Query 045919
Match_columns 277
No_of_seqs 440 out of 2390
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 8.1E-28 2.8E-32 174.7 5.0 54 224-277 1-54 (64)
2 3to5_A CHEY homolog; alpha(5)b 99.4 1.8E-13 6E-18 112.4 8.2 68 1-68 62-133 (134)
3 3gl9_A Response regulator; bet 99.2 6.6E-11 2.3E-15 92.2 8.6 67 1-67 51-121 (122)
4 3f6p_A Transcriptional regulat 99.2 5.2E-11 1.8E-15 92.3 7.0 68 1-68 51-119 (120)
5 3t6k_A Response regulator rece 99.1 1.2E-10 4.3E-15 92.3 9.0 70 1-70 53-126 (136)
6 3h1g_A Chemotaxis protein CHEY 99.1 1.4E-10 4.8E-15 90.8 9.0 68 1-68 56-127 (129)
7 2r25_B Osmosensing histidine p 99.1 7.8E-11 2.7E-15 93.1 7.3 69 1-69 57-128 (133)
8 2pl1_A Transcriptional regulat 99.1 4.6E-10 1.6E-14 85.9 10.0 69 1-69 49-119 (121)
9 1dbw_A Transcriptional regulat 99.1 3E-10 1E-14 88.2 8.7 68 1-68 52-121 (126)
10 3b2n_A Uncharacterized protein 99.1 4E-10 1.4E-14 88.6 8.7 70 1-70 54-125 (133)
11 1zgz_A Torcad operon transcrip 99.1 5.9E-10 2E-14 85.7 9.3 69 1-69 51-120 (122)
12 3crn_A Response regulator rece 99.1 5.7E-10 1.9E-14 87.6 9.2 70 1-70 52-123 (132)
13 1i3c_A Response regulator RCP1 99.0 8.4E-10 2.9E-14 88.6 9.9 70 1-70 66-139 (149)
14 2a9o_A Response regulator; ess 99.0 6.2E-10 2.1E-14 84.9 8.6 68 1-68 50-118 (120)
15 2qzj_A Two-component response 99.0 5.4E-10 1.9E-14 88.5 8.4 71 1-71 53-124 (136)
16 3cfy_A Putative LUXO repressor 99.0 9.4E-10 3.2E-14 87.3 9.6 70 1-70 53-124 (137)
17 1jbe_A Chemotaxis protein CHEY 99.0 1E-09 3.5E-14 85.0 9.6 69 1-69 54-126 (128)
18 3luf_A Two-component system re 99.0 4.5E-10 1.5E-14 100.1 8.5 71 1-71 174-248 (259)
19 1xhf_A DYE resistance, aerobic 99.0 8.9E-10 3E-14 84.8 9.0 69 1-69 52-121 (123)
20 3jte_A Response regulator rece 99.0 1.1E-09 3.9E-14 86.5 9.4 71 1-71 54-126 (143)
21 1zh2_A KDP operon transcriptio 99.0 7.1E-10 2.4E-14 84.7 7.9 69 1-69 50-119 (121)
22 4dad_A Putative pilus assembly 99.0 3.6E-10 1.2E-14 89.9 6.5 70 1-70 72-143 (146)
23 1srr_A SPO0F, sporulation resp 99.0 5.1E-10 1.7E-14 86.5 6.8 67 1-67 52-120 (124)
24 3rqi_A Response regulator prot 99.0 2.3E-10 7.9E-15 95.8 5.2 70 1-70 56-127 (184)
25 1tmy_A CHEY protein, TMY; chem 99.0 7.1E-10 2.4E-14 85.0 7.5 66 1-66 52-119 (120)
26 3r0j_A Possible two component 99.0 1.1E-09 3.9E-14 95.9 9.8 70 1-70 72-143 (250)
27 3m6m_D Sensory/regulatory prot 99.0 9E-10 3.1E-14 88.2 8.4 69 1-69 63-137 (143)
28 3kto_A Response regulator rece 99.0 9.8E-10 3.3E-14 86.7 8.3 71 1-71 55-129 (136)
29 3hv2_A Response regulator/HD d 99.0 1.3E-09 4.6E-14 87.6 9.2 72 1-72 63-137 (153)
30 3kht_A Response regulator; PSI 99.0 1.3E-09 4.4E-14 86.5 8.7 71 1-71 56-131 (144)
31 3hdg_A Uncharacterized protein 99.0 1E-09 3.6E-14 86.1 8.0 71 1-71 56-128 (137)
32 3heb_A Response regulator rece 99.0 1.9E-09 6.4E-14 86.5 9.7 69 1-69 64-136 (152)
33 3cu5_A Two component transcrip 99.0 4.2E-10 1.4E-14 89.8 5.6 70 1-70 54-125 (141)
34 3gt7_A Sensor protein; structu 99.0 1.7E-09 5.8E-14 87.4 9.3 71 1-71 56-130 (154)
35 1k68_A Phytochrome response re 99.0 2.3E-09 7.7E-14 83.5 9.7 71 1-71 60-134 (140)
36 2lpm_A Two-component response 99.0 1.8E-11 6.3E-16 99.1 -2.6 63 1-66 58-120 (123)
37 4e7p_A Response regulator; DNA 99.0 1.4E-09 4.8E-14 87.2 8.4 70 1-70 71-142 (150)
38 2zay_A Response regulator rece 99.0 2.2E-09 7.6E-14 85.2 9.3 72 1-72 57-132 (147)
39 1p6q_A CHEY2; chemotaxis, sign 99.0 8.3E-10 2.8E-14 85.6 6.7 68 1-68 56-127 (129)
40 1dz3_A Stage 0 sporulation pro 99.0 8.5E-10 2.9E-14 86.0 6.6 69 1-69 53-124 (130)
41 3eul_A Possible nitrate/nitrit 99.0 1.9E-09 6.5E-14 86.4 8.8 70 1-70 66-137 (152)
42 3lua_A Response regulator rece 99.0 6.3E-10 2.1E-14 87.9 5.6 71 1-71 55-130 (140)
43 3snk_A Response regulator CHEY 99.0 4.7E-10 1.6E-14 88.3 4.9 68 1-68 64-133 (135)
44 3f6c_A Positive transcription 99.0 6.7E-10 2.3E-14 86.7 5.6 70 1-70 51-122 (134)
45 1a04_A Nitrate/nitrite respons 98.9 2.3E-09 7.9E-14 91.1 9.2 69 1-69 56-126 (215)
46 1mvo_A PHOP response regulator 98.9 1.6E-09 5.4E-14 84.8 7.5 70 1-70 52-123 (136)
47 1mb3_A Cell division response 98.9 1E-09 3.5E-14 84.4 6.0 68 1-68 50-121 (124)
48 1k66_A Phytochrome response re 98.9 3.5E-09 1.2E-13 83.5 9.1 70 1-70 67-140 (149)
49 3hdv_A Response regulator; PSI 98.9 3E-09 1E-13 83.4 8.6 70 1-70 57-129 (136)
50 3cnb_A DNA-binding response re 98.9 3.5E-09 1.2E-13 83.1 9.0 70 1-70 59-132 (143)
51 3nhm_A Response regulator; pro 98.9 2E-09 7E-14 83.8 7.6 70 1-71 52-125 (133)
52 3hzh_A Chemotaxis response reg 98.9 1.6E-09 5.5E-14 87.9 7.2 67 1-67 88-156 (157)
53 3eod_A Protein HNR; response r 98.9 1.4E-09 4.8E-14 84.6 6.5 69 1-69 56-127 (130)
54 2jk1_A HUPR, hydrogenase trans 98.9 3.3E-09 1.1E-13 83.8 8.7 70 1-70 49-121 (139)
55 3kcn_A Adenylate cyclase homol 98.9 3.6E-09 1.2E-13 84.9 8.8 71 1-71 53-126 (151)
56 1yio_A Response regulatory pro 98.9 1.6E-09 5.3E-14 91.6 7.0 70 1-70 53-124 (208)
57 3h5i_A Response regulator/sens 98.9 9.7E-10 3.3E-14 87.2 4.9 72 1-72 55-128 (140)
58 3ilh_A Two component response 98.9 5E-09 1.7E-13 82.5 8.9 69 1-69 65-140 (146)
59 3klo_A Transcriptional regulat 98.9 6.2E-10 2.1E-14 95.9 3.8 70 1-70 59-131 (225)
60 3grc_A Sensor protein, kinase; 98.9 1.3E-09 4.4E-14 85.9 5.3 71 1-71 55-130 (140)
61 2ayx_A Sensor kinase protein R 98.9 3.5E-09 1.2E-13 93.8 8.5 71 1-71 178-250 (254)
62 3cg0_A Response regulator rece 98.9 7.1E-09 2.4E-13 81.2 9.1 71 1-71 59-131 (140)
63 2jba_A Phosphate regulon trans 98.9 9.5E-10 3.2E-14 84.9 3.8 69 1-69 51-123 (127)
64 1qkk_A DCTD, C4-dicarboxylate 98.9 6.3E-09 2.1E-13 83.6 8.7 71 1-71 52-124 (155)
65 1s8n_A Putative antiterminator 98.9 2.5E-09 8.7E-14 90.4 6.7 70 1-70 63-133 (205)
66 1dcf_A ETR1 protein; beta-alph 98.9 3.8E-09 1.3E-13 82.9 7.2 68 1-68 55-129 (136)
67 3dzd_A Transcriptional regulat 98.9 1.7E-09 5.8E-14 102.0 5.7 70 1-70 49-120 (368)
68 3q9s_A DNA-binding response re 98.9 2.1E-09 7.2E-14 94.8 6.0 70 1-70 86-156 (249)
69 1kgs_A DRRD, DNA binding respo 98.9 4.2E-09 1.4E-13 89.8 7.6 70 1-70 51-122 (225)
70 1p2f_A Response regulator; DRR 98.9 6.2E-09 2.1E-13 88.8 8.6 70 1-70 48-119 (220)
71 3n53_A Response regulator rece 98.9 1.3E-09 4.5E-14 86.0 4.1 70 1-70 51-124 (140)
72 3mm4_A Histidine kinase homolo 98.9 4.4E-09 1.5E-13 90.0 7.6 68 1-70 124-198 (206)
73 1w25_A Stalked-cell differenti 98.8 7.6E-09 2.6E-13 98.3 9.6 70 1-70 50-123 (459)
74 2rjn_A Response regulator rece 98.8 9E-09 3.1E-13 82.6 8.6 71 1-71 56-129 (154)
75 2qxy_A Response regulator; reg 98.8 4.6E-09 1.6E-13 82.8 6.7 70 1-71 53-124 (142)
76 3cz5_A Two-component response 98.8 5.2E-09 1.8E-13 83.9 6.9 70 1-70 56-127 (153)
77 3n0r_A Response regulator; sig 98.8 6.4E-10 2.2E-14 101.2 1.4 69 1-71 210-280 (286)
78 3i42_A Response regulator rece 98.8 3.2E-09 1.1E-13 82.2 4.9 69 1-70 52-124 (127)
79 3c3m_A Response regulator rece 98.8 6E-09 2.1E-13 82.3 6.5 69 1-69 52-124 (138)
80 2qr3_A Two-component system re 98.8 6.7E-09 2.3E-13 81.4 6.6 70 1-70 52-128 (140)
81 3cg4_A Response regulator rece 98.8 2.3E-09 8E-14 84.4 3.7 72 1-72 56-131 (142)
82 3bre_A Probable two-component 98.8 1.5E-08 5.2E-13 92.7 9.3 67 1-67 68-138 (358)
83 1qo0_D AMIR; binding protein, 98.8 9.2E-09 3.1E-13 86.3 7.0 69 1-70 57-127 (196)
84 1ny5_A Transcriptional regulat 98.8 1.1E-08 3.7E-13 96.9 8.3 70 1-70 49-120 (387)
85 2qv0_A Protein MRKE; structura 98.8 1.5E-08 5E-13 80.0 7.8 70 1-72 60-131 (143)
86 3eqz_A Response regulator; str 98.8 7.7E-09 2.6E-13 80.3 6.0 70 1-70 51-127 (135)
87 1ys7_A Transcriptional regulat 98.8 5.2E-09 1.8E-13 89.7 5.4 70 1-70 56-127 (233)
88 2qvg_A Two component response 98.8 2.3E-08 7.9E-13 78.7 8.3 67 1-67 64-134 (143)
89 3eq2_A Probable two-component 98.8 7.8E-09 2.7E-13 96.8 6.2 69 1-69 54-125 (394)
90 3a10_A Response regulator; pho 98.7 5.1E-09 1.7E-13 79.6 3.8 64 1-66 50-115 (116)
91 3lte_A Response regulator; str 98.7 2.3E-08 7.8E-13 77.7 7.5 69 1-70 55-127 (132)
92 2oqr_A Sensory transduction pr 98.7 8.4E-09 2.9E-13 88.4 5.2 69 1-69 53-122 (230)
93 2gwr_A DNA-binding response re 98.7 8.7E-09 3E-13 89.3 5.3 69 1-69 54-123 (238)
94 2qsj_A DNA-binding response re 98.7 5.7E-09 2E-13 83.6 3.6 70 1-70 55-126 (154)
95 3c3w_A Two component transcrip 98.7 3.1E-09 1.1E-13 91.8 1.1 70 1-70 52-123 (225)
96 3t8y_A CHEB, chemotaxis respon 98.7 2.9E-08 9.9E-13 81.2 6.9 68 1-68 76-155 (164)
97 3luf_A Two-component system re 98.7 4.6E-08 1.6E-12 87.0 8.3 55 1-55 53-107 (259)
98 2gkg_A Response regulator homo 98.7 3.3E-08 1.1E-12 75.5 6.1 66 1-67 54-124 (127)
99 1dc7_A NTRC, nitrogen regulati 98.6 8E-10 2.7E-14 84.6 -3.4 69 1-69 52-122 (124)
100 2pln_A HP1043, response regula 98.6 8.9E-08 3.1E-12 75.1 7.8 64 6-69 68-134 (137)
101 3kyj_B CHEY6 protein, putative 98.6 2.3E-08 7.8E-13 79.4 3.7 63 1-63 65-130 (145)
102 2rdm_A Response regulator rece 98.5 1.2E-07 4E-12 73.4 6.6 69 1-71 55-126 (132)
103 3sy8_A ROCR; TIM barrel phosph 98.5 3.6E-08 1.2E-12 93.0 3.7 70 1-70 54-130 (400)
104 3c97_A Signal transduction his 98.5 7.5E-08 2.6E-12 75.9 4.3 67 1-70 59-132 (140)
105 2hqr_A Putative transcriptiona 98.5 2E-07 6.8E-12 79.5 6.8 64 6-69 50-116 (223)
106 2j48_A Two-component sensor ki 98.5 5.1E-08 1.7E-12 73.1 2.2 63 1-66 50-116 (119)
107 1a2o_A CHEB methylesterase; ba 98.4 7.4E-07 2.5E-11 83.4 7.8 69 1-69 54-134 (349)
108 2b4a_A BH3024; flavodoxin-like 98.3 1.2E-07 4E-12 74.5 1.0 65 1-69 65-132 (138)
109 2vyc_A Biodegradative arginine 98.2 4.3E-07 1.5E-11 93.1 2.4 70 1-70 58-135 (755)
110 3cwo_X Beta/alpha-barrel prote 98.1 2.6E-06 8.8E-11 72.6 5.6 67 1-67 30-100 (237)
111 1w25_A Stalked-cell differenti 97.9 3.2E-05 1.1E-09 73.2 9.8 70 1-70 199-272 (459)
112 3q7r_A Transcriptional regulat 92.4 0.37 1.3E-05 37.8 6.7 47 22-69 73-119 (121)
113 2hzd_A Transcriptional enhance 91.7 0.13 4.3E-06 38.6 3.2 47 230-277 6-69 (82)
114 3cwo_X Beta/alpha-barrel prote 91.2 0.67 2.3E-05 38.5 7.7 51 12-62 163-220 (237)
115 2yus_A SWI/SNF-related matrix- 74.8 5.8 0.0002 29.0 5.4 43 229-276 17-59 (79)
116 2cu7_A KIAA1915 protein; nucle 74.6 5.7 0.0002 28.1 5.2 43 228-275 7-49 (72)
117 1geq_A Tryptophan synthase alp 70.0 6.9 0.00024 33.5 5.7 49 12-60 69-124 (248)
118 2yum_A ZZZ3 protein, zinc fing 68.8 6.3 0.00021 28.0 4.3 46 229-276 7-55 (75)
119 2cqr_A RSGI RUH-043, DNAJ homo 68.6 13 0.00045 26.7 6.0 45 230-276 18-63 (73)
120 1x41_A Transcriptional adaptor 66.1 14 0.00048 25.1 5.5 44 228-275 6-49 (60)
121 2cqq_A RSGI RUH-037, DNAJ homo 65.1 6.3 0.00022 28.3 3.7 41 231-276 9-52 (72)
122 2ekc_A AQ_1548, tryptophan syn 61.9 15 0.00051 32.2 6.3 55 11-65 81-143 (262)
123 3vnd_A TSA, tryptophan synthas 61.7 6.8 0.00023 35.0 4.0 54 12-65 83-144 (267)
124 1ka9_F Imidazole glycerol phos 61.6 28 0.00094 29.5 7.9 51 12-62 185-242 (252)
125 1qop_A Tryptophan synthase alp 60.2 9.1 0.00031 33.7 4.6 55 11-65 81-143 (268)
126 3o07_A Pyridoxine biosynthesis 57.4 24 0.00083 32.0 6.9 65 11-75 186-258 (291)
127 1thf_D HISF protein; thermophI 57.2 39 0.0013 28.6 8.1 50 12-61 184-240 (253)
128 3nav_A Tryptophan synthase alp 57.1 12 0.00042 33.4 4.9 53 11-63 84-144 (271)
129 3n75_A LDC, lysine decarboxyla 55.9 4.9 0.00017 40.9 2.3 60 11-70 63-125 (715)
130 1wv2_A Thiazole moeity, thiazo 55.7 39 0.0013 30.3 7.9 60 11-70 175-240 (265)
131 2yqk_A Arginine-glutamic acid 55.1 12 0.0004 26.0 3.5 45 225-273 4-48 (63)
132 1xm3_A Thiazole biosynthesis p 55.1 43 0.0015 29.3 8.1 40 11-50 166-206 (264)
133 3sjm_A Telomeric repeat-bindin 51.4 30 0.001 23.9 5.2 43 229-273 10-52 (64)
134 2eqr_A N-COR1, N-COR, nuclear 50.7 17 0.00059 24.8 3.8 45 226-275 8-52 (61)
135 3q58_A N-acetylmannosamine-6-p 49.1 28 0.00097 29.9 5.8 43 9-51 168-210 (229)
136 1h5y_A HISF; histidine biosynt 47.7 65 0.0022 26.7 7.9 51 11-61 186-243 (253)
137 1ujp_A Tryptophan synthase alp 47.6 18 0.00062 32.1 4.4 54 12-65 80-140 (271)
138 3igs_A N-acetylmannosamine-6-p 46.3 37 0.0013 29.2 6.1 42 10-51 169-210 (232)
139 1qo2_A Molecule: N-((5-phospho 46.1 43 0.0015 28.3 6.5 50 12-61 177-239 (241)
140 2w6r_A Imidazole glycerol phos 45.8 30 0.001 29.6 5.5 40 12-51 189-229 (266)
141 4eef_G F-HB80.4, designed hema 43.9 8.8 0.0003 28.0 1.4 44 232-277 22-66 (74)
142 3qja_A IGPS, indole-3-glycerol 42.4 87 0.003 27.6 8.1 55 12-66 102-159 (272)
143 1y0e_A Putative N-acetylmannos 42.2 42 0.0014 27.8 5.8 41 11-51 163-204 (223)
144 1ka9_F Imidazole glycerol phos 42.1 39 0.0013 28.6 5.6 40 12-51 64-104 (252)
145 1vzw_A Phosphoribosyl isomeras 41.9 67 0.0023 27.0 7.1 51 12-62 179-239 (244)
146 2yzr_A Pyridoxal biosynthesis 41.9 63 0.0022 29.8 7.2 61 11-71 228-296 (330)
147 1ity_A TRF1; helix-turn-helix, 41.8 63 0.0022 22.2 5.7 47 225-273 5-51 (69)
148 2y88_A Phosphoribosyl isomeras 40.4 50 0.0017 27.7 6.0 51 11-61 181-241 (244)
149 2htm_A Thiazole biosynthesis p 39.5 1.3E+02 0.0043 27.0 8.6 59 12-70 165-231 (268)
150 1wgx_A KIAA1903 protein; MYB D 36.3 37 0.0013 24.4 3.8 42 232-275 10-52 (73)
151 1yad_A Regulatory protein TENI 36.3 1.4E+02 0.0047 24.7 8.1 40 10-50 151-191 (221)
152 3o63_A Probable thiamine-phosp 36.0 72 0.0025 27.7 6.4 54 11-65 177-238 (243)
153 2d9a_A B-MYB, MYB-related prot 35.7 37 0.0013 22.7 3.5 45 226-274 4-48 (60)
154 4adt_A Pyridoxine biosynthetic 35.5 1E+02 0.0035 27.7 7.5 59 12-70 196-262 (297)
155 1rd5_A Tryptophan synthase alp 34.9 34 0.0012 29.5 4.1 53 11-64 82-138 (262)
156 2w6r_A Imidazole glycerol phos 33.7 52 0.0018 28.1 5.1 40 12-51 63-103 (266)
157 3tha_A Tryptophan synthase alp 33.6 25 0.00085 31.1 3.0 46 22-68 88-139 (252)
158 1thf_D HISF protein; thermophI 33.2 78 0.0027 26.6 6.1 40 12-51 63-103 (253)
159 3lab_A Putative KDPG (2-keto-3 32.9 1.7E+02 0.006 25.1 8.2 56 3-58 43-99 (217)
160 2p9j_A Hypothetical protein AQ 31.9 1.4E+02 0.0049 22.6 7.0 40 12-51 42-81 (162)
161 1rd5_A Tryptophan synthase alp 31.9 77 0.0026 27.2 5.9 41 11-51 189-230 (262)
162 1ep3_A Dihydroorotate dehydrog 31.8 1.2E+02 0.0041 26.3 7.2 39 12-50 230-269 (311)
163 3ajx_A 3-hexulose-6-phosphate 31.5 83 0.0028 25.6 5.8 51 10-60 39-94 (207)
164 1xi3_A Thiamine phosphate pyro 31.2 89 0.0031 25.4 6.0 40 10-50 149-189 (215)
165 1guu_A C-MYB, MYB proto-oncoge 31.0 80 0.0027 20.2 4.5 42 230-275 3-44 (52)
166 2iw5_B Protein corest, REST co 30.7 58 0.002 28.6 4.8 47 225-276 128-174 (235)
167 2cjj_A Radialis; plant develop 30.0 43 0.0015 25.1 3.4 40 232-275 10-52 (93)
168 1yxy_A Putative N-acetylmannos 29.9 93 0.0032 26.0 6.0 41 11-51 175-215 (234)
169 2o6l_A UDP-glucuronosyltransfe 29.6 1.7E+02 0.0058 22.4 7.2 49 20-68 104-154 (170)
170 2elk_A SPCC24B10.08C protein; 29.6 33 0.0011 23.0 2.4 41 232-275 11-51 (58)
171 3tdn_A FLR symmetric alpha-bet 29.6 67 0.0023 27.2 5.0 39 12-50 68-107 (247)
172 2crg_A Metastasis associated p 29.6 49 0.0017 23.2 3.5 45 226-274 4-48 (70)
173 3mn1_A Probable YRBI family ph 29.0 2.1E+02 0.007 22.8 7.8 41 14-54 54-94 (189)
174 1h5y_A HISF; histidine biosynt 28.6 88 0.003 25.8 5.6 40 12-51 66-106 (253)
175 2dim_A Cell division cycle 5-l 28.6 1.4E+02 0.0047 20.4 5.7 44 227-274 6-49 (70)
176 3kts_A Glycerol uptake operon 28.5 85 0.0029 26.6 5.4 44 6-50 134-178 (192)
177 2aje_A Telomere repeat-binding 27.8 41 0.0014 25.8 3.0 50 222-273 5-56 (105)
178 2lnd_A De novo designed protei 27.6 1.9E+02 0.0064 21.5 7.7 48 21-68 50-101 (112)
179 4gmf_A Yersiniabactin biosynth 27.6 1.4E+02 0.0047 27.4 7.1 34 34-67 84-117 (372)
180 1jvn_A Glutamine, bifunctional 27.4 1.4E+02 0.0047 29.0 7.4 51 12-62 485-543 (555)
181 2yxb_A Coenzyme B12-dependent 27.0 2.4E+02 0.0081 22.4 8.4 57 13-70 88-147 (161)
182 2z6i_A Trans-2-enoyl-ACP reduc 26.6 1E+02 0.0034 27.6 5.9 42 9-50 148-190 (332)
183 1tqj_A Ribulose-phosphate 3-ep 25.9 67 0.0023 27.3 4.3 54 11-65 50-108 (230)
184 2tps_A Protein (thiamin phosph 25.8 1.5E+02 0.0051 24.3 6.5 39 11-50 159-199 (227)
185 1geq_A Tryptophan synthase alp 25.5 1.2E+02 0.004 25.5 5.9 40 12-51 180-220 (248)
186 3tqv_A Nicotinate-nucleotide p 25.4 1.5E+02 0.0052 26.6 6.7 51 13-65 187-239 (287)
187 3f4w_A Putative hexulose 6 pho 25.2 1.5E+02 0.0052 24.0 6.4 55 11-66 146-207 (211)
188 2gjl_A Hypothetical protein PA 24.1 1.4E+02 0.0046 26.6 6.2 41 10-50 159-200 (328)
189 4e38_A Keto-hydroxyglutarate-a 23.9 2.8E+02 0.0095 23.9 8.0 54 3-56 64-118 (232)
190 3l0g_A Nicotinate-nucleotide p 23.3 2.3E+02 0.008 25.6 7.6 51 13-65 196-248 (300)
191 3f4w_A Putative hexulose 6 pho 23.2 1.6E+02 0.0053 23.9 6.1 46 10-55 39-88 (211)
192 1qo2_A Molecule: N-((5-phospho 22.6 96 0.0033 26.0 4.7 39 12-50 63-101 (241)
193 1k1e_A Deoxy-D-mannose-octulos 22.5 2.8E+02 0.0095 21.6 8.3 44 12-55 41-84 (180)
194 3bo9_A Putative nitroalkan dio 22.3 1.2E+02 0.0042 27.1 5.6 41 10-50 163-204 (326)
195 3bw2_A 2-nitropropane dioxygen 22.2 1.6E+02 0.0053 26.7 6.3 41 10-50 195-236 (369)
196 1o4u_A Type II quinolic acid p 21.7 1.5E+02 0.005 26.5 5.9 51 14-66 182-235 (285)
197 1gvd_A MYB proto-oncogene prot 21.3 1.6E+02 0.0054 18.8 4.6 41 230-274 3-43 (52)
198 2r8e_A 3-deoxy-D-manno-octulos 21.2 2.5E+02 0.0086 22.1 6.8 39 14-52 61-99 (188)
199 2f6u_A GGGPS, (S)-3-O-geranylg 21.2 64 0.0022 28.0 3.3 38 11-54 50-87 (234)
200 3tsa_A SPNG, NDP-rhamnosyltran 21.0 2.4E+02 0.0081 24.6 7.2 54 14-67 298-355 (391)
201 1p0k_A Isopentenyl-diphosphate 21.0 1.6E+02 0.0055 26.3 6.1 44 8-51 235-280 (349)
202 1viz_A PCRB protein homolog; s 20.9 63 0.0022 28.2 3.2 34 11-50 50-83 (240)
203 1qop_A Tryptophan synthase alp 20.8 1.8E+02 0.0061 25.1 6.2 40 12-51 194-234 (268)
204 2qjg_A Putative aldolase MJ040 20.7 1.8E+02 0.0062 24.7 6.2 57 11-67 190-258 (273)
205 1x1o_A Nicotinate-nucleotide p 20.7 2E+02 0.0068 25.6 6.5 49 14-64 185-236 (286)
206 2zbt_A Pyridoxal biosynthesis 20.5 1.5E+02 0.0051 25.8 5.6 58 11-68 195-260 (297)
207 3e8m_A Acylneuraminate cytidyl 20.4 2.8E+02 0.0096 20.9 8.3 40 14-53 39-78 (164)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.94 E-value=8.1e-28 Score=174.65 Aligned_cols=54 Identities=56% Similarity=0.824 Sum_probs=52.4
Q ss_pred CCCCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhccC
Q 045919 224 KKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277 (277)
Q Consensus 224 ~~~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlq 277 (277)
++.+|+|++||+|||++||+||++||.++||||+||++|+|+|||++|||||||
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999998
No 2
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.44 E-value=1.8e-13 Score=112.35 Aligned_cols=68 Identities=10% Similarity=0.283 Sum_probs=63.2
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+|||+++++.|+.. .+|||++|+........+++.+||++||.|||++++|..+|++++++
T Consensus 62 llD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 62 VTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp EEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred EEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 589999999999999999864 79999999999999999999999999999999999999999988764
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.18 E-value=6.6e-11 Score=92.19 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=62.0
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr 67 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||+++++|..+++++++
T Consensus 51 llD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 51 VLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 579999999999999999864 7999999999999999999999999999999999999999988764
No 4
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.16 E-value=5.2e-11 Score=92.33 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=62.9
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||++.++|..+++.++++
T Consensus 51 i~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 51 LLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 579999999999999999865 89999999999999999999999999999999999999999888754
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.15 E-value=1.2e-10 Score=92.29 Aligned_cols=70 Identities=17% Similarity=0.335 Sum_probs=63.7
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus 53 l~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 53 ICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred EEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 579999999999999999863 7999999999999999999999999999999999999999999987654
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.14 E-value=1.4e-10 Score=90.79 Aligned_cols=68 Identities=21% Similarity=0.325 Sum_probs=62.5
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||+++++|..+++.++..
T Consensus 56 i~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 56 ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 479999999999999999863 78999999999999999999999999999999999999999988753
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.14 E-value=7.8e-11 Score=93.13 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=62.6
Q ss_pred CccccCCCCCHHHHHHHHHH-c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVK-E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire-~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++. . .+|||++|+..+......++..||++||.||++.++|..+++.++...
T Consensus 57 llD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 57 FMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp EECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred EEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 58999999999999999986 3 789999999999999999999999999999999999999998876543
No 8
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.10 E-value=4.6e-10 Score=85.95 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=63.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||+++++|..+++.++++.
T Consensus 49 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 49 IVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp EECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 579999999999999999865 799999999999999999999999999999999999999999988754
No 9
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.09 E-value=3e-10 Score=88.19 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=62.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||++.++|..+++.++++
T Consensus 52 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 52 VTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 579999999999999999875 79999999999999999999999999999999999999999988754
No 10
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.07 E-value=4e-10 Score=88.63 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=62.7
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.+++. .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus 54 ilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 125 (133)
T 3b2n_A 54 ILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp EECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred EEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence 579999999999999999875 7999999999999999999999999999999999999999998876543
No 11
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.07 E-value=5.9e-10 Score=85.67 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=63.6
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.+++. .+|||++++..+......++..||++||.||++.++|...++.++++.
T Consensus 51 i~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 51 LLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp EEESCCSSSCHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCChHHHHHHHHhcCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 579999999999999999875 799999999999988899999999999999999999999999988764
No 12
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.06 E-value=5.7e-10 Score=87.64 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=64.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+++.++++..
T Consensus 52 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 52 LFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 579999999999999999864 7999999999999999999999999999999999999999999887654
No 13
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.05 E-value=8.4e-10 Score=88.60 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=63.9
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.+++. .+|||++++..+......++..||++||.||++.++|..+++.+++...
T Consensus 66 llD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 139 (149)
T 1i3c_A 66 LLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL 139 (149)
T ss_dssp EECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 579999999999999999864 6899999999998899999999999999999999999999999876553
No 14
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.05 E-value=6.2e-10 Score=84.90 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=62.3
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++++.........++..||++||.||++.++|..+++.++++
T Consensus 50 l~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 50 ILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp EECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 579999999999999999865 89999999999988889999999999999999999999999988764
No 15
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.04 E-value=5.4e-10 Score=88.55 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=65.0
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||+++..........++..||++||.||+++++|..+++.++++...
T Consensus 53 llD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~ 124 (136)
T 2qzj_A 53 FLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNS 124 (136)
T ss_dssp EEESEETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhhh
Confidence 579999999999999999866 89999999999999999999999999999999999999999998876543
No 16
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.04 E-value=9.4e-10 Score=87.25 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=64.5
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.+++. .+|||++++..+......++..||++||.||++.++|..+++.++++..
T Consensus 53 llD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 53 ILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp EECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999875 7899999999999999999999999999999999999999999887654
No 17
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.04 E-value=1e-09 Score=85.01 Aligned_cols=69 Identities=14% Similarity=0.308 Sum_probs=63.0
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+++.++++.
T Consensus 54 i~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 54 ISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp EEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 579999999999999999862 789999999999999999999999999999999999999999988653
No 18
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.03 E-value=4.5e-10 Score=100.11 Aligned_cols=71 Identities=27% Similarity=0.371 Sum_probs=65.2
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.+++. .+|||++|+........+++..||++||.||+++++|..++++++++...
T Consensus 174 llD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 174 LVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp EECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred EEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 579999999999999999864 68999999999999999999999999999999999999999999887653
No 19
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.03 E-value=8.9e-10 Score=84.76 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=63.3
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||+++++|..+++.++++.
T Consensus 52 i~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 52 IMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 579999999999999999865 899999999999888899999999999999999999999999888654
No 20
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.02 E-value=1.1e-09 Score=86.51 Aligned_cols=71 Identities=18% Similarity=0.353 Sum_probs=65.8
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+|+.+++++..
T Consensus 54 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 54 ITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999875 79999999999999999999999999999999999999999999987653
No 21
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.02 E-value=7.1e-10 Score=84.70 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=63.3
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|+|++++..+......++..|+++||.||++.++|..+++.++++.
T Consensus 50 i~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 50 ILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EEESEETTEEHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 578999999999999999854 899999999999988999999999999999999999999999888754
No 22
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.02 E-value=3.6e-10 Score=89.90 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=64.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+|..+++++.
T Consensus 72 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 72 MIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp EEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred EEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence 579999999999999999865 8999999999999999999999999999999999999999999987653
No 23
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.01 E-value=5.1e-10 Score=86.47 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=61.5
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr 67 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..|+++||.||++.++|..+++.+++
T Consensus 52 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 52 LLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 579999999999999999864 8999999999999889999999999999999999999999987764
No 24
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.01 E-value=2.3e-10 Score=95.76 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=65.1
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||+++++|..+|+.+++...
T Consensus 56 l~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 56 TVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 589999999999999999875 8999999999999999999999999999999999999999998887655
No 25
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.01 E-value=7.1e-10 Score=84.97 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=60.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY 66 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl 66 (277)
|+|+.||+++|+++++.+++. .+|||++++..+......++..||++||.||+++++|..+++.++
T Consensus 52 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 52 TMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 579999999999999999864 799999999999999999999999999999999999999988764
No 26
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.01 E-value=1.1e-09 Score=95.86 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=65.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++.+||++||.||+++++|..+|+.++++..
T Consensus 72 llD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 72 ILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999876 7999999999999999999999999999999999999999999988754
No 27
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.01 E-value=9e-10 Score=88.17 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=60.7
Q ss_pred CccccCCCCCHHHHHHHHHHc------CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE------EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~------~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||++.++|..++..+....
T Consensus 63 l~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 137 (143)
T 3m6m_D 63 IVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVST 137 (143)
T ss_dssp EEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHhh
Confidence 579999999999999999742 589999999999999999999999999999999999999998876543
No 28
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.00 E-value=9.8e-10 Score=86.71 Aligned_cols=71 Identities=23% Similarity=0.263 Sum_probs=65.7
Q ss_pred CccccCCC--CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISN--IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpd--mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+ ++|+++++.++.. .+|||++|+..+......++..||++||.||++.++|..+|++++.....
T Consensus 55 i~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 55 IIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp EEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred EEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 57999999 9999999999876 89999999999999999999999999999999999999999999887653
No 29
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.00 E-value=1.3e-09 Score=87.61 Aligned_cols=72 Identities=14% Similarity=0.252 Sum_probs=66.4
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEG-ACFFLEKPISFDDLKYVWQHSYIYKRRS 72 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~G-A~dyL~KPis~eeL~~~Lq~vlr~~~~~ 72 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..| |++||.||++.++|..+|..+++++...
T Consensus 63 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 137 (153)
T 3hv2_A 63 ISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHSE 137 (153)
T ss_dssp EEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHHH
Confidence 579999999999999999875 89999999999999999999999 9999999999999999999999877643
No 30
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=98.99 E-value=1.3e-09 Score=86.49 Aligned_cols=71 Identities=11% Similarity=0.221 Sum_probs=66.1
Q ss_pred CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++. . .+|||++++..+......++..||++||.||+ +.++|..+|+.++++...
T Consensus 56 i~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 56 ILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp EECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 57999999999999999987 2 89999999999999999999999999999999 999999999999988763
No 31
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=98.99 E-value=1e-09 Score=86.12 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=66.1
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+|+.+++....
T Consensus 56 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 56 ITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp EECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 579999999999999999876 89999999999999999999999999999999999999999999888764
No 32
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=98.99 E-value=1.9e-09 Score=86.49 Aligned_cols=69 Identities=9% Similarity=0.393 Sum_probs=63.6
Q ss_pred CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++. . .+|||++++..+......++..||++||.||+++++|..+|+.+.+..
T Consensus 64 ilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 64 LLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp EECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999987 3 899999999999999999999999999999999999999999986554
No 33
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=98.99 E-value=4.2e-10 Score=89.75 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=58.0
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.+++. .+|||++|+..+......++..||++||.||++.++|..+++.++++..
T Consensus 54 llD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 54 LTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp EEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999864 7999999998887778889999999999999999999999999887654
No 34
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=98.98 E-value=1.7e-09 Score=87.43 Aligned_cols=71 Identities=24% Similarity=0.241 Sum_probs=65.6
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+|+.++++...
T Consensus 56 i~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 56 ISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 579999999999999999864 78999999999999999999999999999999999999999999887653
No 35
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.98 E-value=2.3e-09 Score=83.52 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=65.2
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..|+++||.||++.++|..+++.++++...
T Consensus 60 i~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 134 (140)
T 1k68_A 60 LLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS 134 (140)
T ss_dssp EECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence 578999999999999999874 68999999999999999999999999999999999999999999887653
No 36
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=98.98 E-value=1.8e-11 Score=99.05 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=55.2
Q ss_pred CccccCCCCCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY 66 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl 66 (277)
|+|+.||+|+|+++++.+++.++|||++|+..+... +..+|+++||.|||++++|..++.+++
T Consensus 58 llDi~mP~~~G~el~~~lr~~~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 58 IIDVNLDGEPSYPVADILAERNVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp EECSSSSSCCSHHHHHHHHHTCCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEecCCCCCCHHHHHHHHHcCCCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 589999999999999999988999999999876543 346799999999999999999887654
No 37
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=98.98 E-value=1.4e-09 Score=87.18 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=65.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+|+.+++++.
T Consensus 71 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 71 ILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp EECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 579999999999999999876 8999999999999999999999999999999999999999999987654
No 38
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=98.97 E-value=2.2e-09 Score=85.21 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=65.2
Q ss_pred CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919 1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRS 72 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~ 72 (277)
|+|+.||+++|+++++.++. . .+|||+++...+......++..||++||.||++.++|..+|+.++++....
T Consensus 57 i~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~ 132 (147)
T 2zay_A 57 ITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYED 132 (147)
T ss_dssp EEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC--
T ss_pred EEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999987 3 899999999999999999999999999999999999999999998876643
No 39
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=98.97 E-value=8.3e-10 Score=85.64 Aligned_cols=68 Identities=15% Similarity=0.351 Sum_probs=62.2
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..|+++||.||++.++|..+++.++++
T Consensus 56 l~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 56 ISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 579999999999999999863 78999999999998899999999999999999999999999988754
No 40
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=98.97 E-value=8.5e-10 Score=86.04 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=62.7
Q ss_pred CccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||+++++|..+++.++++.
T Consensus 53 llD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 53 LLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 579999999999999999863 688999999999999999999999999999999999999999887654
No 41
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1.9e-09 Score=86.43 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=64.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+|+.++++..
T Consensus 66 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 66 LLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 579999999999999999876 8999999999999999999999999999999999999999999987654
No 42
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=98.96 E-value=6.3e-10 Score=87.90 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=63.9
Q ss_pred CccccCC-CCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDIS-NIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mp-dmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.|| +++|+++++.++. . .+|||++++..+......++..||++||.||++.++|..+|+.++++...
T Consensus 55 i~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 55 IMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp EECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred EEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 5799999 9999999999987 3 89999999999999999999999999999999999999999998876653
No 43
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=98.96 E-value=4.7e-10 Score=88.25 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=62.0
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||+++++|..+++.+++.
T Consensus 64 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 64 ILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 579999999999999999876 79999999999999999999999999999999999999999887654
No 44
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=98.95 E-value=6.7e-10 Score=86.70 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=61.7
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+++.++++..
T Consensus 51 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 51 IIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp EEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred EEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 579999999999999999876 8999999999988888999999999999999999999999999887654
No 45
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=98.95 E-value=2.3e-09 Score=91.12 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=64.3
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||+++++|..+++.++++.
T Consensus 56 llD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 56 LLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp EEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred EEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 579999999999999999876 789999999999999999999999999999999999999999988754
No 46
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=98.95 E-value=1.6e-09 Score=84.79 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=62.8
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+++.++++..
T Consensus 52 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 52 VLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp EEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred EEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 579999999999999999875 7899999998888778899999999999999999999999998886543
No 47
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=98.94 E-value=1e-09 Score=84.35 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=56.1
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.+++. .+|||++++.........++..||++||.||++.++|..+++.++++
T Consensus 50 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 50 LMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 579999999999999999863 78999999988888888999999999999999999999999887643
No 48
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.93 E-value=3.5e-09 Score=83.47 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=64.7
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..|+++||.||++.++|..+++.++++..
T Consensus 67 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 67 LLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp EECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 578999999999999999863 7899999999999999999999999999999999999999999988765
No 49
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=98.93 E-value=3e-09 Score=83.36 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=62.4
Q ss_pred CccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+|++++....
T Consensus 57 i~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 57 ITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 579999999999999999864 6899999999999999999999999999999999999999998876654
No 50
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=98.93 E-value=3.5e-09 Score=83.13 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=64.6
Q ss_pred CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++. . .+|||+++...+......++..||++||.||++.++|..+|+.++++..
T Consensus 59 i~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 59 MLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp EEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 57899999999999999987 3 7999999999999999999999999999999999999999999987655
No 51
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=98.93 E-value=2e-09 Score=83.81 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=59.4
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||++++..+... ..++..|+++||.||+++++|..+++.++++...
T Consensus 52 i~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 52 ISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 579999999999999999874 799999999887777 8899999999999999999999999999988764
No 52
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=98.93 E-value=1.6e-09 Score=87.86 Aligned_cols=67 Identities=15% Similarity=0.298 Sum_probs=62.3
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr 67 (277)
|+|+.||+++|+++++.|+.. .+|||+++...+......++..||++||.||++.++|..+|+.+++
T Consensus 88 ilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 88 TLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 579999999999999999875 8999999999999999999999999999999999999999987754
No 53
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=98.93 E-value=1.4e-09 Score=84.63 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=56.0
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||+ +.++|..+++.+++++
T Consensus 56 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 56 ICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EECCC-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 578999999999999999876 79999999999999999999999999999999 8999999999988654
No 54
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=98.92 E-value=3.3e-09 Score=83.80 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=61.7
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHc-CCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVE-GACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~-GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|+|++++..+......++.. ||++||.||++.++|..+++.+++...
T Consensus 49 l~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 49 ICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp EEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999864 7899999998887777888875 599999999999999999999887654
No 55
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=98.92 E-value=3.6e-09 Score=84.89 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=65.4
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEG-ACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~G-A~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..| +++||.||++.++|..+|..++++...
T Consensus 53 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 53 MVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp EEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999865 89999999999999999999999 999999999999999999999987654
No 56
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=98.92 E-value=1.6e-09 Score=91.56 Aligned_cols=70 Identities=19% Similarity=0.317 Sum_probs=64.3
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus 53 l~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 124 (208)
T 1yio_A 53 VLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 124 (208)
T ss_dssp EEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhh
Confidence 579999999999999999875 8999999999888888899999999999999999999999999987654
No 57
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=98.91 E-value=9.7e-10 Score=87.16 Aligned_cols=72 Identities=8% Similarity=0.169 Sum_probs=65.1
Q ss_pred CccccCCC-CCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919 1 MANVDISN-IDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRS 72 (277)
Q Consensus 1 IlDl~mpd-mdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~ 72 (277)
|+|+.||+ ++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+|+.++++++..
T Consensus 55 i~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 55 LMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN 128 (140)
T ss_dssp EEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 57999985 9999999999875 899999999988887888999999999999999999999999999887643
No 58
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=98.90 E-value=5e-09 Score=82.49 Aligned_cols=69 Identities=12% Similarity=0.244 Sum_probs=62.7
Q ss_pred CccccCCCCCHHHHHHHHHH----c--CCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVK----E--EIPIILMSSRRNEIFSWRALVEG-ACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire----~--~iPVIllSs~~~~~~v~~al~~G-A~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++. . .+|||++++..+......++..| |++||.||++.++|..+|+++....
T Consensus 65 i~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 65 CIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp EEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred EEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 57999999999999999987 3 89999999999999999999999 9999999999999999998876544
No 59
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=98.90 E-value=6.2e-10 Score=95.86 Aligned_cols=70 Identities=6% Similarity=-0.099 Sum_probs=64.2
Q ss_pred CccccCCCCCHHHHHHHHHH-c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVK-E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire-~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++. . .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus 59 llD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 131 (225)
T 3klo_A 59 VIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM 131 (225)
T ss_dssp EEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence 58999999999999999987 3 8999999999888888899999999999999999999999999987643
No 60
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=98.90 E-value=1.3e-09 Score=85.91 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=63.3
Q ss_pred CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHH-HHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSW-RALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~-~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++. . .+|||++++..+..... .++..||++||.||++.++|..+|+.++++...
T Consensus 55 i~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 55 TVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 57999999999999999986 3 89999999987776666 888999999999999999999999999988764
No 61
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=98.89 E-value=3.5e-09 Score=93.75 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=65.4
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.|++. .+|||++|+.........++..|+++||.||++.++|..++.+++++.+.
T Consensus 178 l~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~~ 250 (254)
T 2ayx_A 178 LSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRK 250 (254)
T ss_dssp EEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhhh
Confidence 579999999999999999865 89999999999889999999999999999999999999999998877653
No 62
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=98.88 E-value=7.1e-09 Score=81.22 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=65.0
Q ss_pred CccccCC-CCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDIS-NIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mp-dmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.|| +++|+++++.++.. .+|||+++...+......++..|+++||.||++.++|..+++.++++...
T Consensus 59 i~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 59 LVDIMLCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp EEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 5789998 79999999999875 89999999999999999999999999999999999999999999877653
No 63
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=98.88 E-value=9.5e-10 Score=84.88 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=62.4
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.+++. .+|||++++..+......++..||++||.||+++++|...++.++++.
T Consensus 51 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 51 LLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 578999999999999999863 789999999988888889999999999999999999999999887653
No 64
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=98.87 E-value=6.3e-09 Score=83.63 Aligned_cols=71 Identities=21% Similarity=0.416 Sum_probs=65.0
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||+++...+......++..|+++||.||++.++|..+++.+++++..
T Consensus 52 ild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 52 ISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp EEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999865 89999999998888899999999999999999999999999999877653
No 65
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=98.87 E-value=2.5e-09 Score=90.38 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=64.5
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. ..|||++|+..+......++..||++||.||+++++|..+|+.++++..
T Consensus 63 i~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 63 IMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp EEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCChHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999876 6699999999988889999999999999999999999999999987764
No 66
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=98.87 E-value=3.8e-09 Score=82.92 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=59.2
Q ss_pred CccccCCCCCHHHHHHHHHHc------CC-cEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE------EI-PIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~------~i-PVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.+++. .. |||++|+..+......++..||++||.||++.++|..+++.+++.
T Consensus 55 llD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 55 FMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp EEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred EEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 579999999999999999742 23 577899998888889999999999999999999999999887654
No 67
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.86 E-value=1.7e-09 Score=101.96 Aligned_cols=70 Identities=20% Similarity=0.349 Sum_probs=65.3
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+|+|+++++.++.. .+|||++|+..+.....+++..||++||.||+++++|..+|++++....
T Consensus 49 llDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 49 VLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp EEESEETTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 589999999999999999865 8999999999999999999999999999999999999999999988754
No 68
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=98.86 E-value=2.1e-09 Score=94.81 Aligned_cols=70 Identities=24% Similarity=0.284 Sum_probs=65.0
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+...+..++..||++||.||+++++|..+|+.++++..
T Consensus 86 llD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 86 LLDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp EEECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred EEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 589999999999999999876 8999999999999999999999999999999999999999999887643
No 69
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=98.86 E-value=4.2e-09 Score=89.78 Aligned_cols=70 Identities=14% Similarity=0.262 Sum_probs=64.8
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus 51 llD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 51 ILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 579999999999999999875 8999999999988889999999999999999999999999999988754
No 70
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=98.86 E-value=6.2e-09 Score=88.77 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=64.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||+++++|..+++.++++..
T Consensus 48 llD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 119 (220)
T 1p2f_A 48 VLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK 119 (220)
T ss_dssp EEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcccc
Confidence 579999999999999999865 8999999999999999999999999999999999999999999987743
No 71
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=98.86 E-value=1.3e-09 Score=86.01 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=54.8
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+++.+++++.
T Consensus 51 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 124 (140)
T 3n53_A 51 ILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
T ss_dssp EEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHH
Confidence 579999999999999999864 7999999999888888889999999999999999999999999988765
No 72
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=98.85 E-value=4.4e-09 Score=90.01 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=58.5
Q ss_pred CccccCCCCCHHHHHHHHHH------cCCcEEEEecCC-CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVK------EEIPIILMSSRR-NEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire------~~iPVIllSs~~-~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.|+. ..+|||++|+.. +......++..||++||.||++ +|..+|+.+++++.
T Consensus 124 llD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 124 FMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp EEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred EEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 58999999999999999986 379999999987 7788889999999999999998 89999988887654
No 73
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.84 E-value=7.6e-09 Score=98.31 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=64.5
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||+++++|..+++.+++...
T Consensus 50 llD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (459)
T 1w25_A 50 LLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKL 123 (459)
T ss_dssp EEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 589999999999999999863 6899999999999999999999999999999999999999999887543
No 74
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=98.84 E-value=9e-09 Score=82.60 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=64.5
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEG-ACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~G-A~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..| |++||.||++.++|..+|..++++...
T Consensus 56 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~ 129 (154)
T 2rjn_A 56 ISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFL 129 (154)
T ss_dssp EEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999865 89999999998888899999998 999999999999999999999877653
No 75
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=98.84 E-value=4.6e-09 Score=82.85 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=62.4
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+ ||+++|+++++.++.. .+|||++++..+......++..|+++||.||++.++|..+++.++++...
T Consensus 53 i~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 53 FVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp EEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred EEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 5788 9999999999999865 79999999999999999999999999999999999999999999877654
No 76
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=98.83 E-value=5.2e-09 Score=83.92 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=64.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||+++...+......++..||++||.||++.++|..+++.++++..
T Consensus 56 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 56 VMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp EECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 578999999999999999875 8999999999999999999999999999999999999999998876654
No 77
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=98.82 E-value=6.4e-10 Score=101.16 Aligned_cols=69 Identities=13% Similarity=0.343 Sum_probs=61.3
Q ss_pred CccccCC-CCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDIS-NIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mp-dmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.|| +|||+++++.|+.. .+|||++|+..+ ...+++..||++||.||+++++|..+|..++.....
T Consensus 210 l~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~~ 280 (286)
T 3n0r_A 210 LADIQLADGSSGIDAVKDILGRMDVPVIFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPR 280 (286)
T ss_dssp EEESCCTTSCCTTTTTHHHHHHTTCCEEEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSCC
T ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCCc
Confidence 5899999 79999999999866 999999999753 456788999999999999999999999999987653
No 78
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=98.82 E-value=3.2e-09 Score=82.23 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=58.5
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+... ..++..||++||.||++.++|...+++..+...
T Consensus 52 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 52 FIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp EEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC----
T ss_pred EEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccCC
Confidence 579999999999999999864 799999999888777 788999999999999999999999998766543
No 79
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=98.81 E-value=6e-09 Score=82.31 Aligned_cols=69 Identities=10% Similarity=0.191 Sum_probs=58.7
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++.........++..|+++||.||++.++|..+++.+++++
T Consensus 52 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 52 LLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 579999999999999999863 689999998876665556666778999999999999999999887543
No 80
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=98.81 E-value=6.7e-09 Score=81.38 Aligned_cols=70 Identities=16% Similarity=0.325 Sum_probs=62.1
Q ss_pred CccccCC-----CCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDIS-----NIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mp-----dmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.|| +++|+++++.++.. .+|||+++...+......++..|+++||.||++.++|..+++.++++..
T Consensus 52 i~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 52 LLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp EEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred EEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 5788998 99999999999865 8999999999888889999999999999999999999999998886543
No 81
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=98.80 E-value=2.3e-09 Score=84.41 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=64.8
Q ss_pred CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919 1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRS 72 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~ 72 (277)
|+|+.||+++|+++++.++. . .+|||+++...+......++..||++||.||++.++|..+|+.++++.+..
T Consensus 56 i~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 131 (142)
T 3cg4_A 56 LLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQ 131 (142)
T ss_dssp EEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 57899999999999999987 3 799999999888777788899999999999999999999999999877643
No 82
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=98.79 E-value=1.5e-08 Score=92.70 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=61.5
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr 67 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||++.++|..++..+++
T Consensus 68 l~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 68 LQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 589999999999999999853 6999999999999999999999999999999999999999987753
No 83
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=98.78 E-value=9.2e-09 Score=86.32 Aligned_cols=69 Identities=4% Similarity=0.007 Sum_probs=62.4
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+ +++.++.. .+|||++|+..+......++..||++||.||+++.+|...+..+++...
T Consensus 57 l~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 57 FTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp EEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred EEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 579999999998 88888764 8999999999999999999999999999999999999999998887654
No 84
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.78 E-value=1.1e-08 Score=96.93 Aligned_cols=70 Identities=14% Similarity=0.320 Sum_probs=64.7
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||++.++|..++.++++.+.
T Consensus 49 llD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 120 (387)
T 1ny5_A 49 LLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120 (387)
T ss_dssp EEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999865 8999999999999999999999999999999999999999999887543
No 85
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=98.78 E-value=1.5e-08 Score=80.02 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=60.3
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRS 72 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~ 72 (277)
|+|+.||+++|+++++.++.. .+|||+++...+ ....++..||++||.||++.++|..+|+.+++.++..
T Consensus 60 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (143)
T 2qv0_A 60 FLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ 131 (143)
T ss_dssp EECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCCHHHHHHHHHccCCCceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999875 567888887643 5678899999999999999999999999998877643
No 86
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=98.78 E-value=7.7e-09 Score=80.33 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=60.6
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNE-----IFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~-----~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.+++. .+|||++++..+. .....++..||++||.||++.++|..+|++++....
T Consensus 51 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~ 127 (135)
T 3eqz_A 51 ILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA 127 (135)
T ss_dssp EEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcc
Confidence 579999999999999999876 8999999998774 666778899999999999999999999988765543
No 87
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=98.77 E-value=5.2e-09 Score=89.67 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=64.2
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||+++++|..+++.++++..
T Consensus 56 llD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 56 VLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 579999999999999999875 8999999999888888889999999999999999999999999987754
No 88
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=98.76 E-value=2.3e-08 Score=78.70 Aligned_cols=67 Identities=10% Similarity=0.207 Sum_probs=60.2
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr 67 (277)
|+|+.||+++|+++++.++.. .+|||+++...+......++..|+++||.||++.++|..++.....
T Consensus 64 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 64 LLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp EEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 578999999999999999864 7899999999999999999999999999999999999998776443
No 89
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=98.75 E-value=7.8e-09 Score=96.77 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=59.9
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+.....+++..||++||.||+ ..+.|..++..++++.
T Consensus 54 llD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 54 ICDLRMPQIDGLELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp EECCCSSSSCTHHHHHHHHHTTCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 589999999999999999876 89999999999999999999999999999999 6888988888877653
No 90
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=98.74 E-value=5.1e-09 Score=79.61 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=55.7
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY 66 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl 66 (277)
|+|+.||+++|+++++.+++. .+|||++++..... ..++..|+++||.||++.++|..+++.++
T Consensus 50 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 50 ILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 578999999999999999864 78999999876554 67788999999999999999999888764
No 91
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=98.73 E-value=2.3e-08 Score=77.66 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=54.9
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .++||+++... ......++..||++||.||++.++|..+|+.+.....
T Consensus 55 i~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 55 TLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLD-KAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp EEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSC-SHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred EEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCC-hHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 579999999999999999864 34455555544 4478899999999999999999999999998876544
No 92
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=98.73 E-value=8.4e-09 Score=88.36 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=63.6
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||+++++|..+++.++++.
T Consensus 53 llD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 53 LLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp EEESSCSSSCHHHHHHHHHHHCSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred EEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999865 899999999988888899999999999999999999999999988764
No 93
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=98.72 E-value=8.7e-09 Score=89.34 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=63.4
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||+++++|..+|+.++++.
T Consensus 54 ilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 54 LLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp EEESSCSSSCHHHHHHHHHTTCCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999876 899999999988888899999999999999999999999999887654
No 94
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=98.72 E-value=5.7e-09 Score=83.61 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=53.5
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||+++...+......++..|+++||.||++.++|..+|+.++++..
T Consensus 55 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 55 LLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp EECC------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 578999999999999999875 7999999998888889999999999999999999999999999887654
No 95
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=98.68 E-value=3.1e-09 Score=91.77 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=65.0
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus 52 llD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 52 VLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp EECSEETTEEHHHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 579999999999999999865 8999999999999999999999999999999999999999999988754
No 96
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=98.68 E-value=2.9e-08 Score=81.22 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=55.9
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHH--HHHHHHHcCCcEEEeCCCC---------HHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEI--FSWRALVEGACFFLEKPIS---------FDDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~--~v~~al~~GA~dyL~KPis---------~eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||+++...+.. .+..++..||++||.||++ .++|..+++.++..
T Consensus 76 ilD~~l~~~~g~~l~~~lr~~~~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 76 TMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp EECSSCSSSCHHHHHHHHHHHSCCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 589999999999999999865 78999999876643 6778999999999999999 56666666655543
No 97
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=98.67 E-value=4.6e-08 Score=86.98 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=50.6
Q ss_pred CccccCCCCCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCH
Q 045919 1 MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISF 55 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~ 55 (277)
|+|+.||+++|+++++.++...+|||++|+..+......++.+||++||.||+..
T Consensus 53 llD~~mP~~~G~~~~~~lr~~~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 53 LVDLTLPDAPSGEAVKVLLERGLPVVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EEESCBTTBTTSHHHHHHHHTTCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 5799999999999999999889999999999999999999999999999999744
No 98
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=98.65 E-value=3.3e-08 Score=75.52 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=59.4
Q ss_pred CccccCC-CCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919 1 MANVDIS-NIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mp-dmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr 67 (277)
|+|+.|| +++|+++++.++.. .+|||++ +.........++..|+++||.||++.++|...++.+++
T Consensus 54 i~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 54 VLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 5789999 99999999999864 7999999 87778888899999999999999999999999988764
No 99
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=98.64 E-value=8e-10 Score=84.57 Aligned_cols=69 Identities=17% Similarity=0.370 Sum_probs=61.7
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||++.++|..+++.+++++
T Consensus 52 i~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 52 LSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp EECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 478899999999999998864 799999999888877888899999999999999999999999988654
No 100
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=98.62 E-value=8.9e-08 Score=75.05 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHH
Q 045919 6 ISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYK 69 (277)
Q Consensus 6 mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~ 69 (277)
||+++|+++++.++.. .+|||++++..+......++..||++||.||+ +.++|..+++.++++.
T Consensus 68 ~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 68 VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp ECSTTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred EcCccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 7899999999999875 79999999999999999999999999999999 9999999999887654
No 101
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=98.59 E-value=2.3e-08 Score=79.42 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=48.7
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEec--CCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSS--RRNEIFSWRALVEGACFFLEKPISFDDLKYVWQ 63 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs--~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq 63 (277)
|+|+.||+++|+++++.++.. .+|+|+++. .........++..||++||.||+++++|...++
T Consensus 65 ilD~~l~~~~g~~~~~~lr~~~~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~ 130 (145)
T 3kyj_B 65 LLDIEMPVMDGMEFLRHAKLKTRAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEK 130 (145)
T ss_dssp EECTTSCCCTTCHHHHHHHHHCCCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------C
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence 589999999999999999865 789999887 555667789999999999999999766655543
No 102
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=98.55 E-value=1.2e-07 Score=73.42 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=59.0
Q ss_pred CccccCCC-CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919 1 MANVDISN-IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 1 IlDl~mpd-mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~ 71 (277)
|+|+.||+ ++|+++++.++.. .+|||+++...+......++..| +||.||++.++|..+++++++....
T Consensus 55 i~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 55 VTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp EEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred EEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 57899997 9999999999865 79999999988887777776665 7999999999999999998876543
No 103
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=98.53 E-value=3.6e-08 Score=92.97 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=58.7
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNE-----IFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~-----~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+|+|+++++.++.. .+|||++|+.... ....+++..||.+||.||+++++|..++..+++...
T Consensus 54 llDi~mP~~dG~ell~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 54 ICDLQMSGMDGLAFLRHASLSGKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp EECSSCSSSCHHHHHHHHHHHTCEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 589999999999999999865 4566666666555 556788899999999999999999999999987654
No 104
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=98.50 E-value=7.5e-08 Score=75.95 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=53.7
Q ss_pred CccccCCCCCHHHHHHHHHH-------cCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVK-------EEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire-------~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
|+|+.||+++|+++++.+++ ..+|||+++......... ..|+++||.||++.++|..++..++.+..
T Consensus 59 llD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 59 IMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp EECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 57999999999999999975 268899998865543322 68999999999999999999998875543
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=98.48 E-value=2e-07 Score=79.46 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHH
Q 045919 6 ISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYK 69 (277)
Q Consensus 6 mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~ 69 (277)
||+++|+++++.++.. .+|||++|+..+......++..||++||.||+ ++++|..+++.++++.
T Consensus 50 lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 50 VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ECCTTHHHHHHHHHHHCTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred eCCCCHHHHHHHHHhCCCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 7999999999999864 79999999999999999999999999999999 9999999999988764
No 106
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=98.45 E-value=5.1e-08 Score=73.07 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=55.3
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY 66 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl 66 (277)
|+|+.+|+++|+++++.++.. .+|||+++...... .++..|+++||.||++..+|...++.++
T Consensus 50 i~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 50 LMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 578899999999999999864 78999999887765 8889999999999999999998887654
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=98.35 E-value=7.4e-07 Score=83.43 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=58.4
Q ss_pred CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCH--HHHHHHHHcCCcEEEeCCCCH---------HHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNE--IFSWRALVEGACFFLEKPISF---------DDLKYVWQHSYIY 68 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~--~~v~~al~~GA~dyL~KPis~---------eeL~~~Lq~vlr~ 68 (277)
|+|+.||+++|+++++.++.. .+|||++|+.... ....+++..||++||.||++. ++|...++.+.+.
T Consensus 54 llDi~mp~~dGlell~~l~~~~p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 54 TLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCCSSSCHHHHHHHHHHSSCCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCHHHHHHHHHhcCCCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 579999999999999999876 7999999987765 347889999999999999983 7777777777654
Q ss_pred H
Q 045919 69 K 69 (277)
Q Consensus 69 ~ 69 (277)
+
T Consensus 134 ~ 134 (349)
T 1a2o_A 134 R 134 (349)
T ss_dssp C
T ss_pred h
Confidence 3
No 108
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=98.30 E-value=1.2e-07 Score=74.48 Aligned_cols=65 Identities=11% Similarity=0.250 Sum_probs=53.0
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEe-cCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMS-SRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllS-s~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
|+|+.||+++|+++++.++.. .+|||+++ +..+... ..++ +++||.||++.++|..+++.+++++
T Consensus 65 ilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 65 IVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp EEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999875 89999999 7766554 5554 9999999999999999998776543
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=98.18 E-value=4.3e-07 Score=93.09 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=62.3
Q ss_pred CccccCCC----CCHHHHHHHHHHc--CCcEEEEecCCC-HHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHHHHh
Q 045919 1 MANVDISN----IDSLSFVRVLVKE--EIPIILMSSRRN-EIFSWRALVEGACFFLEKPISFDD-LKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpd----mdG~eLL~~Ire~--~iPVIllSs~~~-~~~v~~al~~GA~dyL~KPis~ee-L~~~Lq~vlr~~~ 70 (277)
|+|+.||+ ++|+++++.|++. .+||||+|+... ......++..||++||.||++..+ |...|++++++..
T Consensus 58 ilDi~lp~~~~~~~G~~ll~~iR~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 58 MFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp EEECCCCSHHHHHHHHHHHHHHHHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcccccccHHHHHHHHHHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 58999999 9999999999876 799999999766 566677889999999999999999 8899999998754
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.12 E-value=2.6e-06 Score=72.57 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=55.1
Q ss_pred CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHH
Q 045919 1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKP--ISFDDLKYVWQHSYI 67 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KP--is~eeL~~~Lq~vlr 67 (277)
|+|+.||+++|+++++.++.. ..++++++..........++..||++|+.|| +...+|...+...+.
T Consensus 30 l~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 30 TMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp EEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence 579999999999999999864 5567677666668888999999999999999 677778777766554
No 111
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=97.94 E-value=3.2e-05 Score=73.24 Aligned_cols=70 Identities=26% Similarity=0.328 Sum_probs=62.5
Q ss_pred CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
++|+.||.|+|+++++.++.. .+|+|+++..........++..|+.+|+.||+...++...+..+++.+.
T Consensus 199 l~D~~mp~~dG~~~~~~ir~~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~ 272 (459)
T 1w25_A 199 IVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKR 272 (459)
T ss_dssp EEETTCSSSCHHHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCcHHHHHHHHHhCccccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 468899999999999998854 7999999999999888999999999999999999999988887776554
No 112
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=92.40 E-value=0.37 Score=37.78 Aligned_cols=47 Identities=19% Similarity=0.076 Sum_probs=40.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919 22 EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69 (277)
Q Consensus 22 ~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~ 69 (277)
..-+|++-..-+.+.+.+.+..||. ||.+|+.+..|..+|++.++..
T Consensus 73 ~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 73 GSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp SCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred cccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 3456777777788899999999999 9999999999999999888753
No 113
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=91.65 E-value=0.13 Score=38.62 Aligned_cols=47 Identities=36% Similarity=0.513 Sum_probs=31.5
Q ss_pred ccccChHHHHHHHHHHHhcCCCCCCcHHHHhh---c-C-------------CCCCCHHHHhhccC
Q 045919 230 RIVWTSELHLKFIEAVSSLGDIKARPKLILQK---M-N-------------VPGLTQRQVASHLQ 277 (277)
Q Consensus 230 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~---m-~-------------v~~lt~~~v~shlq 277 (277)
.-+|.++|-.-|++|+...-... +-|.+|.. | + -.-=|+.+|.||||
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQ 69 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCG-RRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 69 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCC-ccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHH
Confidence 45899999999999999886221 11222311 1 1 14468889999998
No 114
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=91.16 E-value=0.67 Score=38.52 Aligned_cols=51 Identities=22% Similarity=0.211 Sum_probs=42.4
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEE------eCCCCHHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFL------EKPISFDDLKYVW 62 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL------~KPis~eeL~~~L 62 (277)
+++++++... .+|||.+.+........+++..||++++ .+|+++.++...+
T Consensus 163 ~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l 220 (237)
T 3cwo_X 163 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYL 220 (237)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHH
Confidence 5567776655 8999999999999999999999999986 5788888877654
No 115
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=74.75 E-value=5.8 Score=28.97 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=34.3
Q ss_pred CccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhcc
Q 045919 229 PRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHL 276 (277)
Q Consensus 229 ~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shl 276 (277)
.+-.||++=+.+|++||...| --=..|-+.| ++=|..+++.|-
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G---~~W~~IA~~v--~~RT~~qcr~r~ 59 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK---DDWNKVSEHV--GSRTQDECILHF 59 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS---SCHHHHHHHH--SSCCHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHHhC---CCHHHHHHHc--CCCCHHHHHHHH
Confidence 356799999999999999999 2346777776 478888888774
No 116
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=74.61 E-value=5.7 Score=28.09 Aligned_cols=43 Identities=26% Similarity=0.225 Sum_probs=33.6
Q ss_pred CCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhc
Q 045919 228 KPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASH 275 (277)
Q Consensus 228 k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~sh 275 (277)
..+-.||+|=+..|+++|..+|- .=..|-..| ||=|..+|+.|
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~~--~~Rt~~q~k~r 49 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR---RWTKISKLI--GSRTVLQVKSY 49 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS---CHHHHHHHH--SSSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc---CHHHHHHHc--CCCCHHHHHHH
Confidence 34567999999999999999994 335566654 78888888876
No 117
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=69.95 E-value=6.9 Score=33.46 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=35.2
Q ss_pred HHHHHHHHHc-CCcEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRN------EIFSWRALVEGACFFLEKPISFDDLKY 60 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~------~~~v~~al~~GA~dyL~KPis~eeL~~ 60 (277)
+++++.+++. ++||+++..... ...+..++.+||+.++.-.+..++...
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~ 124 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKE 124 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHH
Confidence 5677777765 789998874222 467778889999999997666655443
No 118
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.84 E-value=6.3 Score=27.98 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=34.5
Q ss_pred CccccChHHHHHHHHHHHhcCCCCCCc---HHHHhhcCCCCCCHHHHhhcc
Q 045919 229 PRIVWTSELHLKFIEAVSSLGDIKARP---KLILQKMNVPGLTQRQVASHL 276 (277)
Q Consensus 229 ~r~~Wt~~lh~~Fv~av~~lg~~~a~p---k~il~~m~v~~lt~~~v~shl 276 (277)
.+-.||+|=+.+|+++|..+|.....| ..|-+.| +|=|..+|+.|-
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~ 55 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQV 55 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHH
Confidence 345799999999999999999544323 4555555 688888888763
No 119
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=68.58 E-value=13 Score=26.71 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=34.3
Q ss_pred ccccChHHHHHHHHHHHhcCCCCCCcHHHHhhc-CCCCCCHHHHhhcc
Q 045919 230 RIVWTSELHLKFIEAVSSLGDIKARPKLILQKM-NVPGLTQRQVASHL 276 (277)
Q Consensus 230 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m-~v~~lt~~~v~shl 276 (277)
+-.||++=...|+.||..+|.+ +|.+--.+- -|||=|-.+|+.|-
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~vpGRT~~qcr~Ry 63 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRG--SSDCWDKIARCVPSKSKEDCIARY 63 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGGCSSSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHH
Confidence 3459999999999999999943 776544332 24799999998873
No 120
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=66.13 E-value=14 Score=25.06 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=33.0
Q ss_pred CCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhc
Q 045919 228 KPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASH 275 (277)
Q Consensus 228 k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~sh 275 (277)
-.|-.||+|=..+|++||..+|.. .=+.|-+.| +|=|..+++.|
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~r 49 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFG--NWQDVANQM--CTKTKEECEKH 49 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTT--CHHHHHHHH--TTSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcC--cHHHHHHHh--CCCCHHHHHHH
Confidence 345579999999999999999942 235666666 67777777665
No 121
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=65.08 E-value=6.3 Score=28.33 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=32.7
Q ss_pred cccChHHHHHHHHHHHhcCCCCCCcH---HHHhhcCCCCCCHHHHhhcc
Q 045919 231 IVWTSELHLKFIEAVSSLGDIKARPK---LILQKMNVPGLTQRQVASHL 276 (277)
Q Consensus 231 ~~Wt~~lh~~Fv~av~~lg~~~a~pk---~il~~m~v~~lt~~~v~shl 276 (277)
-.||.|=++.|..|+..++ .-||. +|-..| |=|-.+|+.|-
T Consensus 9 ~~WT~eE~k~fe~al~~~p--~~t~~RW~~IA~~l---gRt~~eV~~~y 52 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFP--GGTPGRWEKIAHEL---GRSVTDVTTKA 52 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSC--TTCTTHHHHHHHHH---TSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHHh---CCCHHHHHHHH
Confidence 3699999999999999998 34565 466665 67999998873
No 122
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=61.88 E-value=15 Score=32.23 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=38.5
Q ss_pred HHHHHHHHHHc--CCcEEEEecCCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE--EIPIILMSSRRN------EIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 11 G~eLL~~Ire~--~iPVIllSs~~~------~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
.+++++.++.. ++|+++|+-... ...+..+..+|+++++.-.+..+++...+..+
T Consensus 81 ~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 81 VLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 34667777755 799999853321 34556788999999999888887766555443
No 123
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=61.70 E-value=6.8 Score=34.97 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=39.6
Q ss_pred HHHHHHHHHc--CCcEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 12 LSFVRVLVKE--EIPIILMSSRR------NEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 12 ~eLL~~Ire~--~iPVIllSs~~------~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
+++++.++.. ++|+++|+-.. -...+..+..+|+++++.-.+.+++....+..+
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 6777777753 89999987532 245678889999999999888887755544443
No 124
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=61.57 E-value=28 Score=29.54 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=40.6
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe------CCCCHHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE------KPISFDDLKYVW 62 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~------KPis~eeL~~~L 62 (277)
+++++.++.. .+|||...+-...+.+.+++..||++++. .|+++.++...+
T Consensus 185 ~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l 242 (252)
T 1ka9_F 185 LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYL 242 (252)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7888888765 89999988888888888889999999876 356776665543
No 125
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=60.25 E-value=9.1 Score=33.67 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=38.6
Q ss_pred HHHHHHHHHHc--CCcEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE--EIPIILMSSRR------NEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 11 G~eLL~~Ire~--~iPVIllSs~~------~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
++++++.++.. ++||++|+-.. ....+..+..+|+++++.-.+..+++...+..+
T Consensus 81 ~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 81 CFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 34667777754 79998875222 145677888999999999888877765555444
No 126
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=57.38 E-value=24 Score=32.04 Aligned_cols=65 Identities=8% Similarity=0.002 Sum_probs=48.5
Q ss_pred HHHHHHHHHHc-CCcEEEEec--CCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHhhhhhh
Q 045919 11 SLSFVRVLVKE-EIPIILMSS--RRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKRRSKIQ 75 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs--~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~~~~~~ 75 (277)
.+++++++++. .+|||+++. -..+..+..++..|++++++ +.-++......+..++.........
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~~~~~~~ 258 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHFDNPSKL 258 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTTTCHHHH
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhccCHHHH
Confidence 37888887765 899998743 34688889999999999876 4556788888888887776654433
No 127
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=57.24 E-value=39 Score=28.58 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=38.6
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe------CCCCHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE------KPISFDDLKYV 61 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~------KPis~eeL~~~ 61 (277)
+++++.++.. .+|||...+-...+.+.+++..||++++. .|+++.++...
T Consensus 184 ~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~~ 240 (253)
T 1thf_D 184 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEY 240 (253)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHHH
Confidence 7788888765 89999988888888888999999999876 34555554443
No 128
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=57.13 E-value=12 Score=33.36 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=38.5
Q ss_pred HHHHHHHHHHc--CCcEEEEecC------CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 045919 11 SLSFVRVLVKE--EIPIILMSSR------RNEIFSWRALVEGACFFLEKPISFDDLKYVWQ 63 (277)
Q Consensus 11 G~eLL~~Ire~--~iPVIllSs~------~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq 63 (277)
.+++++.++.. .+|+++|+-. +-...+..+.++|++++|.--+.+++......
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~ 144 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVA 144 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Confidence 46677777753 8999998732 33456888899999999998777777544333
No 129
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=55.87 E-value=4.9 Score=40.86 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=40.6
Q ss_pred HHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHHh
Q 045919 11 SLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 11 G~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~~ 70 (277)
+.++++.|+.. .+||++++.......+.-....++++|+.... +++.+...|..+++++.
T Consensus 63 ~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 125 (715)
T 3n75_A 63 NLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTDEYI 125 (715)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCcccccchhhhhccCeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 67899999865 99999998875432221112357888998875 55666666766666654
No 130
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=55.73 E-value=39 Score=30.28 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=47.2
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHh
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~ 70 (277)
.+++++.+++. ++|||+=.+-..++.+..+++.||+++++ +.-++..+...+..++..-+
T Consensus 175 ~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~aGr 240 (265)
T 1wv2_A 175 NPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGR 240 (265)
T ss_dssp CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHH
Confidence 37888888776 99999977888999999999999999976 44557777777766664443
No 131
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.06 E-value=12 Score=25.98 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=29.5
Q ss_pred CCCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHh
Q 045919 225 KKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVA 273 (277)
Q Consensus 225 ~~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~ 273 (277)
.+...+-.||++=|..|.+|+.+.|=+ =..|-..| |+.=|..+|.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v 48 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKN---FFRIRKEL-LPNKETGELI 48 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSC---HHHHHHHS-CTTSCHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCcHHHHH
Confidence 444556789999999999999999932 12333211 4555655554
No 132
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=55.06 E-value=43 Score=29.30 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
+.++++.+++. ++|||+..+-.+.+.+..++..||+++++
T Consensus 166 ~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 166 NPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp CHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 46778887765 89999998888889999999999999976
No 133
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=51.44 E-value=30 Score=23.88 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=32.3
Q ss_pred CccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHh
Q 045919 229 PRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVA 273 (277)
Q Consensus 229 ~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~ 273 (277)
.|-.||+|=...++++|.+.|.. .=+.|.+.+...|=|-.+++
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~--~W~~Ia~~~~~~~Rt~~qcr 52 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEG--NWAAISKNYPFVNRTAVMIK 52 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCC--chHHHHhhcCCCCCCHHHHH
Confidence 35579999999999999999942 24567777766676666554
No 134
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.65 E-value=17 Score=24.77 Aligned_cols=45 Identities=16% Similarity=0.052 Sum_probs=32.6
Q ss_pred CCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhc
Q 045919 226 KRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASH 275 (277)
Q Consensus 226 ~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~sh 275 (277)
.++..-.||++=|..|++|+.+.| . -=..|-.+ |||=|..+|.-|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g-k--~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP-K--NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST-T--CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC-C--CHHHHHHH--cCCCCHHHHHHH
Confidence 345667899999999999999998 2 12455544 467777776543
No 135
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=49.07 E-value=28 Score=29.93 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 9 IDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 9 mdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
..++++++.++..++|||.-.+-.+...+.+++..||++++.=
T Consensus 168 ~~~~~li~~l~~~~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 168 EPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp SCCHHHHHHHHTTTCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 3467888888755899999888888999999999999999873
No 136
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=47.74 E-value=65 Score=26.66 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=36.8
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe------CCCCHHHHHHH
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE------KPISFDDLKYV 61 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~------KPis~eeL~~~ 61 (277)
.+++++.++.. .+||++..+-.....+.+++..||+.++. .+....++...
T Consensus 186 ~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~ 243 (253)
T 1h5y_A 186 DVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRY 243 (253)
T ss_dssp CHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHH
Confidence 35677777655 89999887777778888888999999875 34455554443
No 137
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=47.56 E-value=18 Score=32.11 Aligned_cols=54 Identities=22% Similarity=0.129 Sum_probs=37.8
Q ss_pred HHHHHHHHHc-CCcEEEEecCC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRR------NEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~------~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
+++++.++.. ++||++|+-.. ....+..+..+|++++|.-.+..+++...+..+
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 5667777765 89999985222 234566788899999999877777766555443
No 138
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=46.28 E-value=37 Score=29.20 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 10 DSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 10 dG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
.++++++.++...+|||.-.+-.+...+.+++..||++++.=
T Consensus 169 ~~~~~i~~l~~~~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 169 PDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp CCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 467888888766999998888888999999999999999863
No 139
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=46.09 E-value=43 Score=28.28 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=40.5
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHc-----C-CcEEEe------CCCCHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVE-----G-ACFFLE------KPISFDDLKYV 61 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~-----G-A~dyL~------KPis~eeL~~~ 61 (277)
+++++.+++. .+|||...+-...+.+..++.. | |++++. .++++.++...
T Consensus 177 ~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 177 FSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp HHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHHHH
Confidence 7888888765 9999998888888999999888 9 998865 57777776654
No 140
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=45.78 E-value=30 Score=29.57 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=34.1
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
+++++.++.. .+|||...+-...+.+.+++..||++++.=
T Consensus 189 ~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 189 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 7888888766 899999988888888888888999998763
No 141
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=43.92 E-value=8.8 Score=27.98 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=34.8
Q ss_pred ccChHHHHHHHHHHHhcCCCCCCcHHHHhhc-CCCCCCHHHHhhccC
Q 045919 232 VWTSELHLKFIEAVSSLGDIKARPKLILQKM-NVPGLTQRQVASHLQ 277 (277)
Q Consensus 232 ~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m-~v~~lt~~~v~shlq 277 (277)
.||.+=.+.|..|+.... +-+|.+--.+- -|||=|.+.|+.|-|
T Consensus 22 ~WT~eE~K~FE~ALa~yp--~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN--KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC--SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 599999999999998885 56776543332 258999999999965
No 142
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=42.38 E-value=87 Score=27.61 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=39.5
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe--CCCCHHHHHHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE--KPISFDDLKYVWQHSY 66 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~--KPis~eeL~~~Lq~vl 66 (277)
++.++.++.. ++||+.---.-+...+..+...||+.+++ .-++.+++...+..+.
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 6777888765 89999765444555688999999999987 4566677666655543
No 143
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=42.24 E-value=42 Score=27.81 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=33.2
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
++++++.++.. .+|||...+-.+...+..++..||+.++.=
T Consensus 163 ~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 163 DFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred cHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEEEEC
Confidence 35677777654 899998888778999999999999998773
No 144
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=42.10 E-value=39 Score=28.56 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=32.6
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
+++++.+++. .+|||+...-.+...+..++..||+.++.-
T Consensus 64 ~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 64 LDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp HHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 4556666655 899999988888999999999999988763
No 145
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=41.89 E-value=67 Score=26.99 Aligned_cols=51 Identities=8% Similarity=-0.007 Sum_probs=39.4
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHc---CCcEEEe------CCCCHHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVE---GACFFLE------KPISFDDLKYVW 62 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~---GA~dyL~------KPis~eeL~~~L 62 (277)
++++++++.. .+|||...+-...+.+.+++.. ||++++. .|+.+.++...+
T Consensus 179 ~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 179 LELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEAT 239 (244)
T ss_dssp HHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHHHHHHh
Confidence 6788888765 8999998888888899999998 9999875 466666555443
No 146
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=41.85 E-value=63 Score=29.78 Aligned_cols=61 Identities=7% Similarity=-0.082 Sum_probs=43.8
Q ss_pred HHHHHHHHHHc-CCcEEEE--ecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHhh
Q 045919 11 SLSFVRVLVKE-EIPIILM--SSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKRR 71 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIll--Ss~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~~ 71 (277)
++++++.+++. .+|||++ .+-..+..+..++..||+++++ +.-++......+..++.....
T Consensus 228 ~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~~~~ 296 (330)
T 2yzr_A 228 LYEVLLEVKKLGRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDK 296 (330)
T ss_dssp HHHHHHHHHHHTSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 45888888764 8999743 3344688899999999999976 445677777777766665443
No 147
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=41.77 E-value=63 Score=22.21 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=34.6
Q ss_pred CCCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHh
Q 045919 225 KKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVA 273 (277)
Q Consensus 225 ~~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~ 273 (277)
..++.|-.||+|=...++++|...|.. .=..|...|...|=|-.+++
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr 51 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLK 51 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSS--CHHHHHHHSCCSSCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC--cHHHHHHHcCcCCCCHHHHH
Confidence 356678889999999999999999932 23667777754465655554
No 148
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=40.41 E-value=50 Score=27.71 Aligned_cols=51 Identities=8% Similarity=-0.000 Sum_probs=39.0
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHc---CCcEEEe------CCCCHHHHHHH
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVE---GACFFLE------KPISFDDLKYV 61 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~---GA~dyL~------KPis~eeL~~~ 61 (277)
.+++++.+++. .+|||...+-...+.+.+++.. ||+.++. .|+.+.++...
T Consensus 181 ~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~~~~~~ 241 (244)
T 2y88_A 181 NLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAA 241 (244)
T ss_dssp CHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHH
T ss_pred CHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHHHHHHH
Confidence 46788887765 8999988888888888999988 9998865 46666655543
No 149
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=39.51 E-value=1.3e+02 Score=26.96 Aligned_cols=59 Identities=7% Similarity=0.054 Sum_probs=46.1
Q ss_pred HHHHHHHHH-c-C-CcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHh
Q 045919 12 LSFVRVLVK-E-E-IPIILMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 12 ~eLL~~Ire-~-~-iPVIllSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~ 70 (277)
..+++.+++ . + +|||+=.+-..+..+..+++.||+++++ +.-++..+...+..++..-+
T Consensus 165 ~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~agr 231 (268)
T 2htm_A 165 RALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGR 231 (268)
T ss_dssp HHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHH
Confidence 567888877 4 7 9999988888999999999999999876 55556777777766665444
No 150
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=36.34 E-value=37 Score=24.44 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=33.2
Q ss_pred ccChHHHHHHHHHHHhcCCCCCCcHHHHhh-cCCCCCCHHHHhhc
Q 045919 232 VWTSELHLKFIEAVSSLGDIKARPKLILQK-MNVPGLTQRQVASH 275 (277)
Q Consensus 232 ~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~-m~v~~lt~~~v~sh 275 (277)
.||.+=+++|..|+..++ +.+|-+-..+ .-|+|=|.++|..|
T Consensus 10 ~WT~eE~k~fe~ALa~~~--~~tp~rWe~IA~~V~gKT~eE~~~h 52 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP--KHKPGFWSEVAAAVGSRSPEECQRK 52 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC--SSSSSHHHHHHHHTTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC--CCCccHHHHHHHHcCCCCHHHHHHH
Confidence 499999999999999986 4578755433 23688999998877
No 151
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=36.28 E-value=1.4e+02 Score=24.67 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
-++++++.++.. .+||++..+- +.+.+..++..||+.+..
T Consensus 151 ~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 151 RGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 357778777654 8999887766 788888999999998865
No 152
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=35.97 E-value=72 Score=27.66 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=38.2
Q ss_pred HHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHS 65 (277)
Q Consensus 11 G~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~v 65 (277)
|++.++.+... .+|||.+.+- +.+.+..++.+||+++.+ +.-++......+...
T Consensus 177 gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~ 238 (243)
T 3o63_A 177 GLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSA 238 (243)
T ss_dssp CHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHH
Confidence 67888887754 7999999776 566778889999999875 444555444444433
No 153
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=35.68 E-value=37 Score=22.70 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=31.4
Q ss_pred CCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhh
Q 045919 226 KRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVAS 274 (277)
Q Consensus 226 ~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~s 274 (277)
+...|-.||+|=..+++++|.+.|.. .=..|-..| +|=|-.+++.
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~ 48 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQ--DWKFLASHF--PNRTDQQCQY 48 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTT--CHHHHHHHC--SSSCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHc--cCCCHHHHHH
Confidence 34556789999999999999999931 124555554 5666666553
No 154
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=35.45 E-value=1e+02 Score=27.68 Aligned_cols=59 Identities=5% Similarity=-0.057 Sum_probs=40.7
Q ss_pred HHHHHHHHHc-CCcEEE--EecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHHHh
Q 045919 12 LSFVRVLVKE-EIPIIL--MSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIl--lSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~~~ 70 (277)
+++++.++.. .+|||+ .++-.....+..++.+||+.++. +.-++......+..++....
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~~~ 262 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNFN 262 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHhhC
Confidence 5677777654 788874 34445788899999999999976 44566665555555555443
No 155
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=34.89 E-value=34 Score=29.51 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=33.9
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCHH---HHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRNEI---FSWRALVEGACFFLEKPISFDDLKYVWQH 64 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~~~---~v~~al~~GA~dyL~KPis~eeL~~~Lq~ 64 (277)
++++++.++.. ++|++++... ++. .+..+..+||++++.-....+++...+..
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSE 138 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHH
Confidence 45667777765 8999887522 111 12348899999999876665555544443
No 156
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=33.71 E-value=52 Score=28.06 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=33.1
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
+++++.+++. .+|||+.....+...+..++..||+..+.=
T Consensus 63 ~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 63 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 6788888765 899999877777788889999999998764
No 157
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=33.60 E-value=25 Score=31.13 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=32.9
Q ss_pred CCcEEEEecC------CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 22 EIPIILMSSR------RNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 22 ~iPVIllSs~------~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
.+|+|+|+-. +-.....+|.++|++++|.--+.+++.. .+....++
T Consensus 88 ~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~-~~~~~~~~ 139 (252)
T 3tha_A 88 KKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESD-DLIKECER 139 (252)
T ss_dssp SSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCH-HHHHHHHH
T ss_pred CCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHH-HHHHHHHH
Confidence 4899998753 3345678889999999999888887744 34444444
No 158
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=33.25 E-value=78 Score=26.63 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=32.0
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
+++++.+++. .+||++...-.+...+..++..||+.++.-
T Consensus 63 ~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 63 LELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp HHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4556666654 899999888888888999999999988764
No 159
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=32.92 E-value=1.7e+02 Score=25.06 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=40.1
Q ss_pred cccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHH
Q 045919 3 NVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDL 58 (277)
Q Consensus 3 Dl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL 58 (277)
.+.+..-++++.++.+++. .-.+|-.-..-+.+.+..++.+||...+..-++++.+
T Consensus 43 Evt~~t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi 99 (217)
T 3lab_A 43 EVTLRTEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELI 99 (217)
T ss_dssp EEETTSTTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHH
T ss_pred EEeCCCccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHH
Confidence 3444455788999988765 4466666677788999999999998776655555433
No 160
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=31.89 E-value=1.4e+02 Score=22.63 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 12 LSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 12 ~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
.++++.++...++++++|+.........+-..|...|+..
T Consensus 42 ~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~ 81 (162)
T 2p9j_A 42 GIGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTG 81 (162)
T ss_dssp HHHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccC
Confidence 4778888877899999998877766666667788888854
No 161
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=31.89 E-value=77 Score=27.19 Aligned_cols=41 Identities=12% Similarity=-0.055 Sum_probs=33.6
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
.+++++.+++. ++||++-.+-.+.+.+..++..||+.+++=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 45677777765 899998888777899999999999999864
No 162
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=31.78 E-value=1.2e+02 Score=26.32 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=30.9
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
+++++.+++. .+|||...+-.+...+.+++..||+.+..
T Consensus 230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~v 269 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAV 269 (311)
T ss_dssp HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 4677777665 89999877777888999999999987643
No 163
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=31.46 E-value=83 Score=25.61 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHc--CCcEEE--EecCCCHHHHHHHHHcCCcEEEeCCCCH-HHHHH
Q 045919 10 DSLSFVRVLVKE--EIPIIL--MSSRRNEIFSWRALVEGACFFLEKPISF-DDLKY 60 (277)
Q Consensus 10 dG~eLL~~Ire~--~iPVIl--lSs~~~~~~v~~al~~GA~dyL~KPis~-eeL~~ 60 (277)
.|.++++.+++. +.|+++ +..+.....+..+..+||+.+...+... +.+..
T Consensus 39 ~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~ 94 (207)
T 3ajx_A 39 EGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAG 94 (207)
T ss_dssp HCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHH
T ss_pred hCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHH
Confidence 356778888765 678875 4432123347788999999998777655 44443
No 164
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=31.20 E-value=89 Score=25.36 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
.+++.++.++.. .+||++..+-. .+.+..++..|++++..
T Consensus 149 ~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 149 IGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp CHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred cCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 467888887654 89988776655 67777888899999864
No 165
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=30.99 E-value=80 Score=20.22 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=30.7
Q ss_pred ccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhc
Q 045919 230 RIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASH 275 (277)
Q Consensus 230 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~sh 275 (277)
|-.||+|=...++++|.+.|. ..=..|-..| +|=|..+++.|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~--~~W~~Ia~~~--~~Rt~~qcr~R 44 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT--DDWKVIANYL--PNRTDVQCQHR 44 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS--SCHHHHHHTS--TTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC--CCHHHHHHHc--CCCCHHHHHHH
Confidence 457999999999999999994 2235666665 57676666543
No 166
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=30.68 E-value=58 Score=28.61 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=36.6
Q ss_pred CCCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhcc
Q 045919 225 KKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHL 276 (277)
Q Consensus 225 ~~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shl 276 (277)
...+..-.||++=+..|++|+...|=+ =..|-++ |++=|..+|++|-
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~--VgTKT~~QcKnfY 174 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGRD---FQAISDV--IGNKSVVQVKNFF 174 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHH--HSSCCHHHHHHHH
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHH--cCCCCHHHHHHHH
Confidence 344667789999999999999999922 4556665 5788888888873
No 167
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=30.02 E-value=43 Score=25.06 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=32.2
Q ss_pred ccChHHHHHHHHHHHhcCCCCCCcH---HHHhhcCCCCCCHHHHhhc
Q 045919 232 VWTSELHLKFIEAVSSLGDIKARPK---LILQKMNVPGLTQRQVASH 275 (277)
Q Consensus 232 ~Wt~~lh~~Fv~av~~lg~~~a~pk---~il~~m~v~~lt~~~v~sh 275 (277)
.||++=...|..|+..+|.+ +|. .|-..| ||=|-.+|+.|
T Consensus 10 ~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~v--pGRT~~q~k~r 52 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKD--TPDRWANVARAV--EGRTPEEVKKH 52 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHS--TTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHc--CCCCHHHHHHH
Confidence 59999999999999999843 564 455554 79999998877
No 168
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=29.92 E-value=93 Score=25.95 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 11 SLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 11 G~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
.+++++.++...+||+...+-.+.+.+..++.+||+.++.=
T Consensus 175 ~~~~i~~~~~~~ipvia~GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 175 DVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred CHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 35777777654899998887777999999999999998763
No 169
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=29.63 E-value=1.7e+02 Score=22.44 Aligned_cols=49 Identities=10% Similarity=-0.034 Sum_probs=32.4
Q ss_pred HcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHHH
Q 045919 20 KEEIPIILMSSRRNEIFSWRALVEGACFFLEKP--ISFDDLKYVWQHSYIY 68 (277)
Q Consensus 20 e~~iPVIllSs~~~~~~v~~al~~GA~dyL~KP--is~eeL~~~Lq~vlr~ 68 (277)
...+|+|++....+.....+.+...-.+++..+ ++.++|..+|..++..
T Consensus 104 ~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 154 (170)
T 2o6l_A 104 YHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154 (170)
T ss_dssp HHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred HcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcC
Confidence 348999988765444433444444445566655 4889999999988743
No 170
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=29.62 E-value=33 Score=23.01 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=28.5
Q ss_pred ccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhc
Q 045919 232 VWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASH 275 (277)
Q Consensus 232 ~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~sh 275 (277)
.||++=+.++++||+..|.. -=..|-+.|+. |=|..+++.|
T Consensus 11 ~WT~eED~~L~~~v~~~G~~--~W~~IA~~~~~-~Rt~~qcr~r 51 (58)
T 2elk_A 11 NWGADEELLLIDACETLGLG--NWADIADYVGN-ARTKEECRDH 51 (58)
T ss_dssp CCCHHHHHHHHHHHHHTTTT--CHHHHHHHHCS-SCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcC--CHHHHHHHHCC-CCCHHHHHHH
Confidence 59999999999999999932 22455555531 5566666554
No 171
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=29.59 E-value=67 Score=27.22 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=32.9
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
+++++.+++. .+|||+-..-.+.+.+..++..||+..+.
T Consensus 68 ~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 68 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 6788888765 89999988888888999999999887765
No 172
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=29.58 E-value=49 Score=23.22 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=29.7
Q ss_pred CCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhh
Q 045919 226 KRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVAS 274 (277)
Q Consensus 226 ~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~s 274 (277)
.++..-.||++=|..|.+|+..-|-+ =..|-..| ||+-|..+|..
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v~ 48 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGKD---FNDIRQDF-LPWKSLTSIIE 48 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCSC---HHHHHHTT-CSSSCHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCCHHHHHH
Confidence 34566789999999999999999932 13333211 45666665543
No 173
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=28.99 E-value=2.1e+02 Score=22.79 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=32.6
Q ss_pred HHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCC
Q 045919 14 FVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPIS 54 (277)
Q Consensus 14 LL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis 54 (277)
+++.++...+++.++|+.........+-..|...|+..+.+
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~~~ 94 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGRED 94 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSCSC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCcCC
Confidence 67778778999999999888776666677899999876643
No 174
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=28.59 E-value=88 Score=25.82 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
+++++.+++. .+||++.....+...+..++..||+.+..-
T Consensus 66 ~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~ 106 (253)
T 1h5y_A 66 IDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVN 106 (253)
T ss_dssp HHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5666676654 899998877778888889999999887753
No 175
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.58 E-value=1.4e+02 Score=20.40 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=31.3
Q ss_pred CCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhh
Q 045919 227 RKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVAS 274 (277)
Q Consensus 227 ~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~s 274 (277)
...|=.||++=..+++++|...|. ..=..|-..|+ |=|..+++-
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~--~~W~~Ia~~l~--~Rt~~qcr~ 49 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGK--NQWSRIASLLH--RKSAKQCKA 49 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCS--SCHHHHHHHST--TCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc--CCHHHHHHHhc--CCCHHHHHH
Confidence 344668999999999999999993 12356666664 666665543
No 176
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=28.52 E-value=85 Score=26.58 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 6 ISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 6 mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
||+.-. ++++.+++. .+|||+=-.-.+.+.+..++.+||+..-.
T Consensus 134 LPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 134 LPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp ECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred CCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 566443 678887766 99999877778899999999999998765
No 177
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=27.81 E-value=41 Score=25.82 Aligned_cols=50 Identities=16% Similarity=0.043 Sum_probs=33.8
Q ss_pred CCCCCCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcC--CCCCCHHHHh
Q 045919 222 HVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMN--VPGLTQRQVA 273 (277)
Q Consensus 222 ~~~~~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~--v~~lt~~~v~ 273 (277)
.....++.|-.||+|=...++++|+..|.. .=+.|+..+. .+|=|.-+++
T Consensus 5 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g--~W~~I~~~~~~~f~~RT~v~lK 56 (105)
T 2aje_A 5 LEDPQRRIRRPFSVAEVEALVQAVEKLGTG--RWRDVKLCAFEDADHRTYVDLK 56 (105)
T ss_dssp ----CCCCCCSCCHHHHHHHHHHHHHHCSS--SHHHHHSSSSSSTTCCCHHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCC--ChHHHHHHhccccCCCCHHHHH
Confidence 444577889999999999999999999942 1245666542 2666665554
No 178
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.62 E-value=1.9e+02 Score=21.47 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=37.1
Q ss_pred cCCcEEEEecCCCHHH----HHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919 21 EEIPIILMSSRRNEIF----SWRALVEGACFFLEKPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 21 ~~iPVIllSs~~~~~~----v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~ 68 (277)
..-|++++........ ..++-..|+..-++|..++++|-..++..+..
T Consensus 50 ngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflkt 101 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKT 101 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHh
Confidence 3788888877666544 34556679988899999999999998887764
No 179
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=27.62 E-value=1.4e+02 Score=27.40 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919 34 EIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI 67 (277)
Q Consensus 34 ~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr 67 (277)
.+....++.+|..-++-||++.++....++.+-+
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHH
Confidence 4668899999999999999999988877765543
No 180
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=27.35 E-value=1.4e+02 Score=29.01 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=40.7
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHH-cCCcEEEe------CCCCHHHHHHHH
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALV-EGACFFLE------KPISFDDLKYVW 62 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~-~GA~dyL~------KPis~eeL~~~L 62 (277)
+++++.+.+. .+|||.-..-.+.+.+.+++. .|+++.+. .|+...+++..+
T Consensus 485 ~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l 543 (555)
T 1jvn_A 485 LELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL 543 (555)
T ss_dssp HHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHH
Confidence 7888888765 899998777788899999987 89999875 477777776543
No 181
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=27.03 E-value=2.4e+02 Score=22.45 Aligned_cols=57 Identities=14% Similarity=-0.014 Sum_probs=34.8
Q ss_pred HHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919 13 SFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR 70 (277)
Q Consensus 13 eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~ 70 (277)
++++.+++. +++|++ .+.........+...|++.++..-.+..+....+...+..+.
T Consensus 88 ~~i~~L~~~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~~ 147 (161)
T 2yxb_A 88 RLMAKLRELGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEKR 147 (161)
T ss_dssp HHHHHHHHTTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHhh
Confidence 344455554 466554 444444444456679999877655666777777777776654
No 182
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=26.64 E-value=1e+02 Score=27.61 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 9 IDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 9 mdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
...+.++..++.. ++|||+..+-.+...+..++..||+++..
T Consensus 148 ~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 148 LTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp SCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 3467888887754 89999888877788899999999998765
No 183
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=25.88 E-value=67 Score=27.33 Aligned_cols=54 Identities=13% Similarity=-0.037 Sum_probs=37.4
Q ss_pred HHHHHHHHHHc-CCcEE--EEecCCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE-EIPII--LMSSRRNEIFSWRALVEGACFFLEKPI--SFDDLKYVWQHS 65 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVI--llSs~~~~~~v~~al~~GA~dyL~KPi--s~eeL~~~Lq~v 65 (277)
|+++++.++.. +.|+. +|..+. ...+..+..+||+.+..... ..+.+...++.+
T Consensus 50 g~~~v~~lr~~~~~~~~vhlmv~dp-~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 50 GPLIVDAIRPLTKKTLDVHLMIVEP-EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQI 108 (230)
T ss_dssp CHHHHHHHGGGCCSEEEEEEESSSG-GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHH
T ss_pred hHHHHHHHHhhcCCcEEEEEEccCH-HHHHHHHHHcCCCEEEECcccccchhHHHHHHHH
Confidence 56889999876 56776 676543 44678889999999987765 444555555544
No 184
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=25.79 E-value=1.5e+02 Score=24.26 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=29.6
Q ss_pred HHHHHHHHHHc-C-CcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 11 SLSFVRVLVKE-E-IPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 11 G~eLL~~Ire~-~-iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
++++++.++.. . +||++..+-. .+.+..++..||+++..
T Consensus 159 ~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 159 GVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp TTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 67888887765 6 9988876655 66667788899998865
No 185
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=25.54 E-value=1.2e+02 Score=25.47 Aligned_cols=40 Identities=13% Similarity=-0.020 Sum_probs=31.5
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
+++++.++.. .+||++-.+-...+.+..++..||+.++.=
T Consensus 180 ~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 180 YDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 4566777655 899887777777688888889999999874
No 186
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=25.41 E-value=1.5e+02 Score=26.60 Aligned_cols=51 Identities=14% Similarity=-0.059 Sum_probs=38.0
Q ss_pred HHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 13 SFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 13 eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
+.++.+++. ..||.+-. .+.+.+.+++.+||+..+.-.+++++|..+++.+
T Consensus 187 ~Av~~ar~~~~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 187 KAVTKAKKLDSNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp HHHHHHHHHCTTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 445555543 56776633 3457888999999999999999999998887754
No 187
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=25.24 E-value=1.5e+02 Score=24.03 Aligned_cols=55 Identities=5% Similarity=-0.071 Sum_probs=36.7
Q ss_pred HHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSY 66 (277)
Q Consensus 11 G~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vl 66 (277)
+++.++.+++. .+||++-.+- ....+..++.+||+.++. +.-++.+....+...+
T Consensus 146 ~~~~i~~l~~~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~ 207 (211)
T 3f4w_A 146 PIDDLITMLKVRRKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVL 207 (211)
T ss_dssp SHHHHHHHHHHCSSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHH
Confidence 46777777764 7888765555 477788889999999865 4555555444444433
No 188
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=24.09 E-value=1.4e+02 Score=26.56 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
..++++..++.. ++|||+-.+-.+...+..++..||+++..
T Consensus 159 ~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 159 PGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp CHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 567888888765 89999887777788888999999998875
No 189
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=23.89 E-value=2.8e+02 Score=23.90 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=36.6
Q ss_pred cccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHH
Q 045919 3 NVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFD 56 (277)
Q Consensus 3 Dl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~e 56 (277)
.+.+-.-++++.++.+++. .-.+|-....-..+.+..++.+||+..+.--++++
T Consensus 64 Evt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~~~~ 118 (232)
T 4e38_A 64 EITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPGFNPN 118 (232)
T ss_dssp EEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSSCCHH
T ss_pred EEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 3445556788899888764 33455555566788899999999986655434443
No 190
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=23.33 E-value=2.3e+02 Score=25.58 Aligned_cols=51 Identities=16% Similarity=0.065 Sum_probs=38.9
Q ss_pred HHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919 13 SFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS 65 (277)
Q Consensus 13 eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v 65 (277)
+.++.++.. ..||.+-.. +.+.+.+++.+||+-.+.--++++++..++..+
T Consensus 196 ~Av~~ar~~~p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHHSSSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 344555543 677776544 468888999999999999999999999888754
No 191
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=23.19 E-value=1.6e+02 Score=23.95 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHc--CCcEEE--EecCCCHHHHHHHHHcCCcEEEeCCCCH
Q 045919 10 DSLSFVRVLVKE--EIPIIL--MSSRRNEIFSWRALVEGACFFLEKPISF 55 (277)
Q Consensus 10 dG~eLL~~Ire~--~iPVIl--lSs~~~~~~v~~al~~GA~dyL~KPis~ 55 (277)
.|+++++.+++. ++||.+ +..+.....+..+..+||+.++......
T Consensus 39 ~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~ 88 (211)
T 3f4w_A 39 EGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD 88 (211)
T ss_dssp HTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred ccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC
Confidence 467788888765 778754 3333333348899999999998865543
No 192
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=22.60 E-value=96 Score=26.02 Aligned_cols=39 Identities=13% Similarity=-0.046 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 12 LSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 12 ~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
+++++.++...+||++...-.+...+..++..||+.++.
T Consensus 63 ~~~i~~i~~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l 101 (241)
T 1qo2_A 63 LPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp HHHHHHGGGGGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 567777662389999998888889999999999988766
No 193
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=22.48 E-value=2.8e+02 Score=21.62 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCH
Q 045919 12 LSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISF 55 (277)
Q Consensus 12 ~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~ 55 (277)
.++++.+++..++++++|+.........+-..|...|+.-..+.
T Consensus 41 ~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~k 84 (180)
T 1k1e_A 41 GLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEK 84 (180)
T ss_dssp HHHHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEESCSCH
T ss_pred HHHHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeecCCCCc
Confidence 46778888789999999998777666666677888888654333
No 194
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=22.31 E-value=1.2e+02 Score=27.07 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
..+.++..++.. .+|||+-.+-.+...+..++..||+++..
T Consensus 163 ~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 163 TTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp CHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 467888887654 89999888888788899999999999875
No 195
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=22.21 E-value=1.6e+02 Score=26.71 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 10 DSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 10 dG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
..+.++..++.. .+|||+..+-.+...+..++..||+.+..
T Consensus 195 ~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 195 GLLSLLAQVREAVDIPVVAAGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp CHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 458888888754 89999887777888999999999988765
No 196
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=21.72 E-value=1.5e+02 Score=26.52 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=37.4
Q ss_pred HHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919 14 FVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY 66 (277)
Q Consensus 14 LL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl 66 (277)
.++.+++. ..+|.+- . .+.+.+.+++.+||+.++.-+++++.+..+++.+-
T Consensus 182 av~~ar~~~~~~~~I~VE-V-~tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~ 235 (285)
T 1o4u_A 182 AVQEVRKIIPFTTKIEVE-V-ENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIK 235 (285)
T ss_dssp HHHHHHTTSCTTSCEEEE-E-SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCceEEEE-e-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 44455544 2455553 3 35788899999999999999999999998877653
No 197
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=21.26 E-value=1.6e+02 Score=18.76 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=29.0
Q ss_pred ccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhh
Q 045919 230 RIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVAS 274 (277)
Q Consensus 230 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~s 274 (277)
|-.||+|=...++++|.+.|.. .=..|-..| +|=|..+++.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~ 43 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK--RWSVIAKHL--KGRIGKQCRE 43 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT--CHHHHHTTS--TTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC--hHHHHHHHc--CCCCHHHHHH
Confidence 4479999999999999999931 124555554 5666666654
No 198
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=21.23 E-value=2.5e+02 Score=22.11 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=29.2
Q ss_pred HHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 045919 14 FVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKP 52 (277)
Q Consensus 14 LL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KP 52 (277)
+++.++...++++++|+.........+-..|...|+...
T Consensus 61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~ 99 (188)
T 2r8e_A 61 GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQ 99 (188)
T ss_dssp HHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecCC
Confidence 577777778999999998777665555567888887643
No 199
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=21.15 E-value=64 Score=28.04 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCC
Q 045919 11 SLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPIS 54 (277)
Q Consensus 11 G~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis 54 (277)
-+++++.+++.++|+|+|+...+. +..|++++|.--+.
T Consensus 50 ~~~~v~~ir~~~~Pivl~~y~~n~------i~~gvDg~iipdLp 87 (234)
T 2f6u_A 50 ARTLIEKVSQYGLPIVVEPSDPSN------VVYDVDYLFVPTVL 87 (234)
T ss_dssp HHHHHHHHTTSCCCEEECCSSCCC------CCCCSSEEEEEEET
T ss_pred HHHHHHHhcCCCCCEEEecCCcch------hhcCCCEEEEcccC
Confidence 456777776668999999887432 27899999986433
No 200
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=21.00 E-value=2.4e+02 Score=24.63 Aligned_cols=54 Identities=7% Similarity=-0.040 Sum_probs=37.3
Q ss_pred HHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC----CCHHHHHHHHHHHHH
Q 045919 14 FVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKP----ISFDDLKYVWQHSYI 67 (277)
Q Consensus 14 LL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KP----is~eeL~~~Lq~vlr 67 (277)
.+.+.....+|+|++....+.......+..+-.+++..| .+.+.|..++..++.
T Consensus 298 t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~ 355 (391)
T 3tsa_A 298 TAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLG 355 (391)
T ss_dssp HHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHc
Confidence 333444459999998654554444455555556778877 899999999998884
No 201
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=20.98 E-value=1.6e+02 Score=26.32 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 8 NIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 8 dmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
+....+.+..+... .+|||...+-.+...+.+++..||+.++.=
T Consensus 235 g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 235 GISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 34567777776653 799999988899999999999999998763
No 202
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=20.89 E-value=63 Score=28.18 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 045919 11 SLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLE 50 (277)
Q Consensus 11 G~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~ 50 (277)
.+++++.+++.++|+|+|+...+.- ..|+++||.
T Consensus 50 ~~~~v~~ir~~~~Pivlm~y~~n~i------~~G~dg~ii 83 (240)
T 1viz_A 50 VLRMMSKVRRFLVPCVLEVSAIEAI------VPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTTSSSCEEEECSCGGGC------CSCCSEEEE
T ss_pred HHHHHHHhhCcCCCEEEecCccccc------cCCCCEEEE
No 203
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=20.75 E-value=1.8e+02 Score=25.11 Aligned_cols=40 Identities=13% Similarity=-0.018 Sum_probs=32.4
Q ss_pred HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 045919 12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEK 51 (277)
Q Consensus 12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~K 51 (277)
.++++.+++. ++||++=.+-...+.+..++..||+.+++=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5788888876 889877666666888889899999999874
No 204
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=20.72 E-value=1.8e+02 Score=24.70 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=36.5
Q ss_pred HHHHHHHHHHc-CCcEEEEecCCC--HHH----HHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE-EIPIILMSSRRN--EIF----SWRALVEGACFFLE-----KPISFDDLKYVWQHSYI 67 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVIllSs~~~--~~~----v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr 67 (277)
++++++.+... .+||++..+-.. .+. +..++..||+++.. +.-++.+....+..+++
T Consensus 190 ~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~~~~~ 258 (273)
T 2qjg_A 190 DIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVCKIVH 258 (273)
T ss_dssp SHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHHHHHh
Confidence 57778777654 899999877663 333 56667899998864 33345544444444443
No 205
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=20.68 E-value=2e+02 Score=25.60 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=34.3
Q ss_pred HHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 045919 14 FVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQH 64 (277)
Q Consensus 14 LL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~ 64 (277)
.++.+++. ..+|.+ +. .+.+.+.+++.+||+.++.-|+.++.++.+++.
T Consensus 185 av~~ar~~~~~~~~IgV-ev-~t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~ 236 (286)
T 1x1o_A 185 AVRRAKARAPHYLKVEV-EV-RSLEELEEALEAGADLILLDNFPLEALREAVRR 236 (286)
T ss_dssp HHHHHHHHSCTTSCEEE-EE-SSHHHHHHHHHHTCSEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEE-Ee-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 34445543 234444 44 447788899999999999999999998866543
No 206
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=20.55 E-value=1.5e+02 Score=25.82 Aligned_cols=58 Identities=7% Similarity=-0.039 Sum_probs=37.9
Q ss_pred HHHHHHHHHHc-CCcEE--EEecCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHH
Q 045919 11 SLSFVRVLVKE-EIPII--LMSSRRNEIFSWRALVEGACFFLE-----KPISFDDLKYVWQHSYIY 68 (277)
Q Consensus 11 G~eLL~~Ire~-~iPVI--llSs~~~~~~v~~al~~GA~dyL~-----KPis~eeL~~~Lq~vlr~ 68 (277)
++++++.++.. .+||| +..+-.+.+.+..++.+||+.++. +.-++......+...+..
T Consensus 195 ~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~ 260 (297)
T 2zbt_A 195 PFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAH 260 (297)
T ss_dssp CHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHH
Confidence 35667777654 78877 333334788889999999999875 333555555555555443
No 207
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=20.44 E-value=2.8e+02 Score=20.89 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC
Q 045919 14 FVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPI 53 (277)
Q Consensus 14 LL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi 53 (277)
+++.++...++++++|+.........+-..|...|+...-
T Consensus 39 ~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~k 78 (164)
T 3e8m_A 39 GIFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGVV 78 (164)
T ss_dssp HHHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSCS
T ss_pred HHHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeecccC
Confidence 4677777889999999987776666666789988887543
Done!