BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045920
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 11/186 (5%)
Query: 5 VIDETWFSSSVFCKENK--KW-YPLAKTLAEEAAWKFARENGIDLVAINPGIVIGPFFHP 61
V DE+ +S FC+ K W Y ++KTLAE+AAWK+A+EN ID + I P +V+GPF
Sbjct: 141 VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMS 200
Query: 62 ILNFGADVILNLINGAQSFPSPYR---FVDIRDVAYAQIQALEVPTANGRYLLVGSVVQL 118
+ L+ I G ++ S R FV + D+ A I E P A GRY+ +
Sbjct: 201 SMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPKAEGRYICSSHDCII 260
Query: 119 YDILKFLHEHYPTLLVAGKF---DAKYEPTCKVSQERAKSLGINFT-PWEVGVRDTVESL 174
D+ K L E YP + +F D + C S ++ LG F E V++
Sbjct: 261 LDLAKMLREKYPEYNIPTEFKGVDENLKSVC-FSSKKLTDLGFEFKYSLEDMFTGAVDTC 319
Query: 175 KEKGFL 180
+ KG L
Sbjct: 320 RAKGLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 23/198 (11%)
Query: 4 VVIDETWFSSSVFCKENK--KW-YPLAKTLAEEAAWKFARENGIDLVAINPGIVIGPFFH 60
+V+DE ++ F K W YP +KTLAE+AAWKFA EN IDL+ + P ++ G
Sbjct: 145 LVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLT 204
Query: 61 P----------ILNFGADVILNLINGAQSFPSPYRFVDIRDVAYAQIQALEVPTANGRYL 110
L G + ++N + G Q + DV A I E +A+GRY+
Sbjct: 205 SDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESASGRYI 264
Query: 111 LVGSVVQLYDILKFLHEHYPTLLVAGKFDAKYEPTCK--VSQERAKSLGINFTPWEVGVR 168
+ + ++ KFL + YP V F + P K +S E+ G +F + G+
Sbjct: 265 CCAANTSVPELAKFLSKRYPQYKVPTDF-GDFPPKSKLIISSEKLVKEGFSF---KYGIE 320
Query: 169 ----DTVESLKEKGFLSS 182
++VE K KG L +
Sbjct: 321 EIYDESVEYFKAKGLLQN 338
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 9/185 (4%)
Query: 5 VIDETWFSSSVFCKENKKW---YPLAKTLAEEAAWKFARENGIDLVAINPGIVIGPFFHP 61
V+DE+ +S + K + Y ++KTLAE+A +F +NGID+V + ++G F P
Sbjct: 138 VLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCP 197
Query: 62 ILNFGADVILNLINGAQSFPSPYRF--VDIRDVAYAQIQALEVPTANGRYLLVGSVVQLY 119
L + L L+ G + RF V + DVA A I LE GRY +V +
Sbjct: 198 KLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIE 257
Query: 120 DILKFLHEHYPTLLVAGKFDAKYEPTCKVSQERAKSL---GINFT-PWEVGVRDTVESLK 175
++ + L YP + + K ++ K L G +F E D ++ K
Sbjct: 258 EMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCK 317
Query: 176 EKGFL 180
EKG+L
Sbjct: 318 EKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 11/162 (6%)
Query: 24 YPLAKTLAEEAAWKFARENG--IDLVAINPGIVIGPFFHPILNFGADV--ILNLING--- 76
Y +KT AE AAWKF EN L A+ P IG F P G+ +++L NG
Sbjct: 176 YAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVS 235
Query: 77 -AQSFPSPYRFVDIRDVAYAQIQALEVPTANGRYLL-VGSVVQLYDILKFLHEHYPTLLV 134
A + P +V D+ + L +P R + +L + YP+
Sbjct: 236 PALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTF 295
Query: 135 AGKFDAKYEPTCKVSQERAKSLGINFTPWEVGVRDTVESLKE 176
F + + K + A SL I + G R ES+K+
Sbjct: 296 PADFPDQGQDLSKF--DTAPSLEILKSLGRPGWRSIEESIKD 335
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 62/162 (38%), Gaps = 11/162 (6%)
Query: 24 YPLAKTLAEEAAWKFARENG--IDLVAINPGIVIGPFFHPILN--FGADVILNLING--- 76
Y +KT AE AAWKF EN L A+ P IG F P + +L NG
Sbjct: 176 YAASKTEAELAAWKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXSLFNGEVS 235
Query: 77 -AQSFPSPYRFVDIRDVAYAQIQALEVPTANGRYLL-VGSVVQLYDILKFLHEHYPTLLV 134
A + P +V D+ + L +P R + +L + YP+
Sbjct: 236 PALALXPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTF 295
Query: 135 AGKFDAKYEPTCKVSQERAKSLGINFTPWEVGVRDTVESLKE 176
F + + K + A SL I + G R ES+K+
Sbjct: 296 PADFPDQGQDLSKF--DTAPSLEILKSLGRPGWRSIEESIKD 335
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 20 NKKWYPLAKTLAEEAAWKFARENGIDLVAINPGIVIGPFFHPILNFG---ADVILNLING 76
K Y L K +E A + AR NG+ +V PG+V+G L+ G VI + NG
Sbjct: 151 GKSSYVLCKWALDEQAREQAR-NGLPVVIGIPGMVLGE-----LDIGPTTGRVITAIGNG 204
Query: 77 AQSF--PSPYRFVDIRDVAYAQIQALEVPTANGRYLLVGSVVQLYDILKFLHE 127
+ +D + + ALE RYLL G +++ D+ + + E
Sbjct: 205 EMTHYVAGQRNVIDAAEAGRGLLMALERGRIGERYLLTGHNLEMADLTRRIAE 257
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 69 VILNLINGAQSFPSPYRFVDIRDVAYAQIQALEVPTANGRYLLVGSVVQLYDILKFLHEH 128
+LN +NG S P P I+ V + L+VP A+ G+ VQLYD ++
Sbjct: 295 AVLNALNGGSSTPPPSGGGQIKGVGSGRC--LDVPNAS---TTDGTQVQLYDCHSATNQQ 349
Query: 129 Y 129
+
Sbjct: 350 W 350
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 69 VILNLINGAQSFPSPYRFVDIRDVAYAQIQALEVPTANGRYLLVGSVVQLYDILKFLHEH 128
+LN +NG S P P I+ V + L+VP A+ G+ VQLYD ++
Sbjct: 295 AVLNALNGGSSTPPPSGGGQIKGVGSGRC--LDVPNAS---TTDGTQVQLYDCHSATNQQ 349
Query: 129 Y 129
+
Sbjct: 350 W 350
>pdb|2BHM|A Chain A, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|B Chain B, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|C Chain C, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|D Chain D, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|E Chain E, Crystal Structure Of Virb8 From Brucella Suis
Length = 164
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 3 DVVIDETWFSSSVFCKENKKWYPLAK 28
D V+D+ W S V +E WY L K
Sbjct: 24 DTVMDKYWLSQYVIARETYDWYTLQK 49
>pdb|4AKY|A Chain A, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|B Chain B, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|C Chain C, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|D Chain D, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|E Chain E, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKZ|A Chain A, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|B Chain B, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|C Chain C, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|D Chain D, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|E Chain E, Crystal Structure Of Virb8 From Brucella Suis
Length = 138
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 3 DVVIDETWFSSSVFCKENKKWYPLAK 28
D V+D+ W S V +E WY L K
Sbjct: 3 DTVMDKYWLSQYVIARETYDWYTLQK 28
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 41 ENGIDLVAINPGIVIGPFFHPILNFGADVILNLINGAQSFPSPYRFVDIRDVAYAQIQAL 100
+N I LV + + +GP PI G NL++G S + + RD A +++A
Sbjct: 172 DNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRA-VRLKAA 230
Query: 101 EVPTA 105
+P A
Sbjct: 231 RLPVA 235
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 9 TWFSSSVFCKENKKWYPLAKTLAEEAAWKFARENGIDLVAINPGIVIGPFFHPILNFG 66
+WFS F +E K+ PLA + FA DL + P ++I + P+ + G
Sbjct: 216 SWFSEQYFSREEDKFNPLASVI-------FA-----DLENLPPALIITAEYDPLRDEG 261
>pdb|3FK4|A Chain A, Crystal Structure Of Rubisco-Like Protein From Bacillus
Cereus Atcc 14579
pdb|3FK4|B Chain B, Crystal Structure Of Rubisco-Like Protein From Bacillus
Cereus Atcc 14579
Length = 414
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 19 ENKKWYPLAKTLAEEAAWKFARENGIDLVAINPGIVIGPFFHPILNFGADVILNLINGAQ 78
E ++ ++K L E+ A F + + I+PG V PF + +FG DV++N G
Sbjct: 310 EKEEALAISKYLTEDDA-SFKKSFSVPSAGIHPGFV--PFI--VRDFGKDVVINAGGGIH 364
Query: 79 SFPS 82
P+
Sbjct: 365 GHPN 368
>pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
Length = 261
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 43 GIDLVAINPGIVIGPFFHPILNFGADVILNLINGAQSFPSPYRFVDIRDVAYAQIQALEV 102
GI +V I PG+ F P+L D + N + A P P R D + A+ +E
Sbjct: 190 GIRVVTIAPGL----FATPLLTTLPDTVRNFL--ASQVPFPSRLGDPAEYAHLVQMVIEN 243
Query: 103 PTANGRYLLVGSVVQL 118
P NG + + +++
Sbjct: 244 PFLNGEVIRLDGAIRM 259
>pdb|2PNW|A Chain A, Crystal Structure Of Membrane-Bound Lytic Murein
Transglycosylase From Agrobacterium Tumefaciens
Length = 380
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 84 YRFVDIRDVAYAQIQALEVPTANGRYLLVGSVVQLYDILKFLHEHYPTLLVAGK 137
+R D+ + I A +VP GR L V ++ + + F+H T L GK
Sbjct: 261 FREADVAGLDMGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGK 314
>pdb|3I09|A Chain A, Crystal Structure Of A Periplasmic Binding Protein
(Bma2936) From Burkholderia Mallei At 1.80 A Resolution
pdb|3I09|B Chain B, Crystal Structure Of A Periplasmic Binding Protein
(Bma2936) From Burkholderia Mallei At 1.80 A Resolution
Length = 375
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 13 SSVFCKENKKWYPLAKTLAEEAAWKFARENGIDLVAINPGIVIGPFFHPI 62
S+V + K W+ L A+ A K +N D+V N G V+G HP+
Sbjct: 133 SAVVKQGGKTWFFLT---ADYAFGKALEKNTADVVKANGGKVLGEVRHPL 179
>pdb|1E6W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
Length = 260
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 43 GIDLVAINPGIVIGPFFHPILNFGADVILNLINGAQSFPSPYRFVDIRDVAYAQIQALEV 102
GI +V I PG+ F P+L D + N + A P P R D + A+ +E
Sbjct: 189 GIRVVTIAPGL----FATPLLTTLPDKVRNFL--ASQVPFPSRLGDPAEYAHLVQMVIEN 242
Query: 103 PTANGRYLLVGSVVQL 118
P NG + + +++
Sbjct: 243 PFLNGEVIRLDGAIRM 258
>pdb|1E3S|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
Length = 261
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 43 GIDLVAINPGIVIGPFFHPILNFGADVILNLINGAQSFPSPYRFVDIRDVAYAQIQALEV 102
GI +V I PG+ F P+L D + N + A P P R D + A+ +E
Sbjct: 190 GIRVVTIAPGL----FATPLLTTLPDKVRNFL--ASQVPFPSRLGDPAEYAHLVQMVIEN 243
Query: 103 PTANGRYLLVGSVVQL 118
P NG + + +++
Sbjct: 244 PFLNGEVIRLDGAIRM 259
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 144 PTCKVSQERAKSLGINFTPWEVGVRDTVESL 174
PT + E + I+FT W+VG +D + SL
Sbjct: 47 PTIGFNVETVQYKNISFTVWDVGGQDRIRSL 77
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 144 PTCKVSQERAKSLGINFTPWEVGVRDTVESL 174
PT + E + I+FT W+VG +D + SL
Sbjct: 47 PTIGFNVETVQYKNISFTVWDVGGQDRIRSL 77
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 144 PTCKVSQERAKSLGINFTPWEVGVRDTVESL 174
PT + E + I+FT W+VG +D + SL
Sbjct: 47 PTIGFNVECVQYCNISFTVWDVGGQDRIRSL 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,669,636
Number of Sequences: 62578
Number of extensions: 225398
Number of successful extensions: 571
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 32
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)