BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045922
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 19/212 (8%)
Query: 154 DTLKDIEAF---MSANPAEIVTLILEDYVQAPNGLTKVFNDAGLMKYWYP-VSKMPKNGE 209
D +K I+ + M + ++ ++ + NGL++ FN +K V +P E
Sbjct: 17 DQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSE 76
Query: 210 DWPLVS-DMVANNQRLLVFTSNKSKETSEGIAYQWSYMVEN-QYGNGGM---HAGSC-PN 263
++ D+ ++ R+L N K + + + EN +G+G H C +
Sbjct: 77 KGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGD 136
Query: 264 RAESPPLNDKSKSLVLVNYFESFPIKQTTCVHNSGDLINMLD--TCHGAAGSRWANFVAV 321
E + DK + V + SFP +Q+ + LI G G+ +
Sbjct: 137 FMEKRKIKDKK---LPVGFTFSFPCQQSKI--DEAILITWTKRFKASGVEGADVVKLLNK 191
Query: 322 DYYKRSEGGGSFQAV--DTLNGKLLCGCDDLH 351
KR + + AV DT+ + CG DD H
Sbjct: 192 AIKKRGDYDANIVAVVNDTVGTMMTCGYDDQH 223
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 19/212 (8%)
Query: 154 DTLKDIEAF---MSANPAEIVTLILEDYVQAPNGLTKVFNDAGLMKYWYP-VSKMPKNGE 209
D +K I+ + M + ++ ++ + NGL++ FN +K V +P E
Sbjct: 17 DQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSE 76
Query: 210 DWPLVS-DMVANNQRLLVFTSNKSKETSEGIAYQWSYMVEN-QYGNGGM---HAGSC-PN 263
++ D+ ++ R+L N K + + + EN +G+G H C +
Sbjct: 77 KGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGD 136
Query: 264 RAESPPLNDKSKSLVLVNYFESFPIKQTTCVHNSGDLINMLD--TCHGAAGSRWANFVAV 321
E + DK + V + SFP +Q+ + LI G G+ +
Sbjct: 137 FMEKRKIKDKK---LPVGFTFSFPCQQSKI--DEAILITWTKRFKASGVEGADVVKLLNK 191
Query: 322 DYYKRSEGGGSFQAV--DTLNGKLLCGCDDLH 351
KR + + AV DT+ + CG DD H
Sbjct: 192 AIKKRGDYDANIVAVVNDTVGTMMTCGYDDQH 223
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 19/212 (8%)
Query: 154 DTLKDIEAF---MSANPAEIVTLILEDYVQAPNGLTKVFNDAGLMKYWYP-VSKMPKNGE 209
D +K I+ + M + ++ ++ + NGL++ FN +K V +P E
Sbjct: 17 DQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSE 76
Query: 210 DWPLVS-DMVANNQRLLVFTSNKSKETSEGIAYQWSYMVEN-QYGNGGM---HAGSCP-N 263
++ D+ ++ R+L N K + + + EN +G+G H C +
Sbjct: 77 KGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGD 136
Query: 264 RAESPPLNDKSKSLVLVNYFESFPIKQTTCVHNSGDLINMLD--TCHGAAGSRWANFVAV 321
E + DK + V + SFP +Q+ + LI G G+ +
Sbjct: 137 FMEKRKIKDKK---LPVGFTFSFPCQQSKI--DEAILITWTKRFKASGVEGADVVKLLNK 191
Query: 322 DYYKRSEGGGSFQAV--DTLNGKLLCGCDDLH 351
KR + + AV DT+ + CG DD H
Sbjct: 192 AIKKRGDYDANIVAVVNDTVGTMMTCGYDDQH 223
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 19/212 (8%)
Query: 154 DTLKDIEAF---MSANPAEIVTLILEDYVQAPNGLTKVFNDAGLMKYWYP-VSKMPKNGE 209
D +K I+ + M + ++ ++ + NGL++ FN +K V +P E
Sbjct: 17 DQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSE 76
Query: 210 DWPLVS-DMVANNQRLLVFTSNKSKETSEGIAYQWSYMVEN-QYGNGGM---HAGSCP-N 263
++ D+ ++ R+L N K + + + EN +G+G H C +
Sbjct: 77 KGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGD 136
Query: 264 RAESPPLNDKSKSLVLVNYFESFPIKQTTCVHNSGDLINMLD--TCHGAAGSRWANFVAV 321
E + DK + V + SFP +Q+ + LI G G+ +
Sbjct: 137 FMEKRKIKDKK---LPVGFTFSFPCQQSKI--DEAILITWTKRFKASGVEGADVVKLLNK 191
Query: 322 DYYKRSEGGGSFQAV--DTLNGKLLCGCDDLH 351
KR + + AV DT+ + CG DD H
Sbjct: 192 AIKKRGDYDANIVAVVNDTVGTMMTCGYDDQH 223
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 33 PCSSDGDCEAGL--YCFSCPQGFSGSRCARST 62
PC + G C+ G+ Y +C +GF G C ST
Sbjct: 10 PCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,822,199
Number of Sequences: 62578
Number of extensions: 457628
Number of successful extensions: 830
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 25
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)