BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045922
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93XX5|Y5713_ARATH PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis
thaliana GN=At5g67130 PE=1 SV=1
Length = 426
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 187/333 (56%), Positives = 239/333 (71%), Gaps = 2/333 (0%)
Query: 22 ACSNGQCRLLEPCSSDGDCEAGLYCFSCPQ-GFSGSRCARSTVTNQFKLLNNSLPLNKYA 80
ACSNG C+LL+ CSS DC +GLYC CP G S C R T+ ++N LP NKY
Sbjct: 28 ACSNGNCQLLDSCSSATDCVSGLYCGDCPAVGRSKPVCTRGQATSPTSIIN-GLPFNKYT 86
Query: 81 FLATHNAFANENEPSHTGVPRVAATNQEDTVAQQLSNGVRGFMLDTYDFKGDVWLCHSFG 140
+L THNAF+N N P GV R+ NQEDT+ QL NGVRG MLD YDF D+WLCHS
Sbjct: 87 WLMTHNAFSNANAPLLPGVERITFYNQEDTITNQLQNGVRGLMLDMYDFNNDIWLCHSLR 146
Query: 141 GKCYDVTAFEPAIDTLKDIEAFMSANPAEIVTLILEDYVQAPNGLTKVFNDAGLMKYWYP 200
G+C++ TAF+PAI+ L+++EAF+S NP EIVT+I+EDYV P GL+ +F +AGL KYW+P
Sbjct: 147 GQCFNFTAFQPAINILREVEAFLSQNPTEIVTIIIEDYVHRPKGLSTLFANAGLDKYWFP 206
Query: 201 VSKMPKNGEDWPLVSDMVANNQRLLVFTSNKSKETSEGIAYQWSYMVENQYGNGGMHAGS 260
VSKMP+ GEDWP V+DMV N RLLVFTS +KE EG+AYQW YMVEN+ G+ G+ GS
Sbjct: 207 VSKMPRKGEDWPTVTDMVQENHRLLVFTSVAAKEDEEGVAYQWRYMVENESGDPGVKRGS 266
Query: 261 CPNRAESPPLNDKSKSLVLVNYFESFPIKQTTCVHNSGDLINMLDTCHGAAGSRWANFVA 320
CPNR ES PLN KS SL L+NYF ++P+++ C +S L M+ TC + G+R NF+A
Sbjct: 267 CPNRKESQPLNSKSSSLFLMNYFPTYPVEKDACKEHSAPLAEMVGTCLKSGGNRMPNFLA 326
Query: 321 VDYYKRSEGGGSFQAVDTLNGKLLCGCDDLHAC 353
V++Y RS+GGG F+ +D +NG +LCGC+ L AC
Sbjct: 327 VNFYMRSDGGGVFEILDRMNGPVLCGCETLSAC 359
>sp|Q10683|Y2075_MYCTU Uncharacterized protein Rv2075c/MT2135 OS=Mycobacterium
tuberculosis GN=Rv2075c PE=4 SV=1
Length = 487
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 15/129 (11%)
Query: 64 TNQFK-LLNNSLPLNKYAFLATHNAFANENEPSHTGVPRVAATNQEDTVAQQLSNGVRGF 122
T +F+ L + +PL + +L THN+F N S + A +NQ+ ++AQQL VR
Sbjct: 101 TARFQDALQDPVPLRETQWLGTHNSF---NSLSDSFTVSHADSNQQLSLAQQLDIDVRAL 157
Query: 123 MLDTY---DFKGD----VWLCHSFGGKCYDV-TAFEPAIDT-LKDIEAFMSA--NPAEIV 171
LD + +G V +CH G K ++ EP + T L I +++A + E++
Sbjct: 158 ELDLHYLPRLEGHGAPGVTVCHGLGPKNANLGCTVEPLLATVLPQIANWLNAPGHTEEVI 217
Query: 172 TLILEDYVQ 180
L LED ++
Sbjct: 218 LLYLEDQLK 226
>sp|B2IGT0|RS2_BEII9 30S ribosomal protein S2 OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpsB PE=3
SV=2
Length = 336
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 135 LCHSFGGKCYDVTAFEPAIDTLKDIEAFMSANPAEIVTLI------LEDYVQAPNG---L 185
+ S G +D E ++ L +E A P EI L+ +D + P +
Sbjct: 226 ISRSQGMGGFDAGELEAPVEDLPPVEGEYEAAPTEIFELLDAPRGAPDDLAKLPGSGPQI 285
Query: 186 TKVFNDAGLMKYWYPVSKMPKN 207
K NDAG+ YW + P++
Sbjct: 286 VKKLNDAGIFHYWQVAAMTPED 307
>sp|P55181|YXJO_BACSU Uncharacterized HTH-type transcriptional regulator YxjO OS=Bacillus
subtilis (strain 168) GN=yxjO PE=4 SV=1
Length = 291
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 40 CEAGLYCFSCPQGFSGSRCARSTVTNQFKLLNNSLPLNKYAFLATHNAFANENEPSHTGV 99
CE G C + P F SR ++V +++LL + P AFL +N SH
Sbjct: 161 CE-GTLCLAAP--FQESRPDAASVLTRYRLLTHDHPSYGDAFL--------DNIRSHYPY 209
Query: 100 PRVAATNQEDTVAQQLSNGVRGFMLDTYDFKGD 132
++ A Q DT + G+ L TY K +
Sbjct: 210 LQMMAVGQTDTAVHMMKAGMGASFLPTYIIKQE 242
>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2
Length = 4981
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 30 LLEPCSSDGDCE--AGLYCFSCPQGFSGSRCAR 60
L PC S G C G + SCP GF+G C R
Sbjct: 3867 LPSPCHSGGTCHNLVGGFSCSCPDGFTGRACER 3899
>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein
OS=Homo sapiens GN=HSPG2 PE=1 SV=4
Length = 4391
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 32 EPCSSDGDC---EAGLYCFSCPQGFSGSRCARS 61
PC + G C E+ Y CP GF+GSRC S
Sbjct: 3851 RPCQNGGQCHDSESSSYVCVCPAGFTGSRCEHS 3883
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 28 CRLLEPCSSDGDCEAGLYCFSCPQGFSGSRCARST 62
C+L EPC G C+ G C P GFSG RC + +
Sbjct: 4147 CQLREPCLHGGTCQ-GTRCLCLP-GFSGPRCQQGS 4179
>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2
SV=2
Length = 1639
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 33 PCSSDGDC----EAGLYCFSCPQGFSGSRCAR 60
PC +DG C E + C CP+G+ GSRC +
Sbjct: 794 PCPNDGACLQINEDTVICTECPKGYFGSRCEQ 825
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,570,437
Number of Sequences: 539616
Number of extensions: 5703340
Number of successful extensions: 12014
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 11848
Number of HSP's gapped (non-prelim): 222
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)