BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045926
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YQ3|B Chain B, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|B Chain B, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|B Chain B, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|O Chain O, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|B Chain B, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|O Chain O, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|B Chain B, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|B Chain B, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|O Chain O, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 252
Score = 326 bits (836), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 183/230 (79%), Gaps = 2/230 (0%)
Query: 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
+K+F IYRW+PD+P KP +Q+Y VDL++CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct: 11 IKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGIC 70
Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
GSCAMNI G NT+AC K ID D SK T I PLPHM+V+KDLV DL+NFY QYKSIEP+LK
Sbjct: 71 GSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLK 130
Query: 179 TNMVPKDGRE-YRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
K G+E Y QS DR+KLDGLYECILCACC+TSCPSYWWN ++YLGPA L+ AYRW
Sbjct: 131 KKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 190
Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
+ DSRD+ TEERL L +D LYRC I NCT TCPKGL+P AI ++K
Sbjct: 191 MIDSRDDYTEERLAQL-QDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIK 239
>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 252
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 147/230 (63%), Positives = 181/230 (78%), Gaps = 2/230 (0%)
Query: 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
+K+F IYRW+PD+ KP +Q+Y +DL+ CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct: 11 IKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGIC 70
Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
GSCAMNI G NT+AC + ID + K + I PLPHM+VIKDLV DL+NFY QYKSIEP+LK
Sbjct: 71 GSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLK 130
Query: 179 TNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
++G+ +Y QS +R+KLDGLYECILCACC+TSCPSYWWN ++YLGPA L+ AYRW
Sbjct: 131 KKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 190
Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
+ DSRD+ TEERL L +D LYRC I NCT TCPKGL+P AI ++K
Sbjct: 191 MIDSRDDFTEERLAKL-QDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIK 239
>pdb|1ZOY|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3SFD|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 252
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 147/230 (63%), Positives = 181/230 (78%), Gaps = 2/230 (0%)
Query: 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
+K+F IYRW+PD+ KP +Q+Y +DL+ CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct: 11 IKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGIC 70
Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
GSCAMNI G NT+AC + ID + K + I PLPHM+VIKDLV DL+NFY QYKSIEP+LK
Sbjct: 71 GSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLK 130
Query: 179 TNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
++G+ +Y QS +R+KLDGLYECILCACC+TSCPSYWWN ++YLGPA L+ AYRW
Sbjct: 131 KKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 190
Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
+ DSRD+ TEERL L +D LYRC I NCT TCPKGL+P AI ++K
Sbjct: 191 MIDSRDDFTEERLAKL-QDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIK 239
>pdb|3VR8|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|F Chain F, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|F Chain F, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 282
Score = 290 bits (742), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 142/233 (60%), Positives = 174/233 (74%), Gaps = 4/233 (1%)
Query: 57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREG 116
K +K F IYR+NP+ P +KP LQ + VDL +CG MVLDAL KIK E D +L++RRSCREG
Sbjct: 33 KRIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREG 92
Query: 117 ICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPW 176
ICGSCAMNI G NT+AC+ ID +TSK T I PLPHMFVIKDLV D+ FY QY SI+PW
Sbjct: 93 ICGSCAMNIAGENTLACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPW 152
Query: 177 L--KTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHA 234
L KT + + ++Y QS +++KLDGLYECILCACC+ SCPSYWWN ++YLGPA L+ A
Sbjct: 153 LQKKTKINLGEKQQY-QSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQA 211
Query: 235 YRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
YRWI DSRD+ ERL A +D ++C I NCT TCPK L+PA AI ++K
Sbjct: 212 YRWIIDSRDDSAAERL-ARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIK 263
>pdb|1NEK|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WS3|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU2|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU5|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 238
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 159/231 (68%), Gaps = 6/231 (2%)
Query: 61 EFRIYRWNPDRPDSKPFLQSYHVDLSEC-GPMVLDALQKIKAETDSSLSYRRSCREGICG 119
EF IYR+NPD D P +Q Y ++ E M+LDAL ++K E D SLS+RRSCREG+CG
Sbjct: 4 EFSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCG 61
Query: 120 SCAMNIGGTNTVACLKPIDG--DTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWL 177
S +N+ G N +AC+ PI K +I PLP + VI+DLVVD+ FY QY+ I+P+L
Sbjct: 62 SDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121
Query: 178 KTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
N RE+ Q P R+KLDGLYECILCACC+TSCPS+WWNP++++GPA LL AYR+
Sbjct: 122 LNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181
Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKT 288
+ DSRD T+ RL L+ D ++RC +I NC + CPKGL+P AI +K+
Sbjct: 182 LIDSRDTETDSRLDGLS-DAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKS 231
>pdb|2WP9|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
Length = 238
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 159/231 (68%), Gaps = 6/231 (2%)
Query: 61 EFRIYRWNPDRPDSKPFLQSYHVDLSEC-GPMVLDALQKIKAETDSSLSYRRSCREGICG 119
EF IYR+NPD D P +Q Y ++ E M+LDAL ++K E D SLS+RRSCREG+CG
Sbjct: 4 EFSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCG 61
Query: 120 SCAMNIGGTNTVACLKPIDG--DTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWL 177
S +N+ G N +AC+ PI K +I PLP + VI+DLVVD+ FY QY+ I+P+L
Sbjct: 62 SDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121
Query: 178 KTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
N RE+ Q P R+KLDGLYECILCACC+TSCPS+WWNP++++GPA LL AYR+
Sbjct: 122 LNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181
Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKT 288
+ DSRD T+ RL L+ D ++RC +I NC + CPKGL+P AI +K+
Sbjct: 182 LIDSRDTETDSRLDGLS-DAFSVFRCTSIMNCVSVCPKGLNPTRAIGHIKS 231
>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|B Chain B, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|N Chain N, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|2B76|B Chain B, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|N Chain N, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|3CIR|B Chain B, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|N Chain N, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3P4R|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|B Chain B, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|N Chain N, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 243
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 121/233 (51%), Gaps = 7/233 (3%)
Query: 59 MKEFRI--YRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREG 116
MK +I R+NP+ D+ P Y V + +LDAL IK LSYR SCR
Sbjct: 3 MKNLKIEVVRYNPEV-DTAPHSAFYEVPY-DATTSLLDALGYIKDNLAPDLSYRWSCRMA 60
Query: 117 ICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPW 176
ICGSC M + +AC K D + + L + + +DLVVD+T+F + ++I+P+
Sbjct: 61 ICGSCGMMVNNVPKLAC-KTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPY 119
Query: 177 LKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYR 236
+ N D Q+PA K CI C C +CP + NP E++GPAA+ A+R
Sbjct: 120 IIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP-EFIGPAAITLAHR 178
Query: 237 WICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK 289
+ DSRD +ER+ L + ++ C + C+ CPK +DPA AI + K +
Sbjct: 179 YNEDSRDHGKKERMAQLNS-QNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVE 230
>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 241
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 5/240 (2%)
Query: 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
M R+++++P SKP Q Y ++ + + + L I+ D L++ CR GIC
Sbjct: 4 MLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFI-VLNMIRETYDPDLNFDFVCRAGIC 62
Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQ-QYKSIEPWL 177
GSC M I G ++AC + PLP +IKDL VD N++ + +E W+
Sbjct: 63 GSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWI 122
Query: 178 KTNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYR 236
+ E R P +++ L CI C CC +C + E+++G A L R
Sbjct: 123 HAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVR 181
Query: 237 WICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPM 296
++ D DE T+E L D+ ++ C + C CPK L I ++ K M+S M
Sbjct: 182 FMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRK-MVSVNM 240
>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|B Chain B, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|E Chain E, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|B Chain B, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|E Chain E, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
Length = 239
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 4/233 (1%)
Query: 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
M R+++++P SKP Q Y ++ + + + L I+ D L++ CR GIC
Sbjct: 4 MLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFI-VLNMIRETYDPDLNFDFVCRAGIC 62
Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQ-QYKSIEPWL 177
GSC M I G ++AC + PLP +IKDL VD N++ + +E W+
Sbjct: 63 GSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWI 122
Query: 178 KTNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYR 236
+ E R P +++ L CI C CC +C + E+++G A L R
Sbjct: 123 HAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVR 181
Query: 237 WICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK 289
++ D DE T+E L D+ ++ C + C CPK L I ++ K
Sbjct: 182 FMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRK 234
>pdb|2P0N|A Chain A, Nmb1532 Protein From Neisseria Meningitidis, Unknown
Function
pdb|2P0N|B Chain B, Nmb1532 Protein From Neisseria Meningitidis, Unknown
Function
Length = 172
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 11 YNKVAGIFGRAEAKKQDFPVL-EGHPAAQESAEVALESRVTVQDNVKKVMKEFRIYR--- 66
Y VA + ++ FP+L + P AQES + L + + DN V EF
Sbjct: 61 YFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDELLRQHIGLHDNWAAVSAEFAKLEADN 120
Query: 67 -WNPDRPDSKPFLQSYHVDLSECGPM 91
+ PD K F+ Y V L+ P+
Sbjct: 121 AYVPDEEAFKRFVAGYDVHLAIEEPL 146
>pdb|1T3Q|A Chain A, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|D Chain D, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 168
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 94 DALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACL 134
DAL+++ T + + C +G+CGSC + I G +CL
Sbjct: 33 DALREVVGLTGTKIG----CEQGVCGSCTILIDGAPMRSCL 69
>pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|8 Chain 8, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|9 Chain 9, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|O Chain O, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 182
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 200 DGLYECILCACCTTSCPSY--WWNPEE 224
+GL +CI C+ C +CP+Y + P E
Sbjct: 48 NGLEKCIGCSLCAAACPAYAIYVEPAE 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,015,260
Number of Sequences: 62578
Number of extensions: 362383
Number of successful extensions: 987
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 19
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)