Query 045926
Match_columns 302
No_of_seqs 301 out of 2202
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0479 FrdB Succinate dehydro 100.0 1.4E-64 3.1E-69 454.0 16.5 231 59-295 2-232 (234)
2 PLN00129 succinate dehydrogena 100.0 8.3E-64 1.8E-68 460.9 20.0 268 6-290 5-273 (276)
3 KOG3049 Succinate dehydrogenas 100.0 2.2E-64 4.8E-69 439.0 12.4 238 55-293 42-281 (288)
4 PRK13552 frdB fumarate reducta 100.0 2.1E-61 4.7E-66 439.1 18.9 233 58-293 3-238 (239)
5 PRK12575 succinate dehydrogena 100.0 1.7E-60 3.7E-65 431.7 18.4 231 58-293 3-233 (235)
6 PRK08640 sdhB succinate dehydr 100.0 1.2E-59 2.5E-64 429.9 18.1 232 58-295 4-243 (249)
7 PRK12386 fumarate reductase ir 100.0 8.2E-57 1.8E-61 410.6 18.6 228 59-296 4-236 (251)
8 PRK12385 fumarate reductase ir 100.0 4.8E-57 1E-61 411.8 16.3 233 57-294 4-236 (244)
9 PRK12577 succinate dehydrogena 100.0 3.3E-56 7.1E-61 422.6 19.8 232 59-295 2-243 (329)
10 PRK05950 sdhB succinate dehydr 100.0 9.5E-56 2.1E-60 400.9 17.5 230 61-294 1-231 (232)
11 PRK12576 succinate dehydrogena 100.0 2.7E-54 5.9E-59 400.6 19.3 231 57-295 6-240 (279)
12 TIGR00384 dhsB succinate dehyd 100.0 2E-53 4.4E-58 382.8 15.1 220 64-287 1-220 (220)
13 PRK07570 succinate dehydrogena 100.0 9E-52 2E-56 377.6 15.6 225 59-294 2-244 (250)
14 PRK06259 succinate dehydrogena 100.0 2.8E-42 6.1E-47 342.8 19.3 218 58-295 2-220 (486)
15 PF13085 Fer2_3: 2Fe-2S iron-s 100.0 5.9E-37 1.3E-41 246.6 9.1 107 61-168 1-110 (110)
16 COG3383 Uncharacterized anaero 99.9 3.1E-24 6.8E-29 215.0 -0.3 192 56-281 2-212 (978)
17 PRK08493 NADH dehydrogenase su 99.9 1.5E-22 3.3E-27 210.7 4.2 197 59-281 1-224 (819)
18 PTZ00305 NADH:ubiquinone oxido 99.8 4.2E-22 9E-27 183.5 1.0 147 55-219 64-228 (297)
19 COG1034 NuoG NADH dehydrogenas 99.8 1.2E-20 2.6E-25 192.5 2.8 189 59-283 1-206 (693)
20 PRK09130 NADH dehydrogenase su 99.8 1.8E-20 3.9E-25 193.5 0.9 186 59-280 1-204 (687)
21 PRK07569 bidirectional hydroge 99.8 2.8E-20 6.1E-25 169.0 -0.3 188 58-278 2-207 (234)
22 PRK07860 NADH dehydrogenase su 99.8 7.2E-20 1.6E-24 192.0 1.3 188 58-281 3-210 (797)
23 PRK09129 NADH dehydrogenase su 99.8 1.1E-19 2.5E-24 190.2 0.9 187 59-281 1-204 (776)
24 TIGR01973 NuoG NADH-quinone ox 99.7 1.3E-19 2.7E-24 185.0 -0.4 179 81-281 6-202 (603)
25 PRK08166 NADH dehydrogenase su 99.7 2.4E-17 5.1E-22 174.3 3.9 185 59-281 1-209 (847)
26 PRK11274 glcF glycolate oxidas 99.4 5E-13 1.1E-17 130.2 7.0 98 189-294 9-106 (407)
27 COG1150 HdrC Heterodisulfide r 99.3 1.1E-12 2.4E-17 114.4 5.8 83 201-297 37-119 (195)
28 PF13510 Fer2_4: 2Fe-2S iron-s 99.3 4.4E-12 9.5E-17 97.3 5.9 66 58-139 2-73 (82)
29 TIGR03290 CoB_CoM_SS_C CoB--Co 99.3 6.1E-12 1.3E-16 106.2 6.6 79 203-295 2-80 (144)
30 COG1139 Uncharacterized conser 99.3 2.9E-12 6.3E-17 123.3 4.2 84 198-294 303-391 (459)
31 TIGR03193 4hydroxCoAred 4-hydr 99.2 2.2E-11 4.8E-16 102.9 8.0 75 60-152 2-78 (148)
32 PRK09908 xanthine dehydrogenas 99.2 3.6E-11 7.7E-16 102.7 7.5 77 58-152 7-84 (159)
33 TIGR00273 iron-sulfur cluster- 99.2 2.8E-11 6.1E-16 119.1 5.8 84 199-295 289-377 (432)
34 COG2080 CoxS Aerobic-type carb 99.2 6.2E-11 1.3E-15 100.4 6.7 77 58-152 2-80 (156)
35 PRK11168 glpC sn-glycerol-3-ph 99.1 6.2E-11 1.3E-15 115.0 6.3 82 201-294 5-87 (396)
36 PRK11433 aldehyde oxidoreducta 99.1 2.8E-10 6.2E-15 101.7 9.1 78 58-152 50-128 (217)
37 TIGR03198 pucE xanthine dehydr 99.0 4E-10 8.6E-15 95.8 7.0 75 59-151 3-79 (151)
38 PRK12814 putative NADPH-depend 99.0 1.3E-09 2.9E-14 112.6 11.8 66 58-139 2-70 (652)
39 TIGR03379 glycerol3P_GlpC glyc 98.9 8.4E-10 1.8E-14 107.4 5.7 81 201-294 3-85 (397)
40 COG0247 GlpC Fe-S oxidoreducta 98.9 1.3E-09 2.9E-14 105.0 4.9 86 200-294 6-91 (388)
41 PF13183 Fer4_8: 4Fe-4S diclus 98.9 3.9E-10 8.3E-15 79.8 0.2 57 201-277 1-57 (57)
42 PF13534 Fer4_17: 4Fe-4S diclu 98.8 1.2E-09 2.6E-14 78.5 0.5 61 204-278 1-61 (61)
43 PRK15055 anaerobic sulfite red 98.8 4.2E-09 9.1E-14 100.7 3.6 39 259-297 305-343 (344)
44 PRK09800 putative hypoxanthine 98.6 3.7E-08 8E-13 105.5 6.8 75 60-152 3-79 (956)
45 TIGR01945 rnfC electron transp 98.6 5E-08 1.1E-12 96.5 5.7 75 200-293 360-434 (435)
46 TIGR02963 xanthine_xdhA xanthi 98.5 1.4E-07 3.1E-12 94.0 7.0 94 60-171 1-110 (467)
47 TIGR03313 Se_sel_red_Mo probab 98.5 1.3E-07 2.8E-12 101.5 5.7 68 79-152 6-75 (951)
48 TIGR03311 Se_dep_Molyb_1 selen 98.5 2.2E-07 4.8E-12 98.7 7.0 65 82-152 9-75 (848)
49 TIGR02910 sulfite_red_A sulfit 98.4 1.7E-07 3.7E-12 89.3 4.5 34 259-292 299-332 (334)
50 PRK00941 acetyl-CoA decarbonyl 98.4 1.8E-07 3.9E-12 97.1 4.7 80 196-295 397-476 (781)
51 cd00207 fer2 2Fe-2S iron-sulfu 98.4 3.5E-07 7.6E-12 69.2 5.0 52 81-139 10-79 (84)
52 PRK05035 electron transport co 98.4 1.8E-07 3.9E-12 97.1 4.1 75 201-294 368-442 (695)
53 PRK05352 Na(+)-translocating N 98.4 4.8E-07 1E-11 89.6 6.2 73 202-293 373-447 (448)
54 cd01916 ACS_1 Acetyl-CoA synth 98.4 2.8E-07 6.2E-12 95.5 4.7 81 195-295 357-437 (731)
55 KOG2282 NADH-ubiquinone oxidor 98.4 1.4E-07 3.1E-12 92.6 2.1 57 81-139 40-99 (708)
56 COG1143 NuoI Formate hydrogenl 98.4 3.6E-08 7.8E-13 85.6 -2.3 61 200-278 52-112 (172)
57 TIGR00314 cdhA CO dehydrogenas 98.3 4.2E-07 9E-12 94.4 4.9 77 196-292 392-468 (784)
58 TIGR01936 nqrA NADH:ubiquinone 98.3 7.4E-07 1.6E-11 88.2 5.9 73 202-293 372-446 (447)
59 CHL00134 petF ferredoxin; Vali 98.2 4.9E-06 1.1E-10 65.9 6.8 38 81-125 17-54 (99)
60 PLN00192 aldehyde oxidase 98.2 2.6E-06 5.6E-11 94.5 6.7 95 59-171 5-116 (1344)
61 PF00111 Fer2: 2Fe-2S iron-sul 98.2 3.3E-06 7.2E-11 63.2 5.2 41 79-126 6-48 (78)
62 COG4656 RnfC Predicted NADH:ub 98.2 1.7E-06 3.6E-11 85.8 4.5 73 204-295 366-438 (529)
63 PRK10713 2Fe-2S ferredoxin Yfa 98.2 4.9E-06 1.1E-10 63.9 6.1 42 81-128 11-53 (84)
64 TIGR02969 mam_aldehyde_ox alde 98.1 2.9E-06 6.3E-11 94.0 5.9 94 60-171 3-113 (1330)
65 PF13237 Fer4_10: 4Fe-4S diclu 98.1 5.5E-07 1.2E-11 62.5 -0.1 50 199-274 3-52 (52)
66 TIGR02484 CitB CitB domain pro 98.1 3E-06 6.6E-11 81.4 4.8 72 198-293 9-86 (372)
67 TIGR02007 fdx_isc ferredoxin, 98.1 8.1E-06 1.8E-10 65.9 6.5 51 59-125 3-54 (110)
68 PF13187 Fer4_9: 4Fe-4S diclus 98.1 7.6E-08 1.7E-12 67.5 -5.1 54 204-277 1-54 (55)
69 PF13746 Fer4_18: 4Fe-4S diclu 98.1 3.9E-07 8.4E-12 67.6 -1.6 21 259-279 48-68 (69)
70 TIGR02008 fdx_plant ferredoxin 98.1 1.3E-05 2.8E-10 63.2 6.8 38 81-125 15-52 (97)
71 PF12838 Fer4_7: 4Fe-4S diclus 98.0 3.8E-07 8.3E-12 63.4 -2.2 52 204-277 1-52 (52)
72 PF14697 Fer4_21: 4Fe-4S diclu 98.0 6.7E-07 1.4E-11 64.3 -1.3 52 201-277 4-56 (59)
73 TIGR00403 ndhI NADH-plastoquin 98.0 2E-06 4.4E-11 75.5 1.0 63 198-278 57-119 (183)
74 KOG3256 NADH:ubiquinone oxidor 97.9 1.3E-06 2.9E-11 74.5 -1.5 101 155-278 66-167 (212)
75 PRK15033 tricarballylate utili 97.8 1.8E-05 3.9E-10 76.5 4.7 75 195-293 25-105 (389)
76 COG1152 CdhA CO dehydrogenase/ 97.7 2.3E-05 5.1E-10 78.4 3.6 77 195-291 392-468 (772)
77 PRK13984 putative oxidoreducta 97.7 2.4E-05 5.3E-10 80.2 3.5 35 259-293 183-217 (604)
78 PLN03136 Ferredoxin; Provision 97.6 8.4E-05 1.8E-09 63.2 5.2 38 81-125 66-103 (148)
79 PLN02593 adrenodoxin-like ferr 97.6 0.00018 3.9E-09 58.8 6.9 40 79-125 11-51 (117)
80 PTZ00038 ferredoxin; Provision 97.6 9.8E-05 2.1E-09 65.2 5.5 38 81-125 107-144 (191)
81 COG1453 Predicted oxidoreducta 97.6 0.00011 2.3E-09 70.5 6.0 82 204-295 294-385 (391)
82 PRK05888 NADH dehydrogenase su 97.6 1.7E-05 3.8E-10 68.3 0.3 60 200-278 55-114 (164)
83 PTZ00490 Ferredoxin superfamil 97.5 0.00032 7E-09 59.3 7.2 55 57-126 33-88 (143)
84 COG0633 Fdx Ferredoxin [Energy 97.5 0.00023 4.9E-09 56.7 6.0 39 81-126 15-53 (102)
85 CHL00014 ndhI NADH dehydrogena 97.5 3E-05 6.5E-10 67.1 0.5 61 200-278 56-116 (167)
86 PLN02906 xanthine dehydrogenas 97.4 0.00011 2.4E-09 81.8 4.2 77 90-171 2-93 (1319)
87 PRK05113 electron transport co 97.4 3.8E-05 8.3E-10 67.9 0.4 53 198-278 109-161 (191)
88 TIGR01971 NuoI NADH-quinone ox 97.4 2E-05 4.4E-10 64.2 -1.4 58 202-278 42-99 (122)
89 PRK14028 pyruvate ferredoxin o 97.4 3.1E-05 6.7E-10 73.3 -0.5 63 199-277 243-305 (312)
90 PRK02651 photosystem I subunit 97.4 2.9E-05 6.2E-10 58.8 -0.7 56 202-278 8-63 (81)
91 CHL00065 psaC photosystem I su 97.4 2.3E-05 4.9E-10 59.6 -1.4 57 201-278 7-63 (81)
92 PRK08348 NADH-plastoquinone ox 97.4 3.5E-05 7.6E-10 62.9 -0.5 54 198-278 37-90 (120)
93 PRK08222 hydrogenase 4 subunit 97.4 3.4E-05 7.4E-10 67.7 -0.6 56 200-278 35-90 (181)
94 PRK05713 hypothetical protein; 97.3 0.00028 6.1E-09 66.6 5.3 52 81-139 9-78 (312)
95 TIGR02936 fdxN_nitrog ferredox 97.3 1.8E-05 3.9E-10 61.1 -2.4 21 198-218 16-36 (91)
96 PRK10684 HCP oxidoreductase, N 97.3 0.00043 9.4E-09 65.9 6.3 38 83-127 260-298 (332)
97 PRK11872 antC anthranilate dio 97.3 0.00059 1.3E-08 65.3 7.0 52 81-139 15-86 (340)
98 PRK07609 CDP-6-deoxy-delta-3,4 97.3 0.00051 1.1E-08 65.4 6.5 52 81-139 12-83 (339)
99 PRK09626 oorD 2-oxoglutarate-a 97.3 5.5E-05 1.2E-09 60.2 -0.4 62 196-278 9-70 (103)
100 PRK06273 ferredoxin; Provision 97.3 2.9E-05 6.2E-10 67.2 -2.2 62 200-277 46-107 (165)
101 TIGR03048 PS_I_psaC photosyste 97.3 3.4E-05 7.5E-10 58.4 -1.5 58 200-278 5-62 (80)
102 COG1145 NapF Ferredoxin [Energ 97.3 0.00013 2.9E-09 56.3 1.7 54 200-277 26-79 (99)
103 TIGR02160 PA_CoA_Oxy5 phenylac 97.2 0.00072 1.6E-08 64.7 6.8 38 83-127 277-315 (352)
104 TIGR02176 pyruv_ox_red pyruvat 97.2 6.3E-05 1.4E-09 82.6 -0.9 73 200-276 680-754 (1165)
105 PRK09625 porD pyruvate flavodo 97.2 6.1E-05 1.3E-09 62.9 -0.8 51 199-277 55-105 (133)
106 TIGR02512 Fe_only_hydrog hydro 97.2 9E-05 1.9E-09 72.0 0.2 77 200-292 4-82 (374)
107 TIGR01941 nqrF NADH:ubiquinone 97.2 0.00072 1.6E-08 66.3 6.4 67 55-139 27-114 (405)
108 PLN00071 photosystem I subunit 97.2 5.4E-05 1.2E-09 57.4 -1.4 57 201-278 7-63 (81)
109 PRK12387 formate hydrogenlyase 97.1 8.4E-05 1.8E-09 65.0 -0.7 57 199-278 34-90 (180)
110 PRK08318 dihydropyrimidine deh 97.1 0.00013 2.8E-09 71.9 0.5 55 200-277 339-394 (420)
111 TIGR02494 PFLE_PFLC glycyl-rad 97.1 9.7E-05 2.1E-09 69.0 -0.4 57 197-277 42-98 (295)
112 PRK06991 ferredoxin; Provision 97.1 0.00013 2.9E-09 67.8 -0.1 50 199-276 81-130 (270)
113 TIGR02163 napH_ ferredoxin-typ 97.1 0.00015 3.3E-09 66.9 0.2 52 201-277 199-250 (255)
114 PRK05464 Na(+)-translocating N 97.0 0.0011 2.4E-08 65.1 6.2 66 56-139 32-118 (409)
115 PF13484 Fer4_16: 4Fe-4S doubl 97.0 0.00012 2.6E-09 53.2 -0.4 17 204-220 1-17 (67)
116 PRK09624 porD pyuvate ferredox 97.0 0.00012 2.6E-09 58.6 -0.7 50 200-277 48-97 (105)
117 PRK08764 ferredoxin; Provision 97.0 0.00022 4.8E-09 59.6 0.4 48 202-277 84-131 (135)
118 PRK09477 napH quinol dehydroge 97.0 0.00021 4.5E-09 66.5 0.2 55 200-278 205-259 (271)
119 PRK09623 vorD 2-ketoisovalerat 96.9 0.00023 4.9E-09 57.0 0.1 52 198-277 46-97 (105)
120 PF12798 Fer4_3: 4Fe-4S bindin 96.9 0.00027 5.9E-09 36.9 0.3 15 263-277 1-15 (15)
121 COG0437 HybA Fe-S-cluster-cont 96.9 0.00031 6.6E-09 62.6 0.7 60 198-288 95-163 (203)
122 TIGR01944 rnfB electron transp 96.9 0.00014 3E-09 62.8 -1.5 52 198-277 108-159 (165)
123 COG1146 Ferredoxin [Energy pro 96.9 0.00044 9.5E-09 50.7 1.2 52 201-277 6-57 (68)
124 TIGR02179 PorD_KorD 2-oxoacid: 96.8 0.00021 4.6E-09 53.5 -0.8 51 199-277 21-71 (78)
125 TIGR00402 napF ferredoxin-type 96.8 0.00024 5.2E-09 56.4 -0.8 53 200-278 31-83 (101)
126 PF12797 Fer4_2: 4Fe-4S bindin 96.8 0.00033 7.2E-09 40.2 -0.1 20 198-217 3-22 (22)
127 TIGR02912 sulfite_red_C sulfit 96.7 0.00022 4.7E-09 67.7 -1.6 53 200-278 166-218 (314)
128 COG4630 XdhA Xanthine dehydrog 96.7 0.0029 6.3E-08 60.9 6.0 95 57-170 6-117 (493)
129 PRK10194 ferredoxin-type prote 96.7 0.00032 6.9E-09 60.3 -0.7 18 201-218 32-49 (163)
130 PRK09326 F420H2 dehydrogenase 96.6 0.00056 1.2E-08 65.7 0.0 61 199-276 8-68 (341)
131 PRK10882 hydrogenase 2 protein 96.5 0.0011 2.4E-08 63.3 1.5 66 199-293 139-221 (328)
132 COG1149 MinD superfamily P-loo 96.5 0.00043 9.3E-09 64.1 -1.4 49 201-277 67-115 (284)
133 PRK09898 hypothetical protein; 96.4 0.0014 3.1E-08 58.5 1.7 49 199-278 150-198 (208)
134 TIGR03149 cyt_nit_nrfC cytochr 96.2 0.0026 5.7E-08 57.6 2.4 60 200-290 122-195 (225)
135 KOG0430 Xanthine dehydrogenase 96.1 0.014 2.9E-07 63.2 7.1 76 60-152 3-89 (1257)
136 PF12800 Fer4_4: 4Fe-4S bindin 96.0 0.0037 8.1E-08 33.7 1.4 15 203-217 2-16 (17)
137 PF12837 Fer4_6: 4Fe-4S bindin 96.0 0.0016 3.4E-08 38.3 -0.3 18 260-277 6-23 (24)
138 TIGR03224 benzo_boxA benzoyl-C 96.0 0.002 4.4E-08 63.4 0.3 51 198-277 5-55 (411)
139 TIGR02060 aprB adenosine phosp 95.9 0.0013 2.9E-08 54.8 -1.0 53 200-278 5-62 (132)
140 PF12837 Fer4_6: 4Fe-4S bindin 95.9 0.0013 2.9E-08 38.6 -0.8 18 200-217 4-21 (24)
141 PRK12778 putative bifunctional 95.9 0.011 2.4E-07 62.4 5.4 31 106-136 210-240 (752)
142 PF00037 Fer4: 4Fe-4S binding 95.9 0.0028 6.1E-08 37.1 0.5 18 260-277 5-22 (24)
143 TIGR02700 flavo_MJ0208 archaeo 95.9 0.0022 4.7E-08 58.4 -0.1 50 200-278 145-194 (234)
144 PF12800 Fer4_4: 4Fe-4S bindin 95.8 0.0049 1.1E-07 33.2 1.1 16 261-276 2-17 (17)
145 COG1144 Pyruvate:ferredoxin ox 95.7 0.0028 6E-08 49.1 -0.0 51 199-276 31-81 (91)
146 TIGR00397 mauM_napG MauM/NapG 95.7 0.0018 4E-08 58.2 -1.2 57 202-278 52-110 (213)
147 TIGR02745 ccoG_rdxA_fixG cytoc 95.6 0.0031 6.7E-08 62.5 -0.0 40 202-275 230-269 (434)
148 COG2768 Uncharacterized Fe-S c 95.6 0.0032 7E-08 59.1 -0.1 49 200-278 190-238 (354)
149 TIGR03478 DMSO_red_II_bet DMSO 95.5 0.0032 6.9E-08 59.7 -0.3 49 199-278 158-215 (321)
150 TIGR00276 iron-sulfur cluster 95.5 0.01 2.2E-07 55.7 2.9 67 203-278 159-226 (282)
151 TIGR01660 narH nitrate reducta 95.5 0.0024 5.1E-08 63.2 -1.4 24 62-86 86-109 (492)
152 TIGR03336 IOR_alpha indolepyru 95.4 0.0063 1.4E-07 62.7 1.2 47 199-277 546-594 (595)
153 TIGR03287 methan_mark_16 putat 95.3 0.0058 1.3E-07 59.6 0.8 47 199-277 298-346 (391)
154 PRK10194 ferredoxin-type prote 95.3 0.0035 7.5E-08 53.9 -0.8 19 201-219 64-82 (163)
155 PRK12775 putative trifunctiona 95.3 0.016 3.4E-07 63.3 3.9 31 106-136 210-240 (1006)
156 PRK09476 napG quinol dehydroge 95.2 0.00075 1.6E-08 62.3 -5.5 16 261-276 184-199 (254)
157 TIGR01582 FDH-beta formate deh 95.2 0.009 1.9E-07 56.1 1.6 63 199-292 120-195 (283)
158 TIGR03149 cyt_nit_nrfC cytochr 95.1 0.0045 9.7E-08 56.1 -0.7 52 200-278 89-142 (225)
159 TIGR03478 DMSO_red_II_bet DMSO 95.1 0.0029 6.3E-08 59.9 -2.0 55 197-278 123-179 (321)
160 COG2878 Predicted NADH:ubiquin 95.1 0.0099 2.1E-07 51.9 1.4 52 199-278 111-162 (198)
161 PF00037 Fer4: 4Fe-4S binding 95.1 0.0041 8.8E-08 36.4 -0.7 19 200-218 3-21 (24)
162 PRK14993 tetrathionate reducta 95.1 0.006 1.3E-07 56.0 0.0 49 199-278 126-183 (244)
163 COG1148 HdrA Heterodisulfide r 95.1 0.0085 1.8E-07 59.8 1.0 46 201-278 559-604 (622)
164 PF13247 Fer4_11: 4Fe-4S diclu 95.0 0.0031 6.7E-08 49.9 -1.8 23 197-219 34-56 (98)
165 TIGR01372 soxA sarcosine oxida 94.9 0.058 1.3E-06 58.8 7.0 77 58-154 11-98 (985)
166 PRK13795 hypothetical protein; 94.9 0.004 8.7E-08 64.6 -1.8 53 199-278 577-629 (636)
167 TIGR02951 DMSO_dmsB DMSO reduc 94.9 0.0094 2E-07 51.0 0.7 49 200-279 92-149 (161)
168 PRK10882 hydrogenase 2 protein 94.8 0.0077 1.7E-07 57.7 0.0 51 201-278 108-160 (328)
169 PRK10330 formate dehydrogenase 94.8 0.0028 6E-08 55.3 -2.8 63 200-278 84-152 (181)
170 PRK13984 putative oxidoreducta 94.8 0.0067 1.5E-07 62.3 -0.5 61 199-277 41-102 (604)
171 PF12798 Fer4_3: 4Fe-4S bindin 94.8 0.006 1.3E-07 31.8 -0.5 14 205-218 1-14 (15)
172 PRK07118 ferredoxin; Validated 94.7 0.0066 1.4E-07 56.9 -0.7 47 203-278 139-185 (280)
173 PRK12769 putative oxidoreducta 94.6 0.0038 8.3E-08 64.9 -2.8 22 198-219 5-26 (654)
174 TIGR00397 mauM_napG MauM/NapG 94.6 0.006 1.3E-07 54.9 -1.3 18 260-277 174-191 (213)
175 PRK09853 putative selenate red 94.6 0.019 4.1E-07 62.4 2.2 58 200-279 883-944 (1019)
176 PRK09476 napG quinol dehydroge 94.5 0.0065 1.4E-07 56.1 -1.3 18 202-219 58-75 (254)
177 TIGR01660 narH nitrate reducta 94.5 0.011 2.3E-07 58.7 0.1 20 259-278 239-267 (492)
178 COG2871 NqrF Na+-transporting 94.4 0.061 1.3E-06 50.5 4.9 65 56-139 33-119 (410)
179 TIGR01582 FDH-beta formate deh 94.4 0.0094 2E-07 55.9 -0.5 51 200-278 88-141 (283)
180 TIGR03294 FrhG coenzyme F420 h 94.3 0.0065 1.4E-07 55.2 -1.7 54 199-281 170-223 (228)
181 PRK07118 ferredoxin; Validated 94.3 0.01 2.3E-07 55.5 -0.5 48 202-278 212-259 (280)
182 PRK09898 hypothetical protein; 94.3 0.012 2.6E-07 52.6 -0.1 52 200-278 118-171 (208)
183 TIGR02486 RDH reductive dehalo 94.2 0.022 4.7E-07 54.3 1.6 28 265-292 268-295 (314)
184 TIGR03315 Se_ygfK putative sel 94.2 0.013 2.9E-07 63.6 0.2 17 262-278 922-938 (1012)
185 COG4231 Indolepyruvate ferredo 94.1 0.01 2.2E-07 60.7 -1.0 52 198-278 572-625 (640)
186 PRK12809 putative oxidoreducta 94.1 0.036 7.8E-07 57.5 3.0 29 260-288 207-238 (639)
187 PRK10330 formate dehydrogenase 94.0 0.0036 7.8E-08 54.6 -3.9 21 198-218 5-25 (181)
188 PRK12771 putative glutamate sy 93.9 0.017 3.7E-07 58.9 0.1 18 260-277 540-557 (564)
189 COG1148 HdrA Heterodisulfide r 93.8 0.018 3.9E-07 57.5 0.1 64 203-277 224-287 (622)
190 PF12797 Fer4_2: 4Fe-4S bindin 93.7 0.022 4.7E-07 32.8 0.3 17 259-275 6-22 (22)
191 PRK08364 sulfur carrier protei 93.5 0.47 1E-05 34.9 7.3 56 57-139 2-57 (70)
192 COG1142 HycB Fe-S-cluster-cont 93.4 0.016 3.5E-07 50.1 -0.8 24 197-220 76-99 (165)
193 cd07030 RNAP_D D subunit of Ar 93.1 0.015 3.3E-07 53.6 -1.6 46 203-276 169-214 (259)
194 TIGR02951 DMSO_dmsB DMSO reduc 93.0 0.021 4.4E-07 48.9 -0.8 52 200-278 59-112 (161)
195 PRK12809 putative oxidoreducta 93.0 0.0099 2.1E-07 61.7 -3.4 21 198-218 5-25 (639)
196 PRK00054 dihydroorotate dehydr 92.9 0.046 1E-06 49.8 1.2 25 111-135 215-239 (250)
197 PRK12769 putative oxidoreducta 92.8 0.036 7.8E-07 57.7 0.5 57 198-278 80-142 (654)
198 PRK14993 tetrathionate reducta 92.7 0.038 8.2E-07 50.8 0.4 49 202-278 97-147 (244)
199 PF13746 Fer4_18: 4Fe-4S diclu 92.6 0.046 9.9E-07 40.4 0.7 20 200-219 47-66 (69)
200 PRK00783 DNA-directed RNA poly 92.4 0.02 4.3E-07 53.0 -1.8 47 202-276 168-214 (263)
201 COG2221 DsrA Dissimilatory sul 92.3 0.018 3.8E-07 54.5 -2.3 48 201-277 170-217 (317)
202 PF13187 Fer4_9: 4Fe-4S diclus 92.3 0.046 1E-06 37.7 0.3 17 262-278 1-17 (55)
203 COG3894 Uncharacterized metal- 91.6 0.14 3E-06 51.3 2.9 44 89-138 17-79 (614)
204 TIGR02066 dsrB sulfite reducta 91.6 0.059 1.3E-06 51.9 0.3 18 260-277 213-230 (341)
205 PRK05352 Na(+)-translocating N 91.4 0.13 2.8E-06 51.3 2.5 30 259-288 372-401 (448)
206 TIGR01936 nqrA NADH:ubiquinone 91.0 0.2 4.4E-06 50.0 3.4 30 259-288 371-400 (447)
207 PRK12387 formate hydrogenlyase 90.9 0.25 5.4E-06 43.1 3.6 19 259-277 151-169 (180)
208 PF13237 Fer4_10: 4Fe-4S diclu 90.4 0.052 1.1E-06 37.2 -1.0 17 200-216 36-52 (52)
209 PF14697 Fer4_21: 4Fe-4S diclu 90.2 0.12 2.6E-06 36.9 0.8 16 202-217 38-53 (59)
210 PF13247 Fer4_11: 4Fe-4S diclu 90.2 0.018 3.9E-07 45.6 -3.9 51 201-278 5-57 (98)
211 COG1143 NuoI Formate hydrogenl 90.0 0.11 2.4E-06 45.3 0.5 21 200-220 92-112 (172)
212 PF13534 Fer4_17: 4Fe-4S diclu 89.8 0.03 6.4E-07 39.7 -2.7 17 262-278 1-17 (61)
213 PF13484 Fer4_16: 4Fe-4S doubl 89.8 0.07 1.5E-06 38.5 -0.7 18 262-279 1-18 (67)
214 COG0437 HybA Fe-S-cluster-cont 89.5 0.11 2.3E-06 46.5 0.0 52 200-278 64-117 (203)
215 COG1600 Uncharacterized Fe-S p 89.4 0.27 5.8E-06 47.3 2.6 65 203-276 185-249 (337)
216 KOG3256 NADH:ubiquinone oxidor 89.3 0.12 2.7E-06 44.5 0.2 21 200-220 147-167 (212)
217 PRK15449 ferredoxin-like prote 88.9 0.11 2.3E-06 41.0 -0.3 20 259-278 59-78 (95)
218 PF12838 Fer4_7: 4Fe-4S diclus 88.4 0.079 1.7E-06 36.4 -1.2 17 262-278 1-17 (52)
219 TIGR02745 ccoG_rdxA_fixG cytoc 88.4 0.19 4.1E-06 50.0 0.9 20 260-279 230-249 (434)
220 COG0479 FrdB Succinate dehydro 88.0 0.39 8.5E-06 43.9 2.7 35 259-293 140-179 (234)
221 PRK01777 hypothetical protein; 88.0 4.2 9E-05 32.0 8.2 64 59-139 3-67 (95)
222 cd06192 DHOD_e_trans_like FAD/ 88.0 0.38 8.2E-06 43.4 2.6 29 107-135 210-238 (243)
223 cd06219 DHOD_e_trans_like1 FAD 87.6 0.38 8.3E-06 43.7 2.4 26 110-135 213-238 (248)
224 PRK05659 sulfur carrier protei 87.5 2.1 4.5E-05 30.7 5.8 47 83-147 10-59 (66)
225 COG1150 HdrC Heterodisulfide r 87.4 0.29 6.3E-06 43.3 1.4 32 260-291 38-73 (195)
226 PRK05802 hypothetical protein; 86.9 0.52 1.1E-05 44.9 2.9 33 106-138 285-318 (320)
227 cd06218 DHOD_e_trans FAD/NAD b 86.2 0.48 1E-05 43.0 2.2 42 92-135 195-241 (246)
228 PF13183 Fer4_8: 4Fe-4S diclus 85.9 0.035 7.5E-07 38.6 -4.3 18 260-277 2-19 (57)
229 PRK06222 ferredoxin-NADP(+) re 85.6 0.59 1.3E-05 43.5 2.5 43 92-134 196-238 (281)
230 cd06220 DHOD_e_trans_like2 FAD 85.6 0.5 1.1E-05 42.4 2.0 21 112-134 202-222 (233)
231 COG1145 NapF Ferredoxin [Energ 85.6 0.25 5.4E-06 37.7 0.0 19 259-277 27-45 (99)
232 PRK12814 putative NADPH-depend 85.1 0.22 4.8E-06 51.9 -0.6 25 195-219 608-632 (652)
233 PF10418 DHODB_Fe-S_bind: Iron 84.8 0.65 1.4E-05 30.6 1.7 24 111-134 4-29 (40)
234 PLN00071 photosystem I subunit 84.6 0.29 6.2E-06 36.7 -0.0 19 202-220 45-63 (81)
235 TIGR02163 napH_ ferredoxin-typ 84.4 0.25 5.4E-06 45.6 -0.6 18 260-277 200-217 (255)
236 PRK05035 electron transport co 84.2 0.49 1.1E-05 49.8 1.4 28 260-287 369-396 (695)
237 PRK08345 cytochrome-c3 hydroge 83.8 0.44 9.5E-06 44.5 0.8 44 92-135 227-273 (289)
238 PRK09626 oorD 2-oxoglutarate-a 83.7 0.39 8.4E-06 37.9 0.3 18 260-277 15-32 (103)
239 COG1941 FrhG Coenzyme F420-red 83.5 0.34 7.4E-06 44.2 -0.0 60 197-288 184-243 (247)
240 PRK08222 hydrogenase 4 subunit 83.4 1 2.2E-05 39.5 2.8 18 202-219 72-89 (181)
241 TIGR03048 PS_I_psaC photosyste 82.6 0.5 1.1E-05 35.4 0.5 19 259-277 6-24 (80)
242 TIGR01945 rnfC electron transp 82.5 0.75 1.6E-05 45.7 1.9 26 259-284 361-386 (435)
243 PRK02651 photosystem I subunit 82.2 0.31 6.8E-06 36.4 -0.7 28 202-229 45-72 (81)
244 TIGR02936 fdxN_nitrog ferredox 82.2 0.41 8.8E-06 36.5 -0.1 19 259-277 19-37 (91)
245 PRK08348 NADH-plastoquinone ox 82.2 0.5 1.1E-05 38.3 0.5 18 260-277 41-58 (120)
246 COG1152 CdhA CO dehydrogenase/ 81.9 0.69 1.5E-05 47.3 1.3 28 260-287 399-426 (772)
247 CHL00065 psaC photosystem I su 81.8 0.48 1E-05 35.6 0.2 18 260-277 8-25 (81)
248 PF14691 Fer4_20: Dihydroprymi 81.7 0.8 1.7E-05 37.0 1.5 29 260-288 21-51 (111)
249 PRK05888 NADH dehydrogenase su 81.7 0.6 1.3E-05 40.0 0.8 19 259-277 56-74 (164)
250 COG1142 HycB Fe-S-cluster-cont 81.5 0.57 1.2E-05 40.6 0.6 19 260-278 81-99 (165)
251 TIGR03290 CoB_CoM_SS_C CoB--Co 81.4 1.3 2.8E-05 37.1 2.7 19 201-219 44-62 (144)
252 COG1146 Ferredoxin [Energy pro 80.4 0.61 1.3E-05 33.9 0.3 22 198-219 36-57 (68)
253 CHL00014 ndhI NADH dehydrogena 80.4 0.72 1.6E-05 39.8 0.8 19 260-278 58-76 (167)
254 TIGR00403 ndhI NADH-plastoquin 80.2 0.81 1.8E-05 40.2 1.1 18 260-277 61-78 (183)
255 PF13459 Fer4_15: 4Fe-4S singl 80.0 0.61 1.3E-05 33.6 0.2 19 201-219 4-22 (65)
256 TIGR00384 dhsB succinate dehyd 80.0 1.1 2.4E-05 40.2 2.0 20 200-219 191-210 (220)
257 PRK15055 anaerobic sulfite red 79.8 1.4 3.1E-05 42.5 2.7 19 201-219 305-323 (344)
258 PRK12575 succinate dehydrogena 79.8 1.4 3E-05 40.3 2.6 31 259-289 142-179 (235)
259 COG1453 Predicted oxidoreducta 79.3 1.7 3.6E-05 42.3 3.0 27 262-289 294-320 (391)
260 PRK12576 succinate dehydrogena 79.2 1.5 3.3E-05 41.0 2.7 18 259-276 150-167 (279)
261 TIGR01971 NuoI NADH-quinone ox 79.2 0.59 1.3E-05 37.7 -0.1 18 260-277 42-59 (122)
262 PRK08640 sdhB succinate dehydr 79.0 1.4 3.1E-05 40.5 2.4 20 259-278 150-169 (249)
263 COG2440 FixX Ferredoxin-like p 78.9 0.65 1.4E-05 36.6 0.1 49 201-277 31-81 (99)
264 cd01916 ACS_1 Acetyl-CoA synth 78.8 1.2 2.7E-05 47.0 2.1 29 259-287 363-391 (731)
265 TIGR02910 sulfite_red_A sulfit 78.8 1.5 3.3E-05 42.2 2.5 19 201-219 299-317 (334)
266 COG4656 RnfC Predicted NADH:ub 78.4 1.1 2.4E-05 45.2 1.5 27 262-288 366-392 (529)
267 TIGR00273 iron-sulfur cluster- 78.1 0.82 1.8E-05 45.5 0.5 18 259-276 291-308 (432)
268 PRK05950 sdhB succinate dehydr 77.2 1.6 3.5E-05 39.6 2.1 18 259-276 139-156 (232)
269 COG1141 Fer Ferredoxin [Energy 77.1 0.9 2E-05 33.6 0.4 19 201-219 6-24 (68)
270 PF13370 Fer4_13: 4Fe-4S singl 77.0 0.52 1.1E-05 33.4 -0.9 18 202-219 3-20 (58)
271 PRK06273 ferredoxin; Provision 76.3 0.81 1.8E-05 39.6 -0.0 19 260-278 48-66 (165)
272 PRK12386 fumarate reductase ir 76.1 1.1 2.3E-05 41.5 0.7 18 259-276 140-157 (251)
273 PRK07570 succinate dehydrogena 76.0 1.2 2.7E-05 41.0 1.1 18 259-276 155-172 (250)
274 TIGR00314 cdhA CO dehydrogenas 75.9 1.7 3.6E-05 46.2 2.1 27 259-285 397-423 (784)
275 TIGR01318 gltD_gamma_fam gluta 75.4 2 4.2E-05 43.0 2.4 29 260-288 39-69 (467)
276 PRK13030 2-oxoacid ferredoxin 75.3 0.99 2.1E-05 50.1 0.3 53 200-279 626-681 (1159)
277 PRK12385 fumarate reductase ir 74.9 2.4 5.3E-05 38.9 2.7 20 200-219 200-219 (244)
278 PF14691 Fer4_20: Dihydroprymi 74.8 2.3 5.1E-05 34.3 2.3 81 198-292 17-104 (111)
279 PRK15449 ferredoxin-like prote 74.8 1.1 2.5E-05 35.2 0.4 22 197-218 55-76 (95)
280 COG1144 Pyruvate:ferredoxin ox 74.5 1.1 2.4E-05 34.8 0.3 19 200-218 63-81 (91)
281 TIGR02179 PorD_KorD 2-oxoacid: 74.0 1.1 2.5E-05 33.0 0.2 18 260-277 24-41 (78)
282 KOG3309 Ferredoxin [Energy pro 73.5 9.5 0.00021 32.6 5.6 52 62-127 44-96 (159)
283 PLN00129 succinate dehydrogena 73.3 1.4 2.9E-05 41.4 0.6 17 259-275 185-201 (276)
284 TIGR02494 PFLE_PFLC glycyl-rad 73.2 1.4 2.9E-05 41.1 0.6 19 260-278 47-65 (295)
285 COG3383 Uncharacterized anaero 73.2 1 2.2E-05 47.5 -0.3 27 202-228 191-217 (978)
286 PRK11274 glcF glycolate oxidas 72.9 2.4 5.2E-05 41.4 2.3 33 259-291 21-60 (407)
287 TIGR00402 napF ferredoxin-type 72.3 1.3 2.9E-05 34.8 0.3 19 260-278 33-51 (101)
288 PRK09625 porD pyruvate flavodo 72.1 1.1 2.4E-05 37.3 -0.3 18 202-219 88-105 (133)
289 PRK12577 succinate dehydrogena 71.2 1.5 3.3E-05 41.9 0.5 18 259-276 150-167 (329)
290 PRK00941 acetyl-CoA decarbonyl 71.0 2.5 5.4E-05 45.0 1.9 28 259-286 402-429 (781)
291 PRK09193 indolepyruvate ferred 71.0 1.4 3.1E-05 48.8 0.2 53 199-278 639-694 (1165)
292 TIGR02066 dsrB sulfite reducta 70.9 1.5 3.3E-05 42.3 0.3 24 197-220 208-231 (341)
293 PRK13029 2-oxoacid ferredoxin 70.9 1.4 3.1E-05 48.8 0.2 53 199-278 653-708 (1186)
294 PRK13552 frdB fumarate reducta 70.3 1.6 3.5E-05 40.0 0.3 18 259-276 147-164 (239)
295 PRK09624 porD pyuvate ferredox 69.8 1.7 3.7E-05 34.6 0.4 19 201-219 79-97 (105)
296 TIGR01683 thiS thiamine biosyn 69.7 14 0.00031 26.2 5.2 47 83-147 8-57 (64)
297 COG0493 GltD NADPH-dependent g 69.4 2.9 6.4E-05 41.9 2.0 85 197-295 17-108 (457)
298 PRK06083 sulfur carrier protei 67.5 18 0.0004 27.6 5.6 45 56-130 15-59 (84)
299 PRK09477 napH quinol dehydroge 66.9 2.7 5.8E-05 39.1 1.1 20 259-278 206-225 (271)
300 PRK06991 ferredoxin; Provision 66.9 1.9 4E-05 40.3 0.0 18 260-277 84-101 (270)
301 PRK12810 gltD glutamate syntha 66.7 3.7 8E-05 41.0 2.1 29 260-288 43-73 (471)
302 COG1139 Uncharacterized conser 66.4 2.7 5.8E-05 41.7 1.0 22 198-219 353-374 (459)
303 TIGR01318 gltD_gamma_fam gluta 66.0 8.6 0.00019 38.4 4.6 23 197-219 34-58 (467)
304 TIGR01944 rnfB electron transp 65.5 2.3 5E-05 36.5 0.4 18 260-277 112-129 (165)
305 COG1035 FrhB Coenzyme F420-red 64.8 2.1 4.7E-05 41.1 0.0 17 201-217 3-19 (332)
306 PF13459 Fer4_15: 4Fe-4S singl 64.8 2.4 5.3E-05 30.4 0.3 16 260-275 5-20 (65)
307 PRK12831 putative oxidoreducta 64.7 4.5 9.8E-05 40.4 2.3 29 260-288 39-69 (464)
308 PRK07440 hypothetical protein; 64.6 21 0.00046 26.1 5.3 51 59-139 4-57 (70)
309 TIGR02912 sulfite_red_C sulfit 64.1 2.4 5.1E-05 40.2 0.1 22 198-219 196-217 (314)
310 COG1141 Fer Ferredoxin [Energy 64.0 2.5 5.5E-05 31.2 0.3 18 261-278 8-25 (68)
311 PRK08053 sulfur carrier protei 63.9 19 0.00042 25.8 5.0 34 79-130 8-41 (66)
312 PRK06437 hypothetical protein; 63.8 22 0.00048 25.8 5.3 33 83-131 15-47 (67)
313 PRK09326 F420H2 dehydrogenase 63.7 3 6.5E-05 40.0 0.8 19 201-219 51-69 (341)
314 PRK09623 vorD 2-ketoisovalerat 63.6 2.4 5.3E-05 33.6 0.1 19 259-277 49-67 (105)
315 PRK08764 ferredoxin; Provision 63.1 2.6 5.5E-05 35.0 0.2 17 261-277 85-101 (135)
316 TIGR01316 gltA glutamate synth 62.6 5.5 0.00012 39.5 2.4 29 260-288 25-57 (449)
317 COG4231 Indolepyruvate ferredo 62.5 2.5 5.4E-05 43.7 -0.0 24 196-219 601-624 (640)
318 PRK05113 electron transport co 62.4 2.7 5.9E-05 37.1 0.2 18 260-277 113-130 (191)
319 TIGR00276 iron-sulfur cluster 62.4 2.5 5.3E-05 39.7 -0.1 19 260-278 158-176 (282)
320 cd00565 ThiS ThiaminS ubiquiti 62.0 17 0.00038 25.8 4.4 47 83-147 9-58 (65)
321 PRK14028 pyruvate ferredoxin o 61.7 3 6.5E-05 39.4 0.4 18 260-277 246-263 (312)
322 COG2104 ThiS Sulfur transfer p 61.4 23 0.0005 26.0 5.0 33 83-131 12-44 (68)
323 PRK12810 gltD glutamate syntha 61.1 9.7 0.00021 38.0 3.9 23 197-219 38-62 (471)
324 PRK11168 glpC sn-glycerol-3-ph 60.8 7.3 0.00016 37.7 2.9 20 200-219 51-70 (396)
325 TIGR02486 RDH reductive dehalo 60.7 3 6.5E-05 39.8 0.2 18 261-278 205-222 (314)
326 PRK11749 dihydropyrimidine deh 60.2 5.2 0.00011 39.6 1.8 29 260-288 39-69 (457)
327 COG0348 NapH Polyferredoxin [E 60.1 2.6 5.6E-05 41.3 -0.4 17 262-278 246-262 (386)
328 TIGR01316 gltA glutamate synth 59.6 13 0.00029 36.8 4.6 81 198-291 21-114 (449)
329 TIGR02060 aprB adenosine phosp 58.5 4 8.7E-05 34.0 0.6 19 260-278 7-30 (132)
330 PRK06259 succinate dehydrogena 57.8 4.3 9.3E-05 40.7 0.8 19 259-277 131-149 (486)
331 PF14157 YmzC: YmzC-like prote 57.7 6.6 0.00014 28.5 1.5 11 61-71 40-50 (63)
332 TIGR02700 flavo_MJ0208 archaeo 57.2 4 8.7E-05 37.0 0.4 17 261-277 148-164 (234)
333 COG2221 DsrA Dissimilatory sul 56.9 3.2 7E-05 39.5 -0.3 20 198-217 196-215 (317)
334 PF14451 Ub-Mut7C: Mut7-C ubiq 56.5 28 0.0006 26.5 4.9 55 79-151 23-77 (81)
335 PRK12778 putative bifunctional 55.1 7.1 0.00015 41.4 1.9 29 260-288 328-358 (752)
336 cd06221 sulfite_reductase_like 55.1 5.5 0.00012 36.2 0.9 39 92-134 205-246 (253)
337 COG1245 Predicted ATPase, RNas 54.9 4.7 0.0001 40.6 0.5 19 260-278 49-67 (591)
338 PRK12775 putative trifunctiona 53.3 8.8 0.00019 42.3 2.3 28 261-288 331-360 (1006)
339 PRK12831 putative oxidoreducta 52.4 17 0.00036 36.3 3.9 23 197-219 34-58 (464)
340 TIGR03379 glycerol3P_GlpC glyc 52.2 11 0.00024 36.6 2.6 19 201-219 50-68 (397)
341 TIGR03287 methan_mark_16 putat 52.0 4.2 9.1E-05 39.9 -0.4 20 200-219 327-346 (391)
342 TIGR02176 pyruv_ox_red pyruvat 51.7 6 0.00013 44.3 0.7 19 200-218 736-754 (1165)
343 TIGR02512 Fe_only_hydrog hydro 51.1 5.5 0.00012 38.7 0.3 19 201-219 48-66 (374)
344 PRK13409 putative ATPase RIL; 50.9 6.5 0.00014 40.7 0.8 19 260-278 48-66 (590)
345 PRK08318 dihydropyrimidine deh 50.8 5.4 0.00012 39.3 0.2 18 200-217 374-391 (420)
346 PRK07569 bidirectional hydroge 49.2 5.3 0.00011 36.2 -0.2 19 202-220 189-207 (234)
347 PRK08493 NADH dehydrogenase su 49.0 7.3 0.00016 41.9 0.8 19 202-220 203-221 (819)
348 PF02597 ThiS: ThiS family; I 48.9 43 0.00093 24.1 4.8 42 81-132 14-55 (77)
349 cd00754 MoaD Ubiquitin domain 48.1 48 0.001 24.0 5.0 57 81-148 18-74 (80)
350 PRK15033 tricarballylate utili 47.9 7.4 0.00016 38.2 0.6 16 202-217 66-81 (389)
351 PRK09853 putative selenate red 47.7 7.5 0.00016 42.8 0.7 20 260-279 885-908 (1019)
352 TIGR03294 FrhG coenzyme F420 h 47.4 5.3 0.00011 36.3 -0.5 18 260-277 173-190 (228)
353 COG1149 MinD superfamily P-loo 46.8 7.8 0.00017 36.3 0.5 18 261-278 69-86 (284)
354 PRK05863 sulfur carrier protei 46.3 43 0.00093 23.9 4.3 32 79-128 8-39 (65)
355 COG1245 Predicted ATPase, RNas 45.9 7.9 0.00017 39.1 0.5 17 203-219 50-66 (591)
356 PRK12779 putative bifunctional 45.7 16 0.00034 40.1 2.8 29 107-135 877-909 (944)
357 PRK13409 putative ATPase RIL; 44.4 7.9 0.00017 40.1 0.2 18 202-219 48-65 (590)
358 PF02824 TGS: TGS domain; Int 44.0 36 0.00078 24.0 3.5 33 84-130 12-44 (60)
359 cd07030 RNAP_D D subunit of Ar 43.4 7.9 0.00017 35.6 0.0 32 77-110 11-42 (259)
360 COG1600 Uncharacterized Fe-S p 43.3 8.3 0.00018 37.2 0.2 21 261-281 185-205 (337)
361 COG2768 Uncharacterized Fe-S c 43.3 8.5 0.00018 36.7 0.2 20 200-219 218-237 (354)
362 PRK00783 DNA-directed RNA poly 42.8 8.3 0.00018 35.6 0.1 32 77-110 11-42 (263)
363 PRK13795 hypothetical protein; 42.5 8.5 0.00018 40.2 0.1 18 260-277 580-597 (636)
364 PRK08221 anaerobic sulfite red 42.1 11 0.00025 34.5 0.9 18 107-124 225-242 (263)
365 TIGR02911 sulfite_red_B sulfit 41.6 12 0.00025 34.4 0.8 24 107-134 223-246 (261)
366 TIGR01317 GOGAT_sm_gam glutama 41.4 17 0.00037 36.5 2.1 28 260-287 41-72 (485)
367 COG0348 NapH Polyferredoxin [E 41.1 8.7 0.00019 37.6 -0.1 16 204-219 246-261 (386)
368 PLN02799 Molybdopterin synthas 39.7 64 0.0014 23.8 4.6 58 79-148 19-76 (82)
369 COG0247 GlpC Fe-S oxidoreducta 39.2 17 0.00037 34.8 1.6 21 199-219 54-74 (388)
370 PRK06488 sulfur carrier protei 38.9 1.1E+02 0.0024 21.5 5.5 42 79-139 8-52 (65)
371 PRK12779 putative bifunctional 38.7 18 0.0004 39.6 1.9 29 260-288 187-229 (944)
372 PRK12771 putative glutamate sy 38.6 10 0.00022 38.7 -0.0 19 200-218 538-556 (564)
373 TIGR01973 NuoG NADH-quinone ox 36.7 12 0.00026 38.6 0.2 17 204-220 183-199 (603)
374 TIGR02064 dsrA sulfite reducta 36.3 14 0.00031 36.5 0.6 22 197-218 266-287 (402)
375 COG2440 FixX Ferredoxin-like p 36.0 12 0.00026 29.6 0.0 21 197-217 59-79 (99)
376 TIGR01682 moaD molybdopterin c 36.0 1.1E+02 0.0023 22.5 5.2 57 82-149 19-75 (80)
377 PRK07696 sulfur carrier protei 35.9 94 0.002 22.4 4.8 34 79-130 8-42 (67)
378 COG0493 GltD NADPH-dependent g 35.7 14 0.00031 37.1 0.5 30 260-289 22-52 (457)
379 TIGR03315 Se_ygfK putative sel 35.7 14 0.0003 40.9 0.4 18 261-278 881-902 (1012)
380 TIGR03336 IOR_alpha indolepyru 35.0 11 0.00024 39.0 -0.5 14 204-217 579-592 (595)
381 TIGR02064 dsrA sulfite reducta 34.7 16 0.00036 36.0 0.7 21 260-280 271-291 (402)
382 COG1140 NarY Nitrate reductase 34.3 20 0.00043 35.2 1.2 25 196-220 7-31 (513)
383 PRK06944 sulfur carrier protei 33.6 1.1E+02 0.0023 21.4 4.7 31 83-130 10-40 (65)
384 cd01764 Urm1 Urm1-like ubuitin 33.3 1.1E+02 0.0023 23.8 5.0 63 83-149 23-89 (94)
385 PRK11749 dihydropyrimidine deh 32.8 33 0.00071 33.9 2.5 23 197-219 34-58 (457)
386 TIGR03224 benzo_boxA benzoyl-C 32.7 13 0.00029 36.6 -0.3 18 202-219 38-55 (411)
387 PRK06567 putative bifunctional 32.1 31 0.00067 38.1 2.3 46 90-135 944-999 (1028)
388 TIGR02484 CitB CitB domain pro 31.0 34 0.00074 33.5 2.2 17 202-218 47-63 (372)
389 cd01666 TGS_DRG_C TGS_DRG_C: 30.9 63 0.0014 24.1 3.2 35 62-101 2-36 (75)
390 PRK11130 moaD molybdopterin sy 28.0 1.1E+02 0.0024 22.7 4.2 76 59-149 1-76 (81)
391 PTZ00305 NADH:ubiquinone oxido 27.8 17 0.00037 34.4 -0.4 16 260-275 211-226 (297)
392 PRK13669 hypothetical protein; 27.1 42 0.00092 25.4 1.7 29 103-132 25-58 (78)
393 TIGR01317 GOGAT_sm_gam glutama 26.1 77 0.0017 31.8 3.8 23 197-219 36-62 (485)
394 KOG3049 Succinate dehydrogenas 26.0 17 0.00037 32.9 -0.7 30 258-287 189-225 (288)
395 PF07293 DUF1450: Protein of u 26.0 65 0.0014 24.4 2.5 28 104-132 26-58 (78)
396 PF15253 STIL_N: SCL-interrupt 24.9 53 0.0012 32.5 2.4 17 56-72 58-74 (410)
397 COG2878 Predicted NADH:ubiquin 24.7 34 0.00075 30.2 0.9 18 202-219 144-161 (198)
398 PRK07860 NADH dehydrogenase su 20.9 48 0.001 35.6 1.3 19 203-221 190-208 (797)
No 1
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-64 Score=454.04 Aligned_cols=231 Identities=52% Similarity=0.970 Sum_probs=214.0
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID 138 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~ 138 (302)
+++|+|+||||+. + +|||++|+|++++ |+||||||.+|+.++||+|+||.+||+|+||||+|+|||+++|||+|.+.
T Consensus 2 ~~~~~i~R~~p~~-~-~p~~~~yev~~~~-~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~ 78 (234)
T COG0479 2 TLKFKIYRYNPDD-D-KPYWQTYEVPYDE-GMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMK 78 (234)
T ss_pred cEEEEEEEECCCC-C-CcceEEEEecCCC-CCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCccccchhchhh
Confidence 6899999999998 4 9999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCc
Q 045926 139 GDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSY 218 (302)
Q Consensus 139 ~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~ 218 (302)
+.....++|+||++||+|||||||+++||+++++++||+.......+++ ++|++++++.++++..||.||.|+++||++
T Consensus 79 ~~~~~~i~iePL~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~~~~~~~~-~~q~pe~~~~~~~~~~CI~Cg~C~s~CP~~ 157 (234)
T COG0479 79 DLEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPDPGE-RLQSPEEREKLDELSECILCGCCTAACPSI 157 (234)
T ss_pred hccCCceEEEECCCCCceeeeeeccHHHHHhhhccccceecCCcCCCcc-ccCCHHHHHHHHhhhhccccchhhhhCCcc
Confidence 8654589999999999999999999999999999999998853333334 899999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcCC
Q 045926 219 WWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQP 295 (302)
Q Consensus 219 ~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~~ 295 (302)
++++ +|+||+++.+++||+.|+||+.+.+|+..+.++. ++|.|++|++|+++||+||++..+|..||+.+++++.
T Consensus 158 ~~~~-~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~-gv~~C~~~~~C~~vCPK~i~p~~aI~~lk~~~~~~~~ 232 (234)
T COG0479 158 WWNP-DFLGPAALRQAYRFLADSRDEGTAERLKILEDPD-GVWRCTTCGNCTEVCPKGIPPAKAIAELKRRLAKRGL 232 (234)
T ss_pred cccc-CCcCHHHHHHHHHHhcCCcccchHHHHHhccCCC-CEecccccccccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9765 8999999999999999999998888998777666 8999999999999999999999999999998877653
No 2
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=100.00 E-value=8.3e-64 Score=460.93 Aligned_cols=268 Identities=67% Similarity=1.186 Sum_probs=234.7
Q ss_pred ccccchhhhhccccccccccCCCCccCCChhhHHhHHHhhhccccccccccceeEEEEEEecCCCCCCCCCceeEEEEec
Q 045926 6 FLRRGYNKVAGIFGRAEAKKQDFPVLEGHPAAQESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDL 85 (302)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~ 85 (302)
.||+++..|+|+..- ++...+-..+|+..++.-.++.++++|+|+||||+. +.+|||++|+|++
T Consensus 5 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~p~~-~~~~~~~~y~v~~ 68 (276)
T PLN00129 5 LLRRLAGAKAGLLAP---------------AAAASAAASAETKASSKGSKPSNLKEFQIYRWNPDN-PGKPHLQSYKVDL 68 (276)
T ss_pred hhhhhhccccccccc---------------chhhhhhhcccccccCCCCCCCceEEEEEEeeCCCC-CCCceeEEEEeCC
Confidence 466777777776433 345666677888888777788889999999999987 5699999999998
Q ss_pred CCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccCCCCCceEEccCCCchhhhhhhhccch
Q 045926 86 SECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTN 165 (302)
Q Consensus 86 ~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~~~~~Iepl~~~~vikDLvvD~~~ 165 (302)
.+.|+||||||++|+.++||+|+||.+||+|+||+|+|+|||+++|||.|.|.++.++.++||||++||+|||||||+++
T Consensus 69 ~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~p~LAC~t~v~~~~~~~i~iePl~~fpVirDLvVD~~~ 148 (276)
T PLN00129 69 NDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGKNTLACLTKIDRDESGPTTITPLPHMFVIKDLVVDMTN 148 (276)
T ss_pred CCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCcccccccccHhhcCCCcEEEEECCCCCeeeecccccHH
Confidence 75479999999999989999999999999999999999999999999999999864467899999999999999999999
Q ss_pred hhhhccccccccccCCCCCCC-ccccCChhHHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcch
Q 045926 166 FYQQYKSIEPWLKTNMVPKDG-REYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDE 244 (302)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~-~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~ 244 (302)
||+++++++||+..+...+.. .+++|++++.+.++.+..||+||.|.++||++.++.++|+||++++.++|++.|+|+.
T Consensus 149 f~~klk~v~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~ 228 (276)
T PLN00129 149 FYQQYKSIEPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDE 228 (276)
T ss_pred HHHHHHhccccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccccccCCCcccCcccccHHHHHHHHHhcCCcccc
Confidence 999999999999865433222 3688999999999999999999999999999987777899999999999999899987
Q ss_pred hHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHH
Q 045926 245 LTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKH 290 (302)
Q Consensus 245 ~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l 290 (302)
..+++++.+.+.. ++|.|++||+|+.+||+||++.++|..+|+.+
T Consensus 229 ~~~erl~~l~~~~-gl~~C~~C~~C~~vCPkgI~p~~~I~~lR~~~ 273 (276)
T PLN00129 229 YTKERLEALDDEF-KLYRCHTIRNCSNACPKGLNPAKAIAKIKQLL 273 (276)
T ss_pred chHHHHHHHHhcC-CCCcCcChhhccccCCCCCCHHHHHHHHHHHH
Confidence 6677877665555 89999999999999999999999999999764
No 3
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-64 Score=439.02 Aligned_cols=238 Identities=65% Similarity=1.188 Sum_probs=226.1
Q ss_pred ccceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccc
Q 045926 55 VKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACL 134 (302)
Q Consensus 55 ~~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~ 134 (302)
.+.+.+||.||||||+.|+.+|+.|+|+|+.+++|.+|||||.+|+++.||||.||+|||+||||||+|+|||.+.|||.
T Consensus 42 ~~~rlKtFeIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~G~NtLACi 121 (288)
T KOG3049|consen 42 TGPRLKTFEIYRWNPDNPGDKPHLQTYEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNINGTNTLACI 121 (288)
T ss_pred cCCccceEEEEecCCCCCCCCccceeeeecHHhcchHHHHHHHHhhcccCCceehhhhhhccccccceeccCCCceeEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCC--CccccCChhHHhhccccccCcccCccc
Q 045926 135 KPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKD--GREYRQSPADRKKLDGLYECILCACCT 212 (302)
Q Consensus 135 t~v~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~--~~e~~~s~~~~~~~~~~~~CI~CG~C~ 212 (302)
+.++....+..+|.||+|+.++||||.|++.||++|++++|||+.++...+ +++++||.+++..+++++.||+|.+|+
T Consensus 122 ~kId~n~sK~~kIyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk~~~~~~g~~q~lQS~~dR~kLDGlYECILCACCs 201 (288)
T KOG3049|consen 122 CKIDQNESKSTKIYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRKNPAKEPGKKQYLQSVEDRAKLDGLYECILCACCS 201 (288)
T ss_pred EeeccCCcccceeecCcceeeehhhcccHHHHHHHHhcccHHhhcCCcccCccHHHHHHhHHHHHhhccHHHHHHHHHhc
Confidence 999986677889999999999999999999999999999999988776543 378999999999999999999999999
Q ss_pred CCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhh
Q 045926 213 TSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHML 292 (302)
Q Consensus 213 ~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~ 292 (302)
.+||+||||.+.|+||++++++|||+.|+||+.+.+|+..+.+++ .+|+|++..+|+..||+|++|+.+|.+++..+..
T Consensus 202 TSCPSYWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~-slyrCHtImNCtrtCPKgLNPg~aI~eiK~ll~~ 280 (288)
T KOG3049|consen 202 TSCPSYWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLAKLQDPF-SLYRCHTIMNCTRTCPKGLNPGKAIAEIKKLLAG 280 (288)
T ss_pred CCCcccccCcccccCHHHHHHHHhhhhcchhHHHHHHHHHhcCch-hheehhhhhhhhhcCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998888 9999999999999999999999999999998865
Q ss_pred c
Q 045926 293 S 293 (302)
Q Consensus 293 ~ 293 (302)
.
T Consensus 281 ~ 281 (288)
T KOG3049|consen 281 A 281 (288)
T ss_pred h
Confidence 3
No 4
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2.1e-61 Score=439.09 Aligned_cols=233 Identities=31% Similarity=0.630 Sum_probs=206.2
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI 137 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v 137 (302)
++++|+|+||||+..+.+|||++|+|++++ ++||||||.+|+.++||||+||.+||+|+||+|+|.|||+++|||.|.+
T Consensus 3 ~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~-~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~~~LAC~t~v 81 (239)
T PRK13552 3 RTLTFNIFRYNPQDPGSKPHMVTYQLEETP-GMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLACRTLT 81 (239)
T ss_pred ceEEEEEEeeCCCCCCCCcceEEEEecCCC-CCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCeEhhhhhccH
Confidence 379999999999754678999999999988 9999999999998899999999999999999999999999999999999
Q ss_pred cCCCCCceEEccCCCchhhhhhhhccchhhhhc-cccccccccCCCCC-CCccccCChhHHhhccccccCcccCcccCCC
Q 045926 138 DGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQY-KSIEPWLKTNMVPK-DGREYRQSPADRKKLDGLYECILCACCTTSC 215 (302)
Q Consensus 138 ~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~-~~~~~~l~~~~~~~-~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aC 215 (302)
.+..+++++||||++||+|||||||++.|++++ ++++||+....... ...+.++++++.+.++.+..||+||.|.++|
T Consensus 82 ~~~~~~~i~iePl~~fpVirDLvVD~~~~~~~~~~~v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saC 161 (239)
T PRK13552 82 SDYPDGVITLMPLPVFKLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAAC 161 (239)
T ss_pred hhcCCCcEEEEECCCCCcceeCccccHHHHHHHHHhhcCccccCCCCCCcccccCCCHHHHHHhhchhhccccchhHhhC
Confidence 986445899999999999999999999999999 89999997642221 1236789999999999999999999999999
Q ss_pred CCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHH-HhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhc
Q 045926 216 PSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQ-ALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLS 293 (302)
Q Consensus 216 P~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~-~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~ 293 (302)
|++.++ ..|+||+++++++|++.|+|++...+++. .+.++. ++|.|++||+|+++||++|++.++|.++|+.++.-
T Consensus 162 P~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~~~~~l~~~~-gi~~C~~C~~C~~vCPk~I~~~~~I~~lr~~~~~~ 238 (239)
T PRK13552 162 GTKQMR-EDFVGAVGLNRIARFELDPRDERTDEDFYELIGNDD-GVFGCMSLLGCEDNCPKDLPLQQQIAYLRRKMAAT 238 (239)
T ss_pred CCCccC-CCccChHHHHHHHHHhhCCCcchhHHHHHHHhccCC-CcCCCcCcCccchhCCCCCcHHHHHHHHHHHHHhc
Confidence 998754 47999999999999999999876556663 333333 89999999999999999999999999999887654
No 5
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.7e-60 Score=431.66 Aligned_cols=231 Identities=51% Similarity=1.014 Sum_probs=207.7
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI 137 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v 137 (302)
.+++|+|+||||+. +.+|||++|+|++.+.++||||+|.+|+ ++||+|+||.+||+|+||+|+|+|||+++|||+|.+
T Consensus 3 ~~~~~~i~R~~~~~-~~~~~~~~y~v~~~~~~~tvld~L~~ik-~~d~~l~fr~sCr~giCGsCa~~iNG~~~LaC~t~~ 80 (235)
T PRK12575 3 DTRILHIYRYDPDD-DAAPRMQRYEIAPRAEDRMLLDVLGRVK-AQDETLSYRRSCREGICGSDAMNINGRNGLACLTNM 80 (235)
T ss_pred ceEEEEEEeeCCCC-CCCceeEEEEecCCCCCCcHHHHHHHHH-hcCCCeeeeccCCCCCCCCCeeEECCeEcchhhCcH
Confidence 47899999999987 6799999999998763589999999999 789999999999999999999999999999999999
Q ss_pred cCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCC
Q 045926 138 DGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPS 217 (302)
Q Consensus 138 ~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~ 217 (302)
.+. ..+++||||++||+|||||||+++||+++++++||+.++...+ ..+.++++++.+.+.++..||+||.|.++||+
T Consensus 81 ~~~-~~~i~iePl~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~-~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP~ 158 (235)
T PRK12575 81 QAL-PREIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVPP-ERERLQTPQEREQLDGLYECILCACCSTACPS 158 (235)
T ss_pred hHc-CCCEEEeECCCCCccccceecCHHHHHHHHhccCccccCCCCc-cccccCCHHHHHHHHhhhhCcccccccccccC
Confidence 876 3579999999999999999999999999999999997654332 24688999999999999999999999999999
Q ss_pred cccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhc
Q 045926 218 YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLS 293 (302)
Q Consensus 218 ~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~ 293 (302)
+..++++|+||++++.+++++.|+++....++++.+.++. ++|.|++||+|+++||+||++.++|..+|+.+++.
T Consensus 159 ~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~-gl~~C~~C~~C~~vCPkgI~~~~~I~~lR~~~~~~ 233 (235)
T PRK12575 159 YWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLEDPY-RLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLARR 233 (235)
T ss_pred ccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCC-CcccccCcchhccccCCCCcHHHHHHHHHHHHHhc
Confidence 9877678999999999999999999876667776555444 89999999999999999999999999999887654
No 6
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=1.2e-59 Score=429.93 Aligned_cols=232 Identities=26% Similarity=0.528 Sum_probs=205.3
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccc-------cCCCcccccCCCCCccCccEEEECCEEe
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAE-------TDSSLSYRRSCREGICGSCAMNIGGTNT 130 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~-------~dptL~~~~~C~~g~CG~C~V~VnG~~~ 130 (302)
.+++|+|+|||| . +.+||||+|+|++++ ++||||||.+|+.+ +|++|+||.+||+|+||+|+|+|||++.
T Consensus 4 ~~~~~~i~R~~~-~-~~~~~~q~y~v~~~~-~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~ 80 (249)
T PRK08640 4 KTVRLIIKRQDG-P-DSKPYWEEFEIPYRP-NMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPR 80 (249)
T ss_pred cEEEEEEEeeCC-C-CCCceeEEEEecCCC-CCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccc
Confidence 479999999999 3 568999999999988 99999999999863 4788999999999999999999999999
Q ss_pred ccccccccCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCc
Q 045926 131 VACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCAC 210 (302)
Q Consensus 131 laC~t~v~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~ 210 (302)
|||+|.+.+. +++++||||++||||||||||+++|++++++++||+..+...+.+.+.++++++...++++..||+||.
T Consensus 81 LAC~t~v~~~-~~~i~iePl~~fpVikDLvVD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~CG~ 159 (249)
T PRK08640 81 QACTALIDQL-EQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRVKAWIPIDGTYDLGPGPRMPEEKRQWAYELSKCMTCGC 159 (249)
T ss_pred hhhhChHHHc-CCcEEEEECCCCCccccCcEEChHHHHHHHhhCCccccCCCCCCCcccCCCHHHHHHHhhhhhccCcCc
Confidence 9999999876 568999999999999999999999999999999999876543334567899999999999999999999
Q ss_pred ccCCCCCcccCCCCcccHHHHHHHHHHhccC-cchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHH
Q 045926 211 CTTSCPSYWWNPEEYLGPAALLHAYRWICDS-RDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK 289 (302)
Q Consensus 211 C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~-rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~ 289 (302)
|+++||++..+ ++|+||+++.+++++..++ ++....+|++.+.++. ++|.|++||+|+.+||+||++.+.|..+|+.
T Consensus 160 C~saCP~~~~~-~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~-g~~~C~~Cg~C~~vCPkgI~~~~~I~~lr~~ 237 (249)
T PRK08640 160 CLEACPNVNEK-SDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDG-GIADCGNAQNCVRVCPKGIPLTTSIAAMNRE 237 (249)
T ss_pred ccccCCCCccC-CCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCC-CeeCCcCcCcccccCCCCCCHHHHHHHHHHH
Confidence 99999999855 5799999999999998888 4433456776664444 8999999999999999999999999999999
Q ss_pred HhhcCC
Q 045926 290 HMLSQP 295 (302)
Q Consensus 290 l~~~~~ 295 (302)
+++++.
T Consensus 238 ~~~~g~ 243 (249)
T PRK08640 238 TTKQSF 243 (249)
T ss_pred HHHHHH
Confidence 887653
No 7
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=8.2e-57 Score=410.57 Aligned_cols=228 Identities=26% Similarity=0.507 Sum_probs=202.4
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID 138 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~ 138 (302)
+++|+|+||||+. +|||+|+|++++ ++||||||++|+.++||+|+|+.||+.|+||+|+|.|||+++|||+|++.
T Consensus 4 ~~~~~I~R~~~~~----~~~q~y~v~~~~-~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~laC~t~~~ 78 (251)
T PRK12386 4 TAKFRVWRGDASG----GELQDYTVEVNE-GEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMCMTRMS 78 (251)
T ss_pred EEEEEEEcCCCCC----CceEEEEEeCCC-CCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECccEeccHHhHHH
Confidence 5899999999654 499999999988 89999999999988999999999999999999999999999999999998
Q ss_pred CCCC-CceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCC
Q 045926 139 GDTS-KPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPS 217 (302)
Q Consensus 139 ~~~~-~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~ 217 (302)
+..+ ++++||||++||+|||||||++.||+++++++||+..+...+ .++++++++.+.+..+..||+||.|+++||+
T Consensus 79 ~~~~~~~itiepl~~fpVikDLvVD~~~~~~~l~~i~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~CI~CG~C~s~CPv 156 (251)
T PRK12386 79 TFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQP--GEYRMQQVDVERSQEFRKCIECFLCQNVCHV 156 (251)
T ss_pred HhCCCCeEEEccCCCCCccccceEEcHHHHHHHHhcCCcccCCCCCc--cccCCCHHHHHHHhchhhcccCCcccCcCCc
Confidence 7643 579999999999999999999999999999999997544332 4678999999999999999999999999999
Q ss_pred cccC---CCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHH-HHHHHHHHHhhc
Q 045926 218 YWWN---PEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPAD-AIHKMKTKHMLS 293 (302)
Q Consensus 218 ~~~~---~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~-~I~~lR~~l~~~ 293 (302)
+.++ +++|+||++++++++++.|+||. .+|+..+.... ++|.|++||+|+++||+||++.+ .|..+|+.+.+.
T Consensus 157 ~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~--~~rl~~~~~~~-gl~~C~~C~~C~~vCPkgI~~~~~~I~~lr~~~~~~ 233 (251)
T PRK12386 157 VRDHEENKPAFAGPRFLMRIAELEMHPLDT--ADRRAEAQEEH-GLGYCNITKCCTEVCPEHIKITDNALIPMKERVVDR 233 (251)
T ss_pred ccccCCCcccccCHHHHHHHHHhhcCccch--HHHHHHhhccc-CcccCcCCCCcCCcCCCCcChhHHHHHHHHHHHHHh
Confidence 9764 36799999999999999999986 35665544334 89999999999999999999985 899999887776
Q ss_pred CCc
Q 045926 294 QPM 296 (302)
Q Consensus 294 ~~~ 296 (302)
+..
T Consensus 234 ~~~ 236 (251)
T PRK12386 234 KYD 236 (251)
T ss_pred ccC
Confidence 543
No 8
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=4.8e-57 Score=411.83 Aligned_cols=233 Identities=33% Similarity=0.608 Sum_probs=207.5
Q ss_pred ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926 57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP 136 (302)
Q Consensus 57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~ 136 (302)
+++++|+|+||||+. ++.|||++|+|++++ |+||||||.+|+.++||+|+|+.+|++|+||+|+|.|||+++|||.|.
T Consensus 4 ~~~v~~~i~R~~~~~-~~~~~~~~~~v~~~~-~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~~laC~t~ 81 (244)
T PRK12385 4 MKNLKIEVLRYNPEV-DTEPHSQTYEVPYDE-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTF 81 (244)
T ss_pred CcEEEEEEEeeCCCC-CCCceeEEEEeeCCC-CCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccChhhHhhH
Confidence 457999999999988 678999999999988 999999999999889999999999999999999999999999999999
Q ss_pred ccCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCC
Q 045926 137 IDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCP 216 (302)
Q Consensus 137 v~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP 216 (302)
+.++ ++.++|+||++||+|||||||+++|+++++.++||+..+...+...+.++++++...+..+..||+||.|+++||
T Consensus 82 ~~~~-~~~~~iePl~~fpvikDLvvD~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP 160 (244)
T PRK12385 82 LRDY-TGGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTPDDGPNKQTPAQMAKYHQFSGCINCGLCYAACP 160 (244)
T ss_pred HHHc-CCCeEEeeCCCCCeeeeCeeecHHHHHHHHHhcCeeeCCCCCCCcccccCCHHHHHHHHHHHhcCcCccccCcCc
Confidence 9986 457999999999999999999999999999999999765433323356788999888889999999999999999
Q ss_pred CcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcC
Q 045926 217 SYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQ 294 (302)
Q Consensus 217 ~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~ 294 (302)
++..+ ++|+||+++++++|+..++|+....+++..+.... ++|.|++||+|+++||+||++.++|..+|+.+.+..
T Consensus 161 ~~~~~-~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~-gl~~C~~C~~C~~vCP~~I~~~~~I~~~r~~~~~~~ 236 (244)
T PRK12385 161 QFGLN-PEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQN-GVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESAKDF 236 (244)
T ss_pred CcccC-CCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccc-hhhhCcCcccccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99754 67999999999999988999876666665553333 899999999999999999999999999998776653
No 9
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=3.3e-56 Score=422.56 Aligned_cols=232 Identities=37% Similarity=0.715 Sum_probs=206.9
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID 138 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~ 138 (302)
.++|+|+||||+. +|||++|+|++++ |+||||||++|+.++||||||+.+|+.|+||+|+|+|||+++|||.|.+.
T Consensus 2 ~i~~~i~R~~~~~---~p~~~~~~v~~~~-~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~ 77 (329)
T PRK12577 2 EVLFKILRQKQNS---APYVQTYTLEVEP-GNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVG 77 (329)
T ss_pred eEEEEEEeeCCCC---CCeEEEEEEECCC-CChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchh
Confidence 4789999999964 8999999999988 99999999999988889999999999999999999999999999999997
Q ss_pred CC----------CCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCccc
Q 045926 139 GD----------TSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILC 208 (302)
Q Consensus 139 ~~----------~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~C 208 (302)
+. .+++++||||++||+|||||||+++||++++.++||+..........++++++++.+.++.+..||+|
T Consensus 78 ~~~~~~~~~~~~~~~~i~iePl~~~pvikDLvVD~~~~~~k~~~v~p~~~~~~~~~~~~e~~~~p~~~~~~~~~~~Ci~C 157 (329)
T PRK12577 78 SELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVSTAARQVPEREFLQTPEERSKLDQTGNCILC 157 (329)
T ss_pred hhhccccccccCCCCeEEEEECCCCCccccceeccHHHHHHHHhccCccccCCCCCCcccccCCHHHHHHHHHhhhCccc
Confidence 62 13689999999999999999999999999999999998654432345789999999999999999999
Q ss_pred CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHH
Q 045926 209 ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 209 G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~ 288 (302)
|.|+++||++..+ ++|+||++++.++|++.|+++....++++.+.+...++|.|++|++|+.+||++|++.+.|..+|+
T Consensus 158 G~C~s~CP~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~I~~~~~I~~lr~ 236 (329)
T PRK12577 158 GACYSECNAREVN-PEFVGPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQ 236 (329)
T ss_pred CcccccCCCCCcC-cCcCCHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCCCchHHHHHHHHH
Confidence 9999999999865 579999999999999999998766677765542333899999999999999999999999999999
Q ss_pred HHhhcCC
Q 045926 289 KHMLSQP 295 (302)
Q Consensus 289 ~l~~~~~ 295 (302)
.+.+++.
T Consensus 237 ~~~~~~~ 243 (329)
T PRK12577 237 EILARKD 243 (329)
T ss_pred HHHHhcC
Confidence 8877653
No 10
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=9.5e-56 Score=400.92 Aligned_cols=230 Identities=58% Similarity=1.088 Sum_probs=205.2
Q ss_pred EEEEEecCCCCCCCCCceeEEEEecC-CCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccC
Q 045926 61 EFRIYRWNPDRPDSKPFLQSYHVDLS-ECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDG 139 (302)
Q Consensus 61 ~~~I~r~~p~~~~~~~~~~~y~v~~~-~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~ 139 (302)
||+|+||||+. +++|||+.|+|+++ + |+||||||++++.++||+|+|+.+|+.|+||+|+|+|||+++|||+|++.+
T Consensus 1 ~~~v~r~~~~~-~~~~~~~~~~v~~~~~-~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~ 78 (232)
T PRK05950 1 TFKIYRYNPDV-DANPRMQTYEVDVDEC-GPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISD 78 (232)
T ss_pred CeEEEecCCCC-CCCceeEEEEeCCCCC-CCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhH
Confidence 58999999998 78999999999998 7 999999999998788999999999999999999999999999999999998
Q ss_pred CCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCcc
Q 045926 140 DTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 140 ~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~ 219 (302)
+.+++++||||++||+|||||||++.|+++++.++||+.++...+ ..+..+++++...+..+..||+||.|.++||++.
T Consensus 79 ~~~~~~tiepl~~~~vikDLvvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~ 157 (232)
T PRK05950 79 LKKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPPP-ARERLQSPEDREKLDGLYECILCACCSTSCPSFW 157 (232)
T ss_pred cCCCeEEEEECCCCCeeeeceeehHHHHHHHHhccCeecCCCCCC-chhccCCHHHHHHHHhHHhccccccccccCCccc
Confidence 756789999999999999999999999999999999997654322 2356788898888899999999999999999997
Q ss_pred cCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcC
Q 045926 220 WNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQ 294 (302)
Q Consensus 220 ~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~ 294 (302)
.++++|+||++++.+++++.++++....+++..+.++. ++|.|++||+|+.+||+||++.++|..||+.+++++
T Consensus 158 ~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~-~i~~C~~Cg~C~~~CP~gi~~~~~I~~lR~~~~~~~ 231 (232)
T PRK05950 158 WNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPF-GVFRCHTIMNCVEVCPKGLNPTKAIGEIKRMLLERR 231 (232)
T ss_pred cCCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhhccc-ccccCcCcCCcCccccCCCCHHHHHHHHHHHHHhhc
Confidence 66667999999999999988888765556665444333 789999999999999999999999999999987654
No 11
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2.7e-54 Score=400.64 Aligned_cols=231 Identities=34% Similarity=0.668 Sum_probs=203.5
Q ss_pred ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926 57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP 136 (302)
Q Consensus 57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~ 136 (302)
+++++|+||||||+. .|||++|+|++++ |+||||||++|+..+||+|+|+.+|+.|+||+|+|+|||+++|||.|.
T Consensus 6 ~~~~~~~i~R~~~~~---~~~~~~~~v~~~~-~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~laC~t~ 81 (279)
T PRK12576 6 EKEVIFKVKRYDPEK---GSWWQEYKVKVDR-FTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACKTL 81 (279)
T ss_pred CcEEEEEEEecCCCC---CCeEEEEEEecCC-CCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEeccccCc
Confidence 467999999999975 4999999999988 999999999999878899999999999999999999999999999999
Q ss_pred ccCC---CCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCC-CccccCChhHHhhccccccCcccCccc
Q 045926 137 IDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKD-GREYRQSPADRKKLDGLYECILCACCT 212 (302)
Q Consensus 137 v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~s~~~~~~~~~~~~CI~CG~C~ 212 (302)
+.+. .++.++||||++||+|||||||+++||+++++++||+.+...... ..+.++++++.+.+.+...||+||+|+
T Consensus 82 v~~~~~~~~~~~tiePl~~~~vikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~ 161 (279)
T PRK12576 82 VLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLCV 161 (279)
T ss_pred HHHhhcCCCCcEEEEECCCCceeecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcchhCcccCccc
Confidence 9874 356899999999999999999999999999999999976543221 236788999999999999999999999
Q ss_pred CCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhh
Q 045926 213 TSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHML 292 (302)
Q Consensus 213 ~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~ 292 (302)
++||++..+ ++|+||.+++++++++.++++....+++..+ .. ++|.|++||+|+.+||++|++.++|..+|+....
T Consensus 162 ~~CP~~~~~-~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~--~~-~i~~C~~Cg~C~~~CP~~I~~~~~I~~lR~~~~~ 237 (279)
T PRK12576 162 SACPVVAID-PEFLGPAAHAKGYRFLADPRDTITEERMKIL--ID-SSWRCTYCYSCSNVCPRDIEPVTAIKKTRSFTRV 237 (279)
T ss_pred ccCCCcccc-CCcCCHHHHHHHHHHhcCccccchHHHHHHH--cC-cCCcccCcccchhhCCCCCcHHHHHHHHHHHHHh
Confidence 999999754 5799999999999998898876655666433 22 7899999999999999999999999999988654
Q ss_pred cCC
Q 045926 293 SQP 295 (302)
Q Consensus 293 ~~~ 295 (302)
.++
T Consensus 238 ~~~ 240 (279)
T PRK12576 238 YKP 240 (279)
T ss_pred cCC
Confidence 443
No 12
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=100.00 E-value=2e-53 Score=382.81 Aligned_cols=220 Identities=51% Similarity=0.982 Sum_probs=193.1
Q ss_pred EEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccCCCCC
Q 045926 64 IYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSK 143 (302)
Q Consensus 64 I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~~ 143 (302)
|+||||+. +++|||++|+|++++ |+||||||++++.++||+|+|+.+|+.|+||+|+|+|||++++||+|++.++..+
T Consensus 1 i~R~~~~~-~~~~~~~~~~v~~~~-~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~ 78 (220)
T TIGR00384 1 VLRFNPDV-DEKPHLQSYEVPADE-GMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQP 78 (220)
T ss_pred CcCcCCCC-CCCceeEEEEEeCCC-CCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCC
Confidence 78999997 679999999999988 9999999999997889999999999999999999999999999999999985234
Q ss_pred ceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCcccCCC
Q 045926 144 PTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPE 223 (302)
Q Consensus 144 ~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~ 223 (302)
.++||||++||+|||||||++.|+++++.++||+..........+.++++++...+.++.+||+||.|+++||++..+ .
T Consensus 79 ~~~iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~-~ 157 (220)
T TIGR00384 79 VMKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPEPEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWN-P 157 (220)
T ss_pred cEEEeeCCCCceeeeeeechHHHHHHHHhcCCeecCCCCCCccccccCCHHHHHHHhhhhhccccccccccCCCCccC-C
Confidence 589999999999999999999999999999999976542221235678888888889999999999999999999754 4
Q ss_pred CcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHH
Q 045926 224 EYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287 (302)
Q Consensus 224 ~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR 287 (302)
+|+||++++.+++++.++++....++++.+.+.. ++|.|++||+|+++||++|++.++|..||
T Consensus 158 ~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~-~~~~C~~Cg~C~~~CP~~I~~~~~I~~lR 220 (220)
T TIGR00384 158 EFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKN-GVWRCTTCMNCSEVCPKGVNPARAIEKLK 220 (220)
T ss_pred CCcCHHHHHHHHHHhcCCCccchHHHHHHhhccC-CCccCccccccccccCCCCCHHHHHHHhC
Confidence 6999999999999988888755455655443333 89999999999999999999999999875
No 13
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=100.00 E-value=9e-52 Score=377.63 Aligned_cols=225 Identities=24% Similarity=0.466 Sum_probs=179.8
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEe-cCCCchhHHHHHHHccccc----CCCcccccCCCCCccCccEEEECCEE----
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVD-LSECGPMVLDALQKIKAET----DSSLSYRRSCREGICGSCAMNIGGTN---- 129 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~-~~~~g~tvLdal~~i~~~~----dptL~~~~~C~~g~CG~C~V~VnG~~---- 129 (302)
.++|+|+||||. +.+||||+|+|+ +++ ++||||||.+|+.++ +++|+||.+||+|+||||+|+|||++
T Consensus 2 ~~~~~i~R~~~~--~~~~~~q~y~v~~~~~-~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~ 78 (250)
T PRK07570 2 KLTLKIWRQKGP--DDKGKFETYEVDDISP-DMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPD 78 (250)
T ss_pred eEEEEEEecCCC--CCCceeEEEEecCCCC-CCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCC
Confidence 478999999963 468999999999 777 899999999997543 45699999999999999999999999
Q ss_pred --eccccccccCCC-CCceEEccCC--CchhhhhhhhccchhhhhccccccccccCC-CCCCCccccCChhHHhhccccc
Q 045926 130 --TVACLKPIDGDT-SKPTIITPLP--HMFVIKDLVVDLTNFYQQYKSIEPWLKTNM-VPKDGREYRQSPADRKKLDGLY 203 (302)
Q Consensus 130 --~laC~t~v~~~~-~~~~~Iepl~--~~~vikDLvvD~~~~~~~~~~~~~~l~~~~-~~~~~~e~~~s~~~~~~~~~~~ 203 (302)
+|||+|.+.+.. +++++|+||+ +||||||||||++.| +++++++||+.+.. ..+++.+.++++++.+.+..+.
T Consensus 79 ~~~LAC~t~~~~~~~~~~i~iePl~~~~fpvikDLvVD~~~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (250)
T PRK07570 79 RGTTTCQLHMRSFKDGDTITIEPWRAAAFPVIKDLVVDRSAL-DRIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAA 157 (250)
T ss_pred cccchhhhhhhhcCCCCeEEEEECCCCCCCeeeeceeecHHH-HHHHhcCCeEecCCCCCCCccccCCCHHHHHhhhCcc
Confidence 899999998753 4689999999 999999999999996 89999999998653 2233346789999999999999
Q ss_pred cCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchh---HHHHHHHhhhcccccccCcccccccccCCCCCCHH
Q 045926 204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDEL---TEERLQALTEDERKLYRCRAIKNCTATCPKGLDPA 280 (302)
Q Consensus 204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~---~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~ 280 (302)
.||+||.|+++||++. .+.|+||++ ..+ ++....++.. ..+++..+ +.. ++|.|++||.|+++||++|++.
T Consensus 158 ~CI~CG~C~saCP~~~--~~~f~Gp~~-~~~-~l~p~~~~~r~~~~~~~~~~~-~~~-gv~~C~~Cg~Cs~VCPk~I~~~ 231 (250)
T PRK07570 158 ACIGCGACVAACPNGS--AMLFTGAKV-SHL-ALLPQGQPERARRVRAMVAQM-DEE-GFGNCTNTGECEAVCPKGISLE 231 (250)
T ss_pred ccCCCcccccccCCcc--cccccchhh-hhh-hhCcccchhHHHHHHHHHHHH-hcc-CcccCcccCccccccCCCCCHH
Confidence 9999999999999986 347999875 333 3322112211 11122222 223 7899999999999999999985
Q ss_pred HHHHHHHHHHhhcC
Q 045926 281 DAIHKMKTKHMLSQ 294 (302)
Q Consensus 281 ~~I~~lR~~l~~~~ 294 (302)
.|..+++.+...+
T Consensus 232 -~I~~l~r~~~~~~ 244 (250)
T PRK07570 232 -NIARMNREYLRAS 244 (250)
T ss_pred -HHHHHHHHHHHHH
Confidence 7777766555443
No 14
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=342.82 Aligned_cols=218 Identities=36% Similarity=0.689 Sum_probs=193.6
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI 137 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v 137 (302)
.++||+||||||+. + .|||++|+|++++ |+||||||++++.+++|+|+|+.+|+.|+||+|.|+|||+.+|||+|.+
T Consensus 2 ~~~~~~i~r~~~~~-~-~~~~~~~~v~~~~-~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~ 78 (486)
T PRK06259 2 KMITITVKRFDPEK-D-EPHFESYEVPVKE-GMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEPVLACKTEV 78 (486)
T ss_pred ceEEEEEEecCCCC-C-CceeEEEEEeCCC-CChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeEecccccCC
Confidence 57999999999998 4 7999999999988 9999999999987789999999999999999999999999999999999
Q ss_pred cCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCC
Q 045926 138 DGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPS 217 (302)
Q Consensus 138 ~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~ 217 (302)
.+ .++|+|++ +|+++|||+|++.|+.++..+++|+.++. +.++++++...+.++..||+||.|.++||+
T Consensus 79 ~~----~~~i~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~ 147 (486)
T PRK06259 79 ED----GMIIEPLD-FPVIKDLIVDREPYYKKLKSLRNYLQRKN------EKITYPEDIEDIKKLRGCIECLSCVSTCPA 147 (486)
T ss_pred CC----CCEEEecC-CcchhccccccHHHHHHHHhhcCCCCCCc------cCCCCHHHHHHHhCchhcccCccccccCCC
Confidence 86 48999999 99999999999999999999999997643 245788999999999999999999999999
Q ss_pred cccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCH-HHHHHHHHHHHhhcCC
Q 045926 218 YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDP-ADAIHKMKTKHMLSQP 295 (302)
Q Consensus 218 ~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~-~~~I~~lR~~l~~~~~ 295 (302)
+.. ++|+||+++..++++..++++.. +++.... .. ++|.|++||+|+.+||+||++ .++|..+|+.+.+.+.
T Consensus 148 ~~~--~~~~gp~~~~~~~~~~~~~~~~~--~~~~~~~-~~-~~~~C~~C~~C~~~CP~gi~~~~~~i~~~R~~~~~~g~ 220 (486)
T PRK06259 148 RKV--SDYPGPTFMRQLARFAFDPRDEG--DREKEAF-DE-GLYNCTTCGKCVEVCPKEIDIPGKAIEKLRALAFKKGL 220 (486)
T ss_pred Ccc--ccCcCHHHHHHHHHHhhCCcchh--hHHHHHh-cC-CCcCCCCcCcccCcCCCCCCchHHHHHHHHHHHHHccC
Confidence 985 57999999999998877777653 2333222 22 789999999999999999998 9999999998877664
No 15
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=100.00 E-value=5.9e-37 Score=246.59 Aligned_cols=107 Identities=46% Similarity=0.878 Sum_probs=92.6
Q ss_pred EEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccCC
Q 045926 61 EFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGD 140 (302)
Q Consensus 61 ~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~ 140 (302)
||+|+||||+.+..++||++|+|++.+ ++||||||.+|+.++||+|+||.+|++|+||+|+|+|||+++|||.|.+.+.
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~-~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~ 79 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEP-GMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDL 79 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGS-TSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGC
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCC-CCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhc
Confidence 699999999886669999999999998 9999999999999999999999999999999999999999999999999986
Q ss_pred CC---CceEEccCCCchhhhhhhhccchhhh
Q 045926 141 TS---KPTIITPLPHMFVIKDLVVDLTNFYQ 168 (302)
Q Consensus 141 ~~---~~~~Iepl~~~~vikDLvvD~~~~~~ 168 (302)
.. +.++||||++||+|||||||++.||+
T Consensus 80 ~~~~~~~i~IePL~~fpVirDLvVD~~~f~e 110 (110)
T PF13085_consen 80 IEKFGNVITIEPLPNFPVIRDLVVDMSPFFE 110 (110)
T ss_dssp TTSETBEEEEEESTTSBEEETTEEETHHHHH
T ss_pred cCCCcceEEEEECCCCCcceeCceeChHHcC
Confidence 43 36999999999999999999999984
No 16
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.88 E-value=3.1e-24 Score=215.02 Aligned_cols=192 Identities=19% Similarity=0.296 Sum_probs=129.7
Q ss_pred cceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCC-CCCccCccEEEECCEEecccc
Q 045926 56 KKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSC-REGICGSCAMNIGGTNTVACL 134 (302)
Q Consensus 56 ~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C-~~g~CG~C~V~VnG~~~laC~ 134 (302)
..++++++|.. -++++++ |+|||+|+++.+ +++|+|||+.+- +.+.|++|.|+|||+.+.||+
T Consensus 2 ~~~~i~vtidg--------------~~~~v~~-G~tiL~a~~~~g-I~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCs 65 (978)
T COG3383 2 AEKMITVTIDG--------------RSIEVEE-GTTILRAANRNG-IEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCS 65 (978)
T ss_pred CceeEEEEECC--------------eEEecCC-ChHHHHHHHhcC-CcccceeccCCCCcccccceEEEEecCceecccc
Confidence 45679999998 3455566 999999999988 579999999985 579999999999999999999
Q ss_pred ccccCC---CCCceEEccCCCchhhhhhhhccchhhh----------hcccccccc-ccCCCCC-CCc--cccCChhHHh
Q 045926 135 KPIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ----------QYKSIEPWL-KTNMVPK-DGR--EYRQSPADRK 197 (302)
Q Consensus 135 t~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~----------~~~~~~~~l-~~~~~~~-~~~--e~~~s~~~~~ 197 (302)
|.++++ .+++.+|..++ ...-|+++..|++++ .++.+.-.+ ..+.+++ +++ .+..+...+.
T Consensus 66 T~v~dGm~v~t~s~rvk~~r--~~~md~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pf 143 (978)
T COG3383 66 TPVEDGMVVRTNSERVKEAR--REAMDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPF 143 (978)
T ss_pred ccccCCcEEecccHHHHHHH--HHHHHHHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCccccCCCCCcccCCCe
Confidence 999983 23333343332 245566666677664 333332233 2233332 223 3444555577
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhh-hcccccccCcccccccccCCCC
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALT-EDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~-~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
..++.++||+||+|+.+|...+.+. ++-..|+. .++|. -+.. .+. ....|++||.|++|||++
T Consensus 144 y~ydp~qCIlCgRCVeaCqevqv~e-------aL~i~w~~-~~pRV-------~wd~~~~i-~~SSCVsCG~CvtVCP~n 207 (978)
T COG3383 144 YIYDPNQCILCGRCVEACQEVQVNE-------ALTIDWRG-EDPRV-------IWDNDVPI-NESSCVSCGACVTVCPVN 207 (978)
T ss_pred EEecchheeehhHHHHHHHhhhcee-------EEEeeccc-CCcce-------ecCCCCcc-ccccccccCccceecchh
Confidence 8889999999999999999766321 11122221 23332 1111 123 568999999999999998
Q ss_pred CCHHH
Q 045926 277 LDPAD 281 (302)
Q Consensus 277 I~~~~ 281 (302)
+-...
T Consensus 208 ALmek 212 (978)
T COG3383 208 ALMEK 212 (978)
T ss_pred hhhhh
Confidence 86444
No 17
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.86 E-value=1.5e-22 Score=210.74 Aligned_cols=197 Identities=16% Similarity=0.215 Sum_probs=118.8
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECCEEeccccccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGGTNTVACLKPI 137 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG~~~laC~t~v 137 (302)
|++|+|++ .+|++.+ |+|||+|++.+| +++|+|||+.+|. .|.||.|.|+|||++++||.|++
T Consensus 1 mv~i~IdG--------------~~v~~~~-G~til~aa~~~g-i~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v 64 (819)
T PRK08493 1 MITITING--------------KECEAQE-GEYILNVARRNG-IFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKA 64 (819)
T ss_pred CeEEEECC--------------EEEEeCC-CCHHHHHHHHcC-CccccccccCCCCCCccccceEEEECCEEeccccCCC
Confidence 57899988 3455567 999999999998 5699999999997 69999999999999999999999
Q ss_pred cCC---CCCceEEccCCCchhhhhhhhccchhhh---------hcccccccccc-CCCCCCCccccCChhHHhhcccccc
Q 045926 138 DGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWLKT-NMVPKDGREYRQSPADRKKLDGLYE 204 (302)
Q Consensus 138 ~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l~~-~~~~~~~~e~~~s~~~~~~~~~~~~ 204 (302)
.++ .|++..+...| ..+-.|++..+++.+ .+|.+.-++.. ..+++.....+.........++.++
T Consensus 65 ~dGM~V~T~s~~v~~~R--k~vle~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~~~~~~~~~~~~~I~~D~~r 142 (819)
T PRK08493 65 KEGMNILTNTPNLMDER--NAIMQTYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAIKDTHKPHKHWGKINYDPSL 142 (819)
T ss_pred CCCCEEEecCHHHHHHH--HHHHHHHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCccccccccccCCCcEEechhh
Confidence 873 22222333222 244444555555543 34444333321 1222111111111122456789999
Q ss_pred CcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcch-----hHHHHHH--------HhhhcccccccCcccccccc
Q 045926 205 CILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDE-----LTEERLQ--------ALTEDERKLYRCRAIKNCTA 271 (302)
Q Consensus 205 CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~-----~~~~rl~--------~~~~~~~~~~~C~~Cg~C~~ 271 (302)
||+||+|+.+|+..+ |..++-...|. .+.+.. ..++.+. .+....+....|++||+|++
T Consensus 143 CI~C~RCVr~C~ev~-------g~~al~~~~RG-~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~ 214 (819)
T PRK08493 143 CIVCERCVTVCKDKI-------GESALKTVPRG-LDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIA 214 (819)
T ss_pred cccccHHHhhCcccc-------cchhhhhccCC-cccccccccccccccchhhhhhcccceecccCCCcccccccCcHHH
Confidence 999999999999765 22222222111 110000 0000000 00000112468999999999
Q ss_pred cCCCCCCHHH
Q 045926 272 TCPKGLDPAD 281 (302)
Q Consensus 272 vCP~gI~~~~ 281 (302)
+||+|+-...
T Consensus 215 VCPvGAL~~k 224 (819)
T PRK08493 215 VCPVGALSSS 224 (819)
T ss_pred hCCCCccccC
Confidence 9999997543
No 18
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.83 E-value=4.2e-22 Score=183.51 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=100.3
Q ss_pred ccceeEEEEEEecCCCCCCCCCceeEEEEec-CCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECCE--Ee
Q 045926 55 VKKVMKEFRIYRWNPDRPDSKPFLQSYHVDL-SECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGGT--NT 130 (302)
Q Consensus 55 ~~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~-~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG~--~~ 130 (302)
+.+-.++|+|+. .+|++ ++ |+|||||++++| +++|+|||+.... .|.|+.|.|+|+|. .+
T Consensus 64 ~~~~~~~I~IDG--------------k~VeV~~~-G~TILeAAr~~G-I~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv 127 (297)
T PTZ00305 64 EHKPRAIMFVNK--------------RPVEIIPQ-EENLLEVLEREG-IRVPKFCYHPILSVAGNCRMCLVQVDGTQNLV 127 (297)
T ss_pred ccCCceEEEECC--------------EEEEecCC-CChHHHHHHHcC-CCcCccccCCCCCCCCccceeEEEECCCcCcc
Confidence 334468899988 55666 56 999999999998 5799999999874 79999999999996 56
Q ss_pred ccccccccCC---CCCceEEccCCCchhhhhhhhccchhhh---------hccccccccccC-CCCCCCc-cccCChhHH
Q 045926 131 VACLKPIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWLKTN-MVPKDGR-EYRQSPADR 196 (302)
Q Consensus 131 laC~t~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l~~~-~~~~~~~-e~~~s~~~~ 196 (302)
.||.|+|.++ .|++.+|..+| +.+-.|++..++..+ +||.+..++... .+++..+ .......++
T Consensus 128 ~AC~tpV~eGM~V~T~Se~v~~~R--k~vLElLLs~Hp~DC~~C~k~G~CeLQdla~~~Gv~~~Rf~~~~~~~~~~~~~p 205 (297)
T PTZ00305 128 VSCATVALPGMSIITDSRLVRDAR--EGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDP 205 (297)
T ss_pred cccCCcCCCCCEEEeCCHHHHHHH--HHHHHHHHhcCCCcCCcccCcCCcHHHHHHHHhCCCCccCCcccccccccCCCC
Confidence 7999999983 23444444333 355556666665542 455554444222 2222111 111112234
Q ss_pred hhccccccCcccCcccCCCCCcc
Q 045926 197 KKLDGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 197 ~~~~~~~~CI~CG~C~~aCP~~~ 219 (302)
....++++||+||+|+.+|...+
T Consensus 206 ~i~~D~nKCIlCgRCVRaC~EVq 228 (297)
T PTZ00305 206 QTRVVLNRCIHCTRCVRFLNEHA 228 (297)
T ss_pred ceeecCCcCcCccHHHHHHHHhh
Confidence 55677899999999999999876
No 19
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=99.80 E-value=1.2e-20 Score=192.47 Aligned_cols=189 Identities=14% Similarity=0.282 Sum_probs=116.5
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECC--EEeccccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGG--TNTVACLK 135 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG--~~~laC~t 135 (302)
|+||.|++ -+|++++ |.|||+|++++| ++||+|||+..|. .|.||.|+|+|+| +++.||.|
T Consensus 1 m~tI~IDG--------------~ei~v~~-g~tvLqAa~~aG-i~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~t 64 (693)
T COG1034 1 MVTITIDG--------------KEIEVPE-GETVLQAAREAG-IDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCAT 64 (693)
T ss_pred CeEEEECC--------------EEEecCC-CcHHHHHHHHcC-CCCCcccccCCCCcccceeEEEEEecCCCcccccccc
Confidence 68899998 5566777 999999999999 5699999999987 5999999999999 88999999
Q ss_pred cccCC---CCCceEEccCCCchhhhhhhhccchhhh---------hcccccccc-ccCCCCCCCccccCChhHH-hhccc
Q 045926 136 PIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWL-KTNMVPKDGREYRQSPADR-KKLDG 201 (302)
Q Consensus 136 ~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l-~~~~~~~~~~e~~~s~~~~-~~~~~ 201 (302)
++.++ .+++..+.-.| .-+-.+++..|++.+ .||++.--+ ...+++...+......+.. ....+
T Consensus 65 pv~dGM~I~T~s~~vk~~R--~~vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~~~~~~gp~v~~d 142 (693)
T COG1034 65 PVTDGMVISTNSEEVKKAR--EGVMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTHRDKDLGPLVKYD 142 (693)
T ss_pred ccCCCeEEecCCHHHHHHH--HHHHHHHHhcCCCCCCccCCCCCchhHHHHHHhCCCcccccccccccccccccchhhcc
Confidence 99873 12222222222 123344455666654 444332111 1122222212211112222 23388
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHH
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPAD 281 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~ 281 (302)
+++||+|++|+++|-.+. |-.. +.++.++... .+.... +..+.=.+||+|+++||+|+-...
T Consensus 143 m~RCI~C~RCVR~c~eia-------G~~~----l~~~~rg~~~----~i~t~~---~~~l~se~cGncv~vCPvGALt~K 204 (693)
T COG1034 143 MNRCILCTRCVRFCKEIA-------GTHE----LGVIKRGENS----EIGTYL---DQPLESELCGNCVDVCPVGALTSK 204 (693)
T ss_pred cccceechhhHHhhhhhc-------Cccc----cceeecCCCc----eeeccc---ccccccccccceeeeccccccccC
Confidence 999999999999998765 2111 1111221111 011111 122233899999999999997555
Q ss_pred HH
Q 045926 282 AI 283 (302)
Q Consensus 282 ~I 283 (302)
-.
T Consensus 205 ~~ 206 (693)
T COG1034 205 PF 206 (693)
T ss_pred hH
Confidence 44
No 20
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=99.78 E-value=1.8e-20 Score=193.48 Aligned_cols=186 Identities=12% Similarity=0.195 Sum_probs=117.5
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECCE---Eecccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGGT---NTVACL 134 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG~---~~laC~ 134 (302)
|++|+|+. .+|++++ |+|||+|++++| +++|+|||+..-. .|.|+.|.|+|+|. ++.||.
T Consensus 1 m~~~~Idg--------------~~v~v~~-g~til~a~~~~g-i~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~ 64 (687)
T PRK09130 1 MVKLKVDG--------------KEIEVPD-GYTLLQACEAAG-AEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCA 64 (687)
T ss_pred CeEEEECC--------------EEEEeCC-CCHHHHHHHHcC-CCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccC
Confidence 58899988 4566667 999999999998 5699999999864 79999999999985 677999
Q ss_pred ccccCC---CCCceEEccCCCchhhhhhhhccchhhh---------hccccccccc-cCCCCCCCcc-ccCChhHHhhcc
Q 045926 135 KPIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWLK-TNMVPKDGRE-YRQSPADRKKLD 200 (302)
Q Consensus 135 t~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l~-~~~~~~~~~e-~~~s~~~~~~~~ 200 (302)
|+|.++ .|++..|...| ..+-.+++..|++.+ .+|++.-.+. ...++...+. .......+....
T Consensus 65 ~~v~~gm~v~T~s~~v~~~r--~~~le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~~~~~~~~p~i~~ 142 (687)
T PRK09130 65 MPVGEGMVIFTNTPMVKKAR--EGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRAVEDKYMGPLVKT 142 (687)
T ss_pred CCCCCCCEEEeCCHHHHHHH--HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCccccccCcCCCCCcEEE
Confidence 999983 23344444333 244555566666643 3444332222 1223322111 111111234567
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHH
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPA 280 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~ 280 (302)
++++||+||+|+.+|-.++.. .++-. ...+.+ .++... .+....|..||+|+++||+|+-..
T Consensus 143 ~~~rCI~C~rCvr~c~ev~g~-------~~l~~----~~rg~~----~~i~~~---~~~~~~~~~~G~cv~~CPvgAl~~ 204 (687)
T PRK09130 143 VMTRCIHCTRCVRFATEVAGV-------PELGA----IGRGED----MEITTY---LEQALTSELSGNVIDLCPVGALTS 204 (687)
T ss_pred ecccCCcccHHHHHHHhhcCC-------ceEEe----eecCCC----CEEccC---CCCCccccccccHHhhCCCccccc
Confidence 889999999999999876521 11111 111111 011111 113456889999999999999643
No 21
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.77 E-value=2.8e-20 Score=169.04 Aligned_cols=188 Identities=17% Similarity=0.248 Sum_probs=110.8
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CCCCccCccEEEECCE--Eecccc
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CREGICGSCAMNIGGT--NTVACL 134 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~~g~CG~C~V~VnG~--~~laC~ 134 (302)
.+|+|.|+. ..|++.+ |.|||+|+++.| ..+|++|+..+ |..|.||.|.|+|||. .++||.
T Consensus 2 ~~v~i~idg--------------~~~~~~~-g~til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~ 65 (234)
T PRK07569 2 SVKTLTIDD--------------QLVSARE-GETLLEAAREAG-IPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACV 65 (234)
T ss_pred ceEEEEECC--------------EEEEeCC-CCHHHHHHHHcC-CCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcC
Confidence 468888866 3355667 999999999998 56999999876 6789999999999996 457999
Q ss_pred ccccCC---CCCceEEccCCCchhhhhhhhccchhhh---------hccccccccccC-CCCCC-CccccCChhHHhhcc
Q 045926 135 KPIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWLKTN-MVPKD-GREYRQSPADRKKLD 200 (302)
Q Consensus 135 t~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l~~~-~~~~~-~~e~~~s~~~~~~~~ 200 (302)
|+|.++ .+++..+... ...+.+|+.+.+++.+ .++++.-++... ..++. ..+...+........
T Consensus 66 t~v~~Gm~v~t~~~~~~~~--rk~~l~~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~d~s~~~i~~ 143 (234)
T PRK07569 66 TPVAEGMVVQTNTPRLQEY--RRMIVELLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFPYLFPRRPVDISHPRFGI 143 (234)
T ss_pred CCCCCCCEEEECCHHHHHH--HHHHHHHHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccCcccCCcccccCCCcEEe
Confidence 999973 1122222211 2345566666655532 344443332211 11110 001111112345566
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHH-HhhhcccccccCcccccccccCCCCCC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQ-ALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~-~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
+.++||.||+|+.+||..... ..+ . ..++... .++. ...........|++||.|+.+||+|+-
T Consensus 144 d~~kCi~Cg~Cv~aC~~i~~~-------~~~----~--~~~~g~~--~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL 207 (234)
T PRK07569 144 DHNRCVLCTRCVRVCDEIEGA-------HTW----D--VAGRGAK--SRVITDLNQPWGTSETCTSCGKCVQACPTGAI 207 (234)
T ss_pred ehhhCcCccHHHHHHHHhcCC-------cee----e--ecccCCc--ceEeecCCccccccccccchHHHHHhCCCCcE
Confidence 789999999999999953210 000 0 0000000 0000 000011023489999999999999885
No 22
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=99.76 E-value=7.2e-20 Score=192.03 Aligned_cols=188 Identities=13% Similarity=0.177 Sum_probs=116.0
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CCCCccCccEEEECCEE--ecccc
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CREGICGSCAMNIGGTN--TVACL 134 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~~g~CG~C~V~VnG~~--~laC~ 134 (302)
.|++|+|+. .+|++++ |+|||+|++.++ +++|+|||+.. +..|.|+.|.|+|||.. +.||.
T Consensus 3 ~~v~~~idg--------------~~~~~~~-g~til~aa~~~g-i~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~ 66 (797)
T PRK07860 3 DLVTLTIDG--------------VEVSVPK-GTLVIRAAELLG-IQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCT 66 (797)
T ss_pred ceEEEEECC--------------EEEEeCC-CChHHHHHHHcC-CCCCeecCCCCCCCCcccCccEEEECCCcccccccC
Confidence 579999988 4556667 999999999998 57999999987 56899999999999964 56999
Q ss_pred ccccCC---CCC--ceEEccCCCchhhhhhhhccchhhh---------hcccccccccc-CCCCCCCcc-ccCC-hhHHh
Q 045926 135 KPIDGD---TSK--PTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWLKT-NMVPKDGRE-YRQS-PADRK 197 (302)
Q Consensus 135 t~v~~~---~~~--~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l~~-~~~~~~~~e-~~~s-~~~~~ 197 (302)
|++.++ .|+ +.++.-.| ..+-.|++..|++.+ ++|++.-.+.. ..++...+. .... .....
T Consensus 67 t~v~~gm~V~t~~~s~~v~~~r--~~~le~ll~~hp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 144 (797)
T PRK07860 67 TTVTDGMVVKTQLTSPVADKAQ--HGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISTQ 144 (797)
T ss_pred CCCCCCcEEEeCCCCHHHHHHH--HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHHhCCCCccCccccccCCCCCCCCcc
Confidence 999973 111 22222222 344555555555543 44444322211 122211111 1100 11234
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
+..+.++||+|++|+.+|-.++.. .++-. ...+.+. ++... .+..+.|.+||+|+++||+|+
T Consensus 145 i~~d~~rCI~C~rCvr~c~ev~g~-------~~l~~----~~rg~~~----~i~~~---~~~~~~~~~cG~cv~vCP~GA 206 (797)
T PRK07860 145 VLLDRERCVLCARCTRFSDQIAGD-------PFIDL----QERGALQ----QVGIY---EGEPFQSYFSGNTVQICPVGA 206 (797)
T ss_pred eeecccccccCcHHHHHHHhhcCC-------cEEEe----eecCCCC----EEecC---CCCCcCccccCCchhhCCccc
Confidence 667899999999999999876521 11111 1111110 11111 113457899999999999999
Q ss_pred CHHH
Q 045926 278 DPAD 281 (302)
Q Consensus 278 ~~~~ 281 (302)
-...
T Consensus 207 l~~k 210 (797)
T PRK07860 207 LTGA 210 (797)
T ss_pred cccc
Confidence 6543
No 23
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=99.75 E-value=1.1e-19 Score=190.20 Aligned_cols=187 Identities=16% Similarity=0.212 Sum_probs=116.4
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECCEE--eccccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGGTN--TVACLK 135 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG~~--~laC~t 135 (302)
|++|+|+. ++ |++.+ |+|||+|+++++ +++|+|||+.... .|.|+.|.|+|||.. +.||.|
T Consensus 1 m~~~~idg------------~~--~~~~~-g~~il~a~~~~g-~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~ 64 (776)
T PRK09129 1 MVEIEIDG------------KK--VEVPE-GSMVIEAADKAG-IYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACAT 64 (776)
T ss_pred CeEEEECC------------EE--EEeCC-CCHHHHHHHHcC-CCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCC
Confidence 58899988 44 45556 999999999998 5699999998754 799999999999964 679999
Q ss_pred cccCC---CCCceEEccCCCchhhhhhhhccchhh---------hhcccccccccc-CCCCCCCcc-ccCChhHHhhccc
Q 045926 136 PIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFY---------QQYKSIEPWLKT-NMVPKDGRE-YRQSPADRKKLDG 201 (302)
Q Consensus 136 ~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~---------~~~~~~~~~l~~-~~~~~~~~e-~~~s~~~~~~~~~ 201 (302)
++.++ .|++..+.-.| ..+-.|++..|+.. ++++++.-.+.. ..++...+. +........+..+
T Consensus 65 ~~~~gm~v~t~~~~~~~~r--~~~l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~~~~~p~i~~d 142 (776)
T PRK09129 65 PVTDGMKVFTRSEKALKAQ--KSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTE 142 (776)
T ss_pred CCCCCCEEEcCCHHHHHHH--HHHHHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCccccccccCCccCCCcceeec
Confidence 99973 22222333222 23444555555543 355555433322 222221111 1112223456678
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHH
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPAD 281 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~ 281 (302)
.++||+||+|+.+|-.++ |..++-...| +.+ .++.... +....|..||+|+++||+|+-...
T Consensus 143 ~~rCi~C~rCvr~c~ev~-------g~~~l~~~~r----g~~----~~i~~~~---~~~~~~~~cg~cv~~CP~GAl~~k 204 (776)
T PRK09129 143 MTRCIHCTRCVRFGQEIA-------GVMELGMMGR----GEH----SEITTYV---GKTVDSELSGNMIDLCPVGALTSK 204 (776)
T ss_pred ccccccCcHHHHHHHHhc-------CCceeeeecc----CCC----CEEcCCC---CCCccCcccCCchhhCCccccccc
Confidence 999999999999998765 2112211111 111 1111111 134468899999999999996544
No 24
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=99.75 E-value=1.3e-19 Score=185.00 Aligned_cols=179 Identities=13% Similarity=0.187 Sum_probs=111.5
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECCE---EeccccccccCC---CCCceEEccCCCc
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGGT---NTVACLKPIDGD---TSKPTIITPLPHM 153 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG~---~~laC~t~v~~~---~~~~~~Iepl~~~ 153 (302)
.+|++++ |+|||+|+++.+ +++|+|||+..-. .|.|+.|.|+|+|. .+.||.|+|.++ .|++..|.-.|
T Consensus 6 ~~~~~~~-g~~il~a~~~~g-i~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~~~~~~~~r-- 81 (603)
T TIGR01973 6 KELEVPK-GTTVLQACLSAG-IEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTNSEKVKKAR-- 81 (603)
T ss_pred EEEEeCC-CCHHHHHHHHcC-CCccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHHH--
Confidence 4566667 999999999998 5799999999864 79999999999995 678999999983 22333333332
Q ss_pred hhhhhhhhccchhhh---------hccccccccc-cCCCCCCC-ccccCChhHHhhccccccCcccCcccCCCCCcccCC
Q 045926 154 FVIKDLVVDLTNFYQ---------QYKSIEPWLK-TNMVPKDG-REYRQSPADRKKLDGLYECILCACCTTSCPSYWWNP 222 (302)
Q Consensus 154 ~vikDLvvD~~~~~~---------~~~~~~~~l~-~~~~~~~~-~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~ 222 (302)
..+-+|++..|+..+ +++++.-.+. ...+++.. +.+......+.+..+.++||+||+|+++|-.++.
T Consensus 82 ~~~~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~c~e~~g-- 159 (603)
T TIGR01973 82 EGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANEVAG-- 159 (603)
T ss_pred HHHHHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCcccccCCCCCCCCCeEecCCcCccccHHHHHHHHhhC--
Confidence 244555565666543 4444432221 12222211 1111222234567899999999999999976552
Q ss_pred CCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHH
Q 045926 223 EEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPAD 281 (302)
Q Consensus 223 ~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~ 281 (302)
..++ .+...+.+ .++... .+..+.|.+||+|+++||+|+-...
T Consensus 160 -----~~~l----~~~~rg~~----~~i~~~---~~~~~~~~~cg~cv~vCP~GAl~~k 202 (603)
T TIGR01973 160 -----VEDL----GVIGRGNN----VEIGTY---EGKTLESELSGNLIDICPVGALTSK 202 (603)
T ss_pred -----CceE----EEeccCCC----CEEecC---CCCCCCCcccCChHhhCCccccccc
Confidence 1111 11111111 011111 1134578999999999999996433
No 25
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.67 E-value=2.4e-17 Score=174.28 Aligned_cols=185 Identities=13% Similarity=0.171 Sum_probs=113.6
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEE-----CC--EEe
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNI-----GG--TNT 130 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~V-----nG--~~~ 130 (302)
|++|+|+. ++ +++.+ |+|||+|++..| ..+|++|++.... .|.|+.|.|+| +| +.+
T Consensus 1 ~~~i~idg------------~~--~~~~~-g~til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~ 64 (847)
T PRK08166 1 MATIHVDG------------KE--YEVNG-ADNLLEACLSLG-IDIPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLV 64 (847)
T ss_pred CeEEEECC------------EE--EEeCC-CCHHHHHHHHcC-CCCCccccCCCCCCCCccCCCeEEEeecCccCCCCcc
Confidence 57888876 33 44556 999999999998 5699999988754 79999999999 33 467
Q ss_pred ccccccccCCCCCceEEccCC-----Cchhhhhhhhccchhhh---------hcccccccccc-CCCCCCCc-cccCChh
Q 045926 131 VACLKPIDGDTSKPTIITPLP-----HMFVIKDLVVDLTNFYQ---------QYKSIEPWLKT-NMVPKDGR-EYRQSPA 194 (302)
Q Consensus 131 laC~t~v~~~~~~~~~Iepl~-----~~~vikDLvvD~~~~~~---------~~~~~~~~l~~-~~~~~~~~-e~~~s~~ 194 (302)
+||+|++.++ +.|+--+ ....+.+|++..|+..+ .+|++.-++.. ..++...+ .+..+..
T Consensus 65 ~aC~~~v~~g----m~v~t~~~~~~~~r~~~~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~ 140 (847)
T PRK08166 65 MSCMTPATDG----TFISIDDPEAKAFRASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDL 140 (847)
T ss_pred cCcCCCCCCC----CEEEeCCHHHHHHHHHHHHHHHhcCCCCCCccCCCCCchHHHHHHHhCCCCccCCCcCccccccCC
Confidence 8999999872 3333221 12244555555555543 44544333321 22222111 1111122
Q ss_pred HHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926 195 DRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP 274 (302)
Q Consensus 195 ~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP 274 (302)
.+.+..++++||+||+|+.+|..++.. ..+|- .++... .. +....+....|.+||+|+++||
T Consensus 141 ~~~i~~d~~rCi~C~rCVr~c~e~~g~--~~l~~-----------~~~~~~--~~---~~~~~~~~~~~~~~G~cv~vCP 202 (847)
T PRK08166 141 GPFISHEMNRCIACYRCVRYYKDYAGG--TDLGV-----------YGAHDN--VY---FGRPEDGTLESEFSGNLVEVCP 202 (847)
T ss_pred CCceEecCCcCccccHHHHHHHhhcCc--ceEEE-----------eecCce--eE---ecCCCCCcccChhhCChHhhCC
Confidence 345678999999999999999876521 11211 011110 00 1100113457899999999999
Q ss_pred CCCCHHH
Q 045926 275 KGLDPAD 281 (302)
Q Consensus 275 ~gI~~~~ 281 (302)
+|+-...
T Consensus 203 ~GAl~~k 209 (847)
T PRK08166 203 TGVFTDK 209 (847)
T ss_pred chhcccc
Confidence 9996544
No 26
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=99.39 E-value=5e-13 Score=130.25 Aligned_cols=98 Identities=23% Similarity=0.476 Sum_probs=76.8
Q ss_pred ccCChhHHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccccc
Q 045926 189 YRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKN 268 (302)
Q Consensus 189 ~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~ 268 (302)
..+++++....+.+..||+||.|..+||+|...+.++.+|++.+..++.+.+++... . .. . +.+|.|++||+
T Consensus 9 ~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~--~---~~--~-~~~~~C~~C~~ 80 (407)
T PRK11274 9 IRDTPEGEEAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVT--E---KT--Q-LHLDRCLTCRN 80 (407)
T ss_pred ccCChhhhHhHHHHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccc--h---hh--c-cccccCccccc
Confidence 345555556667788999999999999999987778999999888777766554211 0 11 1 26899999999
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhhcC
Q 045926 269 CTATCPKGLDPADAIHKMKTKHMLSQ 294 (302)
Q Consensus 269 C~~vCP~gI~~~~~I~~lR~~l~~~~ 294 (302)
|+.+||.+|++.++|..+|..+.+++
T Consensus 81 C~~~CP~~v~~~~li~~~r~~~~~~~ 106 (407)
T PRK11274 81 CETTCPSGVQYGRLLDIGRKVVEEKV 106 (407)
T ss_pred hhhhCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998776543
No 27
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=99.34 E-value=1.1e-12 Score=114.44 Aligned_cols=83 Identities=27% Similarity=0.546 Sum_probs=65.9
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHH
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPA 280 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~ 280 (302)
.+..|++||.|+++||+... ..++|+-+++..+... +| ..+. .. .+|.|++|+.|...||.++++.
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~---t~y~pR~ii~~~~~g~--~d-------~il~-~~-~lW~C~tCytC~eRCPr~v~i~ 102 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRF---TDYSPRKIIRKARLGL--VD-------LILS-SE-SLWACVTCYTCTERCPRGVKIV 102 (195)
T ss_pred hHhHhhccCcccCCCCCccc---CCCCHHHHHHHHHccc--HH-------HHhc-CC-cceeeeechhhhhhCCCCCCHH
Confidence 45669999999999999875 2468998877665421 11 1122 22 7999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcc
Q 045926 281 DAIHKMKTKHMLSQPME 297 (302)
Q Consensus 281 ~~I~~lR~~l~~~~~~~ 297 (302)
++|+.+|+.+++.|..+
T Consensus 103 ~vv~~lR~~a~k~G~~~ 119 (195)
T COG1150 103 EVVKALRNIAVKEGLIE 119 (195)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999998854
No 28
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.29 E-value=4.4e-12 Score=97.26 Aligned_cols=66 Identities=26% Similarity=0.485 Sum_probs=49.0
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccc----cC-CCCCccCccEEEECCEE-ec
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYR----RS-CREGICGSCAMNIGGTN-TV 131 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~----~~-C~~g~CG~C~V~VnG~~-~l 131 (302)
++|+|.|+. ++|++ .+ |.|||+||.+++ +++|++|+. .. |..|.|+.|.|+|||+. ++
T Consensus 2 ~~v~i~idG------------~~v~~--~~-G~til~al~~~g-i~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~ 65 (82)
T PF13510_consen 2 KMVTITIDG------------KPVEV--PP-GETILEALLAAG-IDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVR 65 (82)
T ss_dssp EEEEEEETT------------EEEEE--EE-T-BHHHHHHHTT---B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEE
T ss_pred CEEEEEECC------------EEEEE--cC-CCHHHHHHHHCC-CeEEEeeeccCcccccCCccccceEEEEECCCcceE
Confidence 578898888 44555 46 999999999998 569999997 44 88999999999999987 89
Q ss_pred cccccccC
Q 045926 132 ACLKPIDG 139 (302)
Q Consensus 132 aC~t~v~~ 139 (302)
||.|++.+
T Consensus 66 AC~t~v~~ 73 (82)
T PF13510_consen 66 ACSTPVED 73 (82)
T ss_dssp TTT-B--T
T ss_pred cccCCCcC
Confidence 99999987
No 29
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=99.28 E-value=6.1e-12 Score=106.19 Aligned_cols=79 Identities=20% Similarity=0.424 Sum_probs=56.6
Q ss_pred ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHH
Q 045926 203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADA 282 (302)
Q Consensus 203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~ 282 (302)
..||+||.|.++||++... .+.|+.+.+.. .++.. ...+. . +.+|.|++||.|..+||++|++.++
T Consensus 2 ~~Ci~CG~C~~~CP~~~~~---~~~~~~~~~~~---~~g~~------~~~~~-~-~~~~~C~~Cg~C~~~CP~~i~~~~~ 67 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRRT---SYRTRLIIRKA---LLGLK------DEVIS-D-DDLWMCTTCYTCQERCPRDVKITDI 67 (144)
T ss_pred ccccCCCCCcCcCCCcccc---CCCHHHHHHHH---Hccch------hhhcc-C-CCCCcCcCcCchhhhcCCCCCHHHH
Confidence 5799999999999997531 23455443332 22211 01122 2 2789999999999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 045926 283 IHKMKTKHMLSQP 295 (302)
Q Consensus 283 I~~lR~~l~~~~~ 295 (302)
|..+|+.+..++.
T Consensus 68 i~~~R~~~~~~g~ 80 (144)
T TIGR03290 68 IKALRNLAAKKGF 80 (144)
T ss_pred HHHHHHHHHHcCC
Confidence 9999988877654
No 30
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=99.26 E-value=2.9e-12 Score=123.26 Aligned_cols=84 Identities=25% Similarity=0.520 Sum_probs=64.2
Q ss_pred hccccccCcccCcccCCCCCccc-----CCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccccccccc
Q 045926 198 KLDGLYECILCACCTTSCPSYWW-----NPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTAT 272 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~-----~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~v 272 (302)
.+.....||+||+|..+||+|+. ..+-|.||.+.+... +..+.+ ...+..+.|+.||.|.++
T Consensus 303 ~~re~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~--~~~g~~-----------~~~~~~~~c~lcg~C~ev 369 (459)
T COG1139 303 EFREALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSP--ILGGYD-----------AAGDLPYACSLCGACTEV 369 (459)
T ss_pred HHHHHHHhhcchHhhhcChhhhhccCeecccccCCcccceecc--hhcchh-----------hccccchhhccccCCCCc
Confidence 34567789999999999999984 345788887654332 122211 112267899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhcC
Q 045926 273 CPKGLDPADAIHKMKTKHMLSQ 294 (302)
Q Consensus 273 CP~gI~~~~~I~~lR~~l~~~~ 294 (302)
||+.|++.++|.++|+...+++
T Consensus 370 CPv~Ipl~eli~~lR~~~~~~~ 391 (459)
T COG1139 370 CPVKIPLPELIRKLRRVAAESG 391 (459)
T ss_pred CCCCCCHHHHHHHHHHHHhhcC
Confidence 9999999999999999888763
No 31
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=99.24 E-value=2.2e-11 Score=102.90 Aligned_cols=75 Identities=16% Similarity=0.363 Sum_probs=63.2
Q ss_pred EEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEecccccccc
Q 045926 60 KEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID 138 (302)
Q Consensus 60 ~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~ 138 (302)
++|+|+. +.+++++++ +++|||+|++ ++ -.+.+.+|..|.||+|+|.|||+++.||.+++.
T Consensus 2 i~~~vNG------------~~~~~~~~~-~~~Ll~~LR~~lg-----ltg~K~gC~~G~CGACtVlvdg~~v~SCl~~~~ 63 (148)
T TIGR03193 2 LRLTVNG------------RWREDAVAD-NMLLVDYLRDTVG-----LTGTKQGCDGGECGACTVLVDGRPRLACSTLAH 63 (148)
T ss_pred EEEEECC------------EEEEeecCC-CCcHHHHHHHhcC-----CCCCCCCCCCCCCCCCEEEECCeEeeccHhhHh
Confidence 5788887 567888887 8999999997 33 346889999999999999999999999999998
Q ss_pred CCCC-CceEEccCCC
Q 045926 139 GDTS-KPTIITPLPH 152 (302)
Q Consensus 139 ~~~~-~~~~Iepl~~ 152 (302)
...| +..|||+|..
T Consensus 64 ~~~G~~V~TiEgl~~ 78 (148)
T TIGR03193 64 RVAGRKVETVEGLAT 78 (148)
T ss_pred hcCCCcEEEeCCCCC
Confidence 7655 4679998863
No 32
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=99.21 E-value=3.6e-11 Score=102.70 Aligned_cols=77 Identities=19% Similarity=0.362 Sum_probs=64.8
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI 137 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v 137 (302)
..++|+|++ +.+++++++ +++|||+|++.+. .+.+.+|..|.||+|+|.|||+++.||.+++
T Consensus 7 ~~i~~~vNG------------~~~~~~~~~-~~~Ll~~LR~~gl-----tgtK~GC~~G~CGACtVlvdg~~v~SCl~~a 68 (159)
T PRK09908 7 ITIECTING------------MPFQLHAAP-GTPLSELLREQGL-----LSVKQGCCVGECGACTVLVDGTAIDSCLYLA 68 (159)
T ss_pred eeEEEEECC------------EEEEEecCC-CCcHHHHHHHcCC-----CCCCCCcCCCCCCCcEEEECCcEeehhHhhH
Confidence 358899998 668898887 8999999997532 3578899999999999999999999999999
Q ss_pred cCCCC-CceEEccCCC
Q 045926 138 DGDTS-KPTIITPLPH 152 (302)
Q Consensus 138 ~~~~~-~~~~Iepl~~ 152 (302)
....+ +..|||.|..
T Consensus 69 ~~~~G~~V~TiEGl~~ 84 (159)
T PRK09908 69 AWAEGKEIRTLEGEAK 84 (159)
T ss_pred HHhCCCEEEeecCCCC
Confidence 87655 4568998763
No 33
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=99.17 E-value=2.8e-11 Score=119.06 Aligned_cols=84 Identities=18% Similarity=0.435 Sum_probs=64.0
Q ss_pred ccccccCcccCcccCCCCCcccC-----CCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccC
Q 045926 199 LDGLYECILCACCTTSCPSYWWN-----PEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATC 273 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~-----~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vC 273 (302)
+.++.+||+||.|..+||+|... ...|.||++.+... +.++.. .. .+..+.|+.||.|+.+|
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~--~~~g~~--------~~---~~~~~~C~~Cg~C~~vC 355 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSP--LLGGYT--------DY---KHLPYLSSLCGACREVC 355 (432)
T ss_pred hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHH--Hhcccc--------cc---cccCccchhhhhhhccC
Confidence 66788999999999999999743 23588898765422 122210 01 11468999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC
Q 045926 274 PKGLDPADAIHKMKTKHMLSQP 295 (302)
Q Consensus 274 P~gI~~~~~I~~lR~~l~~~~~ 295 (302)
|++|++.++|..+|+.+.+.+.
T Consensus 356 P~gI~~~~li~~~R~~~~~~g~ 377 (432)
T TIGR00273 356 PVKIPLPELIREHRSDKVEKGR 377 (432)
T ss_pred CCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999987654
No 34
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=99.16 E-value=6.2e-11 Score=100.41 Aligned_cols=77 Identities=19% Similarity=0.417 Sum_probs=65.3
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP 136 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~ 136 (302)
.+++|+|++ +.+++++++ +++|||+|++ ++- -..+.+|..|.||+|+|.|||+.+.||.++
T Consensus 2 ~~i~ltvNG------------~~~~~~~~p-~~~Ll~~LRd~l~l-----tgtk~GC~~g~CGACtVlvDG~~v~SCl~~ 63 (156)
T COG2080 2 MPITLTVNG------------EPVELDVDP-RTPLLDVLRDELGL-----TGTKKGCGHGQCGACTVLVDGEAVNSCLTL 63 (156)
T ss_pred CcEEEEECC------------eEEEEEeCC-CChHHHHHHHhcCC-----CCcCCCCCCccCCceEEEECCeEehHHHHH
Confidence 468999999 679999998 8999999995 442 246778999999999999999999999999
Q ss_pred ccCCCC-CceEEccCCC
Q 045926 137 IDGDTS-KPTIITPLPH 152 (302)
Q Consensus 137 v~~~~~-~~~~Iepl~~ 152 (302)
+....| +..|||.|..
T Consensus 64 a~~~~G~~ItTiEGl~~ 80 (156)
T COG2080 64 AVQAEGAEITTIEGLAK 80 (156)
T ss_pred HHHhCCCeEEEeecccC
Confidence 987655 5668998863
No 35
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=99.13 E-value=6.2e-11 Score=115.05 Aligned_cols=82 Identities=30% Similarity=0.592 Sum_probs=61.0
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHH-HHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCH
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAAL-LHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDP 279 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l-~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~ 279 (302)
.+..||+||.|.++||+|..+ +.|.||..+ ....++..+. .+ .. .. .++.|+.||.|..+||.+|++
T Consensus 5 ~~~~Ci~Cg~C~~~CP~~~~~-~~~~g~~~~~~~~~~~~~~~-----~~---~~--~~-~~~~C~~C~~C~~~CP~~i~~ 72 (396)
T PRK11168 5 SFDSCIKCTVCTTACPVARVN-PLYPGPKQAGPDGERLRLKD-----GA---LY--DE-SLKYCSNCKRCEVACPSGVKI 72 (396)
T ss_pred chhhcCCCCCCCccCCCcccC-CCCCChhhhccHHHHHhccc-----hh---hc--CC-CCCcCcCcCccCcccCCCCCH
Confidence 467899999999999999864 347777655 2333332111 00 11 22 789999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 045926 280 ADAIHKMKTKHMLSQ 294 (302)
Q Consensus 280 ~~~I~~lR~~l~~~~ 294 (302)
.++|..+|..+.+.+
T Consensus 73 ~~~i~~~r~~~~~~~ 87 (396)
T PRK11168 73 GDIIQRARAKYVTER 87 (396)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 36
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=99.11 E-value=2.8e-10 Score=101.65 Aligned_cols=78 Identities=21% Similarity=0.384 Sum_probs=63.2
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI 137 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v 137 (302)
..++|+|+. +.+.+++++ ++||||+|++-.. -...+.+|++|.||+|+|.|||+++.||.+++
T Consensus 50 ~~i~~~VNG------------~~~~~~v~~-~~tLLd~LR~~l~----ltGtK~GC~~G~CGACTVlVdG~~v~SCl~la 112 (217)
T PRK11433 50 SPVTLKVNG------------KTEQLEVDT-RTTLLDALREHLH----LTGTKKGCDHGQCGACTVLVNGRRLNACLTLA 112 (217)
T ss_pred ceEEEEECC------------EEEEEecCC-CCcHHHHHHHhcC----CCCCCCCCCCCCcCceEEEECCEEeeeeeeeh
Confidence 458888888 668888888 8999999997321 12456789999999999999999999999999
Q ss_pred cCCCC-CceEEccCCC
Q 045926 138 DGDTS-KPTIITPLPH 152 (302)
Q Consensus 138 ~~~~~-~~~~Iepl~~ 152 (302)
....+ +..|||.|..
T Consensus 113 ~~~~G~~ItTiEGL~~ 128 (217)
T PRK11433 113 VMHQGAEITTIEGLGS 128 (217)
T ss_pred hhcCCCEEEEeCCcCC
Confidence 66544 4678998864
No 37
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=99.05 E-value=4e-10 Score=95.79 Aligned_cols=75 Identities=25% Similarity=0.402 Sum_probs=62.3
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI 137 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v 137 (302)
.++|+|++ +.+++++.+ ++++|++|+. ++. -..+.+|..|.||+|+|.|||+++.||.+++
T Consensus 3 ~i~f~vNG------------~~~~~~~~~-~~~Ll~~LR~~~~l-----tgtK~gC~~G~CGACtVlvdG~~v~SCl~~~ 64 (151)
T TIGR03198 3 QFRFTVNG------------QAWEVAAVP-TTRLSDLLRKELQL-----TGTKVSCGIGRCGACSVLIDGKLANACLTMA 64 (151)
T ss_pred cEEEEECC------------EEEEeecCC-CcHHHHHHHhccCC-----CCCCCCCCCCcCCccEEEECCcEEechHHHH
Confidence 47888888 668888877 8999999997 342 3567789999999999999999999999999
Q ss_pred cCCCC-CceEEccCC
Q 045926 138 DGDTS-KPTIITPLP 151 (302)
Q Consensus 138 ~~~~~-~~~~Iepl~ 151 (302)
....+ +..|||.|.
T Consensus 65 ~~~~G~~v~TiEgl~ 79 (151)
T TIGR03198 65 YQADGHEITTIEGIA 79 (151)
T ss_pred HHhcCCEEEecCCcC
Confidence 87655 456899874
No 38
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.04 E-value=1.3e-09 Score=112.61 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=56.3
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CCCCccCccEEEECCEE--ecccc
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CREGICGSCAMNIGGTN--TVACL 134 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~~g~CG~C~V~VnG~~--~laC~ 134 (302)
.+++|+|+. .++++.+ |+|||+||+..| .++|+||++.. |..|.|+.|.|+|||.. ++||+
T Consensus 2 ~~v~~~idg--------------~~~~~~~-g~ti~~a~~~~g-~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~ 65 (652)
T PRK12814 2 NTISLTING--------------RSVTAAP-GTSILEAAASAG-ITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACS 65 (652)
T ss_pred CeEEEEECC--------------EEEEeCC-cCcHHHHHHHcC-CccccccCCCCCCCccccceeEEEECCCcceecCcC
Confidence 368888888 3455556 999999999998 57999999865 78999999999999964 78999
Q ss_pred ccccC
Q 045926 135 KPIDG 139 (302)
Q Consensus 135 t~v~~ 139 (302)
|++.+
T Consensus 66 t~~~~ 70 (652)
T PRK12814 66 TAVSE 70 (652)
T ss_pred CCCCC
Confidence 99987
No 39
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=98.94 E-value=8.4e-10 Score=107.39 Aligned_cols=81 Identities=28% Similarity=0.523 Sum_probs=57.3
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhh--cccccccCcccccccccCCCCCC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTE--DERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~--~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.+..||+||.|.++||+|..+ +.|.||..... + ..++..... -.+.++.|+.||.|..+||.+|+
T Consensus 3 ~~~~Ci~Cg~C~~~Cp~~~~~-~~~~g~~~~~~--------~----~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~i~ 69 (397)
T TIGR03379 3 SFESCIKCTVCTVYCPVAKAN-PLYPGPKQAGP--------D----GERLRLKSAELYDEALKYCTNCKRCEVACPSDVK 69 (397)
T ss_pred chhhCCCCCCCcccCcCcccc-CCccCcccCCc--------H----HHHHhcccchhcccccccCcCcCccchhcCCCCC
Confidence 356899999999999999864 34666543100 0 001110000 01268999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 045926 279 PADAIHKMKTKHMLSQ 294 (302)
Q Consensus 279 ~~~~I~~lR~~l~~~~ 294 (302)
+.++|.++|..+.+.+
T Consensus 70 ~~~~i~~~R~~~~~~~ 85 (397)
T TIGR03379 70 IGDIIARARNKYQKKK 85 (397)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999887654
No 40
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=98.89 E-value=1.3e-09 Score=104.95 Aligned_cols=86 Identities=29% Similarity=0.566 Sum_probs=67.0
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCH
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDP 279 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~ 279 (302)
..+.+|++||.|.++||++... +.++|+..+...+.....+... .+ ... +.+|.|+.|++|+..||.+|++
T Consensus 6 ~~~~~Cv~Cg~C~~~CP~~~~~--~~~sPrgr~~~~r~~~~~~~~~-~~---~~~---~~~~~C~~C~~C~~~CP~~i~~ 76 (388)
T COG0247 6 ESLDKCVHCGFCTNVCPSYRAT--EALSPRGRIVLVREVLRGKAPG-DE---EVY---EALDTCLACGACATACPSGIDI 76 (388)
T ss_pred HHHHhcCCCCcccCcCCCcccc--CCCCCchHHHHHHHHHhCCCcc-hh---hhH---HHHHhCcCccchHhhCCCCCcH
Confidence 4467899999999999999864 6788988877776655433210 11 111 1679999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 045926 280 ADAIHKMKTKHMLSQ 294 (302)
Q Consensus 280 ~~~I~~lR~~l~~~~ 294 (302)
.+++..+|+...+..
T Consensus 77 ~~~~~~~r~~~~~~~ 91 (388)
T COG0247 77 GDLIREARRKLAKGL 91 (388)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999888764
No 41
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=98.87 E-value=3.9e-10 Score=79.82 Aligned_cols=57 Identities=33% Similarity=0.813 Sum_probs=26.4
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
++++||+||.|+++||++.. .. .+....++... ..+.+ ..|.|+.||+|+.+||+||
T Consensus 1 d~~~Ci~Cg~C~~~CP~~~~------------~~-~~~~~~~~~~~----~~~~~---~~~~C~~C~~C~~~CP~~I 57 (57)
T PF13183_consen 1 DLSKCIRCGACTSVCPVYRN------------TG-RFSHPPRDRRS----AVLRE---EAWSCTTCGACSEVCPVGI 57 (57)
T ss_dssp HHHC--S-SHHHHCSHHHHH------------HH-HHHTSTTS--H----HHHHH---HHGG-----HHHHH-TT--
T ss_pred CHHHccCccChHHHChhhhc------------cc-ccccCcchhHH----Hhhcc---cccCCcCcCCccCcCcccc
Confidence 35789999999999996541 11 22233333211 11111 3499999999999999987
No 42
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=98.79 E-value=1.2e-09 Score=78.50 Aligned_cols=61 Identities=31% Similarity=0.707 Sum_probs=32.4
Q ss_pred cCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
+|++||.|+.+||++..++. .|..++..+... ..+ .+.+.. .++.|+.||.|..+||.|||
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~~---~~~~~~~~~~~~--~~~--------~~~~~~-~~~~C~~Cg~C~~~CP~~l~ 61 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATPD---EPRSPMRAIYLG--KID--------EISESH-AASLCIGCGLCESVCPQGLD 61 (61)
T ss_dssp T----STTGGGSHHHHHCTT---THHHHHHHHHHC--HCH--------TTHHHT-TTTT--S--HHHHH-TT---
T ss_pred CCCCCCcCcccCCCccccCc---cHHHHHHHHHHh--cch--------hhhhCc-ccccCcCcCcCcccccCCCc
Confidence 59999999999999986443 366666665441 111 111112 78999999999999999986
No 43
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=98.77 E-value=4.2e-09 Score=100.67 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=34.9
Q ss_pred ccccCcccccccccCCCCCCHHHHHHHHHHHHhhcCCcc
Q 045926 259 KLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPME 297 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~~~~ 297 (302)
+.+.|+.||+|..+||++|++.++|..+|+.+.+...+|
T Consensus 305 g~~~CvgCGrC~~~CP~~I~i~~~i~~lr~~~~~~~~~~ 343 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYISFSNCINKLTDAVEEVLAEE 343 (344)
T ss_pred chhhCcCcCccccccCCCCCHHHHHHHHHHHHHHhhhcc
Confidence 678999999999999999999999999999887766544
No 44
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=98.65 E-value=3.7e-08 Score=105.54 Aligned_cols=75 Identities=20% Similarity=0.132 Sum_probs=63.3
Q ss_pred EEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CCCCccCccEEEECCEEecccccccc
Q 045926 60 KEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CREGICGSCAMNIGGTNTVACLKPID 138 (302)
Q Consensus 60 ~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~~g~CG~C~V~VnG~~~laC~t~v~ 138 (302)
++|+|+. +.+++++++ +++|||+|++++. .+.+.+ |..|.||+|+|.|||+++.||.+++.
T Consensus 3 i~~~vNg------------~~~~~~~~~-~~~l~~~LR~~~~-----~~~k~g~c~~g~CGaCtv~~dg~~v~sC~~~~~ 64 (956)
T PRK09800 3 IHFTLNG------------APQELTVNP-GENVQKLLFNMGM-----HSVRNSDDGFGFAGSDAIIFNGNIVNASLLIAA 64 (956)
T ss_pred EEEEECC------------EEEEEecCC-CCCHHHHHHHCCC-----CccccCCCCcccCCCCEEEECCeEEeHHHHHHH
Confidence 7888888 568888887 8999999999663 356776 88999999999999999999999998
Q ss_pred CCCC-CceEEccCCC
Q 045926 139 GDTS-KPTIITPLPH 152 (302)
Q Consensus 139 ~~~~-~~~~Iepl~~ 152 (302)
...+ +..|||.|..
T Consensus 65 ~~~g~~i~Tvegl~~ 79 (956)
T PRK09800 65 QLEKADIRTAESLGK 79 (956)
T ss_pred HcCCCEEEecCCcCC
Confidence 7655 4568998863
No 45
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=98.60 E-value=5e-08 Score=96.45 Aligned_cols=75 Identities=21% Similarity=0.405 Sum_probs=54.4
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCH
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDP 279 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~ 279 (302)
.....||.||.|+.+||... .|..+..+.. ..+ +.... .. +.+.|+.||.|+.+||.++++
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l-------~p~~l~~~~~---~~~-------~~~~~-~~-~~~~C~~Cg~C~~vCP~~i~l 420 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNL-------LPQQLNWLAL---ADE-------FDEAE-EH-NLMDCIECGCCSYVCPSNIPL 420 (435)
T ss_pred ccCCcCcCccchhhhCccch-------hhHHHHHHhh---hcc-------cchhh-cC-CCCcCCcCCCcccccCCCCCH
Confidence 45579999999999999753 3444433321 111 11111 23 678999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 045926 280 ADAIHKMKTKHMLS 293 (302)
Q Consensus 280 ~~~I~~lR~~l~~~ 293 (302)
.+.|+..|+.+.++
T Consensus 421 ~~~ir~~k~~l~~~ 434 (435)
T TIGR01945 421 VQYIRQAKAKLRAK 434 (435)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988654
No 46
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=98.54 E-value=1.4e-07 Score=94.00 Aligned_cols=94 Identities=17% Similarity=0.363 Sum_probs=73.1
Q ss_pred EEEEEEecCCCCCCCCCceeEEEE-ecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEE----CC-----E
Q 045926 60 KEFRIYRWNPDRPDSKPFLQSYHV-DLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNI----GG-----T 128 (302)
Q Consensus 60 ~~~~I~r~~p~~~~~~~~~~~y~v-~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~V----nG-----~ 128 (302)
++|+|++ +.+++ ++++ ++||||+|++ ++. .+.+.+|..|.||+|+|.| || +
T Consensus 1 i~~~~Ng------------~~~~~~~~~~-~~~ll~~lR~~~~l-----~g~k~gC~~G~CGaCtv~~~~~~~~~~~~~~ 62 (467)
T TIGR02963 1 IRFFLNG------------ETVTLSDVDP-TRTLLDYLREDAGL-----TGTKEGCAEGDCGACTVVVGELVDGGKLRYR 62 (467)
T ss_pred CEEEECC------------EEEEeecCCC-CCCHHHHHHHhcCC-----CCCCcccCCCCCCceEEEEEecCCCCcccce
Confidence 3577777 66888 6877 8999999996 443 3578899999999999999 99 9
Q ss_pred EeccccccccCCCC-CceEEccCCC----chhhhhhhhccchhhhhcc
Q 045926 129 NTVACLKPIDGDTS-KPTIITPLPH----MFVIKDLVVDLTNFYQQYK 171 (302)
Q Consensus 129 ~~laC~t~v~~~~~-~~~~Iepl~~----~~vikDLvvD~~~~~~~~~ 171 (302)
++.||.+++....| +.+|||.|.. +..++.-.++.+.+-+.|.
T Consensus 63 ~v~sCl~~~~~~~g~~i~TvEgl~~~~~~l~~~q~a~~~~~~~QCG~C 110 (467)
T TIGR02963 63 SVNACIQFLPSLDGKAVVTVEDLRQPDGRLHPVQQAMVECHGSQCGFC 110 (467)
T ss_pred EEehhhhhHHhcCCCEEEecCCCCCCCCCCCHHHHHHHHcCCCcCCCC
Confidence 99999999987655 4569999973 2335555667777766554
No 47
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=98.49 E-value=1.3e-07 Score=101.46 Aligned_cols=68 Identities=19% Similarity=0.094 Sum_probs=56.1
Q ss_pred eEEEEecCCCchhHHHHHHHcccccCCCccccc-CCCCCccCccEEEECCEEeccccccccCCCC-CceEEccCCC
Q 045926 79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRR-SCREGICGSCAMNIGGTNTVACLKPIDGDTS-KPTIITPLPH 152 (302)
Q Consensus 79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~-~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~-~~~~Iepl~~ 152 (302)
+.+++++++ +++||++|++.+. .+.+. +|..|.||+|+|.|||+++.||.+++....+ +..|||.|..
T Consensus 6 ~~~~~~~~~-~~~l~~~LR~~~l-----~~~k~~~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl~~ 75 (951)
T TIGR03313 6 APQTLECKL-GENVQTLLFNMGM-----HSVRNSDDGFGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESLGQ 75 (951)
T ss_pred EEEEEecCC-CCCHHHHHHHCCC-----CCCcCCCCCcccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcCCC
Confidence 557888887 8999999998542 24666 6999999999999999999999999987655 4568998863
No 48
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=98.48 E-value=2.2e-07 Score=98.69 Aligned_cols=65 Identities=25% Similarity=0.505 Sum_probs=54.1
Q ss_pred EEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEeccccccccCCCC-CceEEccCCC
Q 045926 82 HVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTS-KPTIITPLPH 152 (302)
Q Consensus 82 ~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~-~~~~Iepl~~ 152 (302)
.+++++ +++||++|++ ++. .+.+.+|..|.||+|+|.|||+++.||.+++....+ +..|||.|..
T Consensus 9 ~~~~~~-~~~l~~~lr~~~~~-----~~~k~gc~~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl~~ 75 (848)
T TIGR03311 9 EVDVNE-EKKLLEFLREDLRL-----TGVKNGCGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGLTE 75 (848)
T ss_pred EeeCCC-CCcHHHHHHHhcCC-----CcCCCCCCCCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCCCC
Confidence 456666 8999999996 553 257889999999999999999999999999988655 4568998864
No 49
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=98.44 E-value=1.7e-07 Score=89.30 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=31.0
Q ss_pred ccccCcccccccccCCCCCCHHHHHHHHHHHHhh
Q 045926 259 KLYRCRAIKNCTATCPKGLDPADAIHKMKTKHML 292 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~ 292 (302)
+...|+.||+|.++||++|++.++|..||+.+.+
T Consensus 299 G~~~CvgCGrC~~~CP~~idi~~~i~~i~~~~~~ 332 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEYISFSNCINKLTAAVRE 332 (334)
T ss_pred CccccCCcCchhhhCCCCCCHHHHHHHHHHHHhc
Confidence 6678999999999999999999999999987654
No 50
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=98.43 E-value=1.8e-07 Score=97.15 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=55.2
Q ss_pred HhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926 196 RKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK 275 (302)
Q Consensus 196 ~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~ 275 (302)
....+...+|+.||.|+.+||.... +..+.+...++.. ..+. . ..+.|+.||+|.++||+
T Consensus 397 eEl~~eadrCI~CG~Cv~aCP~~l~----------i~~~I~~a~~G~~-------~~l~--~-l~~~Ct~CG~CeeVCPt 456 (781)
T PRK00941 397 EELKELAKKCTECGWCVRVCPNELP----------IPEAMEAAAKGDL-------SKLE--D-LYDKCIGCGRCEQVCPK 456 (781)
T ss_pred HHHHHhhhhCcCCCCccccCCCCcc----------hhHHHHHHhcCCh-------hhhh--h-hhhhccchhHHhhhCCC
Confidence 4455677899999999999997431 0111222122211 0111 1 35789999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCC
Q 045926 276 GLDPADAIHKMKTKHMLSQP 295 (302)
Q Consensus 276 gI~~~~~I~~lR~~l~~~~~ 295 (302)
++++.+++..+|+.+++..+
T Consensus 457 gIpi~emi~~Ar~~~Vk~~k 476 (781)
T PRK00941 457 NIPIVSMIEKAAQHRIKNEK 476 (781)
T ss_pred CCChHHHHHHHHHHHHHhcC
Confidence 99999999999988876543
No 51
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=98.42 E-value=3.5e-07 Score=69.19 Aligned_cols=52 Identities=31% Similarity=0.677 Sum_probs=42.0
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC------------------CEEeccccccccC
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG------------------GTNTVACLKPIDG 139 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn------------------G~~~laC~t~v~~ 139 (302)
+.+++++ |.|||+||+..+.. +..+|+.|.||+|.|+|. +..+|||.+.+..
T Consensus 10 ~~~~~~~-g~~ll~al~~~g~~------~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~ 79 (84)
T cd00207 10 VEVEVPE-GETLLDAAREAGID------IPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTD 79 (84)
T ss_pred EEEEECC-CCcHHHHHHHcCCC------cccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCC
Confidence 5667777 89999999997632 556799999999999996 4467899998853
No 52
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=98.41 E-value=1.8e-07 Score=97.10 Aligned_cols=75 Identities=19% Similarity=0.466 Sum_probs=52.5
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHH
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPA 280 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~ 280 (302)
....||.||.|+.+||... .|..+....+ ..+. ... ..+ +++.|+.||.|+.+||.+|++.
T Consensus 368 ~e~~CI~CG~Cv~aCP~~l-------lP~~l~~~~~----~~d~------~~~-~~~-~~~~CieCG~C~~vCPs~Iplv 428 (695)
T PRK05035 368 PEQPCIRCGACADACPASL-------LPQQLYWFAK----AEEH------DKA-QEY-NLFDCIECGACAYVCPSNIPLV 428 (695)
T ss_pred chhhcCCcccHHHHCCccc-------hhhhHHHhhh----cccc------chh-hhc-ChhhccccCcccccCCCCCcHH
Confidence 4578999999999999754 3433322211 1110 111 123 6789999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 045926 281 DAIHKMKTKHMLSQ 294 (302)
Q Consensus 281 ~~I~~lR~~l~~~~ 294 (302)
++|...+..+..+.
T Consensus 429 ~~~r~aK~~i~~~~ 442 (695)
T PRK05035 429 QYYRQAKAEIRAIE 442 (695)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999887765543
No 53
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=98.38 E-value=4.8e-07 Score=89.65 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=56.4
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcc--cccccccCCCCCCH
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRA--IKNCTATCPKGLDP 279 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~--Cg~C~~vCP~gI~~ 279 (302)
...||+||+|+.+||.. +-|..+++++.. .+. +... .. +++.|.. ||.|+.+||.+|+.
T Consensus 373 ~~~CI~Cg~C~~vCP~~-------L~P~~l~ra~~~----~d~------~~~e-~~-~~~~C~EedCG~CsyVCPskipL 433 (448)
T PRK05352 373 ERAMVPIGNYERVMPLD-------ILPTQLLRALIV----GDT------DEAQ-AL-GALELDEEDLALCTFVCPGKYEY 433 (448)
T ss_pred CcceeecCcHhhcCCCC-------CCHHHHHHHHHc----CCH------HHHH-Hc-CchhcCccccCCCccCCCCCchH
Confidence 45899999999999973 468777776643 111 1111 23 7899999 99999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 045926 280 ADAIHKMKTKHMLS 293 (302)
Q Consensus 280 ~~~I~~lR~~l~~~ 293 (302)
.+.|+..+..+.+.
T Consensus 434 ~q~iR~~k~~~~~e 447 (448)
T PRK05352 434 GPILRDGLDRIEKE 447 (448)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887654
No 54
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=98.38 E-value=2.8e-07 Score=95.48 Aligned_cols=81 Identities=20% Similarity=0.383 Sum_probs=55.2
Q ss_pred HHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926 195 DRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP 274 (302)
Q Consensus 195 ~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP 274 (302)
.....+...+|+.||.|+.+||+... . ........++.. ..+.. ..+.|+.||+|+++||
T Consensus 357 ~~el~~~~~kCI~CG~Cv~aCP~~l~-------i---~e~i~~~~~G~~-------~~l~~---~~~~Ct~CG~C~evCP 416 (731)
T cd01916 357 DEEFQELAAKCTDCGWCTRACPNSLR-------I---KEAMEAAKEGDF-------SGLAD---LFDQCVGCGRCEQECP 416 (731)
T ss_pred hHHHHHhhhcCCCCCcccccCCCCCc-------H---HHHHHHHhcCCh-------hhhhh---hHhhhhhhhHHhhhCC
Confidence 34445677899999999999997531 0 111111222211 01111 3578999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCC
Q 045926 275 KGLDPADAIHKMKTKHMLSQP 295 (302)
Q Consensus 275 ~gI~~~~~I~~lR~~l~~~~~ 295 (302)
+++++.++|..+++...+.+.
T Consensus 417 ~gIpi~~mi~~a~~~~vk~~~ 437 (731)
T cd01916 417 KEIPIINMIEKAARERIKEEK 437 (731)
T ss_pred CCCChHHHHHHHHHHHHhccc
Confidence 999999999999988776543
No 55
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=98.37 E-value=1.4e-07 Score=92.58 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=50.3
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECC--EEeccccccccC
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGG--TNTVACLKPIDG 139 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG--~~~laC~t~v~~ 139 (302)
|.|.+++ |+|||+|+..+| -++|.|||+..-. .|.|++|.|+|+- +++.||..++-.
T Consensus 40 ~~v~v~p-g~tvlqac~~~g-v~iprfcyh~rlsvagncrmclvevekspkpva~campvm~ 99 (708)
T KOG2282|consen 40 QSVMVEP-GTTVLQACAKVG-VDIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMK 99 (708)
T ss_pred eeEeeCC-CcHHHHHHHHhC-CCcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccC
Confidence 6788888 999999999999 5699999997644 6999999999997 688999999976
No 56
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=98.35 E-value=3.6e-08 Score=85.64 Aligned_cols=61 Identities=25% Similarity=0.412 Sum_probs=36.7
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.....||.|+.|..+||+.... ...+.+......+.. .- .. ....|++||.|+++||+++-
T Consensus 52 l~~~~CIgC~lCa~iCP~~aI~---------------m~~~~~~~~g~~~~~-~~-~I-n~grCIfCg~C~e~CPt~Al 112 (172)
T COG1143 52 LDRDKCIGCGLCANICPANAIT---------------METAERKVDGRKKPK-RP-DI-NLGRCIFCGLCVEVCPTGAL 112 (172)
T ss_pred ccccCCcchhHHHhhCCcCceE---------------EEEcccCCCCccccc-cc-ee-ccccccccCchhhhCchhhh
Confidence 3455699999999999986521 000111100000111 11 12 56799999999999999874
No 57
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=98.34 E-value=4.2e-07 Score=94.37 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=52.1
Q ss_pred HhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926 196 RKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK 275 (302)
Q Consensus 196 ~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~ 275 (302)
....+...+|+.||.|..+||..... ........++.. ..+. . ..+.|+.||+|.++||+
T Consensus 392 eeLl~~~~kCI~CG~Cv~aCP~~l~i----------~e~i~~a~~G~l-------~~l~--~-~~d~C~~CG~C~evCP~ 451 (784)
T TIGR00314 392 EELMELANKCTQCGNCVRTCPNSLRV----------DEAMAHAQKGDL-------SKLE--Q-LEEQCYACGRCEQACPK 451 (784)
T ss_pred HHHhhhcccCCCcccchhhCCCCcch----------HHHHHHHhcCCc-------cccc--c-CHhhhhhhhHHhccCCC
Confidence 35556788999999999999975310 111111112110 0111 1 34589999999999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 045926 276 GLDPADAIHKMKTKHML 292 (302)
Q Consensus 276 gI~~~~~I~~lR~~l~~ 292 (302)
+|++.++|..+|+...+
T Consensus 452 gIpIvemI~~Ar~~~v~ 468 (784)
T TIGR00314 452 NIPIISMITKAGEDRLK 468 (784)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999976544
No 58
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=98.32 E-value=7.4e-07 Score=88.21 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=55.1
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcc--cccccccCCCCCCH
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRA--IKNCTATCPKGLDP 279 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~--Cg~C~~vCP~gI~~ 279 (302)
...||.||+|+.+||+.. -|..+.++++. ++ ++.. +.. +++.|.. ||.|+.|||.+++.
T Consensus 372 ~~aCI~CG~C~~vCPm~L-------~P~~L~~a~~~----~d------~d~a-~~l-g~~ecieedCG~CsyVCPSki~l 432 (447)
T TIGR01936 372 ERAMIPIGIYERVMPLDI-------PPTLLLKALIA----GD------FDKA-QRL-GALEVDEEDFALCTFVDPSKYEY 432 (447)
T ss_pred ccceeECChHhhcCCCCC-------CHHHHHHHHHc----CC------HHHH-HHC-CCcccCccccccCceECCCCchH
Confidence 456999999999999753 57777666532 22 1111 134 7899998 99999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 045926 280 ADAIHKMKTKHMLS 293 (302)
Q Consensus 280 ~~~I~~lR~~l~~~ 293 (302)
.+.|+..-..+.+.
T Consensus 433 ~q~iR~~l~~~~~e 446 (447)
T TIGR01936 433 GSIVRESLDRIEKE 446 (447)
T ss_pred HHHHHHHHHHHHhc
Confidence 99998887777654
No 59
>CHL00134 petF ferredoxin; Validated
Probab=98.19 E-value=4.9e-06 Score=65.94 Aligned_cols=38 Identities=29% Similarity=0.596 Sum_probs=32.2
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI 125 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V 125 (302)
+.+++++ |.||||||.+.|. ....+|+.|.||+|.|.|
T Consensus 17 ~~~~~~~-~~tLL~a~~~~Gi------~i~~~C~~G~Cg~C~v~v 54 (99)
T CHL00134 17 VTIDCPD-DVYILDAAEEQGI------DLPYSCRAGACSTCAGKV 54 (99)
T ss_pred EEEEECC-CCcHHHHHHHcCC------CCCcCCCCccCCCCEEEE
Confidence 5677777 8999999999874 356679999999999988
No 60
>PLN00192 aldehyde oxidase
Probab=98.17 E-value=2.6e-06 Score=94.48 Aligned_cols=95 Identities=16% Similarity=0.270 Sum_probs=75.4
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEE-ecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEE----------C
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHV-DLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNI----------G 126 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v-~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~V----------n 126 (302)
.++|.|+. +.|++ ++++ ++||||.|++ ++. -..+.+|.+|.||+|+|.| +
T Consensus 5 ~i~~~vNg------------~~~~~~~~~p-~~~Ll~~LR~~~~l-----tgtK~gC~~G~CGaCtV~v~~~~~~~~~~~ 66 (1344)
T PLN00192 5 SLVFAVNG------------ERFELSSVDP-STTLLEFLRTQTPF-----KSVKLGCGEGGCGACVVLLSKYDPVLDQVE 66 (1344)
T ss_pred eEEEEECC------------EEEEeccCCC-CCcHHHHHHHhhCC-----CCcCCCCCCCcCCCcEEEEeeccccccCcC
Confidence 48899988 66888 5777 8999999996 342 2577899999999999999 6
Q ss_pred CEEeccccccccCCCC-CceEEccCCC----chhhhhhhhccchhhhhcc
Q 045926 127 GTNTVACLKPIDGDTS-KPTIITPLPH----MFVIKDLVVDLTNFYQQYK 171 (302)
Q Consensus 127 G~~~laC~t~v~~~~~-~~~~Iepl~~----~~vikDLvvD~~~~~~~~~ 171 (302)
|+++.||.+++-...| +.+|||.|.+ +-.++.-+++.+.+-+.|.
T Consensus 67 ~~~v~sCl~~~~~~~g~~i~TvEgl~~~~~~lhpvq~a~~~~~~~QCGfC 116 (1344)
T PLN00192 67 DFTVSSCLTLLCSVNGCSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFC 116 (1344)
T ss_pred CcEEehHHHHHHHhCCCEEEeecCcCCCCCCCCHHHHHHHHcCCCccCCC
Confidence 8999999999987655 4679999973 3346666778887766554
No 61
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=98.17 E-value=3.3e-06 Score=63.24 Aligned_cols=41 Identities=29% Similarity=0.606 Sum_probs=33.0
Q ss_pred eEEEEecCCCchh-HHHHHHHc-ccccCCCcccccCCCCCccCccEEEEC
Q 045926 79 QSYHVDLSECGPM-VLDALQKI-KAETDSSLSYRRSCREGICGSCAMNIG 126 (302)
Q Consensus 79 ~~y~v~~~~~g~t-vLdal~~i-~~~~dptL~~~~~C~~g~CG~C~V~Vn 126 (302)
+.++|++.+ |.| ||+||++. +. ....+|+.|.||+|.|.|.
T Consensus 6 ~~~~~~~~~-~~~~ll~~~~~~~gi------~i~~~C~~g~Cg~C~v~v~ 48 (78)
T PF00111_consen 6 KGVTVEVPP-GETLLLDALERAGGI------GIPYSCGGGGCGTCRVRVL 48 (78)
T ss_dssp EEEEEEEET-TSBBHHHHHHHTTTT------TSTTSSSSSSSSTTEEEEE
T ss_pred eEEEEEeCC-CccHHHHHHHHcCCC------CcccCCCCCccCCcEEEEe
Confidence 447777777 788 99999987 42 3557899999999999985
No 62
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=98.17 E-value=1.7e-06 Score=85.81 Aligned_cols=73 Identities=23% Similarity=0.594 Sum_probs=51.5
Q ss_pred cCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHH
Q 045926 204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAI 283 (302)
Q Consensus 204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I 283 (302)
.||+||.|+.+||++. -|.-+ +++. .. ++.+++. .+ .+..|..||.|..+||.+|++..++
T Consensus 366 sCi~C~~C~d~CP~~L-------lp~ql---~~~a-~~-~~~~e~~------~~-~l~dCIECg~Ca~vCPs~iplvq~~ 426 (529)
T COG4656 366 SCIRCSLCADACPVNL-------LPQQL---YWFA-KG-EQHDEEE------EH-NLLDCIECGACAYVCPSNIPLVQYF 426 (529)
T ss_pred ccccHHHHHHhCcccc-------CHHHh---hHHh-hh-hhhhHHH------HH-HhhhhhhhCcchhcCCCCCCHHHHH
Confidence 7999999999999865 34333 2221 11 1111111 12 5778999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 045926 284 HKMKTKHMLSQP 295 (302)
Q Consensus 284 ~~lR~~l~~~~~ 295 (302)
...+..+.....
T Consensus 427 r~~Ka~i~~~~~ 438 (529)
T COG4656 427 RQEKAEILAQRQ 438 (529)
T ss_pred HHHHHHHHHhch
Confidence 988887766543
No 63
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=98.16 E-value=4.9e-06 Score=63.91 Aligned_cols=42 Identities=31% Similarity=0.619 Sum_probs=32.1
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT 128 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~ 128 (302)
+.+++.+.|.||||||++.|. ...++|+.|.||+|.+++ .|.
T Consensus 11 ~~~~~~~~~~tlL~a~~~~gi------~~p~~Cr~G~Cg~C~~~~~sG~ 53 (84)
T PRK10713 11 TQLLCQDEHPSLLAALESHNV------AVEYQCREGYCGSCRTRLVAGQ 53 (84)
T ss_pred cEEEecCCCCcHHHHHHHcCC------CCCCCCCCeECCCCEeEEEeCe
Confidence 345554425899999999874 367789999999999986 553
No 64
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=98.12 E-value=2.9e-06 Score=93.99 Aligned_cols=94 Identities=18% Similarity=0.324 Sum_probs=72.2
Q ss_pred EEEEEEecCCCCCCCCCceeEE-EEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEEC----------C
Q 045926 60 KEFRIYRWNPDRPDSKPFLQSY-HVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIG----------G 127 (302)
Q Consensus 60 ~~~~I~r~~p~~~~~~~~~~~y-~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~Vn----------G 127 (302)
++|.|++ +.+ .+++++ ++||||.|++ ++. -..+.+|.+|.||+|+|.|| |
T Consensus 3 ~~~~~Ng------------~~~~~~~~~~-~~~ll~~LR~~~~l-----~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~ 64 (1330)
T TIGR02969 3 LLFYVNG------------RKVVEKNVDP-ETMLLPYLRKKLRL-----TGTKYGCGGGGCGACTVMISRYNPSTKSIRH 64 (1330)
T ss_pred EEEEECC------------EEEEeccCCC-CCcHHHHHHhhcCC-----CCCCCCcCCCCCCCcEEEECCccccccccCC
Confidence 6788888 455 346667 8999999996 443 25788999999999999998 5
Q ss_pred EEeccccccccCCCC-CceEEccCCC----chhhhhhhhccchhhhhcc
Q 045926 128 TNTVACLKPIDGDTS-KPTIITPLPH----MFVIKDLVVDLTNFYQQYK 171 (302)
Q Consensus 128 ~~~laC~t~v~~~~~-~~~~Iepl~~----~~vikDLvvD~~~~~~~~~ 171 (302)
+++.||.+++....| +.+|||.|.+ +..++.-.+|.+.+-+.|.
T Consensus 65 ~~v~sCl~~~~~~~g~~v~TvEgl~~~~~~l~pvq~a~~~~~~~QCGfC 113 (1330)
T TIGR02969 65 HPVNACLTPICSLYGAAVTTVEGIGSTRTRLHPVQERIAKCHGTQCGFC 113 (1330)
T ss_pred cEEehhHHHHHHhCCCEEEecCCcCCCCCCCCHHHHHHHHcCCCcCCCC
Confidence 899999999987655 4679999963 3345666678877766554
No 65
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.11 E-value=5.5e-07 Score=62.53 Aligned_cols=50 Identities=28% Similarity=0.524 Sum_probs=20.4
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP 274 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP 274 (302)
+.+.++|++||.|+.+||.... .. ...... .... ..+.|++||.|+.+||
T Consensus 3 ~id~~~C~~C~~C~~~CP~~~~------------~~---~~~~~~----------~~~~-~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 3 VIDEDKCIGCGRCVKVCPADNA------------IA---IDDGEK----------KVEI-DPERCIGCGACVEVCP 52 (52)
T ss_dssp ---TT------TTGGG-TT--------------------EEE-SS----------SEEE--TTT--TTSHHHHH-T
T ss_pred ccCcccCcCCcChHHHccchhH------------HH---hhccCC----------CeEe-CcccccccChhhhhCc
Confidence 4567899999999999997210 00 011000 0012 4679999999999999
No 66
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=98.10 E-value=3e-06 Score=81.44 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=51.3
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC--
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK-- 275 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~-- 275 (302)
..+.+..|..|+.|...||+..... + +.+.++..+.. .++.|.+||.|...||.
T Consensus 9 ~~R~l~iC~~C~~C~~~CpvfPa~~-----~-------------~~~~~~~d~~~------la~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 9 AKRVLNLCNSCGYCTGLCAVFPAAQ-----G-------------RPDLTRGDLRH------LAHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred HHHHhHhCcCcCCccccCCCccccc-----c-------------ccccCHHHHHH------HHHHCcCcccccccCcCCC
Confidence 3445678999999999999875211 0 00001111211 46799999999999999
Q ss_pred ----CCCHHHHHHHHHHHHhhc
Q 045926 276 ----GLDPADAIHKMKTKHMLS 293 (302)
Q Consensus 276 ----gI~~~~~I~~lR~~l~~~ 293 (302)
++++.+++.++|....++
T Consensus 65 PHef~v~~p~lma~~R~~~~~~ 86 (372)
T TIGR02484 65 PHAFAINLPATLADVRRASYAE 86 (372)
T ss_pred CccccCCHHHHHHHHHHHHHHh
Confidence 779999999999877554
No 67
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=98.10 E-value=8.1e-06 Score=65.90 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=39.6
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEE
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNI 125 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~V 125 (302)
.+.+.+.+|.|.. ..+++.+ |.||||||++.+.. +..+|+ .|.||+|.|.|
T Consensus 3 ~~~~~~~~~~p~~---------~~~~~~~-g~tLL~a~~~~gi~------i~~~CgG~G~CgtC~v~V 54 (110)
T TIGR02007 3 IVFLPHEDLCPEG---------AVVEAKP-GETILDVALDNGIE------IEHACEKSCACTTCHCIV 54 (110)
T ss_pred EEEEeCcccCCCC---------eEEEECC-CChHHHHHHHcCCC------ccccCCCCceeCCCEEEE
Confidence 4566667788766 5677777 99999999998732 445798 69999999988
No 68
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=98.07 E-value=7.6e-08 Score=67.49 Aligned_cols=54 Identities=24% Similarity=0.570 Sum_probs=27.6
Q ss_pred cCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
+||.||+|+.+||......... ...... ....... ..+.|++||.|+.+||+++
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~--------------~~~~~~-----~~~~~~~-~~~~C~~Cg~C~~~CP~~A 54 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDED--------------GGKKVV-----DKDNERR-NAEKCIGCGACVKACPTGA 54 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETT--------------TTCEEC-----SECCEST-TGGG--TTCHHHHHSTTT-
T ss_pred CCCCcchHHHHCCccCeEccCc--------------cccccc-----cccccCC-CCCccccHhHHHHHcchhh
Confidence 6999999999999765311000 000000 0000001 3468999999999999985
No 69
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=98.07 E-value=3.9e-07 Score=67.60 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=19.9
Q ss_pred ccccCcccccccccCCCCCCH
Q 045926 259 KLYRCRAIKNCTATCPKGLDP 279 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~~ 279 (302)
+...|+.||+|+.+||++||+
T Consensus 48 ~~~~CVgCgrCv~~CP~~Idi 68 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAGIDI 68 (69)
T ss_pred CCccCCCcChHhhhcCCCCCc
Confidence 788999999999999999986
No 70
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=98.05 E-value=1.3e-05 Score=63.17 Aligned_cols=38 Identities=26% Similarity=0.607 Sum_probs=31.4
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI 125 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V 125 (302)
..+++.+ |.||||||.+.|.. ...+|+.|.||+|.|+|
T Consensus 15 ~~~~~~~-g~tLLda~~~~Gi~------i~~~C~~G~Cg~C~v~v 52 (97)
T TIGR02008 15 ETIECPD-DQYILDAAEEAGID------LPYSCRAGACSTCAGKV 52 (97)
T ss_pred EEEEECC-CCcHHHHHHHcCCC------CCcCCCCccCCCCceEE
Confidence 4566667 89999999998742 45679999999999988
No 71
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.03 E-value=3.8e-07 Score=63.44 Aligned_cols=52 Identities=23% Similarity=0.595 Sum_probs=24.5
Q ss_pred cCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
+||.||.|+.+||...+..... .+... + ..+ .. ..+.|++||.|+.+||+++
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~-------------~~~~~-----~-~~~--~~-~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEE-------------ENEEG-----K-PKM--VI-DPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEET-------------TT-SS-----S-TTS--EE-TGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccCcccc-------------cccCC-----c-eEE--EE-echhCcCcChhhhhCcCcC
Confidence 5999999999999654311000 00000 0 001 12 4678999999999999985
No 72
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=98.01 E-value=6.7e-07 Score=64.31 Aligned_cols=52 Identities=23% Similarity=0.514 Sum_probs=25.3
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC-CC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK-GL 277 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~-gI 277 (302)
+.++||.||.|+.+||..... ++. .+.. . + + .. ....|+.||.|+.+||+ ++
T Consensus 4 d~~~Ci~Cg~C~~~Cp~~~~~------------~i~--~~~~-~----~---~--~v-~~~~C~GCg~C~~~CPv~~A 56 (59)
T PF14697_consen 4 DEDKCIGCGKCVRACPDGAID------------AIE--VDEG-K----K---V--PV-NPDKCIGCGLCVKVCPVKDA 56 (59)
T ss_dssp -TTT----SCCCHHCCCCS-S-------------EC--CTTT-T----S---S--EC-E-TT--S-SCCCCCSSSTTS
T ss_pred CcccccChhhHHhHcCcccee------------eEE--ecCC-e----e---E--Ee-ccccCcCcCcccccCCCccC
Confidence 457899999999999963310 100 0110 0 0 0 12 34689999999999996 65
No 73
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=97.98 E-value=2e-06 Score=75.53 Aligned_cols=63 Identities=19% Similarity=0.402 Sum_probs=36.8
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
...+.++||.||.|+.+||...... .+.. +.... ......+ .. ....|+.||.|+++||+++
T Consensus 57 i~~~~~kCi~Cg~C~~aCP~~ai~~-----------~~~~--~~~~~--~~~~~~~--~i-d~~~Ci~Cg~Cv~aCP~~A 118 (183)
T TIGR00403 57 IHFEFDKCIACEVCVRVCPINLPVV-----------DWEF--NKAIK--KKQLKNY--SI-DFGVCIFCGNCVEYCPTNC 118 (183)
T ss_pred EEeCcccCcCcCChhhhCCCCcccc-----------cccc--ccccc--cccccee--ec-CcccccCcCchhhhcCCCC
Confidence 3456789999999999999753100 0000 00000 0000001 11 3468999999999999876
Q ss_pred C
Q 045926 278 D 278 (302)
Q Consensus 278 ~ 278 (302)
-
T Consensus 119 I 119 (183)
T TIGR00403 119 L 119 (183)
T ss_pred e
Confidence 4
No 74
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=97.90 E-value=1.3e-06 Score=74.49 Aligned_cols=101 Identities=21% Similarity=0.416 Sum_probs=56.5
Q ss_pred hhhhhhhccchhhhhccccc-cccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHH
Q 045926 155 VIKDLVVDLTNFYQQYKSIE-PWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLH 233 (302)
Q Consensus 155 vikDLvvD~~~~~~~~~~~~-~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~ 233 (302)
.++.+.+..++++..-..++ ||- +.+.+ ..++.....+..-.+..+||.|-.|.++||..... +.
T Consensus 66 ~~rGf~itLsh~f~~p~TInYPfE--KgplS--~RFRGehalrRyp~geerCIACklCeavCPaqait----------ie 131 (212)
T KOG3256|consen 66 LIRGFMITLSHTFREPVTINYPFE--KGPLS--PRFRGEHALRRYPSGEERCIACKLCEAVCPAQAIT----------IE 131 (212)
T ss_pred HHHHHHhhHHhhcCCCeeecCccc--cCCCC--cccccchhhhcCCCcchhhhhHHHHHHhCCcccce----------ee
Confidence 55777777777775444443 221 11111 12222233344445678999999999999975421 11
Q ss_pred HHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 234 AYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 234 a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
+....|+ ..|.... +. ....|+.||.|+++||++.-
T Consensus 132 -ae~r~dg-----srRttrY--dI-DmtkCIyCG~CqEaCPvdai 167 (212)
T KOG3256|consen 132 -AEERTDG-----SRRTTRY--DI-DMTKCIYCGFCQEACPVDAI 167 (212)
T ss_pred -ceecCCc-----cccceee--cc-cceeeeeecchhhhCCccce
Confidence 1111111 1122111 22 45689999999999998864
No 75
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=97.83 E-value=1.8e-05 Score=76.54 Aligned_cols=75 Identities=13% Similarity=0.307 Sum_probs=52.0
Q ss_pred HHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926 195 DRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP 274 (302)
Q Consensus 195 ~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP 274 (302)
+.+..+.+..|..|..|...||+.. ... .|.... +..+.. ....|++||.|...||
T Consensus 25 ~~e~~r~~~iC~~Cr~C~~~CpvfP---------~l~---~r~~~~------~~d~~~------~a~~C~~Cg~C~~~CP 80 (389)
T PRK15033 25 EAEVARQMQICNACRYCEGFCAVFP---------AMT---RRLEFG------KADIHY------LANLCHNCGACLHACQ 80 (389)
T ss_pred HHHHHHHhHhCCCCCCccccCCCch---------hhh---hhhcCC------hhhhHH------HHHhCcCcccccccCc
Confidence 3345566789999999999999863 211 111011 011111 3458999999999999
Q ss_pred C------CCCHHHHHHHHHHHHhhc
Q 045926 275 K------GLDPADAIHKMKTKHMLS 293 (302)
Q Consensus 275 ~------gI~~~~~I~~lR~~l~~~ 293 (302)
. +|++.+++.++|....++
T Consensus 81 ~apPhef~i~ip~~l~~~r~~sy~~ 105 (389)
T PRK15033 81 YAPPHEFAVNVPKAMAQVRLETYQE 105 (389)
T ss_pred CCCCcccCCCHHHHHHHHHHHHHHH
Confidence 9 999999999999876543
No 76
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=97.72 E-value=2.3e-05 Score=78.38 Aligned_cols=77 Identities=23% Similarity=0.452 Sum_probs=51.6
Q ss_pred HHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926 195 DRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP 274 (302)
Q Consensus 195 ~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP 274 (302)
+.+......+|..||-|..+||.-. --|.++-.| .++.- ..++. -...|..||+|.++||
T Consensus 392 ~ee~~e~a~kc~~cG~C~~~CP~~l------~i~eam~~A----~~Gd~----~~l~~------l~d~C~~C~rCEq~Cp 451 (772)
T COG1152 392 DEEFMEYARKCTYCGNCMRACPNEL------DIPEAMEYA----AKGDF----SKLED------LHDVCIGCGRCEQVCP 451 (772)
T ss_pred hHHHHHHHHhcccccchhccCCccc------chHHHHHHh----hcCCh----HHHHH------HHHHhhhhhhhhhhCc
Confidence 3444556789999999999999533 123333333 22211 12221 2348999999999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 045926 275 KGLDPADAIHKMKTKHM 291 (302)
Q Consensus 275 ~gI~~~~~I~~lR~~l~ 291 (302)
++|++..+|.+......
T Consensus 452 k~ipi~nm~~~a~~~~~ 468 (772)
T COG1152 452 KNIPILNMIEKAAQKRI 468 (772)
T ss_pred ccCchhhHHHHHHHHhh
Confidence 99999999888775543
No 77
>PRK13984 putative oxidoreductase; Provisional
Probab=97.70 E-value=2.4e-05 Score=80.21 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=30.5
Q ss_pred ccccCcccccccccCCCCCCHHHHHHHHHHHHhhc
Q 045926 259 KLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLS 293 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~ 293 (302)
..+.|+.||.|..+||.++++.+.+..+|+...+.
T Consensus 183 ~~~~C~~Cg~C~~~CP~~~~i~~~~~~i~~~~~~~ 217 (604)
T PRK13984 183 EAARCVECGICTDTCPAHMDIPQYIKAIYKDDLEE 217 (604)
T ss_pred hhhhhcCCCcccccCCCCCCHHHHHHHHHcCCHHH
Confidence 35789999999999999999999999998765544
No 78
>PLN03136 Ferredoxin; Provisional
Probab=97.63 E-value=8.4e-05 Score=63.16 Aligned_cols=38 Identities=37% Similarity=0.617 Sum_probs=31.4
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI 125 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V 125 (302)
..+++.+ |.+||||+++.|.. ...+|+.|.||+|.+.|
T Consensus 66 ~~~~~~~-g~tILdAa~~~Gi~------lp~sCr~G~CGtC~~~l 103 (148)
T PLN03136 66 QEVECEE-DVYVLDAAEEAGID------LPYSCRAGSCSSCAGKV 103 (148)
T ss_pred EEEEeCC-CCcHHHHHHHcCCC------CCcCCCCccCCCCEEEE
Confidence 4566666 89999999998842 55679999999999988
No 79
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=97.63 E-value=0.00018 Score=58.78 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=32.1
Q ss_pred eEEEEecCCCchhHHHHHHHcccccCCCcccccCCCC-CccCccEEEE
Q 045926 79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCRE-GICGSCAMNI 125 (302)
Q Consensus 79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~-g~CG~C~V~V 125 (302)
++..|++.. |.|||+|+++.|.. +...|+. |.||.|.|.|
T Consensus 11 ~~~~v~~~~-G~tLl~a~~~~gi~------i~~~CgG~g~C~tC~V~V 51 (117)
T PLN02593 11 EERTVKAPV-GMSLLEAAHENDIE------LEGACEGSLACSTCHVIV 51 (117)
T ss_pred CEEEEEECC-CCcHHHHHHHcCCC------CCccCCCcceeCCCEEEE
Confidence 446777777 99999999998742 3346984 9999999999
No 80
>PTZ00038 ferredoxin; Provisional
Probab=97.61 E-value=9.8e-05 Score=65.16 Aligned_cols=38 Identities=32% Similarity=0.629 Sum_probs=31.1
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI 125 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V 125 (302)
..+++.+ |.|||||+++.|.. ...+|+.|.||.|.|+|
T Consensus 107 ~~~~v~~-geTILdAae~aGI~------lp~sCr~G~CGtCkvrV 144 (191)
T PTZ00038 107 KVIECDE-DEYILDAAERQGVE------LPYSCRGGSCSTCAAKL 144 (191)
T ss_pred EEEEeCC-CCcHHHHHHHcCCC------CCcCCCCccCCCCEeEE
Confidence 4466666 89999999998842 55679999999999988
No 81
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=97.60 E-value=0.00011 Score=70.50 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=53.2
Q ss_pred cCcccCcccCCCCCcccCCCCcccHHHH---HHHHHHhccCcchhHHHHHHHhhhc-------ccccccCcccccccccC
Q 045926 204 ECILCACCTTSCPSYWWNPEEYLGPAAL---LHAYRWICDSRDELTEERLQALTED-------ERKLYRCRAIKNCTATC 273 (302)
Q Consensus 204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l---~~a~r~~~d~rd~~~~~rl~~~~~~-------~~~~~~C~~Cg~C~~vC 273 (302)
.|+.|..|.. ||.... -|..+ +.+..+ +.-+. ..-++..+... ......|+.||.|...|
T Consensus 294 ~Ct~C~yC~P-CP~gIn------IP~~f~lyN~~~~~--~~~~~-~~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~C 363 (391)
T COG1453 294 PCTGCRYCLP-CPSGIN------IPEIFRLYNLAVAF--DDVDY-AKFRYNMLENGGHWFPGPKGKASDCIECGQCLEKC 363 (391)
T ss_pred CCccccccCc-CCCCCC------hHHHHHHHHHHHhh--ccchh-hHHHHHHHhccCccCCCCcccccccchhhhhhhcC
Confidence 4999999999 998652 23322 222222 11111 12233333221 11357899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC
Q 045926 274 PKGLDPADAIHKMKTKHMLSQP 295 (302)
Q Consensus 274 P~gI~~~~~I~~lR~~l~~~~~ 295 (302)
|.++++.++++++++.+.....
T Consensus 364 Pq~l~Ip~~Lk~v~~~leg~~~ 385 (391)
T COG1453 364 PQHLDIPELLKEVHEELEGEDL 385 (391)
T ss_pred CCcCcHHHHHHHHHHHhcchHH
Confidence 9999999999999988876543
No 82
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=97.58 E-value=1.7e-05 Score=68.25 Aligned_cols=60 Identities=28% Similarity=0.474 Sum_probs=35.2
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.+...||.||.|+.+||....... .....+++. ..... .. ....|+.||.|+.+||.++-
T Consensus 55 ~~~~~Ci~C~~C~~~CP~~ai~~~-----------~~~~~~g~~-----~~~~~--~i-~~~~C~~Cg~Cv~~CP~~Ai 114 (164)
T PRK05888 55 NGEERCIACKLCAAICPADAITIE-----------AAEREDGRR-----RTTRY--DI-NFGRCIFCGFCEEACPTDAI 114 (164)
T ss_pred CCCccCCcccChHHHcCccccccc-----------cccCCCCcc-----cceee--ec-CCCcCcccCcchhhcCcCcc
Confidence 345599999999999996432100 000000100 00000 11 45689999999999998764
No 83
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=97.52 E-value=0.00032 Score=59.26 Aligned_cols=55 Identities=13% Similarity=0.292 Sum_probs=40.3
Q ss_pred ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926 57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG 126 (302)
Q Consensus 57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn 126 (302)
+..|+|.|...|- ..++|++.+ |.|||+||+..+.. .....|. .|.||.|.|.|.
T Consensus 33 ~g~v~I~~~~~dG---------~~~~v~~~~-G~sLLeal~~~~~i-----~i~~~CGG~g~CgtC~V~V~ 88 (143)
T PTZ00490 33 PGKVKVCVKKRDG---------THCDVEVPV-GMSLMHALRDVAKL-----DVEGTCNGCMQCATCHVYLS 88 (143)
T ss_pred CCcEEEEEEcCCC---------CEEEEEECC-CccHHHHHHHcCCC-----CccccCCCCCEeCCCEEEEC
Confidence 4468888886442 347888888 99999999985422 1334576 799999999994
No 84
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=97.52 E-value=0.00023 Score=56.75 Aligned_cols=39 Identities=26% Similarity=0.589 Sum_probs=30.6
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG 126 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn 126 (302)
+....+. |.||||++.+.|.. ...+|+.|.||+|.|+|.
T Consensus 15 ~~~~~~~-g~tiLe~a~~~gi~------i~~~C~~g~C~TC~v~v~ 53 (102)
T COG0633 15 VTEAVNE-GETLLEAAERNGIP------IEYACRGGACGTCRVKVL 53 (102)
T ss_pred eEEeccC-CcHHHHHHHHCCCc------ceecCCCCccCccEEEEe
Confidence 3344444 89999999998742 556799999999999884
No 85
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=97.48 E-value=3e-05 Score=67.12 Aligned_cols=61 Identities=25% Similarity=0.443 Sum_probs=35.5
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.+...|+.||.|+.+||+.... ..+++..+.+. .++..+ .. ....|+.||.|+.+||.++-
T Consensus 56 ~~~~~Ci~Cg~C~~aCP~~~~~-----------~~~~~~~~~~~----~~~~~~--~i-d~~~C~~Cg~C~~~CP~~AI 116 (167)
T CHL00014 56 FEFDKCIACEVCVRVCPIDLPV-----------VDWKLETDIRK----KRLLNY--SI-DFGVCIFCGNCVEYCPTNCL 116 (167)
T ss_pred eccccCCCcCcHHHhCCCCCcc-----------ccccccccccc----cccccc--cC-CCCcCcCccchHhhcCcCce
Confidence 4567899999999999975310 01111001000 011001 11 33579999999999999753
No 86
>PLN02906 xanthine dehydrogenase
Probab=97.43 E-value=0.00011 Score=81.76 Aligned_cols=77 Identities=17% Similarity=0.407 Sum_probs=59.5
Q ss_pred hhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC------C----EEeccccccccCCCC-CceEEccCCC----ch
Q 045926 90 PMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG------G----TNTVACLKPIDGDTS-KPTIITPLPH----MF 154 (302)
Q Consensus 90 ~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn------G----~~~laC~t~v~~~~~-~~~~Iepl~~----~~ 154 (302)
+||||.|++++. -..+.+|.+|.||+|+|.|| | +++.||.+++....| +.+|||.|.+ +.
T Consensus 2 ~~ll~~LR~~~l-----~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~ 76 (1319)
T PLN02906 2 QTLLEYLRDLGL-----TGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGLH 76 (1319)
T ss_pred CcHHHHHHhCCC-----CCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCCC
Confidence 689999998553 35788999999999999999 5 688999999987655 4568999963 33
Q ss_pred hhhhhhhccchhhhhcc
Q 045926 155 VIKDLVVDLTNFYQQYK 171 (302)
Q Consensus 155 vikDLvvD~~~~~~~~~ 171 (302)
.++.-.++.+.+-+.|.
T Consensus 77 ~vq~a~~~~~~~QCG~C 93 (1319)
T PLN02906 77 PVQEALASMHGSQCGFC 93 (1319)
T ss_pred HHHHHHHHcCCCcCCCC
Confidence 45566667777666553
No 87
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=97.42 E-value=3.8e-05 Score=67.95 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=35.2
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
.+.+.++||.||+|+.+||.... .. ..+.. . .. ....|+.||.|+.+||+++
T Consensus 109 ~~id~~~Ci~Cg~Cv~aCp~~ai---------------~~--~~~~~------~----~v-~~~~C~~Cg~Cv~vCP~~A 160 (191)
T PRK05113 109 AFIDEDNCIGCTKCIQACPVDAI---------------VG--ATKAM------H----TV-ISDLCTGCDLCVAPCPTDC 160 (191)
T ss_pred eEEeCCcCCCCChhhhhCCHhhh---------------ec--ccCCc------e----ee-cCCcCCchHHHHHHcCcCc
Confidence 34567899999999999994221 00 11100 0 01 2358999999999999987
Q ss_pred C
Q 045926 278 D 278 (302)
Q Consensus 278 ~ 278 (302)
-
T Consensus 161 I 161 (191)
T PRK05113 161 I 161 (191)
T ss_pred e
Confidence 4
No 88
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=97.41 E-value=2e-05 Score=64.23 Aligned_cols=58 Identities=24% Similarity=0.425 Sum_probs=34.4
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.++|+.||.|+.+||+...... .+. ..++.. ..... .. ....|+.||.|+.+||.++-
T Consensus 42 ~~~Ci~C~~C~~~CP~~ai~~~----------~~~-~~~~~~-----~~~~~--~~-~~~~C~~Cg~Cv~~CP~~al 99 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADAIRVV----------PAE-GEDGKR-----RLKFY--QI-NFGRCIFCGLCEEACPTDAI 99 (122)
T ss_pred cCcCcCcchhhhhcCHhHeeee----------eec-cCCCce-----ecccc--eE-CcccCCCCCchhhhCCCccc
Confidence 4889999999999996432100 000 000000 00001 11 34579999999999999854
No 89
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=97.39 E-value=3.1e-05 Score=73.31 Aligned_cols=63 Identities=25% Similarity=0.547 Sum_probs=36.3
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
..+..+||.|+.|..+||.... ...++...+++.. ..+...+ .. ....|..||.|+.+||+++
T Consensus 243 ~id~~~Ci~C~~C~~~CP~~ai-----------~~~~~~~~~~~~~--~~~~~~~--~~-d~~~C~gCg~C~~~CP~~A 305 (312)
T PRK14028 243 VIDHSKCIMCRKCWLYCPDDAI-----------IEAWREAEGPRGR--KFRMKMI--DF-DYQYCKGCGVCAEVCPTGA 305 (312)
T ss_pred EECcccCcCcccccccCChhhh-----------hcccccccCcccc--cccceee--cC-CcccCcCcCchhhhCCHhh
Confidence 3467899999999999996531 1111111111100 0000001 11 3468999999999999864
No 90
>PRK02651 photosystem I subunit VII; Provisional
Probab=97.38 E-value=2.9e-05 Score=58.78 Aligned_cols=56 Identities=21% Similarity=0.517 Sum_probs=34.2
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.++|+.||.|+.+||......... +.... ..+. . .. ....|+.||.|+.+||.++-
T Consensus 8 ~~~Ci~C~~C~~~CP~~~i~~~~~--------------~~~~~---~~~~-~--~~-~~~~C~~Cg~C~~~CP~~ai 63 (81)
T PRK02651 8 YDTCIGCTQCVRACPLDVLEMVPW--------------DGCKA---GQIA-S--SP-RTEDCVGCKRCETACPTDFL 63 (81)
T ss_pred cccCCCcchHHHHCCccceecccc--------------ccccc---Cccc-c--cC-CCCcCCChhhhhhhcCCCce
Confidence 478999999999999643211000 00000 0000 0 11 34689999999999999864
No 91
>CHL00065 psaC photosystem I subunit VII
Probab=97.38 E-value=2.3e-05 Score=59.57 Aligned_cols=57 Identities=21% Similarity=0.491 Sum_probs=34.1
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
...+|+.||.|+.+||.....-.. .+.... .... ... ....|+.||.|+.+||.++-
T Consensus 7 ~~~~Ci~Cg~C~~~CP~~~i~~~~--------------~~~~~~---~~~~---~~~-~~~~C~~C~~C~~~CP~~Ai 63 (81)
T CHL00065 7 IYDTCIGCTQCVRACPTDVLEMIP--------------WDGCKA---KQIA---SAP-RTEDCVGCKRCESACPTDFL 63 (81)
T ss_pred ccccCCChhHHHHHCCccchhhee--------------cccccc---cccc---ccC-CCCcCCChhhhhhhcCcccc
Confidence 356899999999999954311000 000000 0000 011 33589999999999999874
No 92
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=97.37 E-value=3.5e-05 Score=62.94 Aligned_cols=54 Identities=26% Similarity=0.567 Sum_probs=35.9
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
...+..+|+.||.|+.+||..... ...+.. . + .. ....|+.||.|+.+||.++
T Consensus 37 i~i~~~~Ci~C~~C~~~CP~~ai~---------------~~~~~~------~---~--~i-~~~~C~~Cg~Cv~~CP~~A 89 (120)
T PRK08348 37 ILYDVDKCVGCRMCVTVCPAGVFV---------------YLPEIR------K---V--AL-WTGRCVFCGQCVDVCPTGA 89 (120)
T ss_pred EEECcccCcCcccHHHHCCccceE---------------cccccc------c---e--Ee-cCCcCcChhhhHHhCCcCc
Confidence 445678999999999999964310 000000 0 0 11 2357999999999999887
Q ss_pred C
Q 045926 278 D 278 (302)
Q Consensus 278 ~ 278 (302)
-
T Consensus 90 i 90 (120)
T PRK08348 90 L 90 (120)
T ss_pred E
Confidence 5
No 93
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=97.36 E-value=3.4e-05 Score=67.69 Aligned_cols=56 Identities=27% Similarity=0.528 Sum_probs=35.3
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.+...|++||.|+.+||+...... .+.... .+ .+ .. ....|+.||.|+.+||+++-
T Consensus 35 ~d~~~Ci~Cg~Cv~aCP~~Ai~~~---------------~~~~~~---~~--~~--~~-~~~~C~~Cg~C~~~CPt~AI 90 (181)
T PRK08222 35 LMPSQCIACGACTCACPANALTIQ---------------TDDQQN---SR--TW--QL-YLGRCIYCGRCEEVCPTRAI 90 (181)
T ss_pred eChhhCcchhHHHHhCCccceEcc---------------cccccC---cc--ce--ee-ccCcCcCCCCcccccCcCeE
Confidence 456789999999999997432100 000000 00 01 11 34589999999999998854
No 94
>PRK05713 hypothetical protein; Provisional
Probab=97.34 E-value=0.00028 Score=66.61 Aligned_cols=52 Identities=29% Similarity=0.512 Sum_probs=40.7
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-----------------EeccccccccC
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-----------------NTVACLKPIDG 139 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-----------------~~laC~t~v~~ 139 (302)
.+|++.+ |.|||||+.+.|.. ...+|+.|.||+|.|.| .|. .+|+|.+.+..
T Consensus 9 ~~~~~~~-g~tlL~a~~~~gi~------~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~ 78 (312)
T PRK05713 9 RRWSVPA-GSNLLDALNAAGVA------VPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVG 78 (312)
T ss_pred eEEEECC-CCcHHHHHHHcCCC------CCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECC
Confidence 4567767 89999999998742 34569999999999998 342 35899998874
No 95
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=97.34 E-value=1.8e-05 Score=61.13 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=17.5
Q ss_pred hccccccCcccCcccCCCCCc
Q 045926 198 KLDGLYECILCACCTTSCPSY 218 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~ 218 (302)
...+..+|+.||.|+.+||..
T Consensus 16 ~~i~~~~Ci~C~~Cv~~CP~~ 36 (91)
T TIGR02936 16 TSIDQEKCIGCGRCYKVCGRD 36 (91)
T ss_pred EEECHhHCCCcchHHHHcChh
Confidence 345678899999999999954
No 96
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=97.31 E-value=0.00043 Score=65.87 Aligned_cols=38 Identities=32% Similarity=0.712 Sum_probs=30.5
Q ss_pred EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926 83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG 127 (302)
Q Consensus 83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG 127 (302)
+.+++ |.|||+||++.|. ....+|+.|+||+|.+.| .|
T Consensus 260 ~~~~~-~~~lL~~~~~~gi------~~~~~C~~G~Cg~C~~~~~~G 298 (332)
T PRK10684 260 FYAPV-GTTLLEALESNKV------PVVAACRAGVCGCCKTKVVSG 298 (332)
T ss_pred EEeCC-CChHHHHHHHcCC------CccCCCCCcCCCCCEEEEecC
Confidence 34455 8999999999874 256789999999999987 44
No 97
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=97.30 E-value=0.00059 Score=65.31 Aligned_cols=52 Identities=25% Similarity=0.587 Sum_probs=39.7
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-------------------EeccccccccC
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-------------------NTVACLKPIDG 139 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-------------------~~laC~t~v~~ 139 (302)
..+++.+ |.|||||+++.|. ....+|+.|.||+|.+.| .|. .+|+|.+.+..
T Consensus 15 ~~~~~~~-g~tlL~a~~~~g~------~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~ 86 (340)
T PRK11872 15 LFFPVGK-DELLLDAALRNGI------NLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVKS 86 (340)
T ss_pred EEEEeCC-CCcHHHHHHHcCC------CCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeCEECC
Confidence 4556666 8999999999873 356679999999999987 332 34899887753
No 98
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=97.29 E-value=0.00051 Score=65.39 Aligned_cols=52 Identities=21% Similarity=0.444 Sum_probs=39.6
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-------------------EeccccccccC
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-------------------NTVACLKPIDG 139 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-------------------~~laC~t~v~~ 139 (302)
..+++.+ |.||||||++.|. ....+|+.|.||+|.|.| .|. .+|+|.+.+..
T Consensus 12 ~~~~~~~-g~tlL~a~~~~gi------~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~ 83 (339)
T PRK07609 12 RQFTAEP-DETILDAALRQGI------HLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPLS 83 (339)
T ss_pred eEEEeCC-CCcHHHHHHHcCC------CCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEECC
Confidence 3456666 8999999999874 256679999999999986 331 24899888764
No 99
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=97.26 E-value=5.5e-05 Score=60.19 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=36.8
Q ss_pred HhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926 196 RKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK 275 (302)
Q Consensus 196 ~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~ 275 (302)
.....+.+.|+.||.|+.+||+.... +..++.... ... . ... ....|+.||.|+.+||.
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~---------------~~~~~~~~~-~~~---~-~~i-~~~~C~~C~~C~~~CP~ 67 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLA---------------MRIDPHAVL-GKM---I-KVV-HPESCIGCRECELHCPD 67 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhc---------------ccccccccc-Cce---e-eEe-CCccCCCcCcchhhCCh
Confidence 34445778999999999999964311 000000000 000 0 011 23589999999999997
Q ss_pred CCC
Q 045926 276 GLD 278 (302)
Q Consensus 276 gI~ 278 (302)
++-
T Consensus 68 ~AI 70 (103)
T PRK09626 68 FAI 70 (103)
T ss_pred hhE
Confidence 654
No 100
>PRK06273 ferredoxin; Provisional
Probab=97.26 E-value=2.9e-05 Score=67.21 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=35.4
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
.+...|+.||.|..+||....... ..+|.... .+... ... . .. ....|+.||.|..+||.++
T Consensus 46 id~~~CigCg~C~~aCP~~AI~~~-~~ep~~~~-------~~~~~---~~~--~--~I-d~~kCi~Cg~C~~aCP~~A 107 (165)
T PRK06273 46 VFEELCIGCGGCANVCPTKAIEMI-PVEPVKIT-------EGYVK---TKI--P--KI-DYEKCVYCLYCHDFCPVFA 107 (165)
T ss_pred ECchhCcChhHHHHhcCccceeee-cccccchh-------ccccc---ccc--e--ec-ccccCcCCCCcchhCCHhh
Confidence 355689999999999997542100 00110000 00000 000 0 11 3468999999999999985
No 101
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=97.26 E-value=3.4e-05 Score=58.41 Aligned_cols=58 Identities=22% Similarity=0.497 Sum_probs=34.9
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.....|+.||.|+.+||+..+... +. ++... ..+. . .. ....|+.||.|.++||+++-
T Consensus 5 ~~~~~Ci~C~~Cv~~CP~~~i~~~----~~----------~~~~~---~~~~-~--~~-~~~~C~~Cg~C~~~CP~~ai 62 (80)
T TIGR03048 5 KIYDTCIGCTQCVRACPTDVLEMV----PW----------DGCKA---GQIA-S--AP-RTEDCVGCKRCESACPTDFL 62 (80)
T ss_pred ecCCcCcCcchHHHHCCccceeee----cc----------ccccc---cccc-C--cC-CCCcCcChhHHHHhcCcccC
Confidence 446789999999999996432100 00 00000 0000 0 11 23589999999999999874
No 102
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=97.25 E-value=0.00013 Score=56.34 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=34.8
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
.+..+||.||.|+.+||+.... ...+. +. .... .. ....|+.||.|..+||.++
T Consensus 26 ~~~~~Ci~Cg~C~~~CP~~ai~---------------~~~~~-~~-----~~~~--~~-~~~~C~~C~~C~~~Cp~~a 79 (99)
T COG1145 26 IDAEKCIGCGLCVKVCPTGAIE---------------LIEEG-LL-----LPEV--VI-DPDLCVLCGACLKVCPVDA 79 (99)
T ss_pred eCccccCCCCCchhhCCHHHhh---------------ccccc-Cc-----cceE--EE-ccccCccccchHhhCCcCC
Confidence 4456799999999999975311 00000 00 0000 11 3468999999999999998
No 103
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=97.23 E-value=0.00072 Score=64.72 Aligned_cols=38 Identities=32% Similarity=0.711 Sum_probs=30.4
Q ss_pred EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926 83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG 127 (302)
Q Consensus 83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG 127 (302)
+++++ |.|||||+.+.|. ....+|+.|+||+|.+.+ .|
T Consensus 277 ~~~~~-~~slL~~~~~~gi------~~~~~C~~G~Cg~C~~~~~~G 315 (352)
T TIGR02160 277 SSLSR-DESVLDAALRARP------DLPFACKGGVCGTCRAKVLEG 315 (352)
T ss_pred EecCC-CCcHHHHHHHcCC------CCcCCCCCccCCCCEEEEecc
Confidence 34555 8999999999874 256689999999999986 44
No 104
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.20 E-value=6.3e-05 Score=82.59 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=38.5
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhH--HHHHHHhhhcccccccCcccccccccCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELT--EERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~--~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
.+..+||.||.|+.+||+.... ..++++..+..+-+. .+.++... ..... ..-.. ..+.|+.||.|+.+||.+
T Consensus 680 ~~~~~Ci~Cg~C~~vCP~~ai~-~~~~~~~~~~~ap~~-~~~~~~~~~~~~~~~-~~i~i-~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 680 WVPDNCIQCNQCAFVCPHAAIR-PKLADEEELENAPAG-FKSLDAKGKELEGMK-FRIQI-SPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred eccccCCCccchHHhcChhhcc-ccccchhhhhcCccc-chhhhhhcccccccc-eeEEe-ccccCcCccchhhhcCCC
Confidence 4567899999999999987542 122233222111000 00000000 00000 00012 467999999999999997
No 105
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=97.20 E-value=6.1e-05 Score=62.88 Aligned_cols=51 Identities=24% Similarity=0.466 Sum_probs=34.3
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
..+.+.|+.||.|+.+||..... ..++. . . .. ....|+.||.|+.+||.++
T Consensus 55 ~~d~~~Ci~C~~C~~~CP~~ai~----------------~~~~~-------~--~--~i-~~~~C~~Cg~Cv~vCP~~a 105 (133)
T PRK09625 55 VHNNEICINCFNCWVYCPDAAIL----------------SRDKK-------L--K--GV-DYSHCKGCGVCVEVCPTNP 105 (133)
T ss_pred EEehhHCcChhhHHHhCCHhheE----------------ecCCc-------e--E--Ee-CcCcCcChhHHHHHCCcCc
Confidence 45678999999999999943210 00100 0 0 01 2357999999999999996
No 106
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=97.20 E-value=9e-05 Score=72.00 Aligned_cols=77 Identities=16% Similarity=0.338 Sum_probs=42.2
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHH-HhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQ-ALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~-~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.+..+|+.||+|+.+||...... ..+...++.. .++. ...... ....|+.||.|+.+||.++-
T Consensus 4 id~~kCi~Cg~Cv~~CP~~ai~~-----------~~~~~~~~~~----~~~~~~~~~~i-d~~~C~~Cg~Cv~~CP~~Ai 67 (374)
T TIGR02512 4 RDMSKCIGCGRCVRACTNVQIVG-----------ALGFLNRGGK----TEVAPKFGRLL-DESNCIGCGQCSLVCPVGAI 67 (374)
T ss_pred echhhCCcChHhhhhCCHhhccc-----------cccccccCCc----ccccccccccc-CcccCcCccCHHHhCCCChh
Confidence 45678999999999999754210 0000000000 0000 000011 34589999999999999876
Q ss_pred HH-HHHHHHHHHHhh
Q 045926 279 PA-DAIHKMKTKHML 292 (302)
Q Consensus 279 ~~-~~I~~lR~~l~~ 292 (302)
.. ..+..+.+.+.+
T Consensus 68 ~~~~~~~~v~~~l~~ 82 (374)
T TIGR02512 68 TEKDHVDRVLKALAD 82 (374)
T ss_pred hhhccHHHHHHHhcc
Confidence 32 334444444433
No 107
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=97.18 E-value=0.00072 Score=66.26 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=47.5
Q ss_pred ccceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCC-CccCccEEEEC-CE----
Q 045926 55 VKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCRE-GICGSCAMNIG-GT---- 128 (302)
Q Consensus 55 ~~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~-g~CG~C~V~Vn-G~---- 128 (302)
|++.+++|.+.. .+ .+.+++.+ |.|||+|+++.|.. ...+|+. |.||+|.|.|- |.
T Consensus 27 ~~~~~v~v~~~~--~~---------~~~~~~~~-g~tlL~a~~~~gi~------i~~~C~g~G~Cg~C~v~v~~G~~~~~ 88 (405)
T TIGR01941 27 VSSGDITIGIND--DE---------EKSITVPA-GGKLLNTLASNGIF------ISSACGGGGTCGQCRVRVVEGGGEIL 88 (405)
T ss_pred cccccEEEEEcC--CC---------ceEEEECC-CChHHHHHHHcCCC------CcccCCCccEeCCCEEEEccCCcCCC
Confidence 555667776632 22 25677777 99999999998742 3446985 89999999983 41
Q ss_pred ---------------EeccccccccC
Q 045926 129 ---------------NTVACLKPIDG 139 (302)
Q Consensus 129 ---------------~~laC~t~v~~ 139 (302)
.+|||.+.+..
T Consensus 89 ~~~~~~L~~~~~~~g~rLaCq~~~~~ 114 (405)
T TIGR01941 89 PTELSHFSKREAKEGWRLSCQVKVKQ 114 (405)
T ss_pred hhhhhhcCHhHhcCCcEEEeeCEECC
Confidence 26899988764
No 108
>PLN00071 photosystem I subunit VII; Provisional
Probab=97.15 E-value=5.4e-05 Score=57.37 Aligned_cols=57 Identities=21% Similarity=0.483 Sum_probs=33.9
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
...+|+.||.|+.+||....... . .++.. ...+. . .. ....|+.||.|+.+||.++-
T Consensus 7 ~~~~C~~C~~C~~~CP~~~i~~~----------~----~~~~~---~~~~~-~--~~-~~~~C~~Cg~C~~~CP~~Ai 63 (81)
T PLN00071 7 IYDTCIGCTQCVRACPTDVLEMI----------P----WDGCK---AKQIA-S--AP-RTEDCVGCKRCESACPTDFL 63 (81)
T ss_pred cCCcCcChhHHHHHCCccceeee----------c----ccccc---ccccc-C--cC-CCCcCcChhhHHhhcCCccc
Confidence 45689999999999995431100 0 00000 00000 0 01 23579999999999999864
No 109
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=97.13 E-value=8.4e-05 Score=65.00 Aligned_cols=57 Identities=30% Similarity=0.495 Sum_probs=35.5
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
..+..+|+.||.|+.+||....... .+.... ... + .. ....|+.||.|+.+||.++-
T Consensus 34 ~~d~~~C~~C~~Cv~~CP~~ai~~~---------------~~~~~~--~~~---~--~i-~~~~C~~Cg~C~~vCP~~AI 90 (180)
T PRK12387 34 EYNPQQCIGCAACVNACPSNALTVE---------------TDLATG--ELA---W--EF-NLGRCIFCGRCEEVCPTAAI 90 (180)
T ss_pred EEChhhCcChhHHHHhcCccCeEee---------------ccccCC--ccc---c--ee-ccccCcCccchhhhcCcCce
Confidence 3467899999999999996432100 000000 000 0 11 34589999999999998753
No 110
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.13 E-value=0.00013 Score=71.87 Aligned_cols=55 Identities=24% Similarity=0.465 Sum_probs=33.7
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC-CC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK-GL 277 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~-gI 277 (302)
.+.++|+.||.|..+||.... .+..+..++.. . . .. ....|+.||.|+.+||. ++
T Consensus 339 ~~~~~C~~C~~C~~~Cp~~~~------------~ai~~~~~~~~-----~---~--~i-~~~~C~~Cg~C~~~CP~~~A 394 (420)
T PRK08318 339 IDQDKCIGCGRCYIACEDTSH------------QAIEWDEDGTR-----T---P--EV-IEEECVGCNLCAHVCPVEGC 394 (420)
T ss_pred ECHHHCCCCCcccccCCCcch------------hheeeccCCCc-----e---E--Ee-chhhCcccchHHhhCCCCCC
Confidence 456799999999999995310 01100001100 0 0 01 23479999999999999 65
No 111
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=97.12 E-value=9.7e-05 Score=69.00 Aligned_cols=57 Identities=26% Similarity=0.546 Sum_probs=36.3
Q ss_pred hhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 197 KKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 197 ~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
....+..+|+.||.|+.+||..... +.+..++.. . . .. ....|..||.|+.+||++
T Consensus 42 ~~~~~~~~C~~C~~C~~~Cp~~a~~-------------~~~~~~~~~-----~---~--~~-~~~~C~~Cg~C~~~CP~~ 97 (295)
T TIGR02494 42 ELLFKENRCLGCGKCVEVCPAGTAR-------------LSELADGRN-----R---I--II-RREKCTHCGKCTEACPSG 97 (295)
T ss_pred eEEEccccCCCCchhhhhCcccccc-------------cccccCCCc-----c---e--ee-chhhcCchhHhhccCcHh
Confidence 3456778999999999999964310 000011100 0 0 11 345899999999999976
Q ss_pred C
Q 045926 277 L 277 (302)
Q Consensus 277 I 277 (302)
+
T Consensus 98 A 98 (295)
T TIGR02494 98 A 98 (295)
T ss_pred H
Confidence 4
No 112
>PRK06991 ferredoxin; Provisional
Probab=97.06 E-value=0.00013 Score=67.82 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=33.4
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
..+.+.||.||.|+.+||+.... ..+.. +.. . ....|+.||.|+.+||++
T Consensus 81 ~id~~~CigCg~Cv~aCP~~AI~-----------------~~~~~------~~~----v-~~~~CigCg~Cv~vCP~~ 130 (270)
T PRK06991 81 VIDEQLCIGCTLCMQACPVDAIV-----------------GAPKQ------MHT----V-LADLCTGCDLCVPPCPVD 130 (270)
T ss_pred EEccccCCCCcHHHHhCCHhhee-----------------ccccc------cee----e-CHhhCCCchHHHhhCCcC
Confidence 34567999999999999954310 00000 000 1 234799999999999988
No 113
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=97.05 E-value=0.00015 Score=66.89 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=33.5
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
+.++|+.|+.|..+||+..... ..... ++ .. .. ....|+.||+|+++||+++
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~--------------~~~~~-~~----~~-----~i-~~~~C~~Cg~Cv~~CP~~A 250 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLR--------------MPLKK-GG----ST-----LV-LSGDCTLCGRCIDVCHEDV 250 (255)
T ss_pred ccccCeEcCCccCcCCCCceee--------------ccccC-CC----ce-----Ee-ccccccchhHHHHhCCccc
Confidence 3689999999999999643100 00000 00 00 01 2357999999999999986
No 114
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=97.05 E-value=0.0011 Score=65.07 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=46.6
Q ss_pred cceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCC-CccCccEEEE-CCE-----
Q 045926 56 KKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCRE-GICGSCAMNI-GGT----- 128 (302)
Q Consensus 56 ~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~-g~CG~C~V~V-nG~----- 128 (302)
...+++|+|.. .. ..++++.+ |.|||||+++.+.. ...+|+. |.||+|.|.| .|.
T Consensus 32 ~~~~~~i~~~~---~~--------~~~~~~~~-g~tLL~a~~~~gi~------i~~~C~g~G~CgtC~v~v~~G~~~~~~ 93 (409)
T PRK05464 32 PSGDVTIKING---DP--------EKTITVPA-GGKLLGALASNGIF------LSSACGGGGSCGQCRVKVKEGGGDILP 93 (409)
T ss_pred cCccEEEEEcC---CC--------cEEEEECC-CchHHHHHHHcCCC------cccCCCCccEeCCCEEEEecCCcCCCh
Confidence 34567777643 11 14566777 99999999998742 3456995 9999999997 452
Q ss_pred --------------EeccccccccC
Q 045926 129 --------------NTVACLKPIDG 139 (302)
Q Consensus 129 --------------~~laC~t~v~~ 139 (302)
.+|||.+.+..
T Consensus 94 ~e~~~l~~~e~~~g~rLaCq~~~~~ 118 (409)
T PRK05464 94 TELSHISKREAKEGWRLSCQVKVKQ 118 (409)
T ss_pred hhhhhcCHhhccCCcEEEeeCEECC
Confidence 25799987764
No 115
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.04 E-value=0.00012 Score=53.21 Aligned_cols=17 Identities=35% Similarity=0.858 Sum_probs=15.0
Q ss_pred cCcccCcccCCCCCccc
Q 045926 204 ECILCACCTTSCPSYWW 220 (302)
Q Consensus 204 ~CI~CG~C~~aCP~~~~ 220 (302)
.|+.||+|+.+||+...
T Consensus 1 ~C~~C~~C~~~CP~~AI 17 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAI 17 (67)
T ss_pred CCcchhHHHHhCcHhhc
Confidence 49999999999998764
No 116
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=97.02 E-value=0.00012 Score=58.59 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=33.5
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
.+..+|+.|+.|+.+||..... ...++. . .. ....|+.||.|+.+||.++
T Consensus 48 ~d~~~Ci~C~~C~~~CP~~ai~---------------~~~~~~----------~--~i-d~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09624 48 FNRDKCVRCYLCYIYCPEPAIY---------------LDEEGY----------P--VF-DYDYCKGCGICANECPTKA 97 (105)
T ss_pred EChhHCcChhhHHhhCCHhhEE---------------ecCCCc----------E--EE-CchhCCCcCchhhhcCcCc
Confidence 4567899999999999953210 000000 0 01 2347999999999999876
No 117
>PRK08764 ferredoxin; Provisional
Probab=96.97 E-value=0.00022 Score=59.61 Aligned_cols=48 Identities=21% Similarity=0.493 Sum_probs=32.6
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
.++||.||+|+.+||...+. .+.+. .. .. ....|+.||.|+.+||+++
T Consensus 84 ~~~Ci~C~~Cv~aCp~~ai~-----------------~~~~~------~~----~v-~~~~C~~Cg~Cv~~CP~~A 131 (135)
T PRK08764 84 EADCIGCTKCIQACPVDAIV-----------------GGAKH------MH----TV-IAPLCTGCELCVPACPVDC 131 (135)
T ss_pred cccCcCcchHHHhCChhhcC-----------------ccCCC------ce----ee-cCCcCcCccchhhhcCccc
Confidence 36899999999999953210 01100 00 01 2357999999999999986
No 118
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=96.96 E-value=0.00021 Score=66.49 Aligned_cols=55 Identities=16% Similarity=0.357 Sum_probs=34.8
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.+.++|+.|+.|..+||+.... .|. ..+.+. . . .. ....|+.||+|+++||+++-
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~-----~~~---------~~~~~~----~---~--~i-~~~~C~~Cg~Cv~~CP~~Ai 259 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVL-----RPP---------LKGKQS----P---S--QV-TSGDCITCGRCIDVCSEDVF 259 (271)
T ss_pred CCcccCcccCCcCCcCCCccee-----ccc---------ccCCCc----c---c--ee-CcccCcChhHHHhhcCccce
Confidence 4667899999999999964311 000 001000 0 0 01 23579999999999999763
No 119
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.92 E-value=0.00023 Score=56.98 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=34.4
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
...+.++|+.|+.|+.+||.... .+..++. . .. ....|..||.|+.+||.++
T Consensus 46 p~i~~~~Ci~C~~C~~~CP~~ai---------------~~~~~~~----------~--~i-d~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09623 46 PVVDESKCVKCYICWKFCPEPAI---------------YIKEDGY----------V--AI-DYDYCKGCGICANECPTKA 97 (105)
T ss_pred EEECcccCccccchhhhCCHhhe---------------EecCCCc----------E--Ee-CchhCcCcchhhhhcCcCc
Confidence 34567899999999999995221 0000110 0 01 2357999999999999876
No 120
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.90 E-value=0.00027 Score=36.94 Aligned_cols=15 Identities=33% Similarity=1.008 Sum_probs=13.8
Q ss_pred CcccccccccCCCCC
Q 045926 263 CRAIKNCTATCPKGL 277 (302)
Q Consensus 263 C~~Cg~C~~vCP~gI 277 (302)
|+.|+.|+++||+++
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 889999999999985
No 121
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.89 E-value=0.00031 Score=62.63 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=43.5
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccc------c---c
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAI------K---N 268 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~C------g---~ 268 (302)
...+.+.||.||.|+.+||...- ++ +. +....+.|++| | .
T Consensus 95 V~vd~d~CIGC~yCi~ACPyga~----~~-------------~~--------------~~~~~~KCt~C~~ri~~g~~Pa 143 (203)
T COG0437 95 VLVDKDLCIGCGYCIAACPYGAP----QF-------------NP--------------DKGVVDKCTFCVDRVAVGKLPA 143 (203)
T ss_pred EEecCCcccCchHHHhhCCCCCc----ee-------------Cc--------------ccCcccccCcchhhHhcCCCCc
Confidence 34567899999999999995431 11 11 01036789999 8 9
Q ss_pred ccccCCCCCCHHHHHHHHHH
Q 045926 269 CTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 269 C~~vCP~gI~~~~~I~~lR~ 288 (302)
|+++||+++-.-.-|.+++.
T Consensus 144 CV~~CP~~A~~fG~~~d~~~ 163 (203)
T COG0437 144 CVEACPTGALIFGDIDDPKS 163 (203)
T ss_pred ccccCCcccccccchhhcch
Confidence 99999999987666777665
No 122
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=96.89 E-value=0.00014 Score=62.82 Aligned_cols=52 Identities=21% Similarity=0.453 Sum_probs=34.9
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
...+.++|+.||+|+.+||..... .+.+. .. .. ....|+.||.|+.+||+++
T Consensus 108 ~~id~~~Ci~Cg~C~~aCp~~ai~-----------------~~~~~------~~----~i-~~~~C~~Cg~Cv~~CP~~A 159 (165)
T TIGR01944 108 ALIDEDNCIGCTKCIQACPVDAIV-----------------GAAKA------MH----TV-IADECTGCDLCVEPCPTDC 159 (165)
T ss_pred EEEECCcCCChhHHHHhCCccceE-----------------ecCCC------ce----Ee-ecccccChhHHHHhcCcCc
Confidence 455678999999999999953210 01000 00 01 2357999999999999986
No 123
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.85 E-value=0.00044 Score=50.74 Aligned_cols=52 Identities=23% Similarity=0.587 Sum_probs=33.8
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
+..+|+.||.|+.+||...+.. +... +++ .+ .. ....|+.||.|..+||+++
T Consensus 6 d~~~C~~c~~C~~~CP~~~~~~----~~~~---------~~~---------~~--~~-~~e~C~~C~~C~~~CP~~a 57 (68)
T COG1146 6 DYDKCIGCGICVEVCPAGVFDL----GEDE---------GGK---------PV--VA-RPEECIDCGLCELACPVGA 57 (68)
T ss_pred CchhcCCCChheeccChhhEEe----cccc---------Ccc---------ee--Ee-ccccCccchhhhhhCCcce
Confidence 4456999999999999754210 0000 010 01 11 4568999999999999984
No 124
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=96.81 E-value=0.00021 Score=53.53 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=34.1
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
..+...|+.|+.|+.+||..... +..++.. .. ....|+.|+.|+.+||.++
T Consensus 21 ~i~~~~C~~C~~C~~~Cp~~ai~---------------~~~~~~~------------~i-~~~~C~~C~~C~~~CP~~A 71 (78)
T TIGR02179 21 VVDKEKCIKCKNCWLYCPEGAIQ---------------EDEGGFV------------GI-DYDYCKGCGICANVCPVKA 71 (78)
T ss_pred EEcCCcCcChhHHHhhcCccceE---------------ecCCCcE------------Ee-cCccCcCccchhhhCCccc
Confidence 44567899999999999954311 0000000 01 2347999999999999976
No 125
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=96.78 E-value=0.00024 Score=56.36 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=34.2
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.....|+.|+.|+.+||....... .++.. . + .. ....|+.||.|..+||+++-
T Consensus 31 ~~~~~C~~C~~C~~~CP~~~i~~~---------------~~g~~-----~---~--~i-~~~~C~~Cg~C~~~CP~~Ai 83 (101)
T TIGR00402 31 LFSAVCTRCGECASACENNILQLG---------------QQGQP-----T---V--EF-DNAECDFCGKCAEACPTNAF 83 (101)
T ss_pred cCcCcCcChhHHHHHcCcccceec---------------cCCce-----e---e--Ee-cCccCcCccChhhHCCcccc
Confidence 345689999999999996432100 01100 0 0 01 23479999999999999874
No 126
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.75 E-value=0.00033 Score=40.23 Aligned_cols=20 Identities=35% Similarity=0.876 Sum_probs=17.2
Q ss_pred hccccccCcccCcccCCCCC
Q 045926 198 KLDGLYECILCACCTTSCPS 217 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~ 217 (302)
.+.|.++||.|+.|+.+||+
T Consensus 3 ~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACPV 22 (22)
T ss_pred eEEccccccCchhHHHhhCc
Confidence 35678899999999999984
No 127
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=96.74 E-value=0.00022 Score=67.70 Aligned_cols=53 Identities=21% Similarity=0.453 Sum_probs=34.4
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.+...|+.||.|+.+||.... .+..+ .+.. + .. ....|+.||.|+.+||+++-
T Consensus 166 ~d~~~C~~Cg~C~~~Cp~~a~------------~ai~~-~~~~----------~--~i-d~~~C~~Cg~Cv~~CP~~Al 218 (314)
T TIGR02912 166 YDADRCIGCGACVKVCKKKAV------------GALSF-ENYK----------V--VR-DHSKCIGCGECVLKCPTGAW 218 (314)
T ss_pred eeCccCCcchHHHHhcChhhc------------Cceec-cCCe----------E--Ee-CCCcCcCcchhhhhCCHhhc
Confidence 456789999999999995321 00000 1110 0 01 34589999999999998743
No 128
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0029 Score=60.93 Aligned_cols=95 Identities=20% Similarity=0.386 Sum_probs=64.4
Q ss_pred ceeEEEEEEecCCCCCCCCCceeEEEE-ecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEEC----C---
Q 045926 57 KVMKEFRIYRWNPDRPDSKPFLQSYHV-DLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIG----G--- 127 (302)
Q Consensus 57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v-~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~Vn----G--- 127 (302)
+.++.|.+++ +...+ ++.+ ..||||-|+. .+. -..+.+|-+|.||.|+|.|. |
T Consensus 6 ~~~irf~lN~------------~~~~l~~v~P-~~TlLd~LR~d~~l-----tGtKEGCAEGDCGACTVlVgrl~~g~~l 67 (493)
T COG4630 6 RNTIRFLLNG------------ETRVLSDVPP-TTTLLDYLRLDRRL-----TGTKEGCAEGDCGACTVLVGRLVDGGSL 67 (493)
T ss_pred cceeEEEecC------------ceEEeecCCc-chHHHHHHHHhccc-----ccccccccCCCcCceEEEEEeecCCCce
Confidence 3467777776 22333 3455 7999999984 221 24677899999999999883 3
Q ss_pred --EEeccccccccCCC-CCceEEccCCC-----chhhhhhhhccchhhhhc
Q 045926 128 --TNTVACLKPIDGDT-SKPTIITPLPH-----MFVIKDLVVDLTNFYQQY 170 (302)
Q Consensus 128 --~~~laC~t~v~~~~-~~~~~Iepl~~-----~~vikDLvvD~~~~~~~~ 170 (302)
+.+.||...+.... ++.+|||.|+. +|| +.-+||.+.--+.|
T Consensus 68 ~yeSVNACirfl~sL~G~hvvTvE~L~~~~g~LHpV-Qqamvd~hGSQCGf 117 (493)
T COG4630 68 RYESVNACIRFLGSLDGTHVVTVEHLRGQDGTLHPV-QQAMVDFHGSQCGF 117 (493)
T ss_pred eeeehhHHHHHHhhcCCceEEEehhhcCCCCCcCHH-HHHHHhccCCccCC
Confidence 25579999998754 46789999984 444 44456776654443
No 129
>PRK10194 ferredoxin-type protein; Provisional
Probab=96.69 E-value=0.00032 Score=60.29 Aligned_cols=18 Identities=28% Similarity=0.754 Sum_probs=15.4
Q ss_pred ccccCcccCcccCCCCCc
Q 045926 201 GLYECILCACCTTSCPSY 218 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~ 218 (302)
....|+.||.|+.+||..
T Consensus 32 ~~~~C~~Cg~C~~aCp~~ 49 (163)
T PRK10194 32 FLTHCTRCDACINACENN 49 (163)
T ss_pred HhhhCcChhHHHHHcChh
Confidence 356899999999999964
No 130
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=96.57 E-value=0.00056 Score=65.66 Aligned_cols=61 Identities=21% Similarity=0.423 Sum_probs=34.9
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
+.+...|+.||.|..+||.....-... . ...++.. +....... ..+.|+.||.|..+||..
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~~--~--------~~~~~~~------~~~~~~~~-d~~~C~~Cg~C~~vCP~~ 68 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDKK--A--------EIRDPND------LELYEKGA-APNVCEGCLTCSRICPVV 68 (341)
T ss_pred EECcccCcChHHHHHhCCHhhhecccC--c--------ccccccc------hhhhccCC-CcCcCcCcCchhhhCCCC
Confidence 455678999999999999643210000 0 0000000 00011111 457899999999999973
No 131
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=96.50 E-value=0.0011 Score=63.35 Aligned_cols=66 Identities=18% Similarity=0.414 Sum_probs=43.2
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccccc----------
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKN---------- 268 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~---------- 268 (302)
..+..+|+.|+.|+.+||.... ++..+.. .. .+..|.+|+.
T Consensus 139 ~id~dkCigCg~Cv~aCP~gai---------------~~~~~~~-------------~~-~~~KC~~C~~~~~~R~~~G~ 189 (328)
T PRK10882 139 HYDKDVCTGCRYCMVACPFNVP---------------KYDYNNP-------------FG-AIHKCELCNQKGVERLDKGG 189 (328)
T ss_pred cCCHHHcCcccHHHHhCCccce---------------ecccccc-------------cc-ceeecccccccchhhhhcCC
Confidence 3456788999999999984321 0000100 01 3568999999
Q ss_pred ---ccccCCCCCC----HHHHHHHHHHHHhhc
Q 045926 269 ---CTATCPKGLD----PADAIHKMKTKHMLS 293 (302)
Q Consensus 269 ---C~~vCP~gI~----~~~~I~~lR~~l~~~ 293 (302)
|+.+||+++- ..+++..+++.+...
T Consensus 190 ~PACv~aCP~gAi~fG~~~el~~~a~~ri~~~ 221 (328)
T PRK10882 190 LPGCVEVCPTGAVIFGTREELLAEAKRRLALK 221 (328)
T ss_pred CChhhhhccccceEeccHHHHHHHHHHHHHhc
Confidence 9999998775 566777777666553
No 132
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=96.47 E-value=0.00043 Score=64.09 Aligned_cols=49 Identities=18% Similarity=0.394 Sum_probs=33.4
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
+..+|+.||.|..+|+..... ++.++.. . . ..+.|..||.|..+||.++
T Consensus 67 ~~e~C~~CG~C~~vC~f~Ai~---------------~~~~~~~---------~---~-~~~lC~GCgaC~~~CP~~A 115 (284)
T COG1149 67 DPEKCIRCGKCAEVCRFGAIV---------------VLPGGKP---------V---L-NPDLCEGCGACSIVCPEPA 115 (284)
T ss_pred ChhhccccCcHHHhCCCCeEE---------------EcCCCce---------e---c-CcccccCcccceeeCCCcc
Confidence 456799999999999954310 0011100 0 1 3578999999999999884
No 133
>PRK09898 hypothetical protein; Provisional
Probab=96.42 E-value=0.0014 Score=58.50 Aligned_cols=49 Identities=29% Similarity=0.635 Sum_probs=34.3
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
..+...||.|+.|+.+||..... .+... . ....|+.||.|+++||+++-
T Consensus 150 ~vd~~~CigC~~C~~aCP~~ai~-----------------~~~~~-------------~-~~~kC~~Cg~Cv~~CP~~Ai 198 (208)
T PRK09898 150 TVDHKRCIGCSACTTACPWMMAT-----------------VNTES-------------K-KSSKCVLCGECANACPTGAL 198 (208)
T ss_pred EeccccCCCcCcccccCCCCCCE-----------------ecCCC-------------C-cCCcCcChHHHHHhCCcccE
Confidence 34567899999999999963210 11100 0 23589999999999999864
No 134
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=96.25 E-value=0.0026 Score=57.64 Aligned_cols=60 Identities=18% Similarity=0.423 Sum_probs=38.6
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc----------cc
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK----------NC 269 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg----------~C 269 (302)
.+..+|+.||.|..+||.... + .++. .. ....|++|+ +|
T Consensus 122 id~~~C~~C~~C~~aCP~~A~----~-------------~~~~-------------~~-~~~kC~~C~~~~~~~g~~P~C 170 (225)
T TIGR03149 122 VHKDLCVGCQYCIAACPYRVR----F-------------IHPV-------------TK-SADKCNFCRDTNLAEGKLPAC 170 (225)
T ss_pred echhhCCcchHHHHhCCCCCc----E-------------ecCC-------------CC-ccccCCCCCcchhhCCCCCcc
Confidence 455789999999999996431 0 0110 01 345899999 89
Q ss_pred cccCCCCCC----HHHHHHHHHHHH
Q 045926 270 TATCPKGLD----PADAIHKMKTKH 290 (302)
Q Consensus 270 ~~vCP~gI~----~~~~I~~lR~~l 290 (302)
+++||+++- ..+...++.+.+
T Consensus 171 v~~Cp~~Ai~f~~~~~~~~~~~~~~ 195 (225)
T TIGR03149 171 VESCPTKALTFGDLNDPNSEVSQKL 195 (225)
T ss_pred cccCccCCEEEecccccHHHHHHHH
Confidence 999998765 333344444444
No 135
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.014 Score=63.16 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=56.3
Q ss_pred EEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECC-----E----E
Q 045926 60 KEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGG-----T----N 129 (302)
Q Consensus 60 ~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG-----~----~ 129 (302)
+.|.|++ +.|+++.-++.+||+..||+ ++- -+...+|.+|-||+|+|.|-. + .
T Consensus 3 l~F~VNG------------~~~~~~~vdP~~TL~~fLR~k~~l-----tgtKlgC~EGGCGaCtv~ls~~dp~~~~~~~a 65 (1257)
T KOG0430|consen 3 LVFAING------------KRVEVELLPPDLTLNTFLREKLGL-----TGTKLGCGEGGCGACTVVLSKYDPELKVRHWA 65 (1257)
T ss_pred eEEEECC------------EEeeEecCCcchhHHHHHHHhcCC-----cceeeccCCCCccceEEEEeccCCCceeEEee
Confidence 4577777 44666665558999999996 221 135568999999999999876 2 4
Q ss_pred eccccccccCCCC-CceEEccCCC
Q 045926 130 TVACLKPIDGDTS-KPTIITPLPH 152 (302)
Q Consensus 130 ~laC~t~v~~~~~-~~~~Iepl~~ 152 (302)
+-||.|++-...+ ..+|+|.|.+
T Consensus 66 vNsCLt~l~s~~g~~VtT~EGlGn 89 (1257)
T KOG0430|consen 66 VNSCLTLLNSVHGLEVTTSEGLGN 89 (1257)
T ss_pred hhhhhhhcccccceEEEeeecccc
Confidence 4699999987544 5678999886
No 136
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=96.02 E-value=0.0037 Score=33.65 Aligned_cols=15 Identities=40% Similarity=1.154 Sum_probs=13.7
Q ss_pred ccCcccCcccCCCCC
Q 045926 203 YECILCACCTTSCPS 217 (302)
Q Consensus 203 ~~CI~CG~C~~aCP~ 217 (302)
+.||.|+.|+.+||+
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 579999999999995
No 137
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.99 E-value=0.0016 Score=38.34 Aligned_cols=18 Identities=28% Similarity=0.811 Sum_probs=15.8
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|+.+||.++
T Consensus 6 ~~~C~~Cg~C~~~Cp~~a 23 (24)
T PF12837_consen 6 PDKCIGCGDCVRVCPEGA 23 (24)
T ss_pred hhhCcChhHHHHhcchhc
Confidence 458999999999999875
No 138
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=95.97 E-value=0.002 Score=63.41 Aligned_cols=51 Identities=29% Similarity=0.617 Sum_probs=34.6
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
.+.+...|+.|+.|+.+||..... .+... . . . ....|..|+.|..+||.++
T Consensus 5 ~~id~~~Ci~C~~C~~~CP~~ai~-----------------~~~~~------~--~---i-~~~~C~~C~~C~~~CP~~A 55 (411)
T TIGR03224 5 HLIDPEICIRCNTCEETCPIDAIT-----------------HDDRN------Y--V---V-KADVCNGCMACVSPCPTGA 55 (411)
T ss_pred eeeCcccCcCccchhhhCCcccEe-----------------ccCCc------e--E---e-CcccCcCHHHHHhhcCccc
Confidence 345677899999999999964311 01100 0 0 1 2347999999999999875
No 139
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=95.94 E-value=0.0013 Score=54.83 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=34.2
Q ss_pred cccccCcccC-----cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926 200 DGLYECILCA-----CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP 274 (302)
Q Consensus 200 ~~~~~CI~CG-----~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP 274 (302)
.+..+|+.|| .|+.+||..... .+.... . .. .. ....|+.||.|+.+||
T Consensus 5 v~~~~C~gC~~~~~~~Cv~~CP~~ai~-----------------~~~~~~----~--~~--~i-d~~~C~~Cg~Cv~~CP 58 (132)
T TIGR02060 5 VYPTKCDGCKAGEKTACVYICPNDLMH-----------------LDTEIM----K--AY--NI-EPDMCWECYSCVKACP 58 (132)
T ss_pred EccccccCccCCchhcCHhhcCccceE-----------------ecCCCc----e--ee--ec-CchhCccHHHHHHhCC
Confidence 4567899999 999999964310 010000 0 00 01 2357999999999999
Q ss_pred CCCC
Q 045926 275 KGLD 278 (302)
Q Consensus 275 ~gI~ 278 (302)
.++-
T Consensus 59 ~~AI 62 (132)
T TIGR02060 59 QGAI 62 (132)
T ss_pred cCce
Confidence 8764
No 140
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.92 E-value=0.0013 Score=38.64 Aligned_cols=18 Identities=33% Similarity=0.776 Sum_probs=15.8
Q ss_pred cccccCcccCcccCCCCC
Q 045926 200 DGLYECILCACCTTSCPS 217 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~ 217 (302)
.+.++|+.||.|+.+||.
T Consensus 4 id~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 4 IDPDKCIGCGDCVRVCPE 21 (24)
T ss_pred EChhhCcChhHHHHhcch
Confidence 456789999999999996
No 141
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.89 E-value=0.011 Score=62.43 Aligned_cols=31 Identities=32% Similarity=0.740 Sum_probs=24.4
Q ss_pred CcccccCCCCCccCccEEEECCEEecccccc
Q 045926 106 SLSYRRSCREGICGSCAMNIGGTNTVACLKP 136 (302)
Q Consensus 106 tL~~~~~C~~g~CG~C~V~VnG~~~laC~t~ 136 (302)
+|.-+-.|..|+||+|.|.+.|...+.|..-
T Consensus 210 Sle~~M~CG~G~C~~C~v~~~~~~~~~C~dG 240 (752)
T PRK12778 210 SLNTIMVDGTGMCGACRVTVGGKTKFACVDG 240 (752)
T ss_pred eCcccccCcccccCcceeEeCCCeEEEECCC
Confidence 4555567999999999999988656888754
No 142
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.87 E-value=0.0028 Score=37.13 Aligned_cols=18 Identities=22% Similarity=0.595 Sum_probs=15.2
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|..+||.++
T Consensus 5 ~~~C~~Cg~C~~~CP~~a 22 (24)
T PF00037_consen 5 PDKCIGCGRCVEACPFDA 22 (24)
T ss_dssp TTTSSS-THHHHHSTTSS
T ss_pred hHHCCCcchhhhhccccc
Confidence 458999999999999986
No 143
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=95.86 E-value=0.0022 Score=58.44 Aligned_cols=50 Identities=22% Similarity=0.529 Sum_probs=34.0
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
.+..+|+.|+.|..+||..... ..++. . .. ....|..||.|..+||.+.-
T Consensus 145 id~~~C~~C~~C~~~CP~~ai~----------------~~~~~-------~-----~i-~~~~C~~Cg~C~~~CP~~AI 194 (234)
T TIGR02700 145 IDRKRCKGCGICVDACPRSAID----------------MVDGK-------A-----FI-RLLKCVGCGKCKEACPYNAI 194 (234)
T ss_pred EChhHCcCcchHHHhCCcccEE----------------ecCCc-------e-----EE-chhhCCccchHHhhCCCCce
Confidence 4557899999999999964310 00110 0 11 33579999999999998764
No 144
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.76 E-value=0.0049 Score=33.18 Aligned_cols=16 Identities=31% Similarity=0.827 Sum_probs=13.7
Q ss_pred ccCcccccccccCCCC
Q 045926 261 YRCRAIKNCTATCPKG 276 (302)
Q Consensus 261 ~~C~~Cg~C~~vCP~g 276 (302)
..|+.|+.|+.+||.+
T Consensus 2 ~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCCTTSSSSTTTSTT-
T ss_pred CcCCCCchHHhhccCC
Confidence 3799999999999974
No 145
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=95.70 E-value=0.0028 Score=49.13 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=33.9
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
..+..+||.|+.|.--||...... ..++.. . .. .-..|-.||-|+.+||+.
T Consensus 31 v~d~~kCi~C~~C~~yCPe~~i~~---------------~~~~~~--------~---~i-dYdyCKGCGICa~vCP~k 81 (91)
T COG1144 31 VVDEDKCINCKLCWLYCPEPAILE---------------EEGGYK--------V---RI-DYDYCKGCGICANVCPVK 81 (91)
T ss_pred EEcccccccCceeEEECCchheee---------------ccCCcc--------c---ee-EcccccCceechhhCChh
Confidence 456789999999999999643210 001100 0 01 235899999999999983
No 146
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=95.69 E-value=0.0018 Score=58.21 Aligned_cols=57 Identities=28% Similarity=0.622 Sum_probs=33.3
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc--cccccCCCCCC
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK--NCTATCPKGLD 278 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg--~C~~vCP~gI~ 278 (302)
+.+|+.||.|+.+||+....... + .+..... ... +. . ....|.+|+ .|+.+||+++-
T Consensus 52 ~~~Ci~Cg~Cv~aCP~~ai~~~~------------~-~~~~~~g-~p~---~~--~-~~~~C~~C~d~~Cv~~CP~~Ai 110 (213)
T TIGR00397 52 LAACVRCGLCVEACPYDILSLAS------------W-SDPAPLG-TPF---FT--P-REVPCRMCKDIPCARACPTGAL 110 (213)
T ss_pred cccccchhHHHHhCCcccccccc------------c-ccccccC-Ccc---cc--c-cCCcCCCCCCchHHhHcCHhhh
Confidence 47899999999999975421100 0 0000000 000 10 1 224699999 69999999873
No 147
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=95.62 E-value=0.0031 Score=62.54 Aligned_cols=40 Identities=30% Similarity=0.615 Sum_probs=29.6
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK 275 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~ 275 (302)
...|+.|+.|+.+||.... ..++ ....|+.||.|.++||.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~-----------------~~~~-----------------~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGID-----------------IRDG-----------------LQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCCChhhhHHhCCCCCE-----------------eCCC-----------------CchhChhhhHHHHhCCC
Confidence 4689999999999995310 0010 12469999999999996
No 148
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=95.56 E-value=0.0032 Score=59.06 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=35.2
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
-.-.+|+.||.|+..||+.... .+ +. . .. +...|..|++|.++||.|+-
T Consensus 190 v~e~kc~~c~~cv~~cp~~Ai~------------~~----~~-----------~--~I-~~~~ci~c~~c~~ac~~gav 238 (354)
T COG2768 190 VVEEKCYDCGLCVKICPVGAIT------------LT----KV-----------V--KI-DYEKCIGCGQCMEACPYGAV 238 (354)
T ss_pred eeeecccccchhhhhCCCccee------------cc----cc-----------e--ee-chhhccchhhhhhhccCccc
Confidence 3456899999999999986521 00 00 0 11 45589999999999999873
No 149
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=95.53 E-value=0.0032 Score=59.70 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=32.9
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccc---------ccc
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAI---------KNC 269 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~C---------g~C 269 (302)
..+..+|+.|+.|+.+||..... .+.. .. ....|++| ..|
T Consensus 158 ~ID~ekCiGCg~Cv~ACPygAi~-----------------~n~~-------------~~-~~eKC~~C~~Rie~G~~PaC 206 (321)
T TIGR03478 158 LVDQERCKGYRYCVEACPYKKVY-----------------FNPQ-------------SQ-KSEKCIGCYPRIEKGIAPAC 206 (321)
T ss_pred EECHHHCcchHHHHHhCCCCCcE-----------------ecCC-------------CC-chhhCCCchhhhccCCCCHH
Confidence 34566788888888888853210 0000 01 34589999 899
Q ss_pred cccCCCCCC
Q 045926 270 TATCPKGLD 278 (302)
Q Consensus 270 ~~vCP~gI~ 278 (302)
+.+||.++-
T Consensus 207 v~aCP~~A~ 215 (321)
T TIGR03478 207 VKQCPGRIR 215 (321)
T ss_pred HhhcCcccE
Confidence 999998875
No 150
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=95.51 E-value=0.01 Score=55.73 Aligned_cols=67 Identities=19% Similarity=0.377 Sum_probs=36.3
Q ss_pred ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCc-ccccccccCCCCCC
Q 045926 203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCR-AIKNCTATCPKGLD 278 (302)
Q Consensus 203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~-~Cg~C~~vCP~gI~ 278 (302)
..|..|+.|..+||+.....+..+.+..=+ .|..+... .....+ +.. ....|+ .|+.|..+||.+..
T Consensus 159 ~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~-sy~ti~~~-~~~~~~-~~~------~~~~~~~gCd~Cq~vCP~n~~ 226 (282)
T TIGR00276 159 EYCGRCTKCIDACPTQALVEPEFVDAPRCI-SYLTIEKD-AALPKE-FAS------NCGGRSYGCDICQEVCPWNKK 226 (282)
T ss_pred CCCccHHHHHHhcCcccccCCCccCHHHHH-HHhcccCC-CcCCHH-HHH------HhcCcccCCCCccccCCCCCC
Confidence 579999999999998764322223332111 11111111 100011 110 233565 69999999998864
No 151
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=95.49 E-value=0.0024 Score=63.17 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=18.0
Q ss_pred EEEEecCCCCCCCCCceeEEEEecC
Q 045926 62 FRIYRWNPDRPDSKPFLQSYHVDLS 86 (302)
Q Consensus 62 ~~I~r~~p~~~~~~~~~~~y~v~~~ 86 (302)
.+||- ||+-|.-..||+.++++.+
T Consensus 86 ~~iF~-np~~p~~~dyyep~ty~y~ 109 (492)
T TIGR01660 86 ANIFA-NPDLPSIDDYYEPFDFDYQ 109 (492)
T ss_pred hHhhc-CCCCCCcccccCCcccchh
Confidence 46664 8888888888888888763
No 152
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=95.37 E-value=0.0063 Score=62.68 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=32.8
Q ss_pred ccccccCcccCcccC--CCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 199 LDGLYECILCACCTT--SCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~--aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
..+..+|+.||.|.. +||.... .+++ . .. .. .|+.||.|+.+||.+
T Consensus 546 ~id~~~C~~C~~C~~~~~CP~~~~------------------~~~~-------~-----~i-~~-~C~~Cg~C~~~CP~~ 593 (595)
T TIGR03336 546 KVDQDKCIGCKKCIKELGCPAIEP------------------EDKE-------A-----VI-DP-LCTGCGVCAQICPFD 593 (595)
T ss_pred EEcCCcCCCccccccccCCCCccc------------------cCCc-------c-----ee-CC-CCcCHHHHHhhCccc
Confidence 445679999999999 9995320 0110 0 11 22 699999999999987
Q ss_pred C
Q 045926 277 L 277 (302)
Q Consensus 277 I 277 (302)
+
T Consensus 594 A 594 (595)
T TIGR03336 594 A 594 (595)
T ss_pred c
Confidence 5
No 153
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=95.34 E-value=0.0058 Score=59.58 Aligned_cols=47 Identities=26% Similarity=0.497 Sum_probs=32.4
Q ss_pred ccccccCcccCccc--CCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 199 LDGLYECILCACCT--TSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 199 ~~~~~~CI~CG~C~--~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
..+..+|+.|+.|. .+||+.... .+. .+ ....|..||.|+.+||.+
T Consensus 298 ~id~dkCi~Cg~C~~~~aCPt~AI~-----------------~~~----------~I-----d~~~Ci~CGaCV~aCP~~ 345 (391)
T TIGR03287 298 KYNPERCENCDPCLVEEACPVPAIK-----------------KDG----------TL-----NTEDCFGCGYCAEICPGG 345 (391)
T ss_pred EEchhhCcCCCCCcCCcCCCHhhEe-----------------ccc----------ee-----ChHhCcChHHHHhhCCcc
Confidence 45667899999995 899953210 000 01 234799999999999975
Q ss_pred C
Q 045926 277 L 277 (302)
Q Consensus 277 I 277 (302)
+
T Consensus 346 A 346 (391)
T TIGR03287 346 A 346 (391)
T ss_pred c
Confidence 4
No 154
>PRK10194 ferredoxin-type protein; Provisional
Probab=95.31 E-value=0.0035 Score=53.86 Aligned_cols=19 Identities=32% Similarity=0.868 Sum_probs=16.0
Q ss_pred ccccCcccCcccCCCCCcc
Q 045926 201 GLYECILCACCTTSCPSYW 219 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~ 219 (302)
+...|+.|+.|+.+||+..
T Consensus 64 ~~~~C~~C~~C~~~CP~~a 82 (163)
T PRK10194 64 KNNECSFCYACAQACPESL 82 (163)
T ss_pred cCCCCCCchhhHhhCcchh
Confidence 3467999999999999854
No 155
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.26 E-value=0.016 Score=63.31 Aligned_cols=31 Identities=35% Similarity=0.717 Sum_probs=25.5
Q ss_pred CcccccCCCCCccCccEEEECCEEecccccc
Q 045926 106 SLSYRRSCREGICGSCAMNIGGTNTVACLKP 136 (302)
Q Consensus 106 tL~~~~~C~~g~CG~C~V~VnG~~~laC~t~ 136 (302)
+|.-+..|..|+||.|.|.+.|...++|..-
T Consensus 210 Sle~~M~cG~G~Cg~C~v~~~~~~~~~C~DG 240 (1006)
T PRK12775 210 SLNAIMVDGTGMCGSCRVTVGGEVKFACVDG 240 (1006)
T ss_pred CChhheeCccceeCCCEeeeCCceEEEeCCC
Confidence 4555567999999999999999778899754
No 156
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=95.24 E-value=0.00075 Score=62.32 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=15.0
Q ss_pred ccCcccccccccCCCC
Q 045926 261 YRCRAIKNCTATCPKG 276 (302)
Q Consensus 261 ~~C~~Cg~C~~vCP~g 276 (302)
..|+.||.|+.+||.+
T Consensus 184 d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 184 DACTGCGKCEKACVLE 199 (254)
T ss_pred HHCcCcChhhHhcCCC
Confidence 5799999999999997
No 157
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=95.22 E-value=0.009 Score=56.07 Aligned_cols=63 Identities=24% Similarity=0.455 Sum_probs=38.7
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc---------cc
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK---------NC 269 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg---------~C 269 (302)
..+.++|+.|+.|+.+||..... .+.. .. ....|..|. +|
T Consensus 120 ~id~dkCigC~~Cv~aCP~~a~~-----------------~~~~-------------~~-~~~KC~~C~dr~~~G~~PaC 168 (283)
T TIGR01582 120 DFDHSKCIGCGYCIVGCPFNIPR-----------------YDKV-------------DN-RPYKCTLCIDRVSVGQEPAC 168 (283)
T ss_pred EEeHHHCCcchHHHhhCCCCCcE-----------------EcCC-------------CC-ChhhhcccccccccCCCChH
Confidence 34567788888888888853210 0000 00 245788885 89
Q ss_pred cccCCCCCC----HHHHHHHHHHHHhh
Q 045926 270 TATCPKGLD----PADAIHKMKTKHML 292 (302)
Q Consensus 270 ~~vCP~gI~----~~~~I~~lR~~l~~ 292 (302)
+.+||+++- ..+++...++.+.+
T Consensus 169 v~aCP~gAi~fg~~~~~~~~a~~r~~~ 195 (283)
T TIGR01582 169 VKTCPTNAISFGFKEDMKERAEKRVAD 195 (283)
T ss_pred hCcccHhhEEECCHHHHHHHHHHHHHh
Confidence 999999876 34555555544443
No 158
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=95.13 E-value=0.0045 Score=56.12 Aligned_cols=52 Identities=23% Similarity=0.387 Sum_probs=34.4
Q ss_pred cccccCcccCc--ccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 200 DGLYECILCAC--CTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 200 ~~~~~CI~CG~--C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
+....|++|+. |+.+||+.....+. .++. + .. ....|+.||.|..+||.++
T Consensus 89 ~~~~~C~~C~~~~Cv~~CP~gAi~~~~--------------~~g~----------v--~i-d~~~C~~C~~C~~aCP~~A 141 (225)
T TIGR03149 89 FFRKSCQHCDNAPCVAVCPTGASFKDE--------------ETGI----------V--DV-HKDLCVGCQYCIAACPYRV 141 (225)
T ss_pred ECchhccCCcCcChHhhCCCCcEEEeC--------------CCCe----------E--Ee-chhhCCcchHHHHhCCCCC
Confidence 34568999996 99999975421000 0010 0 01 2347999999999999998
Q ss_pred C
Q 045926 278 D 278 (302)
Q Consensus 278 ~ 278 (302)
.
T Consensus 142 ~ 142 (225)
T TIGR03149 142 R 142 (225)
T ss_pred c
Confidence 4
No 159
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=95.11 E-value=0.0029 Score=59.94 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=36.5
Q ss_pred hhccccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926 197 KKLDGLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP 274 (302)
Q Consensus 197 ~~~~~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP 274 (302)
..++....|++|+ .|+.+||+...... ..++. + .. ....|+.|+.|+.+||
T Consensus 123 ~~~y~p~~C~hC~nP~Cv~aCPtgAI~k~--------------eedGi----------V--~I-D~ekCiGCg~Cv~ACP 175 (321)
T TIGR03478 123 YYFYLPRICNHCTNPACLAACPTGAIYKR--------------EEDGI----------V--LV-DQERCKGYRYCVEACP 175 (321)
T ss_pred eEEEecccCCCCCCccchhhCCcCcEEEe--------------cCCCe----------E--EE-CHHHCcchHHHHHhCC
Confidence 3446678999999 99999997542100 00110 0 01 2347999999999999
Q ss_pred CCCC
Q 045926 275 KGLD 278 (302)
Q Consensus 275 ~gI~ 278 (302)
.++.
T Consensus 176 ygAi 179 (321)
T TIGR03478 176 YKKV 179 (321)
T ss_pred CCCc
Confidence 9874
No 160
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=95.10 E-value=0.0099 Score=51.94 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=35.3
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
+.+-+.||.|-.|..+||+-.. +.+-+. .. .+ ....|+.|+.|+..||++..
T Consensus 111 ~i~e~~ciGCtkCiqaCpvdAi-----------vg~~~~-----------mh-tv-----~~dlCTGC~lCva~CPtdci 162 (198)
T COG2878 111 LIDEANCIGCTKCIQACPVDAI-----------VGATKA-----------MH-TV-----IADLCTGCDLCVAPCPTDCI 162 (198)
T ss_pred EecchhccccHHHHHhCChhhh-----------hccchh-----------HH-HH-----HHHHhcCCCcccCCCCCCce
Confidence 4456789999999999997542 111111 01 11 12369999999999999875
No 161
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.09 E-value=0.0041 Score=36.44 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=15.2
Q ss_pred cccccCcccCcccCCCCCc
Q 045926 200 DGLYECILCACCTTSCPSY 218 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~ 218 (302)
.+.+.|+.||.|+.+||..
T Consensus 3 id~~~C~~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 3 IDPDKCIGCGRCVEACPFD 21 (24)
T ss_dssp EETTTSSS-THHHHHSTTS
T ss_pred EchHHCCCcchhhhhcccc
Confidence 3567899999999999964
No 162
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=95.08 E-value=0.006 Score=56.00 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=34.4
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc---------cc
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK---------NC 269 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg---------~C 269 (302)
..+...|+.|+.|+.+||..... .++. .. ....|++|+ .|
T Consensus 126 ~id~~~CigC~~Cv~aCP~~Ai~-----------------~~~~-------------~~-~~~KC~~C~~r~~~G~~PaC 174 (244)
T PRK14993 126 VVDNKRCVGCAYCVQACPYDARF-----------------INHE-------------TQ-TADKCTFCVHRLEAGLLPAC 174 (244)
T ss_pred EEcHHHCCCHHHHHHhcCCCCCE-----------------EeCC-------------CC-CcccCcCCcchhhCCCCccc
Confidence 34567899999999999964310 0110 01 346899998 89
Q ss_pred cccCCCCCC
Q 045926 270 TATCPKGLD 278 (302)
Q Consensus 270 ~~vCP~gI~ 278 (302)
+.+||+++-
T Consensus 175 v~~CP~~Al 183 (244)
T PRK14993 175 VESCVGGAR 183 (244)
T ss_pred chhcccCCE
Confidence 999998875
No 163
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.07 E-value=0.0085 Score=59.77 Aligned_cols=46 Identities=28% Similarity=0.656 Sum_probs=33.4
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
+...|++||.|.. ||..... .+ +. .. ....|..||.|+.+||.|+-
T Consensus 559 de~~C~gC~~C~~-Cpf~ais-----------------~~-ka------------~v-~~~~C~gCG~C~~aCp~gai 604 (622)
T COG1148 559 DEDKCTGCGICAE-CPFGAIS-----------------VD-KA------------EV-NPLRCKGCGICSAACPSGAI 604 (622)
T ss_pred chhhhcCCcceee-CCCCcee-----------------cc-cc------------cc-ChhhhCcccchhhhCCcccc
Confidence 4568999999999 9965421 01 00 11 34589999999999999885
No 164
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=95.00 E-value=0.0031 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=15.9
Q ss_pred hhccccccCcccCcccCCCCCcc
Q 045926 197 KKLDGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 197 ~~~~~~~~CI~CG~C~~aCP~~~ 219 (302)
....+..+||.||.|..+||...
T Consensus 34 ~V~id~~~CigC~~C~~aCP~~a 56 (98)
T PF13247_consen 34 IVVIDEDKCIGCGYCVEACPYGA 56 (98)
T ss_dssp -EEE-TTTCCTHHHHHHH-TTS-
T ss_pred eEEechhhccCchhhhhhhccCc
Confidence 34556789999999999999643
No 165
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.92 E-value=0.058 Score=58.85 Aligned_cols=77 Identities=14% Similarity=0.004 Sum_probs=53.0
Q ss_pred eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCccc---cc-C--CCCCccCccEEEECCE---
Q 045926 58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSY---RR-S--CREGICGSCAMNIGGT--- 128 (302)
Q Consensus 58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~---~~-~--C~~g~CG~C~V~VnG~--- 128 (302)
+.|+|.++. -.++..+ |.||.-||...+.. .-.-+| ++ + |..|.|-.|.|.|||.
T Consensus 11 ~~~~~~~dg--------------~~~~~~~-g~t~a~al~a~g~~-~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~ 74 (985)
T TIGR01372 11 RPLRFTFDG--------------KSYSGFA-GDTLASALLANGVH-LVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQR 74 (985)
T ss_pred CeEEEEECC--------------EEeecCC-CCHHHHHHHhCCCe-eecccCCCCCCCcccccCccCCCeEEEECCCcCC
Confidence 457776666 3455667 99999999987733 112233 11 1 8878899999999973
Q ss_pred --EeccccccccCCCCCceEEccCCCch
Q 045926 129 --NTVACLKPIDGDTSKPTIITPLPHMF 154 (302)
Q Consensus 129 --~~laC~t~v~~~~~~~~~Iepl~~~~ 154 (302)
+++||.|++.+ .++|+....+|
T Consensus 75 ~~~~~ac~~~~~~----gm~~~~~~~~~ 98 (985)
T TIGR01372 75 EPNTRATTQELYD----GLVATSQNRWP 98 (985)
T ss_pred CCCccceeEEccc----CCEEecccCCC
Confidence 46899999987 45666555443
No 166
>PRK13795 hypothetical protein; Provisional
Probab=94.92 E-value=0.004 Score=64.65 Aligned_cols=53 Identities=23% Similarity=0.484 Sum_probs=34.2
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
+.....|+.||.|+.+||...... .+... .+ .. ....|+.||.|+.+||.+.-
T Consensus 577 v~~~~~C~~Cg~C~~~CP~~ai~~----------------~~~~~--------~~--~i-d~~~C~~Cg~C~~aCP~~a~ 629 (636)
T PRK13795 577 LRRAAECVGCGVCVGACPTGAIRI----------------EEGKR--------KI--SV-DEEKCIHCGKCTEVCPVVKY 629 (636)
T ss_pred EEccccCCCHhHHHHhCCcccEEe----------------ecCCc--------eE--Ee-chhhcCChhHHHhhcCCCee
Confidence 345679999999999999643100 00000 00 01 23479999999999998653
No 167
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=94.87 E-value=0.0094 Score=50.97 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=32.3
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc---------ccc
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK---------NCT 270 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg---------~C~ 270 (302)
.+...|+.||.|+.+||..... .+.. .. ....|+.|+ +|+
T Consensus 92 i~~~~C~~C~~C~~aCP~~ai~-----------------~~~~-------------~~-~~~kC~~C~~r~~~g~~p~Cv 140 (161)
T TIGR02951 92 VDQDKCIGCRYCVWACPYGAPQ-----------------YDPQ-------------QG-VMGKCDGCYDRVEKGLRPACV 140 (161)
T ss_pred ECHHhCCCchHHHhhCCCCCcE-----------------EcCC-------------CC-ccccCCCCHHHHHCCCCCcch
Confidence 4456788888888888853210 0000 01 345899998 999
Q ss_pred ccCCCCCCH
Q 045926 271 ATCPKGLDP 279 (302)
Q Consensus 271 ~vCP~gI~~ 279 (302)
.+||+++-.
T Consensus 141 ~~Cp~~Ai~ 149 (161)
T TIGR02951 141 DACPMRALD 149 (161)
T ss_pred hhccccceE
Confidence 999998753
No 168
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=94.83 E-value=0.0077 Score=57.66 Aligned_cols=51 Identities=18% Similarity=0.459 Sum_probs=34.1
Q ss_pred ccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 201 GLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 201 ~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
....|++|+ .|+.+||+....... ..+ .+ .. ....|+.|+.|+.+||.++.
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~gAi~k~~--------------~~g-------~V-----~i-d~dkCigCg~Cv~aCP~gai 160 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPVSALTKDP--------------KTG-------IV-----HY-DKDVCTGCRYCMVACPFNVP 160 (328)
T ss_pred ccccCCCcCchhhHhhCCCCCEEecc--------------cCC-------cc-----cC-CHHHcCcccHHHHhCCccce
Confidence 446899998 999999975421100 000 00 01 23579999999999999885
No 169
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=94.82 E-value=0.0028 Score=55.34 Aligned_cols=63 Identities=19% Similarity=0.356 Sum_probs=35.7
Q ss_pred cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc------cccccC
Q 045926 200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK------NCTATC 273 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg------~C~~vC 273 (302)
.+..+|+.||.|+.+||..... +.+...+ ...+... ....... ....|..|+ .|+.+|
T Consensus 84 i~~~~C~~C~~C~~~CP~~ai~---~~~~~~~------~~~~~~~------~~~~~~~-~~~kC~~C~~~~~~paCv~~C 147 (181)
T PRK10330 84 VMQERCIGCKTCVVACPYGAME---VVVRPVI------RNSGAGL------NVRAEKA-EANKCDLCNHREDGPACMAAC 147 (181)
T ss_pred eChhhCCCcchhhhhCCccCeE---eeccccc------ccccccc------ccccCCc-eeeeCcCCCCCCCCccchhhC
Confidence 4567899999999999965421 0000000 0000000 0000011 245899999 999999
Q ss_pred CCCCC
Q 045926 274 PKGLD 278 (302)
Q Consensus 274 P~gI~ 278 (302)
|+++-
T Consensus 148 P~~Al 152 (181)
T PRK10330 148 PTHAL 152 (181)
T ss_pred chhhE
Confidence 99986
No 170
>PRK13984 putative oxidoreductase; Provisional
Probab=94.79 E-value=0.0067 Score=62.32 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=34.8
Q ss_pred ccccccCcccCcccCCCCCcccCC-CCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNP-EEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~-~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
+.+..+||.||.|+.+||...... +.+-.+ + ..+... ... .. ....|..|+.|..+||.+.
T Consensus 41 ~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~--------~-~~g~~~---~~~-----~i-~~~~c~~c~~c~~~Cp~~A 102 (604)
T PRK13984 41 INDWEKCIGCGTCSKICPTDAITMVEVPDLP--------Q-EYGKKP---QRP-----VI-DYGRCSFCALCVDICTTGS 102 (604)
T ss_pred ccChhhCcCccchhhhCCccceEeecccccc--------c-cccccc---ccc-----cc-CcccCcCcchHHhhCCcCc
Confidence 346789999999999999543110 000000 0 000000 000 11 2357999999999999864
No 171
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.76 E-value=0.006 Score=31.83 Aligned_cols=14 Identities=36% Similarity=1.094 Sum_probs=12.6
Q ss_pred CcccCcccCCCCCc
Q 045926 205 CILCACCTTSCPSY 218 (302)
Q Consensus 205 CI~CG~C~~aCP~~ 218 (302)
|+.|+.|+.+||+.
T Consensus 1 C~~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 1 CTGCGACVEVCPTG 14 (15)
T ss_pred CCCchHHHHHhcCC
Confidence 89999999999963
No 172
>PRK07118 ferredoxin; Validated
Probab=94.73 E-value=0.0066 Score=56.88 Aligned_cols=47 Identities=21% Similarity=0.520 Sum_probs=32.5
Q ss_pred ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
+.||.||.|+.+||+.... +.++.. .. ....|+.||.|+.+||.++-
T Consensus 139 ~~CigCg~C~~aCp~~AI~----------------~~~g~~------------~i-d~~~C~~Cg~Cv~aCP~~ai 185 (280)
T PRK07118 139 YGCLGLGSCVAACPFDAIH----------------IENGLP------------VV-DEDKCTGCGACVKACPRNVI 185 (280)
T ss_pred CCCcChhHHHHhCCccCeE----------------ccCCeE------------EE-ChhhCcChhHHHHhcCccce
Confidence 4799999999999964321 011110 01 23589999999999998764
No 173
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.64 E-value=0.0038 Score=64.87 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=18.4
Q ss_pred hccccccCcccCcccCCCCCcc
Q 045926 198 KLDGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~ 219 (302)
.+.+.++||.|+.|..+|+...
T Consensus 5 i~~d~~~C~gC~~C~~aC~~~~ 26 (654)
T PRK12769 5 IMANSQQCLGCHACEIACVMAH 26 (654)
T ss_pred EEEChHhCcChhHHHHHhhhhh
Confidence 4457889999999999999743
No 174
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=94.61 E-value=0.006 Score=54.88 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=15.7
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|..+||++-
T Consensus 174 ~~~C~gCG~C~~~CP~~~ 191 (213)
T TIGR00397 174 SAKCTGCGTCEKHCVLSE 191 (213)
T ss_pred cccCCCcchhhHhCCCCC
Confidence 358999999999999874
No 175
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.58 E-value=0.019 Score=62.37 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=35.6
Q ss_pred cccccCccc----CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926 200 DGLYECILC----ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK 275 (302)
Q Consensus 200 ~~~~~CI~C----G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~ 275 (302)
.+..+|+.| |.|+.+||...... +... ...... + .+. ....|+.||+|..+||.
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A~~~---------i~~~--g~~~~~----~---~~~----~~~~C~~CG~C~~~CP~ 940 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRANVS---------IAVP--GFQNRF----Q---IVH----LDAMCNECGNCAQFCPW 940 (1019)
T ss_pred ccccccCCcccccchhhhhCCcccccc---------cccC--CcccCC----c---eEE----cCccCccccchhhhCCC
Confidence 356799999 99999999754110 0000 000000 0 010 13589999999999999
Q ss_pred CCCH
Q 045926 276 GLDP 279 (302)
Q Consensus 276 gI~~ 279 (302)
+..|
T Consensus 941 ~~~p 944 (1019)
T PRK09853 941 NGKP 944 (1019)
T ss_pred CCCc
Confidence 8764
No 176
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=94.51 E-value=0.0065 Score=56.14 Aligned_cols=18 Identities=39% Similarity=0.914 Sum_probs=15.4
Q ss_pred cccCcccCcccCCCCCcc
Q 045926 202 LYECILCACCTTSCPSYW 219 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~ 219 (302)
...|+.||.|+.+||...
T Consensus 58 ~~~Ci~Cg~Cv~aCP~~a 75 (254)
T PRK09476 58 LSACIRCGLCVQACPYDT 75 (254)
T ss_pred hhhCcCchHHHHhCCccc
Confidence 378999999999999643
No 177
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=94.49 E-value=0.011 Score=58.67 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.5
Q ss_pred ccccCcccc---------cccccCCCCCC
Q 045926 259 KLYRCRAIK---------NCTATCPKGLD 278 (302)
Q Consensus 259 ~~~~C~~Cg---------~C~~vCP~gI~ 278 (302)
....|.+|. .|+++||.++.
T Consensus 239 ~~~KCd~C~~Rie~G~pPaCVeaCP~~Ar 267 (492)
T TIGR01660 239 KSEKCIFCYPRIEAGQPTVCSETCVGRIR 267 (492)
T ss_pred ccccCCCChhHHhCCCCCcchhhcChhhh
Confidence 356899995 79999999984
No 178
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=94.45 E-value=0.061 Score=50.47 Aligned_cols=65 Identities=23% Similarity=0.450 Sum_probs=47.1
Q ss_pred cceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CC-CCccCccEEEEC--C----
Q 045926 56 KKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CR-EGICGSCAMNIG--G---- 127 (302)
Q Consensus 56 ~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~-~g~CG~C~V~Vn--G---- 127 (302)
+...+||+|+. ||+ ....++. |.+||.+|...|+ |-.| |. .|.||-|-|+|- |
T Consensus 33 ~~gd~ti~IN~-d~e----------~~~t~~a-G~kLL~~L~~~gi-------fi~SaCGGggsC~QCkv~v~~ggge~L 93 (410)
T COG2871 33 KVGDITIKING-DPE----------KTKTVPA-GGKLLGALASSGI-------FISSACGGGGSCGQCKVRVKKGGGEIL 93 (410)
T ss_pred ecCceEEEeCC-Chh----------hceecCC-chhHHHHHHhCCc-------ccccCCCCCccccccEEEEecCCCccC
Confidence 34568999998 443 3355556 9999999998774 3333 75 589999999883 2
Q ss_pred --------------EEeccccccccC
Q 045926 128 --------------TNTVACLKPIDG 139 (302)
Q Consensus 128 --------------~~~laC~t~v~~ 139 (302)
--+|||++.|..
T Consensus 94 pTe~sh~skrea~eG~RLsCQ~~Vk~ 119 (410)
T COG2871 94 PTELSHISKREAKEGWRLSCQVNVKH 119 (410)
T ss_pred cchhhhhhhhhhhccceEEEEecccc
Confidence 135899999974
No 179
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=94.39 E-value=0.0094 Score=55.95 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=33.7
Q ss_pred cccccCcccCc--ccCCCCC-cccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 200 DGLYECILCAC--CTTSCPS-YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 200 ~~~~~CI~CG~--C~~aCP~-~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
+....|++|+. |+.+||+ ..... ..++. + .. ....|+.|+.|+.+||.+
T Consensus 88 ~~~~~C~hC~~p~Cv~aCP~~gA~~~---------------~~~G~----------V--~i-d~dkCigC~~Cv~aCP~~ 139 (283)
T TIGR01582 88 IRKDGCMHCREPGCLKACPAPGAIIQ---------------YQNGI----------V--DF-DHSKCIGCGYCIVGCPFN 139 (283)
T ss_pred ECCccCCCCCCccccCCCCcCCeEEE---------------cCCCc----------E--EE-eHHHCCcchHHHhhCCCC
Confidence 34567999998 9999996 22100 00110 0 01 234799999999999999
Q ss_pred CC
Q 045926 277 LD 278 (302)
Q Consensus 277 I~ 278 (302)
+.
T Consensus 140 a~ 141 (283)
T TIGR01582 140 IP 141 (283)
T ss_pred Cc
Confidence 85
No 180
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=94.33 E-value=0.0065 Score=55.22 Aligned_cols=54 Identities=24% Similarity=0.521 Sum_probs=36.1
Q ss_pred ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
..+..+|+.|+.|+.+||..... . .+++ . .. ....|..|+.|..+||.+..
T Consensus 170 ~id~~~C~~C~~C~~aCP~~ai~---------------~-~~~~-------~-----~i-~~~~C~~C~~C~~~CP~~~~ 220 (228)
T TIGR03294 170 VVNQGLCMGCGTCAAACPTRAIE---------------M-EDGR-------P-----NV-NRDRCIKCGACYVQCPRAFW 220 (228)
T ss_pred EEChhhCcChhHHHHhCCHhhEE---------------E-eCCc-------E-----EE-ChhhccCHHHHHHHcCCCCc
Confidence 34567999999999999953210 0 0110 0 01 23479999999999999876
Q ss_pred HHH
Q 045926 279 PAD 281 (302)
Q Consensus 279 ~~~ 281 (302)
+.+
T Consensus 221 ~~~ 223 (228)
T TIGR03294 221 PEY 223 (228)
T ss_pred chh
Confidence 543
No 181
>PRK07118 ferredoxin; Validated
Probab=94.28 E-value=0.01 Score=55.55 Aligned_cols=48 Identities=21% Similarity=0.478 Sum_probs=33.5
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
...||.|+.|+.+||..... +.+... .. ....|+.||.|..+||+++.
T Consensus 212 ~~~Ci~Cg~Cv~~CP~~AI~----------------~~~~~~------------vI-d~~~C~~Cg~C~~~CP~~AI 259 (280)
T PRK07118 212 EVGCIGCGKCVKACPAGAIT----------------MENNLA------------VI-DQEKCTSCGKCVEKCPTKAI 259 (280)
T ss_pred ccccccchHHHhhCCcCcEE----------------EeCCcE------------EE-cCCcCCCHHHHHHhCCcccc
Confidence 46799999999999964321 011100 11 34689999999999999875
No 182
>PRK09898 hypothetical protein; Provisional
Probab=94.27 E-value=0.012 Score=52.63 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=34.2
Q ss_pred cccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 200 DGLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 200 ~~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
.....|++|+ .|+.+||+..... +.... . + .. ....|+.|+.|+.+||.++
T Consensus 118 ~~~~~C~~C~~~~C~~~CP~gAi~~-----------------~~~~g----~---v--~v-d~~~CigC~~C~~aCP~~a 170 (208)
T PRK09898 118 YTADTCRQCKEPQCMNVCPIGAITW-----------------QQKEG----C---I--TV-DHKRCIGCSACTTACPWMM 170 (208)
T ss_pred EeCccCCCccCcchhhhCCcceEEe-----------------eccCC----e---E--Ee-ccccCCCcCcccccCCCCC
Confidence 3456899998 9999999653210 00000 0 0 01 2357999999999999987
Q ss_pred C
Q 045926 278 D 278 (302)
Q Consensus 278 ~ 278 (302)
.
T Consensus 171 i 171 (208)
T PRK09898 171 A 171 (208)
T ss_pred C
Confidence 4
No 183
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=94.24 E-value=0.022 Score=54.26 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=21.5
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHHhh
Q 045926 265 AIKNCTATCPKGLDPADAIHKMKTKHML 292 (302)
Q Consensus 265 ~Cg~C~~vCP~gI~~~~~I~~lR~~l~~ 292 (302)
.||.|..+||.+......|..+=+..+.
T Consensus 268 ~C~~C~~~CPf~~~~~s~iH~vvk~tv~ 295 (314)
T TIGR02486 268 GCGVCQAVCPFNKKPNSWIHDVVRSTVS 295 (314)
T ss_pred CCCCCeeECCCCCCCcchHHHHHHHHhc
Confidence 5999999999997766667766555544
No 184
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.24 E-value=0.013 Score=63.61 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=15.5
Q ss_pred cCcccccccccCCCCCC
Q 045926 262 RCRAIKNCTATCPKGLD 278 (302)
Q Consensus 262 ~C~~Cg~C~~vCP~gI~ 278 (302)
.|..||.|+.+||.+..
T Consensus 922 ~C~~CG~C~~vCP~~a~ 938 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGA 938 (1012)
T ss_pred cccccchHHHhCCCCcc
Confidence 49999999999999875
No 185
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=94.12 E-value=0.01 Score=60.65 Aligned_cols=52 Identities=23% Similarity=0.480 Sum_probs=35.6
Q ss_pred hccccccCcccCccc--CCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926 198 KLDGLYECILCACCT--TSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK 275 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~--~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~ 275 (302)
..-+.++|..|+.|. ..||+..+.+ .+. +.+ + ....|..||.|+++||.
T Consensus 572 ~~Vd~~~CtGC~~C~~~~~Cpsi~~~~-------------------~~~--k~~---i-----d~~~C~GCg~C~~iCP~ 622 (640)
T COG4231 572 YFVDEEKCTGCGDCIVLSGCPSIEPDP-------------------TFK--KAR---I-----DPSSCNGCGSCVEVCPS 622 (640)
T ss_pred ceechhhcCCcHHHHhhcCCceEeecC-------------------CCC--cee---e-----cccccccchhhhhcCch
Confidence 445678999999998 7899865311 000 011 1 23469999999999998
Q ss_pred CCC
Q 045926 276 GLD 278 (302)
Q Consensus 276 gI~ 278 (302)
.+-
T Consensus 623 ~a~ 625 (640)
T COG4231 623 FAI 625 (640)
T ss_pred hhe
Confidence 763
No 186
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.08 E-value=0.036 Score=57.55 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.8
Q ss_pred cccCcccc---cccccCCCCCCHHHHHHHHHH
Q 045926 260 LYRCRAIK---NCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 260 ~~~C~~Cg---~C~~vCP~gI~~~~~I~~lR~ 288 (302)
..+|..|| .|...||.++++.+.|..+++
T Consensus 207 a~rC~~C~~~~~C~~~CP~~~~i~~~~~~~~~ 238 (639)
T PRK12809 207 SDRCVYCAEKANCNWHCPLHNAIPDYIRLVQE 238 (639)
T ss_pred HHHHhCCCCCCcccccCCCCCcHHHHHHHHHC
Confidence 45999999 799999999999999988774
No 187
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=94.01 E-value=0.0036 Score=54.59 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=17.8
Q ss_pred hccccccCcccCcccCCCCCc
Q 045926 198 KLDGLYECILCACCTTSCPSY 218 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~ 218 (302)
.+.+..+|+.|+.|+.+||..
T Consensus 5 ~~~d~~~C~gC~~C~~aC~~~ 25 (181)
T PRK10330 5 IIADASKCIGCRTCEVACVVS 25 (181)
T ss_pred EEeCcccCcCccHHHHHHHHH
Confidence 445778999999999999964
No 188
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.90 E-value=0.017 Score=58.95 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=16.0
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|..+||.++
T Consensus 540 ~~~C~~Cg~C~~~CP~~A 557 (564)
T PRK12771 540 YDKCTGCHICADVCPCGA 557 (564)
T ss_pred cccCcChhHHHhhcCcCc
Confidence 458999999999999876
No 189
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=93.79 E-value=0.018 Score=57.51 Aligned_cols=64 Identities=20% Similarity=0.364 Sum_probs=35.0
Q ss_pred ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
++|+.||+|+.+||.-.. ++|---....++ +..+-. +-+. ..... ..+.|+.||.|..+||.++
T Consensus 224 d~CtgCg~C~~vCPve~~--nefn~Gl~~~kA---iy~p~~----qaVp-~~~~I-d~~~c~~c~~C~~ac~~~a 287 (622)
T COG1148 224 DKCTGCGACSEVCPVEVP--NEFNEGLGKRKA---IYIPFP----QAVP-LNYNI-DPKHCIECGLCEKACPNEA 287 (622)
T ss_pred ccccccccccccCCcccC--ccccccccccee---eeccch----hhcc-ccccc-ChhhhccchhhhhcCCccc
Confidence 799999999999998542 222100000011 011100 0000 11112 4578999999999999544
No 190
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=93.71 E-value=0.022 Score=32.78 Aligned_cols=17 Identities=35% Similarity=0.845 Sum_probs=14.8
Q ss_pred ccccCcccccccccCCC
Q 045926 259 KLYRCRAIKNCTATCPK 275 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~ 275 (302)
....|+.||.|+.+||.
T Consensus 6 D~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 6 DLERCIGCGACEVACPV 22 (22)
T ss_pred ccccccCchhHHHhhCc
Confidence 35689999999999984
No 191
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=93.53 E-value=0.47 Score=34.89 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=38.4
Q ss_pred ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926 57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP 136 (302)
Q Consensus 57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~ 136 (302)
+.|+++++|.- +.+.++++++ ++|+.|.|..++.. + ..++|.+||..+.. .|.
T Consensus 2 ~~mm~v~vng~----------~~~~~~~~~~-~~tv~~ll~~l~~~--~-------------~~v~v~vNg~iv~~-~~~ 54 (70)
T PRK08364 2 MLMIRVKVIGR----------GIEKEIEWRK-GMKVADILRAVGFN--T-------------ESAIAKVNGKVALE-DDP 54 (70)
T ss_pred ceEEEEEEecc----------ccceEEEcCC-CCcHHHHHHHcCCC--C-------------ccEEEEECCEECCC-CcC
Confidence 35788888871 1335666666 89999999988631 1 12799999998754 444
Q ss_pred ccC
Q 045926 137 IDG 139 (302)
Q Consensus 137 v~~ 139 (302)
+.+
T Consensus 55 l~~ 57 (70)
T PRK08364 55 VKD 57 (70)
T ss_pred cCC
Confidence 544
No 192
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=93.41 E-value=0.016 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=19.0
Q ss_pred hhccccccCcccCcccCCCCCccc
Q 045926 197 KKLDGLYECILCACCTTSCPSYWW 220 (302)
Q Consensus 197 ~~~~~~~~CI~CG~C~~aCP~~~~ 220 (302)
....+..+||.||+|+.+||....
T Consensus 76 ~v~V~~ekCiGC~~C~~aCPfGai 99 (165)
T COG1142 76 AVQVDEEKCIGCKLCVVACPFGAI 99 (165)
T ss_pred ceEEchhhccCcchhhhcCCcceE
Confidence 344566799999999999997653
No 193
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=93.11 E-value=0.015 Score=53.60 Aligned_cols=46 Identities=26% Similarity=0.603 Sum_probs=30.7
Q ss_pred ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
..|+.|+.|+.+||..... .+.. .. . .. ....|+.|+.|..+||.+
T Consensus 169 ~~C~~C~~C~~~CP~~vi~-----------------~d~~------~~--~--v~-~~~~C~~C~~C~~~Cp~~ 214 (259)
T cd07030 169 EDCDGCGKCVEECPRGVLE-----------------LEEG------KV--V--VE-DLEDCSLCKLCERACDAG 214 (259)
T ss_pred hhCCChHHHHHhCCccceE-----------------ccCC------ee--E--Ee-ChhhCcCchHHHHhCCCC
Confidence 6799999999999964320 0110 00 0 01 234799999999999954
No 194
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=93.03 E-value=0.021 Score=48.87 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=34.1
Q ss_pred cccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 200 DGLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 200 ~~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
.....|++|+ .|..+||+...... ..++. + .. ....|+.|+.|..+||.++
T Consensus 59 ~~~~~C~~C~~~~C~~~CP~~ai~~~--------------~~~~~----------~--~i-~~~~C~~C~~C~~aCP~~a 111 (161)
T TIGR02951 59 YISISCNHCADPACVKNCPTGAMYKR--------------EEDGL----------V--LV-DQDKCIGCRYCVWACPYGA 111 (161)
T ss_pred EcCccCCCcCCcchHHhCCCCCEEee--------------cCCCc----------E--EE-CHHhCCCchHHHhhCCCCC
Confidence 3457899999 99999996432100 00000 0 01 2357999999999999876
Q ss_pred C
Q 045926 278 D 278 (302)
Q Consensus 278 ~ 278 (302)
.
T Consensus 112 i 112 (161)
T TIGR02951 112 P 112 (161)
T ss_pred c
Confidence 4
No 195
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.98 E-value=0.0099 Score=61.69 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.0
Q ss_pred hccccccCcccCcccCCCCCc
Q 045926 198 KLDGLYECILCACCTTSCPSY 218 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~ 218 (302)
++.+.++|+.|+.|..+|+..
T Consensus 5 ~~~d~~~C~gC~~C~~aC~~~ 25 (639)
T PRK12809 5 IAAEAAECIGCHACEIACAVA 25 (639)
T ss_pred EEEChhhCcChhHHHHHhhhh
Confidence 455778999999999999974
No 196
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=92.85 E-value=0.046 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.654 Sum_probs=22.1
Q ss_pred cCCCCCccCccEEEECCEEeccccc
Q 045926 111 RSCREGICGSCAMNIGGTNTVACLK 135 (302)
Q Consensus 111 ~~C~~g~CG~C~V~VnG~~~laC~t 135 (302)
..|..|+||+|+|.++|..+++|..
T Consensus 215 m~cg~G~C~~C~~~~~~~~~~~C~~ 239 (250)
T PRK00054 215 MKCGIGACGACVCDTETGGKRVCKD 239 (250)
T ss_pred ccCcCcccCcCCcccCCCCEEEeCc
Confidence 4599999999999999987799964
No 197
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.81 E-value=0.036 Score=57.66 Aligned_cols=57 Identities=18% Similarity=0.408 Sum_probs=35.9
Q ss_pred hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc------cccc
Q 045926 198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK------NCTA 271 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg------~C~~ 271 (302)
...+..+|+.|+.|+.+||.....- ....... .. + .. ....|..|+ .|+.
T Consensus 80 ~~id~~~C~~C~~C~~~CP~~ai~~---------------~~~~~~~---~~---~--~~-~~~~C~~C~~~~~~p~Cv~ 135 (654)
T PRK12769 80 IQVNQQKCIGCKSCVVACPFGTMQI---------------VLTPVAA---GK---V--KA-TAHKCDLCAGRENGPACVE 135 (654)
T ss_pred EEEecccccCcChhcccCCccCeee---------------cccCCcc---cc---e--ee-ecCcCcCCCCCCCCCceec
Confidence 3456679999999999999643210 0000000 00 0 01 345899999 9999
Q ss_pred cCCCCCC
Q 045926 272 TCPKGLD 278 (302)
Q Consensus 272 vCP~gI~ 278 (302)
+||+++-
T Consensus 136 ~CP~~Ai 142 (654)
T PRK12769 136 NCPADAL 142 (654)
T ss_pred cCCcCcE
Confidence 9998875
No 198
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=92.69 E-value=0.038 Score=50.78 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=33.1
Q ss_pred cccCcccCc--ccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 202 LYECILCAC--CTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 202 ~~~CI~CG~--C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
...|++|+. |+.+||+..... ..++. + .. ....|+.|+.|+.+||.++.
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~---------------~~~G~----------v--~i-d~~~CigC~~Cv~aCP~~Ai 147 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQ---------------REDGI----------V--VV-DNKRCVGCAYCVQACPYDAR 147 (244)
T ss_pred chhcCCcCCccCccccCCCCEEE---------------CCCCC----------E--EE-cHHHCCCHHHHHHhcCCCCC
Confidence 568999996 999999643110 00110 0 01 23479999999999999875
No 199
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=92.64 E-value=0.046 Score=40.36 Aligned_cols=20 Identities=30% Similarity=0.740 Sum_probs=17.1
Q ss_pred cccccCcccCcccCCCCCcc
Q 045926 200 DGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~ 219 (302)
.....|+.||+|+.+||+..
T Consensus 47 ~~~~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 47 YGEGDCVGCGRCVRVCPAGI 66 (69)
T ss_pred cCCccCCCcChHhhhcCCCC
Confidence 35678999999999999864
No 200
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=92.44 E-value=0.02 Score=52.96 Aligned_cols=47 Identities=28% Similarity=0.635 Sum_probs=31.1
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
...|+.|+.|..+||..... + .++. . .+. ....|+.|+.|..+||.+
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~---------------~-~~~~-------~-~v~----~~~~C~~C~~Ci~~CP~~ 214 (263)
T PRK00783 168 SEDCDECEKCVEACPRGVLE---------------L-KEGK-------L-VVT----DLLNCSLCKLCERACPGK 214 (263)
T ss_pred cccCCchHHHHHhCCccccE---------------e-cCCe-------E-EEe----ChhhCCCchHHHHhCCCC
Confidence 57899999999999964310 0 0110 0 011 234799999999999964
No 201
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=92.34 E-value=0.018 Score=54.50 Aligned_cols=48 Identities=27% Similarity=0.618 Sum_probs=32.8
Q ss_pred ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
+...|..||.|+.+||+.... + ++. .+ .. ....|+.||.|..+||..+
T Consensus 170 ~~E~c~gc~~cv~~C~~gAI~---------------~--~~~---------~l--~i-d~~~Ci~Cg~Ci~~Cp~~~ 217 (317)
T COG2221 170 DEELCRGCGKCVKVCPTGAIT---------------W--DGK---------KL--KI-DGSKCIGCGKCIRACPKAA 217 (317)
T ss_pred CHHHhchhHhHHHhCCCCcee---------------e--ccc---------eE--EE-ehhhccCccHHhhhCChhh
Confidence 456799999999999986521 1 110 01 01 3458999999999999433
No 202
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=92.27 E-value=0.046 Score=37.75 Aligned_cols=17 Identities=29% Similarity=0.872 Sum_probs=12.8
Q ss_pred cCcccccccccCCCCCC
Q 045926 262 RCRAIKNCTATCPKGLD 278 (302)
Q Consensus 262 ~C~~Cg~C~~vCP~gI~ 278 (302)
.|+.||.|+.+||.++.
T Consensus 1 kCi~Cg~C~~~CP~~~~ 17 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVI 17 (55)
T ss_dssp C--TTTHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCe
Confidence 59999999999999875
No 203
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=91.61 E-value=0.14 Score=51.30 Aligned_cols=44 Identities=30% Similarity=0.694 Sum_probs=34.9
Q ss_pred chhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC-C--E---------------Eecccccccc
Q 045926 89 GPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG-G--T---------------NTVACLKPID 138 (302)
Q Consensus 89 g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn-G--~---------------~~laC~t~v~ 138 (302)
|+|||||++++|.. .+.-|. .|.||-|-|.|- | + ..|||++.|.
T Consensus 17 g~~il~aar~~gv~------i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v~ 79 (614)
T COG3894 17 GTTILDAARRLGVY------IRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQVL 79 (614)
T ss_pred CchHHHHHHhhCce------EeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhhc
Confidence 89999999999852 444576 599999999873 3 1 4589999997
No 204
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=91.57 E-value=0.059 Score=51.91 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=15.7
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|..+||.+.
T Consensus 213 ~~~Ci~Cg~Ci~~CP~~a 230 (341)
T TIGR02066 213 VEKCIYCGNCYTMCPAMP 230 (341)
T ss_pred cccCCcCCchHHhCchhh
Confidence 458999999999999854
No 205
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=91.36 E-value=0.13 Score=51.33 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=26.9
Q ss_pred ccccCcccccccccCCCCCCHHHHHHHHHH
Q 045926 259 KLYRCRAIKNCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~ 288 (302)
....|+.||.|+++||.++.|..+++.++.
T Consensus 372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~ 401 (448)
T PRK05352 372 SERAMVPIGNYERVMPLDILPTQLLRALIV 401 (448)
T ss_pred CCcceeecCcHhhcCCCCCCHHHHHHHHHc
Confidence 346899999999999999999999988874
No 206
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=90.96 E-value=0.2 Score=49.95 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=26.7
Q ss_pred ccccCcccccccccCCCCCCHHHHHHHHHH
Q 045926 259 KLYRCRAIKNCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~ 288 (302)
....|+.||.|+++||.++.|..+++.++.
T Consensus 371 ~~~aCI~CG~C~~vCPm~L~P~~L~~a~~~ 400 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLDIPPTLLLKALIA 400 (447)
T ss_pred CccceeECChHhhcCCCCCCHHHHHHHHHc
Confidence 345799999999999999999999988874
No 207
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=90.90 E-value=0.25 Score=43.06 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=16.2
Q ss_pred ccccCcccccccccCCCCC
Q 045926 259 KLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI 277 (302)
.++.|-.|+.|..+||...
T Consensus 151 ~~~~C~~Cr~~~~~~~~~~ 169 (180)
T PRK12387 151 SFETCPECKRQKCLVPSDR 169 (180)
T ss_pred HHhhCHHHhcccccccccc
Confidence 3568999999999999876
No 208
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=90.36 E-value=0.052 Score=37.18 Aligned_cols=17 Identities=35% Similarity=0.878 Sum_probs=11.5
Q ss_pred cccccCcccCcccCCCC
Q 045926 200 DGLYECILCACCTTSCP 216 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP 216 (302)
.+..+||.||.|+.+||
T Consensus 36 ~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 36 IDPERCIGCGACVEVCP 52 (52)
T ss_dssp E-TTT--TTSHHHHH-T
T ss_pred eCcccccccChhhhhCc
Confidence 36678999999999998
No 209
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=90.20 E-value=0.12 Score=36.90 Aligned_cols=16 Identities=38% Similarity=0.966 Sum_probs=11.2
Q ss_pred cccCcccCcccCCCCC
Q 045926 202 LYECILCACCTTSCPS 217 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~ 217 (302)
.+.|+.||.|+.+||+
T Consensus 38 ~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 38 PDKCIGCGLCVKVCPV 53 (59)
T ss_dssp -TT--S-SCCCCCSSS
T ss_pred cccCcCcCcccccCCC
Confidence 5789999999999996
No 210
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=90.17 E-value=0.018 Score=45.59 Aligned_cols=51 Identities=24% Similarity=0.457 Sum_probs=28.7
Q ss_pred ccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926 201 GLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 201 ~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~ 278 (302)
....|.+|- .|+.+||+..... +..+. . + .. ....|+.||.|..+||.++.
T Consensus 5 ~~~~C~hC~~ppC~~~CP~~Ai~~-----------------~~~~G----~---V--~i-d~~~CigC~~C~~aCP~~ai 57 (98)
T PF13247_consen 5 VPVQCRHCEDPPCVEACPTGAIYK-----------------DPEDG----I---V--VI-DEDKCIGCGYCVEACPYGAI 57 (98)
T ss_dssp EEEC---BSS-HHHHHCTTTSEEE-----------------ETTTS--------E--EE--TTTCCTHHHHHHH-TTS-E
T ss_pred eCCcCcCcCCCchhhhCCccceEE-----------------EcCCC----e---E--Ee-chhhccCchhhhhhhccCcc
Confidence 356799997 9999999865211 11000 0 1 11 34589999999999999875
No 211
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=89.97 E-value=0.11 Score=45.32 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=18.2
Q ss_pred cccccCcccCcccCCCCCccc
Q 045926 200 DGLYECILCACCTTSCPSYWW 220 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~ 220 (302)
.++.+||-||.|+.+||+...
T Consensus 92 In~grCIfCg~C~e~CPt~Al 112 (172)
T COG1143 92 INLGRCIFCGLCVEVCPTGAL 112 (172)
T ss_pred eccccccccCchhhhCchhhh
Confidence 357799999999999998764
No 212
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=89.81 E-value=0.03 Score=39.67 Aligned_cols=17 Identities=24% Similarity=0.726 Sum_probs=11.8
Q ss_pred cCcccccccccCCCCCC
Q 045926 262 RCRAIKNCTATCPKGLD 278 (302)
Q Consensus 262 ~C~~Cg~C~~vCP~gI~ 278 (302)
.|+.||.|+.+||+++.
T Consensus 1 ~C~~Cg~C~~~CP~~~~ 17 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIA 17 (61)
T ss_dssp T----STTGGGSHHHHH
T ss_pred CCCCCCcCcccCCCccc
Confidence 49999999999998887
No 213
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=89.79 E-value=0.07 Score=38.45 Aligned_cols=18 Identities=28% Similarity=0.722 Sum_probs=15.7
Q ss_pred cCcccccccccCCCCCCH
Q 045926 262 RCRAIKNCTATCPKGLDP 279 (302)
Q Consensus 262 ~C~~Cg~C~~vCP~gI~~ 279 (302)
.|..||.|+++||.++-.
T Consensus 1 ~C~~C~~C~~~CP~~AI~ 18 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAIS 18 (67)
T ss_pred CCcchhHHHHhCcHhhcc
Confidence 499999999999998853
No 214
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=89.51 E-value=0.11 Score=46.53 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=34.7
Q ss_pred cccccCccc--CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 200 DGLYECILC--ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 200 ~~~~~CI~C--G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
.-...|.+| --|+.+||+..... .-.|+- + .. ....|+.||.|..+||.|+
T Consensus 64 ~~~~~C~HC~~ppCv~vCPtgA~~k--------------~~~dGi----------V--~v-d~d~CIGC~yCi~ACPyga 116 (203)
T COG0437 64 YLSISCMHCEDPPCVKVCPTGALFK--------------REEDGI----------V--LV-DKDLCIGCGYCIAACPYGA 116 (203)
T ss_pred EecccccCCCCCcccccCCCcceEE--------------ecCCCE----------E--Ee-cCCcccCchHHHhhCCCCC
Confidence 334579999 67999999864210 001221 0 11 3468999999999999999
Q ss_pred C
Q 045926 278 D 278 (302)
Q Consensus 278 ~ 278 (302)
.
T Consensus 117 ~ 117 (203)
T COG0437 117 P 117 (203)
T ss_pred c
Confidence 6
No 215
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=89.40 E-value=0.27 Score=47.30 Aligned_cols=65 Identities=20% Similarity=0.383 Sum_probs=36.3
Q ss_pred ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
+.|-.|.+|..+||+........+.+.--+. +.....+.. ..+....+. . .++ .|+-|..+||.+
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~~~~~cis-~lt~~~~~~--p~e~r~~~~--n-~iy---gCd~C~~vCPwn 249 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVDARRCIS-YLTIEKGGA--PEEFRPLIG--N-RIY---GCDICQKVCPWN 249 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCccchhHHhh-hhhhhccCC--cHHHHHhcc--C-cee---cCchHHHhCCcc
Confidence 6799999999999998765443333322211 111111111 122222121 1 334 789999999976
No 216
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=89.27 E-value=0.12 Score=44.54 Aligned_cols=21 Identities=29% Similarity=0.754 Sum_probs=18.2
Q ss_pred cccccCcccCcccCCCCCccc
Q 045926 200 DGLYECILCACCTTSCPSYWW 220 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~~ 220 (302)
.|+.+||-||.|+.+||+-..
T Consensus 147 IDmtkCIyCG~CqEaCPvdai 167 (212)
T KOG3256|consen 147 IDMTKCIYCGFCQEACPVDAI 167 (212)
T ss_pred ccceeeeeecchhhhCCccce
Confidence 468899999999999998653
No 217
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=88.91 E-value=0.11 Score=40.99 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=17.0
Q ss_pred ccccCcccccccccCCCCCC
Q 045926 259 KLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~ 278 (302)
....|+.||.|..+||.+..
T Consensus 59 d~e~CigCg~C~~~C~~~~~ 78 (95)
T PRK15449 59 DYAGCLECGTCRILGLGSAL 78 (95)
T ss_pred cCCCCCcchhhhhhcCCCCc
Confidence 34589999999999998864
No 218
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=88.44 E-value=0.079 Score=36.35 Aligned_cols=17 Identities=29% Similarity=0.837 Sum_probs=10.8
Q ss_pred cCcccccccccCCCCCC
Q 045926 262 RCRAIKNCTATCPKGLD 278 (302)
Q Consensus 262 ~C~~Cg~C~~vCP~gI~ 278 (302)
+|+.||.|+.+||.++-
T Consensus 1 ~C~~C~~C~~~CP~~~i 17 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAI 17 (52)
T ss_dssp C-SS--HHHHH-TTHHC
T ss_pred CCCCcCchHHhcCcccc
Confidence 59999999999997653
No 219
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=88.39 E-value=0.19 Score=50.00 Aligned_cols=20 Identities=35% Similarity=0.786 Sum_probs=17.6
Q ss_pred cccCcccccccccCCCCCCH
Q 045926 260 LYRCRAIKNCTATCPKGLDP 279 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~~ 279 (302)
...|+.|+.|+.+||.+++.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~~ 249 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGIDI 249 (434)
T ss_pred CCCCCChhhhHHhCCCCCEe
Confidence 46899999999999999853
No 220
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=88.05 E-value=0.39 Score=43.86 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=26.3
Q ss_pred ccccCcccccccccCCCC-CC----HHHHHHHHHHHHhhc
Q 045926 259 KLYRCRAIKNCTATCPKG-LD----PADAIHKMKTKHMLS 293 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~g-I~----~~~~I~~lR~~l~~~ 293 (302)
.++.|+.||.|+.+||.- .+ -..++..+.+.+.+.
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~~~~~f~GPa~l~~a~R~~~D~ 179 (234)
T COG0479 140 ELSECILCGCCTAACPSIWWNPDFLGPAALRQAYRFLADS 179 (234)
T ss_pred hhhhccccchhhhhCCccccccCCcCHHHHHHHHHHhcCC
Confidence 678999999999999943 33 245677777777665
No 221
>PRK01777 hypothetical protein; Validated
Probab=88.04 E-value=4.2 Score=31.96 Aligned_cols=64 Identities=11% Similarity=0.042 Sum_probs=40.1
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccC-CCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETD-SSLSYRRSCREGICGSCAMNIGGTNTVACLKPI 137 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~d-ptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v 137 (302)
+++|.|.=--|+ .+....+++++ |+|+-||+...|.... |.+.+. ...|-|||+.+.. .+.+
T Consensus 3 ~i~v~V~ya~~~------~~~~~~l~vp~-GtTv~dal~~sgi~~~~pei~~~---------~~~vgI~Gk~v~~-d~~L 65 (95)
T PRK01777 3 KIRVEVVYALPE------RQYLQRLTLQE-GATVEEAIRASGLLELRTDIDLA---------KNKVGIYSRPAKL-TDVL 65 (95)
T ss_pred eeEEEEEEECCC------ceEEEEEEcCC-CCcHHHHHHHcCCCccCcccccc---------cceEEEeCeECCC-CCcC
Confidence 566666653332 34557788888 9999999999874211 222221 1478899987643 4455
Q ss_pred cC
Q 045926 138 DG 139 (302)
Q Consensus 138 ~~ 139 (302)
.+
T Consensus 66 ~d 67 (95)
T PRK01777 66 RD 67 (95)
T ss_pred CC
Confidence 54
No 222
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=88.00 E-value=0.38 Score=43.39 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=24.1
Q ss_pred cccccCCCCCccCccEEEECCEEeccccc
Q 045926 107 LSYRRSCREGICGSCAMNIGGTNTVACLK 135 (302)
Q Consensus 107 L~~~~~C~~g~CG~C~V~VnG~~~laC~t 135 (302)
+.-+-.|..|+||+|.|..+|...++|..
T Consensus 210 ~~~~m~Cg~G~C~~C~~~~~~~~~~~C~~ 238 (243)
T cd06192 210 NNSPMCCGIGICGACTIETKHGVKRLCKD 238 (243)
T ss_pred CCccccCccccccceEEEeCCCeEEEeCC
Confidence 44455699999999999998887899974
No 223
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=87.63 E-value=0.38 Score=43.68 Aligned_cols=26 Identities=31% Similarity=0.833 Sum_probs=21.3
Q ss_pred ccCCCCCccCccEEEECCEEeccccc
Q 045926 110 RRSCREGICGSCAMNIGGTNTVACLK 135 (302)
Q Consensus 110 ~~~C~~g~CG~C~V~VnG~~~laC~t 135 (302)
+-.|..|+||+|+|+..|...+.|..
T Consensus 213 ~m~Cg~G~C~~C~~~~~~~~~~~C~~ 238 (248)
T cd06219 213 IMVDGTGMCGACRVTVGGETKFACVD 238 (248)
T ss_pred cccCccceeeeEEEEeCCCEEEEeCc
Confidence 34699999999999998855678864
No 224
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=87.50 E-value=2.1 Score=30.69 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=31.4
Q ss_pred EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEe---ccccccccCCCCCceEE
Q 045926 83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNT---VACLKPIDGDTSKPTII 147 (302)
Q Consensus 83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~---laC~t~v~~~~~~~~~I 147 (302)
+++.+ |.||.++|..++. .+. ..+|++||..+ ..+.+.+.+ ++.+.|
T Consensus 10 ~~~~~-~~tl~~lL~~l~~--~~~-------------~vav~vNg~iv~r~~~~~~~l~~--gD~vei 59 (66)
T PRK05659 10 RELPD-GESVAALLAREGL--AGR-------------RVAVEVNGEIVPRSQHASTALRE--GDVVEI 59 (66)
T ss_pred EEcCC-CCCHHHHHHhcCC--CCC-------------eEEEEECCeEeCHHHcCcccCCC--CCEEEE
Confidence 34445 8999999998763 111 15799999644 478888887 344443
No 225
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=87.36 E-value=0.29 Score=43.32 Aligned_cols=32 Identities=31% Similarity=0.594 Sum_probs=26.0
Q ss_pred cccCcccccccccCCCCCC----HHHHHHHHHHHHh
Q 045926 260 LYRCRAIKNCTATCPKGLD----PADAIHKMKTKHM 291 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~----~~~~I~~lR~~l~ 291 (302)
+..|.+||.|+..||.+.- +.++|+.++.-+.
T Consensus 38 l~~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~~ 73 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGLV 73 (195)
T ss_pred HhHhhccCcccCCCCCcccCCCCHHHHHHHHHcccH
Confidence 4579999999999998764 8888888876544
No 226
>PRK05802 hypothetical protein; Provisional
Probab=86.90 E-value=0.52 Score=44.92 Aligned_cols=33 Identities=36% Similarity=0.829 Sum_probs=26.8
Q ss_pred CcccccCCCCCccCccEEEECCEE-ecccccccc
Q 045926 106 SLSYRRSCREGICGSCAMNIGGTN-TVACLKPID 138 (302)
Q Consensus 106 tL~~~~~C~~g~CG~C~V~VnG~~-~laC~t~v~ 138 (302)
+|.-+-.|..|+||+|+|.++|.. .+.|...++
T Consensus 285 Sle~~M~CG~G~Cg~C~v~~~g~~~~r~Ck~q~~ 318 (320)
T PRK05802 285 SNNAKMCCGEGICGACTVRYGGHKVKRLCKVQVD 318 (320)
T ss_pred eCCCeeeCcCccCCeeEEEECCEEEEEEeeeecC
Confidence 455566799999999999999853 588998775
No 227
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=86.21 E-value=0.48 Score=43.04 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=29.6
Q ss_pred HHHHHHHcccccCCCccccc--CCCCCccCccEEEEC---CEEeccccc
Q 045926 92 VLDALQKIKAETDSSLSYRR--SCREGICGSCAMNIG---GTNTVACLK 135 (302)
Q Consensus 92 vLdal~~i~~~~dptL~~~~--~C~~g~CG~C~V~Vn---G~~~laC~t 135 (302)
+.++|++.|. ...++... -|..|+||.|.+... |.+.++|..
T Consensus 195 ~~~~L~~~Gv--~~~~~~~~~~~~~~g~c~~c~~~~~~~~~~~~~~c~~ 241 (246)
T cd06218 195 VAELAAERGV--PCQVSLEERMACGIGACLGCVVKTKDDEGGYKRVCKD 241 (246)
T ss_pred HHHHHHhcCC--CEEEEecccccCccceecccEEEeecCCCccEEEeCc
Confidence 4444555542 33344443 399999999999997 999999974
No 228
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=85.86 E-value=0.035 Score=38.63 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=11.9
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
+..|+.||.|..+||...
T Consensus 2 ~~~Ci~Cg~C~~~CP~~~ 19 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVYR 19 (57)
T ss_dssp HHC--S-SHHHHCSHHHH
T ss_pred HHHccCccChHHHChhhh
Confidence 357999999999999433
No 229
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=85.64 E-value=0.59 Score=43.46 Aligned_cols=43 Identities=28% Similarity=0.529 Sum_probs=29.8
Q ss_pred HHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccc
Q 045926 92 VLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACL 134 (302)
Q Consensus 92 vLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~ 134 (302)
+.++|++.+....-+|.-+-.|..|+||.|+|...|...+.|.
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~~~~~~~~C~ 238 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTVGGETKFACV 238 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEECCCEEEEeC
Confidence 3344444443223356667789999999999999885567887
No 230
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=85.63 E-value=0.5 Score=42.43 Aligned_cols=21 Identities=43% Similarity=1.023 Sum_probs=18.3
Q ss_pred CCCCCccCccEEEECCEEecccc
Q 045926 112 SCREGICGSCAMNIGGTNTVACL 134 (302)
Q Consensus 112 ~C~~g~CG~C~V~VnG~~~laC~ 134 (302)
.|..|+||+|.|..+|+ ++|.
T Consensus 202 ~cg~g~C~~C~v~~~~~--~~c~ 222 (233)
T cd06220 202 KCGIGICGSCCIDPTGL--RVCR 222 (233)
T ss_pred cCcCCCcCccEeccCCe--EEeC
Confidence 49999999999999984 6775
No 231
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=85.58 E-value=0.25 Score=37.71 Aligned_cols=19 Identities=26% Similarity=0.691 Sum_probs=16.3
Q ss_pred ccccCcccccccccCCCCC
Q 045926 259 KLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI 277 (302)
....|+.||.|+.+||.++
T Consensus 27 ~~~~Ci~Cg~C~~~CP~~a 45 (99)
T COG1145 27 DAEKCIGCGLCVKVCPTGA 45 (99)
T ss_pred CccccCCCCCchhhCCHHH
Confidence 3457999999999999984
No 232
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=85.13 E-value=0.22 Score=51.90 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.6
Q ss_pred HHhhccccccCcccCcccCCCCCcc
Q 045926 195 DRKKLDGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 195 ~~~~~~~~~~CI~CG~C~~aCP~~~ 219 (302)
...+.+|.++||+||+|+.+|...+
T Consensus 608 ~~~i~~D~~kCI~CgrCv~~C~ev~ 632 (652)
T PRK12814 608 NGDIRFEREKCVDCGICVRTLEEYG 632 (652)
T ss_pred CCCeEeccccccCchHHHHHHHHhc
Confidence 3457789999999999999999776
No 233
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=84.77 E-value=0.65 Score=30.63 Aligned_cols=24 Identities=25% Similarity=0.720 Sum_probs=18.5
Q ss_pred cCCCCCccCccEEEECCE--Eecccc
Q 045926 111 RSCREGICGSCAMNIGGT--NTVACL 134 (302)
Q Consensus 111 ~~C~~g~CG~C~V~VnG~--~~laC~ 134 (302)
-.|..|+|+.|.|.+.+. ..+.|.
T Consensus 4 M~CG~G~C~~C~v~~~~~~~~~~vC~ 29 (40)
T PF10418_consen 4 MACGVGACGGCVVPVKDGDGYKRVCK 29 (40)
T ss_dssp -SSSSSSS-TTEEECSSTTSEEETTT
T ss_pred ccCCCcEeCCcEeeeecCCcCEEEeC
Confidence 469999999999999864 667775
No 234
>PLN00071 photosystem I subunit VII; Provisional
Probab=84.65 E-value=0.29 Score=36.75 Aligned_cols=19 Identities=26% Similarity=0.920 Sum_probs=16.0
Q ss_pred cccCcccCcccCCCCCccc
Q 045926 202 LYECILCACCTTSCPSYWW 220 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~ 220 (302)
...|+.||.|+.+||+...
T Consensus 45 ~~~C~~Cg~C~~~CP~~Ai 63 (81)
T PLN00071 45 TEDCVGCKRCESACPTDFL 63 (81)
T ss_pred CCcCcChhhHHhhcCCccc
Confidence 4579999999999997653
No 235
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=84.41 E-value=0.25 Score=45.55 Aligned_cols=18 Identities=22% Similarity=0.641 Sum_probs=16.1
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.|+.|.++||.++
T Consensus 200 ~~~C~~C~~C~~vCP~~~ 217 (255)
T TIGR02163 200 REKCTNCMDCFNVCPEPQ 217 (255)
T ss_pred cccCeEcCCccCcCCCCc
Confidence 458999999999999885
No 236
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=84.25 E-value=0.49 Score=49.81 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=23.3
Q ss_pred cccCcccccccccCCCCCCHHHHHHHHH
Q 045926 260 LYRCRAIKNCTATCPKGLDPADAIHKMK 287 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~~~~~I~~lR 287 (302)
...|+.||.|+.+||.++.+..+.+.++
T Consensus 369 e~~CI~CG~Cv~aCP~~llP~~l~~~~~ 396 (695)
T PRK05035 369 EQPCIRCGACADACPASLLPQQLYWFAK 396 (695)
T ss_pred hhhcCCcccHHHHCCccchhhhHHHhhh
Confidence 4689999999999999998877665444
No 237
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=83.82 E-value=0.44 Score=44.50 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=30.7
Q ss_pred HHHHHHHcccc---cCCCcccccCCCCCccCccEEEECCEEeccccc
Q 045926 92 VLDALQKIKAE---TDSSLSYRRSCREGICGSCAMNIGGTNTVACLK 135 (302)
Q Consensus 92 vLdal~~i~~~---~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t 135 (302)
+.++|...|.. .--+|.++-.|..|.||+|.|..++-..++|..
T Consensus 227 v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~~~~~c~~ 273 (289)
T PRK08345 227 VFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTSIKYVCKD 273 (289)
T ss_pred HHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCcceEEeCC
Confidence 55555555421 233577778899999999999988754578863
No 238
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=83.66 E-value=0.39 Score=37.94 Aligned_cols=18 Identities=39% Similarity=0.979 Sum_probs=16.0
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|+.+||.++
T Consensus 15 ~~~Ci~C~~Cv~aCP~~a 32 (103)
T PRK09626 15 ESRCKACDICVSVCPAGV 32 (103)
T ss_pred cccccCCcchhhhcChhh
Confidence 458999999999999876
No 239
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=83.54 E-value=0.34 Score=44.20 Aligned_cols=60 Identities=28% Similarity=0.601 Sum_probs=42.2
Q ss_pred hhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926 197 KKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 197 ~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g 276 (302)
..+.+-.-|+.||.|.++||+.... ..||. . ....|..||.|...||+.
T Consensus 184 ~ll~qg~~C~G~~TC~A~CP~~ai~---c~Gc~---------------------------g-~~~~~~~~Ga~~v~~~rs 232 (247)
T COG1941 184 CLLEQGLPCMGCGTCAASCPSRAIP---CRGCR---------------------------G-NIPRCIKCGACFVSCPRS 232 (247)
T ss_pred eeecCCCcccCchhhhccCCccCCc---ccCCc---------------------------C-CcccchhhhHHHHHHhHH
Confidence 3444455899999999999986521 11111 0 345799999999999999
Q ss_pred CCHHHHHHHHHH
Q 045926 277 LDPADAIHKMKT 288 (302)
Q Consensus 277 I~~~~~I~~lR~ 288 (302)
+-+ +++++|..
T Consensus 233 ~~~-ei~~~l~~ 243 (247)
T COG1941 233 KGP-EIIEELKD 243 (247)
T ss_pred hhH-HHHHHhhh
Confidence 876 77766643
No 240
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=83.39 E-value=1 Score=39.48 Aligned_cols=18 Identities=39% Similarity=0.947 Sum_probs=15.7
Q ss_pred cccCcccCcccCCCCCcc
Q 045926 202 LYECILCACCTTSCPSYW 219 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~ 219 (302)
...|+.||.|+.+||+..
T Consensus 72 ~~~C~~Cg~C~~~CPt~A 89 (181)
T PRK08222 72 LGRCIYCGRCEEVCPTRA 89 (181)
T ss_pred cCcCcCCCCcccccCcCe
Confidence 458999999999999854
No 241
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=82.60 E-value=0.5 Score=35.43 Aligned_cols=19 Identities=21% Similarity=0.646 Sum_probs=16.5
Q ss_pred ccccCcccccccccCCCCC
Q 045926 259 KLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI 277 (302)
....|+.||.|+.+||.++
T Consensus 6 ~~~~Ci~C~~Cv~~CP~~~ 24 (80)
T TIGR03048 6 IYDTCIGCTQCVRACPTDV 24 (80)
T ss_pred cCCcCcCcchHHHHCCccc
Confidence 3468999999999999875
No 242
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=82.49 E-value=0.75 Score=45.72 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.0
Q ss_pred ccccCcccccccccCCCCCCHHHHHH
Q 045926 259 KLYRCRAIKNCTATCPKGLDPADAIH 284 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~ 284 (302)
....|+.||.|+.+||.++.+..+++
T Consensus 361 ~~~~Ci~Cg~C~~vCP~~l~p~~l~~ 386 (435)
T TIGR01945 361 PEKPCIRCGKCVQVCPMNLLPQQLNW 386 (435)
T ss_pred cCCcCcCccchhhhCccchhhHHHHH
Confidence 55799999999999999988766544
No 243
>PRK02651 photosystem I subunit VII; Provisional
Probab=82.24 E-value=0.31 Score=36.43 Aligned_cols=28 Identities=32% Similarity=0.821 Sum_probs=19.5
Q ss_pred cccCcccCcccCCCCCcccCCCCcccHH
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGPA 229 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~ 229 (302)
...|+.||.|+.+||.....-..|++|+
T Consensus 45 ~~~C~~Cg~C~~~CP~~ai~~~~~~~~~ 72 (81)
T PRK02651 45 TEDCVGCKRCETACPTDFLSIRVYLGAE 72 (81)
T ss_pred CCcCCChhhhhhhcCCCceEEEEEeccc
Confidence 3579999999999997543223355543
No 244
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=82.22 E-value=0.41 Score=36.55 Aligned_cols=19 Identities=16% Similarity=0.532 Sum_probs=16.2
Q ss_pred ccccCcccccccccCCCCC
Q 045926 259 KLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI 277 (302)
....|+.||.|+.+||.++
T Consensus 19 ~~~~Ci~C~~Cv~~CP~~~ 37 (91)
T TIGR02936 19 DQEKCIGCGRCYKVCGRDV 37 (91)
T ss_pred CHhHCCCcchHHHHcChhh
Confidence 3458999999999999775
No 245
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=82.21 E-value=0.5 Score=38.30 Aligned_cols=18 Identities=28% Similarity=0.931 Sum_probs=16.2
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|+.+||.++
T Consensus 41 ~~~Ci~C~~C~~~CP~~a 58 (120)
T PRK08348 41 VDKCVGCRMCVTVCPAGV 58 (120)
T ss_pred cccCcCcccHHHHCCccc
Confidence 458999999999999876
No 246
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=81.86 E-value=0.69 Score=47.29 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=24.8
Q ss_pred cccCcccccccccCCCCCCHHHHHHHHH
Q 045926 260 LYRCRAIKNCTATCPKGLDPADAIHKMK 287 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~~~~~I~~lR 287 (302)
...|+.||.|+.+||.++++.+.+....
T Consensus 399 a~kc~~cG~C~~~CP~~l~i~eam~~A~ 426 (772)
T COG1152 399 ARKCTYCGNCMRACPNELDIPEAMEYAA 426 (772)
T ss_pred HHhcccccchhccCCcccchHHHHHHhh
Confidence 4689999999999999999999887654
No 247
>CHL00065 psaC photosystem I subunit VII
Probab=81.84 E-value=0.48 Score=35.57 Aligned_cols=18 Identities=22% Similarity=0.720 Sum_probs=15.9
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|+.+||.++
T Consensus 8 ~~~Ci~Cg~C~~~CP~~~ 25 (81)
T CHL00065 8 YDTCIGCTQCVRACPTDV 25 (81)
T ss_pred cccCCChhHHHHHCCccc
Confidence 358999999999999876
No 248
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=81.69 E-value=0.8 Score=37.01 Aligned_cols=29 Identities=28% Similarity=0.612 Sum_probs=19.4
Q ss_pred cccCccc--ccccccCCCCCCHHHHHHHHHH
Q 045926 260 LYRCRAI--KNCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 260 ~~~C~~C--g~C~~vCP~gI~~~~~I~~lR~ 288 (302)
...|+.| --|+..||.++|+.+.|..++.
T Consensus 21 a~rC~~c~~~pC~~aCP~~~dip~~i~~i~~ 51 (111)
T PF14691_consen 21 ASRCLQCEDPPCQAACPAHIDIPEYIRLIRE 51 (111)
T ss_dssp HHHS---TT-HHHHTSTT---HHHHHHHHHC
T ss_pred HhhccCCCCCCcccCCCCCCcHHHHHHHHHC
Confidence 4589999 6899999999999999998874
No 249
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=81.68 E-value=0.6 Score=40.02 Aligned_cols=19 Identities=42% Similarity=0.705 Sum_probs=16.4
Q ss_pred ccccCcccccccccCCCCC
Q 045926 259 KLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI 277 (302)
....|+.||.|+.+||.++
T Consensus 56 ~~~~Ci~C~~C~~~CP~~a 74 (164)
T PRK05888 56 GEERCIACKLCAAICPADA 74 (164)
T ss_pred CCccCCcccChHHHcCccc
Confidence 4458999999999999875
No 250
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=81.46 E-value=0.57 Score=40.56 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=16.9
Q ss_pred cccCcccccccccCCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~ 278 (302)
...|+.||.|+.+||.|+-
T Consensus 81 ~ekCiGC~~C~~aCPfGai 99 (165)
T COG1142 81 EEKCIGCKLCVVACPFGAI 99 (165)
T ss_pred hhhccCcchhhhcCCcceE
Confidence 3589999999999999985
No 251
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=81.42 E-value=1.3 Score=37.07 Aligned_cols=19 Identities=32% Similarity=0.864 Sum_probs=16.3
Q ss_pred ccccCcccCcccCCCCCcc
Q 045926 201 GLYECILCACCTTSCPSYW 219 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~ 219 (302)
.+..|..||.|..+||...
T Consensus 44 ~~~~C~~Cg~C~~~CP~~i 62 (144)
T TIGR03290 44 DLWMCTTCYTCQERCPRDV 62 (144)
T ss_pred CCCcCcCcCchhhhcCCCC
Confidence 3568999999999999865
No 252
>COG1146 Ferredoxin [Energy production and conversion]
Probab=80.43 E-value=0.61 Score=33.86 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=18.1
Q ss_pred hccccccCcccCcccCCCCCcc
Q 045926 198 KLDGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~ 219 (302)
.....+.|+.||.|..+||+..
T Consensus 36 ~~~~~e~C~~C~~C~~~CP~~a 57 (68)
T COG1146 36 VVARPEECIDCGLCELACPVGA 57 (68)
T ss_pred eEeccccCccchhhhhhCCcce
Confidence 3456678999999999999863
No 253
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=80.42 E-value=0.72 Score=39.78 Aligned_cols=19 Identities=32% Similarity=0.747 Sum_probs=16.6
Q ss_pred cccCcccccccccCCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~ 278 (302)
...|+.||.|+.+||.++.
T Consensus 58 ~~~Ci~Cg~C~~aCP~~~~ 76 (167)
T CHL00014 58 FDKCIACEVCVRVCPIDLP 76 (167)
T ss_pred cccCCCcCcHHHhCCCCCc
Confidence 4579999999999999863
No 254
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=80.18 E-value=0.81 Score=40.15 Aligned_cols=18 Identities=33% Similarity=0.807 Sum_probs=16.3
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|+.+||.++
T Consensus 61 ~~kCi~Cg~C~~aCP~~a 78 (183)
T TIGR00403 61 FDKCIACEVCVRVCPINL 78 (183)
T ss_pred cccCcCcCChhhhCCCCc
Confidence 458999999999999986
No 255
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=80.02 E-value=0.61 Score=33.60 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=16.3
Q ss_pred ccccCcccCcccCCCCCcc
Q 045926 201 GLYECILCACCTTSCPSYW 219 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~ 219 (302)
+...|+.||.|+..||.+.
T Consensus 4 D~~~C~gcg~C~~~aP~vF 22 (65)
T PF13459_consen 4 DRDRCIGCGLCVELAPEVF 22 (65)
T ss_pred ecccCcCccHHHhhCCccE
Confidence 4578999999999999654
No 256
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=80.00 E-value=1.1 Score=40.19 Aligned_cols=20 Identities=30% Similarity=0.969 Sum_probs=17.0
Q ss_pred cccccCcccCcccCCCCCcc
Q 045926 200 DGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~ 219 (302)
.++..|+.||.|+.+||...
T Consensus 191 ~~~~~C~~Cg~C~~~CP~~I 210 (220)
T TIGR00384 191 NGVWRCTTCMNCSEVCPKGV 210 (220)
T ss_pred CCCccCccccccccccCCCC
Confidence 45778999999999999743
No 257
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=79.80 E-value=1.4 Score=42.49 Aligned_cols=19 Identities=37% Similarity=1.034 Sum_probs=16.3
Q ss_pred ccccCcccCcccCCCCCcc
Q 045926 201 GLYECILCACCTTSCPSYW 219 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~ 219 (302)
+...|+.||+|..+||+..
T Consensus 305 g~~~CvgCGrC~~~CP~~I 323 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYI 323 (344)
T ss_pred chhhCcCcCccccccCCCC
Confidence 4568999999999999854
No 258
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=79.77 E-value=1.4 Score=40.26 Aligned_cols=31 Identities=26% Similarity=0.623 Sum_probs=22.1
Q ss_pred ccccCcccccccccCCCC------C-CHHHHHHHHHHH
Q 045926 259 KLYRCRAIKNCTATCPKG------L-DPADAIHKMKTK 289 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~g------I-~~~~~I~~lR~~ 289 (302)
....|+.||.|..+||+- . -|..++..+|..
T Consensus 142 ~~~~CI~CG~C~s~CP~~~~~~~~f~GP~~~~~a~r~~ 179 (235)
T PRK12575 142 GLYECILCACCSTACPSYWWNPDKFVGPAGLLQAYRFI 179 (235)
T ss_pred hhhhCcccccccccccCccccCCCcCCHHHHHHHHHHH
Confidence 567999999999999963 1 255555555543
No 259
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=79.29 E-value=1.7 Score=42.27 Aligned_cols=27 Identities=19% Similarity=0.623 Sum_probs=22.9
Q ss_pred cCcccccccccCCCCCCHHHHHHHHHHH
Q 045926 262 RCRAIKNCTATCPKGLDPADAIHKMKTK 289 (302)
Q Consensus 262 ~C~~Cg~C~~vCP~gI~~~~~I~~lR~~ 289 (302)
.|+.|+.|.. ||.||++...+.-+...
T Consensus 294 ~Ct~C~yC~P-CP~gInIP~~f~lyN~~ 320 (391)
T COG1453 294 PCTGCRYCLP-CPSGINIPEIFRLYNLA 320 (391)
T ss_pred CCccccccCc-CCCCCChHHHHHHHHHH
Confidence 4999999999 99999999877665543
No 260
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=79.24 E-value=1.5 Score=41.01 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=16.0
Q ss_pred ccccCcccccccccCCCC
Q 045926 259 KLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~g 276 (302)
....|+.||.|..+||..
T Consensus 150 ~~~~CI~CG~C~~~CP~~ 167 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVV 167 (279)
T ss_pred cchhCcccCcccccCCCc
Confidence 457899999999999975
No 261
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=79.23 E-value=0.59 Score=37.75 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=15.6
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|+.+||.++
T Consensus 42 ~~~Ci~C~~C~~~CP~~a 59 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADA 59 (122)
T ss_pred cCcCcCcchhhhhcCHhH
Confidence 468999999999999654
No 262
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=79.01 E-value=1.4 Score=40.54 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=17.4
Q ss_pred ccccCcccccccccCCCCCC
Q 045926 259 KLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~ 278 (302)
....|+.||.|..+||+...
T Consensus 150 ~~~~CI~CG~C~saCP~~~~ 169 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVNE 169 (249)
T ss_pred hhhhccCcCcccccCCCCcc
Confidence 56799999999999997764
No 263
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=78.94 E-value=0.65 Score=36.63 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=32.2
Q ss_pred ccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926 201 GLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 201 ~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI 277 (302)
+...|..|- .|+.+||..- |.+..+++- .. ....|+.||.|--+||...
T Consensus 31 ~~~~~~~~~~~~l~~aCPA~~---------------Y~~~~~g~l------------~~-~yegClECGTCRvlc~~~~ 81 (99)
T COG2440 31 DPDDCQECEDKPLIKACPAGC---------------YKLIDDGKL------------RF-DYEGCLECGTCRVLCPHSG 81 (99)
T ss_pred CchhhhhccchhhhhcCCHHH---------------eeECCCCcE------------EE-eecCeeeccceeEecCCCc
Confidence 355688888 9999999643 222222211 11 3358999999999999843
No 264
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=78.84 E-value=1.2 Score=47.00 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=23.3
Q ss_pred ccccCcccccccccCCCCCCHHHHHHHHH
Q 045926 259 KLYRCRAIKNCTATCPKGLDPADAIHKMK 287 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR 287 (302)
....|+.||.|..+||.++.+.+.+..+.
T Consensus 363 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~ 391 (731)
T cd01916 363 LAAKCTDCGWCTRACPNSLRIKEAMEAAK 391 (731)
T ss_pred hhhcCCCCCcccccCCCCCcHHHHHHHHh
Confidence 45689999999999999988766665443
No 265
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=78.80 E-value=1.5 Score=42.19 Aligned_cols=19 Identities=37% Similarity=1.006 Sum_probs=16.6
Q ss_pred ccccCcccCcccCCCCCcc
Q 045926 201 GLYECILCACCTTSCPSYW 219 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~ 219 (302)
+...|+.||+|..+||+..
T Consensus 299 G~~~CvgCGrC~~~CP~~i 317 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEYI 317 (334)
T ss_pred CccccCCcCchhhhCCCCC
Confidence 4668999999999999865
No 266
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=78.40 E-value=1.1 Score=45.23 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=23.2
Q ss_pred cCcccccccccCCCCCCHHHHHHHHHH
Q 045926 262 RCRAIKNCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 262 ~C~~Cg~C~~vCP~gI~~~~~I~~lR~ 288 (302)
.|..|+.|+++||+++.+.++-...+.
T Consensus 366 sCi~C~~C~d~CP~~Llp~ql~~~a~~ 392 (529)
T COG4656 366 SCIRCSLCADACPVNLLPQQLYWFAKG 392 (529)
T ss_pred ccccHHHHHHhCccccCHHHhhHHhhh
Confidence 899999999999999998886655554
No 267
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=78.05 E-value=0.82 Score=45.51 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=15.9
Q ss_pred ccccCcccccccccCCCC
Q 045926 259 KLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~g 276 (302)
....|+.||.|..+||+-
T Consensus 291 e~~~CIrCG~C~~~CPvy 308 (432)
T TIGR00273 291 EVLACIRCGACQNECPVY 308 (432)
T ss_pred hHhhCCCCCCccccCcch
Confidence 567999999999999964
No 268
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=77.23 E-value=1.6 Score=39.57 Aligned_cols=18 Identities=33% Similarity=0.829 Sum_probs=15.9
Q ss_pred ccccCcccccccccCCCC
Q 045926 259 KLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~g 276 (302)
.+..|+.||.|..+||..
T Consensus 139 ~~~~Ci~Cg~C~~~CP~~ 156 (232)
T PRK05950 139 GLYECILCACCSTSCPSF 156 (232)
T ss_pred hHHhccccccccccCCcc
Confidence 567999999999999964
No 269
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=77.08 E-value=0.9 Score=33.56 Aligned_cols=19 Identities=26% Similarity=0.693 Sum_probs=16.2
Q ss_pred ccccCcccCcccCCCCCcc
Q 045926 201 GLYECILCACCTTSCPSYW 219 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~ 219 (302)
+...||.||.|..+||..-
T Consensus 6 Drd~Cigcg~C~~~aPdvF 24 (68)
T COG1141 6 DRDTCIGCGACLAVAPDVF 24 (68)
T ss_pred chhhccccchhhhcCCcce
Confidence 4568999999999999764
No 270
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=77.05 E-value=0.52 Score=33.38 Aligned_cols=18 Identities=28% Similarity=0.713 Sum_probs=11.8
Q ss_pred cccCcccCcccCCCCCcc
Q 045926 202 LYECILCACCTTSCPSYW 219 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~ 219 (302)
..+||.||.|...+|..-
T Consensus 3 ~~~Ci~Cg~C~~~aP~vF 20 (58)
T PF13370_consen 3 RDKCIGCGLCVEIAPDVF 20 (58)
T ss_dssp TTT--S-SHHHHH-TTTE
T ss_pred hhhCcCCChHHHhCcHhe
Confidence 468999999999999764
No 271
>PRK06273 ferredoxin; Provisional
Probab=76.34 E-value=0.81 Score=39.57 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.3
Q ss_pred cccCcccccccccCCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~ 278 (302)
...|+.||.|..+||.++-
T Consensus 48 ~~~CigCg~C~~aCP~~AI 66 (165)
T PRK06273 48 EELCIGCGGCANVCPTKAI 66 (165)
T ss_pred chhCcChhHHHHhcCccce
Confidence 3489999999999998863
No 272
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=76.11 E-value=1.1 Score=41.46 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=16.2
Q ss_pred ccccCcccccccccCCCC
Q 045926 259 KLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~g 276 (302)
.++.|+.||.|..+||+-
T Consensus 140 ~~~~CI~CG~C~s~CPv~ 157 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVV 157 (251)
T ss_pred chhhcccCCcccCcCCcc
Confidence 678999999999999965
No 273
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=75.96 E-value=1.2 Score=41.00 Aligned_cols=18 Identities=33% Similarity=0.826 Sum_probs=16.5
Q ss_pred ccccCcccccccccCCCC
Q 045926 259 KLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~g 276 (302)
....|+.||.|+.+||+.
T Consensus 155 ~~~~CI~CG~C~saCP~~ 172 (250)
T PRK07570 155 DAAACIGCGACVAACPNG 172 (250)
T ss_pred CccccCCCcccccccCCc
Confidence 567999999999999996
No 274
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=75.93 E-value=1.7 Score=46.21 Aligned_cols=27 Identities=30% Similarity=0.660 Sum_probs=22.1
Q ss_pred ccccCcccccccccCCCCCCHHHHHHH
Q 045926 259 KLYRCRAIKNCTATCPKGLDPADAIHK 285 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~ 285 (302)
....|+.||.|..+||.++.+.+.+..
T Consensus 397 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~ 423 (784)
T TIGR00314 397 LANKCTQCGNCVRTCPNSLRVDEAMAH 423 (784)
T ss_pred hcccCCCcccchhhCCCCcchHHHHHH
Confidence 457999999999999999877665544
No 275
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=75.44 E-value=2 Score=42.98 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=25.7
Q ss_pred cccCcccc--cccccCCCCCCHHHHHHHHHH
Q 045926 260 LYRCRAIK--NCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 260 ~~~C~~Cg--~C~~vCP~gI~~~~~I~~lR~ 288 (302)
..+|..|+ .|+..||.++|+.+.|..++.
T Consensus 39 ~~~c~~c~~~~C~~~CP~~~~~~~~~~~~~~ 69 (467)
T TIGR01318 39 ADRCLYCGNPYCEWKCPVHNAIPQWLQLVQE 69 (467)
T ss_pred HHhcccCCCccccccCCCCCcHHHHHHHHHC
Confidence 46899999 699999999999999988773
No 276
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=75.34 E-value=0.99 Score=50.07 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=35.3
Q ss_pred cccccCcccCcccC--CCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccc-cCCCC
Q 045926 200 DGLYECILCACCTT--SCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTA-TCPKG 276 (302)
Q Consensus 200 ~~~~~CI~CG~C~~--aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~-vCP~g 276 (302)
-+...|..||.|.. .||.......+ + ++ + . .. ....|..|+.|.+ +||.-
T Consensus 626 In~~vCegCg~C~~~s~C~ai~~~~t~-~--------------gr----K---~----~I-d~s~Cn~~~~C~~G~CPsf 678 (1159)
T PRK13030 626 INEAVCEGCGDCGVQSNCLSVEPVETP-F--------------GR----K---R----RI-DQSSCNKDFSCVNGFCPSF 678 (1159)
T ss_pred EcccccCCchhhhhccCCcceeecccc-C--------------Cc----c---E----EE-CHHHCCCccccccCCCCCC
Confidence 35678999999985 79987532110 0 11 0 0 11 3458999999999 99976
Q ss_pred CCH
Q 045926 277 LDP 279 (302)
Q Consensus 277 I~~ 279 (302)
+-+
T Consensus 679 vtv 681 (1159)
T PRK13030 679 VTV 681 (1159)
T ss_pred eEe
Confidence 653
No 277
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=74.94 E-value=2.4 Score=38.85 Aligned_cols=20 Identities=25% Similarity=0.901 Sum_probs=16.8
Q ss_pred cccccCcccCcccCCCCCcc
Q 045926 200 DGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~ 219 (302)
.++..|+.||.|+.+||...
T Consensus 200 ~gl~~C~~C~~C~~vCP~~I 219 (244)
T PRK12385 200 NGVWSCTFVGYCSEVCPKHV 219 (244)
T ss_pred chhhhCcCcccccccCCCCC
Confidence 35679999999999999743
No 278
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=74.82 E-value=2.3 Score=34.29 Aligned_cols=81 Identities=20% Similarity=0.446 Sum_probs=33.8
Q ss_pred hccccccCccc--CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhccccc-c----cCccccccc
Q 045926 198 KLDGLYECILC--ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKL-Y----RCRAIKNCT 270 (302)
Q Consensus 198 ~~~~~~~CI~C--G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~-~----~C~~Cg~C~ 270 (302)
.......|+.| .-|+.+||... -+..++.+.+ .++.. +-+..+.+.. -+ . -|..=..|.
T Consensus 17 ~~~ea~rC~~c~~~pC~~aCP~~~-------dip~~i~~i~---~g~~~---~A~~~i~~~n-p~p~vcGrvCp~p~~Ce 82 (111)
T PF14691_consen 17 AIEEASRCLQCEDPPCQAACPAHI-------DIPEYIRLIR---EGNFK---EAYELIREDN-PFPAVCGRVCPHPKQCE 82 (111)
T ss_dssp HHHHHHHS---TT-HHHHTSTT----------HHHHHHHHH---CT-HH---HHHHHHHHH--TTHHHHHHH--GGGSGG
T ss_pred HHHHHhhccCCCCCCcccCCCCCC-------cHHHHHHHHH---CCCHH---HHHHHHHHhC-CCcccccCCCCCcchHH
Confidence 34456789999 79999999865 2233334332 22211 1122222111 11 1 122222399
Q ss_pred ccCCCCCCHHHHHHHHHHHHhh
Q 045926 271 ATCPKGLDPADAIHKMKTKHML 292 (302)
Q Consensus 271 ~vCP~gI~~~~~I~~lR~~l~~ 292 (302)
.+|-.+..-.=.|..|.+.+.+
T Consensus 83 ~~C~r~~~~pV~I~~l~r~~~d 104 (111)
T PF14691_consen 83 SACRRGKGEPVAIRALERFIAD 104 (111)
T ss_dssp GG-GGGST-S--HHHHHHHHHH
T ss_pred HHccCCCCCCCcHHHHHHHHHH
Confidence 9998863322356666666554
No 279
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=74.77 E-value=1.1 Score=35.23 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=18.1
Q ss_pred hhccccccCcccCcccCCCCCc
Q 045926 197 KKLDGLYECILCACCTTSCPSY 218 (302)
Q Consensus 197 ~~~~~~~~CI~CG~C~~aCP~~ 218 (302)
....+...||.||.|.-+||..
T Consensus 55 ~V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 55 SVRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred CEEEcCCCCCcchhhhhhcCCC
Confidence 3455778999999999999865
No 280
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=74.55 E-value=1.1 Score=34.82 Aligned_cols=19 Identities=26% Similarity=0.602 Sum_probs=16.6
Q ss_pred cccccCcccCcccCCCCCc
Q 045926 200 DGLYECILCACCTTSCPSY 218 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~ 218 (302)
.+.+.|-.||.|+.+||+-
T Consensus 63 idYdyCKGCGICa~vCP~k 81 (91)
T COG1144 63 IDYDYCKGCGICANVCPVK 81 (91)
T ss_pred eEcccccCceechhhCChh
Confidence 4678899999999999973
No 281
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=74.02 E-value=1.1 Score=33.02 Aligned_cols=18 Identities=39% Similarity=0.798 Sum_probs=16.0
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.|+.|..+||.++
T Consensus 24 ~~~C~~C~~C~~~Cp~~a 41 (78)
T TIGR02179 24 KEKCIKCKNCWLYCPEGA 41 (78)
T ss_pred CCcCcChhHHHhhcCccc
Confidence 468999999999999875
No 282
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=73.46 E-value=9.5 Score=32.61 Aligned_cols=52 Identities=19% Similarity=0.429 Sum_probs=32.2
Q ss_pred EEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECC
Q 045926 62 FRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGG 127 (302)
Q Consensus 62 ~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG 127 (302)
|+|+=-||+- ++..+.... |+|||||+...+.+.+. .|. .-.|-.|-|-|+-
T Consensus 44 i~Itfv~~dG-------~~~~i~g~v-GdtlLd~ah~n~idleG------ACEgslACSTCHViv~~ 96 (159)
T KOG3309|consen 44 IKITFVDPDG-------EEIKIKGKV-GDTLLDAAHENNLDLEG------ACEGSLACSTCHVIVDE 96 (159)
T ss_pred EEEEEECCCC-------CEEEeeeec-chHHHHHHHHcCCCccc------cccccccccceEEEEcH
Confidence 5555545543 234455555 99999999998754332 343 3467778887764
No 283
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=73.29 E-value=1.4 Score=41.37 Aligned_cols=17 Identities=29% Similarity=0.956 Sum_probs=15.5
Q ss_pred ccccCcccccccccCCC
Q 045926 259 KLYRCRAIKNCTATCPK 275 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~ 275 (302)
.+..|+.||.|..+||+
T Consensus 185 ~~~~CI~CG~C~saCPv 201 (276)
T PLN00129 185 GMYECILCACCSTSCPS 201 (276)
T ss_pred hhhhCccccccccccCC
Confidence 56799999999999995
No 284
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=73.24 E-value=1.4 Score=41.08 Aligned_cols=19 Identities=32% Similarity=0.774 Sum_probs=16.8
Q ss_pred cccCcccccccccCCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~ 278 (302)
...|+.||.|+.+||.++.
T Consensus 47 ~~~C~~C~~C~~~Cp~~a~ 65 (295)
T TIGR02494 47 ENRCLGCGKCVEVCPAGTA 65 (295)
T ss_pred cccCCCCchhhhhCccccc
Confidence 4589999999999999874
No 285
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=73.15 E-value=1 Score=47.51 Aligned_cols=27 Identities=30% Similarity=0.673 Sum_probs=20.2
Q ss_pred cccCcccCcccCCCCCcccCCCCcccH
Q 045926 202 LYECILCACCTTSCPSYWWNPEEYLGP 228 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP 228 (302)
.+.|+.||.|+.+||+.....-.++|-
T Consensus 191 ~SSCVsCG~CvtVCP~nALmek~m~g~ 217 (978)
T COG3383 191 ESSCVSCGACVTVCPVNALMEKSMLGE 217 (978)
T ss_pred cccccccCccceecchhhhhhhhhhcc
Confidence 568999999999999877544334433
No 286
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=72.92 E-value=2.4 Score=41.36 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=23.5
Q ss_pred ccccCcccccccccCCCC-------CCHHHHHHHHHHHHh
Q 045926 259 KLYRCRAIKNCTATCPKG-------LDPADAIHKMKTKHM 291 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~g-------I~~~~~I~~lR~~l~ 291 (302)
.+..|+.||.|..+||+- ..+...+..+|..+.
T Consensus 21 ~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~ 60 (407)
T PRK11274 21 ILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE 60 (407)
T ss_pred HHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhc
Confidence 456899999999999962 235556666666543
No 287
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=72.32 E-value=1.3 Score=34.79 Aligned_cols=19 Identities=16% Similarity=0.490 Sum_probs=16.5
Q ss_pred cccCcccccccccCCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~ 278 (302)
...|+.|+.|+.+||.++-
T Consensus 33 ~~~C~~C~~C~~~CP~~~i 51 (101)
T TIGR00402 33 SAVCTRCGECASACENNIL 51 (101)
T ss_pred cCcCcChhHHHHHcCcccc
Confidence 4589999999999998763
No 288
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=72.07 E-value=1.1 Score=37.25 Aligned_cols=18 Identities=28% Similarity=0.742 Sum_probs=15.3
Q ss_pred cccCcccCcccCCCCCcc
Q 045926 202 LYECILCACCTTSCPSYW 219 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~ 219 (302)
...|+.||.|+.+||...
T Consensus 88 ~~~C~~Cg~Cv~vCP~~a 105 (133)
T PRK09625 88 YSHCKGCGVCVEVCPTNP 105 (133)
T ss_pred cCcCcChhHHHHHCCcCc
Confidence 456999999999999753
No 289
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=71.24 E-value=1.5 Score=41.93 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=15.9
Q ss_pred ccccCcccccccccCCCC
Q 045926 259 KLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~g 276 (302)
....|+.||.|..+||+.
T Consensus 150 ~~~~Ci~CG~C~s~CP~~ 167 (329)
T PRK12577 150 QTGNCILCGACYSECNAR 167 (329)
T ss_pred HhhhCcccCcccccCCCC
Confidence 467899999999999965
No 290
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=70.99 E-value=2.5 Score=44.99 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=22.4
Q ss_pred ccccCcccccccccCCCCCCHHHHHHHH
Q 045926 259 KLYRCRAIKNCTATCPKGLDPADAIHKM 286 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~l 286 (302)
....|+.||.|+.+||.++.+...+...
T Consensus 402 eadrCI~CG~Cv~aCP~~l~i~~~I~~a 429 (781)
T PRK00941 402 LAKKCTECGWCVRVCPNELPIPEAMEAA 429 (781)
T ss_pred hhhhCcCCCCccccCCCCcchhHHHHHH
Confidence 3468999999999999998766665444
No 291
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=70.96 E-value=1.4 Score=48.81 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=35.3
Q ss_pred ccccccCcccCcccC--CCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccc-cCCC
Q 045926 199 LDGLYECILCACCTT--SCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTA-TCPK 275 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~--aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~-vCP~ 275 (302)
+-+...|..||.|.. .||.......+ + ++ + + .. ....|..|+.|.. .||.
T Consensus 639 ~In~~vCegCgdC~~~s~C~ai~p~~t~-~--------------gr----K-~------~I-dqs~Cn~d~sC~~G~CPs 691 (1165)
T PRK09193 639 FINEAVCEGCGDCSVKSNCLSVEPVETE-F--------------GR----K-R------RI-DQSSCNKDFSCLKGFCPS 691 (1165)
T ss_pred EEcccccCCchhhhhccCCcceeecccc-C--------------Cc----c-E------EE-CHhHCCCccccccCCCCC
Confidence 335678999999985 79987532111 0 11 0 0 11 3458999999999 9998
Q ss_pred CCC
Q 045926 276 GLD 278 (302)
Q Consensus 276 gI~ 278 (302)
-+-
T Consensus 692 Fvt 694 (1165)
T PRK09193 692 FVT 694 (1165)
T ss_pred cee
Confidence 764
No 292
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=70.89 E-value=1.5 Score=42.26 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=19.7
Q ss_pred hhccccccCcccCcccCCCCCccc
Q 045926 197 KKLDGLYECILCACCTTSCPSYWW 220 (302)
Q Consensus 197 ~~~~~~~~CI~CG~C~~aCP~~~~ 220 (302)
....+..+|+.||.|..+||...+
T Consensus 208 ~~~id~~~Ci~Cg~Ci~~CP~~a~ 231 (341)
T TIGR02066 208 SLEVDVEKCIYCGNCYTMCPAMPI 231 (341)
T ss_pred ceeeccccCCcCCchHHhCchhhc
Confidence 345677899999999999998543
No 293
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=70.89 E-value=1.4 Score=48.81 Aligned_cols=53 Identities=19% Similarity=0.365 Sum_probs=34.8
Q ss_pred ccccccCcccCcccC--CCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccc-cCCC
Q 045926 199 LDGLYECILCACCTT--SCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTA-TCPK 275 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~--aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~-vCP~ 275 (302)
+-+...|..||-|.. .||.......+ + ++ + . .. ....|..|+.|.. .||.
T Consensus 653 ~In~~vCeGCgdC~~~snC~ai~p~et~-~--------------gr----K---~----~I-dqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 653 FINELVCEGCGDCSVQSNCLAVQPVETE-F--------------GR----K---R----KI-NQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred EEcccccCCchhhhhccCCceeeecccc-C--------------Cc----c---E----EE-CHhHCCCccccccCCCCC
Confidence 345678999999985 79987632111 1 11 0 0 11 3458999999999 9998
Q ss_pred CCC
Q 045926 276 GLD 278 (302)
Q Consensus 276 gI~ 278 (302)
-+-
T Consensus 706 Fvt 708 (1186)
T PRK13029 706 FVT 708 (1186)
T ss_pred cee
Confidence 443
No 294
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=70.35 E-value=1.6 Score=39.96 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=15.9
Q ss_pred ccccCcccccccccCCCC
Q 045926 259 KLYRCRAIKNCTATCPKG 276 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~g 276 (302)
.+..|+.||.|..+||+-
T Consensus 147 ~~~~CI~Cg~C~saCP~~ 164 (239)
T PRK13552 147 ELDRCIECGCCVAACGTK 164 (239)
T ss_pred chhhccccchhHhhCCCC
Confidence 577999999999999954
No 295
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=69.84 E-value=1.7 Score=34.56 Aligned_cols=19 Identities=26% Similarity=0.670 Sum_probs=15.6
Q ss_pred ccccCcccCcccCCCCCcc
Q 045926 201 GLYECILCACCTTSCPSYW 219 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~ 219 (302)
+...|+.||.|+.+||...
T Consensus 79 d~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09624 79 DYDYCKGCGICANECPTKA 97 (105)
T ss_pred CchhCCCcCchhhhcCcCc
Confidence 3457999999999999643
No 296
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=69.68 E-value=14 Score=26.22 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=30.2
Q ss_pred EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEec---cccccccCCCCCceEE
Q 045926 83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTV---ACLKPIDGDTSKPTII 147 (302)
Q Consensus 83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~l---aC~t~v~~~~~~~~~I 147 (302)
+++++ ++||.|+|..++. .| ..++|.+||+.+. --.+.+.+ ++.+.|
T Consensus 8 ~~~~~-~~tv~~ll~~l~~--~~-------------~~v~v~vN~~iv~~~~~~~~~L~~--gD~vei 57 (64)
T TIGR01683 8 VEVED-GLTLAALLESLGL--DP-------------RRVAVAVNGEIVPRSEWDDTILKE--GDRIEI 57 (64)
T ss_pred EEcCC-CCcHHHHHHHcCC--CC-------------CeEEEEECCEEcCHHHcCceecCC--CCEEEE
Confidence 44445 7999999998863 22 2379999998663 34455655 344443
No 297
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=69.37 E-value=2.9 Score=41.91 Aligned_cols=85 Identities=20% Similarity=0.377 Sum_probs=46.0
Q ss_pred hhccccccCcccC-cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhccccc-----ccCccccccc
Q 045926 197 KKLDGLYECILCA-CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKL-----YRCRAIKNCT 270 (302)
Q Consensus 197 ~~~~~~~~CI~CG-~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~-----~~C~~Cg~C~ 270 (302)
........|+.|+ .|...||+....+ .|..++. .+.+. +.++.+...+ .+ =-|..=..|.
T Consensus 17 ~a~~~a~rCl~C~~~C~~~cp~~~~IP----~~~~lv~------~g~~~---~a~~~i~~tn-~~p~~~gRvcp~~~~ce 82 (457)
T COG0493 17 AAIYEAARCLDCGDPCITGCPVHNDIP----EPIGLVR------EGVDH---EAIKLIHKTN-NLPAITGRVCPLGNLCE 82 (457)
T ss_pred HHHHHHHHHHcCCCccccCCcCCCcCC----CHHHHHh------cCCcH---HHHHHHHHhC-CCccccCccCCCCCcee
Confidence 4456678999999 6999999976432 2322222 22321 2233332211 11 1244444577
Q ss_pred ccCCCCC-CHHHHHHHHHHHHhhcCC
Q 045926 271 ATCPKGL-DPADAIHKMKTKHMLSQP 295 (302)
Q Consensus 271 ~vCP~gI-~~~~~I~~lR~~l~~~~~ 295 (302)
..|..++ +....|..|-+.+.+.+.
T Consensus 83 g~cv~~~~~~~v~i~~le~~i~d~~~ 108 (457)
T COG0493 83 GACVLGIEELPVNIGALERAIGDKAD 108 (457)
T ss_pred eeeeeccCCCchhhhhHHHHHhhHHH
Confidence 7777774 455567777666555443
No 298
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=67.51 E-value=18 Score=27.65 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=32.0
Q ss_pred cceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEe
Q 045926 56 KKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNT 130 (302)
Q Consensus 56 ~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~ 130 (302)
.+.+++|.|+. +.|+++ + +.||.++|..++. .+ ...+|++||..+
T Consensus 15 ~~~~m~I~VNG------------~~~~~~--~-~~tl~~LL~~l~~--~~-------------~~vAVevNg~iV 59 (84)
T PRK06083 15 AMVLITISIND------------QSIQVD--I-SSSLAQIIAQLSL--PE-------------LGCVFAINNQVV 59 (84)
T ss_pred CCceEEEEECC------------eEEEcC--C-CCcHHHHHHHcCC--CC-------------ceEEEEECCEEe
Confidence 44578899998 556664 4 7899999988752 21 126999999754
No 299
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=66.94 E-value=2.7 Score=39.07 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=17.0
Q ss_pred ccccCcccccccccCCCCCC
Q 045926 259 KLYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI~ 278 (302)
....|+.|+.|..+||.++.
T Consensus 206 d~~~C~~C~~C~~~CP~~~i 225 (271)
T PRK09477 206 DRQKCTRCMDCFHVCPEPQV 225 (271)
T ss_pred CcccCcccCCcCCcCCCcce
Confidence 34589999999999998864
No 300
>PRK06991 ferredoxin; Provisional
Probab=66.94 E-value=1.9 Score=40.32 Aligned_cols=18 Identities=22% Similarity=0.491 Sum_probs=15.9
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|+.+||+++
T Consensus 84 ~~~CigCg~Cv~aCP~~A 101 (270)
T PRK06991 84 EQLCIGCTLCMQACPVDA 101 (270)
T ss_pred cccCCCCcHHHHhCCHhh
Confidence 368999999999999776
No 301
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=66.70 E-value=3.7 Score=40.96 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.8
Q ss_pred cccCccccc--ccccCCCCCCHHHHHHHHHH
Q 045926 260 LYRCRAIKN--CTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 260 ~~~C~~Cg~--C~~vCP~gI~~~~~I~~lR~ 288 (302)
..+|..|+. |+..||.++++.+.|..+++
T Consensus 43 a~rc~~c~~~~C~~~CP~~~~~~~~~~~~~~ 73 (471)
T PRK12810 43 AARCMDCGIPFCHWGCPVHNYIPEWNDLVYR 73 (471)
T ss_pred HHhccCCCCCcccccCCCCCcHHHHHHHHHC
Confidence 457888876 99999999999999988874
No 302
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=66.37 E-value=2.7 Score=41.66 Aligned_cols=22 Identities=41% Similarity=0.822 Sum_probs=18.5
Q ss_pred hccccccCcccCcccCCCCCcc
Q 045926 198 KLDGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~ 219 (302)
..+.++.|.+||.|..+||+-.
T Consensus 353 ~~~~~~~c~lcg~C~evCPv~I 374 (459)
T COG1139 353 AGDLPYACSLCGACTEVCPVKI 374 (459)
T ss_pred ccccchhhccccCCCCcCCCCC
Confidence 3456789999999999999865
No 303
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=65.96 E-value=8.6 Score=38.40 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=18.4
Q ss_pred hhccccccCcccC--cccCCCCCcc
Q 045926 197 KKLDGLYECILCA--CCTTSCPSYW 219 (302)
Q Consensus 197 ~~~~~~~~CI~CG--~C~~aCP~~~ 219 (302)
.......+|+.|+ .|..+||...
T Consensus 34 ~~~~~~~~c~~c~~~~C~~~CP~~~ 58 (467)
T TIGR01318 34 QAQYQADRCLYCGNPYCEWKCPVHN 58 (467)
T ss_pred HHHHHHHhcccCCCccccccCCCCC
Confidence 3445678999998 6999999865
No 304
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=65.52 E-value=2.3 Score=36.53 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=15.9
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|..+||.++
T Consensus 112 ~~~Ci~Cg~C~~aCp~~a 129 (165)
T TIGR01944 112 EDNCIGCTKCIQACPVDA 129 (165)
T ss_pred CCcCCChhHHHHhCCccc
Confidence 468999999999999775
No 305
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=64.82 E-value=2.1 Score=41.07 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=14.9
Q ss_pred ccccCcccCcccCCCCC
Q 045926 201 GLYECILCACCTTSCPS 217 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~ 217 (302)
+...|..||.|.+.||.
T Consensus 3 ~~~~c~~Cg~C~a~cp~ 19 (332)
T COG1035 3 DAGLCTGCGTCAAVCPY 19 (332)
T ss_pred cCcccccchhhHhhCCc
Confidence 34579999999999997
No 306
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=64.79 E-value=2.4 Score=30.38 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=14.1
Q ss_pred cccCcccccccccCCC
Q 045926 260 LYRCRAIKNCTATCPK 275 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~ 275 (302)
...|+.||.|+..||.
T Consensus 5 ~~~C~gcg~C~~~aP~ 20 (65)
T PF13459_consen 5 RDRCIGCGLCVELAPE 20 (65)
T ss_pred cccCcCccHHHhhCCc
Confidence 3589999999999994
No 307
>PRK12831 putative oxidoreductase; Provisional
Probab=64.68 E-value=4.5 Score=40.37 Aligned_cols=29 Identities=31% Similarity=0.630 Sum_probs=25.4
Q ss_pred cccCcccc--cccccCCCCCCHHHHHHHHHH
Q 045926 260 LYRCRAIK--NCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 260 ~~~C~~Cg--~C~~vCP~gI~~~~~I~~lR~ 288 (302)
..+|..|+ -|...||.++++.+.|..++.
T Consensus 39 a~rc~~c~~~~C~~~CP~~~~i~~~~~~~~~ 69 (464)
T PRK12831 39 ASRCLQCKKPKCVKGCPVSINIPGFISKLKE 69 (464)
T ss_pred HHhhcCCCCCchhhhCCCCCCHHHHHHHHHC
Confidence 45899998 599999999999999988773
No 308
>PRK07440 hypothetical protein; Provisional
Probab=64.63 E-value=21 Score=26.13 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=33.6
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEec---cccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTV---ACLK 135 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~l---aC~t 135 (302)
+++++|+. +.+++ .+ ++||.+.|.+++. .+ ...+|.+||..+. --.+
T Consensus 4 ~m~i~vNG------------~~~~~--~~-~~tl~~lL~~l~~--~~-------------~~vav~~N~~iv~r~~w~~~ 53 (70)
T PRK07440 4 PITLQVNG------------ETRTC--SS-GTSLPDLLQQLGF--NP-------------RLVAVEYNGEILHRQFWEQT 53 (70)
T ss_pred ceEEEECC------------EEEEc--CC-CCCHHHHHHHcCC--CC-------------CeEEEEECCEEeCHHHcCce
Confidence 57788888 44554 45 7999999998763 21 1269999997553 2334
Q ss_pred cccC
Q 045926 136 PIDG 139 (302)
Q Consensus 136 ~v~~ 139 (302)
.+.+
T Consensus 54 ~L~~ 57 (70)
T PRK07440 54 QVQP 57 (70)
T ss_pred ecCC
Confidence 4544
No 309
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=64.12 E-value=2.4 Score=40.21 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=18.0
Q ss_pred hccccccCcccCcccCCCCCcc
Q 045926 198 KLDGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~~~ 219 (302)
...+...|+.||.|+.+||+..
T Consensus 196 ~~id~~~C~~Cg~Cv~~CP~~A 217 (314)
T TIGR02912 196 VVRDHSKCIGCGECVLKCPTGA 217 (314)
T ss_pred EEeCCCcCcCcchhhhhCCHhh
Confidence 3446679999999999999754
No 310
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=63.99 E-value=2.5 Score=31.19 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=15.3
Q ss_pred ccCcccccccccCCCCCC
Q 045926 261 YRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 261 ~~C~~Cg~C~~vCP~gI~ 278 (302)
+.|+.||.|..+||--.+
T Consensus 8 d~Cigcg~C~~~aPdvF~ 25 (68)
T COG1141 8 DTCIGCGACLAVAPDVFD 25 (68)
T ss_pred hhccccchhhhcCCccee
Confidence 689999999999995444
No 311
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=63.93 E-value=19 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=23.4
Q ss_pred eEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEe
Q 045926 79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNT 130 (302)
Q Consensus 79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~ 130 (302)
+++++ .+ +.||.++|..++.. + . .++|.|||..+
T Consensus 8 ~~~~~--~~-~~tl~~ll~~l~~~--~----~---------~vaVavN~~iv 41 (66)
T PRK08053 8 QPMQC--AA-GQTVHELLEQLNQL--Q----P---------GAALAINQQII 41 (66)
T ss_pred eEEEc--CC-CCCHHHHHHHcCCC--C----C---------cEEEEECCEEe
Confidence 44555 45 78999999887631 1 1 27999999855
No 312
>PRK06437 hypothetical protein; Provisional
Probab=63.84 E-value=22 Score=25.77 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=23.9
Q ss_pred EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEec
Q 045926 83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTV 131 (302)
Q Consensus 83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~l 131 (302)
+++++ +.|+.|+|.+++. .+ . ..+|.+||..+.
T Consensus 15 ~~i~~-~~tv~dLL~~Lgi--~~----~---------~vaV~vNg~iv~ 47 (67)
T PRK06437 15 IEIDH-ELTVNDIIKDLGL--DE----E---------EYVVIVNGSPVL 47 (67)
T ss_pred EEcCC-CCcHHHHHHHcCC--CC----c---------cEEEEECCEECC
Confidence 44456 7999999999873 11 1 268999998775
No 313
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=63.74 E-value=3 Score=40.01 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.0
Q ss_pred ccccCcccCcccCCCCCcc
Q 045926 201 GLYECILCACCTTSCPSYW 219 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~ 219 (302)
+...|+.||.|..+||...
T Consensus 51 d~~~C~~Cg~C~~vCP~~~ 69 (341)
T PRK09326 51 APNVCEGCLTCSRICPVVD 69 (341)
T ss_pred CcCcCcCcCchhhhCCCCc
Confidence 4467999999999999743
No 314
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=63.56 E-value=2.4 Score=33.59 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.1
Q ss_pred ccccCcccccccccCCCCC
Q 045926 259 KLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI 277 (302)
....|+.|+.|+.+||.++
T Consensus 49 ~~~~Ci~C~~C~~~CP~~a 67 (105)
T PRK09623 49 DESKCVKCYICWKFCPEPA 67 (105)
T ss_pred CcccCccccchhhhCCHhh
Confidence 3458999999999999764
No 315
>PRK08764 ferredoxin; Provisional
Probab=63.14 E-value=2.6 Score=35.05 Aligned_cols=17 Identities=24% Similarity=0.677 Sum_probs=15.2
Q ss_pred ccCcccccccccCCCCC
Q 045926 261 YRCRAIKNCTATCPKGL 277 (302)
Q Consensus 261 ~~C~~Cg~C~~vCP~gI 277 (302)
+.|+.|+.|+.+||.++
T Consensus 85 ~~Ci~C~~Cv~aCp~~a 101 (135)
T PRK08764 85 ADCIGCTKCIQACPVDA 101 (135)
T ss_pred ccCcCcchHHHhCChhh
Confidence 58999999999999764
No 316
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=62.56 E-value=5.5 Score=39.52 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=25.5
Q ss_pred cccCcccc----cccccCCCCCCHHHHHHHHHH
Q 045926 260 LYRCRAIK----NCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 260 ~~~C~~Cg----~C~~vCP~gI~~~~~I~~lR~ 288 (302)
..+|..|. -|...||.++++.+.|..++.
T Consensus 25 a~rc~~c~~~~~~C~~~CP~~~~i~~~~~~~~~ 57 (449)
T TIGR01316 25 AQRCLNCKDATKPCIKGCPVHVPIPEFIAKIQE 57 (449)
T ss_pred HhhCcCccCCCCChhhhCCCCCCHHHHHHHHHC
Confidence 46899998 799999999999999988773
No 317
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=62.51 E-value=2.5 Score=43.72 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=19.1
Q ss_pred HhhccccccCcccCcccCCCCCcc
Q 045926 196 RKKLDGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 196 ~~~~~~~~~CI~CG~C~~aCP~~~ 219 (302)
.+...+...|+.||.|+.+||+..
T Consensus 601 ~k~~id~~~C~GCg~C~~iCP~~a 624 (640)
T COG4231 601 KKARIDPSSCNGCGSCVEVCPSFA 624 (640)
T ss_pred CceeecccccccchhhhhcCchhh
Confidence 344556677999999999999865
No 318
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=62.43 E-value=2.7 Score=37.08 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=15.5
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|+.+||.++
T Consensus 113 ~~~Ci~Cg~Cv~aCp~~a 130 (191)
T PRK05113 113 EDNCIGCTKCIQACPVDA 130 (191)
T ss_pred CCcCCCCChhhhhCCHhh
Confidence 458999999999999664
No 319
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=62.36 E-value=2.5 Score=39.72 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=16.6
Q ss_pred cccCcccccccccCCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~ 278 (302)
...|..|+.|.++||+++-
T Consensus 158 ~~~C~~C~~C~~aCPt~AI 176 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQAL 176 (282)
T ss_pred CCCCccHHHHHHhcCcccc
Confidence 3589999999999999873
No 320
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=62.04 E-value=17 Score=25.84 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=29.1
Q ss_pred EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecc---ccccccCCCCCceEE
Q 045926 83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVA---CLKPIDGDTSKPTII 147 (302)
Q Consensus 83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~la---C~t~v~~~~~~~~~I 147 (302)
+++++ ++||.++|.+++.. + ..++|.|||+.+-- ..+.+.+ ++.+.|
T Consensus 9 ~~~~~-~~tv~~ll~~l~~~--~-------------~~i~V~vNg~~v~~~~~~~~~L~~--gD~V~i 58 (65)
T cd00565 9 REVEE-GATLAELLEELGLD--P-------------RGVAVALNGEIVPRSEWASTPLQD--GDRIEI 58 (65)
T ss_pred EEcCC-CCCHHHHHHHcCCC--C-------------CcEEEEECCEEcCHHHcCceecCC--CCEEEE
Confidence 33445 78999999988631 1 13789999986532 3355655 344443
No 321
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=61.73 E-value=3 Score=39.38 Aligned_cols=18 Identities=22% Similarity=0.613 Sum_probs=15.8
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.|+.|..+||.+.
T Consensus 246 ~~~Ci~C~~C~~~CP~~a 263 (312)
T PRK14028 246 HSKCIMCRKCWLYCPDDA 263 (312)
T ss_pred cccCcCcccccccCChhh
Confidence 458999999999999765
No 322
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=61.41 E-value=23 Score=26.03 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=24.0
Q ss_pred EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEec
Q 045926 83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTV 131 (302)
Q Consensus 83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~l 131 (302)
++..+ ++|+.|.|.+++.. . ...+|.+||..+.
T Consensus 12 ~e~~~-~~tv~dLL~~l~~~-~--------------~~vav~vNg~iVp 44 (68)
T COG2104 12 VEIAE-GTTVADLLAQLGLN-P--------------EGVAVAVNGEIVP 44 (68)
T ss_pred EEcCC-CCcHHHHHHHhCCC-C--------------ceEEEEECCEEcc
Confidence 44555 69999999998732 1 1379999998664
No 323
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=61.07 E-value=9.7 Score=37.98 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=17.8
Q ss_pred hhccccccCcccCc--ccCCCCCcc
Q 045926 197 KKLDGLYECILCAC--CTTSCPSYW 219 (302)
Q Consensus 197 ~~~~~~~~CI~CG~--C~~aCP~~~ 219 (302)
.......+|+.|+. |+.+||...
T Consensus 38 ~~~~~a~rc~~c~~~~C~~~CP~~~ 62 (471)
T PRK12810 38 QAKIQAARCMDCGIPFCHWGCPVHN 62 (471)
T ss_pred HHHHHHHhccCCCCCcccccCCCCC
Confidence 34455678999976 999999865
No 324
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=60.82 E-value=7.3 Score=37.73 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=17.1
Q ss_pred cccccCcccCcccCCCCCcc
Q 045926 200 DGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~ 219 (302)
..+..|+.||+|..+||...
T Consensus 51 ~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 51 ESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred CCCCcCcCcCccCcccCCCC
Confidence 44678999999999999864
No 325
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=60.72 E-value=3 Score=39.75 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=16.2
Q ss_pred ccCcccccccccCCCCCC
Q 045926 261 YRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 261 ~~C~~Cg~C~~vCP~gI~ 278 (302)
..|..|+.|.++||.++-
T Consensus 205 ~fC~~C~~C~~~CP~~Ai 222 (314)
T TIGR02486 205 KFCETCGKCADECPSGAI 222 (314)
T ss_pred ccCcchhHHHhhCCcccc
Confidence 479999999999999874
No 326
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=60.23 E-value=5.2 Score=39.61 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=25.0
Q ss_pred cccCccc--ccccccCCCCCCHHHHHHHHHH
Q 045926 260 LYRCRAI--KNCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 260 ~~~C~~C--g~C~~vCP~gI~~~~~I~~lR~ 288 (302)
..+|..| ..|+..||.++|+.+.|..+++
T Consensus 39 ~~rc~~c~~~~c~~~cp~~~~~~~~~~~~~~ 69 (457)
T PRK11749 39 ASRCLQCKDAPCVKACPVSIDIPEFIRLIAE 69 (457)
T ss_pred HHHhhCCCCCcccccCCCcCCHHHHHHHHHC
Confidence 4578888 7899999999999999988764
No 327
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=60.12 E-value=2.6 Score=41.28 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=15.0
Q ss_pred cCcccccccccCCCCCC
Q 045926 262 RCRAIKNCTATCPKGLD 278 (302)
Q Consensus 262 ~C~~Cg~C~~vCP~gI~ 278 (302)
.|+.|+.|.++||....
T Consensus 246 ~CI~C~~CidaCd~~~~ 262 (386)
T COG0348 246 ECIGCGRCIDACDDDML 262 (386)
T ss_pred ccccHhhHhhhCCHHhh
Confidence 69999999999997655
No 328
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=59.64 E-value=13 Score=36.80 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=43.5
Q ss_pred hccccccCcccC----cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhh--ccc--ccccCcccccc
Q 045926 198 KLDGLYECILCA----CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTE--DER--KLYRCRAIKNC 269 (302)
Q Consensus 198 ~~~~~~~CI~CG----~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~--~~~--~~~~C~~Cg~C 269 (302)
.+.+..+|+.|. .|..+||...- -| .++.+. .+++-. +-++.+.. .+- --.-|.+...|
T Consensus 21 ~~~ea~rc~~c~~~~~~C~~~CP~~~~------i~-~~~~~~---~~g~~~---~A~~~~~~~~p~p~~~grvC~~~~~C 87 (449)
T TIGR01316 21 ALVEAQRCLNCKDATKPCIKGCPVHVP------IP-EFIAKI---QEGDFK---GAVDIIKTTSLLPAICGRVCPQERQC 87 (449)
T ss_pred HHHHHhhCcCccCCCCChhhhCCCCCC------HH-HHHHHH---HCCCHH---HHHHHHHHhCChhHHhccCCCCccch
Confidence 445568899998 79999998652 12 223322 222211 11111111 110 01357776789
Q ss_pred cccCCCCC-----CHHHHHHHHHHHHh
Q 045926 270 TATCPKGL-----DPADAIHKMKTKHM 291 (302)
Q Consensus 270 ~~vCP~gI-----~~~~~I~~lR~~l~ 291 (302)
..+|..+. +-.-.|..|.+...
T Consensus 88 e~~C~~~~~~~~~~~~v~i~~l~~~~~ 114 (449)
T TIGR01316 88 EGQCTVGKMFKDVGKPVSIGALERFVA 114 (449)
T ss_pred HhhCcCCCcCCCCCCCccHHHHHHHHH
Confidence 99998654 33345666666554
No 329
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=58.47 E-value=4 Score=33.97 Aligned_cols=19 Identities=32% Similarity=0.732 Sum_probs=16.3
Q ss_pred cccCcccc-----cccccCCCCCC
Q 045926 260 LYRCRAIK-----NCTATCPKGLD 278 (302)
Q Consensus 260 ~~~C~~Cg-----~C~~vCP~gI~ 278 (302)
...|+.|| .|+.+||.++-
T Consensus 7 ~~~C~gC~~~~~~~Cv~~CP~~ai 30 (132)
T TIGR02060 7 PTKCDGCKAGEKTACVYICPNDLM 30 (132)
T ss_pred cccccCccCCchhcCHhhcCccce
Confidence 35799999 99999998763
No 330
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=57.82 E-value=4.3 Score=40.69 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=16.7
Q ss_pred ccccCcccccccccCCCCC
Q 045926 259 KLYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 259 ~~~~C~~Cg~C~~vCP~gI 277 (302)
.+..|+.||.|..+||+-.
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~ 149 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARK 149 (486)
T ss_pred CchhcccCccccccCCCCc
Confidence 5679999999999999764
No 331
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=57.70 E-value=6.6 Score=28.47 Aligned_cols=11 Identities=18% Similarity=0.833 Sum_probs=10.2
Q ss_pred EEEEEecCCCC
Q 045926 61 EFRIYRWNPDR 71 (302)
Q Consensus 61 ~~~I~r~~p~~ 71 (302)
+|+||||||++
T Consensus 40 ~iKIfkyd~~t 50 (63)
T PF14157_consen 40 QIKIFKYDEDT 50 (63)
T ss_dssp EEEEEEEETTT
T ss_pred eEEEEEeCCCC
Confidence 68999999998
No 332
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=57.18 E-value=4 Score=37.03 Aligned_cols=17 Identities=29% Similarity=0.884 Sum_probs=15.3
Q ss_pred ccCcccccccccCCCCC
Q 045926 261 YRCRAIKNCTATCPKGL 277 (302)
Q Consensus 261 ~~C~~Cg~C~~vCP~gI 277 (302)
..|+.|+.|..+||.++
T Consensus 148 ~~C~~C~~C~~~CP~~a 164 (234)
T TIGR02700 148 KRCKGCGICVDACPRSA 164 (234)
T ss_pred hHCcCcchHHHhCCccc
Confidence 47999999999999875
No 333
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=56.93 E-value=3.2 Score=39.48 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=17.1
Q ss_pred hccccccCcccCcccCCCCC
Q 045926 198 KLDGLYECILCACCTTSCPS 217 (302)
Q Consensus 198 ~~~~~~~CI~CG~C~~aCP~ 217 (302)
...+.++||.||.|..+||.
T Consensus 196 l~id~~~Ci~Cg~Ci~~Cp~ 215 (317)
T COG2221 196 LKIDGSKCIGCGKCIRACPK 215 (317)
T ss_pred EEEehhhccCccHHhhhCCh
Confidence 45567899999999999994
No 334
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=56.48 E-value=28 Score=26.46 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=37.5
Q ss_pred eEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccCCCCCceEEccCC
Q 045926 79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLP 151 (302)
Q Consensus 79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~~~~~Iepl~ 151 (302)
..+.++..+ +.||-|++..+|. |.=-. =.|.|||+.+-- ...+.+ |+.+.|.|..
T Consensus 23 ~~~~~~~~~-~~tvkd~IEsLGV---P~tEV-----------~~i~vNG~~v~~-~~~~~~--Gd~v~V~P~~ 77 (81)
T PF14451_consen 23 GPFTHPFDG-GATVKDVIESLGV---PHTEV-----------GLILVNGRPVDF-DYRLKD--GDRVAVYPVF 77 (81)
T ss_pred CceEEecCC-CCcHHHHHHHcCC---ChHHe-----------EEEEECCEECCC-cccCCC--CCEEEEEecc
Confidence 467778877 8999999999983 32222 268999986632 244444 5677887753
No 335
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=55.09 E-value=7.1 Score=41.44 Aligned_cols=29 Identities=31% Similarity=0.676 Sum_probs=25.1
Q ss_pred cccCcccc--cccccCCCCCCHHHHHHHHHH
Q 045926 260 LYRCRAIK--NCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 260 ~~~C~~Cg--~C~~vCP~gI~~~~~I~~lR~ 288 (302)
..+|..|+ .|+..||.++++.+.|..+++
T Consensus 328 a~rC~~c~~~~C~~~Cp~~~~i~~~~~~~~~ 358 (752)
T PRK12778 328 AKRCLDCKNPGCVEGCPVGIDIPRFIKNIER 358 (752)
T ss_pred HHHhhcCCCCcccccCcCCCCHHHHHHHHHC
Confidence 35899998 599999999999999988764
No 336
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=55.08 E-value=5.5 Score=36.22 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=23.8
Q ss_pred HHHHHHHcccc---cCCCcccccCCCCCccCccEEEECCEEecccc
Q 045926 92 VLDALQKIKAE---TDSSLSYRRSCREGICGSCAMNIGGTNTVACL 134 (302)
Q Consensus 92 vLdal~~i~~~---~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~ 134 (302)
+.++|...|.. ..-.+.-+--|..|+||+|.|. ..++|.
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~----~~~~~~ 246 (253)
T cd06221 205 VAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG----PKYVCK 246 (253)
T ss_pred HHHHHHHcCCCHHHEEEehhhccccCCccccCcccC----CeeEEC
Confidence 55566555421 1222333345999999999998 356665
No 337
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=54.86 E-value=4.7 Score=40.62 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.5
Q ss_pred cccCcccccccccCCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~ 278 (302)
...|+.||-|+..||.++-
T Consensus 49 E~lCiGCGICvkkCPF~AI 67 (591)
T COG1245 49 EELCIGCGICVKKCPFDAI 67 (591)
T ss_pred hhhhccchhhhccCCcceE
Confidence 4579999999999998864
No 338
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=53.27 E-value=8.8 Score=42.30 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.7
Q ss_pred ccCcccc--cccccCCCCCCHHHHHHHHHH
Q 045926 261 YRCRAIK--NCTATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 261 ~~C~~Cg--~C~~vCP~gI~~~~~I~~lR~ 288 (302)
.+|..|+ .|...||.++++.+.|..++.
T Consensus 331 ~rC~~c~~~~C~~~CP~~~dip~~~~~i~~ 360 (1006)
T PRK12775 331 ERCIQCAKPTCIAGCPVQIDIPVFIRHVVV 360 (1006)
T ss_pred HhccCCCCccccCCCCCCCCHHHHHHHHHC
Confidence 4899997 799999999999999988763
No 339
>PRK12831 putative oxidoreductase; Provisional
Probab=52.37 E-value=17 Score=36.34 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=18.8
Q ss_pred hhccccccCcccC--cccCCCCCcc
Q 045926 197 KKLDGLYECILCA--CCTTSCPSYW 219 (302)
Q Consensus 197 ~~~~~~~~CI~CG--~C~~aCP~~~ 219 (302)
....+..+|+.|+ .|..+||...
T Consensus 34 ~~~~ea~rc~~c~~~~C~~~CP~~~ 58 (464)
T PRK12831 34 EAVKEASRCLQCKKPKCVKGCPVSI 58 (464)
T ss_pred HHHHHHHhhcCCCCCchhhhCCCCC
Confidence 4456778999998 6999999865
No 340
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=52.17 E-value=11 Score=36.56 Aligned_cols=19 Identities=37% Similarity=0.787 Sum_probs=16.8
Q ss_pred ccccCcccCcccCCCCCcc
Q 045926 201 GLYECILCACCTTSCPSYW 219 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~ 219 (302)
.++.|..||.|..+||+..
T Consensus 50 ~~~~C~~C~~C~~~CP~~i 68 (397)
T TIGR03379 50 ALKYCTNCKRCEVACPSDV 68 (397)
T ss_pred ccccCcCcCccchhcCCCC
Confidence 4778999999999999865
No 341
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=52.02 E-value=4.2 Score=39.94 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=16.5
Q ss_pred cccccCcccCcccCCCCCcc
Q 045926 200 DGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~ 219 (302)
.+...|+.||.|+.+||...
T Consensus 327 Id~~~Ci~CGaCV~aCP~~A 346 (391)
T TIGR03287 327 LNTEDCFGCGYCAEICPGGA 346 (391)
T ss_pred eChHhCcChHHHHhhCCccc
Confidence 34578999999999999743
No 342
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=51.75 E-value=6 Score=44.26 Aligned_cols=19 Identities=26% Similarity=0.728 Sum_probs=16.5
Q ss_pred cccccCcccCcccCCCCCc
Q 045926 200 DGLYECILCACCTTSCPSY 218 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~ 218 (302)
.+...|+.||.|+.+||..
T Consensus 736 i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 736 ISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred eccccCcCccchhhhcCCC
Confidence 3567899999999999984
No 343
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=51.08 E-value=5.5 Score=38.72 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=16.2
Q ss_pred ccccCcccCcccCCCCCcc
Q 045926 201 GLYECILCACCTTSCPSYW 219 (302)
Q Consensus 201 ~~~~CI~CG~C~~aCP~~~ 219 (302)
+...|+.||.|+.+||...
T Consensus 48 d~~~C~~Cg~Cv~~CP~~A 66 (374)
T TIGR02512 48 DESNCIGCGQCSLVCPVGA 66 (374)
T ss_pred CcccCcCccCHHHhCCCCh
Confidence 4568999999999999755
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=50.93 E-value=6.5 Score=40.66 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.3
Q ss_pred cccCcccccccccCCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~ 278 (302)
...|+.||-|+..||.++-
T Consensus 48 e~~c~~c~~c~~~cp~~a~ 66 (590)
T PRK13409 48 EELCIGCGICVKKCPFDAI 66 (590)
T ss_pred HhhccccccccccCCcceE
Confidence 3479999999999998864
No 345
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=50.81 E-value=5.4 Score=39.25 Aligned_cols=18 Identities=33% Similarity=0.731 Sum_probs=15.9
Q ss_pred cccccCcccCcccCCCCC
Q 045926 200 DGLYECILCACCTTSCPS 217 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~ 217 (302)
.+...|+.||.|+.+||.
T Consensus 374 i~~~~C~~Cg~C~~~CP~ 391 (420)
T PRK08318 374 VIEEECVGCNLCAHVCPV 391 (420)
T ss_pred echhhCcccchHHhhCCC
Confidence 346789999999999998
No 346
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=49.20 E-value=5.3 Score=36.21 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=16.4
Q ss_pred cccCcccCcccCCCCCccc
Q 045926 202 LYECILCACCTTSCPSYWW 220 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~ 220 (302)
...|+.||.|+.+||+...
T Consensus 189 ~~~C~~Cg~Cv~vCP~gAL 207 (234)
T PRK07569 189 SETCTSCGKCVQACPTGAI 207 (234)
T ss_pred cccccchHHHHHhCCCCcE
Confidence 4589999999999998764
No 347
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=49.05 E-value=7.3 Score=41.94 Aligned_cols=19 Identities=26% Similarity=0.744 Sum_probs=16.7
Q ss_pred cccCcccCcccCCCCCccc
Q 045926 202 LYECILCACCTTSCPSYWW 220 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~~ 220 (302)
...|+.||.|+.+||+...
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL 221 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGAL 221 (819)
T ss_pred cccccccCcHHHhCCCCcc
Confidence 4689999999999999764
No 348
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=48.92 E-value=43 Score=24.07 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=29.2
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecc
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVA 132 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~la 132 (302)
-.+...+ +.||-++|..+... .|.+.. =..|.|.|||+.+..
T Consensus 14 ~~~~~~~-~~tv~~ll~~l~~~-~p~~~~--------~~~~~v~vN~~~v~~ 55 (77)
T PF02597_consen 14 EEIEVPE-GSTVRDLLEALAER-YPELAL--------RDRVAVAVNGEIVPD 55 (77)
T ss_dssp EEEEESS-TSBHHHHHHHHCHH-TGGGHT--------TTTEEEEETTEEEGG
T ss_pred eEEecCC-CCcHHHHHHHHHhh-cccccc--------CccEEEEECCEEcCC
Confidence 3455555 89999999998743 454441 124899999987766
No 349
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=48.12 E-value=48 Score=24.03 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=34.1
Q ss_pred EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccCCCCCceEEc
Q 045926 81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIIT 148 (302)
Q Consensus 81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~~~~~Ie 148 (302)
.++++++ +.||-|++..+... -|.+.. .-+ ..+.|.|||+.+. =.+.+.+ ++.+.|-
T Consensus 18 ~~~~~~~-~~tv~~ll~~l~~~-~~~~~~--~~~----~~~~v~vNg~~v~-~~~~l~~--gD~v~i~ 74 (80)
T cd00754 18 EELELPE-GATVGELLDALEAR-YPGLLE--ELL----ARVRIAVNGEYVR-LDTPLKD--GDEVAII 74 (80)
T ss_pred EEEECCC-CCcHHHHHHHHHHH-CchHHH--hhh----hcEEEEECCeEcC-CCcccCC--CCEEEEe
Confidence 5667766 89999999988643 333100 001 1369999998775 2344544 4455543
No 350
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=47.85 E-value=7.4 Score=38.19 Aligned_cols=16 Identities=25% Similarity=0.704 Sum_probs=14.6
Q ss_pred cccCcccCcccCCCCC
Q 045926 202 LYECILCACCTTSCPS 217 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~ 217 (302)
.+.|.+||.|...||.
T Consensus 66 a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 66 ANLCHNCGACLHACQY 81 (389)
T ss_pred HHhCcCcccccccCcC
Confidence 4579999999999997
No 351
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=47.68 E-value=7.5 Score=42.82 Aligned_cols=20 Identities=25% Similarity=0.680 Sum_probs=17.4
Q ss_pred cccCccc----ccccccCCCCCCH
Q 045926 260 LYRCRAI----KNCTATCPKGLDP 279 (302)
Q Consensus 260 ~~~C~~C----g~C~~vCP~gI~~ 279 (302)
..+|.+| |.|+.+||.++++
T Consensus 885 ~~rC~~C~~~C~~C~~vCP~~A~~ 908 (1019)
T PRK09853 885 AARCLECNYVCEKCVDVCPNRANV 908 (1019)
T ss_pred ccccCCcccccchhhhhCCccccc
Confidence 4589999 9999999999853
No 352
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=47.42 E-value=5.3 Score=36.27 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=15.6
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.|+.|..+||.++
T Consensus 173 ~~~C~~C~~C~~aCP~~a 190 (228)
T TIGR03294 173 QGLCMGCGTCAAACPTRA 190 (228)
T ss_pred hhhCcChhHHHHhCCHhh
Confidence 358999999999999765
No 353
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=46.77 E-value=7.8 Score=36.34 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=15.9
Q ss_pred ccCcccccccccCCCCCC
Q 045926 261 YRCRAIKNCTATCPKGLD 278 (302)
Q Consensus 261 ~~C~~Cg~C~~vCP~gI~ 278 (302)
..|..||.|.++|+.++-
T Consensus 69 e~C~~CG~C~~vC~f~Ai 86 (284)
T COG1149 69 EKCIRCGKCAEVCRFGAI 86 (284)
T ss_pred hhccccCcHHHhCCCCeE
Confidence 459999999999999874
No 354
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=46.28 E-value=43 Score=23.94 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=22.3
Q ss_pred eEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCE
Q 045926 79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGT 128 (302)
Q Consensus 79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~ 128 (302)
+.+++ .+ +.||.++|..++. .+ . ..+|.+||.
T Consensus 8 ~~~~~--~~-~~tl~~ll~~l~~--~~----~---------~vav~~N~~ 39 (65)
T PRK05863 8 EQVEV--DE-QTTVAALLDSLGF--PE----K---------GIAVAVDWS 39 (65)
T ss_pred EEEEc--CC-CCcHHHHHHHcCC--CC----C---------cEEEEECCc
Confidence 44555 35 7999999998763 11 1 269999997
No 355
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=45.94 E-value=7.9 Score=39.08 Aligned_cols=17 Identities=35% Similarity=0.747 Sum_probs=14.8
Q ss_pred ccCcccCcccCCCCCcc
Q 045926 203 YECILCACCTTSCPSYW 219 (302)
Q Consensus 203 ~~CI~CG~C~~aCP~~~ 219 (302)
..||.||.|+.-||.-.
T Consensus 50 ~lCiGCGICvkkCPF~A 66 (591)
T COG1245 50 ELCIGCGICVKKCPFDA 66 (591)
T ss_pred hhhccchhhhccCCcce
Confidence 45999999999999765
No 356
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=45.69 E-value=16 Score=40.08 Aligned_cols=29 Identities=28% Similarity=0.653 Sum_probs=21.8
Q ss_pred cccccCCCCCccCccEEEE--CCEE--eccccc
Q 045926 107 LSYRRSCREGICGSCAMNI--GGTN--TVACLK 135 (302)
Q Consensus 107 L~~~~~C~~g~CG~C~V~V--nG~~--~laC~t 135 (302)
|.-+..|..|+||.|.|.+ +|+. .+.|..
T Consensus 877 lE~~M~CG~G~C~~C~v~~~~~G~~~~~~vC~D 909 (944)
T PRK12779 877 LNSIMVDATGMCGACMVPVTIDGKMVRKHACID 909 (944)
T ss_pred ecccccCCCeeeCeeeeeeecCCeeeeeEEECC
Confidence 5555679999999999975 6753 567863
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=44.41 E-value=7.9 Score=40.07 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.3
Q ss_pred cccCcccCcccCCCCCcc
Q 045926 202 LYECILCACCTTSCPSYW 219 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~ 219 (302)
-.-||.||.|+.-||.-.
T Consensus 48 e~~c~~c~~c~~~cp~~a 65 (590)
T PRK13409 48 EELCIGCGICVKKCPFDA 65 (590)
T ss_pred HhhccccccccccCCcce
Confidence 356999999999999755
No 358
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=43.98 E-value=36 Score=23.99 Aligned_cols=33 Identities=36% Similarity=0.534 Sum_probs=22.7
Q ss_pred ecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEe
Q 045926 84 DLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNT 130 (302)
Q Consensus 84 ~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~ 130 (302)
++++ |.|++|++..|+. +|.-+ +-+..|||+.+
T Consensus 12 ~~~~-g~T~~d~A~~I~~----~l~~~---------~~~A~Vng~~v 44 (60)
T PF02824_consen 12 ELPE-GSTVLDVAYSIHS----SLAKR---------AVAAKVNGQLV 44 (60)
T ss_dssp EEET-TBBHHHHHHHHSH----HHHHC---------EEEEEETTEEE
T ss_pred eCCC-CCCHHHHHHHHCH----HHHhh---------eeEEEEcCEEC
Confidence 3456 9999999999874 24332 24678999644
No 359
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=43.38 E-value=7.9 Score=35.60 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=23.5
Q ss_pred ceeEEEEecCCCchhHHHHHHHcccccCCCcccc
Q 045926 77 FLQSYHVDLSECGPMVLDALQKIKAETDSSLSYR 110 (302)
Q Consensus 77 ~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~ 110 (302)
.+-+|.+. ..|.|+-.|||++=....|+++..
T Consensus 11 ~~~~f~~~--g~~~s~~NalRRills~vp~~Ai~ 42 (259)
T cd07030 11 DRARFVLE--GVPPAFANAIRRAIISEVPTLAID 42 (259)
T ss_pred CEEEEEEe--CCCHHHHHHHHHHHHhcCCeeeEE
Confidence 44556665 347899999999655678888875
No 360
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=43.33 E-value=8.3 Score=37.19 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=18.1
Q ss_pred ccCcccccccccCCCCCCHHH
Q 045926 261 YRCRAIKNCTATCPKGLDPAD 281 (302)
Q Consensus 261 ~~C~~Cg~C~~vCP~gI~~~~ 281 (302)
..|-.|..|.++||++.-...
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~ 205 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAP 205 (337)
T ss_pred ccChhhHHHHhhCCcccccCC
Confidence 789999999999999986433
No 361
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=43.30 E-value=8.5 Score=36.67 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=17.0
Q ss_pred cccccCcccCcccCCCCCcc
Q 045926 200 DGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~~ 219 (302)
-+..+||.||.|..+||...
T Consensus 218 I~~~~ci~c~~c~~ac~~ga 237 (354)
T COG2768 218 IDYEKCIGCGQCMEACPYGA 237 (354)
T ss_pred echhhccchhhhhhhccCcc
Confidence 35679999999999999765
No 362
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=42.78 E-value=8.3 Score=35.56 Aligned_cols=32 Identities=9% Similarity=0.188 Sum_probs=22.0
Q ss_pred ceeEEEEecCCCchhHHHHHHHcccccCCCcccc
Q 045926 77 FLQSYHVDLSECGPMVLDALQKIKAETDSSLSYR 110 (302)
Q Consensus 77 ~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~ 110 (302)
.+-+|.+. ..|.|+-.|||++=....|+++..
T Consensus 11 ~~~~f~~~--g~~~t~~NalRRvlls~vp~~Ai~ 42 (263)
T PRK00783 11 RSARFVVE--GVTPAFANAIRRAMIADVPTMAID 42 (263)
T ss_pred cEEEEEEe--CCCHHHHHHHHHHHHHcCCeeeEE
Confidence 34556663 347889999998655568888775
No 363
>PRK13795 hypothetical protein; Provisional
Probab=42.54 E-value=8.5 Score=40.24 Aligned_cols=18 Identities=28% Similarity=0.737 Sum_probs=16.0
Q ss_pred cccCcccccccccCCCCC
Q 045926 260 LYRCRAIKNCTATCPKGL 277 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI 277 (302)
...|+.||.|..+||.++
T Consensus 580 ~~~C~~Cg~C~~~CP~~a 597 (636)
T PRK13795 580 AAECVGCGVCVGACPTGA 597 (636)
T ss_pred cccCCCHhHHHHhCCccc
Confidence 458999999999999875
No 364
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=42.14 E-value=11 Score=34.47 Aligned_cols=18 Identities=28% Similarity=0.857 Sum_probs=14.4
Q ss_pred cccccCCCCCccCccEEE
Q 045926 107 LSYRRSCREGICGSCAMN 124 (302)
Q Consensus 107 L~~~~~C~~g~CG~C~V~ 124 (302)
+..+-.|..|+||+|.|.
T Consensus 225 ~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 225 YERKMCCGVGKCGHCKID 242 (263)
T ss_pred ecceeEccCcccCCcccC
Confidence 444456999999999987
No 365
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=41.60 E-value=12 Score=34.38 Aligned_cols=24 Identities=29% Similarity=0.845 Sum_probs=17.3
Q ss_pred cccccCCCCCccCccEEEECCEEecccc
Q 045926 107 LSYRRSCREGICGSCAMNIGGTNTVACL 134 (302)
Q Consensus 107 L~~~~~C~~g~CG~C~V~VnG~~~laC~ 134 (302)
+..+-.|..|+||.|.|. + .+.|.
T Consensus 223 ~~~~m~cg~g~c~~c~~~--~--~~~c~ 246 (261)
T TIGR02911 223 YERKMCCGVGKCGHCKID--D--VYVCL 246 (261)
T ss_pred eccceeccCcCCCCcccC--C--EEEEC
Confidence 444456999999999887 2 45664
No 366
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=41.40 E-value=17 Score=36.48 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.8
Q ss_pred cccCccccc--ccc--cCCCCCCHHHHHHHHH
Q 045926 260 LYRCRAIKN--CTA--TCPKGLDPADAIHKMK 287 (302)
Q Consensus 260 ~~~C~~Cg~--C~~--vCP~gI~~~~~I~~lR 287 (302)
..+|+.|+. |.. .||.++++.+.|..++
T Consensus 41 ~~rc~~c~~~~C~~~~~CP~~~~i~~~~~~~~ 72 (485)
T TIGR01317 41 AARCMDCGTPFCHNDSGCPLNNLIPEFNDLVF 72 (485)
T ss_pred HHhccCCCCCCCCCCCCCCCCCcHHHHHHHHH
Confidence 468999987 999 9999999999888776
No 367
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=41.09 E-value=8.7 Score=37.62 Aligned_cols=16 Identities=38% Similarity=0.916 Sum_probs=14.4
Q ss_pred cCcccCcccCCCCCcc
Q 045926 204 ECILCACCTTSCPSYW 219 (302)
Q Consensus 204 ~CI~CG~C~~aCP~~~ 219 (302)
.||.|++|..+|+...
T Consensus 246 ~CI~C~~CidaCd~~~ 261 (386)
T COG0348 246 ECIGCGRCIDACDDDM 261 (386)
T ss_pred ccccHhhHhhhCCHHh
Confidence 6999999999999765
No 368
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=39.74 E-value=64 Score=23.83 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=34.9
Q ss_pred eEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccCCCCCceEEc
Q 045926 79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIIT 148 (302)
Q Consensus 79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~~~~~Ie 148 (302)
..-++++++ |.|+-+.+..+... .|.|.- ....+.|.|||+.+ .=.+.+.+ ++.+.|-
T Consensus 19 ~~~~~~~~~-~~tv~~L~~~l~~~-~p~l~~-------~~~~~~vavN~~~v-~~~~~l~d--gDeVai~ 76 (82)
T PLN02799 19 SDMTLELPA-GSTTADCLAELVAK-FPSLEE-------VRSCCVLALNEEYT-TESAALKD--GDELAII 76 (82)
T ss_pred CeEEEECCC-CCcHHHHHHHHHHH-ChhHHH-------HhhCcEEEECCEEc-CCCcCcCC--CCEEEEe
Confidence 345566666 89998888887644 355542 11237899999975 23344444 4455443
No 369
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=39.15 E-value=17 Score=34.75 Aligned_cols=21 Identities=38% Similarity=0.969 Sum_probs=17.7
Q ss_pred ccccccCcccCcccCCCCCcc
Q 045926 199 LDGLYECILCACCTTSCPSYW 219 (302)
Q Consensus 199 ~~~~~~CI~CG~C~~aCP~~~ 219 (302)
...+..|..|++|+.+||+..
T Consensus 54 ~~~~~~C~~C~~C~~~CP~~i 74 (388)
T COG0247 54 YEALDTCLACGACATACPSGI 74 (388)
T ss_pred HHHHHhCcCccchHhhCCCCC
Confidence 344678999999999999875
No 370
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=38.88 E-value=1.1e+02 Score=21.55 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=26.3
Q ss_pred eEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecc---ccccccC
Q 045926 79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVA---CLKPIDG 139 (302)
Q Consensus 79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~la---C~t~v~~ 139 (302)
+.+++ + ..||.+.|.+++. .+ ...+|.|||..+.- -.|.+.+
T Consensus 8 ~~~~~---~-~~tl~~Ll~~l~~--~~-------------~~vavavN~~iv~~~~~~~~~L~d 52 (65)
T PRK06488 8 ETLQT---E-ATTLALLLAELDY--EG-------------NWLATAVNGELVHKEARAQFVLHE 52 (65)
T ss_pred eEEEc---C-cCcHHHHHHHcCC--CC-------------CeEEEEECCEEcCHHHcCccccCC
Confidence 44665 3 4789999988752 11 12589999986541 2455655
No 371
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=38.68 E-value=18 Score=39.62 Aligned_cols=29 Identities=14% Similarity=0.469 Sum_probs=25.2
Q ss_pred cccCccccc--c------------cccCCCCCCHHHHHHHHHH
Q 045926 260 LYRCRAIKN--C------------TATCPKGLDPADAIHKMKT 288 (302)
Q Consensus 260 ~~~C~~Cg~--C------------~~vCP~gI~~~~~I~~lR~ 288 (302)
..+|..||. | +..||.++++.+.|..+++
T Consensus 187 a~RC~~C~~p~C~~~~~~~~~~~~~~~CP~~~~Ip~~i~~i~~ 229 (944)
T PRK12779 187 VMRDKQCDDKPCELGVLVQGKAEPKGGCPVKIHIPEMLDLLGN 229 (944)
T ss_pred HHHhcCCCCCCCCCCcccccccCcCCCCcCCCcHHHHHHHHHC
Confidence 458999998 9 6799999999999988774
No 372
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=38.58 E-value=10 Score=38.72 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=13.9
Q ss_pred cccccCcccCcccCCCCCc
Q 045926 200 DGLYECILCACCTTSCPSY 218 (302)
Q Consensus 200 ~~~~~CI~CG~C~~aCP~~ 218 (302)
.+...|+.||.|..+||..
T Consensus 538 i~~~~C~~Cg~C~~~CP~~ 556 (564)
T PRK12771 538 FDYDKCTGCHICADVCPCG 556 (564)
T ss_pred EecccCcChhHHHhhcCcC
Confidence 3456788888888888853
No 373
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=36.74 E-value=12 Score=38.60 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=14.7
Q ss_pred cCcccCcccCCCCCccc
Q 045926 204 ECILCACCTTSCPSYWW 220 (302)
Q Consensus 204 ~CI~CG~C~~aCP~~~~ 220 (302)
.|..||.|+.+||+...
T Consensus 183 ~~~~cg~cv~vCP~GAl 199 (603)
T TIGR01973 183 ESELSGNLIDICPVGAL 199 (603)
T ss_pred CCcccCChHhhCCcccc
Confidence 57789999999999764
No 374
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=36.27 E-value=14 Score=36.46 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=18.1
Q ss_pred hhccccccCcccCcccCCCCCc
Q 045926 197 KKLDGLYECILCACCTTSCPSY 218 (302)
Q Consensus 197 ~~~~~~~~CI~CG~C~~aCP~~ 218 (302)
+...+..+|+.|+.|.++||..
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~a 287 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPKA 287 (402)
T ss_pred eEEEcchhcCcCccccccCccc
Confidence 3455677999999999999974
No 375
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=36.02 E-value=12 Score=29.61 Aligned_cols=21 Identities=29% Similarity=0.668 Sum_probs=17.7
Q ss_pred hhccccccCcccCcccCCCCC
Q 045926 197 KKLDGLYECILCACCTTSCPS 217 (302)
Q Consensus 197 ~~~~~~~~CI~CG~C~~aCP~ 217 (302)
....+...|+.||.|.-+||.
T Consensus 59 ~l~~~yegClECGTCRvlc~~ 79 (99)
T COG2440 59 KLRFDYEGCLECGTCRVLCPH 79 (99)
T ss_pred cEEEeecCeeeccceeEecCC
Confidence 345567789999999999996
No 376
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=35.96 E-value=1.1e+02 Score=22.53 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=33.5
Q ss_pred EEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccCCCCCceEEcc
Q 045926 82 HVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITP 149 (302)
Q Consensus 82 ~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~~~~~Iep 149 (302)
++++...+.|+-+.+..+... -|.|.- .+ +.|.|.|||+.+.. .+.+.+ ++.+.|-|
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~-~p~l~~---~~----~~~~v~vn~~~v~~-~~~l~d--gDevai~P 75 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKE-GPELAA---SR----GQVMVAVNEEYVTD-DALLNE--GDEVAFIP 75 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHh-Cchhhh---hc----cceEEEECCEEcCC-CcCcCC--CCEEEEeC
Confidence 455554248888888887643 343311 11 24789999997653 566655 44554443
No 377
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=35.87 E-value=94 Score=22.37 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=22.8
Q ss_pred eEEEEecCCCc-hhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEe
Q 045926 79 QSYHVDLSECG-PMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNT 130 (302)
Q Consensus 79 ~~y~v~~~~~g-~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~ 130 (302)
++++++ + + .||.|+|..++. ++. ..+|++||..+
T Consensus 8 ~~~~~~--~-~~~tv~~lL~~l~~--~~~-------------~vav~vN~~iv 42 (67)
T PRK07696 8 NQIEVP--E-SVKTVAELLTHLEL--DNK-------------IVVVERNKDIL 42 (67)
T ss_pred EEEEcC--C-CcccHHHHHHHcCC--CCC-------------eEEEEECCEEe
Confidence 445554 4 5 689999988763 221 26999999754
No 378
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=35.73 E-value=14 Score=37.07 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=25.7
Q ss_pred cccCcccc-cccccCCCCCCHHHHHHHHHHH
Q 045926 260 LYRCRAIK-NCTATCPKGLDPADAIHKMKTK 289 (302)
Q Consensus 260 ~~~C~~Cg-~C~~vCP~gI~~~~~I~~lR~~ 289 (302)
..+|..|+ .|...||.+.++...|..+|.-
T Consensus 22 a~rCl~C~~~C~~~cp~~~~IP~~~~lv~~g 52 (457)
T COG0493 22 AARCLDCGDPCITGCPVHNDIPEPIGLVREG 52 (457)
T ss_pred HHHHHcCCCccccCCcCCCcCCCHHHHHhcC
Confidence 45899999 6999999999999988888753
No 379
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=35.71 E-value=14 Score=40.87 Aligned_cols=18 Identities=28% Similarity=0.820 Sum_probs=15.9
Q ss_pred ccCcc----cccccccCCCCCC
Q 045926 261 YRCRA----IKNCTATCPKGLD 278 (302)
Q Consensus 261 ~~C~~----Cg~C~~vCP~gI~ 278 (302)
.+|+. ||.|+.+||.++.
T Consensus 881 ~rC~~c~~~Cg~Cv~vCP~~Ai 902 (1012)
T TIGR03315 881 QRCLECSYVCEKCVDVCPNRAN 902 (1012)
T ss_pred ccccCCCCCCCChhhhCChhhh
Confidence 58996 9999999999963
No 380
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=34.99 E-value=11 Score=38.97 Aligned_cols=14 Identities=36% Similarity=1.006 Sum_probs=13.2
Q ss_pred cCcccCcccCCCCC
Q 045926 204 ECILCACCTTSCPS 217 (302)
Q Consensus 204 ~CI~CG~C~~aCP~ 217 (302)
.|+.||.|+.+||.
T Consensus 579 ~C~~Cg~C~~~CP~ 592 (595)
T TIGR03336 579 LCTGCGVCAQICPF 592 (595)
T ss_pred CCcCHHHHHhhCcc
Confidence 69999999999996
No 381
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=34.71 E-value=16 Score=36.02 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=17.5
Q ss_pred cccCcccccccccCCCCCCHH
Q 045926 260 LYRCRAIKNCTATCPKGLDPA 280 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~gI~~~ 280 (302)
...|+.||.|..+||+.+.+.
T Consensus 271 ~~~C~~Cm~Ci~~~p~a~~~g 291 (402)
T TIGR02064 271 NRECVRCMHCINKMPKALHPG 291 (402)
T ss_pred chhcCcCccccccCcccccCC
Confidence 458999999999999876653
No 382
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=34.33 E-value=20 Score=35.21 Aligned_cols=25 Identities=28% Similarity=0.711 Sum_probs=20.7
Q ss_pred HhhccccccCcccCcccCCCCCccc
Q 045926 196 RKKLDGLYECILCACCTTSCPSYWW 220 (302)
Q Consensus 196 ~~~~~~~~~CI~CG~C~~aCP~~~~ 220 (302)
...+..+++||.|..|+-.|-..|.
T Consensus 7 v~MvmnLDKCIGCHTCSvTCKnvWT 31 (513)
T COG1140 7 VGMVLNLDKCIGCHTCSVTCKNVWT 31 (513)
T ss_pred hhHhhcccccccccccceeeccccc
Confidence 3456788999999999999987763
No 383
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=33.64 E-value=1.1e+02 Score=21.42 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=21.8
Q ss_pred EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEe
Q 045926 83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNT 130 (302)
Q Consensus 83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~ 130 (302)
+++++ +.||.++|..++. .+. -+|.+||..+
T Consensus 10 ~~~~~-~~tl~~ll~~l~~--~~~--------------~~v~vN~~~v 40 (65)
T PRK06944 10 LSLPD-GATVADALAAYGA--RPP--------------FAVAVNGDFV 40 (65)
T ss_pred EECCC-CCcHHHHHHhhCC--CCC--------------eEEEECCEEc
Confidence 34445 8999999998763 221 3789999864
No 384
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=33.33 E-value=1.1e+02 Score=23.76 Aligned_cols=63 Identities=10% Similarity=-0.059 Sum_probs=35.9
Q ss_pred EecCCCchhHHHHHHHcccccCCCcccccCC-CCCccCccEEEECCEEec---cccccccCCCCCceEEcc
Q 045926 83 VDLSECGPMVLDALQKIKAETDSSLSYRRSC-REGICGSCAMNIGGTNTV---ACLKPIDGDTSKPTIITP 149 (302)
Q Consensus 83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C-~~g~CG~C~V~VnG~~~l---aC~t~v~~~~~~~~~Iep 149 (302)
++.++ +.||-|+|..+...+.+ +.-+--+ ....-..=.|.|||+.+. .=.|.+.+ ++.+.|-|
T Consensus 23 ~~~~~-~~tV~dll~~L~~~~~~-~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~d--gD~v~i~P 89 (94)
T cd01764 23 LDGEK-PVTVGDLLDYVASNLLE-ERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILED--GDHVVFIS 89 (94)
T ss_pred ccCCC-CCcHHHHHHHHHHhCch-hhhhhEecCCcccCCEEEEECCccccccCCcccCCCC--cCEEEEEC
Confidence 44434 78999999988655422 1111001 112333457999998652 45677776 45666655
No 385
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=32.84 E-value=33 Score=33.93 Aligned_cols=23 Identities=26% Similarity=0.774 Sum_probs=18.4
Q ss_pred hhccccccCccc--CcccCCCCCcc
Q 045926 197 KKLDGLYECILC--ACCTTSCPSYW 219 (302)
Q Consensus 197 ~~~~~~~~CI~C--G~C~~aCP~~~ 219 (302)
....+...|+.| ..|+.+||...
T Consensus 34 ~~~~e~~rc~~c~~~~c~~~cp~~~ 58 (457)
T PRK11749 34 EAIEEASRCLQCKDAPCVKACPVSI 58 (457)
T ss_pred HHHHHHHHhhCCCCCcccccCCCcC
Confidence 344567899999 88999999865
No 386
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=32.73 E-value=13 Score=36.61 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=15.2
Q ss_pred cccCcccCcccCCCCCcc
Q 045926 202 LYECILCACCTTSCPSYW 219 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~ 219 (302)
...|+.|+.|+.+||...
T Consensus 38 ~~~C~~C~~C~~~CP~~A 55 (411)
T TIGR03224 38 ADVCNGCMACVSPCPTGA 55 (411)
T ss_pred cccCcCHHHHHhhcCccc
Confidence 456999999999999754
No 387
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=32.15 E-value=31 Score=38.10 Aligned_cols=46 Identities=30% Similarity=0.725 Sum_probs=31.1
Q ss_pred hhHHHHHHHccc----ccCCCccccc---CCC-CCccCccEEEECCEE--eccccc
Q 045926 90 PMVLDALQKIKA----ETDSSLSYRR---SCR-EGICGSCAMNIGGTN--TVACLK 135 (302)
Q Consensus 90 ~tvLdal~~i~~----~~dptL~~~~---~C~-~g~CG~C~V~VnG~~--~laC~t 135 (302)
..++.++..+.. ...+++.--- -|. .|+||.|.+.++|+. ++||..
T Consensus 944 ~~mm~~~~~~~~~~~~~~~~~i~svns~M~c~m~giC~qC~~~~~G~~k~vfaC~~ 999 (1028)
T PRK06567 944 PEIIEELQSLKNEIFGENTEIIVSVNSSMQCMMKGICGQCIQKVKGEQKYIFACSQ 999 (1028)
T ss_pred HHHHHHHHHHHhhhccCCCcEEEecCcHHHHHhhhhhhhheEEecCeeEEEEEecC
Confidence 446777766542 1233333322 398 899999999999964 499987
No 388
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=31.04 E-value=34 Score=33.48 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=15.2
Q ss_pred cccCcccCcccCCCCCc
Q 045926 202 LYECILCACCTTSCPSY 218 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~ 218 (302)
.+.|-+||.|..+||..
T Consensus 47 a~lChnC~~C~~~CPy~ 63 (372)
T TIGR02484 47 AHLCHDCQSCWHDCQYA 63 (372)
T ss_pred HHHCcCcccccccCcCC
Confidence 67899999999999974
No 389
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=30.91 E-value=63 Score=24.13 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=22.5
Q ss_pred EEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHccc
Q 045926 62 FRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKA 101 (302)
Q Consensus 62 ~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~ 101 (302)
+|||-=.| +..|.|.+- +.+.. |.|++|++..++.
T Consensus 2 irvytk~~---g~~~d~~~~-liL~~-GaTV~D~a~~iH~ 36 (75)
T cd01666 2 IRVYTKPK---GQEPDFDEP-VILRR-GSTVEDVCNKIHK 36 (75)
T ss_pred EEEEeCCC---CCCCCCCCC-EEECC-CCCHHHHHHHHHH
Confidence 56776332 345655543 33445 9999999998864
No 390
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=27.98 E-value=1.1e+02 Score=22.65 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=38.3
Q ss_pred eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccccc
Q 045926 59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID 138 (302)
Q Consensus 59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~ 138 (302)
|++|+.|-.=.+. .. -.+++++. + +.||-+++..+...+ |.+.-. -..+ ...+-|||..+ .=.|.+.
T Consensus 1 ~v~V~~Fa~lre~---~g-~~~~~v~~-~-~~tv~~l~~~L~~~~-~~~~~~--~~~~---~~~~aVN~~~~-~~~~~l~ 67 (81)
T PRK11130 1 MIKVLFFAQVREL---VG-TDALELAA-D-FPTVEALRQHLAQKG-DRWALA--LEDG---KLLAAVNQTLV-SFDHPLT 67 (81)
T ss_pred CEEEEEeHHHHHH---hC-CceEEecC-C-CCCHHHHHHHHHHhC-ccHHhh--hcCC---CEEEEECCEEc-CCCCCCC
Confidence 4566666532121 11 13455552 3 689999888876443 543211 1112 24678899754 2245555
Q ss_pred CCCCCceEEcc
Q 045926 139 GDTSKPTIITP 149 (302)
Q Consensus 139 ~~~~~~~~Iep 149 (302)
+ ++.+.|-|
T Consensus 68 d--gDeVai~P 76 (81)
T PRK11130 68 D--GDEVAFFP 76 (81)
T ss_pred C--CCEEEEeC
Confidence 4 44555444
No 391
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=27.82 E-value=17 Score=34.38 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=14.0
Q ss_pred cccCcccccccccCCC
Q 045926 260 LYRCRAIKNCTATCPK 275 (302)
Q Consensus 260 ~~~C~~Cg~C~~vCP~ 275 (302)
...|+.||+|+.+|-.
T Consensus 211 ~nKCIlCgRCVRaC~E 226 (297)
T PTZ00305 211 LNRCIHCTRCVRFLNE 226 (297)
T ss_pred CCcCcCccHHHHHHHH
Confidence 4689999999999964
No 392
>PRK13669 hypothetical protein; Provisional
Probab=27.12 E-value=42 Score=25.45 Aligned_cols=29 Identities=28% Similarity=0.634 Sum_probs=21.4
Q ss_pred cCCCcc-cccCCCCCccCccEE----EECCEEecc
Q 045926 103 TDSSLS-YRRSCREGICGSCAM----NIGGTNTVA 132 (302)
Q Consensus 103 ~dptL~-~~~~C~~g~CG~C~V----~VnG~~~la 132 (302)
.+|.+. ...+|- +.||.|.. .|||+.+.|
T Consensus 25 ~dP~~dVie~gCl-s~CG~C~~~~FAlVng~~V~a 58 (78)
T PRK13669 25 KDPNLDVLEYGCL-GYCGICSEGLFALVNGEVVEG 58 (78)
T ss_pred hCCCceEEEcchh-hhCcCcccCceEEECCeEeec
Confidence 388888 445784 48888875 899987654
No 393
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=26.10 E-value=77 Score=31.82 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=18.5
Q ss_pred hhccccccCcccCc--ccC--CCCCcc
Q 045926 197 KKLDGLYECILCAC--CTT--SCPSYW 219 (302)
Q Consensus 197 ~~~~~~~~CI~CG~--C~~--aCP~~~ 219 (302)
......++|+.|+. |.. +||+..
T Consensus 36 ~~~~~~~rc~~c~~~~C~~~~~CP~~~ 62 (485)
T TIGR01317 36 SAKYQAARCMDCGTPFCHNDSGCPLNN 62 (485)
T ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCC
Confidence 34566789999976 999 999865
No 394
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=26.02 E-value=17 Score=32.93 Aligned_cols=30 Identities=30% Similarity=0.683 Sum_probs=22.8
Q ss_pred cccccCcccccccccCCC-------CCCHHHHHHHHH
Q 045926 258 RKLYRCRAIKNCTATCPK-------GLDPADAIHKMK 287 (302)
Q Consensus 258 ~~~~~C~~Cg~C~~vCP~-------gI~~~~~I~~lR 287 (302)
+++|.|+.|--|+..||. -+-|+-+++.-|
T Consensus 189 DGlYECILCACCsTSCPSYWWN~ekYLGPAvLmqAyR 225 (288)
T KOG3049|consen 189 DGLYECILCACCSTSCPSYWWNSEKYLGPAVLMQAYR 225 (288)
T ss_pred ccHHHHHHHHHhcCCCcccccCcccccCHHHHHHHHh
Confidence 489999999999999994 233665665555
No 395
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=25.99 E-value=65 Score=24.37 Aligned_cols=28 Identities=29% Similarity=0.597 Sum_probs=20.1
Q ss_pred CCCcccc-cCCCCCccCccEE----EECCEEecc
Q 045926 104 DSSLSYR-RSCREGICGSCAM----NIGGTNTVA 132 (302)
Q Consensus 104 dptL~~~-~~C~~g~CG~C~V----~VnG~~~la 132 (302)
+|.+... .+| .|.||.|.. .|||+.+.|
T Consensus 26 ~p~~~Vie~gC-l~~Cg~C~~~pFAlVnG~~V~A 58 (78)
T PF07293_consen 26 DPDIDVIEYGC-LSYCGPCAKKPFALVNGEIVAA 58 (78)
T ss_pred CCCccEEEcCh-hhhCcCCCCCccEEECCEEEec
Confidence 5777654 467 458888875 899987754
No 396
>PF15253 STIL_N: SCL-interrupting locus protein N-terminus
Probab=24.88 E-value=53 Score=32.53 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.2
Q ss_pred cceeEEEEEEecCCCCC
Q 045926 56 KKVMKEFRIYRWNPDRP 72 (302)
Q Consensus 56 ~~~~~~~~I~r~~p~~~ 72 (302)
.+.-|++.|.||||...
T Consensus 58 deegvt~~iDRFDpGRe 74 (410)
T PF15253_consen 58 DEEGVTLTIDRFDPGRE 74 (410)
T ss_pred CCCceEEeccccccccc
Confidence 44569999999999984
No 397
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=24.70 E-value=34 Score=30.24 Aligned_cols=18 Identities=28% Similarity=0.717 Sum_probs=15.5
Q ss_pred cccCcccCcccCCCCCcc
Q 045926 202 LYECILCACCTTSCPSYW 219 (302)
Q Consensus 202 ~~~CI~CG~C~~aCP~~~ 219 (302)
.+-|..|+.|+..||+.-
T Consensus 144 ~dlCTGC~lCva~CPtdc 161 (198)
T COG2878 144 ADLCTGCDLCVAPCPTDC 161 (198)
T ss_pred HHHhcCCCcccCCCCCCc
Confidence 456999999999999864
No 398
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=20.92 E-value=48 Score=35.60 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=15.7
Q ss_pred ccCcccCcccCCCCCcccC
Q 045926 203 YECILCACCTTSCPSYWWN 221 (302)
Q Consensus 203 ~~CI~CG~C~~aCP~~~~~ 221 (302)
..|..||.|+.+||+....
T Consensus 190 ~~~~~cG~cv~vCP~GAl~ 208 (797)
T PRK07860 190 FQSYFSGNTVQICPVGALT 208 (797)
T ss_pred cCccccCCchhhCCccccc
Confidence 3578999999999997643
Done!