BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045928
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis
thaliana GN=At4g11170 PE=2 SV=1
Length = 1095
Score = 95.9 bits (237), Expect = 7e-20, Method: Composition-based stats.
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 1 MASFSGNNKKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNRGNEISESL--A 58
MAS S N+ +YD+F S GED ++F SHL + I TF DD + R + I L A
Sbjct: 1 MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60
Query: 59 IKASAISVIIFSEDYASSRWCLDELVEILECKK 91
I+ S ISV++FSE+YASS WCLDEL+EI++CK+
Sbjct: 61 IRESKISVVLFSENYASSSWCLDELIEIMKCKE 93
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
Length = 1144
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 11 YDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQ-LNRGNEISESL--AIKASAISVI 67
YD+F+S GEDT +FTSHLY L+ + I+TF DD+ L G I L AI+ S +++
Sbjct: 12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71
Query: 68 IFSEDYASSRWCLDELVEILECK 90
+FSE+YA+SRWCL+ELV+I+ECK
Sbjct: 72 VFSENYATSRWCLNELVKIMECK 94
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis
thaliana GN=SNC1 PE=1 SV=3
Length = 1301
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 63/91 (69%), Gaps = 4/91 (4%)
Query: 1 MASFSGNNKKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNRGNEISESL--A 58
+AS SG+ ++YD+F S GED DSF SHL L + I TFIDD++ R I L A
Sbjct: 3 IASSSGS-RRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPELLSA 60
Query: 59 IKASAISVIIFSEDYASSRWCLDELVEILEC 89
IK S I+++IFS++YASS WCL+ELVEI +C
Sbjct: 61 IKESRIAIVIFSKNYASSTWCLNELVEIHKC 91
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8
PE=2 SV=1
Length = 354
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 13 IFVSCSGEDTCDSFTSHLYSALSRQNIQTFID-DQLNRGNEISESLAIKASAISVIIFSE 71
+F++ G+D + F S L A+ NI FID D++ + ++ + I+ S ++V+IFS+
Sbjct: 16 VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLFVRIQESRVAVVIFSK 75
Query: 72 DYASSRWCLDELVEILEC 89
DY SS WCLDEL EI +C
Sbjct: 76 DYTSSEWCLDELAEIKDC 93
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5
PE=2 SV=1
Length = 411
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 13 IFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNRGNE-ISESLAIKASAISVIIFSE 71
+F++ G+D F S L AL ++ I FID+Q RG IS I S I+++IFSE
Sbjct: 24 VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLISLFDTIGESKIALVIFSE 83
Query: 72 DYASSRWCLDELVEILE 88
Y S WC+DELV+I E
Sbjct: 84 GYCESHWCMDELVKIKE 100
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 10 KYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNRGNEISESLA-IKASAISVII 68
+Y +F++ G++ +SF L A+ + I F D+ RG ++ I+ S ++V I
Sbjct: 357 QYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNYLFRRIEESRVAVAI 416
Query: 69 FSEDYASSRWCLDELVEILE 88
FSE Y S WCLDELV++ E
Sbjct: 417 FSERYTESCWCLDELVKMKE 436
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6
PE=2 SV=1
Length = 392
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 13 IFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNRGNEISESLA-IKASAISVIIFSE 71
+F+ G D F S L AL NI FID+ G+E++ L I+ S ++++IFS
Sbjct: 17 VFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMANLLTRIEESELALVIFSV 76
Query: 72 DYASSRWCLDELVEILECK 90
D+ S CL+EL +I E K
Sbjct: 77 DFTRSHRCLNELAKIKERK 95
>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana
GN=WRKY16 PE=2 SV=1
Length = 1372
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 13 IFVSCSGEDTCDSFTSHLYSALSRQNIQ-TFIDDQLNRGNEISESLAIKASAISVIIFSE 71
+++SC E+ SF SHL AL R+ + FID + NE S+S+ +A +SV+I
Sbjct: 8 VYISCI-EEVRYSFVSHLSKALQRKGVNDVFIDSDDSLSNE-SQSMVERAR-VSVMILPG 64
Query: 72 DYASSRWCLDELVEILECKK 91
+ S LD+LV++L+C+K
Sbjct: 65 NRTVS---LDKLVKVLDCQK 81
>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis
thaliana GN=PP2A7 PE=4 SV=1
Length = 332
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 20 EDTCDSFTSHLYSALSRQNIQTFIDDQLNRGNEISESLA-IKASAISVIIFSE 71
ED + L L +NI FID++ RG + I+ S IS+ IFSE
Sbjct: 51 EDVSKGLINFLEPVLQNKNINVFIDEEEVRGKGLKNLFKRIQDSKISLAIFSE 103
>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana
GN=WRKY52 PE=2 SV=3
Length = 1288
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 15 VSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNRGNEISESLA-IKASAISVIIFSEDY 73
+SC E+ SF SHL AL R+ I + D ES A I+ + +SV++ +
Sbjct: 13 ISCV-EEVRYSFVSHLSEALRRKGINNVVVDVDIDDLLFKESQAKIEKAGVSVMVLPGNC 71
Query: 74 ASSRWCLDELVEILECKK 91
S LD+ ++LEC++
Sbjct: 72 DPSEVWLDKFAKVLECQR 89
>sp|C0Q0R4|NDPA_SALPC Nucleoid-associated protein YejK OS=Salmonella paratyphi C (strain
RKS4594) GN=yejK PE=3 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|B5RC65|NDPA_SALG2 Nucleoid-associated protein YejK OS=Salmonella gallinarum (strain
287/91 / NCTC 13346) GN=yejK PE=3 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|B5R196|NDPA_SALEP Nucleoid-associated protein YejK OS=Salmonella enteritidis PT4
(strain P125109) GN=yejK PE=3 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|P67714|NDPA_SALTY Nucleoid-associated protein YejK OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=yejK PE=3 SV=2
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|P67715|NDPA_SALTI Nucleoid-associated protein YejK OS=Salmonella typhi GN=yejK PE=3
SV=2
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|B5BE10|NDPA_SALPK Nucleoid-associated protein YejK OS=Salmonella paratyphi A (strain
AKU_12601) GN=yejK PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|A9N6F3|NDPA_SALPB Nucleoid-associated protein YejK OS=Salmonella paratyphi B (strain
ATCC BAA-1250 / SPB7) GN=yejK PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|Q5PE22|NDPA_SALPA Nucleoid-associated protein YejK OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=yejK PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|B4SYR2|NDPA_SALNS Nucleoid-associated protein YejK OS=Salmonella newport (strain
SL254) GN=yejK PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|B4TAQ0|NDPA_SALHS Nucleoid-associated protein YejK OS=Salmonella heidelberg (strain
SL476) GN=yejK PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|B5FNN2|NDPA_SALDC Nucleoid-associated protein YejK OS=Salmonella dublin (strain
CT_02021853) GN=yejK PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|Q57MB2|NDPA_SALCH Nucleoid-associated protein YejK OS=Salmonella choleraesuis (strain
SC-B67) GN=yejK PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|B5EYS8|NDPA_SALA4 Nucleoid-associated protein SeAg_B2375 OS=Salmonella agona (strain
SL483) GN=yejK PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|B4TPC8|NDPA_SALSV Nucleoid-associated protein YejK OS=Salmonella schwarzengrund
(strain CVM19633) GN=yejK PE=3 SV=1
Length = 335
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 RQNIQTFIDDQLNRGNEIS-ESLAIKASAISVIIFSEDYASSRWCLDE 82
RQ + ++ ++QL G EI ESL+ + S +S + FSE A + L+E
Sbjct: 223 RQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEE 270
>sp|Q8KA87|CLPB2_CHLTE Probable chaperone protein ClpB 2 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=clpB2 PE=3 SV=1
Length = 442
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 15 VSCSGEDTCDSFTSHLY--SALSRQNIQTFIDDQ------------LNRGNEISESLAIK 60
+ C G T D + H+ +AL R+ QT I DQ L EI + IK
Sbjct: 311 LRCIGATTLDEYRKHIEKDAALERR-FQTVIVDQPSVEDTVSILRGLKEKYEIHHGVRIK 369
Query: 61 -ASAISVIIFSEDYASSRWCLDELVEILECKKCCARNAESSEPNNYRKIN 109
A+ ++ S Y + R+ D+ +++++ R SEP +IN
Sbjct: 370 DAALVAAAELSNRYIADRFLPDKAIDLIDEACSRLRLEIDSEPEELDRIN 419
>sp|Q54NS8|AIFB_DICDI Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum
GN=aifB PE=3 SV=1
Length = 387
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 24 DSFTSHLYSALSRQNIQTFIDDQLNRGNEISESLAIKASAISVIIFSEDYASSR 77
D FT+ + A+ ++N++ ++D++ +EI +L + ++ ++ I S++Y + +
Sbjct: 185 DKFTNVVSKAMKKRNVEVILNDRITMPDEIKANL-LNQTSPNIQISSQNYTTEK 237
>sp|A8ERT9|SYP_ARCB4 Proline--tRNA ligase OS=Arcobacter butzleri (strain RM4018) GN=proS
PE=3 SV=1
Length = 568
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 12 DIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNRGNEISESLAIKASAISVIIFSE 71
DI VS S ++ LYS L + I T +DD++N K S ++ F
Sbjct: 475 DIIVSNSKKEEEAKVGEELYSKLKQAGISTILDDRIN------ARFGFKMSDFELLGFPY 528
Query: 72 DYASSRWCLDELVEILECK 90
+ D LVEI++ K
Sbjct: 529 AVVIGKKLEDGLVEIVDRK 547
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,951,008
Number of Sequences: 539616
Number of extensions: 1205664
Number of successful extensions: 3436
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 3406
Number of HSP's gapped (non-prelim): 55
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)