Query 045928
Match_columns 116
No_of_seqs 101 out of 1055
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 9.8E-38 3.4E-42 225.4 6.8 107 5-111 3-116 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.3E-36 4.4E-41 223.7 6.1 103 9-111 34-144 (204)
3 3h16_A TIR protein; bacteria T 100.0 3.5E-31 1.2E-35 186.2 4.3 102 9-111 19-127 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 3.8E-25 1.3E-29 154.9 6.8 104 7-112 7-123 (146)
5 1t3g_A X-linked interleukin-1 99.9 4.8E-24 1.6E-28 151.1 4.8 94 9-102 1-110 (159)
6 2js7_A Myeloid differentiation 99.9 1E-23 3.4E-28 149.5 4.7 91 8-100 14-111 (160)
7 1fyx_A TOLL-like receptor 2; b 99.9 2.4E-24 8.2E-29 150.9 -0.2 90 8-99 3-99 (149)
8 2j67_A TOLL like receptor 10; 99.9 1.7E-23 5.7E-28 150.9 2.6 91 7-99 32-129 (178)
9 3j0a_A TOLL-like receptor 5; m 99.7 1.1E-17 3.8E-22 141.2 4.5 90 8-99 668-767 (844)
10 1eiw_A Hypothetical protein MT 98.3 7.7E-07 2.6E-11 59.4 4.4 64 9-89 3-66 (111)
11 3hyn_A Putative signal transdu 96.3 0.0055 1.9E-07 44.1 4.9 64 26-89 33-107 (189)
12 2khz_A C-MYC-responsive protei 85.6 2.8 9.7E-05 28.6 6.5 85 1-90 3-103 (165)
13 2f62_A Nucleoside 2-deoxyribos 82.0 2.8 9.6E-05 28.9 5.2 66 25-90 27-98 (161)
14 3ehd_A Uncharacterized conserv 67.1 23 0.00078 24.3 6.7 76 12-90 6-97 (162)
15 2yvq_A Carbamoyl-phosphate syn 64.0 17 0.00057 24.1 5.4 62 9-73 24-106 (143)
16 2d00_A V-type ATP synthase sub 52.7 21 0.00073 22.7 4.2 61 31-100 15-79 (109)
17 4fyk_A Deoxyribonucleoside 5'- 52.4 38 0.0013 23.0 5.7 80 12-98 4-99 (152)
18 1s2d_A Purine trans deoxyribos 50.9 38 0.0013 23.1 5.6 76 12-90 9-109 (167)
19 3aon_B V-type sodium ATPase su 48.3 8.5 0.00029 25.0 1.8 59 32-99 15-75 (115)
20 1sc3_B Interleukin-1 beta conv 45.9 6.8 0.00023 24.1 0.9 25 14-38 21-45 (88)
21 2pw6_A Uncharacterized protein 43.2 34 0.0012 25.1 4.6 75 24-98 95-170 (271)
22 2ql9_B Caspase-7; cysteine pro 41.1 8.2 0.00028 24.0 0.8 25 14-38 23-47 (97)
23 1bax_A M-PMV MA, M-PMV matrix 40.7 15 0.00052 23.2 2.0 17 25-41 10-26 (94)
24 1qtn_B Caspase-8; apoptosis, d 39.6 7.7 0.00026 24.2 0.5 25 14-38 25-49 (95)
25 2dko_B Caspase-3; low barrier 37.4 10 0.00035 24.0 0.8 25 14-38 29-53 (103)
26 2i4r_A V-type ATP synthase sub 37.0 14 0.00048 23.4 1.4 60 32-100 22-86 (102)
27 1v95_A Nuclear receptor coacti 35.7 42 0.0014 22.3 3.7 47 8-57 6-53 (130)
28 1pyo_B Caspase-2; apoptosis, c 35.7 11 0.00038 23.8 0.8 25 14-38 27-51 (105)
29 1byr_A Protein (endonuclease); 35.5 44 0.0015 21.3 3.8 11 26-36 15-25 (155)
30 1wu7_A Histidyl-tRNA synthetas 35.2 33 0.0011 26.5 3.5 36 10-46 332-367 (434)
31 2jug_A TUBC protein; docking d 35.0 15 0.00052 21.7 1.3 20 27-46 7-26 (78)
32 1evl_A Threonyl-tRNA synthetas 31.8 28 0.00096 26.6 2.6 37 9-46 297-333 (401)
33 1yy3_A S-adenosylmethionine:tR 31.0 15 0.00051 28.5 0.9 74 25-108 187-264 (346)
34 3ikl_A DNA polymerase subunit 30.9 56 0.0019 26.1 4.3 34 21-54 361-398 (459)
35 1egw_A MADS box transcription 29.8 15 0.00051 22.2 0.6 35 58-92 36-70 (77)
36 4h3d_A 3-dehydroquinate dehydr 28.7 29 0.001 25.3 2.2 64 30-94 104-169 (258)
37 2lpy_A Matrix protein P10; GAG 28.4 29 0.00098 23.0 1.8 19 25-43 9-27 (124)
38 2i4l_A Proline-tRNA ligase; al 28.4 25 0.00084 27.6 1.8 37 10-46 365-403 (458)
39 2xzd_B Caspase-3; hydrolase-pr 28.4 19 0.00065 23.4 0.9 25 14-38 28-52 (118)
40 1nj1_A PROR, proline-tRNA synt 27.7 35 0.0012 27.3 2.6 47 9-55 313-364 (501)
41 3rjm_B Caspase-2; caspase-2, c 27.3 13 0.00044 24.2 -0.0 25 14-38 28-52 (117)
42 1qe0_A Histidyl-tRNA synthetas 25.6 32 0.0011 26.3 1.9 37 9-46 328-364 (420)
43 3hsy_A Glutamate receptor 2; l 24.6 99 0.0034 22.6 4.5 57 13-70 124-186 (376)
44 3net_A Histidyl-tRNA synthetas 24.5 37 0.0013 26.7 2.2 37 9-46 370-406 (465)
45 4g84_A Histidine--tRNA ligase, 24.1 81 0.0028 24.2 4.1 35 9-44 365-399 (464)
46 1f8y_A Nucleoside 2-deoxyribos 24.0 92 0.0032 20.9 3.9 76 12-90 5-106 (157)
47 3o21_A Glutamate receptor 3; p 23.5 1.4E+02 0.0047 22.1 5.1 57 13-70 133-192 (389)
48 4g85_A Histidine-tRNA ligase, 23.0 1E+02 0.0035 24.3 4.5 35 9-44 418-452 (517)
49 3p57_A Myocyte-specific enhanc 22.9 27 0.00094 21.8 0.9 35 58-92 36-70 (90)
50 3kg2_A Glutamate receptor 2; I 22.6 1.5E+02 0.0052 24.1 5.6 57 13-70 124-186 (823)
51 1htt_A Histidyl-tRNA synthetas 20.2 42 0.0014 25.6 1.6 37 9-46 326-364 (423)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=9.8e-38 Score=225.42 Aligned_cols=107 Identities=42% Similarity=0.695 Sum_probs=89.2
Q ss_pred CCCCceecEEEeceeccCccchHHHHHHHHhcCCeeeeecCC-CCCCcccchhh--cccccceEEEEeecCCccchhhHH
Q 045928 5 SGNNKKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQ-LNRGNEISESL--AIKASAISVIIFSEDYASSRWCLD 81 (116)
Q Consensus 5 ~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~-l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~~ 81 (116)
||.+++|||||||+++|++++|++||+.+|+++||++|+|++ +++|+.+.+.| +|++|+++|+|+|+||++|+||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 446789999999999999989999999999999999999977 99999999988 999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCEEEe----cCCcccccccCC
Q 045928 82 ELVEILECKKCCARNAES----SEPNNYRKINDT 111 (116)
Q Consensus 82 El~~il~~~~~~~~~v~P----v~p~~vr~~~~~ 111 (116)
||.+|++|.++.+++|+| |+|++||+|+|.
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~ 116 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGV 116 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTH
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCc
Confidence 999999999999999999 899999999984
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.3e-36 Score=223.74 Aligned_cols=103 Identities=41% Similarity=0.647 Sum_probs=98.6
Q ss_pred ceecEEEeceeccCccchHHHHHHHHhcCCeeeeecCC-CCCCcccchhh--cccccceEEEEeecCCccchhhHHHHHH
Q 045928 9 KKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQ-LNRGNEISESL--AIKASAISVIIFSEDYASSRWCLDELVE 85 (116)
Q Consensus 9 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~-l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~~El~~ 85 (116)
++|||||||+++|++++|++||+.+|+++||++|+|++ +++|+.+.+.| +|++|+++|+|||+||++|+||++||.+
T Consensus 34 ~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~ 113 (204)
T 3ozi_A 34 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAE 113 (204)
T ss_dssp CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHH
T ss_pred cCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHH
Confidence 89999999999999999999999999999999999977 99999999988 9999999999999999999999999999
Q ss_pred HHHhhhc-CCCEEEe----cCCcccccccCC
Q 045928 86 ILECKKC-CARNAES----SEPNNYRKINDT 111 (116)
Q Consensus 86 il~~~~~-~~~~v~P----v~p~~vr~~~~~ 111 (116)
|++|.++ .+++|+| |+|++||+|+|.
T Consensus 114 I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~ 144 (204)
T 3ozi_A 114 IVRRQEEDPRRIILPIFYMVDPSDVRHQTGC 144 (204)
T ss_dssp HHHHHHHCTTSEECCEEESSCHHHHHHTCTT
T ss_pred HHHHHHhcCCeeeEEEEeecCHHHHHhcccc
Confidence 9999875 5899999 999999999985
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=3.5e-31 Score=186.20 Aligned_cols=102 Identities=20% Similarity=0.341 Sum_probs=96.4
Q ss_pred ceecEEEeceeccCccchHHHHHHHHhcCCeeeeecCC-CCCCcccchhh--cccccceEEEEeecCCccchhhHHHHHH
Q 045928 9 KKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQ-LNRGNEISESL--AIKASAISVIIFSEDYASSRWCLDELVE 85 (116)
Q Consensus 9 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~-l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~~El~~ 85 (116)
++|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.+.+.| +|++|+++|+|+|++|++|.||++||..
T Consensus 19 ~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~ 97 (154)
T 3h16_A 19 PPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDG 97 (154)
T ss_dssp CSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHH
T ss_pred CCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHH
Confidence 8899999999999 457999999999999999999997 99999999998 9999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEe----cCCcccccccCC
Q 045928 86 ILECKKCCARNAES----SEPNNYRKINDT 111 (116)
Q Consensus 86 il~~~~~~~~~v~P----v~p~~vr~~~~~ 111 (116)
++++..+.+++|+| |+|++||+|+|.
T Consensus 98 ~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~ 127 (154)
T 3h16_A 98 LFQLESSGRSRILPIWHKVSKDEVASFSPT 127 (154)
T ss_dssp HTCCCTTSCCCEEEEEESCCTGGGTTTCCC
T ss_pred HHHHHhcCCCEEEEEEecCCHHHHhhCCcc
Confidence 99988777889999 799999999874
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.91 E-value=3.8e-25 Score=154.88 Aligned_cols=104 Identities=21% Similarity=0.335 Sum_probs=73.9
Q ss_pred CCceecEEEeceeccCccchHHHHHHHHhc--CCeeeeecCC-CCCCcccchhh--cccccceEEEEeecCCccchhhHH
Q 045928 7 NNKKYDIFVSCSGEDTCDSFTSHLYSALSR--QNIQTFIDDQ-LNRGNEISESL--AIKASAISVIIFSEDYASSRWCLD 81 (116)
Q Consensus 7 ~~~~~dVFISy~~~D~~~~fv~~L~~~L~~--~gi~vf~D~~-l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~~ 81 (116)
..+.|||||||+++|. .|+.+|..+|+. +|+++|++++ +.+|+.+.+.| +|++|+.+|+|+|+||++|.||+.
T Consensus 7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 3479999999999996 479999999998 6999999887 99999999988 999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCEEEe----cC----CcccccccCCc
Q 045928 82 ELVEILECKKCCARNAES----SE----PNNYRKINDTR 112 (116)
Q Consensus 82 El~~il~~~~~~~~~v~P----v~----p~~vr~~~~~~ 112 (116)
|+..|+.+.......|+| |+ |..+|.++.-+
T Consensus 85 El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id 123 (146)
T 3ub2_A 85 QMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVD 123 (146)
T ss_dssp HHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEE
T ss_pred HHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeee
Confidence 999999987433336679 33 55556655433
No 5
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.89 E-value=4.8e-24 Score=151.07 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=82.4
Q ss_pred ceecEEEeceeccC---------ccchHHHHHH-HHh-cCCeeeeecCC-CCCCcccchhh--cccccceEEEEeecCCc
Q 045928 9 KKYDIFVSCSGEDT---------CDSFTSHLYS-ALS-RQNIQTFIDDQ-LNRGNEISESL--AIKASAISVIIFSEDYA 74 (116)
Q Consensus 9 ~~~dVFISy~~~D~---------~~~fv~~L~~-~L~-~~gi~vf~D~~-l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~ 74 (116)
+.|||||||+++|. +..|+.+|.. .|+ ++|+++|++++ +.+|+.+.+.| +|++|+..|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 3579998665 699 79999999887 99999999988 99999999999999997
Q ss_pred -cchhhHHHHHHHHHhh-hcCCCEEEecCC
Q 045928 75 -SSRWCLDELVEILECK-KCCARNAESSEP 102 (116)
Q Consensus 75 -~S~wc~~El~~il~~~-~~~~~~v~Pv~p 102 (116)
.|.||+.|+..++.+. .+.+..|+||..
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~ 110 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIEC 110 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEEC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 9999999999999886 556789999643
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.88 E-value=1e-23 Score=149.54 Aligned_cols=91 Identities=16% Similarity=0.266 Sum_probs=81.1
Q ss_pred CceecEEEeceeccCccchHHHHHHHHhcC--CeeeeecCC-CCCCcccchhh--ccc-ccceEEEEeecCCccchhhHH
Q 045928 8 NKKYDIFVSCSGEDTCDSFTSHLYSALSRQ--NIQTFIDDQ-LNRGNEISESL--AIK-ASAISVIIFSEDYASSRWCLD 81 (116)
Q Consensus 8 ~~~~dVFISy~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~-l~~G~~~~~~i--~I~-~s~~~Iiv~S~~~~~S~wc~~ 81 (116)
.+.|||||||+++|. +|+.+|...|+++ |+++|+|++ +.+|+.+.+.| +|+ +|+.+|+|+|+||++|.||+.
T Consensus 14 ~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~ 91 (160)
T 2js7_A 14 PERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF 91 (160)
T ss_dssp TTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred CcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence 588999999999994 7999999999974 699999887 99999999888 998 799999999999999999999
Q ss_pred HHHHHHHhh-hcCCCEEEec
Q 045928 82 ELVEILECK-KCCARNAESS 100 (116)
Q Consensus 82 El~~il~~~-~~~~~~v~Pv 100 (116)
|+..|+++. ++.+.+|+||
T Consensus 92 El~~a~~~~~~~~~~~vIpV 111 (160)
T 2js7_A 92 QTKFALSLSPGAHQKRLIPI 111 (160)
T ss_dssp HHHHHHHHCTTHHHHTEEEE
T ss_pred HHHHHHHHHHccCCCEEEEE
Confidence 999999875 3345678884
No 7
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.88 E-value=2.4e-24 Score=150.92 Aligned_cols=90 Identities=23% Similarity=0.293 Sum_probs=80.1
Q ss_pred CceecEEEeceeccCccchHHH-HHHHHhcC--CeeeeecCC-CCCCcccchhh--cccccceEEEEeecCCccchhhHH
Q 045928 8 NKKYDIFVSCSGEDTCDSFTSH-LYSALSRQ--NIQTFIDDQ-LNRGNEISESL--AIKASAISVIIFSEDYASSRWCLD 81 (116)
Q Consensus 8 ~~~~dVFISy~~~D~~~~fv~~-L~~~L~~~--gi~vf~D~~-l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~~ 81 (116)
.+.|||||||+++|. .|+.+ |...|+++ |+++|+|++ +.+|+.+.+.| +|++|++.|+|+|+||++|.||+.
T Consensus 3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~ 80 (149)
T 1fyx_A 3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKY 80 (149)
T ss_dssp SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHH
Confidence 478999999999996 69996 99999976 999999987 99999999998 999999999999999999999999
Q ss_pred HHHHHHHhh-hcCCCEEEe
Q 045928 82 ELVEILECK-KCCARNAES 99 (116)
Q Consensus 82 El~~il~~~-~~~~~~v~P 99 (116)
|+..|+.+. ++.+..|+|
T Consensus 81 El~~a~~~~~~~~~~~vIp 99 (149)
T 1fyx_A 81 ELDFSHFRLFDENNDAAIL 99 (149)
T ss_dssp HSCCSCCTTCGGGTTCCEE
T ss_pred HHHHHHHHHHhcCCCEEEE
Confidence 999988543 345566777
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.87 E-value=1.7e-23 Score=150.86 Aligned_cols=91 Identities=21% Similarity=0.371 Sum_probs=77.7
Q ss_pred CCceecEEEeceeccCccchHHH-HHHHHhc--CCeeeeecCC-CCCCcccchhh--cccccceEEEEeecCCccchhhH
Q 045928 7 NNKKYDIFVSCSGEDTCDSFTSH-LYSALSR--QNIQTFIDDQ-LNRGNEISESL--AIKASAISVIIFSEDYASSRWCL 80 (116)
Q Consensus 7 ~~~~~dVFISy~~~D~~~~fv~~-L~~~L~~--~gi~vf~D~~-l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~ 80 (116)
..+.|||||||+++|. +|+.. |...|++ +|+++|+|++ +.+|+.+.+.| +|++|+..|+|+|+||++|.||+
T Consensus 32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 3478999999999995 69985 9999998 8999999887 99999999998 99999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCCEEEe
Q 045928 81 DELVEILECK-KCCARNAES 99 (116)
Q Consensus 81 ~El~~il~~~-~~~~~~v~P 99 (116)
.|+..|+.+. ++.+.+|+|
T Consensus 110 ~El~~a~~~~~~~~~~~vIp 129 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIIL 129 (178)
T ss_dssp THHHHTTCC-------CEEE
T ss_pred HHHHHHHHHHHhcCCCEEEE
Confidence 9999998654 345677888
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=141.19 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=80.1
Q ss_pred CceecEEEeceeccCccchH-HHHHHHHhc-----CCeeeeecCC-CCCCcccchhh--cccccceEEEEeecCCccchh
Q 045928 8 NKKYDIFVSCSGEDTCDSFT-SHLYSALSR-----QNIQTFIDDQ-LNRGNEISESL--AIKASAISVIIFSEDYASSRW 78 (116)
Q Consensus 8 ~~~~dVFISy~~~D~~~~fv-~~L~~~L~~-----~gi~vf~D~~-l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~w 78 (116)
.++|||||||+++|. .|| .+|...|+. +|+++|++++ +.+|+.+.+.| +|++|+..|+|+|++|+.|+|
T Consensus 668 ~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~w 745 (844)
T 3j0a_A 668 MYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGW 745 (844)
T ss_dssp CCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTS
T ss_pred ceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChH
Confidence 479999999999995 577 579999984 6899999988 99999999998 999999999999999999999
Q ss_pred hHHHHHHHHHhh-hcCCCEEEe
Q 045928 79 CLDELVEILECK-KCCARNAES 99 (116)
Q Consensus 79 c~~El~~il~~~-~~~~~~v~P 99 (116)
|..|+..|+.+. ++.+.+|+|
T Consensus 746 c~~e~~~a~~~~~~~~~~~~i~ 767 (844)
T 3j0a_A 746 CLEAFSYAQGRCLSDLNSALIM 767 (844)
T ss_dssp TTHHHHHHHSCCCCSSCTTEEE
T ss_pred HHHHHHHHHHHHHHhcCCcEEE
Confidence 999999988776 355667777
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.28 E-value=7.7e-07 Score=59.36 Aligned_cols=64 Identities=3% Similarity=-0.029 Sum_probs=49.6
Q ss_pred ceecEEEeceeccCccchHHHHHHHHhcCCeeeeecCCCCCCcccchhhcccccceEEEEeecCCccchhhHHHHHHHHH
Q 045928 9 KKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNRGNEISESLAIKASAISVIIFSEDYASSRWCLDELVEILE 88 (116)
Q Consensus 9 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~l~~G~~~~~~i~I~~s~~~Iiv~S~~~~~S~wc~~El~~il~ 88 (116)
.+|++||||+.+| . ...|...|.+.|+.. .|. .|+.|.+.|++.++....|+||..|+..+.+
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~-~~~------------~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~ 65 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEW-RPA------------TPEDADAVIVLAGLWGTRRDEILGAVDLARK 65 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCE-EEC------------CSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCee-ecC------------ccccCCEEEEEeCCCcCCChHHHHHHHHHHH
Confidence 5789999999998 3 444555555556644 331 6899999999999999999999999987655
Q ss_pred h
Q 045928 89 C 89 (116)
Q Consensus 89 ~ 89 (116)
.
T Consensus 66 ~ 66 (111)
T 1eiw_A 66 S 66 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.31 E-value=0.0055 Score=44.09 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=44.8
Q ss_pred hHHHHHHHHhcCCeeeeecCC-C----CC----Ccccchhh--cccccceEEEEeecCCccchhhHHHHHHHHHh
Q 045928 26 FTSHLYSALSRQNIQTFIDDQ-L----NR----GNEISESL--AIKASAISVIIFSEDYASSRWCLDELVEILEC 89 (116)
Q Consensus 26 fv~~L~~~L~~~gi~vf~D~~-l----~~----G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~~El~~il~~ 89 (116)
....|..--....+--|.|-+ . .- -..|...+ .|..|+..|+++|++...|.|...|+..+++.
T Consensus 33 yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~ 107 (189)
T 3hyn_A 33 YYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGT 107 (189)
T ss_dssp HHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHh
Confidence 344454444444444566653 2 22 23455566 89999999999999999999999999998833
No 12
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=85.57 E-value=2.8 Score=28.64 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=54.0
Q ss_pred CCCCCCCCceecEEEeceec-cCccc-hHHHHHHHHhcCCeeeeecCCCCC-----Ccc--------cchhh-cccccce
Q 045928 1 MASFSGNNKKYDIFVSCSGE-DTCDS-FTSHLYSALSRQNIQTFIDDQLNR-----GNE--------ISESL-AIKASAI 64 (116)
Q Consensus 1 m~~~~~~~~~~dVFISy~~~-D~~~~-fv~~L~~~L~~~gi~vf~D~~l~~-----G~~--------~~~~i-~I~~s~~ 64 (116)
||..+-++ +..|||+-.-. +.... ....+.+.|+++| .|+.+....+ |.. ....+ .|++|++
T Consensus 3 ~~~~~~~~-~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~ 80 (165)
T 2khz_A 3 MAASGEQA-PCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADV 80 (165)
T ss_dssp CCCCSSCC-CCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSE
T ss_pred cccCCCCC-CeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCE
Confidence 56555444 45699983322 11112 4578999999999 8865433222 211 11123 8999999
Q ss_pred EEEEeecCCccchhhHHHHHHHHHhh
Q 045928 65 SVIIFSEDYASSRWCLDELVEILECK 90 (116)
Q Consensus 65 ~Iiv~S~~~~~S~wc~~El~~il~~~ 90 (116)
.|++++ ..+.=+..|+..+....
T Consensus 81 vva~~~---~~d~Gt~~EiGyA~alg 103 (165)
T 2khz_A 81 VVAEVT---QPSLGVGYELGRAVALG 103 (165)
T ss_dssp EEEECS---SCCHHHHHHHHHHHHTC
T ss_pred EEEECC---CCCCCHHHHHHHHHHCC
Confidence 999997 45778899999876654
No 13
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=81.98 E-value=2.8 Score=28.86 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=46.2
Q ss_pred chHHHHHHHHhcCCeeeeecCC--CCCCcccc-hhh-cccccceEEEEeec--CCccchhhHHHHHHHHHhh
Q 045928 25 SFTSHLYSALSRQNIQTFIDDQ--LNRGNEIS-ESL-AIKASAISVIIFSE--DYASSRWCLDELVEILECK 90 (116)
Q Consensus 25 ~fv~~L~~~L~~~gi~vf~D~~--l~~G~~~~-~~i-~I~~s~~~Iiv~S~--~~~~S~wc~~El~~il~~~ 90 (116)
.+...+.+.|+++|+.|+.-.+ ...++.+. ..+ .|++|++.|++++| .-..++=...|+..+....
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg 98 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN 98 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence 6788999999999998887433 11111221 223 89999999999995 3334556888998876654
No 14
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=67.13 E-value=23 Score=24.29 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=50.9
Q ss_pred cEEEe---ceeccCccchHHHHHHHHhcC--CeeeeecCC--C---CCCcccchhh------cccccceEEEEeecCCcc
Q 045928 12 DIFVS---CSGEDTCDSFTSHLYSALSRQ--NIQTFIDDQ--L---NRGNEISESL------AIKASAISVIIFSEDYAS 75 (116)
Q Consensus 12 dVFIS---y~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~--l---~~G~~~~~~i------~I~~s~~~Iiv~S~~~~~ 75 (116)
.|||. |+..+ ..+..++.++|+++ |+.+|.-.+ . .++..+...| +|++|++.|+++. ....
T Consensus 6 kIYLAGP~Fs~~q--~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~ 82 (162)
T 3ehd_A 6 KIYFAGPLFSQAD--LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTI 82 (162)
T ss_dssp EEEEESCCSSHHH--HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSC
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCC
Confidence 45665 43333 35778899999865 898887433 1 1223333333 7999999999995 3446
Q ss_pred chhhHHHHHHHHHhh
Q 045928 76 SRWCLDELVEILECK 90 (116)
Q Consensus 76 S~wc~~El~~il~~~ 90 (116)
+..+..|+..+....
T Consensus 83 D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 83 DAGVASEIGVAYAKG 97 (162)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCC
Confidence 788999998877654
No 15
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=63.98 E-value=17 Score=24.09 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=39.0
Q ss_pred ceecEEEeceeccCccchHHHHHHHHhcCCeeeeecC-------------C-CCCCccc-c----hhh--cccccceEEE
Q 045928 9 KKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDD-------------Q-LNRGNEI-S----ESL--AIKASAISVI 67 (116)
Q Consensus 9 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~-------------~-l~~G~~~-~----~~i--~I~~s~~~Ii 67 (116)
.+- ||||.+..|+. -+..+...|.+.|+.++--. + +..+..- . +.| .|++-++.++
T Consensus 24 ~~g-vliSv~d~dK~--~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lV 100 (143)
T 2yvq_A 24 QKG-ILIGIQQSFRP--RFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLV 100 (143)
T ss_dssp CSE-EEEECCGGGHH--HHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEE
T ss_pred CCC-EEEEecccchH--HHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEE
Confidence 344 99999887743 35567788888888876211 1 1111100 1 345 7888889888
Q ss_pred EeecCC
Q 045928 68 IFSEDY 73 (116)
Q Consensus 68 v~S~~~ 73 (116)
|..++-
T Consensus 101 Int~~~ 106 (143)
T 2yvq_A 101 INLPNN 106 (143)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 888865
No 16
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=52.67 E-value=21 Score=22.70 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=38.0
Q ss_pred HHHHhcCCeeeeecCCCCCCcccchhh--cccccceEEEEeecCCccchhhHHHHHHHHHhh--hcCCCEEEec
Q 045928 31 YSALSRQNIQTFIDDQLNRGNEISESL--AIKASAISVIIFSEDYASSRWCLDELVEILECK--KCCARNAESS 100 (116)
Q Consensus 31 ~~~L~~~gi~vf~D~~l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~~El~~il~~~--~~~~~~v~Pv 100 (116)
..-|...|+.+|... ..+.+...+ .+++-.+.|++++++.+. ++...++.. +...+.|+++
T Consensus 15 v~GFrLaGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~------~i~~~i~~~~~~~~~P~Il~I 79 (109)
T 2d00_A 15 AQGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP------DPERAVERLMRGRDLPVLLPI 79 (109)
T ss_dssp HHHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS------CHHHHHHHHTTCCCCCEEEEE
T ss_pred HHHHHHcCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH------hhHHHHHHHHhCCCCeEEEEE
Confidence 345667898887542 223444455 455668999999999887 333333333 2446788774
No 17
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=52.43 E-value=38 Score=23.01 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=48.7
Q ss_pred cEEEe--ceeccCccchHHHHHHHHhcCCeeeeecCCC-----CCCcc-------cc-hhh-cccccceEEEEeecCCcc
Q 045928 12 DIFVS--CSGEDTCDSFTSHLYSALSRQNIQTFIDDQL-----NRGNE-------IS-ESL-AIKASAISVIIFSEDYAS 75 (116)
Q Consensus 12 dVFIS--y~~~D~~~~fv~~L~~~L~~~gi~vf~D~~l-----~~G~~-------~~-~~i-~I~~s~~~Iiv~S~~~~~ 75 (116)
.|||+ +++.+....+...+.+.|++.| .|+-..-. ..|+. +. ..+ .|++|++.|++++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46776 2232222257789999999999 67542111 12221 11 123 8999999999998 45
Q ss_pred chhhHHHHHHHHHhhhcCCCEEE
Q 045928 76 SRWCLDELVEILECKKCCARNAE 98 (116)
Q Consensus 76 S~wc~~El~~il~~~~~~~~~v~ 98 (116)
|.=...|+..+.... .+++.
T Consensus 80 d~Gt~~EiG~A~alg---kPV~~ 99 (152)
T 4fyk_A 80 SLGVGYELGRAVALG---KPILC 99 (152)
T ss_dssp CHHHHHHHHHHHHTT---CCEEE
T ss_pred CCCHHHHHHHHHHcC---CeEEE
Confidence 777888998877654 35554
No 18
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=50.92 E-value=38 Score=23.09 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=50.4
Q ss_pred cEEEe---ceeccCccchHHHHHHHHhcC--CeeeeecCC--C--------CCC----cccchh-----h-cccccceEE
Q 045928 12 DIFVS---CSGEDTCDSFTSHLYSALSRQ--NIQTFIDDQ--L--------NRG----NEISES-----L-AIKASAISV 66 (116)
Q Consensus 12 dVFIS---y~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~--l--------~~G----~~~~~~-----i-~I~~s~~~I 66 (116)
.|||. |+..+ .....++.+.|+++ |+.+|.-.+ . ..| ..+... + .|++|++.|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 47776 33332 35788999999999 888876433 2 111 112222 3 899999999
Q ss_pred EEeecCCccchhhHHHHHHHHHhh
Q 045928 67 IIFSEDYASSRWCLDELVEILECK 90 (116)
Q Consensus 67 iv~S~~~~~S~wc~~El~~il~~~ 90 (116)
+++...-. +.=+..|+..+....
T Consensus 87 A~ldg~~~-D~GTa~EiGyA~alg 109 (167)
T 1s2d_A 87 FLYDMDQL-DDGSAFXIGFMRAMH 109 (167)
T ss_dssp EEEESSSC-CHHHHHHHHHHHHTT
T ss_pred EECCCCCC-CCCceeehhhHhhCC
Confidence 99986544 566788898776654
No 19
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=48.29 E-value=8.5 Score=24.98 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=36.2
Q ss_pred HHHhcCCeeeeecCCCCCCcccchhh--cccccceEEEEeecCCccchhhHHHHHHHHHhhhcCCCEEEe
Q 045928 32 SALSRQNIQTFIDDQLNRGNEISESL--AIKASAISVIIFSEDYASSRWCLDELVEILECKKCCARNAES 99 (116)
Q Consensus 32 ~~L~~~gi~vf~D~~l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~~El~~il~~~~~~~~~v~P 99 (116)
--|...|+.+|...+ -+.+...+ .+++ .+.|++++++.+.. +.+++.+ ++ +...+.|++
T Consensus 15 ~GFrLaGie~~~v~~---~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~-~~--~~~~P~Ive 75 (115)
T 3aon_B 15 SPFRLFGFDVQHGTT---KTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER-YK--GQLTPAIIL 75 (115)
T ss_dssp GGGGGGTCEEECCCS---HHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH-HH--TSSSCEEEE
T ss_pred HHHHHcCCeEEEeCC---HHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH-Hh--CCCCCEEEE
Confidence 345667888875422 23444445 4556 99999999997752 4444444 22 334677766
No 20
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=45.94 E-value=6.8 Score=24.12 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=18.9
Q ss_pred EEeceeccCccchHHHHHHHHhcCC
Q 045928 14 FVSCSGEDTCDSFTSHLYSALSRQN 38 (116)
Q Consensus 14 FISy~~~D~~~~fv~~L~~~L~~~g 38 (116)
|.|||+...+.-|+..|.+.|++++
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 5677777666669999999998654
No 21
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=43.23 E-value=34 Score=25.12 Aligned_cols=75 Identities=11% Similarity=-0.038 Sum_probs=49.2
Q ss_pred cchHHHHHHHHhcCCeeeeecCC-CCCCcccchhhcccccceEEEEeecCCccchhhHHHHHHHHHhhhcCCCEEE
Q 045928 24 DSFTSHLYSALSRQNIQTFIDDQ-LNRGNEISESLAIKASAISVIIFSEDYASSRWCLDELVEILECKKCCARNAE 98 (116)
Q Consensus 24 ~~fv~~L~~~L~~~gi~vf~D~~-l~~G~~~~~~i~I~~s~~~Iiv~S~~~~~S~wc~~El~~il~~~~~~~~~v~ 98 (116)
..++.++.+.|.+.|+.+-..+. +-.|.-..-...-.+.++=|+-+|-+...+.--..+|.+++...++.+-.|+
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vPL~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd~~VlIi 170 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLV 170 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGGGTEEEE
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhhHHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCcEEE
Confidence 47999999999999997643222 4444221111133456677888888876677666799999987765544444
No 22
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=41.10 E-value=8.2 Score=24.02 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=17.1
Q ss_pred EEeceeccCccchHHHHHHHHhcCC
Q 045928 14 FVSCSGEDTCDSFTSHLYSALSRQN 38 (116)
Q Consensus 14 FISy~~~D~~~~fv~~L~~~L~~~g 38 (116)
|.|||+.+.+.-|+..|.+.|+++|
T Consensus 23 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 23 YYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEeeecCCCCCeeHHHHHHHHHHhC
Confidence 4455555555568888999888654
No 23
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=40.72 E-value=15 Score=23.24 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=16.2
Q ss_pred chHHHHHHHHhcCCeee
Q 045928 25 SFTSHLYSALSRQNIQT 41 (116)
Q Consensus 25 ~fv~~L~~~L~~~gi~v 41 (116)
.|+..|...|..+||+|
T Consensus 10 ~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 10 RYVEQLKQALKTRGVKV 26 (94)
T ss_pred HHHHHHHHHHHHcCeee
Confidence 69999999999999999
No 24
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=39.57 E-value=7.7 Score=24.15 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=15.9
Q ss_pred EEeceeccCccchHHHHHHHHhcCC
Q 045928 14 FVSCSGEDTCDSFTSHLYSALSRQN 38 (116)
Q Consensus 14 FISy~~~D~~~~fv~~L~~~L~~~g 38 (116)
|.|||+.+.+.-|+..|.+.|+++|
T Consensus 25 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 25 CVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred cEEEecCCCCcHHHHHHHHHHHHhC
Confidence 3444555555558888888887643
No 25
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=37.39 E-value=10 Score=23.95 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=16.5
Q ss_pred EEeceeccCccchHHHHHHHHhcCC
Q 045928 14 FVSCSGEDTCDSFTSHLYSALSRQN 38 (116)
Q Consensus 14 FISy~~~D~~~~fv~~L~~~L~~~g 38 (116)
|.|||+...+.=|+..|.+.|+++|
T Consensus 29 ~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 29 YYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 4445555545558888999887654
No 26
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=36.97 E-value=14 Score=23.42 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=37.9
Q ss_pred HHHhcCCeeeee-cCCCCCCcccchhh--cccccceEEEEeecCCccchhhHHHHHHHHHhhhc--CCCEEEec
Q 045928 32 SALSRQNIQTFI-DDQLNRGNEISESL--AIKASAISVIIFSEDYASSRWCLDELVEILECKKC--CARNAESS 100 (116)
Q Consensus 32 ~~L~~~gi~vf~-D~~l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~~El~~il~~~~~--~~~~v~Pv 100 (116)
--|...|+..+. .. .-+.+...+ .+++-.+.|++++++.+. ++...++..+. ..+.|+++
T Consensus 22 ~GFrLaGi~~~~~~~---~~ee~~~~~~~l~~~~digIIlIte~ia~------~i~~~i~~~~~~~~~P~IieI 86 (102)
T 2i4r_A 22 IGFMLAGISDIYEVT---SDEEIVKAVEDVLKRDDVGVVIMKQEYLK------KLPPVLRREIDEKVEPTFVSV 86 (102)
T ss_dssp HHHHHTTCCCEEECC---SHHHHHHHHHHHHHCSSEEEEEEEGGGST------TSCHHHHTTTTTCCSSEEEEE
T ss_pred HHHHHcCCCcccCCC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH------HHHHHHHHHHhCCCccEEEEE
Confidence 455667887666 22 123444455 456678999999999875 55555555444 56777763
No 27
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=35.67 E-value=42 Score=22.25 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=30.7
Q ss_pred CceecE-EEeceeccCccchHHHHHHHHhcCCeeeeecCCCCCCcccchhh
Q 045928 8 NKKYDI-FVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNRGNEISESL 57 (116)
Q Consensus 8 ~~~~dV-FISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~l~~G~~~~~~i 57 (116)
....+| .|.-+.+ ...++..+...|...|+++=+|.. .+++.+...|
T Consensus 6 ~~P~Qv~IlpVs~~--~~~YA~~V~~~L~~~GiRvevD~~-r~~e~Lg~kI 53 (130)
T 1v95_A 6 SGPVDCSVIVVNKQ--TKDYAESVGRKVRDLGMVVDLIFL-NTEVSLSQAL 53 (130)
T ss_dssp CCCCTEEEEESSSG--GGHHHHHHHHHHHTTTCCEEEEEC-TTSSCHHHHH
T ss_pred CCCCeEEEEEeCcc--hHHHHHHHHHHHHHCCCEEEEecC-CCCCcHHHHH
Confidence 344454 4445432 347999999999999999977631 2256666655
No 28
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=35.67 E-value=11 Score=23.83 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=17.2
Q ss_pred EEeceeccCccchHHHHHHHHhcCC
Q 045928 14 FVSCSGEDTCDSFTSHLYSALSRQN 38 (116)
Q Consensus 14 FISy~~~D~~~~fv~~L~~~L~~~g 38 (116)
|.|||+...+.=|+..|.+.|++++
T Consensus 27 ~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 27 TAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHC
Confidence 4455565555568999999997644
No 29
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=35.51 E-value=44 Score=21.27 Aligned_cols=11 Identities=18% Similarity=0.126 Sum_probs=5.4
Q ss_pred hHHHHHHHHhc
Q 045928 26 FTSHLYSALSR 36 (116)
Q Consensus 26 fv~~L~~~L~~ 36 (116)
+...+.+.+..
T Consensus 15 ~~~~~~~~i~~ 25 (155)
T 1byr_A 15 ARVLVLSAIDS 25 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 30
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=35.19 E-value=33 Score=26.48 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=27.1
Q ss_pred eecEEEeceeccCccchHHHHHHHHhcCCeeeeecCC
Q 045928 10 KYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQ 46 (116)
Q Consensus 10 ~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~ 46 (116)
.+||+|-.-+++. ...+..+++.|.+.|++|-+|..
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~ 367 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM 367 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC
Confidence 4788865544443 35678999999999999988754
No 31
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=35.02 E-value=15 Score=21.74 Aligned_cols=20 Identities=5% Similarity=0.293 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCeeeeecCC
Q 045928 27 TSHLYSALSRQNIQTFIDDQ 46 (116)
Q Consensus 27 v~~L~~~L~~~gi~vf~D~~ 46 (116)
+..|...|..+||..|.|.+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~ 26 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGE 26 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEECC
Confidence 44677899999999999976
No 32
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=31.76 E-value=28 Score=26.60 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=27.9
Q ss_pred ceecEEEeceeccCccchHHHHHHHHhcCCeeeeecCC
Q 045928 9 KKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQ 46 (116)
Q Consensus 9 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~ 46 (116)
..++|+|---+++ ....+..|+..|++.|++|-+|..
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~ 333 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR 333 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC
Confidence 3478887654443 346788999999999999988864
No 33
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=30.98 E-value=15 Score=28.54 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=42.8
Q ss_pred chHHHHHHHHhcCCeee-eecCCCCCCcccchhh-cccccceEEEEeecCCccchhh--HHHHHHHHHhhhcCCCEEEec
Q 045928 25 SFTSHLYSALSRQNIQT-FIDDQLNRGNEISESL-AIKASAISVIIFSEDYASSRWC--LDELVEILECKKCCARNAESS 100 (116)
Q Consensus 25 ~fv~~L~~~L~~~gi~v-f~D~~l~~G~~~~~~i-~I~~s~~~Iiv~S~~~~~S~wc--~~El~~il~~~~~~~~~v~Pv 100 (116)
.|...|.+.|+.+|+.+ ++--+.-.|....-.. .|++-+. .|+|+ .+|...+++..+..|.+|+.|
T Consensus 187 HFt~eLl~~L~~kGv~~a~vTLHVG~GTF~PV~~e~i~~H~M----------HsE~~~V~~~ta~~in~aka~G~RViAV 256 (346)
T 1yy3_A 187 HFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM----------HAEFYQMSEETAAALNKVRENGGRIISV 256 (346)
T ss_dssp CCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------C----------CCEEEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCHHHHHHHHHCCCeEEEEEEeecCCCCCCccccccccCCc----------ccEEEEECHHHHHHHHHHHHcCCeEEEE
Confidence 68889999999999875 3322222332211111 3333332 24444 368888888888888899997
Q ss_pred CCcccccc
Q 045928 101 EPNNYRKI 108 (116)
Q Consensus 101 ~p~~vr~~ 108 (116)
...-+|.+
T Consensus 257 GTTsvR~L 264 (346)
T 1yy3_A 257 GTTSTRTL 264 (346)
T ss_dssp CTTTHHHH
T ss_pred ecchHHHH
Confidence 76666653
No 34
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=30.94 E-value=56 Score=26.11 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=24.7
Q ss_pred cCccchHHHHHHHHhcCCeeee--ecCC--CCCCcccc
Q 045928 21 DTCDSFTSHLYSALSRQNIQTF--IDDQ--LNRGNEIS 54 (116)
Q Consensus 21 D~~~~fv~~L~~~L~~~gi~vf--~D~~--l~~G~~~~ 54 (116)
|.....+..|++.|++.||+|. +|++ -..|..+.
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK~r 398 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYS 398 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHHHH
Confidence 4345788899999999999998 6653 44554444
No 35
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=29.76 E-value=15 Score=22.23 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=24.3
Q ss_pred cccccceEEEEeecCCccchhhHHHHHHHHHhhhc
Q 045928 58 AIKASAISVIIFSEDYASSRWCLDELVEILECKKC 92 (116)
Q Consensus 58 ~I~~s~~~Iiv~S~~~~~S~wc~~El~~il~~~~~ 92 (116)
.+=++.++++|+|++=--..||-..+..++++...
T Consensus 36 vLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~ 70 (77)
T 1egw_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE 70 (77)
T ss_dssp HHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred cccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHh
Confidence 45678899999999855555665566666666543
No 36
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=28.74 E-value=29 Score=25.27 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHHhcCCeeeeecCCCCCCcccchhh--cccccceEEEEeecCCccchhhHHHHHHHHHhhhcCC
Q 045928 30 LYSALSRQNIQTFIDDQLNRGNEISESL--AIKASAISVIIFSEDYASSRWCLDELVEILECKKCCA 94 (116)
Q Consensus 30 L~~~L~~~gi~vf~D~~l~~G~~~~~~i--~I~~s~~~Iiv~S~~~~~S~wc~~El~~il~~~~~~~ 94 (116)
|...+...|.-=++|-++..++.....+ ..+...+.|| .|-|-.+..+-.+|+...+......+
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI-~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVI-ISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEE-EEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEE-EEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 3344444454335666544444443333 3344444554 55554445566788888888777655
No 37
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=28.43 E-value=29 Score=23.03 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=16.6
Q ss_pred chHHHHHHHHhcCCeeeee
Q 045928 25 SFTSHLYSALSRQNIQTFI 43 (116)
Q Consensus 25 ~fv~~L~~~L~~~gi~vf~ 43 (116)
.|++.|...|.++|++|-.
T Consensus 9 ~fi~~Lk~~LK~rGvkV~~ 27 (124)
T 2lpy_A 9 RYVEQLKQALKTRGVKVKY 27 (124)
T ss_dssp HHHHHHHHHHHTTTCCCCH
T ss_pred HHHHHHHHHHHHCCeeecH
Confidence 6899999999999999833
No 38
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=28.40 E-value=25 Score=27.62 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=26.6
Q ss_pred eecEEEecee--ccCccchHHHHHHHHhcCCeeeeecCC
Q 045928 10 KYDIFVSCSG--EDTCDSFTSHLYSALSRQNIQTFIDDQ 46 (116)
Q Consensus 10 ~~dVFISy~~--~D~~~~fv~~L~~~L~~~gi~vf~D~~ 46 (116)
.++|+|---+ .+.....+..|++.|++.|+.|-+|..
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~ 403 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDT 403 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECC
Confidence 4678775322 122346788999999999999999875
No 39
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=28.38 E-value=19 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=17.4
Q ss_pred EEeceeccCccchHHHHHHHHhcCC
Q 045928 14 FVSCSGEDTCDSFTSHLYSALSRQN 38 (116)
Q Consensus 14 FISy~~~D~~~~fv~~L~~~L~~~g 38 (116)
|.|||....+.=|+..|.+.|++.+
T Consensus 28 ~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 28 YYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEeCCCCCccHHHHHHHHHHhC
Confidence 4556665555568999999997644
No 40
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=27.68 E-value=35 Score=27.28 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=31.9
Q ss_pred ceecEEEece-e-cc--CccchHHHHHHHHhcCCeeeeecCC-CCCCcccch
Q 045928 9 KKYDIFVSCS-G-ED--TCDSFTSHLYSALSRQNIQTFIDDQ-LNRGNEISE 55 (116)
Q Consensus 9 ~~~dVFISy~-~-~D--~~~~fv~~L~~~L~~~gi~vf~D~~-l~~G~~~~~ 55 (116)
..++|+|--- + ++ .....+..|++.|++.|++|-+|.+ -..|..+..
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~~~ 364 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYE 364 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHH
Confidence 3467776543 2 21 2346788999999999999999875 455555543
No 41
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=27.25 E-value=13 Score=24.16 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=16.7
Q ss_pred EEeceeccCccchHHHHHHHHhcCC
Q 045928 14 FVSCSGEDTCDSFTSHLYSALSRQN 38 (116)
Q Consensus 14 FISy~~~D~~~~fv~~L~~~L~~~g 38 (116)
|+|||....+.-|+..|.+.|++.+
T Consensus 28 yvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 28 TAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp CCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred eECeeecCCCChHHHHHHHHHHHhC
Confidence 4445554445568889999997654
No 42
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=25.59 E-value=32 Score=26.25 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=26.9
Q ss_pred ceecEEEeceeccCccchHHHHHHHHhcCCeeeeecCC
Q 045928 9 KKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQ 46 (116)
Q Consensus 9 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~ 46 (116)
..++|+|-.-+++. ...+..++..|.+.|++|-+|..
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~ 364 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL 364 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC
Confidence 34788776444332 35678899999999999988863
No 43
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=24.58 E-value=99 Score=22.60 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=24.8
Q ss_pred EEEeceeccCccchHHHHHHHHhcCCeeeeecCC--CCC---Ccccchhh-cccccceEEEEee
Q 045928 13 IFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQ--LNR---GNEISESL-AIKASAISVIIFS 70 (116)
Q Consensus 13 VFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~--l~~---G~~~~~~i-~I~~s~~~Iiv~S 70 (116)
|.|=| ..|........+.+.|.++|+.+-.... +.+ ...+...+ .|+++..-++++.
T Consensus 124 vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~ 186 (376)
T 3hsy_A 124 FAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD 186 (376)
T ss_dssp EEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEE
T ss_pred EEEEE-eCchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEE
Confidence 44445 3444556788899999988987654332 221 24566666 7776655444443
No 44
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=24.47 E-value=37 Score=26.68 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=28.2
Q ss_pred ceecEEEeceeccCccchHHHHHHHHhcCCeeeeecCC
Q 045928 9 KKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQ 46 (116)
Q Consensus 9 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~ 46 (116)
...||+|-.-+++. ...+..+...|+++|++|-+|..
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~ 406 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE 406 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC
Confidence 45799976655543 35788999999999999988754
No 45
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=24.11 E-value=81 Score=24.21 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=27.0
Q ss_pred ceecEEEeceeccCccchHHHHHHHHhcCCeeeeec
Q 045928 9 KKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFID 44 (116)
Q Consensus 9 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D 44 (116)
...||++...+++.. ..+..|...|.++||++-+|
T Consensus 365 ~~~~v~v~~~~~~~~-~~a~~l~~~Lr~~Gi~ve~~ 399 (464)
T 4g84_A 365 TETQVLVASAQKKLL-EERLKLVSELWDAGIKAELL 399 (464)
T ss_dssp CCCCEEEECSSSSCH-HHHHHHHHHHHHTTCCEECC
T ss_pred ccceEEEEeCCHHHH-HHHHHHHHHHHHCCCcEEEE
Confidence 567899987665543 45778999999999998665
No 46
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=24.04 E-value=92 Score=20.86 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=48.3
Q ss_pred cEEEe---ceeccCccchHHHHHHHHhcCCe----eeeecCC--C--------CCC---cccchh-----h-cccccceE
Q 045928 12 DIFVS---CSGEDTCDSFTSHLYSALSRQNI----QTFIDDQ--L--------NRG---NEISES-----L-AIKASAIS 65 (116)
Q Consensus 12 dVFIS---y~~~D~~~~fv~~L~~~L~~~gi----~vf~D~~--l--------~~G---~~~~~~-----i-~I~~s~~~ 65 (116)
.|||. |+..+ .....++.+.|+.+|. .+|.-.+ . ..+ ..+... + +|++|++.
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 46776 43332 3578899999999985 6665433 1 111 111222 2 89999999
Q ss_pred EEEeecCCccchhhHHHHHHHHHhh
Q 045928 66 VIIFSEDYASSRWCLDELVEILECK 90 (116)
Q Consensus 66 Iiv~S~~~~~S~wc~~El~~il~~~ 90 (116)
|+++...- .+.=+..|+..+....
T Consensus 83 vA~ldg~~-~D~GT~~EiGyA~A~g 106 (157)
T 1f8y_A 83 LGVYIPDE-EDVGLGMELGYALSQG 106 (157)
T ss_dssp EEECCGGG-CCHHHHHHHHHHHHTT
T ss_pred EEEcCCCC-CCccHHHHHHHHHHCC
Confidence 99997433 3566788888776664
No 47
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=23.51 E-value=1.4e+02 Score=22.07 Aligned_cols=57 Identities=11% Similarity=0.009 Sum_probs=33.0
Q ss_pred EEEeceeccCccchHHHHHHHHhcCCeeeeecCCCCC-Cc-ccchhh-cccccceEEEEee
Q 045928 13 IFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNR-GN-EISESL-AIKASAISVIIFS 70 (116)
Q Consensus 13 VFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~l~~-G~-~~~~~i-~I~~s~~~Iiv~S 70 (116)
|.|=| ..|.....+..+.+.+.++|+.+-..+-+.. +. .+...+ .|+++..-++++.
T Consensus 133 vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~ 192 (389)
T 3o21_A 133 FVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLID 192 (389)
T ss_dssp EEEEE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEE
Confidence 33444 3344456777888888888887644332322 32 466666 7777665545543
No 48
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=22.99 E-value=1e+02 Score=24.29 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=26.5
Q ss_pred ceecEEEeceeccCccchHHHHHHHHhcCCeeeeec
Q 045928 9 KKYDIFVSCSGEDTCDSFTSHLYSALSRQNIQTFID 44 (116)
Q Consensus 9 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D 44 (116)
...||||..-+++. ...+..|...|.++||++-+|
T Consensus 418 ~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~ 452 (517)
T 4g85_A 418 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELL 452 (517)
T ss_dssp CCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEE
Confidence 56789987655543 346778999999999999665
No 49
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=22.87 E-value=27 Score=21.76 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=24.1
Q ss_pred cccccceEEEEeecCCccchhhHHHHHHHHHhhhc
Q 045928 58 AIKASAISVIIFSEDYASSRWCLDELVEILECKKC 92 (116)
Q Consensus 58 ~I~~s~~~Iiv~S~~~~~S~wc~~El~~il~~~~~ 92 (116)
.+=++.++++|+|++=--..||--.+..++++...
T Consensus 36 vLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~ 70 (90)
T 3p57_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE 70 (90)
T ss_dssp HHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred hccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHh
Confidence 45578899999999854455654556666766544
No 50
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=22.63 E-value=1.5e+02 Score=24.06 Aligned_cols=57 Identities=9% Similarity=-0.015 Sum_probs=35.3
Q ss_pred EEEeceeccCccchHHHHHHHHhcCCeeeeecCCCCCC-----cccchhh-cccccceEEEEee
Q 045928 13 IFVSCSGEDTCDSFTSHLYSALSRQNIQTFIDDQLNRG-----NEISESL-AIKASAISVIIFS 70 (116)
Q Consensus 13 VFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~l~~G-----~~~~~~i-~I~~s~~~Iiv~S 70 (116)
|-|=| ..|.....+..|.+++.++|+.+-....+..+ ..+...+ .|+++..-++++-
T Consensus 124 v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~ 186 (823)
T 3kg2_A 124 FAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILD 186 (823)
T ss_dssp EEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEE
T ss_pred EEEEE-eCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEE
Confidence 33434 34445678889999999999877444333332 4555666 7777665444443
No 51
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=20.24 E-value=42 Score=25.63 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=27.6
Q ss_pred ceecEEEeceeccCccchHHHHHHHHhcC--CeeeeecCC
Q 045928 9 KKYDIFVSCSGEDTCDSFTSHLYSALSRQ--NIQTFIDDQ 46 (116)
Q Consensus 9 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~ 46 (116)
..++|+|-.-+++. ...+..|++.|.++ |+.|-+|..
T Consensus 326 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~ 364 (423)
T 1htt_A 326 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG 364 (423)
T ss_dssp CSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCS
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCC
Confidence 45788877655432 35678999999998 999988754
Done!