BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045930
(661 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 24/227 (10%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKST---LLDALAGRLSGNVVMTG---- 66
+F + ++L ++ A+P I+A GPSG GKST LL+ +G + + G
Sbjct: 8 DFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID 67
Query: 67 NVLLNGKKRRLDYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA 125
N+ L + + + +V+Q++ IM GT +RE + Y L + +E++ V++ A
Sbjct: 68 NISLENWRSQ-----IGFVSQDSAIMAGT--IRENLTYG----LEGDYTDEDLWQVLDLA 116
Query: 126 ITEMGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
+E+ D+L RG ISGG+++RL+IA L P++L LDE T+ LDS +
Sbjct: 117 FARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 184 FVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230
V K L ++ GRT + H+ S+ V A D ++ + G+ G+
Sbjct: 177 MVQKALDSLMK-GRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGK 220
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 11 VVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL 70
VV N+ + P+ +L GL+ + + LA++G SG GKST++ L M G+V L
Sbjct: 1036 VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFL 1092
Query: 71 NGKK-RRLDY----GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA 125
+GK+ ++L+ + V+QE I+ ++ E IAY + R+ S EEI +EA
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSY---EEIVRAAKEA 1148
Query: 126 ITEMGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
++ D+ +G +SGG+K+R++IA ++ +P +L LDE TS LD+ +
Sbjct: 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 184 FVVKILKNIAHDGRTIISSIHQPSS 208
V + L A +GRT I H+ S+
Sbjct: 1209 VVQEALDK-AREGRTCIVIAHRLST 1232
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 36/225 (16%)
Query: 19 PTRR---LLNGLTGYAEPARILAVMGPSGSGKST---LLDALAGRLSGNVVMTGNVLLNG 72
P+R+ +L GL + + +A++G SG GKST L+ L L G V + G +
Sbjct: 398 PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTI 457
Query: 73 KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT-DVIEEAITE--- 128
R L + V+QE ++ T T+ E I Y E++T D IE+A+ E
Sbjct: 458 NVRYLREI-IGVVSQEPVLFAT-TIAENIRY----------GREDVTMDEIEKAVKEANA 505
Query: 129 ----MGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
M L D L+G RG +SGG+K+R++IA ++ P++L LDE TS LD+ +
Sbjct: 506 YDFIMKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 183 FFVVKILKNIAHDGRTIISSIHQPSS----EVFALFDDLFLLSGG 223
VV+ + A +GRT I H+ S+ +V A FD ++ G
Sbjct: 563 -AVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 11 VVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL 70
VV N+ + P+ +L GL+ + + LA++G SG GKST++ L M G+V L
Sbjct: 1036 VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFL 1092
Query: 71 NGKK-RRLDY----GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA 125
+GK+ ++L+ + V+QE I+ ++ E IAY + R+ S EEI +EA
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSY---EEIVRAAKEA 1148
Query: 126 ITEMGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
++ D+ +G +SGG+K+R++IA ++ +P +L LDE TS LD+ +
Sbjct: 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 184 FVVKILKNIAHDGRTIISSIHQPSS 208
V + L A +GRT I H+ S+
Sbjct: 1209 VVQEALDK-AREGRTCIVIAHRLST 1232
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 36/225 (16%)
Query: 19 PTRR---LLNGLTGYAEPARILAVMGPSGSGKST---LLDALAGRLSGNVVMTGNVLLNG 72
P+R+ +L GL + + +A++G SG GKST L+ L L G V + G +
Sbjct: 398 PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTI 457
Query: 73 KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT-DVIEEAITE--- 128
R L + V+QE ++ T T+ E I Y E++T D IE+A+ E
Sbjct: 458 NVRYLREI-IGVVSQEPVLFAT-TIAENIRY----------GREDVTMDEIEKAVKEANA 505
Query: 129 ----MGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
M L D L+G RG +SGG+K+R++IA ++ P++L LDE TS LD+ +
Sbjct: 506 YDFIMKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 183 FFVVKILKNIAHDGRTIISSIHQPSS----EVFALFDDLFLLSGG 223
VV+ + A +GRT I H+ S+ +V A FD ++ G
Sbjct: 563 -AVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKST---LLDALAGRLSGN 61
+++V+ PN P ++L GLT P ++ A++GP+GSGKST LL L G
Sbjct: 19 FQDVSFAYPNH---PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
V++ G L+ L + VA V QE ++ G + RE IAY R P+ EEIT V
Sbjct: 76 VLLDGEPLVQYDHHYL-HTQVAAVGQEPLLFGR-SFRENIAYGL-TRTPTM---EEITAV 129
Query: 122 IEEAITE---MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
E+ G D +G +SGG+++ +++A ++ +P+LL LD+ TS LD
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGET-GNQLSGGQRQAVALARALIRKPRLLILDQATSALD 188
Query: 179 SAAAFFVVKIL-KNIAHDGRTIISSIHQPS 207
+ V ++L ++ RT++ HQ S
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITHQLS 218
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 27/252 (10%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVL--LNGKKRRLD 78
LN + + +A++GPSGSGKSTLL +AG SG + + L K R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDR--- 75
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
V V Q + +TV + IA+ LR EEI + E + + D+L
Sbjct: 76 --NVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHI----DKL 126
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GR 197
+ + W+ +SGG+++R++IA ++ P++L LDEP S LD+ V LK + + G
Sbjct: 127 LNRYPWQ-LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 198 TIISSIHQPSSEVFALFDDLFLLSGGETVYFG---EAKSAPTFFAEAGFPCPTRRNPSDH 254
T + H +E A+ D + ++ GE + G E P + GF NP +
Sbjct: 186 TTVYVTHD-QAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLG----NPPMN 240
Query: 255 FLRCINSDFDVV 266
F+ D +V
Sbjct: 241 FVEAKVEDGKLV 252
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 14/180 (7%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLD----YGGVAYVTQENI 90
+ A++GPSGSGKST+L L RL +G + L+G R+L+ + V+QE I
Sbjct: 372 VTALVGPSGSGKSTVLSLLL-RLYDPA--SGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 428
Query: 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI--S 148
+ + ++ E IAY A PS++ EEI V E A + + +G+ S
Sbjct: 429 LF-SCSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 485
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208
GG+K+R++IA +L P++L LDE TS LD+ + V + L + DGRT++ H+ S+
Sbjct: 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHRLST 544
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 14/180 (7%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLD----YGGVAYVTQENI 90
+ A++GPSGSGKST+L L RL +G + L+G R+L+ + V+QE I
Sbjct: 403 VTALVGPSGSGKSTVLSLLL-RLYDPA--SGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 459
Query: 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI--S 148
+ + ++ E IAY A PS++ EEI V E A + + +G+ S
Sbjct: 460 LF-SCSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 516
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208
GG+K+R++IA +L P++L LDE TS LD+ + V + L + DGRT++ H S+
Sbjct: 517 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHHLST 575
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 16/191 (8%)
Query: 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKST---LLDALAGRLSGN 61
+++V+ PN P ++L GLT P ++ A++GP+GSGKST LL L G
Sbjct: 19 FQDVSFAYPNH---PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
V++ G L+ L + VA V QE ++ G + RE IAY R P+ EEIT V
Sbjct: 76 VLLDGEPLVQYDHHYL-HTQVAAVGQEPLLFGR-SFRENIAYGL-TRTPTM---EEITAV 129
Query: 122 IEEAITE---MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
E+ G D +G + +SGG+++ +++A ++ +P+LL LD TS LD
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 179 SAAAFFVVKIL 189
+ V ++L
Sbjct: 189 AGNQLRVQRLL 199
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 25/222 (11%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKST---LLDALAGRLSGNVVMTGNVL--LNGK 73
P +L GL+ EP + LA++GPSG GKST LL+ L G + + G+ + LN +
Sbjct: 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPE 1149
Query: 74 KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED 133
R +A V+QE + ++ E I Y PS++ ++ EEA + +
Sbjct: 1150 HTR---SQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQV----EEAARLANIHN 1198
Query: 134 CADRLIGNWHWR------GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK 187
L + R +SGG+K+R++IA ++ P++L LDE TS LD+ + V +
Sbjct: 1199 FIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQE 1258
Query: 188 ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
L A +GRT I H+ ++ + A D + ++S G + G
Sbjct: 1259 ALDR-AREGRTCIVIAHRLNTVMNA--DCIAVVSNGTIIEKG 1297
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 21/225 (9%)
Query: 17 SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR 76
S P +L G+ + +A++G SG GKST++ L L V+ G + ++G R
Sbjct: 427 SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLL---LRYYDVLKGKITIDGVDVR 483
Query: 77 ---LDY--GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-- 129
L++ VA V+QE + T+ E I+ + EE+ + A E
Sbjct: 484 DINLEFLRKNVAVVSQEPALF-NCTIEENISLGKE-----GITREEMVAACKMANAEKFI 537
Query: 130 -GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188
L + + L+G+ + +SGG+K+R++IA ++ P++L LDE TS LD+ + V +
Sbjct: 538 KTLPNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQA 596
Query: 189 LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
L A GRT I H+ S+ A D + G+ V G+ ++
Sbjct: 597 LDKAAK-GRTTIIIAHRLSTIRNA--DLIISCKNGQVVEVGDHRA 638
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 34/231 (14%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG--- 80
L G+ + + A++G +G GKSTL G L + +G +L + K +DY
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKP--IDYSRKG 78
Query: 81 --------GVAYVTQENIMLGTLTVRETIAYSA-HLRLPSNMNNEEITDVIEEAITEMGL 131
G+ + +N L + +V + +++ A +++LP + EI ++ A+ G+
Sbjct: 79 IMKLRESIGIVFQDPDN-QLFSASVYQDVSFGAVNMKLPED----EIRKRVDNALKRTGI 133
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
E D+ +S G+KKR++IA ++ P++L LDEPT+GLD ++K+L
Sbjct: 134 EHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 192 IAHD-GRTIISSIHQPSSEVFALF-DDLFLLSGGETVYFGEAKSAPTFFAE 240
+ + G TII + H ++ L+ D++F++ G + G K FAE
Sbjct: 189 MQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPKEV---FAE 234
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 25/253 (9%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKKRRLDY 79
+ ++G++ + +A++GPSG GK+T L LAG + + + +VL+N + Y
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--Y 74
Query: 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
V V Q + +TV E IA+ R S D +E+ + E+ + D L+
Sbjct: 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISK-------DEVEKRVVEIARKLLIDNLL 127
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRT 198
+ +SGG+++R+++A ++ +P++L DEP S LD+ + +K++ + G T
Sbjct: 128 DRKPTQ-LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 199 IISSIHQPSSEVFALFDDLFLLSGGETVYFG---EAKSAPTFFAEAGFPCPTRRNPSDHF 255
+ H +E + + + + G+ V +G E +P A F NP +F
Sbjct: 187 SVYVTHD-QAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIG----NPPTNF 241
Query: 256 LRCINSDFDVVTE 268
LR DF V E
Sbjct: 242 LR----DFSVSVE 250
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 16/191 (8%)
Query: 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKST---LLDALAGRLSGN 61
+++V+ PN P ++L GLT P ++ A++GP+GSGKST LL L G
Sbjct: 19 FQDVSFAYPNH---PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
V++ G L+ L + VA V QE ++ G + RE IAY R P+ EEIT V
Sbjct: 76 VLLDGEPLVQYDHHYL-HTQVAAVGQEPLLFGR-SFRENIAYGL-TRTPT---MEEITAV 129
Query: 122 IEEAITE---MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
E+ G D +G + ++ G+++ +++A ++ +P+LL LD TS LD
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQ-LAVGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 179 SAAAFFVVKIL 189
+ V ++L
Sbjct: 189 AGNQLRVQRLL 199
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 21/189 (11%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYG 80
+L + E +I V+G +GSGK+TLL LAG L+ G + L+G L
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA----AGEIFLDGSPADPFLLRK 81
Query: 81 GVAYVTQE--NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED--CAD 136
V YV Q + ++G TV E +A+S + ++ E+ I++ + +GL AD
Sbjct: 82 NVGYVFQNPSSQIIGA-TVEEDVAFSLEIM---GLDESEMRKRIKKVLELVGLSGLAAAD 137
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
L +SGG+K+RL+IA + + L LDEP S LD + + ++L+++ ++G
Sbjct: 138 PL-------NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEG 190
Query: 197 RTIISSIHQ 205
+ II H+
Sbjct: 191 KGIILVTHE 199
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLL---DALAGRLSGNVVMTGNVLLNGKKRR 76
T + LN ++ + +I V+G SG+GKSTL+ + L G+V++ G L +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 76
Query: 77 LDYG--GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
L + + Q +L + TV +A L N +E+ + E ++ +GL D
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDK 133
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
D N +SGG+K+R++IA + + P++L DE TS LD A ++++LK+I
Sbjct: 134 HDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
Query: 195 D-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFP 244
G TI+ H+ V + D + ++S GE + E + F+ P
Sbjct: 189 RLGLTILLITHEMDV-VKRICDCVAVISNGELI---EQDTVSEVFSHPKTP 235
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 31/222 (13%)
Query: 40 MGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG----GVAYVTQENIMLGTL 95
+GPSG GKSTLL +AG + +G++ + G+KR D GV V Q + L
Sbjct: 35 VGPSGCGKSTLLRMIAGL---ETITSGDLFI-GEKRMNDTPPAERGVGMVFQSYALYPHL 90
Query: 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155
+V E +++ L + E I + + + L DR + +SGG+++R+
Sbjct: 91 SVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRV 142
Query: 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFV-VKILKNIAHDGRTIISSIHQPSSEVFALF 214
+I ++ P + LDEP S LD+A + ++I + GRT+I H E L
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLA 201
Query: 215 DDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFL 256
D + +L G A+ G P P+D F+
Sbjct: 202 DKIVVLDAGRV-------------AQVGKPLELYHYPADRFV 230
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 31/222 (13%)
Query: 40 MGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG----GVAYVTQENIMLGTL 95
+GPSG GKSTLL +AG + +G++ + G+KR D GV V Q + L
Sbjct: 35 VGPSGCGKSTLLRMIAGL---ETITSGDLFI-GEKRMNDTPPAERGVGMVFQSYALYPHL 90
Query: 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155
+V E +++ L + E I + + + L DR + +SGG+++R+
Sbjct: 91 SVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRV 142
Query: 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFV-VKILKNIAHDGRTIISSIHQPSSEVFALF 214
+I ++ P + LDEP S LD+A + ++I + GRT+I H E L
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLA 201
Query: 215 DDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFL 256
D + +L G A+ G P P+D F+
Sbjct: 202 DKIVVLDAGRV-------------AQVGKPLELYHYPADRFV 230
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLL---DALAGRLSGNVVMTGNVLLNGKKRR 76
T + LN ++ + +I V+G SG+GKSTL+ + L G+V++ G L +
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99
Query: 77 LDYG--GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
L + + Q +L + TV +A L N +E+ + E ++ +GL D
Sbjct: 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDK 156
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
D N +SGG+K+R++IA + + P++L D+ TS LD A ++++LK+I
Sbjct: 157 HDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 195 D-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFP 244
G TI+ H+ V + D + ++S GE + E + F+ P
Sbjct: 212 RLGLTILLITHEMDV-VKRICDCVAVISNGELI---EQDTVSEVFSHPKTP 258
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLL---DALAGRLSGNVVMTGNVLLNGKKRR 76
T + LN ++ + +I V+G SG+GKSTL+ + L G+V++ G L +
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99
Query: 77 LDYG--GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
L + + Q +L + TV +A L N +E+ + E ++ +GL D
Sbjct: 100 LTKARRQIGXIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDK 156
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
D N +SGG+K+R++IA + + P++L D+ TS LD A ++++LK+I
Sbjct: 157 HDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 195 D-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFP 244
G TI+ H+ V + D + ++S GE + E + F+ P
Sbjct: 212 RLGLTILLITHEXDV-VKRICDCVAVISNGELI---EQDTVSEVFSHPKTP 258
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 18/213 (8%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLD 78
R + G++ ++ ++GPSGSGK+T+L +AG G+V + G + + ++ +
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYS-AHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
G V Q + +TV + +++ R+P + E+ + E + M LE A+R
Sbjct: 89 VG---LVFQNYALFQHMTVYDNVSFGLREKRVPKD----EMDARVRELLRFMRLESYANR 141
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
+SGG+++R+++A + RPQ+L DEP + +D+ + ++ + HD
Sbjct: 142 FPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV-HDEM 195
Query: 198 TIISS-IHQPSSEVFALFDDLFLLSGGETVYFG 229
+ S + E + D + +L G FG
Sbjct: 196 GVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 31/222 (13%)
Query: 40 MGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG----GVAYVTQENIMLGTL 95
+GPSG GKSTLL +AG + +G++ + G+KR D GV V Q + L
Sbjct: 35 VGPSGCGKSTLLRMIAGL---ETITSGDLFI-GEKRMNDTPPAERGVGMVFQSYALYPHL 90
Query: 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155
+V E +++ L + E I + + + L DR + +SGG+++R+
Sbjct: 91 SVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRV 142
Query: 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFV-VKILKNIAHDGRTIISSIHQPSSEVFALF 214
+I ++ P + LD+P S LD+A + ++I + GRT+I H E L
Sbjct: 143 AIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLA 201
Query: 215 DDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFL 256
D + +L G A+ G P P+D F+
Sbjct: 202 DKIVVLDAGRV-------------AQVGKPLELYHYPADRFV 230
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 20/215 (9%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNG--KKR 75
+ +L G++ E I ++GP+G+GK+T L ++ + SG V + G ++ + R
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 87
Query: 76 RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDC 134
+L ++Y+ +E + E + + A S+ EI +++E A GL E
Sbjct: 88 KL----ISYLPEEAGAYRNMQGIEYLRFVAGFYASSS---SEIEEMVERATEIAGLGEKI 140
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
DR+ + + +G+ ++L IA ++ P+L LDEPTSGLD A V KILK +
Sbjct: 141 KDRV--STYSKGMV----RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+G TI+ S H EV L D + L+ G V G
Sbjct: 195 EGLTILVSSHN-MLEVEFLCDRIALIHNGTIVETG 228
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 24/205 (11%)
Query: 36 ILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML 92
ILAV+G +G GKSTLLD L G + G + + ++ G + AY + +++
Sbjct: 33 ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSI---GFVPQFFSSPFAYSVLDIVLM 89
Query: 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152
G T T A P + + + V +A+ + L A R + +SGG++
Sbjct: 90 GRSTHINTFAK------PKSHDYQ----VAMQALDYLNLTHLAKR-----EFTSLSGGQR 134
Query: 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVF 211
+ + IA I + +L+ LDEPTS LD A V+ +L ++A T++ + HQP ++V
Sbjct: 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVV 193
Query: 212 ALFDDLFLLSGGETVYFGEAKSAPT 236
A+ + LL+ + FGE ++ T
Sbjct: 194 AIANKTLLLN-KQNFKFGETRNILT 217
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 97/200 (48%), Gaps = 22/200 (11%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLL---DALAGRLSGNVVMTGNVLL 70
+FGS +L G+ + ++ V+GPSGSGKST L + L G +++ G + L
Sbjct: 12 SFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG-INL 67
Query: 71 NGKKRRLDY--GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN---EEITDVIEEA 125
K L+ V V Q + +TV I + P + E+ E
Sbjct: 68 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMEL 122
Query: 126 ITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185
+ ++GL+D A + + +SGG+ +R++IA + P+++ DEPTS LD V
Sbjct: 123 LDKVGLKDKA-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV 177
Query: 186 VKILKNIAHDGRTIISSIHQ 205
+ ++K +A++G T++ H+
Sbjct: 178 LSVMKQLANEGMTMVVVTHE 197
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 97/200 (48%), Gaps = 22/200 (11%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLL---DALAGRLSGNVVMTGNVLL 70
+FGS +L G+ + ++ V+GPSGSGKST L + L G +++ G + L
Sbjct: 33 SFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG-INL 88
Query: 71 NGKKRRLDY--GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN---EEITDVIEEA 125
K L+ V V Q + +TV I + P + E+ E
Sbjct: 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMEL 143
Query: 126 ITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185
+ ++GL+D A + + +SGG+ +R++IA + P+++ DEPTS LD V
Sbjct: 144 LDKVGLKDKA-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV 198
Query: 186 VKILKNIAHDGRTIISSIHQ 205
+ ++K +A++G T++ H+
Sbjct: 199 LSVMKQLANEGMTMVVVTHE 218
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 25/235 (10%)
Query: 16 GSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR 75
G+ ++ L ++ L V G +GSGKSTLL +AG + +G+VL +G+++
Sbjct: 15 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERK 71
Query: 76 RLDYG-----GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
+ Y G+A+ E+ V + +A++ P + + ++++A+ +G
Sbjct: 72 K-GYEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYP----DRDPVPLVKKAMEFVG 125
Query: 131 LE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189
L+ D + + +SGGEK+R++IA I+ P +L LDEP GLD +++I+
Sbjct: 126 LDFDSFKDRVPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 190 KNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE-----AKSAPTFFA 239
+ G+T+I H + V D + +L G+ V+ G K P FF
Sbjct: 182 EKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFT 235
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 25/235 (10%)
Query: 16 GSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR 75
G+ ++ L ++ L V G +GSGKSTLL +AG + +G+VL +G+++
Sbjct: 17 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERK 73
Query: 76 RLDYG-----GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
+ Y G+A+ E+ V + +A++ P + + ++++A+ +G
Sbjct: 74 K-GYEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYP----DRDPVPLVKKAMEFVG 127
Query: 131 LE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189
L+ D + + +SGGEK+R++IA I+ P +L LDEP GLD +++I+
Sbjct: 128 LDFDSFKDRVPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 183
Query: 190 KNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE-----AKSAPTFFA 239
+ G+T+I H + V D + +L G+ V+ G K P FF
Sbjct: 184 EKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFT 237
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 25/207 (12%)
Query: 38 AVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLG---- 93
++GPSG+GK+T + +AG +V TG + + R + G V E+ +G
Sbjct: 35 GILGPSGAGKTTFMRIIAGL---DVPSTGELYFD--DRLVASNGKLIVPPEDRKIGMVFQ 89
Query: 94 ------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147
LT E IA+ M+ EEI +EE + + N R +
Sbjct: 90 TWALYPNLTAFENIAFPL---TNMKMSKEEIRKRVEEVAKILDIHHVL-----NHFPREL 141
Query: 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSIHQP 206
SGG+++R+++A ++ P LL LDEP S LD+ ++K + + G T++ H P
Sbjct: 142 SGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201
Query: 207 SSEVFALFDDLFLLSGGETVYFGEAKS 233
+++FA+ D + +L G+ V G+ +
Sbjct: 202 -ADIFAIADRVGVLVKGKLVQVGKPED 227
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 103/213 (48%), Gaps = 17/213 (7%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK---RRLDYG 80
L+ L+ E ++GP+G+GK+ L+ +AG +V +G +LL+GK +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG---FHVPDSGRILLDGKDVTDLSPEKH 72
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG 140
+A+V Q + + V++ + + +R+ + + + D + + +E DR
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDPKRVLDTARD----LKIEHLLDR--- 123
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+ +SGGE++R+++A ++T P++L LDEP S LD ++L + + +
Sbjct: 124 --NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 201 SSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
I +E + D + ++ G+ + G+ +
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 24/194 (12%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG- 81
+L G++ + ++++G SGSGKSTLL L G L + G V L GK+ +DY
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLL--DAPTEGKVFLEGKE--VDYTNE 73
Query: 82 ----------VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL 131
+ +V Q + ++ LT E + L +E + E ++E+GL
Sbjct: 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGL 130
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
D R +SGGE++R++IA + P LLF DEPT LDSA V+ I
Sbjct: 131 GDKLSR-----KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185
Query: 192 IAHDGRTIISSIHQ 205
I G +I+ H+
Sbjct: 186 INEGGTSIVMVTHE 199
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 16/191 (8%)
Query: 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKST---LLDALAGRLSGN 61
+++V+ PN P +L GLT P + A++GP+GSGKST LL L G
Sbjct: 17 FQDVSFAYPNR---PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
+++ G L + R L + VA V QE + G +++E IAY L EEIT
Sbjct: 74 LLLDGKPLPQYEHRYL-HRQVAAVGQEPQVFGR-SLQENIAYG----LTQKPTMEEITAA 127
Query: 122 IEEAITEM---GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
++ GL D + + +SGG+++ +++A ++ +P +L LD+ TS LD
Sbjct: 128 AVKSGAHSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALD 186
Query: 179 SAAAFFVVKIL 189
+ + V ++L
Sbjct: 187 ANSQLQVEQLL 197
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 11/175 (6%)
Query: 37 LAVMGPSGSGKSTLLD---ALAGRLSGNVVMTG---NVLLNGKKRRLDYGGVAYVTQENI 90
+++MGPSGSGKST+L+ L G V + N L + + ++ + +V Q+
Sbjct: 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93
Query: 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150
++ LT E + + M+ EE E + LE+ N +SGG
Sbjct: 94 LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE----RFANHKPNQLSGG 149
Query: 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSIH 204
+++R++IA + P ++ D+PT LDS ++++LK + DG+T++ H
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 25/208 (12%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG-----VAYVT 86
E +A +G SG GKSTL++ L R V +G +L++G + G + V
Sbjct: 365 EKGETVAFVGMSGGGKSTLIN-LIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQ 421
Query: 87 QENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE---MGLEDCADRLIGNWH 143
Q+NI+ TV+E I L P+ +EE+ + + A M L D +G
Sbjct: 422 QDNILFSD-TVKENIL----LGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE-- 473
Query: 144 WRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIIS 201
RG+ SGG+K+RLSIA L P +L LDE TS LD + + + L ++ D T+I
Sbjct: 474 -RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIV 532
Query: 202 SIHQPSSEVFALFDDLFLLSGGETVYFG 229
+ H+ S+ A D + ++ G V G
Sbjct: 533 A-HRLSTITHA--DKIVVIENGHIVETG 557
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLL-------DALAGRLSGNVVMTGNVLLNG 72
T +L+G+ +P ++AV+G +GSGKSTL+ D GR+ + + V L
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414
Query: 73 KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE---M 129
+ G ++ V QE ++ T++E + + + ++EI + + A +
Sbjct: 415 LR-----GHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFII 463
Query: 130 GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189
L + D + R SGG+K+RLSIA ++ +P++L LD+ TS +D ++ L
Sbjct: 464 SLPEGYDSRV-ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGL 522
Query: 190 KNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
K T I + P++ L D + +L G+ FG K
Sbjct: 523 KRYTKGCTTFIITQKIPTA---LLADKILVLHEGKVAGFGTHKE 563
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 11/175 (6%)
Query: 37 LAVMGPSGSGKSTLLD---ALAGRLSGNVVMTG---NVLLNGKKRRLDYGGVAYVTQENI 90
+++MGPSGSGKST+L+ L G V + N L + + ++ + +V Q+
Sbjct: 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93
Query: 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150
++ LT E + + M+ EE E + LE+ N +SGG
Sbjct: 94 LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE----RFANHKPNQLSGG 149
Query: 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSIH 204
+++R++IA + P ++ D+PT LDS ++++LK + DG+T++ H
Sbjct: 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 14/194 (7%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR-----LSGNVVMTGNVLLNGKKR 75
+ +L GL+ P + A+MGP+GSGKSTL LAGR G V G LL
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 73
Query: 76 RLDYGGVAYVTQENIMLGTLT----VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL 131
G+ Q + + ++ ++ + R ++ + D++EE I + +
Sbjct: 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 133
Query: 132 -EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
ED R + G SGGEKKR I + P+L LDE SGLD A V +
Sbjct: 134 PEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 189
Query: 191 NIAHDGRTIISSIH 204
++ R+ I H
Sbjct: 190 SLRDGKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 14/194 (7%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR-----LSGNVVMTGNVLLNGKKR 75
+ +L GL+ P + A+MGP+GSGKSTL LAGR G V G LL
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92
Query: 76 RLDYGGVAYVTQENIMLGTLT----VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL 131
G+ Q + + ++ ++ + R ++ + D++EE I + +
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152
Query: 132 -EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
ED R + G SGGEKKR I + P+L LDE SGLD A V +
Sbjct: 153 PEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 208
Query: 191 NIAHDGRTIISSIH 204
++ R+ I H
Sbjct: 209 SLRDGKRSFIIVTH 222
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 25/207 (12%)
Query: 38 AVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLG---- 93
++GPSG+GK+T + +AG +V TG + + R + G V E+ +G
Sbjct: 35 GILGPSGAGKTTFMRIIAGL---DVPSTGELYFD--DRLVASNGKLIVPPEDRKIGMVFQ 89
Query: 94 ------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147
LT E IA+ M+ EEI +EE + + N R +
Sbjct: 90 TWALYPNLTAFENIAFPL---TNMKMSKEEIRKRVEEVAKILDIHHVL-----NHFPREL 141
Query: 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSIHQP 206
SG +++R+++A ++ P LL LDEP S LD+ ++K + + G T++ H P
Sbjct: 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201
Query: 207 SSEVFALFDDLFLLSGGETVYFGEAKS 233
+++FA+ D + +L G+ V G+ +
Sbjct: 202 -ADIFAIADRVGVLVKGKLVQVGKPED 227
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 24/202 (11%)
Query: 39 VMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK-------KRRLDYGGVAYVTQENIM 91
++GP+G+GKS L+ +AG + + G V LNG +RR G+ +V Q+ +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR----GIGFVPQDYAL 81
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151
L+V IAY N+ E + E ++G+ DR +SGGE
Sbjct: 82 FPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGE 131
Query: 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVF 211
++R+++A ++ +P+LL LDEP S +D +++ L+ + + I + E
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191
Query: 212 ALFDDLFLLSGGETVYFGEAKS 233
L D++ ++ G V G+ K
Sbjct: 192 MLADEVAVMLNGRIVEKGKLKE 213
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 20/152 (13%)
Query: 37 LAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKK------RRLDYGGVAYVTQ 87
L ++GPSG GK+T L +AG G + + N++ + +K + D VA V Q
Sbjct: 35 LVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERD---VAXVFQ 91
Query: 88 ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147
+ TV + IA+ LR + +EI + E +GL + +R R +
Sbjct: 92 SYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGLTELLNR-----KPREL 143
Query: 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179
SGG+++R+++ I+ RP++ DEP S LD+
Sbjct: 144 SGGQRQRVALGRAIIRRPKVFLXDEPLSNLDA 175
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 14/202 (6%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI 90
+I+ ++G +G+GK+T L A+AG + G ++ G + N ++ G+A V +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLIGNWHWRGISG 149
+ LTV E + A+ R + E I +E + L++ +L G +SG
Sbjct: 92 IFPELTVYENLXXGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSG 142
Query: 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE 209
GE++ L+I + +RP+LL DEP+ GL V ++++ I +G TI+ + Q +
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL-LVEQNALG 201
Query: 210 VFALFDDLFLLSGGETVYFGEA 231
+ ++L G+ V G+A
Sbjct: 202 ALKVAHYGYVLETGQIVLEGKA 223
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 22/165 (13%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---------RLSGNVVMTGNVLLNGK 73
+LN ++ +P IL ++G SG GK+TLL LAG LSG + + N L +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 74 KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED 133
+RRL Y+ QE ++ LTV IAY + N + E E LE
Sbjct: 79 ERRL-----GYLVQEGVLFPHLTVYRNIAY--------GLGNGKGRTAQERQRIEAMLEL 125
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+ + +SGG+++R ++A + P+L+ LDEP S LD
Sbjct: 126 TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 21/215 (9%)
Query: 37 LAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKKRRL----DYGGVAYVTQENI 90
+ ++GPSG GK+T L +AG S + G+ L+ ++ + +A V Q
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91
Query: 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150
+ +TV + IA+ LR + +EI + E +GL + +R R +SGG
Sbjct: 92 LYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGG 143
Query: 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSE 209
+++R+++ I+ +PQ+ +DEP S LD+ + LK + G T I H E
Sbjct: 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVE 202
Query: 210 VFALFDDLFLLSGGETVYFGEA-----KSAPTFFA 239
+ D + +++ G G K A TF A
Sbjct: 203 AMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVA 237
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS---GNVVMTGNVLLNGKKRRLDY 79
L+N ++ + ++A++GP+G+GKSTLL L G LS G + G L + + + L
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLP--SNMNNEEITDVIEEAITEMGLEDCADR 137
A + Q + + +V E I R P + + + + V M DC
Sbjct: 86 TR-AVMRQYSELAFPFSVSEVIQMG---RAPYGGSQDRQALQQV-------MAQTDCLA- 133
Query: 138 LIGNWHWRGISGGEKKRLSIA--LEILTRPQ----LLFLDEPTSGLDSAAAFFVVKILKN 191
+ +R +SGGE++R+ +A L L +PQ LFLDEPTS LD +++L+
Sbjct: 134 -LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ 192
Query: 192 IAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+ + + + D + LL+ G+ V G
Sbjct: 193 LTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACG 230
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGN-VVMTGNVLLNGKK---------RRLDYGGVAYV 85
+ A++G S SGKST+++A+ L N +++G VL GK R++ + +A V
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 86 TQENIMLGTLTVRETIAYSAHLR--LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
Q ++ T+ H + + ++ +++IE+A ++ + + N +
Sbjct: 96 PQA----AQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSY 151
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK 187
+SGG K+R+ IAL +L P +L LDEPTS LD +++
Sbjct: 152 PLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 37 LAVMGPSGSGKSTLLD---ALAGRLSGNVVMTG---NVLLNGKKRRLDYGGVAYVTQENI 90
+++ GPSGSGKST L+ L G V + N L + + ++ + +V Q+
Sbjct: 34 VSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93
Query: 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150
++ LT E + + + EE E + LE+ N +SGG
Sbjct: 94 LIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE----RFANHKPNQLSGG 149
Query: 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSIH 204
+++R++IA + P ++ DEPT LDS + ++LK + DG+T++ H
Sbjct: 150 QQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 26/229 (11%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRLDYGG 81
L L+G IL ++GP+G+GKSTLL AG S G++ G L +L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLAL-H 74
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
AY++Q+ V + H ++ T+++ + + L+D R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTNQ 126
Query: 142 WHWRGISGGEKKRLSIALEIL-----TRP--QLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
+SGGE +R+ +A +L P QLL LDEP + LD A + KIL ++
Sbjct: 127 -----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS--APTFFAEA 241
G I+ S H + +LL GG+ + G + P A+A
Sbjct: 182 QGLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 26/190 (13%)
Query: 66 GNVLLNGKKRRL--DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIE 123
G +++NG+ L D G V +N L L R T+ + H L S+M + +V+E
Sbjct: 61 GAIIVNGQNINLVRDKDGQLKVADKN-QLRLLRTRLTMVFQ-HFNLWSHMTV--LENVME 116
Query: 124 EAITEMGL--EDCADRLIGNWHWRGI------------SGGEKKRLSIALEILTRPQLLF 169
I +GL D +R + GI SGG+++R+SIA + P +L
Sbjct: 117 APIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 176
Query: 170 LDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ------PSSEVFALFDDLFLLSGG 223
DEPTS LD V++I++ +A +G+T++ H+ SS V L G
Sbjct: 177 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
Query: 224 ETVYFGEAKS 233
FG +S
Sbjct: 237 PEQVFGNPQS 246
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 31/229 (13%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73
+F R L ++ P + LA++GPSG+GKST+L L + +G + ++G+
Sbjct: 60 HFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL---FRFYDISSGCIRIDGQ 116
Query: 74 KRRLDYGGVAYVTQENIM-------LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAI 126
++ VTQ ++ T+ +TIA + + N+E +E A
Sbjct: 117 D-------ISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDE-----VEAAA 164
Query: 127 TEMGLEDCADRLIGNWHW----RGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
G+ D + RG+ SGGEK+R++IA IL P ++ LDE TS LD++
Sbjct: 165 QAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+ L + + RT I H+ S+ V A D + ++ G V G
Sbjct: 225 NERAIQASLAKVCAN-RTTIVVAHRLSTVVNA--DQILVIKDGCIVERG 270
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 26/229 (11%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRLDYGG 81
L L+G IL ++GP+G+GKSTLL AG S G++ G L +L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLAL-H 74
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
AY++Q+ V + H ++ T+++ + + L+D R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTNQ 126
Query: 142 WHWRGISGGEKKRLSIALEIL-----TRP--QLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
+SGGE +R+ +A +L P QLL LDEP + LD A + KIL +
Sbjct: 127 -----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS--APTFFAEA 241
G I+ S H + +LL GG+ + G + P A+A
Sbjct: 182 QGLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 26/229 (11%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRLDYGG 81
L L+G IL ++GP+G+GKSTLL +AG S G++ G L +L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLAL-H 74
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
AY++Q+ V + H ++ T+++ + + L+D R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTNQ 126
Query: 142 WHWRGISGGEKKRLSIALEIL-----TRP--QLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
+SGGE +R+ +A +L P QLL LD+P + LD A + KIL ++
Sbjct: 127 -----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQ 181
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS--APTFFAEA 241
G I+ S H + +LL GG+ + G + P A+A
Sbjct: 182 QGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA 229
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 26/229 (11%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRLDYGG 81
L L+G IL ++GP+G+GKSTLL +AG S G++ G L +L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLAL-H 74
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
AY++Q+ V + H ++ T+++ + + L+D R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTNQ 126
Query: 142 WHWRGISGGEKKRLSIALEIL-----TRP--QLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
+SGGE +R+ +A +L P QLL LD+P LD A + KIL ++
Sbjct: 127 -----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQ 181
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS--APTFFAEA 241
G I+ S H + +LL GG+ + G + P A+A
Sbjct: 182 QGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA 229
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 37/227 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG- 81
+L+ + + ++ ++G SGSGKSTL L R + G VL++G L
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFY--IPENGQVLIDGHDLALADPNW 76
Query: 82 ----VAYVTQENIMLGTLTVR-----------ETIAYSAHLRLPSNMNNEEITDVIEEAI 126
V V Q+N++L + E + Y+A L D I E
Sbjct: 77 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL--------AGAHDFISE-- 126
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
L + + ++G G+SGG+++R++IA ++ P++L DE TS LD + ++
Sbjct: 127 ----LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 187 KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + I GRT+I H+ S+ A D + ++ G+ V G+ K
Sbjct: 182 RNMHKIC-KGRTVIIIAHRLSTVKNA--DRIIVMEKGKIVEQGKHKE 225
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 37/227 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG- 81
+L+ + + ++ ++G SGSGKSTL L R + G VL++G L
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFY--IPENGQVLIDGHDLALADPNW 74
Query: 82 ----VAYVTQENIMLGTLTVR-----------ETIAYSAHLRLPSNMNNEEITDVIEEAI 126
V V Q+N++L + E + Y+A L D I E
Sbjct: 75 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH--------DFISE-- 124
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
L + + ++G G+SGG+++R++IA ++ P++L DE TS LD + ++
Sbjct: 125 ----LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 187 KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + I GRT+I H+ S+ A D + ++ G+ V G+ K
Sbjct: 180 RNMHKICK-GRTVIIIAHRLSTVKNA--DRIIVMEKGKIVEQGKHKE 223
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 37/227 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG- 81
+L+ + + ++ ++G SGSGKSTL L R + G VL++G L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFY--IPENGQVLIDGHDLALADPNW 80
Query: 82 ----VAYVTQENIMLGTLTVR-----------ETIAYSAHLRLPSNMNNEEITDVIEEAI 126
V V Q+N++L + E + Y+A L D I E
Sbjct: 81 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH--------DFISE-- 130
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
L + + ++G G+SGG+++R++IA ++ P++L DE TS LD + ++
Sbjct: 131 ----LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 187 KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + I GRT+I H+ S+ A D + ++ G+ V G+ K
Sbjct: 186 RNMHKICK-GRTVIIIAHRLSTVKNA--DRIIVMEKGKIVEQGKHKE 229
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 38/242 (15%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNV------------VMTGNVLLNGKKRRLDYGGVA 83
++ ++GP+G+GKST + LAG+L N+ GN L N +L G +
Sbjct: 49 VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQN-YFEKLKNGEIR 107
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
V + + + I + ++ + + T +EE + + LE+ +R I +
Sbjct: 108 PVVKPQYV-------DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQH-- 158
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGE +R++IA +L F DEP+S LD + ++ ++ +G++++
Sbjct: 159 ---LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCINSDF 263
H + V D+ + GE +G F++ P T RN + FLR D
Sbjct: 216 HDLA--VLDYLSDIIHVVYGEPGVYG-------IFSQ---PKGT-RNGINEFLRGYLKDE 262
Query: 264 DV 265
+V
Sbjct: 263 NV 264
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 37/233 (15%)
Query: 29 GYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYGGVAYV 85
G + ++ ++GP+G GK+T + LAG G + V + + DY G Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVY- 365
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145
E ++ +L SN E+ + +G+ D DR +
Sbjct: 366 -------------ELLSKIDASKLNSNFYKTEL-------LKPLGIIDLYDREVNE---- 401
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205
+SGGE +R++IA +L + LDEP++ LD V + ++++ +
Sbjct: 402 -LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 206 PSSEVFALFDDLFLLSGGETVY------FGEAKSAPTFFAEAGFPCPTRRNPS 252
+ + D L + G Y G + F A G RR+P
Sbjct: 461 DVLXIDYVSDRLXVFEGEPGKYGRALPPXGXREGXNRFLASIGITF--RRDPD 511
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 37/227 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG- 81
+L+ + + ++ ++G +GSGKSTL L R + G VL++G L
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLT-KLIQRFY--IPENGQVLIDGHDLALADPNW 76
Query: 82 ----VAYVTQENIMLGTLTVR-----------ETIAYSAHLRLPSNMNNEEITDVIEEAI 126
V V Q+N++L + E + Y+A L D I E
Sbjct: 77 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH--------DFISE-- 126
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
L + + ++G G+SGG+++R++IA ++ P++L DE TS LD + ++
Sbjct: 127 ----LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 187 KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + I GRT+I H+ S+ A D + ++ G+ V G+ K
Sbjct: 182 RNMHKIC-KGRTVIIIAHRLSTVKNA--DRIIVMEKGKIVEQGKHKE 225
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 37/227 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG- 81
+L+ + + ++ ++G SGSGKSTL L R + G VL++G L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFY--IPENGQVLIDGHDLALADPNW 80
Query: 82 ----VAYVTQENIMLGTLTVR-----------ETIAYSAHLRLPSNMNNEEITDVIEEAI 126
V V Q+N++L + E + Y+A L D I E
Sbjct: 81 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL--------AGAHDFISE-- 130
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
L + + ++G G+SGG+++R++IA ++ P++L D+ TS LD + ++
Sbjct: 131 ----LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 187 KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + I GRT+I H+ S+ A D + ++ G+ V G+ K
Sbjct: 186 RNMHKICK-GRTVIIIAHRLSTVKNA--DRIIVMEKGKIVEQGKHKE 229
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 16/217 (7%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKKRRLDY 79
R L + + A++G +GSGKST+ L G++ + G + N R
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNV-NKYNRNSIR 92
Query: 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA---D 136
+ V Q+ I+ ETI Y+ L + +EE+ + A +E D
Sbjct: 93 SIIGIVPQDTILFN-----ETIKYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKWD 146
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
++GN + +SGGE++R++IA +L P+++ DE TS LDS + K ++++ +
Sbjct: 147 TIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN- 204
Query: 197 RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
RT+I H+ S+ + + + LL+ G+ V G K
Sbjct: 205 RTLIIIAHRLST--ISSAESIILLNKGKIVEKGTHKD 239
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 22/204 (10%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG------GVAYVTQE 88
+ +A++G SGSGKST+ + L R V +G++ L+G R DY A V+Q
Sbjct: 370 KTVALVGRSGSGKSTIAN-LFTRFYD--VDSGSICLDGHDVR-DYKLTNLRRHFALVSQ- 424
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA---DRLIGNWHWR 145
N+ L T+ IAY+A E+I +A +E+ D +IG +
Sbjct: 425 NVHLFNDTIANNIAYAAE----GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE-NGT 479
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205
+SGG+++R++IA +L +L LDE TS LD+ + + L + + +T++ H+
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN-KTVLVIAHR 538
Query: 206 PSSEVFALFDDLFLLSGGETVYFG 229
S+ A D++ ++ GE + G
Sbjct: 539 LSTIEQA--DEILVVDEGEIIERG 560
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG-- 72
F + +L +T + +P + +A++GP+GSGK+T+++ L V G +L++G
Sbjct: 362 FSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGID 418
Query: 73 ---KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM 129
KR + V Q+ I+ T TV+E + Y +EEI + + ++
Sbjct: 419 IRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGN-----PGATDEEIKEAAKLTHSDH 472
Query: 130 GLEDCAD--RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK 187
++ + + + +S G+++ L+I L P++L LDE TS +D+ +
Sbjct: 473 FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532
Query: 188 ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230
+ + +G+T I H+ ++ A D + +L GE V G+
Sbjct: 533 AMWKLM-EGKTSIIIAHRLNTIKNA--DLIIVLRDGEIVEMGK 572
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 19/225 (8%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLD 78
+ L+G++ + ++GP+GSGKSTL++ + G L G V + N + L
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN----------EEITDVIEEAITE 128
+ G+ Q L +TV E + S +N+ EE+ + + +
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 129 MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188
+ L DR G +SGG+ K + I ++T P+++ +DEP +G+ A +
Sbjct: 141 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 189 LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + G T + H+ V D L+++ G+ + G +
Sbjct: 196 VLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 94/211 (44%), Gaps = 18/211 (8%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGN---VLLNGKKRRLD 78
+N L + L ++GPSG GK+T L +AG + + G+ L K R
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR--- 83
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
++ V Q + +TV E IA+ ++ +EI + A + +E+ +R
Sbjct: 84 --NISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR- 137
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198
+ +SGG+++R+++A I+ P +L +DEP S LD+ + +K + +
Sbjct: 138 ----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 193
Query: 199 IISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+ E + D + +++ G+ + G
Sbjct: 194 TTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 94/211 (44%), Gaps = 18/211 (8%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGN---VLLNGKKRRLD 78
+N L + L ++GPSG GK+T L +AG + + G+ L K R
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR--- 84
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
++ V Q + +TV E IA+ ++ +EI + A + +E+ +R
Sbjct: 85 --NISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR- 138
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198
+ +SGG+++R+++A I+ P +L +DEP S LD+ + +K + +
Sbjct: 139 ----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 194
Query: 199 IISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+ E + D + +++ G+ + G
Sbjct: 195 TTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 225
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 37/227 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG- 81
+L+ + + ++ ++G SGSGKSTL L R + G VL++G L
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFY--IPENGQVLIDGHDLALADPNW 74
Query: 82 ----VAYVTQENIMLGTLTVR-----------ETIAYSAHLRLPSNMNNEEITDVIEEAI 126
V V Q+N++L + E + Y+A L D I E
Sbjct: 75 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL--------AGAHDFISE-- 124
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
L + + ++G G+SGG+++R++IA ++ P++L DE TS LD + ++
Sbjct: 125 ----LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 187 KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + I GRT+I + S+ A D + ++ G+ V G+ K
Sbjct: 180 RNMHKICK-GRTVIIIAARLSTVKNA--DRIIVMEKGKIVEQGKHKE 223
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 37/227 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG- 81
+L+ + + ++ ++G SGSGKSTL L R + G VL++G L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFY--IPENGQVLIDGHDLALADPNW 80
Query: 82 ----VAYVTQENIMLGTLTVR-----------ETIAYSAHLRLPSNMNNEEITDVIEEAI 126
V V Q+N++L + E + Y+A L D I E
Sbjct: 81 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL--------AGAHDFISE-- 130
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
L + + ++G G+SGG+++R++IA ++ P++L DE TS LD + ++
Sbjct: 131 ----LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 187 KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + I GRT+I + S+ A D + ++ G+ V G+ K
Sbjct: 186 RNMHKICK-GRTVIIIAARLSTVKNA--DRIIVMEKGKIVEQGKHKE 229
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 100/228 (43%), Gaps = 25/228 (10%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLD 78
+ L+G++ + ++GP+GSGKSTL++ + G L G V + N + L
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80
Query: 79 YGGVAYVTQ-----------ENIMLGTLTVRETIAYSAHLR--LPSNMNNEEITDVIEEA 125
+ G+ Q EN+++G + E+ S + +P EE+ + +
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE---EEMVEKAFKI 137
Query: 126 ITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185
+ + L DR G +SGG+ K + I ++T P+++ +D+P +G+ A +
Sbjct: 138 LEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDI 192
Query: 186 VKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + G T + H+ V D L+++ G+ + G +
Sbjct: 193 FNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 25/228 (10%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLD 78
+ L+G++ + ++GP+GSGKSTL++ + G L G V + N + L
Sbjct: 21 KALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80
Query: 79 YGGVAYVTQ-----------ENIMLGTLTVRETIAYSAHLR--LPSNMNNEEITDVIEEA 125
+ G+ Q EN+++G + E+ S + +P EE+ + +
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE---EEMVEKAFKI 137
Query: 126 ITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185
+ + L DR G +SGG+ K + I ++T P+++ +DEP +G+ A +
Sbjct: 138 LEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 186 VKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + G T + H+ V D L+++ G+ + G +
Sbjct: 193 FNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 32/155 (20%)
Query: 41 GPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100
G +G+GK+TLL+ L +G V L GK G V Y + TVR+
Sbjct: 54 GLNGAGKTTLLNILNAY---EPATSGTVNLFGKXP----GKVGYSAE--------TVRQH 98
Query: 101 IAYSAHLRLPSNMNNEEITDV-IEEAITEMGL-EDCADRLIGNWH--------------W 144
I + +H L E + DV I A +G+ +D D + H +
Sbjct: 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQY 158
Query: 145 RG-ISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
G +S GEK+R+ IA + +PQ+L LDEP +GLD
Sbjct: 159 IGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 34/215 (15%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVA 83
LNG+T ++AV+G G GKS+LL AL + + G+V + G VA
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKGS--------VA 69
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA--ITEMGLEDCADRLIGN 141
YV Q+ + ++RE I + L P VI+ + ++ + DR
Sbjct: 70 YVPQQ-AWIQNDSLRENILFGCQLEEPY------YRSVIQACALLPDLEILPSGDRTEIG 122
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK-------ILKNIAH 194
+SGG+K+R+S+A + + + D+P S +D+ + + +LKN
Sbjct: 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN--- 179
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+T I H S D + ++SGG+ G
Sbjct: 180 --KTRILVTH--SMSYLPQVDVIIVMSGGKISEMG 210
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 12 VPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLN 71
+ + G + +L +T E ++ GP+G GK+TLL ++ L + G ++ N
Sbjct: 13 IRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYN 69
Query: 72 GKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL 131
G G + ++ +E I+ ++V + + A L +N EI D + E++ + L
Sbjct: 70 GVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-YGVKVNKNEIMDAL-ESVEVLDL 127
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK-ILK 190
+ + +G +S G +R+ +A +L ++ LD+P +D + V+K IL+
Sbjct: 128 K----KKLGE-----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 178
Query: 191 NIAHDGRTIISS 202
+ G IISS
Sbjct: 179 ILKEKGIVIISS 190
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 30/207 (14%)
Query: 33 PA-RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY------GGVAYV 85
PA + +A++G SGSGKST+ +L R + G++L++G R +Y VA V
Sbjct: 367 PAGKTVALVGRSGSGKSTIA-SLITRFYD--IDEGHILMDGHDLR-EYTLASLRNQVALV 422
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-----ITEMGLEDCADRLIG 140
+Q N+ L TV IAY+ + E+I + A I +M ++ D +IG
Sbjct: 423 SQ-NVHLFNDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKM--DNGLDTIIG 475
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+ +SGG+++R++IA +L +L LDE TS LD+ + + L + + +++
Sbjct: 476 E-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534
Query: 201 -----SSIHQPSSEVFALFDDLFLLSG 222
S+I Q + E+ + D + + G
Sbjct: 535 IAHRLSTIEQ-ADEIVVVEDGIIVERG 560
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDY 79
+LN G + IL +MG +G+GK+TL+ LAG L G + NV + +K +
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF 426
Query: 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
G TVR+ + +N + TDV++ + ++D D+ +
Sbjct: 427 PG--------------TVRQLFFKKIRGQF---LNPQFQTDVVK----PLRIDDIIDQEV 465
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN-IAHDGRT 198
+ +SGGE +R++I L + + +DEP++ LDS K+++ I H+ +T
Sbjct: 466 -----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 29/212 (13%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRLSGNV--------------VMTGNVLLNGKKRRLD 78
P ++L ++G +G GKST L LAG+ N+ G+ L N + L+
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 79 YGGVAYVTQE---NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA 135
A + + NI + + LR+ E+ + ++ I + LE+
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------EKSPEDVKRYIKILQLENVL 215
Query: 136 DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
R I +SGGE +R +I + + + DEP+S LD +I++++
Sbjct: 216 KRDI-----EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 196 GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227
+ +I H S + L D + ++ G +VY
Sbjct: 271 TKYVICVEHDLSVLDY-LSDFVCIIYGVPSVY 301
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 8/170 (4%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS-----GNVVMTGNVLLNGKKRRL 77
+L G+ + A+MGP+G+GKSTL LAG G +++ G +L
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
G+ Q + + +T+ + + +L + E +++A+ L D +
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALE---LLDWDES 134
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK 187
+ + G SGGEKKR I ++ P LDE SGLD A V +
Sbjct: 135 YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 27/209 (12%)
Query: 33 PA-RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY------GGVAYV 85
PA + +A++G SGSGKST+ +L R + G +L++G R +Y VA V
Sbjct: 367 PAGKTVALVGRSGSGKSTIA-SLITRFYD--IDEGEILMDGHDLR-EYTLASLRNQVALV 422
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-----ITEMGLEDCADRLIG 140
+Q N+ L TV IAY+ + E+I + A I +M ++ D +IG
Sbjct: 423 SQ-NVHLFNDTVANNIAYAR----TEQYSREQIEEAARMAYAMDFINKM--DNGLDTVIG 475
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+ +SGG+++R++IA +L +L LDE TS LD+ + + L + + RT +
Sbjct: 476 E-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN-RTSL 533
Query: 201 SSIHQPSSEVFALFDDLFLLSGGETVYFG 229
H+ S+ A D++ ++ G V G
Sbjct: 534 VIAHRLSTIEKA--DEIVVVEDGVIVERG 560
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 27/206 (13%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVV------------MTGNVLLNGKKRRLDYGGVA 83
++ ++GP+G+GK+T + LAG+L N+ GN L N +R L G +
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER-LKNGEIR 177
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
V + + + + + ++ + + EE + E+ LE+ DR
Sbjct: 178 PVVKPQYV-------DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR-----E 225
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGE +R++IA +L + F DEP+S LD V ++++ +A++G+ ++
Sbjct: 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFG 229
H + V D+ + GE +G
Sbjct: 286 HDLA--VLDYLSDVIHVVYGEPGVYG 309
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 29/167 (17%)
Query: 29 GYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYGGVAYV 85
G ++ ++GP+G GK+T + LAG G V V + + +Y G Y
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVY- 435
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145
E ++ +L SN E+ + +G+ D DR + +
Sbjct: 436 -------------ELLSKIDSSKLNSNFYKTEL-------LKPLGIIDLYDRNVED---- 471
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192
+SGGE +R++IA +L + LDEP++ LD V + ++++
Sbjct: 472 -LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 27/206 (13%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVV------------MTGNVLLNGKKRRLDYGGVA 83
++ ++GP+G+GK+T + LAG+L N+ GN L N +R L G +
Sbjct: 105 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER-LKNGEIR 163
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
V + + + + + ++ + + EE + E+ LE+ DR
Sbjct: 164 PVVKPQYV-------DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR-----E 211
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGE +R++IA +L + F DEP+S LD V ++++ +A++G+ ++
Sbjct: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 271
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFG 229
H + V D+ + GE +G
Sbjct: 272 HDLA--VLDYLSDVIHVVYGEPGVYG 295
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 29/167 (17%)
Query: 29 GYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYGGVAYV 85
G ++ ++GP+G GK+T + LAG G V V + + +Y G Y
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVY- 421
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145
E ++ +L SN E+ + +G+ D DR + +
Sbjct: 422 -------------ELLSKIDSSKLNSNFYKTEL-------LKPLGIIDLYDRNVED---- 457
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192
+SGGE +R++IA +L + LDEP++ LD V + ++++
Sbjct: 458 -LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 503
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 42/220 (19%)
Query: 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL--DYGGVA 83
G A+ I+ ++GP+G GK+T L G ++ + V +L+ K +R+ +Y G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTV 347
Query: 84 YVTQENIMLGTLTVRE------TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
EN L+ T + H L SN+N+
Sbjct: 348 QQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND---------------------- 385
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
+SGGE ++L IA + L LD+P+S LD + V K +K + + +
Sbjct: 386 ---------LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK 436
Query: 198 TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTF 237
+ I S + D ++ GE G A S T
Sbjct: 437 AVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTL 475
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 11/171 (6%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL 95
IL V+G +G GK+T+L LAG + N + + + + G Y + + L
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNEL 86
Query: 96 TVRETIAYSAHL-RLPSNMNNEEITDVIEEAITEMGLEDCADRLIG-----NWHWRGISG 149
+ I Y + + NE +T I E G +D L+ N +SG
Sbjct: 87 KIVHKIQYVEYASKFLKGTVNEILT-----KIDERGKKDEVKELLNMTNLWNKDANILSG 141
Query: 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
G +RL +A +L + D+P+S LD + K ++ + + I+
Sbjct: 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
IEE + +GL+ ++ + RG+SGG+K +L +A RP L+ LDEPT+ LD +
Sbjct: 874 IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 930
Query: 182 AFFVVKILK 190
+ K LK
Sbjct: 931 LGALSKALK 939
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-GRLSGNVVMTGNVLLNGKKRRLDYGG 81
LLN + AR + GP+G GKSTL A+A G++ G +
Sbjct: 444 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQ-------------EECR 490
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
YV E+ + GT + + + S + +E I++ + E G D I
Sbjct: 491 TVYV--EHDIDGTHSDTSVLDFV----FESGVGTKE---AIKDKLIEFGF---TDEXIAX 538
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK-------NIAH 194
+SGG K +L++A +L +L LDEPT+ LD+ ++V L I+H
Sbjct: 539 -PISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISH 597
Query: 195 D 195
D
Sbjct: 598 D 598
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 37 LAVMGPSGSGKSTLLDALAGRL---SGNVVMTGN 67
+AV+GP+G+GKSTL++ L G L SG V N
Sbjct: 696 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 729
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
IEE + +GL+ ++ + RG+SGG+K +L +A RP L+ LDEPT+ LD +
Sbjct: 880 IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Query: 182 AFFVVKILK 190
+ K LK
Sbjct: 937 LGALSKALK 945
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-GRLSGNVVMTGNVLLNGKKRRLDYGG 81
LLN + AR + GP+G GKSTL A+A G++ G +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQ-------------EECR 496
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
YV E+ + GT + + + S + +E I++ + E G D I
Sbjct: 497 TVYV--EHDIDGTHSDTSVLDFV----FESGVGTKE---AIKDKLIEFGF---TDEXIAX 544
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK-------NIAH 194
+SGG K +L++A +L +L LDEPT+ LD+ ++V L I+H
Sbjct: 545 -PISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISH 603
Query: 195 D 195
D
Sbjct: 604 D 604
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 37 LAVMGPSGSGKSTLLDALAGRL---SGNVVMTGN 67
+AV+GP+G+GKSTL++ L G L SG V N
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
IEE + +GL+ ++ + RG+SGG+K +L +A RP L+ LDEPT+ LD +
Sbjct: 880 IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Query: 182 AFFVVKILKNIAHDGRTIISS-----IHQPSSEVFALFDDLFLLSG 222
+ K LK +G II + + EV+A+ D SG
Sbjct: 937 LGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82
LLN + AR + GP+G GKSTL+ A+A N ++G + + V
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA-----------NGQVDGFPTQEECRTV 498
Query: 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
YV E+ + GT + + + S + +E I++ + E G D +I
Sbjct: 499 -YV--EHDIDGTHSDTSVLDFV----FESGVGTKE---AIKDKLIEFGF---TDEMIA-M 544
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK-------NIAHD 195
+SGG K +L++A +L +L LDEPT+ LD+ ++V L I+HD
Sbjct: 545 PISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHD 604
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 37 LAVMGPSGSGKSTLLDALAGRL---SGNVVMTGN 67
+AV+GP+G+GKSTL++ L G L SG V N
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN 735
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 32/167 (19%)
Query: 39 VMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR 98
++GP+GSGK+TLL A++G L +GN+ +NG + R +R
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP----YSGNIFINGMEVR-------------------KIR 71
Query: 99 ETIAYSAHL----RLPSNMNN-----EEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149
I YS +L + +N+ EE+ + + EM I +S
Sbjct: 72 NYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSA 131
Query: 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
G+ + +L + ++P+++ LDEP +D+A + + +K +G
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 32/192 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG--------KK 74
+L ++ P + + ++G +GSGKSTLL A L+ G + ++G ++
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITLEQ 91
Query: 75 RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
R +G V + + + + T R+ + +A +++EI V +E +GL
Sbjct: 92 WRKAFG----VIPQKVFIFSGTFRKNLDPNA------AHSDQEIWKVADE----VGLRSV 137
Query: 135 ADRLIGNWHWRGISGG------EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188
++ G + + GG K+ + +A +L++ ++L LDEP++ LD + +
Sbjct: 138 IEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRT 197
Query: 189 LKNIAHDGRTII 200
LK D I+
Sbjct: 198 LKQAFADCTVIL 209
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQE 88
E ++LAV G +G+GK++LL + G L G + +G + + + G + +E
Sbjct: 44 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI----KE 99
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
NI+ G ++Y + R S + + +EE I++ + D ++ +S
Sbjct: 100 NIIFG-------VSYDEY-RYRSVIKACQ----LEEDISKFAEK---DNIVLGEGGITLS 144
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIISSIHQP 206
GG++ R+S+A + L LD P LD + F + K +A+ R +++S
Sbjct: 145 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS---- 200
Query: 207 SSEVFALFDDLFLLSGGETVYFG 229
E D + +L G + ++G
Sbjct: 201 KMEHLKKADKILILHEGSSYFYG 223
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQE 88
E ++LAV G +G+GK++LL + G L G + +G + + + G + +E
Sbjct: 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI----KE 87
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
NI+ G ++Y + R S + + +EE I++ + D ++ +S
Sbjct: 88 NIIFG-------VSYDEY-RYRSVIKACQ----LEEDISKFAEK---DNIVLGEGGITLS 132
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIISSIHQP 206
GG++ R+S+A + L LD P LD + F + K +A+ R +++S
Sbjct: 133 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS---- 188
Query: 207 SSEVFALFDDLFLLSGGETVYFG 229
E D + +L G + ++G
Sbjct: 189 KMEHLKKADKILILHEGSSYFYG 211
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 47/209 (22%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-I 90
E +LA+ G +GSGK++LL + G L + G + +G+ V++ +Q + I
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------VSFCSQFSWI 110
Query: 91 MLGTLTVRETIAYSA---HLRLPSNMN----NEEITDVIEEAITEMGLEDCADRLIGNWH 143
M G T++E I + R S + ++IT E+ T +G
Sbjct: 111 MPG--TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT-------- 160
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIIS 201
+SGG++ R+S+A + L LD P LD + F + K +A+ R +++
Sbjct: 161 ---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 202 S-------------IHQPSSEVFALFDDL 217
S +HQ SS + F +L
Sbjct: 218 SKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 47/209 (22%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-I 90
E +LA+ G +GSGK++LL + G L + G + +G+ V++ +Q + I
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------VSFCSQFSWI 110
Query: 91 MLGTLTVRETIAYSA---HLRLPSNMN----NEEITDVIEEAITEMGLEDCADRLIGNWH 143
M G T++E I + R S + ++IT E+ T +G
Sbjct: 111 MPG--TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT-------- 160
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIIS 201
+SGG++ R+S+A + L LD P LD + F + K +A+ R +++
Sbjct: 161 ---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 202 S-------------IHQPSSEVFALFDDL 217
S +HQ SS + F +L
Sbjct: 218 SKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 46/208 (22%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-I 90
E +LA+ G +GSGK++LL + G L + G + +G+ V++ +Q + I
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------VSFCSQFSWI 110
Query: 91 MLGTLTVRETI------AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
M G T++E I Y + + ++IT E+ T +G
Sbjct: 111 MPG--TIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT--------- 159
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIISS 202
+SGG++ R+S+A + L LD P LD + F + K +A+ R +++S
Sbjct: 160 --LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 217
Query: 203 -------------IHQPSSEVFALFDDL 217
+HQ SS + F +L
Sbjct: 218 KMEHLRKADKILILHQGSSYFYGTFSEL 245
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 47/209 (22%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-I 90
E +LA+ G +GSGK++LL + G L + G + +G+ V++ +Q + I
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------VSFCSQFSWI 110
Query: 91 MLGTLTVRETI-------AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
M G T++E I Y + + ++IT E+ T +G
Sbjct: 111 MPG--TIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT-------- 160
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIIS 201
+SGG++ R+S+A + L LD P LD + F + K +A+ R +++
Sbjct: 161 ---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 202 S-------------IHQPSSEVFALFDDL 217
S +HQ SS + F +L
Sbjct: 218 SKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 47/209 (22%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-I 90
E +LA+ G +GSGK++LL + G L + G + +G+ V++ +Q + I
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------VSFCSQFSWI 110
Query: 91 MLGTLTVRETI-------AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
M G T++E I Y + + ++IT E+ T +G
Sbjct: 111 MPG--TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT-------- 160
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIIS 201
+SGG++ R+S+A + L LD P LD + F + K +A+ R +++
Sbjct: 161 ---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 202 S-------------IHQPSSEVFALFDDL 217
S +HQ SS + F +L
Sbjct: 218 SKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 37/207 (17%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-I 90
E ++LAV G +G+GK++LL + G L + G + +G+ +++ +Q + I
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGR--------ISFCSQNSWI 110
Query: 91 MLGTLTVRETI------AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
M G T++E I Y + + E+I+ E+ D ++
Sbjct: 111 MPG--TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEK-----------DNIVLGEGG 157
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIISS 202
+SGG++ R+S+A + L LD P LD + F + K +A+ R +++S
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFG 229
E D + +L G + ++G
Sbjct: 218 ----KMEHLKKADKILILHEGSSYFYG 240
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 503 GAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFD 556
GAG ++MM G L P K+ I++ + +W + G K ++IG+ +D
Sbjct: 74 GAGKTSLLMMIMG--ELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYD 125
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 37/207 (17%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-I 90
E ++LAV G +G+GK++LL + G L + G + +G+ +++ +Q + I
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGR--------ISFCSQNSWI 110
Query: 91 MLGTLTVRETI------AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
M G T++E I Y + + E+I+ E+ D ++
Sbjct: 111 MPG--TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEK-----------DNIVLGEGG 157
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIISS 202
+SGG++ R+S+A + L LD P LD + F + K +A+ R +++S
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFG 229
E D + +L G + ++G
Sbjct: 218 ----KMEHLKKADKILILHEGSSYFYG 240
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 503 GAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFD 556
GAG ++MM G L P K+ I++ + +W + G K ++IG+ +D
Sbjct: 74 GAGKTSLLMMIMG--ELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYD 125
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 37/207 (17%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-I 90
E ++LAV G +G+GK++LL + G L + GK + G +++ +Q + I
Sbjct: 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPS---------EGKIKH--SGRISFCSQFSWI 80
Query: 91 MLGTLTVRETI------AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
M GT ++E I Y + + E+I+ E+ D ++
Sbjct: 81 MPGT--IKENIIGVSYDEYRYRSVIKACQLEEDISKFAEK-----------DNIVLGEGG 127
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIISS 202
+SGG++ R+S+A + L LD P LD + F + K +A+ R +++S
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFG 229
E D + +L G + ++G
Sbjct: 188 ----KMEHLKKADKILILHEGSSYFYG 210
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 503 GAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFD 556
GAG ++MM G L P K+ I++ + +W + G K ++IG+ +D
Sbjct: 44 GAGKTSLLMMIMG--ELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIGVSYD 95
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQE 88
E ++LAV G +G+GK++LL + G L G + +G + + + G + +E
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI----KE 117
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
NI+ G ++Y + R S + + +EE I++ + D ++ +S
Sbjct: 118 NIIAG-------VSYDEY-RYRSVIKACQ----LEEDISKFAEK---DNIVLGEGGITLS 162
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIISSIHQP 206
GG++ R+S+A + L LD P LD + F + K +A+ R +++S
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS---- 218
Query: 207 SSEVFALFDDLFLLSGGETVYFG 229
E D + +L G + ++G
Sbjct: 219 KMEHLKKADKILILHEGSSYFYG 241
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 147 ISGGEKKRLSIALEILTRPQ--LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH 204
+SGGE +R+ +A +I +R L LDEP+ GL ++ LK++ G T+I H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 205 QPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236
+ + A D L + G ++ GE +A T
Sbjct: 263 DEDTMLAA--DYLIDIGPGAGIHGGEVVAAGT 292
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 147 ISGGEKKRLSIALEILTRPQ---LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGE +R+ +A E+ R L LDEPT+GL ++ +L + +G T++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 204 HQ 205
H
Sbjct: 604 HN 605
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 147 ISGGEKKRLSIALEILTRPQ--LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH 204
+SGGE +R+ +A +I +R L LDEP+ GL ++ LK++ G T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 205 QPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236
+ + A D L + G ++ GE +A T
Sbjct: 565 DEDTMLAA--DYLIDIGPGAGIHGGEVVAAGT 594
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 147 ISGGEKKRLSIALEILTRPQ---LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGE +R+ +A E+ R L LDEPT+GL ++ +L + +G T++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 204 H 204
H
Sbjct: 906 H 906
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 147 ISGGEKKRLSIALEILTRPQ---LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGE +R+ +A E+ R L LDEPT GL +V++L + G T+I
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 204 HQ 205
H
Sbjct: 866 HN 867
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 147 ISGGEKKRLSIALEI---LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGE +R+ +A +I LT + LDEPT GL ++K LK + G T+I
Sbjct: 465 LSGGESQRIRLATQIGSGLT-GVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523
Query: 204 HQ 205
H
Sbjct: 524 HD 525
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 147 ISGGEKKRLSIALEILTRPQ--LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH 204
+SGGE +R+ +A +I +R L LDEP+ GL ++ LK+ G T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 205 QPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236
+ + A D L + G ++ GE +A T
Sbjct: 565 DEDTXLAA--DYLIDIGPGAGIHGGEVVAAGT 594
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 147 ISGGEKKRLSIALEILTRPQ---LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGE +R+ +A E+ R L LDEPT+GL ++ +L + +G T++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 204 H 204
H
Sbjct: 906 H 906
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 147 ISGGEKKRLSIALEILTRPQ---LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGE +R+ +A E+ + + LDEPT+GL A + + L + G T+I+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 204 HQ 205
H+
Sbjct: 791 HK 792
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 147 ISGGEKKRLSIALEILTRPQLLF-----LDEPTSGLDSAAAFFVVKILKNIAHDGRTIIS 201
+S GE +RL +A ++ + LF LDEP++GL A ++ L+N+ G ++
Sbjct: 380 LSPGELQRLRLATQLYSN---LFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFV 436
Query: 202 SIH 204
H
Sbjct: 437 VEH 439
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 138 LIGNWH----WRGISGGEKKRLSIAL-----EILT-RPQLLFLDEPTSGLDSAAAFFVVK 187
+I +W RG+SGGE+ +SI+L E+ + R F+DE S LD+ +
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS 326
Query: 188 ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
+LK + + I+ H E FD ++GG V
Sbjct: 327 VLKELERLNKVIVFITH--DREFSEAFDRKLRITGGVVV 363
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGN 61
I V GP+G+GKS+L +A++ L GN
Sbjct: 25 ITVVEGPNGAGKSSLFEAISFALFGN 50
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 28/203 (13%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQE 88
E ++LAV G +G+GK++LL + G L G + +G + + + G + +E
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI----KE 117
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
NI+ G ++Y + R S + + +EE I++ + D ++ +S
Sbjct: 118 NIIFG-------VSYDEY-RYRSVIKACQ----LEEDISKFAEK---DNIVLGEGGITLS 162
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIISSIHQP 206
G++ ++S+A + L LD P LD + F + K +A+ R +++S
Sbjct: 163 EGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS---- 218
Query: 207 SSEVFALFDDLFLLSGGETVYFG 229
E D + +L G + ++G
Sbjct: 219 KMEHLKKADKILILHEGSSYFYG 241
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 138 LIGNWH----WRGISGGEKKRLSIAL-----EILT-RPQLLFLDEPTSGLDSAAAFFVVK 187
+I +W RG+SGGE+ +SI+L E+ + R F+DE S LD+ +
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS 326
Query: 188 ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
+LK + + I+ H E FD ++GG V
Sbjct: 327 VLKELERLNKVIVFITH--DREFSEAFDRKLRITGGVVV 363
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGN 61
I V GP+G+GKS+L +A++ L GN
Sbjct: 25 ITVVEGPNGAGKSSLFEAISFALFGN 50
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 147 ISGGEKKRLSIALEILTRPQ---LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGE +R+ +A E+ R + LDEPT+GL ++ ++ + G T+I
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 204 HQ 205
H
Sbjct: 924 HN 925
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 37/207 (17%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-I 90
E ++LAV G +G+GK++LL + G L + G + +G+ +++ +Q + I
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGR--------ISFCSQFSWI 110
Query: 91 MLGTLTVRETI------AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
M G T++E I Y + + E+I+ E+ D ++
Sbjct: 111 MPG--TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEK-----------DNIVLGEGG 157
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIISS 202
+S G++ ++S+A + L LD P LD + F + K +A+ R +++S
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFG 229
E D + +L G + ++G
Sbjct: 218 ----KMEHLKKADKILILHEGSSYFYG 240
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 503 GAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFD 556
GAG ++MM G L P K+ I++ + +W + G K ++IG+ +D
Sbjct: 74 GAGKTSLLMMIMG--ELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIGVSYD 125
>pdb|3G17|A Chain A, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|B Chain B, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|C Chain C, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|D Chain D, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|E Chain E, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|F Chain F, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|G Chain G, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|H Chain H, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
Length = 294
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 27/179 (15%)
Query: 428 GVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMM 487
V I SLP T + +ITYY V P + D+T++ VI
Sbjct: 12 AVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVI----- 66
Query: 488 MIASMVPNYLTGIIIGAGYLG-----IMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWAL 542
I ++ + L +I YL I++ +GY +L IP + YI+
Sbjct: 67 -IIAVKTHQLDAVIPHLTYLAHEDTLIILAQNGYGQL-EHIPFKNVCQAVVYIS------ 118
Query: 543 QGAYKNDLIG--------LEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAI 593
G K D++ ++ +A+ R L D + +L N+ ++ W+ L V + I
Sbjct: 119 -GQKKGDVVTHFRDYQLRIQDNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGI 176
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 24 LNGLTGYAEPA------RILAVMGPSGSGKSTLLDAL 54
L G + P+ R+ A++GP+GSGKS ++DA+
Sbjct: 8 LKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
>pdb|3ROS|A Chain A, Crystal Structure Of Nad-Dependent Aldehyde Dehydrogenase
From Lactobacillus Acidophilus
Length = 484
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 177 LDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDD 216
+DS AFF IL +IA D + P +EVF + DD
Sbjct: 337 IDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDD 376
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 287 RNLPTS-EIKGILI--KKYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLS 341
R P+S +IK +L+ +K+RC T + R ++ IEG +F + S WK+LS
Sbjct: 238 RKDPSSVDIKKVLLDMRKFRCQLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELS 295
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
Length = 287
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 558 IDRDGPKLKGDVIL----KTMLGMNLDRSKWWDLAVVVAILISYRVIFFA 603
+D DG +LKGD+ +T LD + WDL+V A+ + R I A
Sbjct: 190 VDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAA 239
>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 287
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 558 IDRDGPKLKGDVIL----KTMLGMNLDRSKWWDLAVVVAILISYRVIFFA 603
+D DG +LKGD+ +T LD + WDL+V A+ + R I A
Sbjct: 190 VDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAA 239
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 25/125 (20%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVV--------------------MTGNVLLNGKKR 75
++ V G G+GKST+ + L + +VV G+VL +GK
Sbjct: 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVN 73
Query: 76 RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE-MGLEDC 134
R G+ + ++EN+ L V R+ +N VIE A+ + GL+
Sbjct: 74 RKKLAGIVFESRENLKKLELLVHPLXKK----RVQEIINKTSGLIVIEAALLKRXGLDQL 129
Query: 135 ADRLI 139
D +I
Sbjct: 130 CDHVI 134
>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1FNT|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1VSY|L Chain L, Proteasome Activator Complex
pdb|1VSY|Z Chain Z, Proteasome Activator Complex
pdb|3L5Q|P Chain P, Proteasome Activator Complex
pdb|3L5Q|2 Chain 2, Proteasome Activator Complex
Length = 212
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 558 IDRDGPKLKGDVIL----KTMLGMNLDRSKWWDLAVVVAILISYRVIFFA 603
+D DG +LKGD+ +T LD + WDL+V A+ + R I A
Sbjct: 115 VDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAA 164
>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Y Chain Y, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|K Chain K, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|R Chain R, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|K Chain K, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Y Chain Y, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|K Chain K, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Y Chain Y, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|K Chain K, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Y Chain Y, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|K Chain K, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Y Chain Y, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|K Chain K, Proteasome Inhibition By Fellutamide B
pdb|3D29|Y Chain Y, Proteasome Inhibition By Fellutamide B
pdb|3E47|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|K Chain K, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Y Chain Y, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|K Chain K, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Y Chain Y, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|K Chain K, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Y Chain Y, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|K Chain K, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Y Chain Y, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|K Chain K, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Y Chain Y, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|K Chain K, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Y Chain Y, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|1G65|K Chain K, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Y Chain Y, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|3UN4|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|K Chain K, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Y Chain Y, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|L Chain L, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|K Chain K, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Y Chain Y, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|K Chain K, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Y Chain Y, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 212
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 558 IDRDGPKLKGDVIL----KTMLGMNLDRSKWWDLAVVVAILISYRVIFFA 603
+D DG +LKGD+ +T LD + WDL+V A+ + R I A
Sbjct: 115 VDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAA 164
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 31 AEPARILAVMGPSGSGKSTLLDALA 55
EP R + VMG SGSGK+T+ +A
Sbjct: 26 GEPTRHVVVMGVSGSGKTTIAHGVA 50
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV 68
A ++ V GPSG+GK TL ALA L+ ++ +G +
Sbjct: 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61
>pdb|1H9J|A Chain A, Two Crystal Structures Of The Cytoplasmic
Molybdate-Binding Protein Modg Suggest A Novel
Cooperative Binding Mechanism And Provide Insights Into
Ligand-Binding Specificity. Phosphate-Grown Form With
Molybdate And Phosphate Bound
pdb|1H9K|A Chain A, Two Crystal Structures Of The Cytoplasmic
Molybdate-Binding Protein Modg Suggest A Novel
Cooperative Binding Mechanism And Provide Insights Into
Ligand-Binding Specificity. Phosphate-Grown Form With
Tungstate And Phosphate Bound
pdb|1H9M|A Chain A, Two Crystal Structures Of The Cytoplasmic
Molybdate-Binding Protein Modg Suggest A Novel
Cooperative Binding Mechanism And Provide Insights Into
Ligand-Binding Specificity. Peg-Grown Form With
Molybdate Bound
pdb|1H9M|B Chain B, Two Crystal Structures Of The Cytoplasmic
Molybdate-Binding Protein Modg Suggest A Novel
Cooperative Binding Mechanism And Provide Insights Into
Ligand-Binding Specificity. Peg-Grown Form With
Molybdate Bound
Length = 145
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 85 VTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE 132
++ NI+ GT+ ET A +A + L E + V +EA+ E+GL+
Sbjct: 78 LSARNILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVAELGLK 125
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 29 GYAEPARILAVMGPSGSGKSTLLDALA 55
G+ E + +++GP+GSGKS ++DA++
Sbjct: 22 GFGE-SNFTSIIGPNGSGKSNMMDAIS 47
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND
STATE
Length = 382
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGN 61
I V GP+G+GKS+L +A++ L GN
Sbjct: 42 ITVVEGPNGAGKSSLFEAISFALFGN 67
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTG 66
++AV GPSG+GKS++ LA +L + + TG
Sbjct: 6 VVAVDGPSGTGKSSVAKELARQLGASYLDTG 36
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 36 ILAVMGPSGSGKSTLLDAL 54
+ AV+GP+GSGKS + DA+
Sbjct: 26 VTAVVGPNGSGKSNITDAI 44
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 28 TGYAEPARILAVMGPSGSGKSTLLDALAG 56
TG PAR L + GP G+GK+ L A+A
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAA 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,502,200
Number of Sequences: 62578
Number of extensions: 813462
Number of successful extensions: 2259
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2014
Number of HSP's gapped (non-prelim): 179
length of query: 661
length of database: 14,973,337
effective HSP length: 105
effective length of query: 556
effective length of database: 8,402,647
effective search space: 4671871732
effective search space used: 4671871732
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)