Query 045930
Match_columns 661
No_of_seqs 464 out of 2828
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:58:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 2E-112 5E-117 970.5 61.3 578 2-611 25-610 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 1E-105 3E-110 923.0 65.0 565 20-610 37-614 (617)
3 PLN03211 ABC transporter G-25; 100.0 7E-105 1E-109 917.8 65.1 573 2-608 39-657 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 1E-103 3E-108 969.2 63.9 571 20-610 73-695 (1394)
5 PLN03140 ABC transporter G fam 100.0 1E-102 2E-107 957.7 68.2 578 2-610 867-1467(1470)
6 PLN03140 ABC transporter G fam 100.0 4E-101 8E-106 944.2 60.6 572 20-609 177-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 8E-100 2E-104 935.4 65.6 574 2-610 759-1391(1394)
8 KOG0065 Pleiotropic drug resis 100.0 6.4E-99 1E-103 873.3 40.8 576 3-612 788-1386(1391)
9 KOG0065 Pleiotropic drug resis 100.0 2.9E-94 6.2E-99 834.6 43.9 573 21-611 128-732 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 5.7E-51 1.2E-55 395.1 22.6 216 1-233 1-222 (240)
11 COG1135 AbcC ABC-type metal io 100.0 9.1E-49 2E-53 397.5 22.1 218 3-233 2-228 (339)
12 COG1131 CcmA ABC-type multidru 100.0 4.8E-48 1E-52 405.9 25.8 221 2-239 4-229 (293)
13 COG1120 FepC ABC-type cobalami 100.0 5.4E-48 1.2E-52 391.6 22.5 221 1-236 1-228 (258)
14 COG1125 OpuBA ABC-type proline 100.0 6.5E-48 1.4E-52 380.6 21.4 216 3-236 2-225 (309)
15 COG1136 SalX ABC-type antimicr 100.0 2.1E-47 4.6E-52 380.2 25.1 208 3-225 2-220 (226)
16 COG1116 TauB ABC-type nitrate/ 100.0 1.3E-47 2.8E-52 382.1 23.4 204 2-223 3-207 (248)
17 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.4E-47 9.5E-52 383.1 24.9 218 2-236 4-227 (254)
18 COG1127 Ttg2A ABC-type transpo 100.0 3.8E-47 8.1E-52 373.8 22.1 217 2-235 8-234 (263)
19 COG3839 MalK ABC-type sugar tr 100.0 5.2E-47 1.1E-51 398.2 23.7 217 1-235 2-222 (338)
20 COG3638 ABC-type phosphate/pho 100.0 5.9E-47 1.3E-51 371.5 20.1 222 1-236 2-237 (258)
21 COG4555 NatA ABC-type Na+ tran 100.0 3.3E-47 7.2E-52 363.9 16.7 215 3-234 2-220 (245)
22 COG3842 PotA ABC-type spermidi 100.0 1.3E-46 2.9E-51 397.1 21.2 216 2-234 5-224 (352)
23 COG1118 CysA ABC-type sulfate/ 100.0 2.9E-46 6.2E-51 378.4 19.9 219 1-235 1-226 (345)
24 COG2884 FtsE Predicted ATPase 100.0 8.8E-46 1.9E-50 351.4 21.1 211 3-230 2-220 (223)
25 PRK13537 nodulation ABC transp 100.0 3.6E-45 7.8E-50 387.1 27.1 216 2-235 7-226 (306)
26 TIGR02314 ABC_MetN D-methionin 100.0 6.4E-45 1.4E-49 389.4 27.7 218 3-234 2-228 (343)
27 PRK11650 ugpC glycerol-3-phosp 100.0 8.7E-45 1.9E-49 391.0 27.6 216 2-234 3-222 (356)
28 TIGR03265 PhnT2 putative 2-ami 100.0 1.1E-44 2.4E-49 389.7 27.6 215 2-234 4-222 (353)
29 cd03261 ABC_Org_Solvent_Resist 100.0 1.1E-44 2.4E-49 369.5 25.8 214 3-233 1-223 (235)
30 PRK11432 fbpC ferric transport 100.0 2E-44 4.3E-49 387.3 27.5 215 2-234 6-224 (351)
31 COG1124 DppF ABC-type dipeptid 100.0 9.7E-45 2.1E-49 358.4 22.5 220 1-236 2-231 (252)
32 COG1117 PstB ABC-type phosphat 100.0 3.8E-45 8.3E-50 352.9 18.7 232 2-255 7-248 (253)
33 TIGR03258 PhnT 2-aminoethylpho 100.0 2.7E-44 5.9E-49 387.4 27.3 215 2-234 5-226 (362)
34 PRK10851 sulfate/thiosulfate t 100.0 3.8E-44 8.2E-49 385.6 27.7 219 1-234 1-224 (353)
35 PRK13536 nodulation factor exp 100.0 4.6E-44 1E-48 383.1 27.8 217 2-236 41-261 (340)
36 TIGR00960 3a0501s02 Type II (G 100.0 4.3E-44 9.4E-49 360.4 25.2 207 3-225 2-216 (216)
37 cd03259 ABC_Carb_Solutes_like 100.0 5.3E-44 1.1E-48 359.0 25.7 209 3-229 1-213 (213)
38 cd03293 ABC_NrtD_SsuB_transpor 100.0 9.6E-44 2.1E-48 359.0 27.4 216 3-232 1-219 (220)
39 cd03296 ABC_CysA_sulfate_impor 100.0 7.1E-44 1.5E-48 364.5 26.7 218 1-233 1-223 (239)
40 cd03265 ABC_DrrA DrrA is the A 100.0 6.1E-44 1.3E-48 360.5 25.6 213 3-233 1-218 (220)
41 TIGR01288 nodI ATP-binding ABC 100.0 7.5E-44 1.6E-48 376.9 27.4 217 1-235 3-223 (303)
42 COG1122 CbiO ABC-type cobalt t 100.0 3E-44 6.6E-49 363.5 22.9 216 2-234 3-226 (235)
43 PRK09452 potA putrescine/sperm 100.0 9.5E-44 2.1E-48 384.7 27.7 215 2-234 14-232 (375)
44 PRK11000 maltose/maltodextrin 100.0 1.5E-43 3.2E-48 383.6 27.7 215 2-234 3-221 (369)
45 TIGR03522 GldA_ABC_ATP gliding 100.0 1.5E-43 3.3E-48 374.2 27.1 217 1-236 1-221 (301)
46 PRK13637 cbiO cobalt transport 100.0 2.5E-43 5.5E-48 370.1 28.5 221 1-234 1-232 (287)
47 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-43 2.7E-48 360.8 25.3 213 3-233 1-219 (232)
48 cd03301 ABC_MalK_N The N-termi 100.0 2E-43 4.4E-48 354.7 26.4 209 3-229 1-213 (213)
49 cd03219 ABC_Mj1267_LivG_branch 100.0 1.3E-43 2.9E-48 361.6 25.3 216 3-233 1-229 (236)
50 PRK11153 metN DL-methionine tr 100.0 2E-43 4.4E-48 379.3 27.6 218 3-234 2-228 (343)
51 TIGR01188 drrA daunorubicin re 100.0 1.1E-43 2.4E-48 375.4 24.6 203 21-235 6-212 (302)
52 PRK11607 potG putrescine trans 100.0 2.4E-43 5.3E-48 382.0 27.7 215 2-234 19-237 (377)
53 COG1137 YhbG ABC-type (unclass 100.0 3.5E-45 7.5E-50 349.7 11.6 218 2-235 4-227 (243)
54 PRK13643 cbiO cobalt transport 100.0 2.6E-43 5.7E-48 370.1 27.0 231 3-247 2-247 (288)
55 cd03269 ABC_putative_ATPase Th 100.0 2.2E-43 4.8E-48 353.7 25.3 209 3-229 1-210 (210)
56 cd03258 ABC_MetN_methionine_tr 100.0 2.2E-43 4.8E-48 359.4 25.3 217 3-233 2-227 (233)
57 cd03266 ABC_NatA_sodium_export 100.0 3.3E-43 7.1E-48 354.4 25.9 213 3-229 2-218 (218)
58 PRK13634 cbiO cobalt transport 100.0 4.7E-43 1E-47 368.5 27.9 220 1-234 1-233 (290)
59 cd03263 ABC_subfamily_A The AB 100.0 3.6E-43 7.8E-48 354.6 25.0 214 3-233 1-218 (220)
60 cd03260 ABC_PstB_phosphate_tra 100.0 3.6E-43 7.8E-48 356.4 25.2 214 3-233 1-226 (227)
61 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.2E-43 6.9E-48 354.5 24.4 208 3-225 1-218 (218)
62 PRK13651 cobalt transporter AT 100.0 6.6E-43 1.4E-47 369.4 27.7 221 1-234 1-252 (305)
63 COG3840 ThiQ ABC-type thiamine 100.0 1.1E-43 2.3E-48 334.6 18.6 211 3-233 2-216 (231)
64 cd03256 ABC_PhnC_transporter A 100.0 5.3E-43 1.1E-47 358.1 24.9 217 3-233 1-231 (241)
65 PRK13647 cbiO cobalt transport 100.0 1.4E-42 3E-47 362.2 28.3 215 2-233 4-224 (274)
66 PRK09493 glnQ glutamine ABC tr 100.0 1E-42 2.2E-47 356.1 26.5 214 3-233 2-222 (240)
67 cd03224 ABC_TM1139_LivF_branch 100.0 4.9E-43 1.1E-47 354.0 23.7 211 3-233 1-218 (222)
68 TIGR02673 FtsE cell division A 100.0 9.4E-43 2E-47 350.1 25.5 205 3-224 2-214 (214)
69 PRK11629 lolD lipoprotein tran 100.0 2.3E-42 4.9E-47 352.1 28.5 215 2-231 5-229 (233)
70 cd03292 ABC_FtsE_transporter F 100.0 9.3E-43 2E-47 350.0 25.2 206 3-225 1-214 (214)
71 cd03234 ABCG_White The White s 100.0 1.4E-42 3.1E-47 351.9 26.6 221 2-229 3-226 (226)
72 PRK11124 artP arginine transpo 100.0 1.2E-42 2.6E-47 356.0 26.1 214 1-232 1-226 (242)
73 cd03268 ABC_BcrA_bacitracin_re 100.0 7.7E-43 1.7E-47 349.3 24.1 205 3-229 1-208 (208)
74 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1E-42 2.2E-47 356.7 25.3 214 3-233 1-222 (242)
75 PRK11264 putative amino-acid A 100.0 1.2E-42 2.7E-47 357.6 26.0 215 2-233 3-230 (250)
76 COG0411 LivG ABC-type branched 100.0 1.4E-43 3E-48 350.5 18.0 218 3-235 5-238 (250)
77 PRK13650 cbiO cobalt transport 100.0 1.6E-42 3.4E-47 362.7 26.8 217 2-234 4-227 (279)
78 TIGR02315 ABC_phnC phosphonate 100.0 6.6E-43 1.4E-47 358.0 23.5 217 3-233 2-232 (243)
79 TIGR01186 proV glycine betaine 100.0 9.9E-43 2.1E-47 374.6 25.9 203 20-234 5-217 (363)
80 PRK11248 tauB taurine transpor 100.0 2.9E-42 6.3E-47 356.1 28.4 212 3-232 2-216 (255)
81 PRK13646 cbiO cobalt transport 100.0 1.5E-42 3.2E-47 364.2 26.4 220 1-234 1-233 (286)
82 PRK10895 lipopolysaccharide AB 100.0 1.2E-42 2.5E-47 356.0 25.0 215 2-233 3-223 (241)
83 PRK13631 cbiO cobalt transport 100.0 2.4E-42 5.1E-47 367.4 28.0 231 2-246 21-278 (320)
84 PRK11831 putative ABC transpor 100.0 1.7E-42 3.7E-47 360.6 26.3 215 2-233 7-230 (269)
85 PRK09536 btuD corrinoid ABC tr 100.0 1.3E-42 2.7E-47 378.2 26.2 218 2-234 3-226 (402)
86 PRK13641 cbiO cobalt transport 100.0 2.3E-42 5E-47 362.9 27.3 220 1-234 1-232 (287)
87 cd03264 ABC_drug_resistance_li 100.0 1.5E-42 3.3E-47 348.0 24.6 207 3-229 1-211 (211)
88 PRK10908 cell division protein 100.0 3.2E-42 6.8E-47 348.4 26.6 207 3-226 2-216 (222)
89 PRK13649 cbiO cobalt transport 100.0 3.9E-42 8.5E-47 359.9 28.1 220 1-234 1-232 (280)
90 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.5E-42 7.5E-47 351.4 26.7 212 3-233 2-218 (236)
91 PRK11247 ssuB aliphatic sulfon 100.0 2.8E-42 6.1E-47 356.3 26.3 207 2-232 12-219 (257)
92 TIGR02211 LolD_lipo_ex lipopro 100.0 4.4E-42 9.6E-47 346.9 26.6 209 3-226 2-220 (221)
93 TIGR00972 3a0107s01c2 phosphat 100.0 3.5E-42 7.5E-47 353.8 26.2 215 3-233 2-229 (247)
94 COG4152 ABC-type uncharacteriz 100.0 3.4E-43 7.4E-48 345.1 17.6 221 1-239 1-222 (300)
95 COG0410 LivF ABC-type branched 100.0 1.4E-42 3E-47 341.0 21.9 215 2-235 3-225 (237)
96 PRK15079 oligopeptide ABC tran 100.0 4.2E-42 9.1E-47 366.9 27.4 223 2-234 8-249 (331)
97 cd03262 ABC_HisP_GlnQ_permease 100.0 3E-42 6.4E-47 346.1 24.3 206 3-225 1-213 (213)
98 PRK13636 cbiO cobalt transport 100.0 5.3E-42 1.1E-46 359.4 27.0 228 2-246 5-244 (283)
99 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.7E-42 3.7E-47 360.5 23.1 201 21-233 37-247 (269)
100 PRK11614 livF leucine/isoleuci 100.0 2.9E-42 6.2E-47 352.2 24.2 213 2-234 5-224 (237)
101 cd03226 ABC_cobalt_CbiO_domain 100.0 1.9E-42 4.2E-47 345.7 22.4 201 5-226 2-205 (205)
102 PRK10619 histidine/lysine/argi 100.0 6E-42 1.3E-46 354.1 26.9 214 2-233 5-238 (257)
103 COG0444 DppD ABC-type dipeptid 100.0 2.4E-42 5.2E-47 355.5 23.6 225 3-234 2-241 (316)
104 PRK13638 cbiO cobalt transport 100.0 6.2E-42 1.3E-46 356.8 26.4 214 3-234 2-223 (271)
105 PRK13635 cbiO cobalt transport 100.0 7.7E-42 1.7E-46 357.4 27.1 215 3-234 6-227 (279)
106 cd03225 ABC_cobalt_CbiO_domain 100.0 4.2E-42 9.2E-47 344.6 24.1 205 4-224 1-211 (211)
107 cd03235 ABC_Metallic_Cations A 100.0 2.2E-42 4.8E-47 347.2 22.0 209 5-229 2-213 (213)
108 cd03257 ABC_NikE_OppD_transpor 100.0 7.3E-42 1.6E-46 346.7 25.9 214 3-229 2-228 (228)
109 TIGR03411 urea_trans_UrtD urea 100.0 6.3E-42 1.4E-46 350.6 25.5 216 2-233 2-228 (242)
110 TIGR01978 sufC FeS assembly AT 100.0 7.2E-42 1.6E-46 350.2 25.8 217 3-233 1-231 (243)
111 PRK13548 hmuV hemin importer A 100.0 8.6E-42 1.9E-46 353.2 26.5 215 1-233 1-227 (258)
112 PRK11300 livG leucine/isoleuci 100.0 6.9E-42 1.5E-46 353.0 25.7 217 2-233 5-240 (255)
113 TIGR03005 ectoine_ehuA ectoine 100.0 8.1E-42 1.7E-46 352.1 26.1 213 3-232 1-232 (252)
114 PRK13644 cbiO cobalt transport 100.0 6.1E-42 1.3E-46 357.4 24.9 214 3-234 2-222 (274)
115 PRK11231 fecE iron-dicitrate t 100.0 6.6E-42 1.4E-46 353.4 24.9 218 1-233 1-224 (255)
116 PRK13639 cbiO cobalt transport 100.0 1.8E-41 3.9E-46 354.0 28.1 215 3-234 2-224 (275)
117 PRK13652 cbiO cobalt transport 100.0 1.7E-41 3.7E-46 354.6 27.7 216 2-234 3-225 (277)
118 PRK11022 dppD dipeptide transp 100.0 1.7E-41 3.7E-46 361.9 27.8 223 2-234 3-241 (326)
119 PRK14268 phosphate ABC transpo 100.0 1.2E-41 2.7E-46 352.0 25.9 215 2-233 12-239 (258)
120 PRK13633 cobalt transporter AT 100.0 1.1E-41 2.4E-46 356.6 25.8 220 2-234 4-231 (280)
121 PRK10584 putative ABC transpor 100.0 2.5E-41 5.4E-46 343.2 27.4 211 2-227 6-226 (228)
122 PRK09473 oppD oligopeptide tra 100.0 1.9E-41 4E-46 362.0 27.7 226 2-234 12-249 (330)
123 PRK10070 glycine betaine trans 100.0 1.4E-41 3.1E-46 369.7 27.0 220 2-233 4-251 (400)
124 PRK09984 phosphonate/organopho 100.0 1.4E-41 3E-46 352.4 25.5 219 2-232 4-238 (262)
125 PRK11308 dppF dipeptide transp 100.0 2.5E-41 5.3E-46 360.6 28.1 222 2-234 5-242 (327)
126 TIGR03740 galliderm_ABC gallid 100.0 2.1E-41 4.6E-46 342.6 26.3 208 3-232 1-209 (223)
127 TIGR02769 nickel_nikE nickel i 100.0 1.9E-41 4E-46 352.1 26.1 221 2-233 2-237 (265)
128 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.7E-41 3.7E-46 340.3 24.7 207 3-229 1-211 (211)
129 PRK14267 phosphate ABC transpo 100.0 2.1E-41 4.6E-46 349.1 26.0 218 2-233 4-234 (253)
130 PRK14247 phosphate ABC transpo 100.0 2.4E-41 5.3E-46 348.0 26.3 218 2-233 3-231 (250)
131 TIGR03415 ABC_choXWV_ATP choli 100.0 1.6E-41 3.6E-46 366.8 25.8 202 21-234 37-252 (382)
132 PRK13648 cbiO cobalt transport 100.0 4E-41 8.7E-46 350.3 27.8 216 2-234 7-229 (269)
133 PRK14273 phosphate ABC transpo 100.0 2.3E-41 5.1E-46 349.0 25.6 216 2-233 7-235 (254)
134 TIGR03410 urea_trans_UrtE urea 100.0 1.4E-41 2.9E-46 345.5 23.4 211 3-234 1-219 (230)
135 PRK13640 cbiO cobalt transport 100.0 4.2E-41 9E-46 352.5 27.4 219 2-234 5-230 (282)
136 TIGR00968 3a0106s01 sulfate AB 100.0 3.4E-41 7.3E-46 344.5 25.6 213 3-233 1-217 (237)
137 TIGR03873 F420-0_ABC_ATP propo 100.0 2.7E-41 5.7E-46 349.1 25.0 216 3-233 2-223 (256)
138 cd03300 ABC_PotA_N PotA is an 100.0 3.8E-41 8.3E-46 342.9 25.8 212 3-232 1-216 (232)
139 PRK10253 iron-enterobactin tra 100.0 2.8E-41 6.1E-46 350.7 25.2 218 2-234 7-231 (265)
140 PRK13632 cbiO cobalt transport 100.0 3E-41 6.6E-46 351.6 25.4 215 2-233 7-228 (271)
141 TIGR01184 ntrCD nitrate transp 100.0 2.4E-41 5.2E-46 344.1 24.1 199 24-232 1-200 (230)
142 PRK10575 iron-hydroxamate tran 100.0 2.5E-41 5.5E-46 351.0 24.6 217 2-233 11-234 (265)
143 TIGR01277 thiQ thiamine ABC tr 100.0 5.3E-41 1.1E-45 337.4 26.1 208 3-230 1-212 (213)
144 PRK14242 phosphate transporter 100.0 5.5E-41 1.2E-45 346.0 26.2 216 2-233 6-234 (253)
145 PRK13645 cbiO cobalt transport 100.0 4.6E-41 1E-45 353.4 26.0 219 2-234 6-238 (289)
146 PRK14250 phosphate ABC transpo 100.0 3.7E-41 8E-46 345.0 24.5 210 1-233 2-218 (241)
147 PRK10771 thiQ thiamine transpo 100.0 5.3E-41 1.1E-45 341.8 25.0 210 3-232 2-215 (232)
148 PRK15112 antimicrobial peptide 100.0 6.2E-41 1.4E-45 348.5 25.8 221 2-233 4-236 (267)
149 cd03299 ABC_ModC_like Archeal 100.0 8.1E-41 1.8E-45 341.2 26.0 212 3-233 1-216 (235)
150 PRK10744 pstB phosphate transp 100.0 7.1E-41 1.5E-45 346.7 25.9 216 2-233 13-241 (260)
151 cd03267 ABC_NatA_like Similar 100.0 6.1E-41 1.3E-45 342.4 25.0 197 21-229 34-236 (236)
152 PRK14256 phosphate ABC transpo 100.0 1.2E-40 2.5E-45 343.5 27.2 217 2-233 4-233 (252)
153 PRK14274 phosphate ABC transpo 100.0 8.7E-41 1.9E-45 345.8 26.2 216 2-233 12-240 (259)
154 PRK14241 phosphate transporter 100.0 8.3E-41 1.8E-45 345.8 26.0 217 2-233 4-239 (258)
155 PRK15093 antimicrobial peptide 100.0 1.2E-40 2.5E-45 356.3 27.9 224 2-233 3-245 (330)
156 PRK13549 xylose transporter AT 100.0 6.6E-41 1.4E-45 378.4 27.3 220 2-234 5-230 (506)
157 PRK14269 phosphate ABC transpo 100.0 9.6E-41 2.1E-45 342.9 26.0 218 1-233 1-227 (246)
158 PRK14235 phosphate transporter 100.0 1.1E-40 2.3E-45 346.7 26.5 217 2-233 19-248 (267)
159 COG4525 TauB ABC-type taurine 100.0 4.6E-41 1E-45 319.9 21.4 219 2-236 3-224 (259)
160 COG4559 ABC-type hemin transpo 100.0 2.9E-41 6.3E-46 325.5 20.2 216 3-236 2-230 (259)
161 cd03233 ABC_PDR_domain1 The pl 100.0 9.9E-41 2.2E-45 332.9 24.7 195 2-229 3-202 (202)
162 PRK13642 cbiO cobalt transport 100.0 1.7E-40 3.6E-45 347.1 27.5 217 2-234 4-227 (277)
163 PRK10762 D-ribose transporter 100.0 9.3E-41 2E-45 376.8 27.4 218 2-234 4-228 (501)
164 COG1123 ATPase components of v 100.0 6.7E-41 1.4E-45 367.6 24.9 227 2-236 5-244 (539)
165 TIGR02142 modC_ABC molybdenum 100.0 9.7E-41 2.1E-45 360.2 25.5 206 7-234 4-219 (354)
166 PRK13547 hmuV hemin importer A 100.0 8.2E-41 1.8E-45 348.2 23.8 220 3-234 2-242 (272)
167 PRK14239 phosphate transporter 100.0 1.8E-40 4E-45 341.8 26.2 216 2-233 5-233 (252)
168 PRK14245 phosphate ABC transpo 100.0 2.2E-40 4.7E-45 341.0 26.6 216 2-234 3-232 (250)
169 PRK14240 phosphate transporter 100.0 2.5E-40 5.4E-45 340.5 26.8 216 2-233 3-231 (250)
170 PRK11144 modC molybdate transp 100.0 1.1E-40 2.4E-45 359.3 25.3 205 3-234 2-216 (352)
171 PRK11701 phnK phosphonate C-P 100.0 2.1E-40 4.6E-45 342.7 26.3 215 2-233 6-238 (258)
172 PRK14270 phosphate ABC transpo 100.0 1.9E-40 4.1E-45 341.7 25.7 216 2-233 4-232 (251)
173 COG4175 ProV ABC-type proline/ 100.0 2.5E-41 5.3E-46 342.7 18.4 223 2-236 4-254 (386)
174 PRK14244 phosphate ABC transpo 100.0 2.3E-40 5E-45 341.1 25.9 215 4-233 7-234 (251)
175 cd03297 ABC_ModC_molybdenum_tr 100.0 2.4E-40 5.1E-45 332.9 25.1 200 7-229 5-214 (214)
176 PRK09700 D-allose transporter 100.0 1.4E-40 3E-45 376.3 26.2 218 2-234 5-232 (510)
177 PRK14272 phosphate ABC transpo 100.0 3E-40 6.6E-45 340.2 26.2 217 2-233 4-233 (252)
178 PRK14262 phosphate ABC transpo 100.0 2.9E-40 6.2E-45 340.1 25.9 216 2-233 3-231 (250)
179 TIGR03608 L_ocin_972_ABC putat 100.0 1.4E-40 3.1E-45 332.1 22.8 196 6-220 2-206 (206)
180 TIGR02982 heterocyst_DevA ABC 100.0 3.6E-40 7.8E-45 333.0 25.7 209 3-225 2-219 (220)
181 PRK14237 phosphate transporter 100.0 5E-40 1.1E-44 341.7 27.1 216 2-233 20-248 (267)
182 COG4181 Predicted ABC-type tra 100.0 5.4E-41 1.2E-45 313.3 17.5 210 3-227 7-226 (228)
183 TIGR02770 nickel_nikD nickel i 100.0 2.1E-40 4.6E-45 337.0 23.2 202 23-233 1-212 (230)
184 PRK14248 phosphate ABC transpo 100.0 4.3E-40 9.4E-45 342.3 25.9 216 2-233 21-249 (268)
185 PRK14259 phosphate ABC transpo 100.0 3E-40 6.4E-45 343.8 24.6 215 2-234 13-251 (269)
186 PRK15439 autoinducer 2 ABC tra 100.0 2.7E-40 5.9E-45 373.5 26.3 211 2-234 11-227 (510)
187 PRK14260 phosphate ABC transpo 100.0 5.6E-40 1.2E-44 339.8 25.7 217 2-234 7-241 (259)
188 PRK14253 phosphate ABC transpo 100.0 5.3E-40 1.1E-44 337.9 25.2 215 2-232 3-229 (249)
189 PRK14251 phosphate ABC transpo 100.0 7.2E-40 1.6E-44 337.3 26.1 216 2-233 4-232 (251)
190 PRK14249 phosphate ABC transpo 100.0 7.3E-40 1.6E-44 337.3 26.0 216 2-233 4-232 (251)
191 PRK14261 phosphate ABC transpo 100.0 8.2E-40 1.8E-44 337.4 26.3 216 2-233 6-234 (253)
192 PRK10418 nikD nickel transport 100.0 8E-40 1.7E-44 337.7 26.2 214 2-233 4-227 (254)
193 PRK10419 nikE nickel transport 100.0 1E-39 2.2E-44 339.5 26.5 222 2-234 3-239 (268)
194 CHL00131 ycf16 sulfate ABC tra 100.0 1.6E-39 3.4E-44 334.9 27.6 219 2-234 7-239 (252)
195 TIGR02633 xylG D-xylose ABC tr 100.0 7.8E-40 1.7E-44 369.3 27.6 218 3-233 2-227 (500)
196 PRK14258 phosphate ABC transpo 100.0 1.1E-39 2.3E-44 338.1 26.4 218 2-234 7-243 (261)
197 PRK14255 phosphate ABC transpo 100.0 1.3E-39 2.8E-44 335.7 26.6 216 2-233 5-233 (252)
198 PRK14236 phosphate transporter 100.0 1.1E-39 2.5E-44 339.9 26.5 216 2-233 25-253 (272)
199 cd03252 ABCC_Hemolysin The ABC 100.0 1.9E-40 4.2E-45 338.6 20.2 210 3-233 1-222 (237)
200 cd03213 ABCG_EPDR ABCG transpo 100.0 1.2E-39 2.7E-44 323.0 25.3 188 2-229 3-194 (194)
201 TIGR02323 CP_lyasePhnK phospho 100.0 1.2E-39 2.7E-44 336.0 25.7 215 2-233 3-235 (253)
202 PRK14275 phosphate ABC transpo 100.0 1.2E-39 2.5E-44 342.1 25.8 216 2-233 39-267 (286)
203 PRK15056 manganese/iron transp 100.0 1.1E-39 2.4E-44 340.1 25.2 217 2-233 6-227 (272)
204 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.3E-39 2.9E-44 329.9 25.0 191 20-229 34-224 (224)
205 PRK14271 phosphate ABC transpo 100.0 1.8E-39 3.9E-44 339.1 26.4 220 2-233 21-248 (276)
206 PRK10982 galactose/methyl gala 100.0 7.9E-40 1.7E-44 368.4 25.5 214 6-234 2-221 (491)
207 cd03232 ABC_PDR_domain2 The pl 100.0 1.4E-39 3E-44 322.1 24.1 188 2-229 3-192 (192)
208 PRK11288 araG L-arabinose tran 100.0 1.6E-39 3.4E-44 366.8 27.7 215 2-231 4-224 (501)
209 PRK14238 phosphate transporter 100.0 1.5E-39 3.2E-44 338.9 25.4 216 2-233 24-252 (271)
210 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.7E-40 8E-45 336.7 19.3 212 3-234 1-224 (238)
211 PRK14254 phosphate ABC transpo 100.0 2.5E-39 5.5E-44 339.4 25.9 214 2-233 39-266 (285)
212 PRK10261 glutathione transport 100.0 2.1E-39 4.6E-44 373.9 27.8 222 2-234 313-551 (623)
213 PRK14257 phosphate ABC transpo 100.0 3.1E-39 6.7E-44 344.6 26.8 222 2-234 80-311 (329)
214 cd03251 ABCC_MsbA MsbA is an e 100.0 5.2E-40 1.1E-44 334.7 19.8 210 3-233 1-222 (234)
215 PRK14246 phosphate ABC transpo 100.0 2.2E-39 4.7E-44 335.1 24.7 217 2-233 10-238 (257)
216 TIGR01257 rim_protein retinal- 100.0 1.2E-39 2.5E-44 403.8 26.7 222 2-239 1937-2162(2272)
217 KOG0058 Peptide exporter, ABC 100.0 3.6E-40 7.8E-45 366.6 19.9 216 2-233 465-688 (716)
218 PRK13538 cytochrome c biogenes 100.0 2.2E-39 4.8E-44 323.6 23.6 197 3-220 2-202 (204)
219 PRK10261 glutathione transport 100.0 1.5E-39 3.2E-44 375.3 25.6 220 2-234 12-256 (623)
220 PRK13546 teichoic acids export 100.0 6.9E-39 1.5E-43 332.2 28.1 214 1-234 3-230 (264)
221 cd03245 ABCC_bacteriocin_expor 100.0 1.3E-39 2.9E-44 328.6 22.0 208 2-229 2-220 (220)
222 PRK14266 phosphate ABC transpo 100.0 3.9E-39 8.4E-44 331.7 25.7 217 1-233 2-231 (250)
223 COG1123 ATPase components of v 100.0 1.4E-39 3E-44 357.2 23.7 221 3-234 281-517 (539)
224 PRK09580 sufC cysteine desulfu 100.0 5.8E-39 1.3E-43 329.8 26.6 218 3-234 2-233 (248)
225 PRK14263 phosphate ABC transpo 100.0 5.2E-39 1.1E-43 333.0 26.1 217 3-233 9-242 (261)
226 PRK13543 cytochrome c biogenes 100.0 3.7E-39 8E-44 324.4 24.2 200 2-222 11-212 (214)
227 cd03254 ABCC_Glucan_exporter_l 100.0 8.5E-40 1.8E-44 332.0 19.7 210 2-232 2-222 (229)
228 PRK03695 vitamin B12-transport 100.0 2.4E-39 5.1E-44 333.1 23.1 197 23-233 11-219 (248)
229 TIGR03269 met_CoM_red_A2 methy 100.0 2.7E-39 5.9E-44 366.5 25.7 216 3-236 1-258 (520)
230 COG2274 SunT ABC-type bacterio 100.0 1E-39 2.2E-44 375.3 22.1 218 2-236 471-696 (709)
231 TIGR02324 CP_lyasePhnL phospho 100.0 6E-39 1.3E-43 324.8 25.1 207 3-221 2-223 (224)
232 PRK11174 cysteine/glutathione 100.0 2E-39 4.4E-44 372.9 24.5 210 2-234 349-570 (588)
233 PRK14265 phosphate ABC transpo 100.0 5.2E-39 1.1E-43 335.3 25.3 215 2-234 20-256 (274)
234 COG4988 CydD ABC-type transpor 100.0 2.2E-39 4.7E-44 354.3 23.3 210 3-234 321-541 (559)
235 cd03231 ABC_CcmA_heme_exporter 100.0 3.6E-39 7.9E-44 321.3 22.9 194 3-220 1-198 (201)
236 PRK10247 putative ABC transpor 100.0 3.6E-39 7.8E-44 326.9 23.0 207 2-230 7-221 (225)
237 PRK14243 phosphate transporter 100.0 4.5E-39 9.8E-44 334.0 24.1 215 2-234 10-246 (264)
238 PRK15134 microcin C ABC transp 100.0 5.2E-39 1.1E-43 364.9 26.8 223 2-234 5-244 (529)
239 cd03230 ABC_DR_subfamily_A Thi 100.0 4.3E-39 9.2E-44 313.3 22.3 169 3-225 1-173 (173)
240 TIGR03269 met_CoM_red_A2 methy 100.0 3.8E-39 8.2E-44 365.3 25.3 219 2-234 279-515 (520)
241 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.7E-39 5.8E-44 378.0 24.3 209 2-234 451-671 (686)
242 KOG0055 Multidrug/pheromone ex 100.0 1.3E-37 2.8E-42 363.5 37.9 219 2-236 350-576 (1228)
243 PRK15134 microcin C ABC transp 100.0 3.9E-39 8.4E-44 365.9 24.6 220 3-233 276-512 (529)
244 PRK13549 xylose transporter AT 100.0 4.9E-39 1.1E-43 363.2 25.1 221 3-234 260-492 (506)
245 PRK13539 cytochrome c biogenes 100.0 6.8E-39 1.5E-43 320.8 23.3 198 1-222 1-200 (207)
246 PRK11176 lipid transporter ATP 100.0 2.2E-39 4.7E-44 372.2 22.3 213 2-234 341-565 (582)
247 PRK14252 phosphate ABC transpo 100.0 1.2E-38 2.5E-43 331.1 25.3 215 2-233 16-246 (265)
248 TIGR01257 rim_protein retinal- 100.0 8.3E-39 1.8E-43 396.2 28.0 220 2-238 928-1151(2272)
249 PRK09544 znuC high-affinity zi 100.0 7.8E-39 1.7E-43 329.7 23.2 200 2-233 4-206 (251)
250 cd03253 ABCC_ATM1_transporter 100.0 2.9E-39 6.3E-44 329.6 19.6 204 3-232 1-220 (236)
251 cd03244 ABCC_MRP_domain2 Domai 100.0 8.7E-39 1.9E-43 322.9 22.1 208 2-230 2-220 (221)
252 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.4E-38 3E-43 317.0 22.8 187 3-239 1-196 (200)
253 COG4604 CeuD ABC-type enteroch 100.0 4E-40 8.7E-45 314.1 11.1 216 3-236 2-225 (252)
254 TIGR01189 ccmA heme ABC export 100.0 1.4E-38 2.9E-43 316.4 22.5 193 3-219 1-197 (198)
255 PRK10790 putative multidrug tr 100.0 1E-38 2.2E-43 367.4 24.8 210 2-234 340-561 (592)
256 TIGR01166 cbiO cobalt transpor 100.0 1.1E-38 2.3E-43 315.0 21.5 176 21-207 5-188 (190)
257 PRK09700 D-allose transporter 100.0 1.1E-38 2.4E-43 360.8 24.5 212 3-231 266-493 (510)
258 COG1129 MglA ABC-type sugar tr 100.0 1.8E-38 3.8E-43 346.4 25.2 215 2-231 8-229 (500)
259 cd03229 ABC_Class3 This class 100.0 1.4E-38 3.1E-43 311.0 21.7 170 3-224 1-178 (178)
260 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-38 2.3E-43 332.3 22.1 212 2-235 2-224 (275)
261 PRK13545 tagH teichoic acids e 100.0 3.5E-38 7.5E-43 347.5 27.2 196 21-236 37-232 (549)
262 KOG0057 Mitochondrial Fe/S clu 100.0 5.8E-39 1.3E-43 345.9 20.3 216 2-236 351-574 (591)
263 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.8E-39 1.3E-43 376.7 21.6 211 2-235 477-699 (710)
264 PRK14264 phosphate ABC transpo 100.0 3.7E-38 8.1E-43 333.7 25.6 222 2-233 45-286 (305)
265 COG1132 MdlB ABC-type multidru 100.0 1E-38 2.2E-43 365.5 22.8 217 2-236 328-552 (567)
266 TIGR03771 anch_rpt_ABC anchore 100.0 1.4E-38 3.1E-43 322.2 21.3 196 29-234 1-199 (223)
267 cd03215 ABC_Carb_Monos_II This 100.0 2.5E-38 5.5E-43 310.4 22.1 170 2-225 4-182 (182)
268 COG4598 HisP ABC-type histidin 100.0 1.6E-39 3.5E-44 305.4 12.9 215 3-234 7-239 (256)
269 PRK11160 cysteine/glutathione 100.0 1.2E-38 2.5E-43 365.2 22.7 212 2-234 338-560 (574)
270 cd03248 ABCC_TAP TAP, the Tran 100.0 7.9E-39 1.7E-43 324.4 18.9 204 2-225 11-226 (226)
271 TIGR02633 xylG D-xylose ABC tr 100.0 2.2E-38 4.7E-43 357.5 24.5 220 2-232 257-488 (500)
272 COG0396 sufC Cysteine desulfur 100.0 5.9E-38 1.3E-42 307.0 23.8 232 1-245 2-242 (251)
273 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-38 2.4E-43 373.5 21.6 212 2-235 478-701 (711)
274 PRK11288 araG L-arabinose tran 100.0 2.8E-38 6.2E-43 356.6 24.0 204 22-234 267-483 (501)
275 PRK10762 D-ribose transporter 100.0 5.2E-38 1.1E-42 354.4 26.0 204 22-234 266-482 (501)
276 PRK10938 putative molybdenum t 100.0 1.8E-38 4E-43 357.3 21.9 206 2-233 3-221 (490)
277 PRK13540 cytochrome c biogenes 100.0 5.4E-38 1.2E-42 312.6 22.4 192 3-218 2-197 (200)
278 cd03246 ABCC_Protease_Secretio 100.0 4.9E-38 1.1E-42 305.9 21.3 168 3-225 1-173 (173)
279 cd03247 ABCC_cytochrome_bd The 100.0 4.3E-38 9.3E-43 307.6 21.0 174 3-229 1-178 (178)
280 TIGR01193 bacteriocin_ABC ABC- 100.0 2.1E-38 4.6E-43 371.7 22.4 212 2-235 473-696 (708)
281 TIGR03375 type_I_sec_LssB type 100.0 4.1E-38 9E-43 368.5 24.5 213 2-235 463-687 (694)
282 COG4987 CydC ABC-type transpor 100.0 9E-39 2E-43 344.3 16.6 214 2-236 336-561 (573)
283 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.4E-37 3.1E-42 311.1 23.7 197 2-231 6-207 (207)
284 COG4148 ModC ABC-type molybdat 100.0 6.6E-39 1.4E-43 320.1 13.8 192 26-235 16-217 (352)
285 cd03288 ABCC_SUR2 The SUR doma 100.0 8E-38 1.7E-42 323.4 22.2 210 2-233 19-240 (257)
286 PRK13657 cyclic beta-1,2-gluca 100.0 6.2E-38 1.3E-42 360.5 23.3 210 2-233 334-555 (588)
287 TIGR01842 type_I_sec_PrtD type 100.0 5.2E-38 1.1E-42 357.9 22.1 215 2-234 316-540 (544)
288 TIGR02203 MsbA_lipidA lipid A 100.0 5.5E-38 1.2E-42 359.8 22.0 213 2-234 330-554 (571)
289 cd03250 ABCC_MRP_domain1 Domai 100.0 1.4E-37 3E-42 310.5 21.5 196 3-224 1-204 (204)
290 PRK15439 autoinducer 2 ABC tra 100.0 1.3E-37 2.9E-42 351.7 24.0 202 23-233 278-489 (510)
291 COG3845 ABC-type uncharacteriz 100.0 2.5E-37 5.4E-42 331.0 23.7 214 2-230 4-223 (501)
292 COG4161 ArtP ABC-type arginine 100.0 8.7E-38 1.9E-42 289.0 17.4 215 1-232 1-226 (242)
293 cd03214 ABC_Iron-Siderophores_ 100.0 9.2E-38 2E-42 305.9 18.7 174 4-229 1-180 (180)
294 TIGR01187 potA spermidine/putr 100.0 1.9E-37 4E-42 331.0 21.9 184 39-234 1-188 (325)
295 TIGR01846 type_I_sec_HlyB type 100.0 1.2E-37 2.7E-42 364.4 21.8 212 2-234 455-678 (694)
296 TIGR02204 MsbA_rel ABC transpo 100.0 1.6E-37 3.5E-42 356.3 21.8 212 2-233 337-560 (576)
297 PRK10789 putative multidrug tr 100.0 2.1E-37 4.6E-42 354.6 21.8 212 2-234 313-536 (569)
298 cd03290 ABCC_SUR1_N The SUR do 100.0 6.5E-37 1.4E-41 308.8 22.7 199 4-224 2-218 (218)
299 TIGR01192 chvA glucan exporter 100.0 5.1E-37 1.1E-41 352.2 24.6 211 2-234 334-556 (585)
300 PRK10535 macrolide transporter 100.0 1.9E-36 4.1E-41 350.7 29.2 219 2-235 4-231 (648)
301 cd03216 ABC_Carb_Monos_I This 100.0 1.5E-36 3.2E-41 292.8 22.0 156 3-227 1-162 (163)
302 cd03228 ABCC_MRP_Like The MRP 100.0 7.2E-37 1.6E-41 297.1 19.9 166 3-224 1-171 (171)
303 cd03223 ABCD_peroxisomal_ALDP 100.0 1.3E-36 2.8E-41 294.0 21.3 163 3-223 1-163 (166)
304 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.6E-36 3.5E-41 311.4 23.2 182 21-225 7-194 (246)
305 PRK13541 cytochrome c biogenes 100.0 1.6E-36 3.4E-41 300.9 22.0 190 3-217 2-192 (195)
306 PTZ00265 multidrug resistance 100.0 4.9E-37 1.1E-41 379.9 22.2 217 2-234 1165-1450(1466)
307 COG4172 ABC-type uncharacteriz 100.0 1.8E-36 4E-41 315.2 22.4 222 2-234 276-514 (534)
308 PRK15177 Vi polysaccharide exp 100.0 1E-36 2.2E-41 306.5 19.8 195 22-240 1-196 (213)
309 COG4619 ABC-type uncharacteriz 100.0 5.3E-38 1.2E-42 292.4 9.6 191 20-225 15-212 (223)
310 PRK15064 ABC transporter ATP-b 100.0 2.2E-36 4.8E-41 343.5 24.6 207 3-233 2-239 (530)
311 PRK10982 galactose/methyl gala 100.0 2E-36 4.4E-41 340.7 23.1 213 3-232 251-476 (491)
312 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.9E-36 1.1E-40 313.4 24.1 199 2-234 39-245 (282)
313 COG1119 ModF ABC-type molybden 100.0 6.6E-37 1.4E-41 303.0 16.4 213 3-230 32-256 (257)
314 KOG0055 Multidrug/pheromone ex 100.0 1.1E-36 2.4E-41 355.7 20.3 218 2-235 987-1212(1228)
315 PRK11819 putative ABC transpor 100.0 3.6E-36 7.7E-41 343.3 24.1 208 2-233 6-247 (556)
316 TIGR02868 CydC thiol reductant 100.0 1.1E-36 2.4E-41 346.0 19.3 185 2-206 334-529 (529)
317 PRK10938 putative molybdenum t 100.0 3.4E-36 7.3E-41 338.9 22.4 214 2-230 260-486 (490)
318 COG4618 ArpD ABC-type protease 100.0 3.1E-36 6.7E-41 322.0 20.0 220 2-239 334-563 (580)
319 PRK15064 ABC transporter ATP-b 100.0 5.1E-36 1.1E-40 340.5 22.8 199 2-232 319-521 (530)
320 TIGR02857 CydD thiol reductant 100.0 3.2E-36 6.9E-41 342.2 20.9 198 2-220 320-529 (529)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.2E-36 1.3E-40 341.2 23.1 208 2-233 4-245 (552)
322 COG4674 Uncharacterized ABC-ty 100.0 1.7E-36 3.8E-41 288.8 15.3 217 2-234 5-233 (249)
323 PRK10522 multidrug transporter 100.0 1E-35 2.2E-40 339.3 24.5 203 2-228 322-530 (547)
324 COG4172 ABC-type uncharacteriz 100.0 1.1E-35 2.4E-40 309.4 21.0 226 2-234 6-245 (534)
325 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.3E-35 2.9E-40 338.7 23.8 208 2-228 337-551 (555)
326 PLN03232 ABC transporter C fam 100.0 6E-36 1.3E-40 373.0 22.5 212 2-235 1234-1457(1495)
327 PLN03130 ABC transporter C fam 100.0 9.9E-36 2.2E-40 371.5 23.6 212 2-235 1237-1460(1622)
328 PRK13409 putative ATPase RIL; 100.0 4.2E-35 9E-40 334.7 24.5 199 2-233 340-539 (590)
329 PTZ00243 ABC transporter; Prov 100.0 2.3E-35 5.1E-40 367.6 23.7 212 2-235 1308-1532(1560)
330 PRK11819 putative ABC transpor 100.0 4.9E-35 1.1E-39 334.0 24.1 200 2-230 324-527 (556)
331 TIGR00957 MRP_assoc_pro multi 100.0 3.1E-35 6.8E-40 367.0 23.2 212 2-235 1284-1507(1522)
332 COG4608 AppF ABC-type oligopep 100.0 5.1E-35 1.1E-39 295.4 20.4 189 2-234 4-197 (268)
333 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.6E-35 1.7E-39 332.2 24.1 200 2-230 322-525 (552)
334 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.3E-35 9.3E-40 302.3 19.3 189 21-229 14-220 (255)
335 COG4586 ABC-type uncharacteriz 100.0 1.4E-35 3.1E-40 295.8 14.6 205 22-238 38-248 (325)
336 PTZ00265 multidrug resistance 100.0 5.2E-35 1.1E-39 361.9 23.0 213 2-224 382-656 (1466)
337 KOG0056 Heavy metal exporter H 100.0 1.1E-35 2.3E-40 314.2 13.6 214 2-233 537-758 (790)
338 TIGR01271 CFTR_protein cystic 100.0 1.2E-34 2.6E-39 360.8 24.2 211 2-235 1217-1439(1490)
339 COG1134 TagH ABC-type polysacc 100.0 3.5E-34 7.6E-39 284.1 22.1 221 2-241 3-241 (249)
340 cd03238 ABC_UvrA The excision 100.0 2.3E-34 5.1E-39 280.1 19.9 160 19-227 6-168 (176)
341 PRK10636 putative ABC transpor 100.0 2.2E-34 4.8E-39 332.7 23.0 199 2-233 312-514 (638)
342 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.7E-34 1E-38 269.7 19.8 144 3-224 1-144 (144)
343 COG1101 PhnK ABC-type uncharac 100.0 2.5E-34 5.3E-39 278.2 17.0 218 3-230 2-232 (263)
344 PRK11147 ABC transporter ATPas 100.0 8.1E-34 1.8E-38 328.5 24.1 198 2-228 319-519 (635)
345 KOG0059 Lipid exporter ABCA1 a 100.0 1.6E-34 3.4E-39 343.9 18.6 221 3-240 565-791 (885)
346 cd03222 ABC_RNaseL_inhibitor T 100.0 8.7E-34 1.9E-38 276.3 20.1 156 6-235 4-162 (177)
347 COG4136 ABC-type uncharacteriz 100.0 2.8E-34 6.2E-39 262.9 15.0 191 1-206 1-195 (213)
348 TIGR00954 3a01203 Peroxysomal 100.0 6.9E-34 1.5E-38 329.7 21.9 197 3-221 452-652 (659)
349 PLN03073 ABC transporter F fam 100.0 2.2E-33 4.8E-38 326.1 24.6 201 2-232 508-710 (718)
350 PRK10636 putative ABC transpor 100.0 2E-33 4.3E-38 324.9 23.5 203 3-230 2-230 (638)
351 PLN03232 ABC transporter C fam 100.0 2E-33 4.2E-38 350.5 22.4 206 2-235 614-827 (1495)
352 PLN03130 ABC transporter C fam 100.0 2.6E-33 5.7E-38 349.8 22.4 205 2-235 614-827 (1622)
353 COG4167 SapF ABC-type antimicr 100.0 3.9E-33 8.5E-38 263.0 16.9 221 3-234 5-237 (267)
354 PRK11147 ABC transporter ATPas 100.0 8.5E-33 1.8E-37 320.0 23.4 203 2-231 3-238 (635)
355 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.3E-32 7.2E-37 260.5 20.3 151 5-224 2-157 (157)
356 PRK13409 putative ATPase RIL; 100.0 8.1E-33 1.8E-37 315.9 18.6 180 21-223 87-287 (590)
357 TIGR00957 MRP_assoc_pro multi 100.0 2.7E-32 5.9E-37 340.7 23.1 209 2-235 636-849 (1522)
358 COG5265 ATM1 ABC-type transpor 100.0 7.8E-33 1.7E-37 290.1 14.3 215 3-235 263-485 (497)
359 COG4133 CcmA ABC-type transpor 100.0 2.1E-32 4.5E-37 260.4 15.3 188 1-208 1-192 (209)
360 COG4107 PhnK ABC-type phosphon 100.0 3.5E-32 7.6E-37 254.7 14.0 213 3-235 7-240 (258)
361 COG0488 Uup ATPase components 100.0 1.5E-31 3.3E-36 298.9 20.0 204 2-230 3-234 (530)
362 TIGR01271 CFTR_protein cystic 100.0 1.3E-31 2.8E-36 333.9 21.4 193 21-235 439-635 (1490)
363 cd03270 ABC_UvrA_I The excisio 100.0 1.2E-30 2.7E-35 264.7 21.2 196 20-229 7-226 (226)
364 PTZ00243 ABC transporter; Prov 100.0 9.6E-31 2.1E-35 326.4 20.5 189 21-234 673-868 (1560)
365 PLN03073 ABC transporter F fam 100.0 5.4E-31 1.2E-35 306.2 16.8 210 2-231 177-426 (718)
366 PF00005 ABC_tran: ABC transpo 100.0 4.6E-30 9.9E-35 239.4 13.3 132 24-175 1-137 (137)
367 cd03271 ABC_UvrA_II The excisi 100.0 3.4E-29 7.4E-34 258.0 20.7 195 21-231 8-261 (261)
368 COG4778 PhnL ABC-type phosphon 100.0 1.3E-29 2.7E-34 236.9 12.7 210 2-222 4-227 (235)
369 KOG0054 Multidrug resistance-a 100.0 5.5E-29 1.2E-33 297.7 20.8 206 2-235 518-730 (1381)
370 KOG0054 Multidrug resistance-a 100.0 7.7E-29 1.7E-33 296.5 19.5 213 2-236 1138-1362(1381)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 1.2E-28 2.6E-33 244.8 13.7 164 25-221 14-189 (197)
372 COG0488 Uup ATPase components 100.0 5.3E-28 1.2E-32 270.4 19.4 196 2-230 321-519 (530)
373 COG4138 BtuD ABC-type cobalami 100.0 1.7E-29 3.6E-34 237.0 5.7 194 24-235 15-220 (248)
374 COG1129 MglA ABC-type sugar tr 100.0 5E-27 1.1E-31 256.8 21.9 201 23-232 274-486 (500)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.7E-27 8E-32 241.5 15.0 186 20-221 14-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 7E-28 1.5E-32 242.0 4.0 177 20-222 16-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1E-26 2.2E-31 239.7 12.1 177 34-221 25-242 (251)
378 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.7E-26 5.9E-31 230.8 12.1 178 25-224 18-210 (213)
379 COG4178 ABC-type uncharacteriz 99.9 1.7E-25 3.6E-30 249.3 17.6 195 2-221 392-587 (604)
380 PRK00635 excinuclease ABC subu 99.9 5.8E-25 1.3E-29 269.6 21.7 137 91-235 759-905 (1809)
381 COG3845 ABC-type uncharacteriz 99.9 1.3E-24 2.9E-29 233.4 21.0 219 2-234 257-490 (501)
382 cd03240 ABC_Rad50 The catalyti 99.9 2.6E-25 5.6E-30 222.2 13.3 165 26-223 15-199 (204)
383 COG4170 SapD ABC-type antimicr 99.9 5.3E-25 1.1E-29 212.1 11.0 229 3-236 4-248 (330)
384 PRK00349 uvrA excinuclease ABC 99.9 4.5E-24 9.7E-29 252.3 20.9 124 95-234 792-925 (943)
385 COG4615 PvdE ABC-type sideroph 99.9 1.5E-24 3.2E-29 225.8 9.5 203 2-229 322-530 (546)
386 TIGR00630 uvra excinuclease AB 99.9 3.4E-23 7.4E-28 244.5 21.5 124 94-233 789-922 (924)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.1E-23 4.5E-28 207.5 13.9 168 24-224 12-192 (198)
388 KOG0927 Predicted transporter 99.9 2.1E-23 4.5E-28 225.1 13.0 209 3-231 76-304 (614)
389 COG1245 Predicted ATPase, RNas 99.9 9.6E-23 2.1E-27 215.8 16.5 173 24-221 357-530 (591)
390 KOG0927 Predicted transporter 99.9 4.1E-23 8.9E-28 222.9 10.2 197 3-230 390-590 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 5.2E-23 1.1E-27 211.7 9.2 181 32-224 21-236 (247)
392 KOG0060 Long-chain acyl-CoA tr 99.9 1.2E-21 2.7E-26 212.8 17.3 203 2-222 433-641 (659)
393 KOG0062 ATPase component of AB 99.8 1.2E-21 2.6E-26 210.5 9.2 191 3-225 81-273 (582)
394 PF01061 ABC2_membrane: ABC-2 99.8 7.2E-23 1.6E-27 202.7 -0.6 208 338-550 1-210 (210)
395 KOG2355 Predicted ABC-type tra 99.8 3.6E-20 7.7E-25 178.5 15.6 209 2-236 13-237 (291)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.3E-20 2.8E-25 189.5 13.1 169 24-224 14-211 (213)
397 cd03280 ABC_MutS2 MutS2 homolo 99.8 4.3E-21 9.4E-26 191.2 9.3 153 23-229 16-172 (200)
398 KOG0066 eIF2-interacting prote 99.8 3E-20 6.5E-25 195.1 13.3 187 3-221 587-775 (807)
399 COG1245 Predicted ATPase, RNas 99.8 2.3E-20 5E-25 197.8 10.2 173 31-222 97-288 (591)
400 cd03239 ABC_SMC_head The struc 99.8 3.7E-19 8E-24 174.0 15.9 74 147-222 95-172 (178)
401 KOG0062 ATPase component of AB 99.8 1.7E-19 3.7E-24 194.0 14.4 195 3-227 363-559 (582)
402 KOG0064 Peroxisomal long-chain 99.8 8.9E-20 1.9E-24 195.9 11.6 192 2-218 481-679 (728)
403 cd03283 ABC_MutS-like MutS-lik 99.8 2.2E-19 4.7E-24 178.8 10.3 147 21-220 14-163 (199)
404 COG2401 ABC-type ATPase fused 99.8 8.6E-19 1.9E-23 183.9 13.1 186 20-226 395-588 (593)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.1E-19 4.6E-24 181.8 7.6 153 20-230 16-175 (222)
406 cd03241 ABC_RecN RecN ATPase i 99.8 3.6E-18 7.8E-23 178.6 15.5 76 146-224 170-249 (276)
407 COG0178 UvrA Excinuclease ATPa 99.8 5.5E-18 1.2E-22 190.6 17.0 128 94-236 783-919 (935)
408 PRK00635 excinuclease ABC subu 99.8 9.1E-18 2E-22 206.9 19.9 127 94-236 1660-1796(1809)
409 cd03227 ABC_Class2 ABC-type Cl 99.8 3.4E-18 7.4E-23 164.7 12.2 74 147-222 78-155 (162)
410 PRK00349 uvrA excinuclease ABC 99.7 1.1E-17 2.3E-22 198.4 13.5 135 92-234 434-583 (943)
411 TIGR00630 uvra excinuclease AB 99.7 1.8E-17 3.9E-22 196.2 14.2 134 93-234 433-581 (924)
412 cd03243 ABC_MutS_homologs The 99.7 4.8E-18 1E-22 169.5 7.3 154 26-233 21-176 (202)
413 KOG0066 eIF2-interacting prote 99.7 1.6E-18 3.5E-23 182.2 2.7 209 2-227 264-489 (807)
414 cd03242 ABC_RecF RecF is a rec 99.7 4.4E-16 9.6E-21 162.4 16.8 76 145-225 182-269 (270)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.7 2.1E-16 4.6E-21 157.8 9.8 142 20-214 15-157 (204)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.1E-15 2.4E-20 154.1 11.5 158 20-235 17-180 (216)
417 KOG0063 RNAse L inhibitor, ABC 99.6 1.6E-14 3.4E-19 152.6 13.2 178 20-221 348-531 (592)
418 TIGR02858 spore_III_AA stage I 99.5 4.5E-14 9.7E-19 146.5 11.7 137 35-233 112-266 (270)
419 smart00534 MUTSac ATPase domai 99.5 7.1E-15 1.5E-19 144.8 5.1 79 146-227 61-141 (185)
420 PF02463 SMC_N: RecF/RecN/SMC 99.5 4E-14 8.6E-19 142.9 6.4 88 120-221 121-212 (220)
421 PRK00064 recF recombination pr 99.4 4.2E-12 9.2E-17 137.8 19.8 77 145-225 272-359 (361)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.4 8.1E-13 1.7E-17 133.0 12.3 129 22-206 17-154 (213)
423 TIGR01069 mutS2 MutS2 family p 99.4 6.8E-13 1.5E-17 155.9 10.0 128 27-206 314-445 (771)
424 cd00820 PEPCK_HprK Phosphoenol 99.3 1.5E-12 3.3E-17 115.8 6.8 72 21-104 2-78 (107)
425 TIGR01247 drrB daunorubicin re 99.3 1.8E-10 4E-15 117.4 23.1 225 346-602 1-233 (236)
426 KOG0063 RNAse L inhibitor, ABC 99.3 1.5E-12 3.1E-17 137.9 7.7 172 32-222 98-288 (592)
427 cd03287 ABC_MSH3_euk MutS3 hom 99.3 1.2E-11 2.7E-16 125.0 13.7 138 21-214 18-160 (222)
428 TIGR00634 recN DNA repair prot 99.3 8.4E-12 1.8E-16 143.1 9.8 77 145-224 439-519 (563)
429 PRK00409 recombination and DNA 99.3 5.9E-12 1.3E-16 148.4 8.6 81 145-228 389-470 (782)
430 TIGR03062 pip_yhgE_Cterm YhgE/ 99.3 1.3E-10 2.7E-15 116.3 16.4 150 428-609 58-207 (208)
431 PTZ00132 GTP-binding nuclear p 99.3 9.5E-12 2.1E-16 125.1 8.0 45 150-194 156-205 (215)
432 PRK08533 flagellar accessory p 99.3 5.9E-11 1.3E-15 121.0 13.5 152 28-221 18-184 (230)
433 PRK10869 recombination and rep 99.2 2.1E-11 4.5E-16 139.0 10.5 77 145-224 429-509 (553)
434 TIGR00618 sbcc exonuclease Sbc 99.2 3E-11 6.5E-16 148.0 11.4 79 144-223 948-1036(1042)
435 PRK07721 fliI flagellum-specif 99.2 2.5E-10 5.4E-15 126.1 17.3 171 21-232 146-339 (438)
436 PF13304 AAA_21: AAA domain; P 99.2 3.6E-11 7.7E-16 121.0 9.5 63 145-207 235-300 (303)
437 cd03286 ABC_MSH6_euk MutS6 hom 99.2 4.3E-11 9.3E-16 120.7 9.7 133 21-206 17-153 (218)
438 PHA02562 46 endonuclease subun 99.2 2.5E-11 5.5E-16 139.4 9.0 78 144-225 466-555 (562)
439 TIGR01291 nodJ ABC-2 type tran 99.2 3.4E-09 7.4E-14 109.6 23.6 232 340-606 7-248 (253)
440 cd01128 rho_factor Transcripti 99.2 5.2E-11 1.1E-15 122.4 9.6 75 145-225 128-211 (249)
441 cd01124 KaiC KaiC is a circadi 99.2 2.3E-10 5E-15 112.0 13.2 145 37-221 2-163 (187)
442 COG0178 UvrA Excinuclease ATPa 99.2 1.7E-10 3.7E-15 131.0 13.6 137 92-236 426-577 (935)
443 TIGR00025 Mtu_efflux ABC trans 99.2 5.1E-09 1.1E-13 106.7 23.5 219 352-603 2-226 (232)
444 PRK13695 putative NTPase; Prov 99.2 2.4E-11 5.2E-16 118.3 4.8 77 146-228 78-156 (174)
445 COG3910 Predicted ATPase [Gene 99.1 1.6E-09 3.4E-14 104.1 13.0 67 139-206 122-188 (233)
446 TIGR03861 phenyl_ABC_PedC alco 99.1 1.8E-08 3.9E-13 104.0 21.3 202 338-546 2-218 (253)
447 PRK10246 exonuclease subunit S 99.0 1.6E-10 3.5E-15 141.1 6.5 78 144-222 947-1032(1047)
448 PRK03918 chromosome segregatio 99.0 5.9E-10 1.3E-14 134.8 9.9 76 144-221 786-867 (880)
449 TIGR02788 VirB11 P-type DNA tr 99.0 7.8E-10 1.7E-14 117.6 9.6 141 27-235 137-280 (308)
450 PRK13830 conjugal transfer pro 99.0 7.1E-09 1.5E-13 123.7 18.1 78 161-243 649-736 (818)
451 cd01120 RecA-like_NTPases RecA 99.0 3.8E-09 8.3E-14 99.9 11.5 63 147-209 68-140 (165)
452 cd01125 repA Hexameric Replica 99.0 3.9E-09 8.5E-14 108.1 11.7 136 34-207 1-160 (239)
453 PRK15066 inner membrane transp 98.9 5.6E-07 1.2E-11 93.2 26.9 240 337-610 7-254 (257)
454 PRK01156 chromosome segregatio 98.9 5.2E-09 1.1E-13 126.8 13.6 76 144-221 799-883 (895)
455 PRK06793 fliI flagellum-specif 98.9 4.1E-09 8.8E-14 115.7 10.9 155 21-230 144-305 (432)
456 PRK06067 flagellar accessory p 98.9 1.3E-08 2.9E-13 103.8 14.1 162 23-222 13-187 (234)
457 TIGR00606 rad50 rad50. This fa 98.9 2.8E-09 6.1E-14 133.4 9.8 69 145-214 1198-1277(1311)
458 cd01131 PilT Pilus retraction 98.8 2.1E-08 4.5E-13 99.9 10.6 57 156-221 66-122 (198)
459 TIGR02168 SMC_prok_B chromosom 98.8 6.3E-09 1.4E-13 129.1 8.0 76 143-221 1086-1165(1179)
460 PRK06995 flhF flagellar biosyn 98.8 1.9E-08 4.1E-13 112.0 10.4 151 22-204 244-400 (484)
461 PRK02224 chromosome segregatio 98.7 2.9E-08 6.4E-13 120.1 9.4 77 144-222 779-868 (880)
462 TIGR02169 SMC_prok_A chromosom 98.7 2.2E-08 4.7E-13 124.5 8.5 75 144-221 1072-1150(1164)
463 TIGR03238 dnd_assoc_3 dnd syst 98.7 1.2E-08 2.7E-13 111.9 4.8 50 21-75 19-69 (504)
464 PRK07196 fliI flagellum-specif 98.6 3.9E-08 8.4E-13 108.2 6.4 174 21-229 143-334 (434)
465 smart00382 AAA ATPases associa 98.6 1.1E-06 2.4E-11 79.8 14.5 118 33-204 1-124 (148)
466 TIGR02655 circ_KaiC circadian 98.6 2.3E-08 5.1E-13 112.8 3.8 165 23-221 9-190 (484)
467 TIGR01026 fliI_yscN ATPase Fli 98.5 8.8E-07 1.9E-11 98.2 14.2 173 21-233 151-345 (440)
468 PRK13891 conjugal transfer pro 98.5 1.2E-06 2.6E-11 105.3 15.7 69 157-226 680-751 (852)
469 TIGR03881 KaiC_arch_4 KaiC dom 98.5 4.5E-08 9.7E-13 99.4 3.0 33 23-55 8-41 (229)
470 TIGR00611 recf recF protein. A 98.5 2E-07 4.3E-12 101.5 7.2 59 146-207 275-342 (365)
471 cd02023 UMPK Uridine monophosp 98.5 1.5E-07 3.3E-12 93.4 5.3 112 36-179 1-113 (198)
472 TIGR01420 pilT_fam pilus retra 98.5 9.4E-07 2E-11 95.5 11.6 56 156-220 187-242 (343)
473 COG0842 ABC-type multidrug tra 98.5 1.8E-05 3.8E-10 81.6 20.7 165 417-610 119-284 (286)
474 PRK14079 recF recombination pr 98.5 3.5E-07 7.7E-12 99.0 8.2 73 146-226 263-344 (349)
475 COG0419 SbcC ATPase involved i 98.5 4.6E-07 1E-11 109.9 10.0 87 134-222 801-897 (908)
476 PRK05399 DNA mismatch repair p 98.4 6.1E-07 1.3E-11 107.5 9.6 136 22-216 596-738 (854)
477 cd01130 VirB11-like_ATPase Typ 98.4 6.5E-07 1.4E-11 88.2 8.1 82 23-107 14-99 (186)
478 PRK06002 fliI flagellum-specif 98.3 2.1E-06 4.4E-11 94.8 8.3 170 21-229 153-344 (450)
479 PRK13898 type IV secretion sys 98.3 2.9E-05 6.2E-10 93.2 18.8 48 160-207 638-686 (800)
480 cd01122 GP4d_helicase GP4d_hel 98.2 2.7E-05 5.8E-10 81.1 15.6 155 21-205 17-190 (271)
481 PLN03210 Resistant to P. syrin 98.2 3.7E-06 8.1E-11 104.6 9.9 163 26-243 199-365 (1153)
482 TIGR01248 drrC daunorubicin re 98.2 1.8E-05 3.9E-10 75.5 11.8 129 413-546 16-146 (152)
483 TIGR02680 conserved hypothetic 98.2 2.9E-06 6.4E-11 106.3 7.5 59 144-205 1245-1315(1353)
484 PRK09825 idnK D-gluconate kina 98.1 1.3E-06 2.9E-11 85.3 3.4 64 33-103 2-69 (176)
485 TIGR03518 ABC_perm_GldF glidin 98.1 0.00057 1.2E-08 70.3 22.5 185 341-541 2-206 (240)
486 PF13555 AAA_29: P-loop contai 98.1 3E-06 6.4E-11 67.9 4.3 37 24-60 12-49 (62)
487 PF13558 SbcCD_C: Putative exo 98.0 1.3E-05 2.7E-10 69.6 6.6 47 145-191 31-90 (90)
488 cd00009 AAA The AAA+ (ATPases 98.0 4E-05 8.7E-10 70.2 10.4 55 152-207 72-131 (151)
489 PRK13873 conjugal transfer ATP 98.0 0.0001 2.2E-09 88.6 16.5 47 161-207 632-679 (811)
490 cd01876 YihA_EngB The YihA (En 98.0 1.3E-05 2.7E-10 75.7 6.7 44 145-192 121-169 (170)
491 PRK00454 engB GTP-binding prot 98.0 0.0001 2.3E-09 72.3 13.4 66 121-195 126-195 (196)
492 PRK08149 ATP synthase SpaL; Va 98.0 1.2E-05 2.5E-10 88.6 6.6 177 21-230 139-330 (428)
493 TIGR02903 spore_lon_C ATP-depe 98.0 2.2E-05 4.9E-10 91.1 9.2 111 33-191 174-291 (615)
494 PRK14088 dnaA chromosomal repl 97.9 0.00019 4.1E-09 80.3 16.2 103 163-268 193-304 (440)
495 TIGR00152 dephospho-CoA kinase 97.9 9.9E-06 2.1E-10 79.9 5.1 73 149-223 60-133 (188)
496 PRK13764 ATPase; Provisional 97.9 7.1E-05 1.5E-09 85.8 12.4 63 161-231 321-400 (602)
497 PF00488 MutS_V: MutS domain V 97.9 5.9E-05 1.3E-09 77.2 10.6 63 151-215 109-173 (235)
498 TIGR00416 sms DNA repair prote 97.9 2.4E-05 5.2E-10 87.5 8.2 62 163-224 169-247 (454)
499 TIGR02524 dot_icm_DotB Dot/Icm 97.9 2E-05 4.3E-10 85.6 6.9 75 32-106 132-210 (358)
500 PRK06315 type III secretion sy 97.9 2.8E-05 6E-10 86.1 8.1 108 21-132 152-277 (442)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-112 Score=970.51 Aligned_cols=578 Identities=40% Similarity=0.673 Sum_probs=510.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--ccc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDY 79 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~ 79 (661)
.++|+|++++.+.+.. ..+++|+|||++++|||++|||||||||||||||+|+|+..++...+|+|++||++.. ..+
T Consensus 25 ~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred eeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 5789999999876332 4688999999999999999999999999999999999999876678999999997643 346
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.+|||+|||.++|+|||+|++.|+|++|+|.+.++++++++|+++++++||++|+|+++|+...||+||||||||+||.
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~ 183 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIAL 183 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHH
Confidence 78999999999999999999999999999999889999999999999999999999999999988999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHH
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFA 239 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~ 239 (661)
+|++||+||||||||||||+.++.++++.|+++|++|+|||+|+|||+++++++||++++|++|+++|+|+++++.+||+
T Consensus 184 Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~ 263 (613)
T KOG0061|consen 184 ELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFS 263 (613)
T ss_pred HHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCchhHHHHhhccC--chhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHHHh-h
Q 045930 240 EAGFPCPTRRNPSDHFLRCINSD--FDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRI-Q 316 (661)
Q Consensus 240 ~~g~~~~~~~npad~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~-~ 316 (661)
+.|++||++.||+||++++++.+ .+...+.. ......+.++..+...+..... .
T Consensus 264 ~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 320 (613)
T KOG0061|consen 264 SLGFPCPELENPADFLLDLLSVDSGTRELEEAV-----------------------RIAKLINKFSQTDNLKKTLEALEK 320 (613)
T ss_pred hCCCCCCCcCChHHHHHHHHccCCCchhHHhHH-----------------------HHHHHhhhccccchhhhhHHHHhh
Confidence 99999999999999999999854 22111110 0111222222111111100000 0
Q ss_pred hcccccccccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 045930 317 GISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFI 396 (661)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~~~~~f~ 396 (661)
........ +....++||.|++.|++|.+++++|||.+++.|+++.+++|+++|++||+++++..++++|.++++|+
T Consensus 321 ~~~~~~~~----~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~ 396 (613)
T KOG0061|consen 321 SLSTSKKV----EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFI 396 (613)
T ss_pred hccccccc----ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH
Confidence 01100000 11116899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHH
Q 045930 397 SGFMTFMSIG-GFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDL 475 (661)
Q Consensus 397 ~~~~~~~s~~-~~~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l 475 (661)
..++.|.++. +++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|++++..+|++|++++
T Consensus 397 ~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~ 476 (613)
T KOG0061|consen 397 LSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLII 476 (613)
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 9999888775 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCcc
Q 045930 476 TSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEF 555 (661)
Q Consensus 476 ~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~ 555 (661)
++..++++++++++++++||..+|.++++++++.|++|+|||++.++||++ |+| ++|+||++|+|||++.|||.+...
T Consensus 477 ~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~-~~w-~~~~S~~ry~~e~l~~n~~~~~~~ 554 (613)
T KOG0061|consen 477 LLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKY-FRW-ISYLSYFRYAFEALLINQFSGGSS 554 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHH-HHH-HHHHhHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999985 788 999999999999999999997344
Q ss_pred ccCCC--CCCCcCHHHHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045930 556 DAIDR--DGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFREKA 611 (661)
Q Consensus 556 ~~~~~--~~~~~~G~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 611 (661)
.|... ..+..+|++++++ .+++. .+.|.|+.+++++.++||+++|++|+++.+.
T Consensus 555 ~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~ 610 (613)
T KOG0061|consen 555 RCFLSGNLCCESTGEDVLKQ-LGFED-SSFWLDLLVLLAFIVFFRVLGYLALRFRVKR 610 (613)
T ss_pred ccccCcCCcccccHHHHHHh-cCCcc-cccchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44332 4577899999997 57764 3599999999999999999999999998764
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.2e-105 Score=923.00 Aligned_cols=565 Identities=32% Similarity=0.526 Sum_probs=502.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cccCeEEEEecCCCCCCCCCH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lTV 97 (661)
++.+|+|+|++++|||++||+|||||||||||++|+|+.+++...+|+|.+||.+.. ..++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999998765446899999999753 235679999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc-ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH-WRGISGGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~-~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
+|||.|++.++.|...++++++++++++++.+||.+++|+.+|+.. .++|||||||||+||+||+.+|++++|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999888777788888899999999999999999999753 689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHHhcCCCCCCCCCchhHHH
Q 045930 177 LDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFL 256 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~~~~~npad~~~ 256 (661)
||+.++..+++.|++++++|+|||+++|||+++++++||++++|++|+++|.|+++++.+||+++|++||++.||+||++
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 276 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999999889999999999988899999999999999999999999999999999999999999999999
Q ss_pred HhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHHHhhhccccc-----ccccccCCC
Q 045930 257 RCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRIQGISSIE-----GLEFKRKNG 331 (661)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 331 (661)
++++.+.+.. ..+.+..+++.+.|++++.+++..+.+......+ .........
T Consensus 277 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (617)
T TIGR00955 277 QVLAVIPGSE----------------------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG 334 (617)
T ss_pred HHhhcCcccc----------------------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccc
Confidence 9886542210 0012334567788888777665554433211110 001111234
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH-hHHHH
Q 045930 332 SQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSI-GGFPS 410 (661)
Q Consensus 332 ~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~s~-~~~~~ 410 (661)
+..+|++|+.+|++|++++.+|||.++++|+++++++|+++|++||+++++++++++|.|++||+..++.|.++ ..++.
T Consensus 335 ~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~ 414 (617)
T TIGR00955 335 YNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINV 414 (617)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999888888764 66889
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 411 FIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIA 490 (661)
Q Consensus 411 ~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~ 490 (661)
|++||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..+++++++++++
T Consensus 415 f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~ 494 (617)
T TIGR00955 415 FTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLIS 494 (617)
T ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCcc-ccCC---CCCCCcC
Q 045930 491 SMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEF-DAID---RDGPKLK 566 (661)
Q Consensus 491 ~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~-~~~~---~~~~~~~ 566 (661)
+++||..+|..+++++++++++|+||+++.++||+| |+| ++|+||++||+|+++.|||.|..+ +|.. .+.|..+
T Consensus 495 ~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~-~~W-~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~ 572 (617)
T TIGR00955 495 CAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVY-FKW-LSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSS 572 (617)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHH-HHH-HHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcC
Confidence 999999999999999999999999999999999985 999 999999999999999999999876 4532 1225578
Q ss_pred HHHHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045930 567 GDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFREK 610 (661)
Q Consensus 567 G~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 610 (661)
|+++|+. +|++.++ .|.|+++|+++.++|++++|++|+++.+
T Consensus 573 g~~~l~~-~g~~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~ 614 (617)
T TIGR00955 573 GEVILET-LSFRNAD-LYLDLIGLVILIFFFRLLAYFALRIRIR 614 (617)
T ss_pred hHHHHHh-cCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999986 7887544 7999999999999999999999998755
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6.7e-105 Score=917.79 Aligned_cols=573 Identities=31% Similarity=0.494 Sum_probs=481.5
Q ss_pred eEEEEEEEEEeecCC-----------------------cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 2 YLVWEEVTVVVPNFG-----------------------SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~-----------------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|.|++|+++..+ .-.++.+|+|||+++++||++||+||||||||||||+|+|+.
T Consensus 39 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~ 118 (659)
T PLN03211 39 TLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI 118 (659)
T ss_pred EEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 688999999886321 002467999999999999999999999999999999999998
Q ss_pred CCCCceeeEEEECCeecc-cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 045930 59 SGNVVMTGNVLLNGKKRR-LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137 (661)
Q Consensus 59 ~~~~~~~G~i~~~g~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~ 137 (661)
+++ ..+|+|.+||++.. ..++.+|||+|++.+++.+||+||+.+++.++++...++++++++++++++.+||++++|+
T Consensus 119 ~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t 197 (659)
T PLN03211 119 QGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENT 197 (659)
T ss_pred CCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCc
Confidence 763 25899999998753 2345699999999999999999999999888766556667777889999999999999999
Q ss_pred cccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 138 ~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
++|+...++||||||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++
T Consensus 198 ~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~i 277 (659)
T PLN03211 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSV 277 (659)
T ss_pred eeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceE
Confidence 99988889999999999999999999999999999999999999999999999999889999999999977799999999
Q ss_pred EEEeCCeEEEecCCCChhHHHHhcCCCCCCCCCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHH
Q 045930 218 FLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGI 297 (661)
Q Consensus 218 ~lL~~G~~v~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (661)
++|++|+++|.|+++++.+||+++|++||.+.|||||++++++.+.+.- . . . + . ...+..+.
T Consensus 278 ilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~------~-----~-~--~--~--~~~~~~~~ 339 (659)
T PLN03211 278 LVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD------G-----V-S--E--R--EKPNVKQS 339 (659)
T ss_pred EEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC------C-----c-c--c--c--ccchHHHH
Confidence 9999999999999999999999999999999999999999987643210 0 0 0 0 0 00112234
Q ss_pred HHHHhhcCHHHHHHHHHhhh--ccc-cc-------ccccc-cCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHH
Q 045930 298 LIKKYRCSEYATRARSRIQG--ISS-IE-------GLEFK-RKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYI 366 (661)
Q Consensus 298 l~~~~~~s~~~~~~~~~~~~--~~~-~~-------~~~~~-~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~ 366 (661)
+.+.|++... ++..+.++. ... .. ..... ......++||+|+.+|++|++++ +||+.+.++|+++++
T Consensus 340 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i 417 (659)
T PLN03211 340 LVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVI 417 (659)
T ss_pred HHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHH
Confidence 5556643211 111111110 000 00 00000 11124478999999999999998 899999999999999
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q 045930 367 ILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFM-SIGGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLT 445 (661)
Q Consensus 367 ~~~l~~G~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~-s~~~~~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~ 445 (661)
++|+++|++||+++ ..++++|.|++||++.++.+. ++..++.|++||+||+||+.+|+|++++|++|++++|+|+.+
T Consensus 418 ~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~ 495 (659)
T PLN03211 418 AAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMEL 495 (659)
T ss_pred HHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999985 678999999999998886654 457899999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcc
Q 045930 446 AMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPK 525 (661)
Q Consensus 446 ~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~ 525 (661)
+.+++|++|+|||+||++++++|++|++++++..++++++|+++++++||+.+|+.+++++++++++|+||+++ +||+
T Consensus 496 ~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~ 573 (659)
T PLN03211 496 ILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS 573 (659)
T ss_pred HHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 7998
Q ss_pred cccccccccccHHHHHHHHHHHhhhCCCc-----cccCCCC-----CCCcCHHHHHHhhhCCCCCchhHHHHHHHHHHHH
Q 045930 526 VFWRYPIAYINYGAWALQGAYKNDLIGLE-----FDAIDRD-----GPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILI 595 (661)
Q Consensus 526 ~~w~w~i~yis~~~ya~e~l~~nef~g~~-----~~~~~~~-----~~~~~G~~~L~~~~~~~~~~~~w~~~~il~~~~~ 595 (661)
| |+| ++|+||++||||+++.|||.+.. ++|..+. .|...++.++. +.+.|.|+++|+++++
T Consensus 574 ~-~~W-~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~-------~~~~~~~~~~l~~~~~ 644 (659)
T PLN03211 574 C-MAW-IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG-------QISPATSVSVLIFMFV 644 (659)
T ss_pred H-HHH-HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-------ccchHHHHHHHHHHHH
Confidence 5 999 99999999999999999997643 3453321 13334443332 2358999999999999
Q ss_pred HHHHHHHHHHHHH
Q 045930 596 SYRVIFFAILKFR 608 (661)
Q Consensus 596 ~~~~l~~~~L~~~ 608 (661)
+||+++|++|++.
T Consensus 645 ~~~~l~~~~L~~~ 657 (659)
T PLN03211 645 GYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999754
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-103 Score=969.25 Aligned_cols=571 Identities=24% Similarity=0.366 Sum_probs=501.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeeEEEECCeecc----cccCeEEEEecCCCCCCC
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-VVMTGNVLLNGKKRR----LDYGGVAYVTQENIMLGT 94 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~i~~~g~~~~----~~~~~i~yv~Q~~~l~~~ 94 (661)
+++||+|||+.++|||+++|+||||||||||||+|+|+.++. ...+|+|.+||++.. ..++.++||+|+|.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 357999999999999999999999999999999999997432 125899999998753 124569999999999999
Q ss_pred CCHHHHHHHHHhcCCCC----CCCHHHHHHH-HHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEE
Q 045930 95 LTVRETIAYSAHLRLPS----NMNNEEITDV-IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLF 169 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lll 169 (661)
+||+||+.|+++++.|. +.++++..++ ++++++.+||++++|+++|+..+++|||||||||+||++|+.+|++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999999887653 2345554444 577899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHHhcCCCCCCC
Q 045930 170 LDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTR 248 (661)
Q Consensus 170 LDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~~~~ 248 (661)
|||||+|||+.++.++++.|++++++ |+|||+++|||+++++++||++++|++|+++|+|+++++.+||+++|++||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999975 99999999999889999999999999999999999999999999999999999
Q ss_pred CCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHHHhhhccccc------
Q 045930 249 RNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRIQGISSIE------ 322 (661)
Q Consensus 249 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~------ 322 (661)
.||+||++++++.+.+..... .+. ......+++.+.|++|+.+++..++++......
T Consensus 313 ~n~aDfl~~~~~~~~~~~~~~-------~e~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 375 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIKPG-------YEK----------KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTK 375 (1394)
T ss_pred CChHHHHHhccChhhhhcccc-------ccc----------cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhH
Confidence 999999999876542211000 000 001223568999999988777666554321110
Q ss_pred -------c----cccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 045930 323 -------G----LEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGS 391 (661)
Q Consensus 323 -------~----~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~~ 391 (661)
. ........+..++|+|+++|++|++++++|||.++++|+++++++|+++|++||+++++++++++|.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g 455 (1394)
T TIGR00956 376 EAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGG 455 (1394)
T ss_pred HHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Confidence 0 00011223568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHH
Q 045930 392 CAAFISGFMTFMSIGGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYA 471 (661)
Q Consensus 392 ~~~f~~~~~~~~s~~~~~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f 471 (661)
++||++.++.|+++..++.+++||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|
T Consensus 456 ~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f 535 (1394)
T TIGR00956 456 ALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFY 535 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHH
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhC
Q 045930 472 GLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLI 551 (661)
Q Consensus 472 ~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~ 551 (661)
+++++++.++++++++++++++||+.+|+.+++++++++++|+||+++.++||+| |+| ++|+||++|||||++.|||+
T Consensus 536 ~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~-~~W-~~yisp~~yafeal~~nef~ 613 (1394)
T TIGR00956 536 LLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGW-SKW-IYYVNPLAYAFESLMVNEFH 613 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHH-HHH-HHHcCHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999985 999 99999999999999999999
Q ss_pred CCccccCC--C----------------------CCCCcCHHHHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 552 GLEFDAID--R----------------------DGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKF 607 (661)
Q Consensus 552 g~~~~~~~--~----------------------~~~~~~G~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 607 (661)
|.+++|.. | |.+.++|+++|+..++++.++ .|+|++||++++++|++++++++.+
T Consensus 614 ~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~ 692 (1394)
T TIGR00956 614 GRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEF 692 (1394)
T ss_pred CCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988741 1 113468999999767887654 9999999999999999999999988
Q ss_pred Hhh
Q 045930 608 REK 610 (661)
Q Consensus 608 ~~~ 610 (661)
...
T Consensus 693 ~~~ 695 (1394)
T TIGR00956 693 NKG 695 (1394)
T ss_pred ccc
Confidence 763
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.1e-102 Score=957.72 Aligned_cols=578 Identities=27% Similarity=0.412 Sum_probs=508.8
Q ss_pred eEEEEEEEEEeecCCc-------ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee
Q 045930 2 YLVWEEVTVVVPNFGS-------GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~-------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~ 74 (661)
.++|+||+|.++.... ...+++|+|||++++|||++|||||||||||||||+|+|+.+++ ..+|+|.+||.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECCcc
Confidence 6899999999864321 12357999999999999999999999999999999999997643 358999999987
Q ss_pred ccc--ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 75 RRL--DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 75 ~~~--~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
... .++.+|||+|+|.+++.+||+|||.|++.+++|...+++++.++++++++.+||.+++|+.+|++.+++||||||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 532 245699999999999999999999999988877666677777889999999999999999999877789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-CeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG-GETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~-G~~v~~G~~ 231 (661)
|||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++ |+++|+|++
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 9999999999999999999999999999999999999999999999999999998778999999999995 899999996
Q ss_pred ----CChhHHHHhc-CCC-CCCCCCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcC
Q 045930 232 ----KSAPTFFAEA-GFP-CPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCS 305 (661)
Q Consensus 232 ----~~~~~~f~~~-g~~-~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s 305 (661)
+++.+||+++ |++ ||+..|||||++++++.+.+. ....++.+.|++|
T Consensus 1106 ~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------------------------~~~~d~~~~~~~s 1158 (1470)
T PLN03140 1106 GRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------------------------KLGIDFAEHYKSS 1158 (1470)
T ss_pred ccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------------------------cccchHHHHHhcc
Confidence 5789999997 664 999999999999987542110 0113578999999
Q ss_pred HHHHHHHHHhhhccccccc--ccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCh
Q 045930 306 EYATRARSRIQGISSIEGL--EFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNY 383 (661)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~ 383 (661)
+.+++..+.+++....... .......+.++|++|+++|++|+++++||||.++++|+++++++|+++|++||+++++.
T Consensus 1159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~ 1238 (1470)
T PLN03140 1159 SLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKR 1238 (1470)
T ss_pred HHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 8887776655443321111 11112346789999999999999999999999999999999999999999999999875
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 045930 384 ---TAIYARGSCAAFISGFMTFMSI-GGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMV 459 (661)
Q Consensus 384 ---~~i~~r~~~~~f~~~~~~~~s~-~~~~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~ 459 (661)
.++++|.|++|+.+.++.+..+ ..+|.|..||+||+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+
T Consensus 1239 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~ 1318 (1470)
T PLN03140 1239 SNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMV 1318 (1470)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677889999988888777554 567999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHH
Q 045930 460 KFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGA 539 (661)
Q Consensus 460 gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ 539 (661)
||+++++.||+|+++++++.++++++|+++++++||..+|.++++++++++++|+||+++.++||+| |+| ++|+||++
T Consensus 1319 Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~-~~W-~~~isp~~ 1396 (1470)
T PLN03140 1319 AFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKW-WVW-YYWICPVA 1396 (1470)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchH-HHH-HHHcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 999 99999999
Q ss_pred HHHHHHHHhhhCCCccccCCCCC-CCcCHHHHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045930 540 WALQGAYKNDLIGLEFDAIDRDG-PKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFREK 610 (661)
Q Consensus 540 ya~e~l~~nef~g~~~~~~~~~~-~~~~G~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 610 (661)
|+++|++.|||.|.+++|.+++. +..++++++..+||++.++ .|++++++++++++|++++++++|+.+.
T Consensus 1397 y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1397 WTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDF-MGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCccc-ccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999887766653 2357889988889998664 8999999999999999999999987654
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.9e-101 Score=944.24 Aligned_cols=572 Identities=23% Similarity=0.367 Sum_probs=493.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc--ccCeEEEEecCCCCCCCCCH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--DYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--~~~~i~yv~Q~~~l~~~lTV 97 (661)
.+.||+|||+.++|||+++|+||||||||||||+|+|++++....+|+|.+||++... .++.++||+|+|.+++++||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4679999999999999999999999999999999999998765579999999987532 25679999999999999999
Q ss_pred HHHHHHHHhcCCCC-------CCCHHHH------------------------HHHHHHHHHHcCCCccccccccCccccc
Q 045930 98 RETIAYSAHLRLPS-------NMNNEEI------------------------TDVIEEAITEMGLEDCADRLIGNWHWRG 146 (661)
Q Consensus 98 ~E~l~~~~~l~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 146 (661)
+||+.|+++++.+. ..+++++ +..++++++.+||++++||.+|+..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999998876321 1112221 1236789999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .|+|||+++|||+++++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 999999999999999999999999999999999999999999999987 4899999999998899999999999999999
Q ss_pred EEecCCCChhHHHHhcCCCCCCCCCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcC
Q 045930 226 VYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCS 305 (661)
Q Consensus 226 v~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s 305 (661)
+|+|+++++.+||+++||+||++.|||||++++++.+.+.. .. . ....|... ...++++++|++|
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~-~~-----~-----~~~~p~~~----~~~~~~~~~~~~s 481 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ-YW-----A-----DRNKPYRY----ISVSEFAERFKSF 481 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh-hh-----h-----ccCCcccc----CCHHHHHHHHHhc
Confidence 99999999999999999999999999999999887532110 00 0 00011000 1235689999999
Q ss_pred HHHHHHHHHhhhccccc--ccccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCh
Q 045930 306 EYATRARSRIQGISSIE--GLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNY 383 (661)
Q Consensus 306 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~ 383 (661)
+.+++..++++...... .......+.+..+++.|++.|++|++++++||+.+++.|+++.+++|+++|++||+++.++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~ 561 (1470)
T PLN03140 482 HVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561 (1470)
T ss_pred HHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 88777666554321111 0000112346688999999999999999999999999999999999999999999997543
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Q 045930 384 ---TAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVK 460 (661)
Q Consensus 384 ---~~i~~r~~~~~f~~~~~~~~s~~~~~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~g 460 (661)
.+.+.+.|++||.+.+++|.+++.++.+++||+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+|
T Consensus 562 ~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~G 641 (1470)
T PLN03140 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIG 641 (1470)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Confidence 34566778888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHH
Q 045930 461 FRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAW 540 (661)
Q Consensus 461 l~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~y 540 (661)
|++++++||+|+++++++.++++++++++++++||+.+|+.+++++++++++|+||+++.++||+| |+| ++|+||++|
T Consensus 642 l~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w-~~W-~~yisp~~Y 719 (1470)
T PLN03140 642 FAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNW-WEW-AYWVSPLSY 719 (1470)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchH-HHH-HHHhCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999985 999 999999999
Q ss_pred HHHHHHHhhhCCCccccC-CCCCCCcCHHHHHHhhhCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045930 541 ALQGAYKNDLIGLEFDAI-DRDGPKLKGDVILKTMLGMNLDR-SKWWDLAVVVAILISYRVIFFAILKFRE 609 (661)
Q Consensus 541 a~e~l~~nef~g~~~~~~-~~~~~~~~G~~~L~~~~~~~~~~-~~w~~~~il~~~~~~~~~l~~~~L~~~~ 609 (661)
||||++.|||.+..+.+. ..+.+...|+++|+. +|+..++ ..|+|+++|++++++|+++++++|++..
T Consensus 720 a~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~-~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 720 GFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHhccCccccCcccCCCCcccHHHHHHh-cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998776432 123356799999975 7886543 4799999999999999999999999876
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8.3e-100 Score=935.36 Aligned_cols=574 Identities=24% Similarity=0.416 Sum_probs=499.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-cccC
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-LDYG 80 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~~~~ 80 (661)
.++|+||++.++. ++.++.+|+|||++++|||++||+||||||||||||+|+|+.+++...+|+|.+||++.. ..++
T Consensus 759 ~l~~~nl~~~~~~--~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 759 IFHWRNLTYEVKI--KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred eEEEEeeEEEecC--CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 3789999999853 223467999999999999999999999999999999999998754345799999999863 2356
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH
Q 045930 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 81 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
.+|||+|+|.+++.+||+||+.|++.++.|...++++++++++++++.+||++++|+.+|+.. .+|||||||||+||+|
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHH
Confidence 799999999999999999999999998877666777778899999999999999999998543 3899999999999999
Q ss_pred HhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC-eEEEecCC----CCh
Q 045930 161 ILTRPQ-LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG-ETVYFGEA----KSA 234 (661)
Q Consensus 161 L~~~P~-lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G-~~v~~G~~----~~~ 234 (661)
|+.+|+ +|||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999999889999999999987788999999999987 99999997 567
Q ss_pred hHHHHhcCC-CCCCCCCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHH
Q 045930 235 PTFFAEAGF-PCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARS 313 (661)
Q Consensus 235 ~~~f~~~g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~ 313 (661)
.+||++.|+ +||++.|||||++++++.+.+. +..+++.+.|+.|+..++..+
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~---------------------------~~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA---------------------------HANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc---------------------------chhccHHHHHhcCHHHHHHHH
Confidence 899999996 9999999999999988653211 001347788888887766655
Q ss_pred Hhhhccccc----cc-ccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 045930 314 RIQGISSIE----GL-EFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYA 388 (661)
Q Consensus 314 ~~~~~~~~~----~~-~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~ 388 (661)
+++...... .. .......+.++|++|+++|++|+++++||||.++++|+++++++|+++|++||++++++.++++
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~ 1128 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQN 1128 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 543322110 00 0111234678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHH
Q 045930 389 RGSCAAFISGFMTFMSIGGFPSFIEEMRVF-SRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISH 467 (661)
Q Consensus 389 r~~~~~f~~~~~~~~s~~~~~~~~~er~vf-~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~ 467 (661)
|.+++|+++.+..+.....+|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++..
T Consensus 1129 ~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~ 1208 (1394)
T TIGR00956 1129 QMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASK 1208 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccc
Confidence 999999888877776667789999999886 9999999999999999999999999999999999999999999988766
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHH
Q 045930 468 -------FIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAW 540 (661)
Q Consensus 468 -------f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~y 540 (661)
|++|++++++..++++++|+++++++||..+|..+++++++++++|+||+++.++||.+ |+| ++|+||++|
T Consensus 1209 ~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~-~~w-~~~~sp~~y 1286 (1394)
T TIGR00956 1209 TGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGF-WIF-MYRCSPFTY 1286 (1394)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHH-HhH-HHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 999 999999999
Q ss_pred HHHHHHHhhhCCCccccCCC-------------------------------C----C---CCcCHHHHHHhhhCCCCCch
Q 045930 541 ALQGAYKNDLIGLEFDAIDR-------------------------------D----G---PKLKGDVILKTMLGMNLDRS 582 (661)
Q Consensus 541 a~e~l~~nef~g~~~~~~~~-------------------------------~----~---~~~~G~~~L~~~~~~~~~~~ 582 (661)
+++|++.|||.|.+++|... + + +..+|+++|+. ++++.+ +
T Consensus 1287 ~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~-~ 1364 (1394)
T TIGR00956 1287 LVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYS-G 1364 (1394)
T ss_pred HHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCccc-c
Confidence 99999999999988766321 0 1 13589999997 577654 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045930 583 KWWDLAVVVAILISYRVIFFAILKFREK 610 (661)
Q Consensus 583 ~w~~~~il~~~~~~~~~l~~~~L~~~~~ 610 (661)
.|+|+++++++++++ ++++++|+++.|
T Consensus 1365 ~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1365 RWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred cccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 899999999999988 778887877644
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.4e-99 Score=873.35 Aligned_cols=576 Identities=29% Similarity=0.451 Sum_probs=506.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-c-ccC
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-L-DYG 80 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~-~~~ 80 (661)
..|+|+.++++. ++.++++|+|||+.++||.++||||+||||||||||+||||...+ .++|+|++||.+.. . .+|
T Consensus 788 ~~w~dl~~~~~~--qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R 864 (1391)
T KOG0065|consen 788 FYWVDLPYEMPI--QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFAR 864 (1391)
T ss_pred EEEEeCCccccc--cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhcc
Confidence 468888888875 346789999999999999999999999999999999999998654 47999999999865 2 367
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH
Q 045930 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 81 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
.+|||.|+|.|.+.+||||.|.|+|.+|+|...+.+++.+.|+++++.++|++++|..||.++ +|||.+||||++||.|
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVE 943 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999988 9999999999999999
Q ss_pred HhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEecCCCC----h
Q 045930 161 ILTRP-QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS-GGETVYFGEAKS----A 234 (661)
Q Consensus 161 L~~~P-~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~-~G~~v~~G~~~~----~ 234 (661)
|+.+| .||||||||||||+.+|..|++.+|++++.|+||+||+|||+.++++.||++++|+ +|++||+|+..+ +
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999997 789999999865 4
Q ss_pred hHHHHhcC-CCCCCCCCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHH
Q 045930 235 PTFFAEAG-FPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARS 313 (661)
Q Consensus 235 ~~~f~~~g-~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~ 313 (661)
++||++.| .+||+..|||||+++++....+. +...++.+.|++|+.++++.+
T Consensus 1024 i~YFes~~~~~~~~~~NPA~~mLevi~~~~~~---------------------------~~~~D~a~~w~~S~e~k~~~e 1076 (1391)
T KOG0065|consen 1024 IEYFESIGGVKCISDENPAEWMLEVIGAGAEA---------------------------SLSVDFAEIWKNSEEYKRNKE 1076 (1391)
T ss_pred HHHHHhcCCccCCCCCChHHHHHhhccccccc---------------------------ccCccHHHHHhccHHHHHHHH
Confidence 56999985 99999999999999998653211 112368999999999999998
Q ss_pred Hhhhccccc---ccccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 045930 314 RIQGISSIE---GLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARG 390 (661)
Q Consensus 314 ~~~~~~~~~---~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~ 390 (661)
.+++..... ....+..+++.+|+|.|++.+++|++..+||+|.|+++|++..++.||++|+.||++|.+..+++|..
T Consensus 1077 ~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m 1156 (1391)
T KOG0065|consen 1077 LVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAM 1156 (1391)
T ss_pred HHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHH
Confidence 887765432 12222345577999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHH
Q 045930 391 SCAAFISGFMTFMSIGGFP-SFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFI 469 (661)
Q Consensus 391 ~~~~f~~~~~~~~s~~~~~-~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~ 469 (661)
+.+|..+.+..-...+..| .+..||.+++||+.+|+|+..+|++|.+++|+|+.++++++|.+|+|+|+|+..++.+|+
T Consensus 1157 ~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~ 1236 (1391)
T KOG0065|consen 1157 GAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFF 1236 (1391)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHH
Confidence 9888776665544444444 455689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhh
Q 045930 470 YAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKND 549 (661)
Q Consensus 470 ~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~ne 549 (661)
+|++..+++.+..+++|+++.+++||.++|.++.+.+..++.+|+||+++++.||+| |+| ++|+||+.|.+++++.-+
T Consensus 1237 ~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~f-W~w-my~lsP~ty~l~gli~~~ 1314 (1391)
T KOG0065|consen 1237 WFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKF-WIW-MYYLSPVTYTLEGLISSQ 1314 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccce-eee-eeecCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999985 999 999999999999999999
Q ss_pred hCCCccccCCCCC------CCcCHHHHHHhhhC----CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 045930 550 LIGLEFDAIDRDG------PKLKGDVILKTMLG----MNLDRSKWWDLAVVVAILISYRVIFFAILKFREKAS 612 (661)
Q Consensus 550 f~g~~~~~~~~~~------~~~~G~~~L~~~~~----~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 612 (661)
+++.+-.|...+. +-.+-.++++.++| +..+.. -....+.+++.+++.+++....|+.++.+
T Consensus 1315 ~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~-a~~~c~~c~y~v~~~~l~~f~~~y~~~wr 1386 (1391)
T KOG0065|consen 1315 LGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPL-ATTACVYCAYTVADAFLAAFNIKYLNFWR 1386 (1391)
T ss_pred hCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCc-ceeEEEEeeeehHHHHHHHHHHHHHHHHH
Confidence 9998887754432 12344566777777 543321 22334566678888988888888887643
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-94 Score=834.63 Aligned_cols=573 Identities=27% Similarity=0.440 Sum_probs=506.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc--ccCeEEEEecCCCCCCCCCHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--DYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
..+|+|+|+.++|||++.++||+||||||||++|+|.++......|+|.+||.+.+. .++.++|+.|+|.|+|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 479999999999999999999999999999999999987766668899999987643 257899999999999999999
Q ss_pred HHHHHHHhcCCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 045930 99 ETIAYSAHLRLPSN----MNNEEITD-VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173 (661)
Q Consensus 99 E~l~~~~~l~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP 173 (661)
|+|.|+++++.|.. .++.++.+ ..|.+++.+||++|+||+||+..+||+||||||||+||.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999998732 33444332 67899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHHhcCCCCCCCCCch
Q 045930 174 TSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPS 252 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~~~~~npa 252 (661)
|+|||+.++.++++.||++++. +.|+++++|||+++++++||+|++|++|++||+||.+++++||+++||.||++.++|
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 9999999999999999999985 899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHHHhhhcccccccc--cccCC
Q 045930 253 DHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRIQGISSIEGLE--FKRKN 330 (661)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~ 330 (661)
||+.++++. .+..+... ....+... -...++.+.|.+++.+++...+++....+.... ....+
T Consensus 368 DfLt~vts~-k~~~~~~~----------~~~~~~~~----~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~ 432 (1391)
T KOG0065|consen 368 DFLTEVTSK-KDQEQYWN----------KRSKPYPY----TSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSS 432 (1391)
T ss_pred HHHHHhhcC-cccccccc----------ccCCCccc----CCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCC
Confidence 999998872 22111110 00111111 113568999999999998888776544322111 11234
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045930 331 GSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVG-TNYTAIYARGSCAAFISGFMTFMSIGGFP 409 (661)
Q Consensus 331 ~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~-~~~~~i~~r~~~~~f~~~~~~~~s~~~~~ 409 (661)
.+..+.|.|+++|++|.|..+.||..++..++++.+++|+++|++||+++ .+..+.+.|+|++||...+.+|++++.++
T Consensus 433 ~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~ 512 (1391)
T KOG0065|consen 433 KYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIA 512 (1391)
T ss_pred ceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHH
Confidence 46689999999999999999999999999999999999999999999999 77778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 410 SFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMI 489 (661)
Q Consensus 410 ~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i 489 (661)
..++.||||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++||++++++||+++|.++++..++.++++++
T Consensus 513 ~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~i 592 (1391)
T KOG0065|consen 513 LTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFI 592 (1391)
T ss_pred HHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCC----------
Q 045930 490 ASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAID---------- 559 (661)
Q Consensus 490 ~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~---------- 559 (661)
++++++...|+.+|++.++++.+++||+|+.++||+| |+| ++|+||+.||+|+++.|||+|++++|..
T Consensus 593 a~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W-~~W-i~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~ 670 (1391)
T KOG0065|consen 593 ASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPW-FRW-IAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISI 670 (1391)
T ss_pred HHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchH-HHH-HHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccccc
Confidence 9999999999999999999999999999999999975 999 9999999999999999999999988861
Q ss_pred -----------CCCCCcCHHHHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045930 560 -----------RDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFREKA 611 (661)
Q Consensus 560 -----------~~~~~~~G~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 611 (661)
+|...+.|+++++..|+++..+ .|+|+||++|+.++|.++..+++-+.+..
T Consensus 671 ~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 671 ENKVCAATGATLGNDYVSGRDYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred ccccchhhccccCceEEecccccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1224467888887777776544 89999999999999999998877766543
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-51 Score=395.10 Aligned_cols=216 Identities=26% Similarity=0.424 Sum_probs=196.5
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
+.++++|++..+. ..++|+|||+++++||+++|+|||||||||||+||.|+..++ +|+|.++|....
T Consensus 1 ~mi~i~~l~K~fg------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 1 MMIEIKNLSKSFG------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKD 71 (240)
T ss_pred CeEEEEeeeEEeC------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhh
Confidence 3578999999885 367999999999999999999999999999999999998874 999999997532
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..++.+|+|+|+.+|||++||.||+.++...- .+.++++.+++..++|+.+||.+.+|.+++ +||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPA-----QLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----ccCcHHHHH
Confidence 23678999999999999999999999985421 257789999999999999999999999875 699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|+++++|||||+|||....++.+.+++||++|.|.||+||+. ....+.+|||+.|++|+++..|++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~ 222 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEE 222 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999999999999999996 58889999999999999999997654
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-49 Score=397.54 Aligned_cols=218 Identities=28% Similarity=0.390 Sum_probs=199.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
+++++++..+... .+....+|+|||++|++||++||+|.||||||||+++|.++..|+ +|+|.++|++..
T Consensus 2 I~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHH
Confidence 6899999888752 233457999999999999999999999999999999999999884 999999997642
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..+++||+++|+..|+...||.||+.|.+++. +.++++++++|.++++.+||++.+|+++. +||||||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~-----qLSGGQKQR 149 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPA-----QLSGGQKQR 149 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCch-----hcCcchhhH
Confidence 23678999999999999999999999998875 47899999999999999999999999875 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|+||++|||||.|||.++..|++.|+++.++ |.||+++||++ +.+.++||||.+|++|++++.|+..+
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHH
Confidence 99999999999999999999999999999999999999876 99999999996 68899999999999999999998764
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.8e-48 Score=405.94 Aligned_cols=221 Identities=36% Similarity=0.527 Sum_probs=197.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|++..++. .+.+|+||||++++||++|++||||||||||+|+|+|+.++ .+|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcCEeCccCHHH
Confidence 4678899988752 36799999999999999999999999999999999999988 49999999987532
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++++||++|++.+++.+||+|+|.|.+.++.+. .++.+++++++++.+||.+..+++++ +||+||||||+|
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kqrl~i 147 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVR-----TLSGGMKQRLSI 147 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHHHHHHH
Confidence 3567999999999999999999999999987432 25567789999999999986666664 699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG-RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g-~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
|+||+.+|++|||||||+|||+.++..+.+.|++++++| +||++|||++ +++..+||+|++|++|++++.|++++...
T Consensus 148 a~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 148 ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999987 8999999997 68999999999999999999998777555
Q ss_pred HHH
Q 045930 237 FFA 239 (661)
Q Consensus 237 ~f~ 239 (661)
.+.
T Consensus 227 ~~~ 229 (293)
T COG1131 227 KFG 229 (293)
T ss_pred hhc
Confidence 544
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.4e-48 Score=391.58 Aligned_cols=221 Identities=34% Similarity=0.461 Sum_probs=194.5
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
+.|+.+||++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|.+++. +|+|.++|++...
T Consensus 1 ~~L~~~~ls~~y~------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 1 MMLEVENLSFGYG------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSP 71 (258)
T ss_pred CeeEEEEEEEEEC------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCH
Confidence 4689999999986 378999999999999999999999999999999999999884 9999999987532
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..+.+|||||+......+||+|.+.++..-+... ....++.++.+++.|+.+|+.+.+++.+. +||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHH
Confidence 2468999999998888999999999874322111 11123335579999999999999999986 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|.||+||+++|++|+||||||.||...+.++++.+++++++ |+|||+++||++ ....+||++++|++|++++.|++++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcch
Confidence 99999999999999999999999999999999999999964 999999999984 7899999999999999999999987
Q ss_pred hhH
Q 045930 234 APT 236 (661)
Q Consensus 234 ~~~ 236 (661)
+..
T Consensus 226 vlT 228 (258)
T COG1120 226 VLT 228 (258)
T ss_pred hcC
Confidence 653
No 14
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-48 Score=380.63 Aligned_cols=216 Identities=26% Similarity=0.449 Sum_probs=198.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++|+|+|..+. ++++++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||++...
T Consensus 2 I~~~nvsk~y~------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYG------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcC------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHH
Confidence 68999998875 377999999999999999999999999999999999999984 9999999998642
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccccccCHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE--DCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.||||-|.-.|||++||.||+.+...+. ++++++++++++++|+.+||+ +.+++++ ++|||||+|||
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----~eLSGGQQQRV 144 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYP-----HELSGGQQQRV 144 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----hhcCcchhhHH
Confidence 2678999999999999999999999987764 578899999999999999996 4788876 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
.+||||+.+|++|++|||+++|||-++.++.+.++++.++ |+|||++|||. +|.++++|||.+|++|+++..++|++.
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999876 99999999995 799999999999999999999998765
Q ss_pred hH
Q 045930 235 PT 236 (661)
Q Consensus 235 ~~ 236 (661)
+.
T Consensus 224 l~ 225 (309)
T COG1125 224 LA 225 (309)
T ss_pred Hh
Confidence 43
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.1e-47 Score=380.17 Aligned_cols=208 Identities=31% Similarity=0.467 Sum_probs=182.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
++.+|++..+... +....+|++||++|++||+++|+||||||||||||+|+|+.+| .+|.|.++|++..
T Consensus 2 i~~~~v~k~y~~~--~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLG--GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccC--CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEcCcCCHHH
Confidence 5688999887642 1226799999999999999999999999999999999999988 4999999997532
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCccccccCHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD-RLIGNWHWRGISGGEK 152 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-~~vg~~~~~~LSgGer 152 (661)
.+++.+|||+|+..|+|++||+||+.+++.+. .....+.+++++++++.+||.+..+ +++ .+||||||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqq 148 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQ 148 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHH
Confidence 23567999999999999999999999887654 2233356778999999999997766 656 46999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||+|||||+.+|+++++||||.+||+.++..|++.|++++++ |+|||++|||| ++...|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999876 99999999997 68999999999999983
No 16
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-47 Score=382.06 Aligned_cols=204 Identities=31% Similarity=0.443 Sum_probs=187.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.+.++++++.+.. .++|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.......
T Consensus 3 ~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCC
Confidence 5788999988853 67999999999999999999999999999999999999984 99999999987555678
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++||+|++.++|.+||+||+.++...+ ..++++.++++++.|+.+||.+..|+++ ++|||||||||+|||||
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQRVaiARAL 145 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHHHHHHHHH
Confidence 999999999999999999999998775 2566777789999999999999999987 46999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
+.+|++|+||||++.||+.++..+.+.|.++.++ ++||+++|||. +|...++|||++|+++
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999998764 89999999996 6899999999999984
No 17
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-47 Score=383.09 Aligned_cols=218 Identities=31% Similarity=0.491 Sum_probs=188.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc--c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD--Y 79 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~--~ 79 (661)
.++++|+++.+.+ . ++|+|||+++++|++++|+||||||||||+|+|.|+++| .+|+|.++|++.... +
T Consensus 4 ~i~v~nl~v~y~~-----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p---~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 4 MIEVENLTVSYGN-----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP---SSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred EEEEeeeEEEECC-----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC---CcceEEEccccccccccC
Confidence 6899999999853 2 599999999999999999999999999999999999988 499999999875433 3
Q ss_pred CeEEEEecCCC--CCCCCCHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 80 GGVAYVTQENI--MLGTLTVRETIAYSAHLRLP--SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 80 ~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.+||||||... .-..+||+|.+..+..-+.+ ...++++ +++++++|+.+|+.+.+|+.+|+ |||||+|||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV 148 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRV 148 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHH-HHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHH
Confidence 68999999642 22346999999987433221 1223344 78899999999999999999985 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||+ ..+.++||+|++|++ ++++.|+++++.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 999999999999999999999999999999999999999999999999997 579999999999975 678999988754
Q ss_pred H
Q 045930 236 T 236 (661)
Q Consensus 236 ~ 236 (661)
+
T Consensus 227 ~ 227 (254)
T COG1121 227 T 227 (254)
T ss_pred C
Confidence 3
No 18
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.8e-47 Score=373.80 Aligned_cols=217 Identities=29% Similarity=0.453 Sum_probs=196.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
-++++++++.+. ++.|++|||++|++||+++|||||||||||||++|.|+++|. +|+|.++|++..
T Consensus 8 ~I~vr~v~~~fG------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 8 LIEVRGVTKSFG------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78 (263)
T ss_pred eEEEeeeeeecC------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHH
Confidence 478999998774 478999999999999999999999999999999999999984 999999998742
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGer 152 (661)
..++++|+++|...||..|||+||+.|..+-+ ...+++..++.+..-|+.+||... +|.++ .+|||||+
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----sELSGGM~ 151 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYP-----SELSGGMR 151 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----hhhcchHH
Confidence 12577999999999999999999999986543 356788889999999999999876 77765 56999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
||+++||||+.||+++|+||||+||||.++..+.+++++|.+. |.|++++|||. ++++..||++++|.+|+++..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999999999999999886 99999999996 689999999999999999999998
Q ss_pred CChh
Q 045930 232 KSAP 235 (661)
Q Consensus 232 ~~~~ 235 (661)
++..
T Consensus 231 ~el~ 234 (263)
T COG1127 231 EELL 234 (263)
T ss_pred HHHH
Confidence 7654
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-47 Score=398.17 Aligned_cols=217 Identities=28% Similarity=0.446 Sum_probs=200.0
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---c
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---L 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~ 77 (661)
+.|+++|++..+++ .. +|+|+|+++++||+++|+||||||||||||+|||+.+++ +|+|.++|+... .
T Consensus 2 ~~i~l~~v~K~yg~-----~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P 72 (338)
T COG3839 2 AELELKNVRKSFGS-----FE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPP 72 (338)
T ss_pred cEEEEeeeEEEcCC-----ce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh
Confidence 47899999998753 12 999999999999999999999999999999999999884 999999999764 2
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
..|.+|+|+|+..|||+|||+||+.|+++.+ ..++++++++|+++.+.++|++..|+++. +|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcc-----cCChhhHHHHHH
Confidence 3578999999999999999999999999876 56789999999999999999999999874 699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||||+++|+++++|||+|+||...+..+...|+++.++ |.|+|.+|||. .|+..++|||.+|++|++...|++.++-
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 99999999999999999999999999999999999876 89999999996 6899999999999999999999987653
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-47 Score=371.47 Aligned_cols=222 Identities=27% Similarity=0.413 Sum_probs=194.3
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
+.++++|++.++++ ++++|+|||++|++||++||+|||||||||||++|+|+..++ +|+|.+||....
T Consensus 2 ~~i~~~nl~k~yp~-----~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPG-----GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCC-----CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccch
Confidence 56899999999873 478999999999999999999999999999999999998874 899999996532
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccccc
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-----NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 147 (661)
..++++||++|++.+.+.+||.||+..+..-+.+. +.-.++.+..+-+.|+.+|+.+.+-++.++ |
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~-----L 148 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST-----L 148 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc-----C
Confidence 12578999999999999999999998775332221 122234456678899999999999988864 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
||||+|||+|||||+.+|++++.|||+++|||.++.++|+.|+++++ +|.|||++.||. +...++|||++-|++|+++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999987 599999999996 6788999999999999999
Q ss_pred EecCCCChhH
Q 045930 227 YFGEAKSAPT 236 (661)
Q Consensus 227 ~~G~~~~~~~ 236 (661)
|+|+++++.+
T Consensus 228 fDg~~~el~~ 237 (258)
T COG3638 228 FDGPASELTD 237 (258)
T ss_pred EeCChhhhhH
Confidence 9999987554
No 21
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-47 Score=363.91 Aligned_cols=215 Identities=30% Similarity=0.431 Sum_probs=197.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----LD 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~~ 78 (661)
|+.++++..+++ ..++++||||+++.||+++|+|||||||||+|++|++++.|+ +|.|+++|-+.. ..
T Consensus 2 l~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 2 LEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred eeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHH
Confidence 677888877753 345899999999999999999999999999999999999984 999999997642 23
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
+++||.++.+..++..||++|||.|.+++. ++++.+.+++++++.+.++|.+++|+++|+ +|.|+||||+||
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iA 145 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIA 145 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHH
Confidence 678999998889999999999999999885 678889999999999999999999999985 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+++|+++++||||||||..+...+.+.++++.++|++||++||.. +++.++||+|++|++|++++.|+.++.
T Consensus 146 RAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred HHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 999999999999999999999999999999999999999999999995 689999999999999999999997653
No 22
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-46 Score=397.07 Aligned_cols=216 Identities=28% Similarity=0.456 Sum_probs=198.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.++++|++..+. +..+++|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|++.. ..
T Consensus 5 ~l~i~~v~k~yg------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 5 ALEIRNVSKSFG------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75 (352)
T ss_pred eEEEEeeeeecC------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChh
Confidence 588999998874 367999999999999999999999999999999999999884 999999999864 34
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
+|.+|+|+|+-.|||+|||+||+.|+++++ ....+++++++|+++++.++|++.+++++. +|||||+|||++|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----qLSGGQqQRVALA 148 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPH-----QLSGGQQQRVALA 148 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChh-----hhChHHHHHHHHH
Confidence 688999999999999999999999998743 234567789999999999999999999874 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||. .|...++|||.+|++|++...|++++.
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence 9999999999999999999999999999999999875 99999999996 689999999999999999999998754
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-46 Score=378.42 Aligned_cols=219 Identities=27% Similarity=0.428 Sum_probs=198.1
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe---ecc-
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---KRR- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~---~~~- 76 (661)
|.+.++++++.++. ..+++|||+.|+.||++|++|||||||||||++|||+..|+ .|.|.+||+ +.+
T Consensus 1 m~i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 1 MSIRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSN 71 (345)
T ss_pred Cceeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhc
Confidence 67888888887753 56899999999999999999999999999999999999984 899999998 432
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
...++||||+|+..+|++|||.||+.|+++.+ ....++.+++.+++++|+.+.|++.+++++ .+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHH
Confidence 23478999999999999999999999999876 223456778899999999999999999976 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++||||+.+|++|+||||+++||..-+.++-+-|+++.++ |.|++++|||+ .|+.+++|||++|++|+|...|++++
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 99999999996 69999999999999999999999887
Q ss_pred hh
Q 045930 234 AP 235 (661)
Q Consensus 234 ~~ 235 (661)
+-
T Consensus 225 v~ 226 (345)
T COG1118 225 VY 226 (345)
T ss_pred Hh
Confidence 53
No 24
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=8.8e-46 Score=351.42 Aligned_cols=211 Identities=27% Similarity=0.410 Sum_probs=192.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
+.|+|++..|+. .+.+|+||||.+++||++-|+||||||||||||+|.+..+|+ .|+|++||.+..
T Consensus 2 I~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccc
Confidence 678999988764 367999999999999999999999999999999999999884 999999998742
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..+++||+|+||..+++..||.||+.|+.+.. +.++++++++|.++|+.+||.+.++..+ .+|||||+||
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LSGGEQQR 145 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLSGGEQQR 145 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccCchHHHH
Confidence 23678999999999999999999999998765 5778899999999999999999998876 4699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|+||||++.+|++|+.||||.+||+..+.+|++++.++.+.|.||+++||| ...+..+-.+++.|++|+++.+..
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999999999999999999999 456778889999999999987654
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.6e-45 Score=387.13 Aligned_cols=216 Identities=26% Similarity=0.391 Sum_probs=193.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++ ++.+|+|||+++++||++||+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 7 ~i~i~~l~k~~~------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 7 PIDFRNVEKRYG------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARH 77 (306)
T ss_pred eEEEEeEEEEEC------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHH
Confidence 478999999874 256999999999999999999999999999999999999884 8999999987532
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||++|++.+++.+||+||+.+.+.++ +.+..+.+++++++++.++|.+..++.++ +||||||||++|
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~l 149 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTL 149 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHH
Confidence 2467999999999999999999999877653 23455566788999999999999999885 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
|+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+|++|++|++++.|++++..
T Consensus 150 a~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999988899999999996 5899999999999999999999977653
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.4e-45 Score=389.37 Aligned_cols=218 Identities=28% Similarity=0.397 Sum_probs=193.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+..+.+|+|||+++++||+++|+||||||||||+++|+|+.++. +|+|.++|++...
T Consensus 2 I~~~~lsk~y~~--~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQ--GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECC--CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 789999998853 112357999999999999999999999999999999999999884 8999999987531
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.+||++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|+.++ +||||||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~-----~LSgGqkQR 148 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPS-----NLSGGQKQR 148 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHH
Confidence 2467999999999999999999999976542 24566777889999999999998888775 699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |.|||++||++ +.+.++||++++|++|++++.|++++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999876 99999999996 57889999999999999999998754
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
.
T Consensus 228 v 228 (343)
T TIGR02314 228 I 228 (343)
T ss_pred H
Confidence 3
No 27
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-45 Score=390.99 Aligned_cols=216 Identities=25% Similarity=0.406 Sum_probs=194.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---D 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~ 78 (661)
.|+++|+++.++. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... .
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCCCHH
Confidence 5899999998731 25699999999999999999999999999999999999987 48999999987532 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|++.++|++||+||+.|..+.+ ..++++.+++++++++.+||++..|++++ +|||||||||+||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvalA 146 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPR-----ELSGGQRQRVAMG 146 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987643 24566677889999999999999998875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++|||+ .++..++|++++|++|+++..|++++.
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999999999999876 99999999996 689999999999999999999997654
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.1e-44 Score=389.72 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=194.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++.. ..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 5899999998852 56999999999999999999999999999999999999874 899999998753 12
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..+||.+||+||+.|+.+.+ ..++++.+++++++++.+||++..|+.+. +|||||||||+||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~QRvaLA 146 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPG-----QLSGGQQQRVALA 146 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987643 34566778899999999999999998875 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++|||+ .++..++|++++|++|+++..|++++.
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999875 99999999997 589999999999999999999997654
No 29
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=369.55 Aligned_cols=214 Identities=31% Similarity=0.488 Sum_probs=187.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFG------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhh
Confidence 46899999874 256999999999999999999999999999999999999874 8999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+...... ..+.++.+++++++++.+||.+..++.++ +||||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 144 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKR 144 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHH
Confidence 24569999999999999999999998754321 23455556788999999999888888775 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999874 89999999997 57889999999999999999987543
No 30
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=387.30 Aligned_cols=215 Identities=23% Similarity=0.461 Sum_probs=194.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+.+ +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++.. ..
T Consensus 6 ~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 5889999998742 56999999999999999999999999999999999999884 899999998753 22
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..++|++||+||+.|..+.+ ..++++.+++++++++.+||.+..|+.+. .|||||||||+||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~-----~LSgGq~QRVaLA 148 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVD-----QISGGQQQRVALA 148 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987653 34566778899999999999999888874 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||+ .++..++|++++|++|+++..|++++.
T Consensus 149 RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999875 89999999996 689999999999999999999998654
No 31
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-45 Score=358.40 Aligned_cols=220 Identities=28% Similarity=0.377 Sum_probs=191.0
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
+.|+.+||++.++.. +...++|+|||+++.+||.++|+|+||||||||.++|+|+.++ .+|+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~--~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p---~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 2 TLLSVRNLSIVYGGG--KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP---SSGSILLDGKPLAPKKR 76 (252)
T ss_pred ceEEEeceEEEecCC--cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC---CCceEEECCcccCcccc
Confidence 468999999999752 1223699999999999999999999999999999999999988 49999999976432
Q ss_pred ---ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHH
Q 045930 78 ---DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 ---~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGe 151 (661)
.++.|.+|+||+ .+.|..||++.|.-+.+.. +.++ .++++.++++.+||.+ .+++++ .+|||||
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~--~~~~i~~~L~~VgL~~~~l~R~P-----~eLSGGQ 146 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSK--SQQRIAELLDQVGLPPSFLDRRP-----HELSGGQ 146 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccH--HHHHHHHHHHHcCCCHHHHhcCc-----hhcChhH
Confidence 357899999997 5889999999999887642 3333 3445999999999964 677766 4699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||++|||||+.+|++||||||||+||+..+.+|+++|.++.++ |.|.|+++||. ..+..+||||++|++|++++.++
T Consensus 147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeec
Confidence 99999999999999999999999999999999999999999886 89999999995 68999999999999999999999
Q ss_pred CCChhH
Q 045930 231 AKSAPT 236 (661)
Q Consensus 231 ~~~~~~ 236 (661)
.++...
T Consensus 226 ~~~l~~ 231 (252)
T COG1124 226 TEELLS 231 (252)
T ss_pred hhhhhc
Confidence 876543
No 32
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-45 Score=352.94 Aligned_cols=232 Identities=26% Similarity=0.412 Sum_probs=198.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~--- 76 (661)
.++.+||++.|. ++.+|+|||+.|++++++|+||||||||||||+++.... -++++.+|+|.++|+...
T Consensus 7 ~~~~~~l~~yYg------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 7 AIEVRDLNLYYG------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred eeEecceeEEEC------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 467889999885 377999999999999999999999999999999999875 356788999999998742
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHH
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGe 151 (661)
..++++|+|+|.|.-|| +|++||+.|+.+++- ...++.+++|++.|+.-.|. ++.|++-.+ ..+|||||
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s--a~~LSGGQ 154 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHKS--ALGLSGGQ 154 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhCC--ccCCChhH
Confidence 12678999999999999 899999999988763 33377889999999999984 456665332 34799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
+||++|||||+.+|+||+||||||+|||.++.+|-+++.+|++ .-|||++||.+ ....+..|+..++..|++|++|++
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCH
Confidence 9999999999999999999999999999999999999999985 68999999996 589999999999999999999997
Q ss_pred CChhHHHHhcCCCCCCCCCchhHH
Q 045930 232 KSAPTFFAEAGFPCPTRRNPSDHF 255 (661)
Q Consensus 232 ~~~~~~f~~~g~~~~~~~npad~~ 255 (661)
++. |..|.+.-..||+
T Consensus 233 ~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 233 DKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred Hhh--------hcCccHHHHHHHh
Confidence 653 3445554455543
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.7e-44 Score=387.44 Aligned_cols=215 Identities=26% Similarity=0.431 Sum_probs=193.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee--eEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT--GNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~--G~i~~~g~~~~~-- 77 (661)
.|+++|+++.+.. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. + |+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~ 75 (362)
T TIGR03258 5 GIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAP 75 (362)
T ss_pred EEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCC
Confidence 4789999998752 46999999999999999999999999999999999999874 7 999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++||+|+..++|.+||+||+.|+.+.+ ..++++.+++++++++.+||++..|++++ +|||||||||+
T Consensus 76 ~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~QRva 147 (362)
T TIGR03258 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPA-----QLSGGMQQRIA 147 (362)
T ss_pred HHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHHHHHHH
Confidence 2467999999999999999999999987643 34566777889999999999999999875 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD--GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~--g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |.|+|++|||+ +++..++|+|++|++|+++..|++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999876 79999999996 689999999999999999999997654
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.8e-44 Score=385.62 Aligned_cols=219 Identities=25% Similarity=0.386 Sum_probs=194.5
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.+++ +|+|.++|++...
T Consensus 1 ~~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 1 MSIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHA 71 (353)
T ss_pred CEEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 67899999998752 56999999999999999999999999999999999999874 8999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++.++|.+||+||+.|....+.. ...+.++.+++++++++.+||++..|+++. +|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHH
Confidence 246799999999999999999999998654211 123456667889999999999998888875 69999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++ .++..++|++++|++|++++.|++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999876 89999999996 689999999999999999999987654
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.6e-44 Score=383.09 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=193.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++||++.++ ++.+|+||||++++||++||+||||||||||+++|+|+++++ +|+|.++|.+...
T Consensus 41 ~i~i~nl~k~y~------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 41 AIDLAGVSKSYG------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARL 111 (340)
T ss_pred eEEEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHH
Confidence 478899999875 256999999999999999999999999999999999999884 8999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||++|++.+++.+||+||+.+.+.++ ..+..+.+++++++++.+||.+..++.++ +||||||||++|
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~l 183 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTL 183 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHH
Confidence 2467999999999999999999999866543 23344556678899999999999999886 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
|+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+. +++.++||+|++|++|++++.|++++...
T Consensus 184 A~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 184 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999988899999999996 68999999999999999999999876543
No 36
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.3e-44 Score=360.42 Aligned_cols=207 Identities=26% Similarity=0.404 Sum_probs=181.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPG----GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecC----CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEehhhcChhH
Confidence 789999998852 124699999999999999999999999999999999999887 48999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||.+..++.++ +||||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 146 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPM-----QLSGGEQQR 146 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHH
Confidence 2357999999999999999999999876542 22344556778999999999988888775 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999987799999999997 578889999999999974
No 37
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-44 Score=359.04 Aligned_cols=209 Identities=32% Similarity=0.494 Sum_probs=183.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++... .+
T Consensus 1 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP---DSGEILIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcCcCchhh
Confidence 468899988742 5699999999999999999999999999999999999887 48999999986431 23
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.++ .||||||||++||+
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~ 143 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALAR 143 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHH
Confidence 57999999999999999999998875432 22344556678999999999988888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 144 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 144 ALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999874 89999999997 5788999999999999998765
No 38
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-44 Score=359.01 Aligned_cols=216 Identities=29% Similarity=0.392 Sum_probs=186.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.++. ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++....++.+
T Consensus 1 l~~~~l~~~~~~--~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGG--GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCC--CCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECccccCcE
Confidence 468999988752 11125699999999999999999999999999999999999887 4899999998764445679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|++.+++.+||+||+.+....+ ....++..++++++++.+||++..++.++ +||||||||++||++|+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~ 147 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALA 147 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHH
Confidence 99999999999999999999876543 23344456778999999999988888775 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecCCC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLS--GGETVYFGEAK 232 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~--~G~~v~~G~~~ 232 (661)
.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|+ +|+++..++.+
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999999999999999999999999965 489999999997 47889999999999 79999888754
No 39
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-44 Score=364.55 Aligned_cols=218 Identities=24% Similarity=0.382 Sum_probs=188.6
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 1 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 1 MSIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGEDATDVPV 71 (239)
T ss_pred CEEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCc
Confidence 67999999998852 5699999999999999999999999999999999999887 48999999987431
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..++.++ +||||||||++
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHH
Confidence 235799999999999999999999987543210 001233445678899999999888888775 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 999999999999999999999999999999999999875 89999999997 57889999999999999999987643
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-44 Score=360.47 Aligned_cols=213 Identities=27% Similarity=0.399 Sum_probs=187.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----LD 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~~ 78 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+.. ..
T Consensus 1 i~~~~~~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYG------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEEC------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecCcChHHH
Confidence 46889998874 25699999999999999999999999999999999999887 4899999997642 12
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||++..++.++ .||||||||++||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la 143 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIA 143 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHH
Confidence 357999999999999999999999876543 23344556678999999999988888775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|+++..|++++
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999999999999886 89999999997 57889999999999999999887643
No 41
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=7.5e-44 Score=376.94 Aligned_cols=217 Identities=29% Similarity=0.394 Sum_probs=191.0
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
+.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSYG------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEeC------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHH
Confidence 3588999999874 256999999999999999999999999999999999999874 8999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.+||++|++.+++.+||+||+.+..... ..+.++.+++++++++.++|.+..++.++ +||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~ 145 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLT 145 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHH
Confidence 2467999999999999999999998765432 23344556678899999999998888875 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999988899999999997 5888999999999999999999876543
No 42
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-44 Score=363.48 Aligned_cols=216 Identities=31% Similarity=0.445 Sum_probs=193.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++|+++.++. .+.+|+|+|+.+++||.++|+|+||||||||+++|+|+++|. +|+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPG-----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCC-----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhH
Confidence 5789999999864 167999999999999999999999999999999999999984 899999998743
Q ss_pred -cccCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 -LDYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 -~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..++.+|||+|++ ..+-.-||.|.+.|+.... +.+.++.+++++++++.+|+.+.+++.+. .||||||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~-----~LSGGqkqR 146 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPF-----NLSGGQKQR 146 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCcc-----ccCCcceee
Confidence 2367899999997 3344559999999997653 46777899999999999999999988774 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+||.+|+.+|++|+|||||+|||+..+..+++.++++.++ |+|||++|||. +.+..++|++++|++|+++++|++++
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHH
Confidence 99999999999999999999999999999999999999987 79999999995 68999999999999999999998654
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
+
T Consensus 226 i 226 (235)
T COG1122 226 I 226 (235)
T ss_pred H
Confidence 3
No 43
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.5e-44 Score=384.66 Aligned_cols=215 Identities=25% Similarity=0.414 Sum_probs=193.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+.. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++.. ..
T Consensus 14 ~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 14 LVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84 (375)
T ss_pred eEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 4789999998752 56999999999999999999999999999999999999874 899999998753 12
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++||+|++.++|.+||+||+.|+.+.+ ..++.+.+++++++++.+||++..|+++. +|||||||||+||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~QRVaLA 156 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQRVAIA 156 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987543 24556667789999999999999999875 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||+|||..++..+.+.|++++++ |.|+|++|||+ .++..++|++++|++|+++..|++++.
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999875 99999999996 689999999999999999999987654
No 44
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=383.63 Aligned_cols=215 Identities=26% Similarity=0.406 Sum_probs=192.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---D 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~ 78 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++... .
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHh
Confidence 5899999998742 56999999999999999999999999999999999999874 8999999987531 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||++..++.++ +|||||||||+||
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLA 145 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIG 145 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHH
Confidence 457999999999999999999999986543 23455667789999999999988888875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++|||+ +++..+||++++|++|+++..|++++.
T Consensus 146 raL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999875 89999999996 588999999999999999999987654
No 45
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.5e-43 Score=374.16 Aligned_cols=217 Identities=28% Similarity=0.446 Sum_probs=193.2
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++ ++.+|+|+||++++||++||+|||||||||||++|+|+.++. +|+|.++|++...
T Consensus 1 ~~l~~~~l~~~~~------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 1 MSIRVSSLTKLYG------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPK 71 (301)
T ss_pred CEEEEEEEEEEEC------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChH
Confidence 6789999999884 256999999999999999999999999999999999998874 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.+||++|++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||++..|+.++ .||||||||++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHH
Confidence 2467999999999999999999999877653 23445556778999999999999998875 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|+.++...
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999975 79999999996 58999999999999999999999776543
No 46
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=370.07 Aligned_cols=221 Identities=27% Similarity=0.396 Sum_probs=189.2
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.|+++|+++.++.. .+..+.+|+|||+++++||++||+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~y~~~-~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 1 MSIKIENLTHIYMEG-TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKV 76 (287)
T ss_pred CEEEEEEEEEECCCC-CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCc
Confidence 468999999988531 111256999999999999999999999999999999999999884 8999999987531
Q ss_pred ----ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccccccCHH
Q 045930 78 ----DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE--DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSgG 150 (661)
.++.+||++|++. .+...||+||+.+..... +.++++.+++++++++.+||. +..|+.+ +.||||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgG 148 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FELSGG 148 (287)
T ss_pred cHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----ccCCHH
Confidence 1457999999863 333579999999875432 345666778899999999997 6677766 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++..+||++++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 99999999996 5788899999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
++++.
T Consensus 228 ~~~~~ 232 (287)
T PRK13637 228 TPREV 232 (287)
T ss_pred CHHHH
Confidence 87764
No 47
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.2e-43 Score=360.84 Aligned_cols=213 Identities=27% Similarity=0.472 Sum_probs=186.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYG------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP---DSGKILLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeC------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccCCHhH
Confidence 46889998874 24699999999999999999999999999999999999987 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+|+++..++.++ .||||||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~ 143 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVE 143 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHH
Confidence 1346999999999999999999999865432 22344556678899999999988888775 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.+++|++++|++|++++.|+.++
T Consensus 144 la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 144 IARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 99999999999999999999999999999999999988899999999997 47999999999999999999887653
No 48
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2e-43 Score=354.67 Aligned_cols=209 Identities=26% Similarity=0.428 Sum_probs=184.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+... .+
T Consensus 1 i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCccc
Confidence 468899988752 4699999999999999999999999999999999999887 48999999987531 23
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||.+..++.++ .||||||||++||+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~lar 143 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGR 143 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHH
Confidence 57999999999999999999999875432 23345556778999999999988888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999875 89999999996 5788999999999999999876
No 49
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.3e-43 Score=361.58 Aligned_cols=216 Identities=29% Similarity=0.431 Sum_probs=186.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP---TSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEECCCCCHHH
Confidence 468899988742 4699999999999999999999999999999999999887 48999999987431
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN-------MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++.+||+||+.+....+.... ...++..++++++++.+||++..++.++ +|||
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 146 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG-----ELSY 146 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh-----hCCH
Confidence 13469999999999999999999998764321110 0134455678999999999988888764 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeec
Confidence 999999999999999999999999999999999999999999987899999999997 5788999999999999999988
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
++++
T Consensus 226 ~~~~ 229 (236)
T cd03219 226 TPDE 229 (236)
T ss_pred CHHH
Confidence 7654
No 50
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=379.31 Aligned_cols=218 Identities=29% Similarity=0.433 Sum_probs=191.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. .+..+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 2 i~i~~l~~~y~~--~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQ--GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCC--CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHH
Confidence 789999998852 111357999999999999999999999999999999999999874 8999999987531
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ +.+.++.+++++++++.+||.+..++.++ +||||||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qR 148 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPA-----QLSGGQKQR 148 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHH
Confidence 1357999999999999999999999876543 23455666789999999999988888764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 57889999999999999999998654
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
.
T Consensus 228 ~ 228 (343)
T PRK11153 228 V 228 (343)
T ss_pred H
Confidence 3
No 51
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.1e-43 Score=375.43 Aligned_cols=203 Identities=26% Similarity=0.419 Sum_probs=182.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----ccCeEEEEecCCCCCCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----DYGGVAYVTQENIMLGTLT 96 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~~~~i~yv~Q~~~l~~~lT 96 (661)
+.+|+|+||++++||++||+||||||||||+++|+|++++. +|+|.++|.+... .++.+||++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 56999999999999999999999999999999999999874 8999999987531 2456999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
|+||+.+.+.++ +.+..+.+++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876653 23445556788999999999988888875 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 177 LDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++..
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999988899999999996 5889999999999999999999876643
No 52
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-43 Score=382.02 Aligned_cols=215 Identities=25% Similarity=0.382 Sum_probs=193.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+.. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++.. ..
T Consensus 19 ~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 19 LLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPY 89 (377)
T ss_pred eEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 4889999998742 46999999999999999999999999999999999999874 899999998753 23
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|++.+||++||.||+.|..+.+ ..++.+.+++++++++.+||.+..++.+. +|||||||||+||
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~QRVaLA 161 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQRVALA 161 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHH
Confidence 567999999999999999999999987643 24566777889999999999998888875 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++|||+ .++..++|++++|++|+++..|++++.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence 9999999999999999999999999999999998764 89999999996 589999999999999999999997654
No 53
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-45 Score=349.69 Aligned_cols=218 Identities=24% Similarity=0.453 Sum_probs=194.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|..+||..+++ ++++++|||+++++||+++++|||||||||.+.++.|+.+++ +|+|.+||.+...
T Consensus 4 ~L~a~~l~K~y~------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 4 TLVAENLAKSYK------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMH 74 (243)
T ss_pred EEEehhhhHhhC------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChH
Confidence 567778877765 378999999999999999999999999999999999999985 9999999987531
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.+..+||+||++..|..|||+||+......+.. ...+.+.+.+++++|+++.|.+++|++.. .||||||||+
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~ 148 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRV 148 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHH
Confidence 245799999999999999999999988877631 22334566678999999999999999875 4999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
.|||||+.+|+.++||||++|.||-+..+|.++++.|++.|..|++|-|+.. |...+|||.+++.+|++.++|++++..
T Consensus 149 EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 149 EIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999974 899999999999999999999987654
No 54
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-43 Score=370.15 Aligned_cols=231 Identities=26% Similarity=0.357 Sum_probs=194.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
|+++|+++.++.. ....+.+|+|||+++++||+++|+||||||||||+++|+|++++. +|+|.++|.+..
T Consensus 2 i~~~~v~~~y~~~-~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPN-SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCC-CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 7899999998631 111246999999999999999999999999999999999999874 899999998742
Q ss_pred ---cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHH
Q 045930 77 ---LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgG 150 (661)
..++.+|||+|++ .+++ .||.|++.|..... +.++++.++++.++++.+||. +..++.+ +.||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgG 148 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP-----FELSGG 148 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----ccCCHH
Confidence 1245799999986 4555 59999999876432 245666778899999999996 4667665 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||+|++|++|++++.|+
T Consensus 149 qkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999987899999999997 57889999999999999999999
Q ss_pred CCChh---HHHHhcCCCCCC
Q 045930 231 AKSAP---TFFAEAGFPCPT 247 (661)
Q Consensus 231 ~~~~~---~~f~~~g~~~~~ 247 (661)
+++.. +.+...|+.+|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 228 PSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHHcCHHHHHHcCCCCCh
Confidence 87643 344556776654
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-43 Score=353.72 Aligned_cols=209 Identities=28% Similarity=0.497 Sum_probs=183.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-cccCe
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-LDYGG 81 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~~~~~ 81 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|++.. ..++.
T Consensus 1 l~~~~l~~~~~------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFG------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEEC------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCchhHHHHcc
Confidence 46889998874 24699999999999999999999999999999999999887 4899999998643 22457
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|++.+++.+||+||+.+....+ ..+..+.+++++++++.+||++..++.++ +||||||||++||++|
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al 143 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKVQFIAAV 143 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHHHHHHHH
Confidence 999999999999999999999876543 22344556778999999999988887764 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999987789999999996 5788899999999999998754
No 56
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-43 Score=359.36 Aligned_cols=217 Identities=28% Similarity=0.430 Sum_probs=187.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +...+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 2 i~~~~l~~~~~~--~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGD--TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccC--CCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCHHH
Confidence 788999998753 10113799999999999999999999999999999999999987 48999999987431
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+||.+..++.+. .||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 148 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPA-----QLSGGQKQR 148 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChh-----hCCHHHHHH
Confidence 1357999999999999999999999875533 23344456678999999999988888764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|++++.|+.++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 57889999999999999999987543
No 57
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.3e-43 Score=354.42 Aligned_cols=213 Identities=30% Similarity=0.492 Sum_probs=185.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
++++|+++.++. ....+++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++... .
T Consensus 2 l~~~~v~~~~~~--~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRD--VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCC--CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHH
Confidence 688999998753 111126999999999999999999999999999999999998874 8999999987531 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..++.++ .||||||||++||
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la 148 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIA 148 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHHHHHH
Confidence 457999999999999999999998865442 23345566788999999999988888775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999987799999999997 5788999999999999998754
No 58
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-43 Score=368.53 Aligned_cols=220 Identities=25% Similarity=0.330 Sum_probs=188.1
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
|.++++|+++.++... +..+++|+|||+++++||+++|+||||||||||+++|+|+.++. +|+|.++|++..
T Consensus 1 ~~l~~~~l~~~y~~~~-~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (290)
T PRK13634 1 MDITFQKVEHRYQYKT-PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKK 76 (290)
T ss_pred CEEEEEEEEEEECCCC-cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 4689999999985311 11256999999999999999999999999999999999999874 899999998652
Q ss_pred -----cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 77 -----LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
..++.+||++|++ .++ ..||+||+.|..... ..+.++.+++++++++.+||. +..++.++ .||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LS 147 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPF-----ELS 147 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcc-----cCC
Confidence 1135699999986 455 469999999875432 345566667899999999997 56777664 699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 99999999996 57889999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|++++.
T Consensus 227 ~g~~~~~ 233 (290)
T PRK13634 227 QGTPREI 233 (290)
T ss_pred ECCHHHH
Confidence 9987654
No 59
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.6e-43 Score=354.62 Aligned_cols=214 Identities=31% Similarity=0.513 Sum_probs=186.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
|+++|+++.++. + .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~---~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKK---G-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCC---C-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccchHHH
Confidence 478899988742 1 25699999999999999999999999999999999999887 48999999987431 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.++ .||||||||++||
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la 145 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLA 145 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHH
Confidence 456999999999999999999999876543 23344456678999999999888888765 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 146 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999999999999999999999999999999976 59999999997 47888999999999999999987654
No 60
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.6e-43 Score=356.41 Aligned_cols=214 Identities=28% Similarity=0.386 Sum_probs=183.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCceeeEEEECCeeccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-----SGNVVMTGNVLLNGKKRRL 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-----~~~~~~~G~i~~~g~~~~~ 77 (661)
|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhhh
Confidence 468899988742 46999999999999999999999999999999999998 66 48999999986421
Q ss_pred -------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHH
Q 045930 78 -------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.++ .+||+||+.+....+. .....+.+++++++++.+||.+..++.+. +++||||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG 145 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGG 145 (227)
T ss_pred cchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHH
Confidence 235799999999888 7999999998754321 11223345678899999999887776531 2469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++ .++.++||++++|++|++++.|+
T Consensus 146 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 146 QQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999999999999887 9999999997 57889999999999999999998
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 224 ~~~ 226 (227)
T cd03260 224 TEQ 226 (227)
T ss_pred ccc
Confidence 764
No 61
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.2e-43 Score=354.52 Aligned_cols=208 Identities=28% Similarity=0.438 Sum_probs=178.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. ....+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~--~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGG--GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecC--CCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCEehhhcchhH
Confidence 468999988752 11115699999999999999999999999999999999999987 48999999986421
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+||++..++.++ .|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 147 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPS-----ELSGGQQQ 147 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChh-----hcCHHHHH
Confidence 1356999999999999999999999876543 22334455678999999999988888764 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. .||++++|++|++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 148 RVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999999999999999987 5899999999974 565 9999999999974
No 62
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-43 Score=369.41 Aligned_cols=221 Identities=23% Similarity=0.328 Sum_probs=188.7
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
|.|+++|+++.++... .....+|+|||+++++||++||+||||||||||+++|+|.+++. +|+|.++|++..
T Consensus 1 m~i~~~~l~~~y~~~~-~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 1 MQIKVKNIVKIFNKKL-PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKK 76 (305)
T ss_pred CEEEEEEEEEEECCCC-CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccc
Confidence 5689999999986311 11246999999999999999999999999999999999999874 899999876421
Q ss_pred -------------------------cccCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC
Q 045930 77 -------------------------LDYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130 (661)
Q Consensus 77 -------------------------~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg 130 (661)
..++.+|||+|++ ..+...||+||+.|..... +.++++.+++++++++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~g 153 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVG 153 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 1145699999985 2334579999999876532 3456677788999999999
Q ss_pred CC-ccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 045930 131 LE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE 209 (661)
Q Consensus 131 L~-~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~ 209 (661)
|. +..++.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ ++
T Consensus 154 L~~~~~~~~~~-----~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~ 227 (305)
T PRK13651 154 LDESYLQRSPF-----ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DN 227 (305)
T ss_pred CChhhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HH
Confidence 96 67787764 5999999999999999999999999999999999999999999999987799999999996 57
Q ss_pred HHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 210 VFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 210 i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+.++||++++|++|++++.|++++.
T Consensus 228 ~~~~adrv~vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 228 VLEWTKRTIFFKDGKIIKDGDTYDI 252 (305)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHH
Confidence 8899999999999999999987654
No 63
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-43 Score=334.64 Aligned_cols=211 Identities=28% Similarity=0.463 Sum_probs=185.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---ccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~ 79 (661)
+..+++++.|.. .==..++++++||++||+||||||||||||+|+|...| .+|+|++||++.. ...
T Consensus 2 l~L~~V~~~y~~--------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~t~~~P~~ 70 (231)
T COG3840 2 LALDDVRFSYGH--------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPAE 70 (231)
T ss_pred ccccceEEeeCc--------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC---CCceEEEcCeecCcCCccc
Confidence 456778887753 11257889999999999999999999999999999988 4999999999753 234
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+-++.++||.++|..|||.+|+.++..-.+ .. .++.+++++.++..+||..+.+++.+ +|||||||||++||
T Consensus 71 RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALAR 142 (231)
T COG3840 71 RPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALAR 142 (231)
T ss_pred CChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHH
Confidence 679999999999999999999998754221 12 34557789999999999999999987 49999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+|+++-+||+||||+|.|||.-+.+....+.+++++ +.|++++||+| +++..+.|+++++++|++.+.|+.++
T Consensus 143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHH
Confidence 999999999999999999999999999999999875 89999999998 58999999999999999999998764
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-43 Score=358.13 Aligned_cols=217 Identities=29% Similarity=0.425 Sum_probs=183.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEeccccCHhH
Confidence 468899987742 15699999999999999999999999999999999999887 48999999986431
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRL-----PSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++.+||+||+.+...... ......++..++++++++.+||.+..++.++ +|||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 147 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD-----QLSG 147 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc-----cCCH
Confidence 13569999999999999999999987542110 0011123345678899999999888787764 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999999865 89999999997 578889999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 227 ~~~~~ 231 (241)
T cd03256 227 GPPAE 231 (241)
T ss_pred cCHHH
Confidence 87654
No 65
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=362.18 Aligned_cols=215 Identities=26% Similarity=0.351 Sum_probs=187.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHH
Confidence 4789999998742 246999999999999999999999999999999999999874 8999999987531
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. .++..||.||+.|..... ..++.+.+++++++++.+||.+..++.++ .||||||||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv 147 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRV 147 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHH
Confidence 1356999999963 445689999999865422 23455556778999999999988888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999987799999999996 57889999999999999999998753
No 66
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-42 Score=356.14 Aligned_cols=214 Identities=24% Similarity=0.398 Sum_probs=186.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFG------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEEC------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCChhH
Confidence 78999999874 25699999999999999999999999999999999999887 48999999987431
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+..... ......+..+++.++++.+||++..|+.+. .||||||||+
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv 145 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYPS-----ELSGGQQQRV 145 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcChh-----hcCHHHHHHH
Confidence 1356999999999999999999998764211 123345556778999999999888888764 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|+.++
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 146 AIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQV 222 (240)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHH
Confidence 999999999999999999999999999999999999987799999999997 57888999999999999999987653
No 67
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=4.9e-43 Score=354.00 Aligned_cols=211 Identities=27% Similarity=0.447 Sum_probs=182.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCCCCHHH
Confidence 468899987742 4699999999999999999999999999999999999987 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+..... . ..+.+++++++++.+ ++.+..++.++ .||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~--~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv 141 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYAR---R--RAKRKARLERVYELFPRLKERRKQLAG-----TLSGGEQQML 141 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhc---C--chhHHHHHHHHHHHHHhhhhhhhCchh-----hCCHHHHHHH
Confidence 1356999999999999999999999875432 1 223345677888888 57777777764 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|++++
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHH
Confidence 999999999999999999999999999999999999987889999999996 57889999999999999999887543
No 68
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=9.4e-43 Score=350.08 Aligned_cols=205 Identities=30% Similarity=0.443 Sum_probs=179.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~~-----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYPG-----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeCC-----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCHHH
Confidence 789999998741 24699999999999999999999999999999999999887 48999999986431
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||.+..++.++ .||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 145 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPE-----QLSGGEQQR 145 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHH
Confidence 2357999999999999999999999875532 23344456778999999999887787764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999987799999999997 57888999999999985
No 69
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=352.13 Aligned_cols=215 Identities=24% Similarity=0.347 Sum_probs=183.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ....+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~--~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQE--GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCC--CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCCHH
Confidence 4789999998753 11124699999999999999999999999999999999999887 48999999987431
Q ss_pred ----c-cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 78 ----D-YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 ----~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
. ++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.++ .||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~ 151 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPS-----ELSGGER 151 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHH
Confidence 1 256999999999999999999999875432 22344556778999999999988887764 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.. +|++++|++|++++.|+.
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999999999999976 589999999997 45555 589999999999988874
No 70
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=9.3e-43 Score=349.98 Aligned_cols=206 Identities=27% Similarity=0.410 Sum_probs=180.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHH
Confidence 468899988742 24699999999999999999999999999999999999887 48999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||++..++.++ +||||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 144 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPA-----ELSGGEQQR 144 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHH
Confidence 2356999999999999999999999876542 23345556778999999999988888764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++
T Consensus 145 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999987799999999997 578889999999999974
No 71
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.4e-42 Score=351.93 Aligned_cols=221 Identities=43% Similarity=0.728 Sum_probs=186.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--ccc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDY 79 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~ 79 (661)
++.|+|+++.+++.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|.++++...+|+|.++|.+.. ..+
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhc
Confidence 478999999986411 1367999999999999999999999999999999999998721114899999998753 235
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE-AITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
+.++|++|++.+++.+||+||+.+.+....+.....+....++++ .++.+++.+..++.++ .||||||||++||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 155 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK-----GISGGERRRVSIA 155 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccccc-----CcCHHHHHHHHHH
Confidence 679999999999999999999998765432222222233344565 8999999888887764 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++..++.++||++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999755799999999999999998765
No 72
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=356.03 Aligned_cols=214 Identities=24% Similarity=0.352 Sum_probs=186.9
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
|.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 1 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 1 MSIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CEEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccc
Confidence 67999999998752 4699999999999999999999999999999999999887 4899999998641
Q ss_pred -------cccCeEEEEecCCCCCCCCCHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 77 -------LDYGGVAYVTQENIMLGTLTVRETIAYS-AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 -------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++.+||.||+.+. .... +...++..++++++++.+||.+..++.++ .||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPL-----HLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 1135799999999999999999999753 2221 22344456678999999999888888764 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987799999999997 578889999999999999999
Q ss_pred cCCC
Q 045930 229 GEAK 232 (661)
Q Consensus 229 G~~~ 232 (661)
|+.+
T Consensus 223 ~~~~ 226 (242)
T PRK11124 223 GDAS 226 (242)
T ss_pred CCHH
Confidence 8754
No 73
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=7.7e-43 Score=349.30 Aligned_cols=205 Identities=28% Similarity=0.446 Sum_probs=180.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---ccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~ 79 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++.. ..+
T Consensus 1 l~~~~l~~~~~------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYG------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEEC------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCCcccchHHHH
Confidence 46889998874 25699999999999999999999999999999999999887 4899999998642 124
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+....+ .. .+++++++++.+||.+..++.++ .|||||||||+||+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~ 139 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIAL 139 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHHHHHH
Confidence 56999999999999999999998875432 11 13567889999999988888765 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 140 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 140 ALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999988899999999997 5788899999999999998765
No 74
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=356.68 Aligned_cols=214 Identities=28% Similarity=0.466 Sum_probs=185.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCeEcCcCChHH
Confidence 468899988742 14699999999999999999999999999999999999887 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccccccCHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED--CADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+....+ ....++..+++.++++.+||.+ ..++.+ +.||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv 144 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRV 144 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHH
Confidence 2357999999999999999999999875442 2334555677899999999985 667765 46999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.+++|++++|++|++++.|++++
T Consensus 145 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 89999999997 57889999999999999999887543
No 75
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-42 Score=357.57 Aligned_cols=215 Identities=26% Similarity=0.352 Sum_probs=186.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccccc
Confidence 4889999998752 4699999999999999999999999999999999999887 48999999976421
Q ss_pred ---------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 78 ---------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 ---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++.+||+||+.+...... ....++..++++++++.+||.+..|+.++ .||
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 146 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPR-----RLS 146 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChh-----hCC
Confidence 13569999999999999999999987543111 22344556678899999999888777664 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.
T Consensus 147 ~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999988899999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 226 ~~~~~ 230 (250)
T PRK11264 226 GPAKA 230 (250)
T ss_pred CCHHH
Confidence 87543
No 76
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=350.50 Aligned_cols=218 Identities=29% Similarity=0.466 Sum_probs=194.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
|+.++|+..+. .-++++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++..
T Consensus 5 L~v~~l~k~FG------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 5 LEVRGLSKRFG------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeccceeecC------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHH
Confidence 56788888765 367999999999999999999999999999999999999984 899999998753
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccccc
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRL--------PS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 147 (661)
..+..++.-+|...+|+.|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|+..|+ |
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----L 150 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN-----L 150 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc-----C
Confidence 125678999999999999999999998865331 11 123566778899999999999999999986 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|+||||||.|||||+++|++|+||||.+||.+..+.++.+.|++++++ |.||+++.||. +.+..+||||++|+.|+++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcCc
Confidence 999999999999999999999999999999999999999999999985 79999999996 6899999999999999999
Q ss_pred EecCCCChh
Q 045930 227 YFGEAKSAP 235 (661)
Q Consensus 227 ~~G~~~~~~ 235 (661)
+.|+++++.
T Consensus 230 AeG~P~eV~ 238 (250)
T COG0411 230 AEGTPEEVR 238 (250)
T ss_pred ccCCHHHHh
Confidence 999987654
No 77
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=362.72 Aligned_cols=217 Identities=26% Similarity=0.413 Sum_probs=188.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. +..+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKE---DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCC---CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHH
Confidence 4789999998853 11245999999999999999999999999999999999999874 8999999987531
Q ss_pred -ccCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++ ..++.+||+||+.+..... +.+.++..++++++++.+||++..|+.++ .||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qrv 149 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPA-----RLSGGQKQRV 149 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHH
Confidence 235799999997 4677889999999875432 34566667789999999999988888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. ++ ..||++++|++|+++..|++++.
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999875 999999999974 56 57999999999999999987654
No 78
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.6e-43 Score=357.98 Aligned_cols=217 Identities=29% Similarity=0.396 Sum_probs=183.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~~-----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecCC-----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEEECCEEhhhCCHHH
Confidence 678999987741 25699999999999999999999999999999999999987 48999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRL--P---SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++.+||+||+.+...... . .....++.+++++++++.+||.+..++.+. .|||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 148 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD-----QLSG 148 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCH
Confidence 13569999999999999999999987532100 0 011123345678899999999888887764 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999765 89999999997 578899999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 228 ~~~~~ 232 (243)
T TIGR02315 228 GAPSE 232 (243)
T ss_pred CCHHH
Confidence 87654
No 79
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=9.9e-43 Score=374.60 Aligned_cols=203 Identities=23% Similarity=0.349 Sum_probs=183.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---------ccCeEEEEecCCC
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---------DYGGVAYVTQENI 90 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---------~~~~i~yv~Q~~~ 90 (661)
.+.+|+|+||++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... .++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 35699999999999999999999999999999999999988 49999999987531 1467999999999
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEE
Q 045930 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFL 170 (661)
Q Consensus 91 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllL 170 (661)
++|.+||+||+.+..... +.++++..+++.++++.+||++..+++++ .|||||||||+|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999987643 34566777889999999999988888875 5999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||||+|||+.++..+.+.|+++.++ |+|||++||++ .++.++||+|++|++|+++..|++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999765 89999999996 578999999999999999999987654
No 80
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-42 Score=356.07 Aligned_cols=212 Identities=27% Similarity=0.391 Sum_probs=185.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++.......+
T Consensus 2 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADYGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY---QHGSITLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEeCC------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCCcE
Confidence 789999988742 5699999999999999999999999999999999999887 4899999998754333468
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.++ .||||||||++||++|+
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrl~laral~ 144 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQRQRVGIARALA 144 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHh
Confidence 99999999999999999998865432 23345556778999999999888887764 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecCCC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLS--GGETVYFGEAK 232 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~--~G~~v~~G~~~ 232 (661)
.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ .++..+||++++|+ +|+++..++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999965 589999999997 57889999999998 59999888754
No 81
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=364.19 Aligned_cols=220 Identities=24% Similarity=0.365 Sum_probs=188.3
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++.. ....+.+|+|||+++++||+++|+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~y~~~-~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 1 MTIRFDNVSYTYQKG-TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTK 76 (286)
T ss_pred CEEEEEEEEEEECCC-CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 679999999998531 111256999999999999999999999999999999999999874 8999999986421
Q ss_pred ------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 78 ------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
.++.+||++|++ .+++ .||.||+.+..... ..+.++..++++++++.+||. +..++.+. .||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPF-----QMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc-----cCC
Confidence 245799999986 4555 59999999875432 345566677899999999997 67777664 699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 89999999996 57889999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|++++.
T Consensus 227 ~g~~~~~ 233 (286)
T PRK13646 227 QTSPKEL 233 (286)
T ss_pred ECCHHHH
Confidence 9987653
No 82
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=355.96 Aligned_cols=215 Identities=23% Similarity=0.467 Sum_probs=187.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYK------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR---DAGNIIIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeC------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCHH
Confidence 588999998874 25699999999999999999999999999999999999887 48999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||.||+.+....+ ...+.++.+++++++++.+|+.+..++.++ .||||||||+
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 146 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMGQ-----SLSGGERRRV 146 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcchh-----hCCHHHHHHH
Confidence 2356999999999999999999998765332 122344556778999999999887777664 6999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 223 (241)
T PRK10895 147 EIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTE 223 (241)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHH
Confidence 999999999999999999999999999999999999987899999999997 57889999999999999999887654
No 83
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=367.37 Aligned_cols=231 Identities=22% Similarity=0.337 Sum_probs=191.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++.. ....+.+|+|||+++++||++||+||||||||||+++|+|++++. +|+|.++|.+..
T Consensus 21 ~l~~~nl~~~y~~~-~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 21 ILRVKNLYCVFDEK-QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNN 96 (320)
T ss_pred eEEEEeEEEEeCCC-CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccccc
Confidence 47899999988531 111246999999999999999999999999999999999999874 899999997532
Q ss_pred ----------------cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 045930 77 ----------------LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADR 137 (661)
Q Consensus 77 ----------------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~ 137 (661)
..++.++||+|++ .+++ .||+||+.+..... ..+.++..++++++++.+||. +..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 1145799999986 4665 49999998875422 234566667889999999996 56776
Q ss_pred cccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 138 ~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
.+ ..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++
T Consensus 173 ~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri 246 (320)
T PRK13631 173 SP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEV 246 (320)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEE
Confidence 65 46999999999999999999999999999999999999999999999987899999999996 4688999999
Q ss_pred EEEeCCeEEEecCCCChh---HHHHhcCCCCC
Q 045930 218 FLLSGGETVYFGEAKSAP---TFFAEAGFPCP 246 (661)
Q Consensus 218 ~lL~~G~~v~~G~~~~~~---~~f~~~g~~~~ 246 (661)
++|++|++++.|++++.. +.+...|...|
T Consensus 247 ~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999876542 23444555544
No 84
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.7e-42 Score=360.63 Aligned_cols=215 Identities=23% Similarity=0.405 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 7 LVDMRGVSFTRG------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP---DHGEILFDGENIPAMSRS 77 (269)
T ss_pred eEEEeCeEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccChh
Confidence 478999998774 25699999999999999999999999999999999999987 48999999986421
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++|++|++.+++.+||.||+.+...... ....++.++++.++++.+||.+..++.++ .|||||||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~q 150 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPS-----ELSGGMAR 150 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHH
Confidence 13569999999999999999999988643211 12344455678889999999988888775 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++
T Consensus 151 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (269)
T PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQ 229 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 89999999996 5788999999999999999998865
Q ss_pred C
Q 045930 233 S 233 (661)
Q Consensus 233 ~ 233 (661)
+
T Consensus 230 ~ 230 (269)
T PRK11831 230 A 230 (269)
T ss_pred H
Confidence 4
No 85
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.3e-42 Score=378.19 Aligned_cols=218 Identities=26% Similarity=0.428 Sum_probs=190.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++.+|+|+||++++||+++|+||||||||||||+|+|++++ .+|+|.++|++...
T Consensus 3 ~L~~~nls~~y~------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p---~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFG------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP---TAGTVLVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEEC------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEEcCcCCHH
Confidence 578999999875 25799999999999999999999999999999999999987 48999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.+|||+|++.+++.+||+||+.+........ ....++.+++++++++.+||.+..|+.+. +||||||||+
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~-----~LSgGerQRv 148 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT-----SLSGGERQRV 148 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHH
Confidence 2467999999999999999999998864321100 11123445678999999999999988775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
.|||+|+++|++|||||||+|||+.++.++++.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999988899999999996 588999999999999999999998764
No 86
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=362.87 Aligned_cols=220 Identities=24% Similarity=0.353 Sum_probs=188.0
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++.. ....+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++...
T Consensus 1 ~~i~~~~l~~~~~~~-~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 1 MSIKFENVDYIYSPG-TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETG 76 (287)
T ss_pred CEEEEEEEEEEcCCC-CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 568999999988521 111256999999999999999999999999999999999999884 8999999986421
Q ss_pred ------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 78 ------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++ .++ .+||.||+.+..... ....++..++++++++.+||. +..++.++ .||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF-----ELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc-----cCC
Confidence 135699999996 344 579999998865432 234566667899999999997 67788775 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987799999999996 578899999999999999999
Q ss_pred cCCCCh
Q 045930 229 GEAKSA 234 (661)
Q Consensus 229 G~~~~~ 234 (661)
|++++.
T Consensus 227 g~~~~~ 232 (287)
T PRK13641 227 ASPKEI 232 (287)
T ss_pred CCHHHH
Confidence 986653
No 87
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-42 Score=347.95 Aligned_cols=207 Identities=29% Similarity=0.502 Sum_probs=180.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
++++|+++.++. +.+|+|+|+++++| +++|+||||||||||+++|+|++++ .+|+|.++|.+... .
T Consensus 1 i~~~~~~~~~~~------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP---SSGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCCccccchHHH
Confidence 468899988742 46999999999999 9999999999999999999999887 48999999976431 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.++ .||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la 142 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIA 142 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999876543 22344456678999999999988888764 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|++++.|
T Consensus 143 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 59999999997 5688899999999999998765
No 88
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.2e-42 Score=348.43 Aligned_cols=207 Identities=25% Similarity=0.380 Sum_probs=181.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccCChhH
Confidence 788999998731 25699999999999999999999999999999999999987 48999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.++ .||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 145 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPI-----QLSGGEQQR 145 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCch-----hCCHHHHHH
Confidence 2357999999998889999999999875432 23445556678899999999887787764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ +++..++|++++|++|+++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999999999999987789999999997 5788899999999999975
No 89
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-42 Score=359.90 Aligned_cols=220 Identities=25% Similarity=0.312 Sum_probs=186.2
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.|+++|+++.++.. ....+++|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++...
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 1 MGINLQNVSYTYQAG-TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSVRVDDTLITSTSK 76 (280)
T ss_pred CeEEEEEEEEEcCCC-CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccccc
Confidence 679999999988531 11124699999999999999999999999999999999999887 48999999986421
Q ss_pred ------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 78 ------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++ .+++ .||+||+.+..... ..+.++.+++++++++.+||. +..++.++ .||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPF-----ELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc-----cCC
Confidence 135699999996 4554 69999998865432 234455566788999999997 45677664 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987799999999997 578899999999999999999
Q ss_pred cCCCCh
Q 045930 229 GEAKSA 234 (661)
Q Consensus 229 G~~~~~ 234 (661)
|++++.
T Consensus 227 g~~~~~ 232 (280)
T PRK13649 227 GKPKDI 232 (280)
T ss_pred CCHHHH
Confidence 987654
No 90
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.5e-42 Score=351.42 Aligned_cols=212 Identities=29% Similarity=0.473 Sum_probs=183.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYG------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhh
Confidence 67899998874 256999999999999999999999999999999999999874 8999999986421 1
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
.+.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+||++..++.++ .||||||||++||
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la 144 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIA 144 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHH
Confidence 247999999998889999999998865442 23344455678899999999988888775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. .+|++++|++|++++.|++++
T Consensus 145 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 145 RALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999999999985 5899999999974 565 499999999999999887543
No 91
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=356.30 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=182.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.+.. +.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+....++.
T Consensus 12 ~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 12 PLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP---SAGELLAGTAPLAEARED 82 (257)
T ss_pred cEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEHHHhhCc
Confidence 4789999998742 5699999999999999999999999999999999999987 489999999875434567
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|++.+++.+||+||+.+... . ..+++++++++.+||.+..++.++ .||||||||++||++|
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqrl~laraL 148 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPA-----ALSGGQKQRVALARAL 148 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHH
Confidence 9999999999999999999987521 0 124568899999999988887764 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+.+
T Consensus 149 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 149 IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999966 489999999997 4788899999999999999988754
No 92
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.4e-42 Score=346.89 Aligned_cols=209 Identities=25% Similarity=0.402 Sum_probs=178.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. ....+++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|++...
T Consensus 2 l~~~~v~~~~~~--~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQE--GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP---TSGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccC--CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhhhcCHhH
Confidence 678999998753 11125699999999999999999999999999999999999887 48999999986421
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.++ .|||||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 148 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPS-----ELSGGERQ 148 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHH
Confidence 1256999999999999999999999865432 12334445678899999999888888764 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++ +.+|++++|++|+++
T Consensus 149 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999999999875 899999999974 55 458999999999975
No 93
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.5e-42 Score=353.79 Aligned_cols=215 Identities=27% Similarity=0.399 Sum_probs=183.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc---
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~--- 77 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEECC------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 688999998742 45999999999999999999999999999999999998752 1128999999986431
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccCH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++ +||+||+.+....+. ..+.++..++++++++.+||. +..++.++ .|||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSg 147 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSAL-----GLSG 147 (247)
T ss_pred chHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc-----cCCH
Confidence 1457999999998888 999999998765431 123455567789999999997 66666654 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +|||+++|++ .++.+++|++++|++|++++.|
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 148 GQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999999874 8999999997 5788999999999999999998
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
++++
T Consensus 226 ~~~~ 229 (247)
T TIGR00972 226 PTEQ 229 (247)
T ss_pred CHHH
Confidence 7653
No 94
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-43 Score=345.11 Aligned_cols=221 Identities=26% Similarity=0.447 Sum_probs=205.5
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-cc
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DY 79 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~ 79 (661)
|.|++++++.++. ++.+++|+||.++||||.+++|||||||||.+++|.|++++ .+|+|.++|.+.+. .+
T Consensus 1 ~~L~ie~vtK~Fg------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~---~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 1 MALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP---TEGEITWNGGPLSQEIK 71 (300)
T ss_pred CceEEecchhccC------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc---cCceEEEcCcchhhhhh
Confidence 5789999998775 37799999999999999999999999999999999999998 49999999998653 46
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
.+|||.|.+..|++.+||.|.|.|.|.++ ++++++.+++++.+|+.+++......++. +||.|++|++.+..
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHHHHHHH
Confidence 78999999999999999999999999986 78899999999999999999998888874 69999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHH
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFA 239 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~ 239 (661)
+++++|++++||||+|||||.+.+.+-+.+.+++++|.|||+|+|.. +.+.++||++++|++|+.|.+|+.+++..-|.
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999996 68999999999999999999999888776543
No 95
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=340.96 Aligned_cols=215 Identities=27% Similarity=0.431 Sum_probs=187.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+.+||+..|.. .++|+|||+++++||+++|+|||||||||||++|+|..++. +|+|.++|++...
T Consensus 3 mL~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHH
Confidence 5789999987752 67999999999999999999999999999999999999873 8999999998532
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.+..++||||...+||.|||+|||..++..+.. ++..+..++++.+.+ .|.+.++++.|+ |||||||.
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQM 144 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGT-----LSGGEQQM 144 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccC-----CChHHHHH
Confidence 256799999999999999999999988654311 122222377888888 578889998885 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++.++. ....+++||.++|.+|+++++|+.++
T Consensus 145 LAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~e 223 (237)
T COG0410 145 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAE 223 (237)
T ss_pred HHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999976 78999998884 67899999999999999999999765
Q ss_pred hh
Q 045930 234 AP 235 (661)
Q Consensus 234 ~~ 235 (661)
..
T Consensus 224 L~ 225 (237)
T COG0410 224 LL 225 (237)
T ss_pred Hh
Confidence 43
No 96
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.2e-42 Score=366.90 Aligned_cols=223 Identities=25% Similarity=0.358 Sum_probs=190.5
Q ss_pred eEEEEEEEEEeecCCc-------ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee
Q 045930 2 YLVWEEVTVVVPNFGS-------GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~-------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~ 74 (661)
.|+++||++.++.... +....+++|||+++++||+++|+|+||||||||+++|+|++++ .+|+|.++|++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~~~G~~ 84 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWLGKD 84 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEEECCEE
Confidence 4789999999863111 1125699999999999999999999999999999999999987 38999999987
Q ss_pred ccc--------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 045930 75 RRL--------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWH 143 (661)
Q Consensus 75 ~~~--------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~ 143 (661)
... .++.++||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||. +..++.+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p---- 159 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYP---- 159 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCc----
Confidence 421 245799999997 688999999999987653211 245667778899999999994 4667766
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
++|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.++ |.|||++|||+ ..+.+++|+|++|.+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~ 237 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYL 237 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999875 99999999996 578889999999999
Q ss_pred CeEEEecCCCCh
Q 045930 223 GETVYFGEAKSA 234 (661)
Q Consensus 223 G~~v~~G~~~~~ 234 (661)
|++++.|+.++.
T Consensus 238 G~ive~g~~~~i 249 (331)
T PRK15079 238 GHAVELGTYDEV 249 (331)
T ss_pred CEEEEEcCHHHH
Confidence 999999986543
No 97
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3e-42 Score=346.09 Aligned_cols=206 Identities=26% Similarity=0.396 Sum_probs=179.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEECC------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCccchhH
Confidence 468899998752 4699999999999999999999999999999999999887 48999999986521
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+..... .....++.+++++++++.+|+.+..++.+. .||||||||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 144 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYPA-----QLSGGQQQRV 144 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCcc-----ccCHHHHHHH
Confidence 2457999999999999999999998864311 123344556678999999999888888764 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++
T Consensus 145 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999988899999999997 578899999999999974
No 98
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-42 Score=359.42 Aligned_cols=228 Identities=27% Similarity=0.424 Sum_probs=192.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+..
T Consensus 5 ~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p---~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CccEEEECCEECCCCcch
Confidence 4789999998842 25699999999999999999999999999999999999987 4899999998752
Q ss_pred --cccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 --LDYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
..++.++|++|++. .+...||+||+.+..... +.+.++.+++++++++.+||.+..|+.++ .|||||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~q 148 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKK 148 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcc-----cCCHHHHH
Confidence 12357999999973 334579999998865432 23455666789999999999988888775 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPK 227 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 89999999996 5688899999999999999999987
Q ss_pred ChhH---HHHhcCCCCC
Q 045930 233 SAPT---FFAEAGFPCP 246 (661)
Q Consensus 233 ~~~~---~f~~~g~~~~ 246 (661)
+... .+...+.++|
T Consensus 228 ~~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 228 EVFAEKEMLRKVNLRLP 244 (283)
T ss_pred HHhcCHHHHHHcCCCCC
Confidence 6432 3334455443
No 99
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-42 Score=360.55 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=177.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---------ccCeEEEEecCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---------DYGGVAYVTQENIM 91 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---------~~~~i~yv~Q~~~l 91 (661)
+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++... .++.++|++|++.+
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 56899999999999999999999999999999999999874 8999999986421 12569999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEe
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLD 171 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLD 171 (661)
++.+||+||+.+....+ .....+..++++++++.+||.+..++.++ .||||||||++||+||+.+|++||||
T Consensus 114 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 114 LPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred CCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999875432 22344455678999999999988888875 59999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 172 EPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 172 EPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 247 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEE 247 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999765 89999999996 57889999999999999999987653
No 100
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-42 Score=352.18 Aligned_cols=213 Identities=23% Similarity=0.381 Sum_probs=183.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYG------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeC------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEecCCCCHH
Confidence 478999999874 25699999999999999999999999999999999999987 48999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||.||+.+..... ..++.++.++++++.+ ++.+..++.+ +.||||||||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qr 145 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMSGGEQQM 145 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCCHHHHHH
Confidence 2356999999999999999999998864321 1233345677788888 5777666655 4699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 146 l~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999988899999999996 578999999999999999999986543
No 101
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.9e-42 Score=345.73 Aligned_cols=201 Identities=30% Similarity=0.429 Sum_probs=173.2
Q ss_pred EEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cccCeE
Q 045930 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYGGV 82 (661)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~~~i 82 (661)
++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+.. ..++.+
T Consensus 2 ~~~l~~~~~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKK-----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE---SSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCC-----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEhhhHHhhcce
Confidence 5788887642 15699999999999999999999999999999999999887 4899999998742 224579
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 83 AYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 83 ~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
+|++|++. .+..+||+||+.+..... . . .+++++++++.+||.+..++.++ +||||||||++||++|
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral 141 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAAL 141 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHH
Confidence 99999974 344679999998765321 1 1 12568899999999988888775 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999987899999999997 5788899999999999875
No 102
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6e-42 Score=354.09 Aligned_cols=214 Identities=23% Similarity=0.366 Sum_probs=185.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 5 KLNVIDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIVVNGQTINLVRDK 75 (257)
T ss_pred cEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEccccccc
Confidence 4789999998752 5699999999999999999999999999999999999887 4899999997642
Q ss_pred -------------cccCeEEEEecCCCCCCCCCHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccC
Q 045930 77 -------------LDYGGVAYVTQENIMLGTLTVRETIAYSAH-LRLPSNMNNEEITDVIEEAITEMGLEDCA-DRLIGN 141 (661)
Q Consensus 77 -------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~ 141 (661)
..++.++|++|++.+++.+||+||+.+... .. .....+.++++.++++.+||.+.. ++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-- 150 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQGKYP-- 150 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhhhCCc--
Confidence 113579999999999999999999987542 21 223455567789999999998753 6655
Q ss_pred ccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 142 ~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|+
T Consensus 151 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~ 226 (257)
T PRK10619 151 ---VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLH 226 (257)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEE
Confidence 46999999999999999999999999999999999999999999999987899999999997 57888999999999
Q ss_pred CCeEEEecCCCC
Q 045930 222 GGETVYFGEAKS 233 (661)
Q Consensus 222 ~G~~v~~G~~~~ 233 (661)
+|++++.|+.++
T Consensus 227 ~G~i~~~~~~~~ 238 (257)
T PRK10619 227 QGKIEEEGAPEQ 238 (257)
T ss_pred CCEEEEeCCHHH
Confidence 999999987653
No 103
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-42 Score=355.47 Aligned_cols=225 Identities=26% Similarity=0.387 Sum_probs=193.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCceeeEEEECCeec-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS-G-NVVMTGNVLLNGKKR----- 75 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~-~~~~~G~i~~~g~~~----- 75 (661)
|+.+||++.+.... ...++++||||++++||++||+|.|||||||+.++|.|+++ + ....+|+|.++|++.
T Consensus 2 L~v~nL~v~f~~~~--g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDA--GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCC--ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 68999999997622 24679999999999999999999999999999999999997 4 345679999999852
Q ss_pred ----ccccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 76 ----RLDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNM-NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 76 ----~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
+.+.+.|+||+|++ .|.|.+||.+.+.-..+.+. .. +++|.++++.++|+.+||.+..... +.++.+||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~--~~YPhelS 155 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRL--KSYPHELS 155 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHH--hhCCcccC
Confidence 12346799999996 68999999999988876542 23 4667788999999999998643221 22456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|++|||. ..+.++||||.||..|++|+
T Consensus 156 GGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 156 GGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred CcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEE
Confidence 9999999999999999999999999999999999999999999987 499999999996 58999999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|++++.
T Consensus 235 ~g~~~~i 241 (316)
T COG0444 235 EGPVEEI 241 (316)
T ss_pred eCCHHHH
Confidence 9998653
No 104
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-42 Score=356.77 Aligned_cols=214 Identities=28% Similarity=0.393 Sum_probs=184.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRYQ------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEcC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCH
Confidence 78999999874 246999999999999999999999999999999999999874 8999999987421
Q ss_pred --ccCeEEEEecCCCC-CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIM-LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l-~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.. +...|+.||+.+..... ....++..++++++++.+||.+..++.++ .||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 144 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQ-----CLSHGQKKR 144 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCch-----hCCHHHHHH
Confidence 13569999999753 34568999998865432 23445556678899999999888888764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987799999999997 578899999999999999999987653
No 105
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-42 Score=357.42 Aligned_cols=215 Identities=26% Similarity=0.369 Sum_probs=187.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|++...
T Consensus 6 l~~~~l~~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 6 IRVEHISFRYPD----AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWD 78 (279)
T ss_pred EEEEEEEEEeCC----CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 889999998752 1356999999999999999999999999999999999999884 8999999987531
Q ss_pred ccCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 DYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 ~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++ .+++..||.||+.+..... ..+.++.+++++++++.+||.+..++.++ .||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~ 150 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVA 150 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHH
Confidence 235799999997 3677789999999875432 23455666789999999999988888775 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++. .||++++|++|++++.|+.++.
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEI 227 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999876 899999999974 565 5999999999999999987654
No 106
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.2e-42 Score=344.61 Aligned_cols=205 Identities=33% Similarity=0.485 Sum_probs=175.4
Q ss_pred EEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----c
Q 045930 4 VWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----D 78 (661)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~ 78 (661)
+++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+... .
T Consensus 1 ~~~~l~~~~~~----~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPD----GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCC----CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEcccCCHHHH
Confidence 36788887742 125699999999999999999999999999999999999887 48999999986431 2
Q ss_pred cCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 79 YGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 79 ~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
++.++|++|++. .++.+||+||+.+....+ .....+.+++++++++.+||.+..++.++ .||||||||++|
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~l 145 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPF-----TLSGGQKQRVAI 145 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHH
Confidence 357999999974 466789999998865432 22344455678899999999888888775 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999987799999999996 57888999999999885
No 107
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.2e-42 Score=347.24 Aligned_cols=209 Identities=30% Similarity=0.476 Sum_probs=175.2
Q ss_pred EEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEE
Q 045930 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAY 84 (661)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~y 84 (661)
++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++....++.++|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEE
Confidence 5788887742 46999999999999999999999999999999999998874 89999999865333467999
Q ss_pred EecCCCCC--CCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 85 VTQENIML--GTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 85 v~Q~~~l~--~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++.+. ..+||+||+.+....... .....++.+++++++++.+||.+..++.++ .||||||||++||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al 147 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVLLARAL 147 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHH
Confidence 99998763 347999999886432110 001123345678999999999888888765 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999987899999999996 5788999999999886 56654
No 108
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=7.3e-42 Score=346.69 Aligned_cols=214 Identities=27% Similarity=0.411 Sum_probs=177.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ......+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++|++...
T Consensus 2 l~~~~v~~~~~~--~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPT--GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccC--CCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccchhh
Confidence 678999998753 11113699999999999999999999999999999999999887 48999999986421
Q ss_pred ---ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCccccccCHH
Q 045930 78 ---DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDV-IEEAITEMGLE-DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ---~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++ .+++.+||+||+.+......+ ...++..+. ++++++.+++. +..++.++ .||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G 149 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPH-----ELSGG 149 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCch-----hcCHH
Confidence 235799999998 467789999999887543211 112222222 36889999995 56777664 59999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999999999876 89999999997 5788899999999999998654
No 109
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.3e-42 Score=350.61 Aligned_cols=216 Identities=28% Similarity=0.450 Sum_probs=185.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHH
Confidence 3789999988742 46999999999999999999999999999999999998874 8999999986431
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP--S---NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+.+..++.++ .||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 147 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG-----LLSHG 147 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 134699999999999999999999986432100 0 01223445678999999999988888775 59999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.|+
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCC
Confidence 99999999999999999999999999999999999999999976 79999999996 57889999999999999999887
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
.++
T Consensus 226 ~~~ 228 (242)
T TIGR03411 226 LDQ 228 (242)
T ss_pred HHH
Confidence 543
No 110
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7.2e-42 Score=350.18 Aligned_cols=217 Identities=26% Similarity=0.372 Sum_probs=182.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeeccc---
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~~--- 77 (661)
|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSVE------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEEC------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCH
Confidence 47899999874 256999999999999999999999999999999999995 44 48999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS----NMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~----~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSg 149 (661)
.+..++|++|++.+++.+||+|++.+........ ..+.++..++++++++.+||. +..++.++ .+|||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~ 147 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSG 147 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCH
Confidence 1234899999999999999999998865432110 112334456789999999997 46676653 14999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~~ 228 (661)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987899999999997 467777 899999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 227 g~~~~ 231 (243)
T TIGR01978 227 GDVEL 231 (243)
T ss_pred cCHHH
Confidence 98753
No 111
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-42 Score=353.22 Aligned_cols=215 Identities=30% Similarity=0.428 Sum_probs=185.5
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
+.++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 1 AMLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWSP 71 (258)
T ss_pred CeEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcccCCH
Confidence 35889999998752 5699999999999999999999999999999999999887 48999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.++ .||||||||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHH
Confidence 2356999999998888899999998864321 12233345678899999999988888775 5999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 156 SIALEIL------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 156 sIa~aL~------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
+||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++ .++.++||++++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999998 5689999999996 578889999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 223 ~~~~~ 227 (258)
T PRK13548 223 GTPAE 227 (258)
T ss_pred CCHHH
Confidence 87654
No 112
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-42 Score=353.03 Aligned_cols=217 Identities=23% Similarity=0.383 Sum_probs=185.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFG------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTILLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEEC------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEEECCEECCCCCHH
Confidence 378999999874 25699999999999999999999999999999999999887 48999999987431
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-----------C-CCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-----------S-NMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-----------~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 143 (661)
.+..++|++|++.+++.+||+||+.+....... . .....+..++++++++.+||.+..++.++
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 152 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAG--- 152 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChh---
Confidence 134589999999999999999999986432110 0 00112334568889999999888888775
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++
T Consensus 153 --~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 153 --NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999999876 89999999996 578899999999999
Q ss_pred CeEEEecCCCC
Q 045930 223 GETVYFGEAKS 233 (661)
Q Consensus 223 G~~v~~G~~~~ 233 (661)
|++++.|++++
T Consensus 230 g~i~~~~~~~~ 240 (255)
T PRK11300 230 GTPLANGTPEE 240 (255)
T ss_pred CeEEecCCHHH
Confidence 99999887654
No 113
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.1e-42 Score=352.10 Aligned_cols=213 Identities=25% Similarity=0.341 Sum_probs=184.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeCC------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccccccc
Confidence 478999998752 4699999999999999999999999999999999999887 48999999976421
Q ss_pred -------------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 045930 78 -------------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144 (661)
Q Consensus 78 -------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 144 (661)
.++.++|++|++.+++.+||.||+.+..... .....++.++.++++++.+|+.+..++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 145 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPA---- 145 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChh----
Confidence 1457999999999999999999998854211 123344556678999999999888887664
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.+++|++++|++|
T Consensus 146 -~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 146 -QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKG 223 (252)
T ss_pred -hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999875 89999999997 5788999999999999
Q ss_pred eEEEecCCC
Q 045930 224 ETVYFGEAK 232 (661)
Q Consensus 224 ~~v~~G~~~ 232 (661)
++++.|+.+
T Consensus 224 ~i~~~g~~~ 232 (252)
T TIGR03005 224 RIVEQGKPD 232 (252)
T ss_pred EEEEeCCHH
Confidence 999988754
No 114
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-42 Score=357.35 Aligned_cols=214 Identities=27% Similarity=0.360 Sum_probs=185.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|||+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEECCccccHH
Confidence 788999998742 24599999999999999999999999999999999999887 48999999987531
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. .+...||.||+.+..... ..+.++..++++++++.+||.+..++.++ .||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv 145 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSGGQGQCV 145 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCHHHHHHH
Confidence 1356999999975 366789999998875432 23455666778999999999988888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++ ..||++++|++|++++.|++++.
T Consensus 146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999878999999999974 56 56999999999999999987653
No 115
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-42 Score=353.40 Aligned_cols=218 Identities=28% Similarity=0.436 Sum_probs=186.3
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++...
T Consensus 1 ~~l~~~~l~~~~~------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 1 MTLRTENLTVGYG------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSS 71 (255)
T ss_pred CEEEEEeEEEEEC------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEEEECCEEhHHCCH
Confidence 5789999999874 25699999999999999999999999999999999999887 48999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|+..+++.+||.||+.+....... .....++..++++++++.+||.+..++.++ .||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT-----DLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc-----cCCHHHHHH
Confidence 235699999999888899999999875311000 011123345678899999999888888764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..|+.++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 224 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEE 224 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHH
Confidence 9999999999999999999999999999999999999987799999999997 57899999999999999999887654
No 116
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=354.04 Aligned_cols=215 Identities=32% Similarity=0.482 Sum_probs=185.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchH
Confidence 789999998742 246999999999999999999999999999999999999874 8999999987521
Q ss_pred --ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++. .+...||.||+.+..... ..+.++.++++.++++.+||++..++.++ .||||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~Gq~qr 145 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLSGGQKKR 145 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCCHHHHHH
Confidence 1356999999963 333579999998764321 23455566778999999999988888775 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987799999999996 578889999999999999999987764
No 117
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-41 Score=354.56 Aligned_cols=216 Identities=31% Similarity=0.446 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCHH
Confidence 4789999998742 24599999999999999999999999999999999999987 48999999986431
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. .+...||.||+.+..... ..+.++.+++++++++.+||.+..++.++ .||||||||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrl 146 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSGGEKKRV 146 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHH
Confidence 2356999999973 344679999998765432 24455566788999999999988888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+.||++++|++|++++.|++++.
T Consensus 147 ~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999876 89999999997 578899999999999999999987654
No 118
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-41 Score=361.90 Aligned_cols=223 Identities=22% Similarity=0.303 Sum_probs=188.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-ceeeEEEECCeeccc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV-VMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~i~~~g~~~~~--- 77 (661)
.|+++||++.++.. +....+|+||||++++||++||+|+||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 3 ~L~v~~l~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDE--SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCC--CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 58999999998641 112569999999999999999999999999999999999986421 248999999987421
Q ss_pred ------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCccccc
Q 045930 78 ------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED---CADRLIGNWHWRG 146 (661)
Q Consensus 78 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~~ 146 (661)
.++.++||+|++ .+.|.+||.+++........ ....++.++++.++++.+||.+ ..++.+ ++
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p-----~~ 153 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYP-----HQ 153 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCc-----hh
Confidence 124699999998 58899999999877654321 2345666788999999999975 345544 56
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||||||||+||+||+.+|++||+||||+|||+.++.++++.|++++++ |.|+|++|||. ..+.+++|+|++|++|++
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~i 232 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQV 232 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874 99999999996 578889999999999999
Q ss_pred EEecCCCCh
Q 045930 226 VYFGEAKSA 234 (661)
Q Consensus 226 v~~G~~~~~ 234 (661)
++.|++++.
T Consensus 233 ve~g~~~~~ 241 (326)
T PRK11022 233 VETGKAHDI 241 (326)
T ss_pred EEECCHHHH
Confidence 999987654
No 119
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=352.01 Aligned_cols=215 Identities=23% Similarity=0.362 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|++..
T Consensus 12 ~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 12 QIKVENLNLWYG------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eEEEeeeEEEeC------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 478899998764 2569999999999999999999999999999999999986410 14899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ +||+||+.+....+ +.+.++.+++++++++.+|+. +..++.+ +.||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 156 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA-----LSLS 156 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh-----hhCC
Confidence 12356999999998888 89999999875432 233445556788999999984 3455555 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.
T Consensus 157 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 79999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 235 ~~~~~ 239 (258)
T PRK14268 235 GQTRQ 239 (258)
T ss_pred CCHHH
Confidence 88653
No 120
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=356.57 Aligned_cols=220 Identities=24% Similarity=0.342 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++.......+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP---SEGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeccccccH
Confidence 47899999998632111235699999999999999999999999999999999999987 48999999987531
Q ss_pred --ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++. .+...||.|++.|..... ..+..+.+++++++++.+||++..++.++ .||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qr 152 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLSGGQKQR 152 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHH
Confidence 2457999999974 233469999999875432 23455666789999999999998888875 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. ||++++|++|++++.|++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999874 999999999974 5655 99999999999999998765
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
.
T Consensus 231 ~ 231 (280)
T PRK13633 231 I 231 (280)
T ss_pred H
Confidence 4
No 121
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.5e-41 Score=343.15 Aligned_cols=211 Identities=28% Similarity=0.385 Sum_probs=180.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~~~--~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 6 IVEVHHLKKSVGQG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG---SSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred eEEEeeeEEEccCC--CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEEECCEEcccCCHH
Confidence 47899999887531 1113599999999999999999999999999999999999887 48999999986421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
..+.++|++|++.+++.+||.||+.+....+ .....+.+++++++++.+||.+..++.++ .||||||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Ge~ 152 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPA-----QLSGGEQ 152 (228)
T ss_pred HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHH
Confidence 1246999999999999999999998865432 22344556788999999999988888775 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++ +.+|++++|++|++++
T Consensus 153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999765 899999999974 55 5599999999999874
No 122
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.9e-41 Score=361.99 Aligned_cols=226 Identities=24% Similarity=0.351 Sum_probs=189.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++.. +....+|+||||++++||+++|+|+||||||||+++|+|++++....+|+|.++|++...
T Consensus 12 ~L~i~~l~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 12 LLDVKDLRVTFSTP--DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred eEEEeCeEEEEecC--CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 47899999988641 123569999999999999999999999999999999999997632248999999987421
Q ss_pred -----ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHH
Q 045930 78 -----DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 -----~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgG 150 (661)
..+.++||+|++ .+.|.+||.+++.+...... ..+.++..+++.++++.+||.+..++ . +..+++||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG 165 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGG 165 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHH
Confidence 124799999998 68899999999987655431 24556667789999999999753322 1 1234679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||+||+||+.+|++||+||||+|||+.++..+++.|++++++ |.|+|++|||+ ..+.+++|++++|++|++++.|
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 99999999996 5788899999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
++++.
T Consensus 245 ~~~~i 249 (330)
T PRK09473 245 NARDV 249 (330)
T ss_pred CHHHH
Confidence 87654
No 123
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=369.68 Aligned_cols=220 Identities=25% Similarity=0.344 Sum_probs=189.7
Q ss_pred eEEEEEEEEEeecCCc------------------ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 045930 2 YLVWEEVTVVVPNFGS------------------GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV 63 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~------------------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~ 63 (661)
.++++|++..+..... .....+|+|+||++++||+++|+|||||||||||++|+|++++.
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~-- 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-- 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC--
Confidence 4788999887654210 01124899999999999999999999999999999999999874
Q ss_pred eeeEEEECCeeccc---------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 045930 64 MTGNVLLNGKKRRL---------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134 (661)
Q Consensus 64 ~~G~i~~~g~~~~~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 134 (661)
+|+|.++|++... .++.++|++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||++.
T Consensus 82 -sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~ 157 (400)
T PRK10070 82 -RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENY 157 (400)
T ss_pred -CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChh
Confidence 8999999987421 1247999999999999999999999986543 23455566788999999999988
Q ss_pred ccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhh
Q 045930 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 135 ~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~ 213 (661)
.++.+. .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++
T Consensus 158 ~~~~~~-----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~ 231 (400)
T PRK10070 158 AHSYPD-----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRI 231 (400)
T ss_pred hhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHh
Confidence 888775 5999999999999999999999999999999999999999999999976 489999999996 578899
Q ss_pred cCeEEEEeCCeEEEecCCCC
Q 045930 214 FDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 214 ~D~v~lL~~G~~v~~G~~~~ 233 (661)
+|++++|++|+++..|++++
T Consensus 232 ~Dri~vL~~G~i~~~g~~~~ 251 (400)
T PRK10070 232 GDRIAIMQNGEVVQVGTPDE 251 (400)
T ss_pred CCEEEEEECCEEEecCCHHH
Confidence 99999999999999998654
No 124
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=352.41 Aligned_cols=219 Identities=25% Similarity=0.423 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|.++|.+...
T Consensus 4 ~l~~~nl~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 4 IIRVEKLAKTFN------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred EEEEeeEEEEeC------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc
Confidence 478899998874 2569999999999999999999999999999999999987642236999999976421
Q ss_pred ------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccccc
Q 045930 78 ------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-----NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146 (661)
Q Consensus 78 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 146 (661)
.++.++|++|++.+++.+||.||+.+......+. ....++.+++++++++.+||.+..|+.++ .
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 152 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS-----T 152 (262)
T ss_pred chhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc-----c
Confidence 1346999999999999999999998764211000 01123445678999999999888888775 5
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHV 231 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999864 89999999997 568899999999999999
Q ss_pred EEecCCC
Q 045930 226 VYFGEAK 232 (661)
Q Consensus 226 v~~G~~~ 232 (661)
++.|+++
T Consensus 232 ~~~g~~~ 238 (262)
T PRK09984 232 FYDGSSQ 238 (262)
T ss_pred EEeCCHH
Confidence 9998764
No 125
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=360.62 Aligned_cols=222 Identities=22% Similarity=0.286 Sum_probs=189.8
Q ss_pred eEEEEEEEEEeecCCc----ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc
Q 045930 2 YLVWEEVTVVVPNFGS----GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~ 77 (661)
.|+.+||++.++.... +..+.+|+|||++|++||++||+|+||||||||+++|+|++++ .+|+|.++|++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP---TGGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEcCc
Confidence 4789999999863211 1125799999999999999999999999999999999999887 38999999987421
Q ss_pred --------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccc
Q 045930 78 --------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRG 146 (661)
Q Consensus 78 --------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~ 146 (661)
.++.++||+|++ .+.|.+||.+++........ ...+++.++++.++++.+||. +..++.+ ++
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-----~~ 154 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYP-----HM 154 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----cc
Confidence 245799999997 58899999999987655421 234566677899999999996 4667766 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||||||||+||+||+.+|++||+||||+|||..++.++++.|+++.++ |.|||++|||. ..+.+++|+|++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 99999999996 578889999999999999
Q ss_pred EEecCCCCh
Q 045930 226 VYFGEAKSA 234 (661)
Q Consensus 226 v~~G~~~~~ 234 (661)
++.|+.++.
T Consensus 234 ve~g~~~~~ 242 (327)
T PRK11308 234 VEKGTKEQI 242 (327)
T ss_pred EEECCHHHH
Confidence 999987654
No 126
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.1e-41 Score=342.62 Aligned_cols=208 Identities=27% Similarity=0.433 Sum_probs=182.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-ccCe
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DYGG 81 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~~~ 81 (661)
|+++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++|.+... ..+.
T Consensus 1 l~l~~v~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFG------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEEC------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccccc
Confidence 46889998774 25699999999999999999999999999999999999887 48999999986532 2357
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|++.+++.+||+||+.+....+ ... ++++.++++.+||++..|+.++ .||||||||++||+++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral 139 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRLGIAIAL 139 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHHHHHHHH
Confidence 999999999999999999998876432 111 2457889999999988888764 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+++
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 999999999999999999999999999999987799999999997 5788999999999999999999864
No 127
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.9e-41 Score=352.05 Aligned_cols=221 Identities=24% Similarity=0.335 Sum_probs=185.9
Q ss_pred eEEEEEEEEEeecCC---cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-
Q 045930 2 YLVWEEVTVVVPNFG---SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~---~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~- 77 (661)
.|+++|+++.++... .+.++.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcccc
Confidence 478999999885210 01135799999999999999999999999999999999999987 48999999986421
Q ss_pred -------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccccc
Q 045930 78 -------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGI 147 (661)
Q Consensus 78 -------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 147 (661)
.++.++|++|++ .+++.+||+||+.+..... .....++.+++++++++.+||. +..++.++ +|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPR-----QL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChh-----hC
Confidence 135699999996 4677899999998765321 1223344556789999999996 66777664 59
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ ..+.+++|++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999875 89999999996 5788899999999999999
Q ss_pred EecCCCC
Q 045930 227 YFGEAKS 233 (661)
Q Consensus 227 ~~G~~~~ 233 (661)
+.|++++
T Consensus 231 ~~g~~~~ 237 (265)
T TIGR02769 231 EECDVAQ 237 (265)
T ss_pred EECCHHH
Confidence 9998654
No 128
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-41 Score=340.30 Aligned_cols=207 Identities=29% Similarity=0.430 Sum_probs=177.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +. .|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... .+
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP---QSGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCcCCHhH
Confidence 468899988742 22 399999999999999999999999999999999987 48999999987531 23
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+....+. .. .++.+++++++++.+||.+..++.+. +||||||||++||+
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~ 141 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALAR 141 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHH
Confidence 579999999999999999999987643211 11 22345678999999999988888764 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999864 89999999996 5788999999999999998654
No 129
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=349.08 Aligned_cols=218 Identities=25% Similarity=0.346 Sum_probs=183.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++. ...+|+|.++|++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 4 AIETVNLRVYYGS------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred eEEEEeEEEEeCC------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 4789999998742 46999999999999999999999999999999999998752 124899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++.+||.||+.+....+. .....++..++++++++.+||.+ ..++.+ +.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 151 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYP-----SNLS 151 (253)
T ss_pred cChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccCh-----hhCC
Confidence 123579999999999999999999998754321 01133445567889999999853 344444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++..+||++++|++|++++.
T Consensus 152 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 69999999997 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 230 ~~~~~ 234 (253)
T PRK14267 230 GPTRK 234 (253)
T ss_pred CCHHH
Confidence 88653
No 130
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=348.05 Aligned_cols=218 Identities=26% Similarity=0.343 Sum_probs=183.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.+..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 5789999998742 46999999999999999999999999999999999998631 124899999998642
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccCHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGISGG 150 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSgG 150 (661)
..++.++|++|++.+++.+||+||+.+....+.. ....++.++.++++++.+||.+ ..|+.+ .+||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG 150 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA-----GKLSGG 150 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc-----ccCCHH
Confidence 1245799999999889999999999987543211 1133455677899999999864 345554 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14247 151 QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGP 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECC
Confidence 99999999999999999999999999999999999999999965 89999999997 47889999999999999999988
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 229 ~~~ 231 (250)
T PRK14247 229 TRE 231 (250)
T ss_pred HHH
Confidence 654
No 131
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.6e-41 Score=366.81 Aligned_cols=202 Identities=27% Similarity=0.370 Sum_probs=180.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee----cc-c--------ccCeEEEEec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK----RR-L--------DYGGVAYVTQ 87 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~----~~-~--------~~~~i~yv~Q 87 (661)
..+|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|.++|++ .. . .++.++|++|
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p---~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV---SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 5689999999999999999999999999999999999987 48999999962 11 0 1257999999
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCE
Q 045930 88 ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167 (661)
Q Consensus 88 ~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~l 167 (661)
++.+++.+||+||+.+....+ +.++++.+++++++++.+||++..|+.++ +||||||||++|||+|+.+|++
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999986543 24456667789999999999998888875 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||||||+|||+.++..+.+.|++++++ |+|||++|||+ +++.+++|++++|++|+++..|++++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei 252 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEI 252 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999875 99999999996 578999999999999999999987654
No 132
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-41 Score=350.29 Aligned_cols=216 Identities=22% Similarity=0.305 Sum_probs=185.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 7 ~l~i~~l~~~~~~----~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQYQS----DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIFYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEcCC----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCHH
Confidence 4789999998752 124599999999999999999999999999999999999987 48999999987521
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. +++..||.+|+.+..... ....++..++++++++.+|+.+..|+.++ .||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl 151 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPN-----ALSGGQKQRV 151 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHH
Confidence 2457999999974 677889999998875432 23345556678899999999988887764 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. +|++++|++|++++.|++++.
T Consensus 152 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 899999999974 5655 999999999999999987654
No 133
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=349.05 Aligned_cols=216 Identities=23% Similarity=0.312 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|++..
T Consensus 7 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 7 IIETENLNLFYTD------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred eEEEeeeEEEeCC------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 4789999998742 469999999999999999999999999999999999987520 13899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ +||+||+.+....+. .....+.+++++++++.+++. +..++.+ +.||
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 152 (254)
T PRK14273 81 FDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA-----LSLS 152 (254)
T ss_pred ccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc-----ccCC
Confidence 12457999999988875 899999998754321 123344567788999999873 4456655 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++ +++.+++|++++|++|+++..
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 79999999997 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 231 g~~~~ 235 (254)
T PRK14273 231 SSTDE 235 (254)
T ss_pred CCHHH
Confidence 88654
No 134
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-41 Score=345.54 Aligned_cols=211 Identities=26% Similarity=0.405 Sum_probs=180.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIRLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCCHHH
Confidence 468999998752 4699999999999999999999999999999999999987 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG-LEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+....+ ... .++.++++++.++ +.+..++.++ .||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv 140 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGG-----DLSGGQQQQL 140 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChh-----hCCHHHHHHH
Confidence 1356999999999999999999998875432 111 1234577777776 5666777664 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 141 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 141 AIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999999999999999875 89999999996 578889999999999999999986543
No 135
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-41 Score=352.48 Aligned_cols=219 Identities=24% Similarity=0.366 Sum_probs=187.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|.++|++...
T Consensus 5 ~l~i~~l~~~~~~----~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 5 IVEFKHVSFTYPD----SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred eEEEEEEEEEcCC----CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 4789999998752 12469999999999999999999999999999999999997741123999999987531
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.+||++|++. .++..||+||+.+....+ ..+.++.+++++++++.+||.+..++.+. .||||||||+
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~G~~qrv 152 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPA-----NLSGGQKQRV 152 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHH
Confidence 2357999999974 677889999998865432 34566667789999999999988888774 6999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++ ..||++++|++|++++.|++++.
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 899999999974 55 57999999999999999987654
No 136
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.4e-41 Score=344.47 Aligned_cols=213 Identities=27% Similarity=0.430 Sum_probs=186.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+... .+
T Consensus 1 i~i~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGS------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEECC------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCChhh
Confidence 468999988752 4699999999999999999999999999999999999887 48999999987532 24
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+|+.||+.+....+ .....+..+.++++++.+++.+..|+.++ .|||||+||++||+
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~lar 143 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQRVALAR 143 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHHHHHH
Confidence 57999999999999999999998875432 12334445678999999999888888765 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+.++
T Consensus 144 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 144 ALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDE 217 (237)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999876 89999999997 57889999999999999999988654
No 137
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.7e-41 Score=349.10 Aligned_cols=216 Identities=31% Similarity=0.452 Sum_probs=184.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEEcccCCHHH
Confidence 688999998742 5699999999999999999999999999999999999887 48999999986431
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAH-LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++.+++.+||+||+.+... .+.......++..++++++++.+|+.+..++.++ .||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~ 147 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGGERQRVH 147 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHH
Confidence 13469999999888888999999987531 1000011122334578899999999888888775 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|+++..|+.++
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPRE 223 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHH
Confidence 99999999999999999999999999999999999987789999999997 57889999999999999999987654
No 138
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-41 Score=342.93 Aligned_cols=212 Identities=29% Similarity=0.444 Sum_probs=186.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +.+++|+|+++++||+++|+||||||||||+++|+|.+++. .|+|.++|++... .+
T Consensus 1 l~~~~l~~~~~~------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhh
Confidence 468999998752 46999999999999999999999999999999999999874 8999999986532 24
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+....+ ........++++++++.+||.+..++.+. .||||||||++||+
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~lar 143 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPS-----QLSGGQQQRVAIAR 143 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHH
Confidence 67999999999999999999998876543 22344456678899999999988888774 69999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.+
T Consensus 144 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~ 216 (232)
T cd03300 144 ALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPE 216 (232)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999875 89999999997 5788999999999999999888643
No 139
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=350.71 Aligned_cols=218 Identities=25% Similarity=0.379 Sum_probs=185.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++...
T Consensus 7 ~l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 7 RLRGEQLTLGYGK------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77 (265)
T ss_pred EEEEEEEEEEECC------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCcEEEECCEEhhhCCHH
Confidence 5889999998752 4699999999999999999999999999999999999887 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+......+ .....+..+++++++++.+||.+..++.++ .||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv 152 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD-----TLSGGQRQRA 152 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCChHHHHHH
Confidence 135699999999999999999999875311100 001122334578899999999888888764 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 89999999997 579999999999999999999986543
No 140
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-41 Score=351.59 Aligned_cols=215 Identities=26% Similarity=0.407 Sum_probs=185.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 7 ~l~~~nl~~~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 7 MIKVENVSFSYPN----SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDGITISKENLK 79 (271)
T ss_pred EEEEEeEEEEcCC----CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEecCcCCHH
Confidence 4789999988742 135699999999999999999999999999999999999987 48999999987531
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. .++.+||+||+.+..... ..+.++.+++++++++.+||.+..++.++ .||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl 151 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSGGQKQRV 151 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcc-----cCCHHHHHHH
Confidence 2457999999974 677789999999865432 23445556778999999999988888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|++. ++ ..||++++|++|+++..|+.++
T Consensus 152 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999876 599999999974 55 4799999999999999998654
No 141
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.4e-41 Score=344.06 Aligned_cols=199 Identities=32% Similarity=0.472 Sum_probs=173.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAY 103 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 103 (661)
|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++........+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 5799999999999999999999999999999999987 4899999998754322235899999999999999999988
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 045930 104 SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183 (661)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~ 183 (661)
......+ ....++.+++++++++.+||++..++.++ +||||||||++||++|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6431111 23344556678999999999988888775 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 184 FVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 184 ~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
.+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|+..
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 999999999875 89999999997 5788999999999999999888654
No 142
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=351.05 Aligned_cols=217 Identities=31% Similarity=0.420 Sum_probs=184.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++. +.+|+|+||++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++..
T Consensus 11 ~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 11 TFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEILLDAQPLESWSSK 81 (265)
T ss_pred eEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEehhhCCHH
Confidence 3789999988742 4699999999999999999999999999999999999887 4899999998642
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
..++.++|++|++.+++.+||.||+.+........ .....+.+++++++++.+||.+..++.++ .||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv 156 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSGGERQRA 156 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCHHHHHHH
Confidence 12356999999988889999999998753211000 01122345678899999999888888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+.++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999999999999875 89999999996 57889999999999999999987654
No 143
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.3e-41 Score=337.44 Aligned_cols=208 Identities=29% Similarity=0.439 Sum_probs=179.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---ccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~ 79 (661)
++++|+++.++. +++|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++.. ..+
T Consensus 1 ~~~~~l~~~~~~--------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 69 (213)
T TIGR01277 1 LALDKVRYEYEH--------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQ 69 (213)
T ss_pred CeEEeeeEEeCC--------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhc
Confidence 478999987641 467999999999999999999999999999999999874 899999998742 224
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+|+.||+.+...... . ...+.+++++++++.+||.+..++.+. .||||||||++||+
T Consensus 70 ~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~lar 141 (213)
T TIGR01277 70 RPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQRVALAR 141 (213)
T ss_pred cceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHHHHHHH
Confidence 579999999999999999999987643211 1 122235678899999999888888764 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|+++..|+
T Consensus 142 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 142 CLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999999875 89999999996 57788999999999999998875
No 144
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-41 Score=346.00 Aligned_cols=216 Identities=23% Similarity=0.321 Sum_probs=179.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 6 KMEARGLSFFYGD------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred EEEEeeeEEEECC------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 5789999998742 469999999999999999999999999999999999864 100148999999986421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++ .||+||+.+....+. ....++.+++++++++.+|+.+ ..++.+ +.||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 151 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESA-----LGLS 151 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc-----ccCC
Confidence 1457999999998888 499999998754321 1123344567889999999854 234444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|+++..
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 79999999997 578899999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 230 g~~~~ 234 (253)
T PRK14242 230 GPTEQ 234 (253)
T ss_pred CCHHH
Confidence 87543
No 145
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-41 Score=353.40 Aligned_cols=219 Identities=22% Similarity=0.310 Sum_probs=183.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++.. .+..+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+..
T Consensus 6 ~l~i~nl~~~~~~~-~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~ 81 (289)
T PRK13645 6 DIILDNVSYTYAKK-TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS---ETGQTIVGDYAIPANLKK 81 (289)
T ss_pred eEEEEEEEEEeCCC-CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEccccccc
Confidence 47899999987531 00113599999999999999999999999999999999999987 4899999997642
Q ss_pred -----cccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 77 -----LDYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 -----~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++. +++ .||+||+.+..... ....++..++++++++.++|. +..++.++ .||
T Consensus 82 ~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~-----~LS 152 (289)
T PRK13645 82 IKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPF-----ELS 152 (289)
T ss_pred cccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChh-----hCC
Confidence 11356999999973 344 59999999865422 233445556788999999994 67777664 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVIS 231 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 89999999996 57889999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|+.++.
T Consensus 232 ~g~~~~~ 238 (289)
T PRK13645 232 IGSPFEI 238 (289)
T ss_pred eCCHHHH
Confidence 9886543
No 146
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=345.02 Aligned_cols=210 Identities=26% Similarity=0.403 Sum_probs=180.7
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
|.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~l~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 2 NEIEFKEVSYSSF------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP---TEGSILIDGVDIKTIDV 72 (241)
T ss_pred ceEEEEeEEEEeC------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhhhcCh
Confidence 4789999998874 24699999999999999999999999999999999999887 4899999998642
Q ss_pred -cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHH
Q 045930 77 -LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqR 154 (661)
..++.++|++|++.+++ .||+||+.+....+ . ...++++++++.+||. +..++.+ ..||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHH
Confidence 12457999999998887 69999998754321 1 1134678899999996 5667655 4699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|+++..|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 99999999996 57888999999999999999887653
No 147
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-41 Score=341.83 Aligned_cols=210 Identities=27% Similarity=0.429 Sum_probs=181.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +. .|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ..
T Consensus 2 l~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLYHH------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLTLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEECC------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCeecCcCChhh
Confidence 789999998752 22 389999999999999999999999999999999987 48999999986432 23
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||.||+.+...... .. .++.+++++++++.+||++..|+.++ .||||||||++||+
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~lar 142 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVALAR 142 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHHHHHH
Confidence 569999999999999999999987532111 11 22345678999999999988888875 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+++.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|++++.|+.+
T Consensus 143 al~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~ 215 (232)
T PRK10771 143 CLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTD 215 (232)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999765 89999999997 5788999999999999999998754
No 148
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=6.2e-41 Score=348.49 Aligned_cols=221 Identities=20% Similarity=0.319 Sum_probs=185.7
Q ss_pred eEEEEEEEEEeecCCc---ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-
Q 045930 2 YLVWEEVTVVVPNFGS---GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~---~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~- 77 (661)
.|+++||++.++.... ...+.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCC
Confidence 4789999998852100 1124699999999999999999999999999999999999987 48999999987531
Q ss_pred ----ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHH
Q 045930 78 ----DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++. +++.+||.|++.+...... .....+..++++++++.+||. +..++.+. .||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G 153 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPH-----MLAPG 153 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCch-----hcCHH
Confidence 1346999999974 6788999999988765431 223445566789999999994 56676654 69999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++..+||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999875 89999999997 5788899999999999999888
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
+.++
T Consensus 233 ~~~~ 236 (267)
T PRK15112 233 STAD 236 (267)
T ss_pred CHHH
Confidence 7543
No 149
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-41 Score=341.22 Aligned_cols=212 Identities=30% Similarity=0.480 Sum_probs=185.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
|+++|+++.+.. ++|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+... .+
T Consensus 1 l~~~~l~~~~~~-------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKE-------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP---DSGKILLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCC-------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcCcCChhH
Confidence 467899887741 279999999999999999999999999999999999887 48999999987532 24
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||.||+.+..... ..+..+..+.+.++++.+||.+..++.+. .||||||||++||+
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~lar 142 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQRVAIAR 142 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHHHHHHH
Confidence 67999999999999999999998865332 23345556678899999999988888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++
T Consensus 143 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 143 ALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred HHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999775 99999999997 57888999999999999999887543
No 150
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-41 Score=346.75 Aligned_cols=216 Identities=25% Similarity=0.351 Sum_probs=181.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++..
T Consensus 13 ~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 13 KIQVRNLNFYYGK------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred eEEEEEEEEEeCC------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 4789999998742 469999999999999999999999999999999999975 21124899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ .||+||+.+...... ..+.++.+++++++++.+++. +..++.+ ..||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 158 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSG-----YSLS 158 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC-----CCCC
Confidence 11457999999998887 799999988754321 234455567789999999984 3445544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+++|++++|++|+++..
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 78999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 237 g~~~~ 241 (260)
T PRK10744 237 GNTDT 241 (260)
T ss_pred CCHHH
Confidence 87653
No 151
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.1e-41 Score=342.38 Aligned_cols=197 Identities=27% Similarity=0.413 Sum_probs=172.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----cccCeEEEEe-cCCCCCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----LDYGGVAYVT-QENIMLGTL 95 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~~~~~i~yv~-Q~~~l~~~l 95 (661)
+++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.+.. ..++.++|++ |++.+++.+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 57999999999999999999999999999999999998874 899999997632 1245799998 556788899
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 045930 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175 (661)
Q Consensus 96 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts 175 (661)
||+|++.+....+ ....++..++++++++.+||.+..|+.++ .||||||||++||++|+.+|++++|||||+
T Consensus 111 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 111 PVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 9999998876542 23345556678899999999988888775 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 176 GLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999875 89999999997 5788999999999999998765
No 152
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=343.46 Aligned_cols=217 Identities=23% Similarity=0.352 Sum_probs=182.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +....+|+|.++|++..
T Consensus 4 ~l~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 4 KVKLEQLNVHFGK------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred EEEEEEEEEEeCC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 3789999998752 469999999999999999999999999999999999975 31124799999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++.+||+||+.+..... ......+.+++++++++.+|+.+ ..++.+ +.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 150 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNA-----MELS 150 (252)
T ss_pred CChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc-----CcCC
Confidence 12457999999999999999999998765432 11233445567889999999864 334433 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++..
T Consensus 151 ~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 151 GGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 58999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 229 ~~~~~ 233 (252)
T PRK14256 229 GETKK 233 (252)
T ss_pred CCHHH
Confidence 88653
No 153
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=345.84 Aligned_cols=216 Identities=23% Similarity=0.359 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.++ +....+|+|.++|++..
T Consensus 12 ~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 12 VYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred eEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 5789999998742 469999999999999999999999999999999999986 32124899999998742
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||+||+.+....+ ....+++.+++++++++.+|+.+ ..++.+ ++||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~-----~~LS 157 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA-----LSLS 157 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc-----ccCC
Confidence 124579999999988886 9999998865432 11233455667888999999853 344444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++..
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999975 79999999997 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 236 g~~~~ 240 (259)
T PRK14274 236 NDTNK 240 (259)
T ss_pred CCHHH
Confidence 98654
No 154
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-41 Score=345.79 Aligned_cols=217 Identities=24% Similarity=0.371 Sum_probs=182.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. ...+|+|.++|++..
T Consensus 4 ~l~i~~v~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 5789999998752 46999999999999999999999999999999999998631 114899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++.+||+||+.+....+. ..+.++.+++++++++.+||. +..++.+ .+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 150 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPG-----GGLS 150 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc-----ccCC
Confidence 123579999999999999999999988764321 123445566788999999984 3445544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe------C
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS------G 222 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~------~ 222 (661)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|+ +
T Consensus 151 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~ 228 (258)
T PRK14241 151 GGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKP 228 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCC
Confidence 9999999999999999999999999999999999999999999965 68999999996 57889999999997 7
Q ss_pred CeEEEecCCCC
Q 045930 223 GETVYFGEAKS 233 (661)
Q Consensus 223 G~~v~~G~~~~ 233 (661)
|++++.|++++
T Consensus 229 g~i~~~~~~~~ 239 (258)
T PRK14241 229 GRLVEIDDTEK 239 (258)
T ss_pred ceEEecCCHHH
Confidence 99999987654
No 155
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=356.30 Aligned_cols=224 Identities=19% Similarity=0.212 Sum_probs=184.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeeEEEECCeeccc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-VVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~i~~~g~~~~~--- 77 (661)
.|+++||++.++.. +..+.+|+|||++|++||+++|+|+||||||||+++|+|+.++. ...+|+|.++|++...
T Consensus 3 ~L~v~~l~~~y~~~--~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTS--DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCC--CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 57899999998642 12356999999999999999999999999999999999998632 1248999999986421
Q ss_pred ------ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHcCCCcc---ccccccCcc
Q 045930 78 ------DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSN---MNNEEITDVIEEAITEMGLEDC---ADRLIGNWH 143 (661)
Q Consensus 78 ------~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~---~~~~~~~~~v~~~l~~lgL~~~---~d~~vg~~~ 143 (661)
.++.++||+|++. +.+.+||.+++.+......... ....+.++++.++++.+||.+. .++.+
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p---- 156 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP---- 156 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc----
Confidence 1246999999975 6788999999986532111000 1123446678999999999753 45554
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
.+|||||||||+||+||+.+|++||+||||+|||+.++.++++.|+++.++ |.|||++|||. ..+.+++|++++|++
T Consensus 157 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~ 234 (330)
T PRK15093 157 -YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYC 234 (330)
T ss_pred -hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 569999999999999999999999999999999999999999999999875 99999999996 578899999999999
Q ss_pred CeEEEecCCCC
Q 045930 223 GETVYFGEAKS 233 (661)
Q Consensus 223 G~~v~~G~~~~ 233 (661)
|++++.|+.++
T Consensus 235 G~ive~g~~~~ 245 (330)
T PRK15093 235 GQTVETAPSKE 245 (330)
T ss_pred CEEEEECCHHH
Confidence 99999998654
No 156
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-41 Score=378.43 Aligned_cols=220 Identities=21% Similarity=0.360 Sum_probs=189.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.+. ++.+|+|||+++++||+++|+||||||||||+|+|+|++++. ..+|+|.++|.+...
T Consensus 5 ~l~~~nl~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 5 LLEMKNITKTFG------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIR 77 (506)
T ss_pred eEEEeeeEEEeC------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHH
Confidence 478999999874 256999999999999999999999999999999999998751 138999999987531
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+....+.....+.++..++++++++.+||.+..++.++ +|||||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv 152 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGLGQQQLV 152 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHH
Confidence 135699999999999999999999987543211112344556678999999999888888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999999999987899999999996 578899999999999999999988765
No 157
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-41 Score=342.92 Aligned_cols=218 Identities=27% Similarity=0.368 Sum_probs=181.1
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+|+|.++|++...
T Consensus 1 ~~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 1 MIAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred CceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH
Confidence 56789999998852 569999999999999999999999999999999999874211248999999987531
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccCHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSgGe 151 (661)
.++.++|++|++.+++ .||+||+.+....+.. .....+.+++++++++.+||.+ ..++.+ +.|||||
T Consensus 75 ~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~ 147 (246)
T PRK14269 75 VALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNA-----LALSGGQ 147 (246)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHhcCCc-----ccCCHHH
Confidence 2457999999998887 6999999987543210 0122344566889999999953 344443 5699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++ +++.+++|++++|++|++++.|+.
T Consensus 148 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 225 (246)
T PRK14269 148 QQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGES 225 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999975 89999999996 578899999999999999999875
Q ss_pred CC
Q 045930 232 KS 233 (661)
Q Consensus 232 ~~ 233 (661)
++
T Consensus 226 ~~ 227 (246)
T PRK14269 226 KE 227 (246)
T ss_pred HH
Confidence 43
No 158
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=346.71 Aligned_cols=217 Identities=24% Similarity=0.344 Sum_probs=181.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. ...+|+|.++|++...
T Consensus 19 ~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 19 KMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred eEEEEeEEEEECC------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 4789999998742 46999999999999999999999999999999999998631 1148999999987421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++. ||.||+.+....+.. ..+..+.+++++++++.+||.+ ..++.+ +.||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEPG-----TGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCCc-----ccCC
Confidence 24569999999988875 999999987643311 1123444567899999999964 334444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +.+.++||++++|++|+++..
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 68999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 244 g~~~~ 248 (267)
T PRK14235 244 GDTEK 248 (267)
T ss_pred CCHHH
Confidence 87543
No 159
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-41 Score=319.86 Aligned_cols=219 Identities=26% Similarity=0.413 Sum_probs=195.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.+..++++.++.. ..+.+|+|||+++.+||.++++||||||||||||+++|..+|. .|+|.+||++..-....
T Consensus 3 ~l~~~~~sl~y~g----~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgae 75 (259)
T COG4525 3 MLNVSHLSLSYEG----KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAE 75 (259)
T ss_pred eeehhheEEecCC----cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCcc
Confidence 4566788887763 2266999999999999999999999999999999999999884 89999999987644445
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
-|.|+|++.++|.+||.||+.|+.+++ ++.+.++++++.+.+..+||++..++.+ -+|||||||||.|||||
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARAL 147 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARAL 147 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHh
Confidence 699999999999999999999999986 6788999999999999999999888876 46999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecCCCChhH
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS--GGETVYFGEAKSAPT 236 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~--~G~~v~~G~~~~~~~ 236 (661)
..+|++|+||||++.||.-+++++.+.|-++.++ |+.++++||+. +|..-+++++++|+ .|+++..=+++-...
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 9999999999999999999999999999999875 99999999996 67888999999998 689998777663333
No 160
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-41 Score=325.46 Aligned_cols=216 Identities=31% Similarity=0.470 Sum_probs=188.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD---- 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~---- 78 (661)
++.+|++|.+. .|++|++||++++|||++||+||||||||||||.|+|.+.|+ +|++.+||.+....
T Consensus 2 i~a~nls~~~~------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 2 IRAENLSYSLA------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred eeeeeeEEEee------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHH
Confidence 67899999986 378999999999999999999999999999999999999874 89999999875421
Q ss_pred -cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 79 -YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM--NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 79 -~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~--~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.+.-+.+||+..+-...||+|-+.++.. |... ...+..+.+++.|...++.+.+.+.. +.|||||||||
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRV 144 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRV 144 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHH
Confidence 3456899999888767799999999853 3322 22355667899999999999988876 46999999999
Q ss_pred HHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 156 SIALEILT------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 156 sIa~aL~~------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
.+||.|+. ++++||||||||.||...+..++++.++++++|..|+++.||.+ ....+||||++|.+||++..|
T Consensus 145 qlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g 223 (259)
T COG4559 145 QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASG 223 (259)
T ss_pred HHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecC
Confidence 99999987 45699999999999999999999999999999999999999975 688899999999999999999
Q ss_pred CCCChhH
Q 045930 230 EAKSAPT 236 (661)
Q Consensus 230 ~~~~~~~ 236 (661)
+++++..
T Consensus 224 ~p~~vlt 230 (259)
T COG4559 224 SPQDVLT 230 (259)
T ss_pred CHHHhcC
Confidence 9988753
No 161
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-41 Score=332.92 Aligned_cols=195 Identities=36% Similarity=0.638 Sum_probs=166.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----L 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~ 77 (661)
.++|+|+++.++.. +.++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+|+|.++|.+.. .
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKG--RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccC--CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 58999999999852 24567999999999999999999999999999999999998732125899999998743 1
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++.+||+||+.+.+... .++.+ ..||||||||++|
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~-----~~LS~Ge~qrl~l 129 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFV-----RGISGGERKRVSI 129 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccch-----hhCCHHHHHHHHH
Confidence 2457999999999999999999998764210 23333 4699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|++|+.+|+++||||||+|||+.++..+.+.|++++++ +.|+|+++|+..+++.+++|++++|++|++++.|
T Consensus 130 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 130 AEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999876 6787777776556788999999999999998765
No 162
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=347.08 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=186.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~---~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEK---ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE---FEGKVKIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCC---CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCEEEECCEECCcCCHH
Confidence 5889999998852 1124599999999999999999999999999999999999987 48999999987531
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. .++..||.||+.+..... ..+.++..++++++++.+||.+..++.++ .||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 149 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPA-----RLSGGQKQRV 149 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHH
Confidence 2457999999974 677789999998865432 23455556788999999999988888764 6999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++. .+|++++|++|+++..|++++.
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~ 227 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSEL 227 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999876 999999999974 554 6999999999999999987654
No 163
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.3e-41 Score=376.76 Aligned_cols=218 Identities=23% Similarity=0.426 Sum_probs=189.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+. ++.+|+|+||++++||+++|+|||||||||||++|+|.+++. +|+|.++|.+...
T Consensus 4 ~i~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFP------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeC------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 478999999874 256999999999999999999999999999999999999874 8999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+.. ...+.++.+++++++++.+||.+..|+.++ .||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 149 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQM 149 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHH
Confidence 135699999999999999999999986532210 112334455678999999999988888875 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++||+ .++.++||++++|++|+++..|++++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999999999987899999999997 578899999999999999999988764
No 164
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.7e-41 Score=367.60 Aligned_cols=227 Identities=28% Similarity=0.397 Sum_probs=198.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeeEEEECCeecc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-VVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~i~~~g~~~~---- 76 (661)
-|+++||++.+... +....+++||||++++||++||+|.|||||||+.++|.|+++.+ ...+|+|.++|++..
T Consensus 5 lL~V~nL~v~~~~~--~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFATD--GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEecC--CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 47899999999864 23357999999999999999999999999999999999999765 456899999997521
Q ss_pred -----cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 77 -----LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 77 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
.+.+.|+|++|++ .+.|-+||.+.+.-....+. ..++++.++++.++|+.+||.+.... +.++++|||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSG 157 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSG 157 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCc
Confidence 2346799999997 56777999999998877764 23488889999999999999886665 345678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||.||+||+.+|++||+||||++||+.++.+|++.|+++.++ |.++|++|||+ ..+.++||||++|.+|++|+.
T Consensus 158 G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999864 99999999997 588999999999999999999
Q ss_pred cCCCChhH
Q 045930 229 GEAKSAPT 236 (661)
Q Consensus 229 G~~~~~~~ 236 (661)
|+++++..
T Consensus 237 G~~~~i~~ 244 (539)
T COG1123 237 GPTEEILS 244 (539)
T ss_pred cCHHHHHh
Confidence 99877654
No 165
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.7e-41 Score=360.20 Aligned_cols=206 Identities=28% Similarity=0.440 Sum_probs=179.5
Q ss_pred EEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------c
Q 045930 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---------L 77 (661)
Q Consensus 7 ~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---------~ 77 (661)
||++.++. +. + |+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++.. .
T Consensus 4 ~l~~~~~~------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGD------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECC------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccch
Confidence 66766531 23 4 999999999999999999999999999999999874 899999998642 1
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++.+||+||+.+..... ...+.+++++++++.+||.+..|+.++ +|||||||||+|
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRval 142 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAI 142 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHH
Confidence 2457999999999999999999999875421 223445678999999999998888875 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++..++|++++|++|+++..|++++.
T Consensus 143 AraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 143 GRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999999999999999876 89999999997 578899999999999999999987653
No 166
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-41 Score=348.20 Aligned_cols=220 Identities=28% Similarity=0.379 Sum_probs=183.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----CceeeEEEECCeeccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-----VVMTGNVLLNGKKRRL 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-----~~~~G~i~~~g~~~~~ 77 (661)
|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|.+...
T Consensus 2 l~~~nl~~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~ 75 (272)
T PRK13547 2 LTADHLHVARR------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 (272)
T ss_pred eEEEEEEEEEC------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEccc
Confidence 78999999874 256999999999999999999999999999999999998763 1127999999987531
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.++.++|++|++.+++.+||+||+.+....... .....++..++++++++.+||.+..++.++ .|||||
T Consensus 76 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~ 150 (272)
T PRK13547 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVT-----TLSGGE 150 (272)
T ss_pred CCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHH
Confidence 134589999998766679999999875321100 011113345678899999999888777664 599999
Q ss_pred HHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 152 KKRLSIALEIL---------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 152 rqRvsIa~aL~---------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~ 229 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLA 229 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEE
Confidence 99999999999 599999999999999999999999999999876 89999999997 57888999999999
Q ss_pred CCeEEEecCCCCh
Q 045930 222 GGETVYFGEAKSA 234 (661)
Q Consensus 222 ~G~~v~~G~~~~~ 234 (661)
+|++++.|++++.
T Consensus 230 ~G~i~~~g~~~~~ 242 (272)
T PRK13547 230 DGAIVAHGAPADV 242 (272)
T ss_pred CCeEEEecCHHHH
Confidence 9999999886543
No 167
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=341.84 Aligned_cols=216 Identities=25% Similarity=0.374 Sum_probs=179.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.+.. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 3789999998752 469999999999999999999999999999999999853 42123799999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ +||+||+.+....+ + ....+..+++++++++.+++.+ ..++.+ +.||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 150 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA-----LGLS 150 (252)
T ss_pred cchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc-----ccCC
Confidence 11457999999998887 79999999875432 1 1123334567888999998753 344444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 69999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 229 g~~~~ 233 (252)
T PRK14239 229 NDTKQ 233 (252)
T ss_pred CCHHH
Confidence 88654
No 168
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=341.03 Aligned_cols=216 Identities=24% Similarity=0.326 Sum_probs=179.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCceeeEEEECCeeccc-
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRL- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~---~~~~~~~G~i~~~g~~~~~- 77 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++. ..+|+|.++|++...
T Consensus 3 ~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 3 KIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDK 75 (250)
T ss_pred EEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccc
Confidence 5789999988742 56999999999999999999999999999999999973 321 137999999987421
Q ss_pred ------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCcccccc
Q 045930 78 ------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC----ADRLIGNWHWRGI 147 (661)
Q Consensus 78 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~----~d~~vg~~~~~~L 147 (661)
.++.++|++|++.+++ .||.||+.+....+. ....++.++.++++++.+||.+. .++.+ +.|
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~L 147 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESA-----FAL 147 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc-----ccC
Confidence 1356999999998887 599999988754431 11223345678899999998643 34444 469
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||+++|++ .++.++||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 148 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999995 479999999997 47889999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|++++.
T Consensus 226 ~~~~~~~ 232 (250)
T PRK14245 226 YDDTKKI 232 (250)
T ss_pred ECCHHHH
Confidence 9986543
No 169
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=340.54 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..+ +....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4789999998752 469999999999999999999999999999999999865 221248999999987421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++ +||+||+.+....+. ..+.++.+++++++++.+++. +..++.+ +.||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 148 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA-----LGLS 148 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC-----CCCC
Confidence 2456999999988887 899999998754321 112344567788899999875 3345544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++|++++|++|+++..
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 79999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 227 ~~~~~ 231 (250)
T PRK14240 227 GDTVD 231 (250)
T ss_pred CCHHH
Confidence 87543
No 170
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=359.34 Aligned_cols=205 Identities=27% Similarity=0.452 Sum_probs=179.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
|++ ||++.++. +. + |+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++..
T Consensus 2 l~~-~l~k~~~~------~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQLGD------LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEeCC------EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccccc
Confidence 455 77776642 22 3 899999999999999999999999999999999874 899999997642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
..++.++|++|+..+++.+||+||+.+... ...+++++++++.+||++..++.++ +|||||||
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~q 135 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQ 135 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHH
Confidence 124679999999999999999999988642 1224568899999999988888775 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++..++|++++|++|+++..|+++
T Consensus 136 RvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~ 214 (352)
T PRK11144 136 RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLE 214 (352)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999876 89999999996 5899999999999999999999876
Q ss_pred Ch
Q 045930 233 SA 234 (661)
Q Consensus 233 ~~ 234 (661)
+.
T Consensus 215 ~i 216 (352)
T PRK11144 215 EV 216 (352)
T ss_pred HH
Confidence 54
No 171
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.1e-40 Score=342.74 Aligned_cols=215 Identities=24% Similarity=0.330 Sum_probs=181.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee-----cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-----RR 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~-----~~ 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++ ..
T Consensus 6 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLYGP------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP---DAGEVHYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEcCC------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCccccccccc
Confidence 4789999998752 4699999999999999999999999999999999999987 48999999976 32
Q ss_pred c---------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccc
Q 045930 77 L---------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHW 144 (661)
Q Consensus 77 ~---------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~ 144 (661)
. .++.++|++|++ .+++.+|+.||+.+...... .....+.+++++++++.+++.+ ..++.++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 150 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPT---- 150 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCc----
Confidence 1 134699999997 46788899999976543210 1122345667889999999974 6677664
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.+++|++++|++|
T Consensus 151 -~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g 228 (258)
T PRK11701 151 -TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQG 228 (258)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 59999999999999999999999999999999999999999999999875 89999999996 5788899999999999
Q ss_pred eEEEecCCCC
Q 045930 224 ETVYFGEAKS 233 (661)
Q Consensus 224 ~~v~~G~~~~ 233 (661)
++++.|++++
T Consensus 229 ~i~~~~~~~~ 238 (258)
T PRK11701 229 RVVESGLTDQ 238 (258)
T ss_pred EEEEeCCHHH
Confidence 9999998654
No 172
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=341.68 Aligned_cols=216 Identities=25% Similarity=0.351 Sum_probs=181.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
-++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++. ...+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 4 KMESKNLNLWYG------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred EEEEEEeEEEEC------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 478899998874 256999999999999999999999999999999999987641 1148999999987521
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++ +||+||+.+...... .....+.+++++++++.+||. +..++.+ +.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 149 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSA-----LKLS 149 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc-----ccCC
Confidence 1456999999998887 899999998754321 112344556788899999884 3345544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.
T Consensus 150 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999976 58999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 228 ~~~~~ 232 (251)
T PRK14270 228 NKTEK 232 (251)
T ss_pred CCHHH
Confidence 98654
No 173
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-41 Score=342.74 Aligned_cols=223 Identities=26% Similarity=0.345 Sum_probs=198.8
Q ss_pred eEEEEEEEEEeecCC--------ccc----------ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 045930 2 YLVWEEVTVVVPNFG--------SGP----------TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV 63 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~--------~~~----------~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~ 63 (661)
.++++|+...+.... .|. ...-++|+|++++.||+..|||-||||||||+++|.++.+|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--- 80 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--- 80 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC---
Confidence 478888888765310 011 12358999999999999999999999999999999999998
Q ss_pred eeeEEEECCeecc---------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 045930 64 MTGNVLLNGKKRR---------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134 (661)
Q Consensus 64 ~~G~i~~~g~~~~---------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 134 (661)
..|+|+++|++.. .+++.+++|+|...|+|+.||.||..|+..++ +.+++|+++++.++|+.+||+..
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 4999999998642 23578999999999999999999999998876 68899999999999999999999
Q ss_pred ccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhh
Q 045930 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 135 ~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~ 213 (661)
.++++. +|||||||||.+||||+.+|+||++|||+|.|||--+.++.+.|.+|.++ ++||+++|||. +|.+++
T Consensus 158 ~~~yp~-----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlri 231 (386)
T COG4175 158 ADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRI 231 (386)
T ss_pred hhcCcc-----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhc
Confidence 999875 69999999999999999999999999999999999999999999999765 89999999995 799999
Q ss_pred cCeEEEEeCCeEEEecCCCChhH
Q 045930 214 FDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 214 ~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
-|||.+|++|++|..|++++.+.
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999987653
No 174
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=341.06 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=177.8
Q ss_pred EEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeeccc----
Q 045930 4 VWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~~---- 77 (661)
+++|+++.++ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 7 ~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 7 SVKNLNLWYG------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred EeeeEEEEEC------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 5778888764 2569999999999999999999999999999999999975 211248999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCccccccCHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC----ADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~----~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.+++. ||+||+.+....+. .....++.++.++++++.+||.+. .++.+ ++||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G 153 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSA-----FELSGG 153 (251)
T ss_pred hHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcCh-----hhCCHH
Confidence 24579999999988886 99999988744321 111233445678899999999752 34433 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 89999999997 57888999999999999999887
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 232 ~~~ 234 (251)
T PRK14244 232 TQE 234 (251)
T ss_pred HHH
Confidence 543
No 175
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-40 Score=332.90 Aligned_cols=200 Identities=30% Similarity=0.466 Sum_probs=173.0
Q ss_pred EEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------c
Q 045930 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---------L 77 (661)
Q Consensus 7 ~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---------~ 77 (661)
+|++.+++ +.+ |+|+++++ |+++|+||||||||||+++|+|.+++. +|+|.++|.+.. .
T Consensus 5 ~l~~~~~~------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRLPD------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEecCC------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhh
Confidence 67776642 334 99999999 999999999999999999999999874 899999997642 1
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++.+||+||+.+..... ..+..+++++++++.+|+.+..++.++ .||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~l 142 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPA-----QLSGGEKQRVAL 142 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcc-----cCCHHHHHHHHH
Confidence 2357999999999999999999998765321 233345678899999999887777764 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|+++..|
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 143 ARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999876 89999999996 5788899999999999998765
No 176
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=376.26 Aligned_cols=218 Identities=22% Similarity=0.341 Sum_probs=188.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++.+|+|+||++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSFG------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP---TKGTITINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEcC------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC---CccEEEECCEECCCCCHH
Confidence 478999999874 25699999999999999999999999999999999999987 48999999987531
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRL-PSN---MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.++.++|++|++.+++.+||+||+.+...... ..+ ...++.+++++++++.+||.+..|+.++ +|||||
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~ 150 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSISH 150 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHHH
Confidence 12469999999999999999999987542110 001 1234456778999999999988888875 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999999988899999999996 578899999999999999999988
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
++.
T Consensus 230 ~~~ 232 (510)
T PRK09700 230 SDV 232 (510)
T ss_pred hhC
Confidence 764
No 177
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-40 Score=340.20 Aligned_cols=217 Identities=24% Similarity=0.357 Sum_probs=180.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|.+++.. ..+|+|.++|.+..
T Consensus 4 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYG------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEEC------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 467899998874 2569999999999999999999999999999999999986531 13799999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++.+|+.||+.+..... .....++..+.+++.++.+++. +..++.+ +.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 150 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKTPA-----TGLS 150 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCc-----ccCC
Confidence 11456999999999999999999998765432 1112344456677778888764 3445554 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 79999999997 578889999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 229 ~~~~~ 233 (252)
T PRK14272 229 GPTDQ 233 (252)
T ss_pred CCHHH
Confidence 87654
No 178
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=340.10 Aligned_cols=216 Identities=23% Similarity=0.382 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG--NVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYG------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeC------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 478999999874 25699999999999999999999999999999999999763 11148999999986421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++ .||+||+.+...... ....++.++.++++++.+|+.+ ..++.+ ++||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 148 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPG-----TRLS 148 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh-----hhcC
Confidence 2457999999998887 899999998754321 1123344566888999999864 344444 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++|++++|++|+++..
T Consensus 149 ~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 79999999997 468899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 227 g~~~~ 231 (250)
T PRK14262 227 GPTRE 231 (250)
T ss_pred cCHHH
Confidence 98654
No 179
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.4e-40 Score=332.13 Aligned_cols=196 Identities=30% Similarity=0.442 Sum_probs=170.1
Q ss_pred EEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------
Q 045930 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--------- 76 (661)
Q Consensus 6 ~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--------- 76 (661)
+|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++..
T Consensus 2 ~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 2 KNISKKFG------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred cceEEEEC------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccchhhHHH
Confidence 67777764 24699999999999999999999999999999999999987 4899999998732
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
..++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||++..++.++ +||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr~~ 144 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGGEQQRVA 144 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHHHHHHHH
Confidence 12357999999999999999999999875432 23344556778999999999888888774 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ..+.||++++|
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999999999999999999999877999999999973 44689999875
No 180
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.6e-40 Score=333.02 Aligned_cols=209 Identities=27% Similarity=0.445 Sum_probs=180.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.+.+.+|+|+||++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~~--~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYYGH--GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLKVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEccC--CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEhHhcCHhH
Confidence 689999998753 11125799999999999999999999999999999999999887 48999999987521
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+|+.||+.+...... ..+.++.+++++++++.+||.+..++.+. .||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr 149 (220)
T TIGR02982 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPH-----NLSGGQKQR 149 (220)
T ss_pred HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHH
Confidence 23579999999999999999999998765321 13455566789999999999888888764 699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. +.++||++++|++|++
T Consensus 150 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 150 VAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999987 4899999999973 5689999999999985
No 181
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=341.72 Aligned_cols=216 Identities=23% Similarity=0.337 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|++...
T Consensus 20 ~l~~~nl~~~~~------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 20 ALSTKDLHVYYG------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred EEEEeeEEEEEC------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 578999998874 256999999999999999999999999999999999998631 1258999999986521
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++ .||+||+.+..... ....+++.++++.++++.++|.+ ..++. ++.||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~-----~~~LS 165 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHKS-----ALTLS 165 (267)
T ss_pred CChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcCC-----cccCC
Confidence 1457999999988887 59999999875431 11234455677889999999854 34443 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 79999999997 478899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 244 g~~~~ 248 (267)
T PRK14237 244 DKTRN 248 (267)
T ss_pred CCHHH
Confidence 98654
No 182
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.4e-41 Score=313.29 Aligned_cols=210 Identities=29% Similarity=0.411 Sum_probs=185.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
++.++++.++.. ......||++|++.+++||-+||+|||||||||||-+++|+..++ +|+|.+.|++..
T Consensus 7 i~~~~l~ktvg~--~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 7 IEVHHLSKTVGQ--GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eehhhhhhhhcC--CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHH
Confidence 567778877764 223467999999999999999999999999999999999998884 999999998642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.+.+++|+|+|...++|+||..||+...+.++- .+..+..+...++|+.+||.+..+.+++ +|||||+|
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g---e~~~~~~~~A~~lL~~vGLg~Rl~HyP~-----qLSGGEQQ 153 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---ESSADSRAGAKALLEAVGLGKRLTHYPA-----QLSGGEQQ 153 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcC---CccccHHHHHHHHHHHhCcccccccCcc-----ccCchHHH
Confidence 234789999999999999999999999988762 2344556678899999999998888775 69999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
||+||||++..|+|||.||||.+||..+..+|.+.|-.+.++ |.|.|++|||| .+..-|||.+-|.+|+++.
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999999875 99999999997 5888999999999999874
No 183
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.1e-40 Score=337.02 Aligned_cols=202 Identities=27% Similarity=0.351 Sum_probs=171.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeeEEEECCeeccc---ccCeEEEEecCCC--CCCCCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-VVMTGNVLLNGKKRRL---DYGGVAYVTQENI--MLGTLT 96 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~i~~~g~~~~~---~~~~i~yv~Q~~~--l~~~lT 96 (661)
+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++... .++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999998761 0138999999987532 1357999999984 567789
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC---ccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE---DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~---~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP 173 (661)
++|++.+..... .....+.+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYPF-----QLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998765432 112234456789999999998 45666654 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 174 TSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||+.++..+.+.|++++++ |+|||+++|++ +++..++|++++|++|+++..|++++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 212 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKE 212 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999875 89999999997 57889999999999999999987543
No 184
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=342.34 Aligned_cols=216 Identities=22% Similarity=0.336 Sum_probs=178.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 21 ~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 21 ILEVKDLSIYYG------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred eEEEEEEEEEeC------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 378999999874 2569999999999999999999999999999999999753 111148999999986421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++. ||+||+.+...... .......++.+.+.++.+++. +..++.+ ..||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 166 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA-----LSLS 166 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc-----ccCC
Confidence 24579999999988885 99999988653221 112233455678889999885 3345554 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.
T Consensus 167 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 68999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 245 ~~~~~ 249 (268)
T PRK14248 245 DQTEQ 249 (268)
T ss_pred CCHHH
Confidence 87543
No 185
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-40 Score=343.79 Aligned_cols=215 Identities=23% Similarity=0.352 Sum_probs=178.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|++..
T Consensus 13 ~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 13 IISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred eEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 5789999998752 56999999999999999999999999999999999997621 024899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||+||+.+.+..+ ... .+.+++++++++.+++. +..|+.+ +.||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 156 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKLNESG-----YSLS 156 (269)
T ss_pred CCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCc-----ccCC
Confidence 123569999999988885 9999999876542 122 23345678888888874 3345544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC------
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG------ 222 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~------ 222 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++
T Consensus 157 ~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999965 79999999997 578999999999996
Q ss_pred -----CeEEEecCCCCh
Q 045930 223 -----GETVYFGEAKSA 234 (661)
Q Consensus 223 -----G~~v~~G~~~~~ 234 (661)
|++++.|+++++
T Consensus 235 ~~g~~g~~~~~~~~~~~ 251 (269)
T PRK14259 235 SGGKVGYLVEFNETKKI 251 (269)
T ss_pred cccccceEEEeCCHHHH
Confidence 668998887554
No 186
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.7e-40 Score=373.54 Aligned_cols=211 Identities=20% Similarity=0.343 Sum_probs=186.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++...
T Consensus 11 ~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQYS------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEeC------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 478999999874 256999999999999999999999999999999999999874 8999999986431
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++.++ +|||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv 149 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEVADRQIV 149 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCHHHHHHH
Confidence 124699999999999999999999875321 12345678899999999988888875 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 150 ~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999999999999999999999999999999999988899999999996 578899999999999999999987654
No 187
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-40 Score=339.81 Aligned_cols=217 Identities=23% Similarity=0.355 Sum_probs=181.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|+||||||||+++|+|+.++.. ..+|+|.++|++..
T Consensus 7 ~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 7 AIKVKDLSFYYNT------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred eEEEEEEEEEECC------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 4789999988742 469999999999999999999999999999999999987421 13899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ +||+||+.+....+. ...+.+..++++++++.+|+. +..++.+ +.||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 152 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSA-----LGLS 152 (259)
T ss_pred cchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCc-----ccCC
Confidence 12356999999998887 899999988754321 123344456788899999884 3445544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-----CC
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS-----GG 223 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~-----~G 223 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|+ +|
T Consensus 153 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G 230 (259)
T PRK14260 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIG 230 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCc
Confidence 9999999999999999999999999999999999999999999976 69999999997 58899999999998 59
Q ss_pred eEEEecCCCCh
Q 045930 224 ETVYFGEAKSA 234 (661)
Q Consensus 224 ~~v~~G~~~~~ 234 (661)
++++.|++++.
T Consensus 231 ~i~~~~~~~~~ 241 (259)
T PRK14260 231 QMVEFGVTTQI 241 (259)
T ss_pred eEEEeCCHHHH
Confidence 99999987643
No 188
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-40 Score=337.93 Aligned_cols=215 Identities=25% Similarity=0.344 Sum_probs=179.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.+..
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYG------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEEC------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 688999999874 256999999999999999999999999999999999998641 014799999997642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccCH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGISG 149 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSg 149 (661)
..++.++|++|++.+++ .||.||+.+..... ....+++.++++++.++.+|+.+ ..++.+ .+|||
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~ 148 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA-----FGLSG 148 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCc-----ccCCH
Confidence 12456999999998887 79999998865432 11123344567888889888753 334444 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|
T Consensus 149 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g 226 (249)
T PRK14253 149 GQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHD 226 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 58999999997 5789999999999999999998
Q ss_pred CCC
Q 045930 230 EAK 232 (661)
Q Consensus 230 ~~~ 232 (661)
+.+
T Consensus 227 ~~~ 229 (249)
T PRK14253 227 DTQ 229 (249)
T ss_pred CHH
Confidence 754
No 189
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-40 Score=337.33 Aligned_cols=216 Identities=27% Similarity=0.388 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..+ +....+|+|.++|++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 4789999998752 469999999999999999999999999999999999986 21124899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ .||+||+.+...... ....+..+++++++++.+++. +..++.+ ++||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 149 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNA-----QAFS 149 (251)
T ss_pred chHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccCh-----hhCC
Confidence 12456999999998886 799999987654321 112333456788899999984 3344444 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+++|++++|++|+++..
T Consensus 150 ~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 69999999997 578899999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 228 ~~~~~ 232 (251)
T PRK14251 228 GPTEE 232 (251)
T ss_pred CCHHH
Confidence 87653
No 190
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-40 Score=337.33 Aligned_cols=216 Identities=23% Similarity=0.322 Sum_probs=179.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.+.. +.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+..
T Consensus 4 ~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 4789999998742 469999999999999999999999999999999999987631 12699999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||+||+.+....+. ....++.++.++++++.++|.+ ..++.+ ..||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 149 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNLHKSG-----LALS 149 (251)
T ss_pred cChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHhhCCc-----ccCC
Confidence 124679999999988875 99999998754321 1122334566788888888753 344443 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|++ +++.++||++++|++|++++.
T Consensus 150 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999995 589999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 228 ~~~~~ 232 (251)
T PRK14249 228 GRTGE 232 (251)
T ss_pred CCHHH
Confidence 87543
No 191
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-40 Score=337.37 Aligned_cols=216 Identities=23% Similarity=0.339 Sum_probs=179.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG--NVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 6 ILSTKNLNLWYG------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred eEEEeeeEEEEC------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 478999998874 25699999999999999999999999999999999998652 11137999999987421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+ ..++.+ +.||
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 151 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSA-----LSLS 151 (253)
T ss_pred cchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcCh-----hhCC
Confidence 14569999999988885 99999998765431 1123344567888899988853 234444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|+++..
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEc
Confidence 9999999999999999999999999999999999999999999976 58999999996 578889999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 230 g~~~~ 234 (253)
T PRK14261 230 DKTTQ 234 (253)
T ss_pred CCHHH
Confidence 88653
No 192
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8e-40 Score=337.72 Aligned_cols=214 Identities=26% Similarity=0.337 Sum_probs=179.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-ceeeEEEECCeeccc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV-VMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~i~~~g~~~~~--- 77 (661)
.|+++|+++.+ . +.+|+|+|+++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 76 (254)
T PRK10418 4 QIELRNIALQA-A------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCAL 76 (254)
T ss_pred EEEEeCeEEEe-c------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccc
Confidence 47899999876 1 459999999999999999999999999999999999987621 148999999987531
Q ss_pred ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCccccccCHHHH
Q 045930 78 DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED---CADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 ~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~~LSgGer 152 (661)
.++.++|++|++. +.+.+|+.+++.+.+... .... .++++.++++.+||.+ ..++.+ +.||||||
T Consensus 77 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~Gq~ 146 (254)
T PRK10418 77 RGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYP-----FEMSGGML 146 (254)
T ss_pred ccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCC-----cccCHHHH
Confidence 2356999999974 456689999987754322 1112 2367889999999976 356655 46999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|++++.|++
T Consensus 147 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~ 225 (254)
T PRK10418 147 QRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDV 225 (254)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999875 89999999996 578889999999999999999886
Q ss_pred CC
Q 045930 232 KS 233 (661)
Q Consensus 232 ~~ 233 (661)
++
T Consensus 226 ~~ 227 (254)
T PRK10418 226 ET 227 (254)
T ss_pred HH
Confidence 54
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1e-39 Score=339.53 Aligned_cols=222 Identities=24% Similarity=0.289 Sum_probs=185.9
Q ss_pred eEEEEEEEEEeecC---CcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-
Q 045930 2 YLVWEEVTVVVPNF---GSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~- 77 (661)
.|+++|+++.++.. +...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccc
Confidence 47899999987520 111135799999999999999999999999999999999999887 48999999986421
Q ss_pred -------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccccc
Q 045930 78 -------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGI 147 (661)
Q Consensus 78 -------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 147 (661)
.++.++|++|++ .+.+..|+.|++.+..... ......+...+++++++.+|+. +..++.++ .|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRPP-----QL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCCc-----cC
Confidence 135799999997 4677899999997754311 1223445556789999999997 56777664 59
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999875 89999999996 5788899999999999999
Q ss_pred EecCCCCh
Q 045930 227 YFGEAKSA 234 (661)
Q Consensus 227 ~~G~~~~~ 234 (661)
+.|++++.
T Consensus 232 ~~g~~~~~ 239 (268)
T PRK10419 232 ETQPVGDK 239 (268)
T ss_pred eeCChhhc
Confidence 99987653
No 194
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.6e-39 Score=334.88 Aligned_cols=219 Identities=26% Similarity=0.370 Sum_probs=181.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR--LSGNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++. +.+|+|||+++++||+++|+||||||||||+++|+|+ +++ .+|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEeCC------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccCC
Confidence 3789999988742 4699999999999999999999999999999999997 344 48999999986431
Q ss_pred ---cc-CeEEEEecCCCCCCCCCHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 78 ---DY-GGVAYVTQENIMLGTLTVRETIAYSAHLRLP----SNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 ---~~-~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
.. ..++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+. +..++.++ .+||
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS 153 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFS 153 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCC
Confidence 11 2488999999999999999999875432110 0112233456788899999997 45666653 1499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~ 227 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +.+... +|++++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999987799999999996 456665 89999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|+++.+
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9988743
No 195
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.8e-40 Score=369.30 Aligned_cols=218 Identities=23% Similarity=0.402 Sum_probs=185.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++ ++.+|+|||+++++||+++|+|||||||||||++|+|+.++. ..+|+|.++|++...
T Consensus 2 l~i~~l~~~~~------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 2 LEMKGIVKTFG------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred EEEEeEEEEeC------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 68899999874 256999999999999999999999999999999999998751 138999999986532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCccccccCHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCA-DRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+........ ....++.+++++++++.+||.+.. ++.++ .||||||||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qr 149 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVG-----DYGGGQQQL 149 (500)
T ss_pred HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchh-----hCCHHHHHH
Confidence 1356999999999999999999998865432111 123344566789999999998754 45554 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 9999999999999999999999999999999999999988899999999996 57889999999999999999988765
No 196
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=338.13 Aligned_cols=218 Identities=26% Similarity=0.377 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.+.. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +..+|+|.++|++..
T Consensus 7 ~l~~~nl~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 7 AIKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred eEEEeeEEEEeCC------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence 4789999998742 46999999999999999999999999999999999998752 234799999997642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ +||+||+.+...... ..+..+.++++.++++.+++.+ ..++.+ ..||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 152 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSA-----LDLS 152 (261)
T ss_pred cchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc-----ccCC
Confidence 11456999999988888 899999988654321 1133344567889999999854 334443 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeC-----
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSG----- 222 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~----- 222 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++ .++.++||++++|++
T Consensus 153 gGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~ 231 (261)
T PRK14258 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRI 231 (261)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcC
Confidence 9999999999999999999999999999999999999999999976 489999999997 578999999999999
Q ss_pred CeEEEecCCCCh
Q 045930 223 GETVYFGEAKSA 234 (661)
Q Consensus 223 G~~v~~G~~~~~ 234 (661)
|++++.|++++.
T Consensus 232 G~i~~~~~~~~~ 243 (261)
T PRK14258 232 GQLVEFGLTKKI 243 (261)
T ss_pred ceEEEeCCHHHH
Confidence 999999987654
No 197
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=335.66 Aligned_cols=216 Identities=25% Similarity=0.355 Sum_probs=177.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 5 IITSSDVHLFYGK------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred eEEEEeEEEEECC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 4789999998742 569999999999999999999999999999999999864 31113899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ .||.||+.+....+. ....+..++++.+.++.+++. +..++.+ ..||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~-----~~LS 150 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESA-----LSLS 150 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCc-----ccCC
Confidence 12457999999998888 699999998754321 112233345677788888774 3344444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+.+|++++|++|+++..
T Consensus 151 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 151 GGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 58999999997 578899999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++.+
T Consensus 229 ~~~~~ 233 (252)
T PRK14255 229 ADTKQ 233 (252)
T ss_pred CCHHH
Confidence 87653
No 198
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=339.93 Aligned_cols=216 Identities=25% Similarity=0.350 Sum_probs=180.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 25 ALEVRNLNLFYGD------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred EEEEEEEEEEECC------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3788999998742 46999999999999999999999999999999999997631 1248999999987421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++. ||+||+.+....+ ....+++.+++++++++.+++.+ ..++.+ +.||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 170 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRLHENA-----FGLS 170 (272)
T ss_pred cCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc-----ccCC
Confidence 24579999999988886 9999998875432 11123344567888999999864 344443 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+.||++++|++|+++..
T Consensus 171 ~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999976 78999999997 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 249 g~~~~ 253 (272)
T PRK14236 249 GDTDT 253 (272)
T ss_pred CCHHH
Confidence 87543
No 199
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.9e-40 Score=338.59 Aligned_cols=210 Identities=28% Similarity=0.456 Sum_probs=168.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 1 i~~~~l~~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKP----DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP---ENGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCC----CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCeehHhcCHHH
Confidence 468899988742 125699999999999999999999999999999999999987 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccccccCHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD-----VIEEAITEM--GLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.+++ .||+||+.+... .....+..+ ...+.++.+ ++++..++.+ +.||||
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-----~~LSgG 142 (237)
T cd03252 74 LRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQG-----AGLSGG 142 (237)
T ss_pred HhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCC-----CcCCHH
Confidence 2456999999988775 699999987431 111211111 123344444 4444444444 569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..||++++|++|++++.|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~ 219 (237)
T cd03252 143 QRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGS 219 (237)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999974 899999999974 55 4699999999999999988
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 220 ~~~ 222 (237)
T cd03252 220 HDE 222 (237)
T ss_pred HHH
Confidence 654
No 200
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.2e-39 Score=322.99 Aligned_cols=188 Identities=54% Similarity=0.874 Sum_probs=164.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++....+..+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|++...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCchHh
Confidence 578999999886311111356999999999999999999999999999999999998 76 48999999987532
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++.+|++||+.+...+. .||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~qrv~l 122 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGERKRVSI 122 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHHHHHHH
Confidence 3467999999999999999999998653210 399999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++..++.+++|++++|++|++++.|
T Consensus 123 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998779999999999855688899999999999998764
No 201
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-39 Score=335.99 Aligned_cols=215 Identities=26% Similarity=0.339 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee-----cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-----RR 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~-----~~ 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++ ..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSYGG------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP---DHGTATYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEeCC------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEEecccccccccc
Confidence 4789999998752 4589999999999999999999999999999999999887 48999999865 21
Q ss_pred c---------ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 045930 77 L---------DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHW 144 (661)
Q Consensus 77 ~---------~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~ 144 (661)
. .++.++|++|++. +.+.+|+.||+.+..... . .....+.++.++++++.+|+. +..++.++
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---- 147 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLPR---- 147 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCch----
Confidence 1 1246999999974 456789999997643211 0 111223456788999999997 46777664
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++ .++..++|++++|++|
T Consensus 148 -~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 148 -AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQG 225 (253)
T ss_pred -hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 59999999999999999999999999999999999999999999998765 89999999996 5788899999999999
Q ss_pred eEEEecCCCC
Q 045930 224 ETVYFGEAKS 233 (661)
Q Consensus 224 ~~v~~G~~~~ 233 (661)
++++.|++++
T Consensus 226 ~i~~~~~~~~ 235 (253)
T TIGR02323 226 RVVESGLTDQ 235 (253)
T ss_pred EEEEECCHHH
Confidence 9999987543
No 202
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=342.14 Aligned_cols=216 Identities=23% Similarity=0.352 Sum_probs=178.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|++..
T Consensus 39 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~ 112 (286)
T PRK14275 39 HVVAKNFSIYYGE------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF 112 (286)
T ss_pred EEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence 4788999988742 459999999999999999999999999999999999853 21114899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+|+. +..++.+ ..||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 184 (286)
T PRK14275 113 TDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNA-----LGLS 184 (286)
T ss_pred cchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCCh-----hhCC
Confidence 124579999999988875 99999998754321 112333456788889998874 3445544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..
T Consensus 185 gGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 68999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 263 g~~~~ 267 (286)
T PRK14275 263 APTAQ 267 (286)
T ss_pred CCHHH
Confidence 88654
No 203
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=340.09 Aligned_cols=217 Identities=26% Similarity=0.380 Sum_probs=180.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc--cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--DY 79 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--~~ 79 (661)
.|+++|+++.+++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++... ..
T Consensus 6 ~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL---ASGKISILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEhHHhhcc
Confidence 5889999998742 25699999999999999999999999999999999999887 48999999987532 12
Q ss_pred CeEEEEecCCCCC--CCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 80 GGVAYVTQENIML--GTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 80 ~~i~yv~Q~~~l~--~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
+.++|++|++.+. ...+++|++.+....... ......+.+++++++++.+||.+..|+.++ .||||||||++
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~ 152 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVF 152 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHH
Confidence 4699999997652 234789988654211000 011123335567889999999988888775 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||+++++ +|++++.|++++
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 99999999999999999999999999999999999987899999999996 5788999999877 899999998764
No 204
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.3e-39 Score=329.91 Aligned_cols=191 Identities=28% Similarity=0.363 Sum_probs=164.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... ..+...+.+.+||+|
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~-------~~~~~~~~~~~tv~e 103 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRGRVSSL-------LGLGGGFNPELTGRE 103 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEchh-------hcccccCCCCCcHHH
Confidence 36799999999999999999999999999999999999887 48999999986421 112234567899999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
|+.+..... ..+.++.+++++++++.+||++..++.++ +||||||||++||++|+.+|+++||||||+|||+
T Consensus 104 nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 104 NIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 998876432 22344556678899999999988888775 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 180 ~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 176 ~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 176 AFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999987789999999996 5788899999999999998765
No 205
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=339.06 Aligned_cols=220 Identities=23% Similarity=0.306 Sum_probs=181.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.+..
T Consensus 21 ~l~i~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 21 AMAAVNLTLGFAG------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred EEEEeeEEEEECC------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 4789999998752 56999999999999999999999999999999999998741 024899999998642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
..++.++|++|++.+++ .||+||+.+..... ...+.++.++++.++++.+||.+..++... ..++.|||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~q 170 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQ 170 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHH
Confidence 12457999999998888 79999998764322 112444555677889999999753221111 123569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 57889999999999999999998654
No 206
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-40 Score=368.41 Aligned_cols=214 Identities=21% Similarity=0.325 Sum_probs=183.8
Q ss_pred EEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------cc
Q 045930 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------DY 79 (661)
Q Consensus 6 ~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------~~ 79 (661)
+|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|++... .+
T Consensus 2 ~nl~~~~~------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 2 SNISKSFP------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALE 72 (491)
T ss_pred CceEEEeC------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHh
Confidence 57777764 256999999999999999999999999999999999999874 8999999987531 13
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++.++ +|||||||||+||+
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~ 147 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAK 147 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHH
Confidence 5699999999899999999999875421101012334455678999999999888888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..|++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999988899999999996 578899999999999999999987653
No 207
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-39 Score=322.08 Aligned_cols=188 Identities=48% Similarity=0.835 Sum_probs=162.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-cccC
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-LDYG 80 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~~~~ 80 (661)
.++++|+++.++.. +.++.+|+|+|+++++||+++|+|||||||||||++|+|+.... ..+|+|.++|++.. ..++
T Consensus 3 ~l~~~~l~~~~~~~--~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTVPVK--GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG-VITGEILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEEecCC--CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CcceEEEECCEehHHHhhh
Confidence 47899999988531 11256999999999999999999999999999999999986310 14899999998753 2245
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH
Q 045930 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 81 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
.++|++|++.+++.+||+||+.+...++ .||||||||++||++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~qrv~la~a 122 (192)
T cd03232 80 STGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRKRLTIGVE 122 (192)
T ss_pred ceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhHHHHHHHH
Confidence 7999999999999999999998753110 399999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-CeEEEec
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG-GETVYFG 229 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~-G~~v~~G 229 (661)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999877999999999975357889999999998 9999875
No 208
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=366.83 Aligned_cols=215 Identities=25% Similarity=0.403 Sum_probs=185.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP---DAGSILIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCCHH
Confidence 4789999998742 4699999999999999999999999999999999999887 48999999987531
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||.||+.+.............+.+++++++++.+||.+..++.++ +|||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv 149 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSIGQRQMV 149 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCHHHHHHH
Confidence 245799999999999999999999986421110112344556778999999999877777765 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|+++..++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999999988899999999997 578899999999999999876653
No 209
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=338.91 Aligned_cols=216 Identities=20% Similarity=0.336 Sum_probs=177.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|+||||||||+++|+|.++ +....+|+|.++|++..
T Consensus 24 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 24 VFDTQNLNLWYGE------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred EEEEeeeEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 3788999987742 469999999999999999999999999999999999986 21124899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC----CccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL----EDCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||+||+.+....+. ....+..++.+.+.++.+++ .+..++.+ +.||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-----~~LS 169 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA-----YGLS 169 (271)
T ss_pred ccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc-----ccCC
Confidence 124579999999988874 99999998754321 11222334567777887754 33344444 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.
T Consensus 170 gGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 79999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 248 g~~~~ 252 (271)
T PRK14238 248 DDTDK 252 (271)
T ss_pred CCHHH
Confidence 87543
No 210
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.7e-40 Score=336.74 Aligned_cols=212 Identities=30% Similarity=0.456 Sum_probs=168.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 1 l~i~~l~~~~~~---~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPS---RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP---TSGEILLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCC---CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC---CCCEEEECCEehhhcCHHH
Confidence 468999988752 1225699999999999999999999999999999999999887 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccccccCHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD-----VIEEAITEM--GLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.+++ .||+||+.+.... ...++..+ .+.+.++.+ ++....++.+ +.||||
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~G 143 (238)
T cd03249 75 LRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERG-----SQLSGG 143 (238)
T ss_pred HHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeeccCC-----ccCCHH
Confidence 1356999999988876 6999999875321 11121111 112223333 3443444433 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+
T Consensus 144 ~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~ 220 (238)
T cd03249 144 QKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGT 220 (238)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999997 7999999999974 564 899999999999999887
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
.++.
T Consensus 221 ~~~~ 224 (238)
T cd03249 221 HDEL 224 (238)
T ss_pred HHHH
Confidence 5543
No 211
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=339.40 Aligned_cols=214 Identities=24% Similarity=0.388 Sum_probs=178.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. ...+|+|.++|.+..
T Consensus 39 ~l~i~~l~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 39 VIEARDLNVFYGD------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred eEEEEEEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 3788999988742 46999999999999999999999999999999999998621 014899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||.||+.+....+ .... +.+++++++++.+||. +..++.+ ..||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~-----~~LS 182 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDEVKDQLDSSG-----LDLS 182 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCc-----ccCC
Confidence 124579999999988885 9999999876543 1222 3456789999999985 3445554 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE-EEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLF-LLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~-lL~~G~~v~ 227 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ .++.+++|+++ +|++|+++.
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999874 8999999996 57888999975 679999999
Q ss_pred ecCCCC
Q 045930 228 FGEAKS 233 (661)
Q Consensus 228 ~G~~~~ 233 (661)
.|++++
T Consensus 261 ~g~~~~ 266 (285)
T PRK14254 261 FDDTDK 266 (285)
T ss_pred eCCHHH
Confidence 887543
No 212
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=373.91 Aligned_cols=222 Identities=20% Similarity=0.264 Sum_probs=188.2
Q ss_pred eEEEEEEEEEeecCCc-----ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc
Q 045930 2 YLVWEEVTVVVPNFGS-----GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~ 76 (661)
.|+++||++.++.... ...+.+|+||||+|++||+++|+||||||||||+++|+|++++ .+|+|.++|++..
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p---~~G~I~~~g~~i~ 389 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES---QGGEIIFNGQRID 389 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCcEEEECCEECC
Confidence 3789999998852100 0124699999999999999999999999999999999999987 4899999998642
Q ss_pred c--------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccc
Q 045930 77 L--------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWR 145 (661)
Q Consensus 77 ~--------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~ 145 (661)
. .++.++||+|++ .+++.+||.|++.+....+. ....++.+++++++++.+||. +..++.++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~----- 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPH----- 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcc-----
Confidence 1 235799999997 58899999999998754321 112445567899999999996 56788775
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+|||||||||+||+||+.+|++|||||||+|||+.++.++++.|++++++ |.|||++|||+ +.+.++||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999875 89999999996 57889999999999999
Q ss_pred EEEecCCCCh
Q 045930 225 TVYFGEAKSA 234 (661)
Q Consensus 225 ~v~~G~~~~~ 234 (661)
+++.|+++++
T Consensus 542 iv~~g~~~~i 551 (623)
T PRK10261 542 IVEIGPRRAV 551 (623)
T ss_pred EEEecCHHHH
Confidence 9999987654
No 213
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=344.58 Aligned_cols=222 Identities=23% Similarity=0.335 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.+.. ..+.+|+|+|++|++||++||+|||||||||||++|+|..+.. ...+|+|.++|.+..
T Consensus 80 ~i~~~nls~~y~~----~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 80 VFEIRNFNFWYMN----RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred eEEEEeeEEEecC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4789999998853 2356999999999999999999999999999999999987521 124899999998753
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNE-EITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~-~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
..++.++|++|++.+++ .||+||+.|..... ..+.+ ..++.++++++.++|.+..++.++. ....|||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGq 230 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQ 230 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHH
Confidence 12467999999998885 79999999865332 12222 2345578889999885443333432 345799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++ ..+.++||+|++|++|++++.|++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 69999999996 578889999999999999999987
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
+++
T Consensus 309 ~~l 311 (329)
T PRK14257 309 KTI 311 (329)
T ss_pred HHH
Confidence 654
No 214
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-40 Score=334.69 Aligned_cols=210 Identities=29% Similarity=0.419 Sum_probs=171.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 1 i~~~~l~~~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPG----DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCC----CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCEEhhhCCHHH
Confidence 468999998753 123699999999999999999999999999999999999987 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccccccCHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD-----VIEEAITEM--GLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.+++ .||+||+.+.... ....+..+ .+++.++.+ ++++..++.+ ..||||
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~LS~G 142 (234)
T cd03251 74 LRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERG-----VKLSGG 142 (234)
T ss_pred HHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCC-----CcCCHH
Confidence 2456999999998886 6999999875321 12222111 234555555 5665555554 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.. ||++++|++|++++.|+
T Consensus 143 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~v~~l~~G~i~~~~~ 219 (234)
T cd03251 143 QRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRL-STIEN-ADRIVVLEDGKIVERGT 219 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHhh-CCEEEEecCCeEeeeCC
Confidence 99999999999999999999999999999999999999999975 89999999997 45654 99999999999998887
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
.++
T Consensus 220 ~~~ 222 (234)
T cd03251 220 HEE 222 (234)
T ss_pred HHH
Confidence 554
No 215
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=335.07 Aligned_cols=217 Identities=28% Similarity=0.402 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeeEEEECCeecc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN---VVMTGNVLLNGKKRR-- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~---~~~~G~i~~~g~~~~-- 76 (661)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+.|++.++|.+..
T Consensus 10 ~i~~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~ 83 (257)
T PRK14246 10 VFNISRLYLYIN------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83 (257)
T ss_pred heeeeeEEEecC------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC
Confidence 367889998874 256999999999999999999999999999999999998763 123355555555431
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccCH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGISG 149 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSg 149 (661)
..++.++|++|++.+++.+||+||+.+...... ...+++.+++++++++.+++.+ ..++.+ +.|||
T Consensus 84 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~ 156 (257)
T PRK14246 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPA-----SQLSG 156 (257)
T ss_pred CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCc-----ccCCH
Confidence 124579999999999999999999998754321 1234455677899999999963 345544 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ ++|||+++|++ ..+.++||++++|++|+++..|
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999965 69999999996 5788999999999999999999
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
+.++
T Consensus 235 ~~~~ 238 (257)
T PRK14246 235 SSNE 238 (257)
T ss_pred CHHH
Confidence 7653
No 216
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.2e-39 Score=403.80 Aligned_cols=222 Identities=29% Similarity=0.431 Sum_probs=198.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----L 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~ 77 (661)
.|+++||++.++. ..+.+|+|||+.+++||++||+||||||||||+|+|+|..+++ +|+|.++|++.. .
T Consensus 1937 ~L~v~nLsK~Y~~----~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1937 ILRLNELTKVYSG----TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISD 2009 (2272)
T ss_pred eEEEEEEEEEECC----CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHH
Confidence 3788999988742 1357999999999999999999999999999999999999884 899999998753 1
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||++|++.+++.+||+|++.+.++++ +.+.++.+++++++++.+||.+.+|++++ +|||||||||+|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLST 2081 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHH
Confidence 2467999999999999999999999887764 34455567788999999999999999886 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHH
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTF 237 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~ 237 (661)
|+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++|||+++|.+|++++.|++++....
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999999988899999999996 689999999999999999999999887776
Q ss_pred HH
Q 045930 238 FA 239 (661)
Q Consensus 238 f~ 239 (661)
|.
T Consensus 2161 ~g 2162 (2272)
T TIGR01257 2161 FG 2162 (2272)
T ss_pred hC
Confidence 64
No 217
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-40 Score=366.55 Aligned_cols=216 Identities=30% Similarity=0.498 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|++ +++..||+|+||+++|||++||+||||+||||+.+.|-.++.|. +|+|++||.+.+.
T Consensus 465 ~IeF~~VsFaYP~---Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 465 VIEFEDVSFAYPT---RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHK 538 (716)
T ss_pred eEEEEEeeeecCC---CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHH
Confidence 4799999999986 34678999999999999999999999999999999999999984 9999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-HH--cCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAI-TE--MGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l-~~--lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.+++||+|.|||.+|.. ||+|||.|+.. +.+.++.+..++..- ++ .++.+-.||.+|+. ..+|||||||
T Consensus 539 ~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEk-G~qLSGGQKQ 611 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEK-GSQLSGGQKQ 611 (716)
T ss_pred HHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCc-cccccchHHH
Confidence 35789999999999988 99999999854 345666554433332 11 37788899999973 3479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++|||||++||+||||||.||+||+.+...+.+.|.++.+ ++|||++.|.. ...+.+|+|+++++|++++.|.-++
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRL--STV~~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRL--STVRHADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhh--hHhhhccEEEEEcCCeEEecccHHH
Confidence 99999999999999999999999999999999999999876 49999999996 4678899999999999999997544
No 218
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-39 Score=323.57 Aligned_cols=197 Identities=26% Similarity=0.359 Sum_probs=171.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACERDE------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEECC------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHh
Confidence 688999998742 46999999999999999999999999999999999999874 8999999987431 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||.||+.+....+ .. +.+++++++++.+||.+..|+.++ .||||||||++||
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la 141 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPVR-----QLSAGQQRRVALA 141 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHHHH
Confidence 457999999999999999999999876432 11 224568899999999888887764 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.+.-+|++++
T Consensus 142 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 142 RLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 999999999999999999999999999999999987789999999997 4676766777766
No 219
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=375.26 Aligned_cols=220 Identities=25% Similarity=0.299 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec------
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR------ 75 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~------ 75 (661)
.|+++|+++.+... +..+++|+||||++++||++||+||||||||||+++|+|++++. +|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~--~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 12 VLAVENLNIAFMQE--QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred eEEEeceEEEecCC--CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEecccccc
Confidence 47899999988531 11246999999999999999999999999999999999999874 89999988521
Q ss_pred -------c------cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc---cccc
Q 045930 76 -------R------LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED---CADR 137 (661)
Q Consensus 76 -------~------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~ 137 (661)
. ...+.+|||+|++ .+++.+||.||+.+..+.+. ..+..+.+++++++++.+||.+ ..++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 164 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSR 164 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence 0 0124699999997 68889999999999865421 2345566778999999999963 4666
Q ss_pred cccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCe
Q 045930 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 138 ~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
.++ +|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++++++ |+|||++||++ .++.++||+
T Consensus 165 ~~~-----~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adr 238 (623)
T PRK10261 165 YPH-----QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADR 238 (623)
T ss_pred CCc-----cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCE
Confidence 664 69999999999999999999999999999999999999999999999865 99999999996 578899999
Q ss_pred EEEEeCCeEEEecCCCCh
Q 045930 217 LFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 217 v~lL~~G~~v~~G~~~~~ 234 (661)
|++|++|++++.|++++.
T Consensus 239 i~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQI 256 (623)
T ss_pred EEEeeCCeecccCCHHHh
Confidence 999999999998887543
No 220
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-39 Score=332.21 Aligned_cols=214 Identities=23% Similarity=0.294 Sum_probs=184.1
Q ss_pred CeEEEEEEEEEeecCC--------------cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee
Q 045930 1 MYLVWEEVTVVVPNFG--------------SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG 66 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~--------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G 66 (661)
+++.++|++.++..+. +..++.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 3688999998887632 113457999999999999999999999999999999999999874 89
Q ss_pred EEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccc
Q 045930 67 NVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146 (661)
Q Consensus 67 ~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 146 (661)
+|.++|. ++++.|+..+.+.+||.||+.+..... ..+.++..+.++++++.++|.+..++.++ .
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVK-----K 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----c
Confidence 9999985 456778877788899999998765432 23445556677888999999888887764 5
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999996 5788999999999999999
Q ss_pred EecCCCCh
Q 045930 227 YFGEAKSA 234 (661)
Q Consensus 227 ~~G~~~~~ 234 (661)
..|+.++.
T Consensus 223 ~~g~~~~~ 230 (264)
T PRK13546 223 DYGELDDV 230 (264)
T ss_pred EeCCHHHH
Confidence 99886554
No 221
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.3e-39 Score=328.61 Aligned_cols=208 Identities=30% Similarity=0.453 Sum_probs=172.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPN----QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP---TSGSVLLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCC----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCeEEECCEEhHHCCHH
Confidence 4788999988742 125699999999999999999999999999999999999877 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG------NWHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSgG 150 (661)
.++.++|++|++.+++ .||.||+.+... ... .+.+.++++.+++.+..++.+. ......||||
T Consensus 75 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG 144 (220)
T cd03245 75 DLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGG 144 (220)
T ss_pred HHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHH
Confidence 2357999999998887 699999976421 111 2346678888899877776542 1123579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++++|++|++++.|
T Consensus 145 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 145 QRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999999765 89999999974 44 799999999999998754
No 222
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-39 Score=331.69 Aligned_cols=217 Identities=22% Similarity=0.328 Sum_probs=180.8
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeeccc-
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRL- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~~- 77 (661)
+.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.+||.+...
T Consensus 2 ~~l~~~~v~~~~~------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 2 YRIEVENLNTYFD------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred cEEEEEeEEEEeC------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 3578999998874 2569999999999999999999999999999999999864 211148999999987421
Q ss_pred ------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCcccccc
Q 045930 78 ------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC----ADRLIGNWHWRGI 147 (661)
Q Consensus 78 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~----~d~~vg~~~~~~L 147 (661)
.++.++|++|++.+++. |+.||+.+..... .....+..++++.++++.+||.+. .++.+ ..|
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~L 147 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLDKSA-----LGL 147 (250)
T ss_pred cccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCc-----ccC
Confidence 14579999999988885 9999998765332 112234456778899999998543 34433 569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.+.+|++++|++|++++
T Consensus 148 S~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999965 79999999997 57899999999999999999
Q ss_pred ecCCCC
Q 045930 228 FGEAKS 233 (661)
Q Consensus 228 ~G~~~~ 233 (661)
.|++++
T Consensus 226 ~g~~~~ 231 (250)
T PRK14266 226 SGLTDQ 231 (250)
T ss_pred eCCHHH
Confidence 988654
No 223
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=357.20 Aligned_cols=221 Identities=25% Similarity=0.342 Sum_probs=190.8
Q ss_pred EEEEEEEEEeecCC-----cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec--
Q 045930 3 LVWEEVTVVVPNFG-----SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-- 75 (661)
Q Consensus 3 l~~~~l~~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-- 75 (661)
|+.+||+..+...+ ......+++||||++++||++||+|+||||||||.++|+|+.+|. +|+|.++|.+.
T Consensus 281 l~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~ 357 (539)
T COG1123 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDL 357 (539)
T ss_pred eEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCccccc
Confidence 67899999887522 122357899999999999999999999999999999999999884 89999999762
Q ss_pred -----ccccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccccc
Q 045930 76 -----RLDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGI 147 (661)
Q Consensus 76 -----~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~L 147 (661)
...++++-+|+||+ .+.|.+||++++......+.+ ....+.++++.++++.+||.. ..++++ ++|
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----~el 430 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYP-----HEL 430 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCc-----hhc
Confidence 11245678888886 689999999999998776533 235677788999999999985 577766 569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|||||||++|||||+.+|++|++|||||.||+..+.++++.|+++.++ |.|.|+++||. +.+..+||||.+|.+|++|
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999886 99999999996 6899999999999999999
Q ss_pred EecCCCCh
Q 045930 227 YFGEAKSA 234 (661)
Q Consensus 227 ~~G~~~~~ 234 (661)
+.|+.+++
T Consensus 510 E~G~~~~v 517 (539)
T COG1123 510 EEGPTEKV 517 (539)
T ss_pred EeCCHHHH
Confidence 99976543
No 224
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.8e-39 Score=329.79 Aligned_cols=218 Identities=29% Similarity=0.374 Sum_probs=178.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeeccc---
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~~--- 77 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|.+...
T Consensus 2 i~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSVED------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEeCC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccCCH
Confidence 789999998752 46999999999999999999999999999999999995 45 48999999976421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHh-cCC--CC-CCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAH-LRL--PS-NMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~--~~-~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++.+|+.+++.+... ++. .. .....+..++++++++.+++. +..++.+. +.|||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~ 148 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSG 148 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCH
Confidence 12469999999998888888877654321 110 00 012223456788899999995 45555542 25999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~~ 228 (661)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++ ..+... +|++++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeEEEe
Confidence 999999999999999999999999999999999999999999987789999999996 456666 899999999999999
Q ss_pred cCCCCh
Q 045930 229 GEAKSA 234 (661)
Q Consensus 229 G~~~~~ 234 (661)
|+.+.+
T Consensus 228 g~~~~~ 233 (248)
T PRK09580 228 GDFTLV 233 (248)
T ss_pred CCHHHH
Confidence 987643
No 225
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-39 Score=332.98 Aligned_cols=217 Identities=23% Similarity=0.284 Sum_probs=178.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~---- 76 (661)
+..+++++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++..
T Consensus 9 ~~~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 82 (261)
T PRK14263 9 MDCKLDKIFYG------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82 (261)
T ss_pred EEEEeEEEEeC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc
Confidence 56677777653 256999999999999999999999999999999999998641 114899999998642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
..++.++|++|++.++ .+||.||+.+....+. . ..+..++++++++.++|.+..+...+ ...+.|||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~q 156 (261)
T PRK14263 83 DPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQ 156 (261)
T ss_pred chHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHH
Confidence 1245699999999887 5899999998765431 1 23345678899999998653322221 234579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe--------CCeE
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS--------GGET 225 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~--------~G~~ 225 (661)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceE
Confidence 99999999999999999999999999999999999999964 79999999997 57889999999996 8999
Q ss_pred EEecCCCC
Q 045930 226 VYFGEAKS 233 (661)
Q Consensus 226 v~~G~~~~ 233 (661)
++.|+.++
T Consensus 235 ~~~g~~~~ 242 (261)
T PRK14263 235 VEMGPTAQ 242 (261)
T ss_pred EEeCCHHH
Confidence 99998653
No 226
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.7e-39 Score=324.42 Aligned_cols=200 Identities=24% Similarity=0.332 Sum_probs=174.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc--cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--DY 79 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--~~ 79 (661)
.|+++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|++... .+
T Consensus 11 ~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 11 LLAAHALAFSRN------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRS 81 (214)
T ss_pred eEEEeeEEEecC------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhh
Confidence 478899998764 246999999999999999999999999999999999999874 8999999987532 23
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+|++||+.+....+ .. ..++.++++++.++|.+..++.++ .||||||||++||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~lar 150 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKKRLALAR 150 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCChh-----hCCHHHHHHHHHHH
Confidence 46999999999999999999998875432 11 123457788999999888888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
+++.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999988899999999997 589999999999864
No 227
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-40 Score=332.02 Aligned_cols=210 Identities=26% Similarity=0.392 Sum_probs=168.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP---QKGQILIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEeHHHcCHH
Confidence 4789999998742 24599999999999999999999999999999999999987 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI------GNWHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~v------g~~~~~~LSgG 150 (661)
.++.++|++|++.+++. ||+||+.+.... ... ..+++.++.+++.+..++.. -+..++.||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 143 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQG 143 (229)
T ss_pred HHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHH
Confidence 24569999999988876 999999875311 111 22344444444443333221 01123579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+||++|+.+|++++|||||+|||+.++..+++.|++++ +|+|||++||++. ++ ..||++++|++|++++.|+
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~ 220 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGT 220 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999996 4899999999974 55 4599999999999998887
Q ss_pred CC
Q 045930 231 AK 232 (661)
Q Consensus 231 ~~ 232 (661)
.+
T Consensus 221 ~~ 222 (229)
T cd03254 221 HD 222 (229)
T ss_pred HH
Confidence 54
No 228
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.4e-39 Score=333.11 Aligned_cols=197 Identities=28% Similarity=0.442 Sum_probs=171.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCCCCCCCCCH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTV 97 (661)
+|+|+|+++++||+++|+||||||||||+++|+|+.+. +|+|.++|++... .++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999742 7999999986431 13458999999888888999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhh-------CCCEEEE
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT-------RPQLLFL 170 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~-------~P~lllL 170 (661)
+||+.+.... ....++..++++++++.+||.+..++.++ .||||||||++||++|+. +|++|+|
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999876321 12234446678999999999888888765 599999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+.++
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 219 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDE 219 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999987899999999996 57889999999999999999987543
No 229
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.7e-39 Score=366.49 Aligned_cols=216 Identities=23% Similarity=0.310 Sum_probs=183.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECC--------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNG-------- 72 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g-------- 72 (661)
|+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++ .+|+|.++|
T Consensus 1 l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKFD------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEEC------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEeccccccccc
Confidence 46889998874 256999999999999999999999999999999999996 45 489999872
Q ss_pred ---------------eec--------c-------cccCeEEEEecC-CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q 045930 73 ---------------KKR--------R-------LDYGGVAYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121 (661)
Q Consensus 73 ---------------~~~--------~-------~~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~ 121 (661)
.+. . ..++.++|++|+ +.+++.+||+||+.+..... ..+.++.+++
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~ 148 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGR 148 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 111 0 113569999997 67888999999999875432 2334555678
Q ss_pred HHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Q 045930 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTII 200 (661)
Q Consensus 122 v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi 200 (661)
++++++.+||++..++.++ +|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||
T Consensus 149 ~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi 223 (520)
T TIGR03269 149 AVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMV 223 (520)
T ss_pred HHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 9999999999988888775 59999999999999999999999999999999999999999999999764 99999
Q ss_pred EEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 201 SSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 201 ~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
+++|++ ..+.++||++++|++|++++.|++++..+
T Consensus 224 ivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 224 LTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred EEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 999997 57888999999999999999888765543
No 230
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1e-39 Score=375.28 Aligned_cols=218 Identities=31% Similarity=0.452 Sum_probs=182.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 471 ~I~~~nvsf~y~~----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 471 EIEFENVSFRYGP----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLA 543 (709)
T ss_pred eEEEEEEEEEeCC----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHH
Confidence 5799999999864 2246999999999999999999999999999999999999984 9999999998532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHH--cCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++++|||+||+.+|.. |++||+.++. | ..+.++..+.+... .++ ..+..-.||.+|+ +..+|||||||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p-~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E-~G~~LSGGQrQ 616 (709)
T COG2274 544 SLRRQVGYVLQDPFLFSG-SIRENIALGN----P-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE-GGANLSGGQRQ 616 (709)
T ss_pred HHHhheeEEcccchhhcC-cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHHhccccccccccc-CCCCCCHHHHH
Confidence 36889999999999877 9999999763 2 23434433322211 111 2456677888886 34679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++|||||+++|+||+||||||+||+.+...+.+.|.++.+ |+|+|+++|.+ ...+.||+|++|++|+++.+|+.++
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccc--hHhhhccEEEEccCCceeccCCHHH
Confidence 99999999999999999999999999999999999999875 79999999997 4788999999999999999999876
Q ss_pred hhH
Q 045930 234 APT 236 (661)
Q Consensus 234 ~~~ 236 (661)
..+
T Consensus 694 ll~ 696 (709)
T COG2274 694 LLA 696 (709)
T ss_pred HHH
Confidence 554
No 231
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6e-39 Score=324.84 Aligned_cols=207 Identities=24% Similarity=0.331 Sum_probs=171.9
Q ss_pred EEEEEEEEEeecCCccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEEC--Ce--ecc-
Q 045930 3 LVWEEVTVVVPNFGSGP-TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLN--GK--KRR- 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~--g~--~~~- 76 (661)
++++|+++.++....+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++ |. +..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP---DSGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEEEecCCCccchhh
Confidence 68899999885321111 24699999999999999999999999999999999999887 48999998 42 211
Q ss_pred --------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccccc
Q 045930 77 --------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGI 147 (661)
Q Consensus 77 --------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~L 147 (661)
..++.++|++|++.+++.+||+|++.+..... ....++..+++.++++.+||.+ ..++.+ ++|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP-----ATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc-----ccC
Confidence 01246999999999999999999998865432 2334445667889999999976 346655 469
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999999999987799999999995 56778999998763
No 232
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2e-39 Score=372.86 Aligned_cols=210 Identities=28% Similarity=0.447 Sum_probs=175.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+.. ++++|+|+|++++|||.+||+||||||||||+++|+|.+ | .+|+|.+||.+.+.
T Consensus 349 ~i~~~~vsf~~~~-----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p---~~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 349 TIEAEDLEILSPD-----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P---YQGSLKINGIELRELDPE 419 (588)
T ss_pred eEEEEeeEEeccC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C---CCcEEEECCEecccCCHH
Confidence 4789999875532 356999999999999999999999999999999999999 6 38999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++|||.++. | +.++++ ++++++..++ .+-.||.+|+. ...|||
T Consensus 420 ~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSG 488 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSV 488 (588)
T ss_pred HHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhcccccccccccC-CCCCCH
Confidence 25689999999999987 9999999862 1 344444 3444444443 44568888864 356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|++ +..+.+|+|++|++|++++.|
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999999999986 479999999997 356779999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 566 ~~~eL 570 (588)
T PRK11174 566 DYAEL 570 (588)
T ss_pred CHHHH
Confidence 85543
No 233
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-39 Score=335.30 Aligned_cols=215 Identities=24% Similarity=0.300 Sum_probs=177.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++..
T Consensus 20 ~l~~~nl~~~~~~------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 20 VFEVEGVKVFYGG------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred eEEEeeEEEEeCC------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 4788999988742 46999999999999999999999999999999999997531 113799999997642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||.||+.+....+ ... .+.++.+++.++.+++. +..++.+ ..||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 163 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKG-----TALS 163 (274)
T ss_pred chhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcCCc-----ccCC
Confidence 124579999999988875 9999998865432 111 12334567778888874 3344444 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-------
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS------- 221 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~------- 221 (661)
|||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999975 68999999997 57889999999998
Q ss_pred --CCeEEEecCCCCh
Q 045930 222 --GGETVYFGEAKSA 234 (661)
Q Consensus 222 --~G~~v~~G~~~~~ 234 (661)
+|++++.|++++.
T Consensus 242 ~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 242 KRRGKLVEFSPTEQM 256 (274)
T ss_pred ccCceEEEeCCHHHH
Confidence 8999999987654
No 234
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-39 Score=354.32 Aligned_cols=210 Identities=30% Similarity=0.471 Sum_probs=180.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----L 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~ 77 (661)
+..+|+++.+++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.++ .+|+|.+||.+.. .
T Consensus 321 i~~~~l~~~y~~-----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 321 ISLENLSFRYPD-----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred eeecceEEecCC-----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCccccccCHHH
Confidence 445688888764 34799999999999999999999999999999999999998 4999999998753 2
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCccccccCHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED------CADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~------~~d~~vg~~~~~~LSgGe 151 (661)
.+++++||+|++.+++. |++||+.++.. +.++ +.+.+++++.||.+ -.|+.+|+ ..++|||||
T Consensus 393 ~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ 461 (559)
T COG4988 393 WRKQISWVSQNPYLFAG-TIRENILLARP-----DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQ 461 (559)
T ss_pred HHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHH
Confidence 36889999999999987 99999998621 2333 34666777776654 45677775 447899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
+|||++||||+.+++++++||||++||.++...|++.|.+++++ +|||++||++ ....-+|+|++|++|++++.|..
T Consensus 462 ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCH
Confidence 99999999999999999999999999999999999999999985 9999999996 46677999999999999999987
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
++.
T Consensus 539 ~~L 541 (559)
T COG4988 539 EEL 541 (559)
T ss_pred HHH
Confidence 765
No 235
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.6e-39 Score=321.34 Aligned_cols=194 Identities=30% Similarity=0.392 Sum_probs=170.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
|+++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +|+|.++|.+... .
T Consensus 1 l~i~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERD------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeC------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHh
Confidence 46899998874 256999999999999999999999999999999999999874 8999999987421 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+.... . .+++++++++.+||.+..++.++ .||||||||++||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 137 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVA-----QLSAGQQRRVALA 137 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchh-----hCCHHHHHHHHHH
Confidence 45799999999999999999999875321 1 23567899999999988887764 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++ .++...+|+++++
T Consensus 138 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 138 RLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc-hhhhhccceeEec
Confidence 999999999999999999999999999999999988899999999997 4688899999887
No 236
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.6e-39 Score=326.94 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=172.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 7 ~i~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 7 LLQLQNVGYLAG------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDISTLKPE 77 (225)
T ss_pred eEEEeccEEeeC------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEcCcCCHH
Confidence 478999998874 25699999999999999999999999999999999999877 48999999986431
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++. ||+||+.+....+. .. ..+++++++++.+|+. ...++.++ .||||||||+
T Consensus 78 ~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrv 146 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKNIA-----ELSGGEKQRI 146 (225)
T ss_pred HHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCCcc-----cCCHHHHHHH
Confidence 23579999999888875 99999988654321 11 1235678899999996 46677664 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEecC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS-GGETVYFGE 230 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~-~G~~v~~G~ 230 (661)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++ +++ ..||++++|+ ++..+..|.
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999999999999999875 89999999997 455 4699999995 554555554
No 237
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-39 Score=334.01 Aligned_cols=215 Identities=23% Similarity=0.322 Sum_probs=177.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG--NVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++..
T Consensus 10 ~l~i~~v~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 10 VLRTENLNVYYGS------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred EEEEeeeEEEECC------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 4789999988742 4699999999999999999999999999999999998752 1114899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||.||+.+....+ ... .+.+++++++++.+++.+ ..++.+ +.||
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 153 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSG-----LSLS 153 (264)
T ss_pred cChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCc-----ccCC
Confidence 114569999999988874 9999998875432 111 233456777888888743 334443 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-------
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS------- 221 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~------- 221 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+
T Consensus 154 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999976 58999999996 58999999999998
Q ss_pred --CCeEEEecCCCCh
Q 045930 222 --GGETVYFGEAKSA 234 (661)
Q Consensus 222 --~G~~v~~G~~~~~ 234 (661)
+|++++.|++++.
T Consensus 232 ~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 232 GRYGYLVEFDRTEKI 246 (264)
T ss_pred ccCceEEEeCCHHHH
Confidence 7999999986543
No 238
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.2e-39 Score=364.88 Aligned_cols=223 Identities=25% Similarity=0.362 Sum_probs=186.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++. .+..+.+|+|+||++++||++||+|||||||||||++|+|.+++. ...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~--~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQ--QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEecC--CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 3789999998852 111357999999999999999999999999999999999998751 1248999999986421
Q ss_pred -------ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccc
Q 045930 78 -------DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED---CADRLIGNWHWR 145 (661)
Q Consensus 78 -------~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~ 145 (661)
.++.+||++|++. +.+.+||+|++.+..... ...+..+.+++++++++.+||.+ ..|+.++
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~----- 155 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDYPH----- 155 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCc-----
Confidence 1246999999974 677889999988654321 12345556778999999999976 3577664
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ ..+..+||+|++|++|+
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~ 234 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGR 234 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999876 89999999997 57888999999999999
Q ss_pred EEEecCCCCh
Q 045930 225 TVYFGEAKSA 234 (661)
Q Consensus 225 ~v~~G~~~~~ 234 (661)
+++.|++++.
T Consensus 235 i~~~g~~~~~ 244 (529)
T PRK15134 235 CVEQNRAATL 244 (529)
T ss_pred EEEeCCHHHH
Confidence 9999986543
No 239
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-39 Score=313.34 Aligned_cols=169 Identities=31% Similarity=0.515 Sum_probs=153.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----LD 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~~ 78 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++.. ..
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccchHhh
Confidence 468899988742 4699999999999999999999999999999999999887 4899999998643 12
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||.||+. ||||||||++||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~la 107 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALA 107 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHH
Confidence 457999999999999999999873 899999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.+.+|++++|++|++
T Consensus 108 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 108 QALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999999999999988899999999997 578889999999999974
No 240
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.8e-39 Score=365.34 Aligned_cols=219 Identities=21% Similarity=0.312 Sum_probs=183.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEEC-Cee---cc-
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLN-GKK---RR- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~-g~~---~~- 76 (661)
.|+++|+++.++.. .+..+.+|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|.++ |.+ ..
T Consensus 279 ~l~~~~l~~~~~~~-~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 279 IIKVRNVSKRYISV-DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP---TSGEVNVRVGDEWVDMTK 354 (520)
T ss_pred eEEEeccEEEeccC-CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEEecCCccccccc
Confidence 37899999987421 11235699999999999999999999999999999999999987 48999996 531 11
Q ss_pred -------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCccc
Q 045930 77 -------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-----CADRLIGNWHW 144 (661)
Q Consensus 77 -------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~d~~vg~~~~ 144 (661)
..++.++|++|++.+++.+||.||+.+...+. ...++.+++++++++.+||.+ ..++.++
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~---- 426 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPD---- 426 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChh----
Confidence 11346999999998999999999998764332 223334567889999999975 4567664
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||+ .++.++||++++|++|
T Consensus 427 -~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G 504 (520)
T TIGR03269 427 -ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDG 504 (520)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999875 89999999997 5788999999999999
Q ss_pred eEEEecCCCCh
Q 045930 224 ETVYFGEAKSA 234 (661)
Q Consensus 224 ~~v~~G~~~~~ 234 (661)
++++.|+++++
T Consensus 505 ~i~~~g~~~~~ 515 (520)
T TIGR03269 505 KIVKIGDPEEI 515 (520)
T ss_pred EEEEECCHHHH
Confidence 99999876543
No 241
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.7e-39 Score=378.05 Aligned_cols=209 Identities=29% Similarity=0.387 Sum_probs=178.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|. +|+|.+||.+.+.
T Consensus 451 ~I~~~nvsf~Y~~----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 451 AIEVDRVTFRYRP----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQ 523 (686)
T ss_pred eEEEEEEEEEcCC----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHH
Confidence 4789999999853 2357999999999999999999999999999999999999884 9999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.+|||+||+.+|+. |++||+.++. | .+. +++.++++..|+.+ -.||.+|+. ...|||
T Consensus 524 ~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~--~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSG 591 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSG-SIFENIAGGA----P--LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSG 591 (686)
T ss_pred HHHhccEEEccCCccCcc-cHHHHHhcCC----C--CCH----HHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCH
Confidence 25789999999999876 9999998752 1 233 34566666666654 457777754 367999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+||||||+||+.+...+.+.|+++ ++|+|+++|++ +..+.+|+|++|++|++++.|
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999886 58999999997 356779999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 667 ~~~~L 671 (686)
T TIGR03797 667 TYDEL 671 (686)
T ss_pred CHHHH
Confidence 86654
No 242
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-37 Score=363.54 Aligned_cols=219 Identities=32% Similarity=0.492 Sum_probs=184.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+.++|++ +++.+||+|+|+.+++||.+||+|||||||||++++|.+.+.|. +|+|.+||.+.+.
T Consensus 350 ~ief~nV~FsYPs---Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPS---RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLK 423 (1228)
T ss_pred ceEEEEEEecCCC---CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchH
Confidence 4799999999985 34568999999999999999999999999999999999999984 9999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-H--HcCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAI-T--EMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l-~--~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.+.+||.|.|+|.+|.. |++||+.|+- .+.+.++..+..+..- . ...|.+-.||.+|+..+ +|||||||
T Consensus 424 ~lr~~iglV~QePvlF~~-tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qLSGGQKQ 496 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPVLFAT-TIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV-QLSGGQKQ 496 (1228)
T ss_pred HHHhhcCeeeechhhhcc-cHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC-CCChHHHH
Confidence 35789999999988765 9999999862 2345555444332221 1 13567788999998444 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++|||||+++|+|||||||||+||+.+...+.+.|.++. +|+|.|+++|+. +.+.+ +|+|++|++|++|+.|+.+|
T Consensus 497 RIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRL-StIrn-aD~I~v~~~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 497 RIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRL-STIRN-ADKIAVMEEGKIVEQGTHDE 573 (1228)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeeh-hhhhc-cCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999998875 489999999996 45665 99999999999999999887
Q ss_pred hhH
Q 045930 234 APT 236 (661)
Q Consensus 234 ~~~ 236 (661)
...
T Consensus 574 Li~ 576 (1228)
T KOG0055|consen 574 LIA 576 (1228)
T ss_pred HHh
Confidence 654
No 243
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.9e-39 Score=365.89 Aligned_cols=220 Identities=25% Similarity=0.355 Sum_probs=184.4
Q ss_pred EEEEEEEEEeecCCc-----ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc
Q 045930 3 LVWEEVTVVVPNFGS-----GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~ 77 (661)
|+++|+++.++.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++ .+|+|.++|++...
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~----~~G~i~~~g~~i~~ 351 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN----SQGEIWFDGQPLHN 351 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC----CCcEEEECCEEccc
Confidence 678999988752100 013569999999999999999999999999999999999984 28999999976421
Q ss_pred --------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccc
Q 045930 78 --------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRG 146 (661)
Q Consensus 78 --------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~ 146 (661)
.++.++|++|++ .+++.+||+||+.+....+. ...+..+.+++++++++.+||. +..++.++ .
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 425 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYPA-----E 425 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCCc-----c
Confidence 135699999996 47888999999998754321 1123444567789999999997 46787775 5
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++.++||++++|++|++
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGEV 504 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 89999999996 578899999999999999
Q ss_pred EEecCCCC
Q 045930 226 VYFGEAKS 233 (661)
Q Consensus 226 v~~G~~~~ 233 (661)
+..|++++
T Consensus 505 ~~~~~~~~ 512 (529)
T PRK15134 505 VEQGDCER 512 (529)
T ss_pred EEEcCHHH
Confidence 99987654
No 244
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-39 Score=363.21 Aligned_cols=221 Identities=23% Similarity=0.400 Sum_probs=183.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. +.++.+|+|+|+++++||+++|+||||||||||+|+|+|++++. .+|+|.++|++...
T Consensus 260 l~~~~l~~~~~~---~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 260 LEVRNLTAWDPV---NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR--WEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred EEEecCcccccc---ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCcEEEECCEECCCCCHHH
Confidence 678888876531 11356999999999999999999999999999999999998731 38999999986421
Q ss_pred -ccCeEEEEecCC---CCCCCCCHHHHHHHHHhcCCCC-C-CCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHH
Q 045930 78 -DYGGVAYVTQEN---IMLGTLTVRETIAYSAHLRLPS-N-MNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~-~-~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++ .+++.+||.||+.+........ . ...++.+++++++++.+||. +..|+.++ .||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 409 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGG 409 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHH
Confidence 134699999985 4788999999998753211100 0 12334456789999999996 57788775 59999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+ +++.++||++++|++|+++..|+
T Consensus 410 ~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 410 NQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999988899999999996 57899999999999999999998
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
+++.
T Consensus 489 ~~~~ 492 (506)
T PRK13549 489 NHNL 492 (506)
T ss_pred cccC
Confidence 7653
No 245
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.8e-39 Score=320.83 Aligned_cols=198 Identities=29% Similarity=0.403 Sum_probs=170.4
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc--c
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--D 78 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--~ 78 (661)
|.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .
T Consensus 1 m~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 1 MMLEGEDLACVRGG------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDV 71 (207)
T ss_pred CEEEEEeEEEEECC------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeCcchhh
Confidence 56899999998742 4699999999999999999999999999999999999887 48999999986432 3
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+....+ ... .++++++++.+||.+..++.++ .||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPFG-----YLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCChh-----hcCHHHHHHHHHH
Confidence 456899999998889999999998765432 111 2357899999999887777765 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.. |+++.+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 999999999999999999999999999999999988899999999997 45655 88887743
No 246
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=372.20 Aligned_cols=213 Identities=28% Similarity=0.381 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+|.+||.+.+.
T Consensus 341 ~i~~~~vsf~y~~----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 341 DIEFRNVTFTYPG----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLA 413 (582)
T ss_pred eEEEEEEEEecCC----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHH
Confidence 4899999998853 2357999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++||+.++. +...+++ +++++++..|+ .+-.||.+|+. .+.|||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSG 483 (582)
T PRK11176 414 SLRNQVALVSQNVHLFND-TIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSG 483 (582)
T ss_pred HHHhhceEEccCceeecc-hHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCH
Confidence 25679999999999976 9999998752 1123333 35555555554 34468888864 367999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|++ +..+.||+|++|++|++++.|
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL--STIEKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999854 69999999997 467789999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 561 ~~~~l 565 (582)
T PRK11176 561 THAEL 565 (582)
T ss_pred CHHHH
Confidence 86543
No 247
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=331.07 Aligned_cols=215 Identities=23% Similarity=0.338 Sum_probs=178.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++.- ..+|+|.++|.+..
T Consensus 16 ~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 16 KSEVNKLNFYYGG------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred eEEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 4788999998752 469999999999999999999999999999999999986410 14899999986531
Q ss_pred ------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHcCCC----ccccccccCcccc
Q 045930 77 ------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMN-NEEITDVIEEAITEMGLE----DCADRLIGNWHWR 145 (661)
Q Consensus 77 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~ 145 (661)
..++.++|++|++.+++. ||+||+.+..... ... +...+++++++++.+++. +..++.+ .
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~ 160 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDLA-----F 160 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCc-----c
Confidence 124569999999988886 9999998875432 112 223346678888888874 3344444 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++
T Consensus 161 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i 238 (265)
T PRK14252 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGEL 238 (265)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 6999999999999999999999999999999999999999999999976 68999999996 578899999999999999
Q ss_pred EEecCCCC
Q 045930 226 VYFGEAKS 233 (661)
Q Consensus 226 v~~G~~~~ 233 (661)
+..|+.++
T Consensus 239 ~~~g~~~~ 246 (265)
T PRK14252 239 IEFGATDT 246 (265)
T ss_pred EEeCCHHH
Confidence 99987543
No 248
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.3e-39 Score=396.25 Aligned_cols=220 Identities=28% Similarity=0.381 Sum_probs=195.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++||++.+++ .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|++...
T Consensus 928 ~L~I~nLsK~y~~----~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 928 GVCVKNLVKIFEP----SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred eEEEEeEEEEecC----CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHH
Confidence 4788999988742 1367999999999999999999999999999999999999884 8999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||++|++.+++.+||+|++.+.++++ +.+.++.+++++++++.+||++.+|+.++ +|||||||||+|
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGMQRKLSV 1072 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHH
Confidence 2467999999999999999999999987764 23445566789999999999999998875 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHH
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTF 237 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~ 237 (661)
|+||+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++ +++..++||+++|++|+++..|++++.++.
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999995 599999999996 688899999999999999999998777654
Q ss_pred H
Q 045930 238 F 238 (661)
Q Consensus 238 f 238 (661)
|
T Consensus 1151 ~ 1151 (2272)
T TIGR01257 1151 F 1151 (2272)
T ss_pred c
Confidence 4
No 249
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=7.8e-39 Score=329.71 Aligned_cols=200 Identities=29% Similarity=0.444 Sum_probs=172.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|. ..
T Consensus 4 ~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~~~------~~ 68 (251)
T PRK09544 4 LVSLENVSVSFGQ------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVIKRNGK------LR 68 (251)
T ss_pred EEEEeceEEEECC------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCc------cC
Confidence 4789999998752 4699999999999999999999999999999999999987 4899999872 35
Q ss_pred EEEEecCCCCCCC--CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGT--LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 82 i~yv~Q~~~l~~~--lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
++|++|++.+++. .|+.+++.+.. ... .+++.++++.+||.+..++.++ .||||||||++||+
T Consensus 69 i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~lar 133 (251)
T PRK09544 69 IGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQ-----KLSGGETQRVLLAR 133 (251)
T ss_pred EEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChh-----hCCHHHHHHHHHHH
Confidence 9999999877775 47887765321 111 2457889999999988888764 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+.||++++|++ +++..|++++
T Consensus 134 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~ 206 (251)
T PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEV 206 (251)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHH
Confidence 999999999999999999999999999999999876 89999999997 578899999999965 7888887654
No 250
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-39 Score=329.58 Aligned_cols=204 Identities=30% Similarity=0.442 Sum_probs=165.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDP-----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEhhhCCHHH
Confidence 468999988742 24699999999999999999999999999999999999887 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-----------CccccccccCccccc
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-----------EDCADRLIGNWHWRG 146 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~d~~vg~~~~~~ 146 (661)
.++.++|++|++.+++ .||+||+.+... ..+..+ +.+.++..++ +...++. ++.
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~~~-----~~~ 137 (236)
T cd03253 73 LRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVGER-----GLK 137 (236)
T ss_pred HHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhhcC-----CCc
Confidence 2356999999998886 699999987532 112221 2233333333 3333333 357
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++. ++. .||++++|++|+++
T Consensus 138 LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~ 214 (236)
T cd03253 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIV 214 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987 999999999974 554 49999999999999
Q ss_pred EecCCC
Q 045930 227 YFGEAK 232 (661)
Q Consensus 227 ~~G~~~ 232 (661)
+.|+.+
T Consensus 215 ~~~~~~ 220 (236)
T cd03253 215 ERGTHE 220 (236)
T ss_pred eeCCHH
Confidence 887754
No 251
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.7e-39 Score=322.87 Aligned_cols=208 Identities=20% Similarity=0.337 Sum_probs=169.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++|+++.++. ..+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~l~~~~l~~~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRP----NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCC----CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhHhCCHH
Confidence 4789999998752 124699999999999999999999999999999999999887 4899999998642
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCccccccCHH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI------GNWHWRGISGG 150 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~v------g~~~~~~LSgG 150 (661)
..++.++|++|++.+++ .||+||+.+.. ... .+++.+.++.+++.+..++.. -+..++.||||
T Consensus 75 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G 143 (221)
T cd03244 75 DLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVG 143 (221)
T ss_pred HHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHH
Confidence 12467999999998776 59999986431 111 234566677777765443210 01234679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++. .||++++|++|++++.|+
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999999865 68999999997 4555 499999999999998875
No 252
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.4e-38 Score=317.02 Aligned_cols=187 Identities=27% Similarity=0.387 Sum_probs=159.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeeccc---
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~~--- 77 (661)
|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVG------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeC------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCCH
Confidence 46899998874 246999999999999999999999999999999999984 45 48999999987531
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.+..++|++|++.+++.+|+++++. .. .+.||||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G~~qr 112 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGGEKKR 112 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHHHHHH
Confidence 1245999999998888888887760 01 13599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh-hcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFA-LFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~-~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+ ++|++++|++|++++.|+.+
T Consensus 113 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~- 190 (200)
T cd03217 113 NEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE- 190 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-
Confidence 99999999999999999999999999999999999999877899999999974 6666 79999999999999999443
Q ss_pred hhHHHH
Q 045930 234 APTFFA 239 (661)
Q Consensus 234 ~~~~f~ 239 (661)
..+.+.
T Consensus 191 ~~~~~~ 196 (200)
T cd03217 191 LALEIE 196 (200)
T ss_pred HHhhhc
Confidence 444443
No 253
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-40 Score=314.06 Aligned_cols=216 Identities=28% Similarity=0.459 Sum_probs=191.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD---- 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~---- 78 (661)
++.+|++..+. ++.+|+|+|.++++|.+++|+|||||||||||.+++.+++.+ +|+|+++|......
T Consensus 2 I~i~nv~K~y~------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~ 72 (252)
T COG4604 2 ITIENVSKSYG------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKE 72 (252)
T ss_pred eeehhhhHhhC------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHH
Confidence 56788887764 378999999999999999999999999999999999998874 99999999875321
Q ss_pred -cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 79 -YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS--NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 79 -~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.+.++..-|+..+...+||+|-+.|+ |.|. +...+|.+..+++.++.++|++..|+... +||||||||.
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FG---RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRA 144 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcC---CCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhh
Confidence 35678889999888999999999997 3343 33345667889999999999999999885 6999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
-||..++.+.+.++||||.++||...+.++|+.|++++++ |+||+++.||.+ ....++|+|+-|++|+++..|+++++
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999987 999999999974 78899999999999999999999876
Q ss_pred hH
Q 045930 235 PT 236 (661)
Q Consensus 235 ~~ 236 (661)
.+
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 53
No 254
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.4e-38 Score=316.38 Aligned_cols=193 Identities=27% Similarity=0.371 Sum_probs=164.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++... .
T Consensus 1 l~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRG------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEEC------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccchHHh
Confidence 46789998874 25699999999999999999999999999999999999887 48999999986421 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||.||+.+....+. . + +++++++++.+||.+..++.++ .||||||||++||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la 139 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALA 139 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHH
Confidence 3579999999988898999999988654321 1 1 3467889999999988888775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFL 219 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~l 219 (661)
++++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++.. -.+|+++.
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 140 RLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 99999999999999999999999999999999998889999999999742 23466653
No 255
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1e-38 Score=367.39 Aligned_cols=210 Identities=23% Similarity=0.352 Sum_probs=180.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+.+.
T Consensus 340 ~i~~~~v~f~y~~-----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 340 RIDIDNVSFAYRD-----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHS 411 (592)
T ss_pred eEEEEEEEEEeCC-----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHH
Confidence 4889999998852 246999999999999999999999999999999999999984 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++|||.++. ..++ ++++++++..|+.+ -.||.+|+ ....|||
T Consensus 412 ~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSG 479 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSV 479 (592)
T ss_pred HHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCH
Confidence 25789999999999987 9999999852 1222 34677777777654 35677765 2357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+||||||+||+.+...+.+.|+++.+ ++|+|+++|++ +....||+|++|++|+++..|
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQG 556 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999865 69999999997 456679999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 557 ~~~~L 561 (592)
T PRK10790 557 THQQL 561 (592)
T ss_pred CHHHH
Confidence 87654
No 256
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.1e-38 Score=315.01 Aligned_cols=176 Identities=35% Similarity=0.508 Sum_probs=152.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-------ccCeEEEEecCCC-CC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-------DYGGVAYVTQENI-ML 92 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-------~~~~i~yv~Q~~~-l~ 92 (661)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... .++.++|++|++. .+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 5699999999999999999999999999999999999887 48999999986421 1356999999973 23
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDE 172 (661)
...||+||+.+..... ..+.++.+++++++++.+||.+..|+.++ .||||||||++||++|+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999999875432 23345556778999999999988888775 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 173 PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999888999999999973
No 257
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=360.76 Aligned_cols=212 Identities=23% Similarity=0.372 Sum_probs=178.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.+ +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 266 l~~~~l~~~~--------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p---~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 266 FEVRNVTSRD--------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR---AGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEeCccccC--------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC---CCCeEEECCEECCCCCHHH
Confidence 6677777531 2389999999999999999999999999999999999987 38999999976421
Q ss_pred -ccCeEEEEecC---CCCCCCCCHHHHHHHHHhcC---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCccccc
Q 045930 78 -DYGGVAYVTQE---NIMLGTLTVRETIAYSAHLR---LPS--N-MNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRG 146 (661)
Q Consensus 78 -~~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~ 146 (661)
.++.++|++|+ ..+++.+||+||+.+....+ ... . ....+.+++++++++.+||. +..++.++ .
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 409 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----E 409 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----c
Confidence 13569999998 46889999999998753221 000 0 12233345688999999997 77888876 5
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+ .++.++||++++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999988899999999997 5788999999999999999
Q ss_pred EecCC
Q 045930 227 YFGEA 231 (661)
Q Consensus 227 ~~G~~ 231 (661)
..++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88865
No 258
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=346.42 Aligned_cols=215 Identities=25% Similarity=0.402 Sum_probs=193.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
-|+.+|++..++. .++|+||||++++||++||+|.||||||||+|+|+|.++++ +|+|.+||++...
T Consensus 8 ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 8 LLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPR 78 (500)
T ss_pred eeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHH
Confidence 4778999988863 67999999999999999999999999999999999999984 9999999997542
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
....|+.|.||..+.|+|||.||+.++...+.+ .-+.+++.+++..++|+.+|+....++++++ ||+||||.
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~ 153 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQM 153 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHH
Confidence 245799999999999999999999887554332 2356788889999999999996558888875 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|.||+||..+++++||||||+.|+...+..+.+.+++|+++|.+||++||.. +|++++||||.+|+||+.+..++.
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999999999999999999999995 799999999999999999998883
No 259
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-38 Score=311.03 Aligned_cols=170 Identities=34% Similarity=0.492 Sum_probs=153.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.+++|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECC------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccchhH
Confidence 468899988742 5699999999999999999999999999999999999887 48999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+|++||+.+. ||||||||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~ 109 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRV 109 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHH
Confidence 246799999999999899999987642 899999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.+++|++++|++|+
T Consensus 110 ~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999999999999887 89999999996 57888999999999885
No 260
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-38 Score=332.31 Aligned_cols=212 Identities=20% Similarity=0.314 Sum_probs=177.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|+++ . +|+|.++|.+...
T Consensus 2 ~i~~~nls~~~~~----~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTE----GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCC----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHH
Confidence 4789999999853 12469999999999999999999999999999999999986 2 7999999987421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN------WHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~------~~~~~LSgG 150 (661)
.++.++|++|++.+++. ||+||+.... ..+. +.+.+.++.+||.+..++.++. ...+.||||
T Consensus 74 ~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred HHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 24679999999999875 9999996321 1122 3467788889998766665532 123459999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++. +++|||+++|++ ..+. .||+|++|++|++++.|+
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999999875 489999999997 4555 599999999999999999
Q ss_pred CCChh
Q 045930 231 AKSAP 235 (661)
Q Consensus 231 ~~~~~ 235 (661)
+++..
T Consensus 220 ~~~l~ 224 (275)
T cd03289 220 IQKLL 224 (275)
T ss_pred HHHHh
Confidence 87654
No 261
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=347.49 Aligned_cols=196 Identities=25% Similarity=0.337 Sum_probs=170.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.+. ++.+...+.+.+||+|+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~--------~i~~~~~l~~~lTV~En 105 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA--------LIAISSGLNGQLTGIEN 105 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee--------eEEeccccCCCCcHHHH
Confidence 56999999999999999999999999999999999999874 89999999752 22234456778999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~ 180 (661)
+.+..... ..+.++..++++++++.+||.+..++.++ .||||||||++||+||+.+|++|+|||||+|||+.
T Consensus 106 L~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 106 IELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred HHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 98765432 23445556678899999999988888775 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 181 ~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 178 sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 178 FTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999987899999999996 57889999999999999999998766543
No 262
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-39 Score=345.93 Aligned_cols=216 Identities=27% Similarity=0.469 Sum_probs=180.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.+. ++++||+++||+|++||-+||+|+|||||||+||+|.+.... +|+|.+||++.+.
T Consensus 351 ~I~F~dV~f~y~-----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~----sG~I~IdG~dik~~~~~ 421 (591)
T KOG0057|consen 351 SIEFDDVHFSYG-----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY----SGSILIDGQDIKEVSLE 421 (591)
T ss_pred cEEEEeeEEEeC-----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc----CCcEEECCeeHhhhChH
Confidence 478999999886 356799999999999999999999999999999999999873 8999999997532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHH--cCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.|+.|||||||..||.+ ||.+|+.|+.. ..+.++..+.++.. +++ ..+++-.+|.+|+. ...|||||||
T Consensus 422 SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGer-G~~LSGGekQ 494 (591)
T KOG0057|consen 422 SLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEEVVEACKRAGLHDVISRLPDGYQTLVGER-GLMLSGGEKQ 494 (591)
T ss_pred HhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhc-ccccccchHH
Confidence 25779999999999877 99999998731 34555543333221 111 23456677788863 3569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+||||+++||+|+++|||||.||+.+..++++.+.+. ..|+|+|++.|+. ....-||+|++|++|++...|+-++
T Consensus 495 rvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~e 571 (591)
T KOG0057|consen 495 RVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSE 571 (591)
T ss_pred HHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHH
Confidence 999999999999999999999999999999999999993 3589999999995 5788899999999999999999777
Q ss_pred hhH
Q 045930 234 APT 236 (661)
Q Consensus 234 ~~~ 236 (661)
.+.
T Consensus 572 ll~ 574 (591)
T KOG0057|consen 572 LLA 574 (591)
T ss_pred Hhh
Confidence 654
No 263
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=5.8e-39 Score=376.68 Aligned_cols=211 Identities=27% Similarity=0.390 Sum_probs=177.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+.+.
T Consensus 477 ~I~~~~vsf~y~~----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~ 549 (710)
T TIGR03796 477 YVELRNITFGYSP----LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPRE 549 (710)
T ss_pred eEEEEEEEEecCC----CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHH
Confidence 4789999999863 2357999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++||+.++. | ..+.+ ++.++++..|+.+ -.||.+|+. ...|||
T Consensus 550 ~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSG 618 (710)
T TIGR03796 550 VLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAEG-GANLSG 618 (710)
T ss_pred HHHhheeEEecCChhhhc-cHHHHhhCCC----C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCH
Confidence 26789999999999876 9999998641 1 23333 3455566555543 457777753 367999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+||||||+||+.+...+.+.|++ .++|+|+++|+++ ....||+|++|++|++++.|
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999986 4899999999973 55679999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 694 ~~~~Ll 699 (710)
T TIGR03796 694 THEELW 699 (710)
T ss_pred CHHHHH
Confidence 976654
No 264
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-38 Score=333.66 Aligned_cols=222 Identities=25% Similarity=0.375 Sum_probs=177.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|.+...
T Consensus 45 ~l~i~nl~~~~~~------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 45 KLSVEDLDVYYGD------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred eEEEEEEEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4788999988752 46999999999999999999999999999999999997520 0148999999986421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC---------CCCC-HHHHHHHHHHHHHHcCCCccccccccCc
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP---------SNMN-NEEITDVIEEAITEMGLEDCADRLIGNW 142 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~d~~vg~~ 142 (661)
.++.++|++|++.+++. ||+||+.+....+.. .... .+..+++++++++.+++.+..+... +.
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 196 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DD 196 (305)
T ss_pred ccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cC
Confidence 13579999999988874 999999987542100 0011 1233567889999998853222211 11
Q ss_pred cccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE-EEEe
Q 045930 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL-FLLS 221 (661)
Q Consensus 143 ~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v-~lL~ 221 (661)
.++.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ ..+.++||++ ++|+
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVFLT 274 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEEec
Confidence 2357999999999999999999999999999999999999999999999987 48999999997 5788999997 5779
Q ss_pred CCeEEEecCCCC
Q 045930 222 GGETVYFGEAKS 233 (661)
Q Consensus 222 ~G~~v~~G~~~~ 233 (661)
+|++++.|++++
T Consensus 275 ~G~i~~~g~~~~ 286 (305)
T PRK14264 275 GGELVEYDDTDK 286 (305)
T ss_pred CCEEEEeCCHHH
Confidence 999999987543
No 265
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1e-38 Score=365.49 Aligned_cols=217 Identities=31% Similarity=0.488 Sum_probs=182.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.++. ++++|+|+|++++|||.+||+||||||||||+|.|.|++++ .+|+|.+||.+.+.
T Consensus 328 ~I~f~~vsf~y~~-----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 328 SIEFENVSFSYPG-----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEILIDGIDIRDISLD 399 (567)
T ss_pred eEEEEEEEEEcCC-----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCEehhhcCHH
Confidence 4789999999863 46799999999999999999999999999999999999988 49999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHH--cCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++||+||+.+|. -||+||+.++.. +.++++..+.++.+ +++ ..+.+..||.+|+ ....|||||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge-~G~~LSgGQrQ 472 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQRQ 472 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCcccccceecC-CCccCCHHHHH
Confidence 2578999999999998 599999998732 24555554444433 222 1345578999984 34579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++||||++++|++|+||||||+||+.+...+.+.++++. +|+|+|+++|.++ .+.. +|+|++|++|++++.|+.++
T Consensus 473 rlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999887 5689999999984 4555 99999999999999999776
Q ss_pred hhH
Q 045930 234 APT 236 (661)
Q Consensus 234 ~~~ 236 (661)
...
T Consensus 550 Ll~ 552 (567)
T COG1132 550 LLA 552 (567)
T ss_pred HHH
Confidence 543
No 266
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.4e-38 Score=322.16 Aligned_cols=196 Identities=27% Similarity=0.466 Sum_probs=165.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCC--CCCCHHHHHHHHHh
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML--GTLTVRETIAYSAH 106 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~ 106 (661)
+++++||+++|+||||||||||+++|+|..++. +|+|.++|++....++.++|++|++.++ ..+||.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468999999999999999999999999998874 8999999987543346799999998764 34799999987532
Q ss_pred cCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 045930 107 LRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185 (661)
Q Consensus 107 l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i 185 (661)
.... ......+.+++++++++.+|+++..++.++ +||||||||++||++|+.+|+++++||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 001122334568899999999988888775 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 186 VKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 186 ~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
.+.|++++++|+|||+++|++ .++.++||+++++ +|++++.|+.++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 999999987899999999996 5788999999999 8999999987653
No 267
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.5e-38 Score=310.43 Aligned_cols=170 Identities=26% Similarity=0.447 Sum_probs=151.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+ +|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHH
Confidence 36778887643 899999999999999999999999999999999999874 8999999986431
Q ss_pred --ccCeEEEEecCC---CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 78 --DYGGVAYVTQEN---IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 --~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
.++.++|++|++ .+++.+|++||+.+... ||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~ 110 (182)
T cd03215 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQ 110 (182)
T ss_pred HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHH
Confidence 245799999984 57888999999976421 899999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++
T Consensus 111 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 111 QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999987789999999996 578999999999999974
No 268
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=305.42 Aligned_cols=215 Identities=24% Similarity=0.370 Sum_probs=187.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
|+.+||...+. ...+|++||++.++|+++.|+|.|||||||+|+||.-+.+|. .|+|.+||+...
T Consensus 7 l~v~dlHK~~G------~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 7 LEVEDLHKRYG------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred eehhHHHhhcc------cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCC
Confidence 45556655443 367999999999999999999999999999999999988884 899999997531
Q ss_pred ------------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 045930 77 ------------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144 (661)
Q Consensus 77 ------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 144 (661)
..+.+.++|+|..++.+.+||.||+.-+..-- -+.++.+..++.+..|..+||.+.+|.++.
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~---- 151 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPA---- 151 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCcc----
Confidence 01345899999999999999999997653211 146788888999999999999999998765
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
.|||||+||++|||||+.+|+++++|||||.|||.-.-++++.+++||++|+|.+++||.. ....+...+|+.|.+|.
T Consensus 152 -~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 152 -HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGK 229 (256)
T ss_pred -ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecce
Confidence 5999999999999999999999999999999999999999999999999999999999996 57888999999999999
Q ss_pred EEEecCCCCh
Q 045930 225 TVYFGEAKSA 234 (661)
Q Consensus 225 ~v~~G~~~~~ 234 (661)
+-+.|+|+++
T Consensus 230 iEE~G~P~qv 239 (256)
T COG4598 230 IEEEGPPEQV 239 (256)
T ss_pred ecccCChHHH
Confidence 9999998653
No 269
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-38 Score=365.20 Aligned_cols=212 Identities=29% Similarity=0.495 Sum_probs=180.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ .++.+|+|+|++++|||.+||+||||||||||+++|+|.+++. +|+|.+||.+.+.
T Consensus 338 ~i~~~~v~f~y~~----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 338 SLTLNNVSFTYPD----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEA 410 (574)
T ss_pred eEEEEEEEEECCC----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHH
Confidence 4899999998853 1246999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC------ADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~------~d~~vg~~~~~~LSgG 150 (661)
.++.++||+|++.+|+. |++||+.++. | ..+ ++.+.++++..++.+. .||.+|+. .+.||||
T Consensus 411 ~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgG 479 (574)
T PRK11160 411 ALRQAISVVSQRVHLFSA-TLRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGG 479 (574)
T ss_pred HHHhheeEEcccchhhcc-cHHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHH
Confidence 25679999999999876 9999998753 1 122 2456778888888654 46777653 4679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++|||+|+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++ . ...+|+|++|++|++++.|+
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999986 4899999999984 3 45699999999999999998
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
.++.
T Consensus 557 ~~~l 560 (574)
T PRK11160 557 HQEL 560 (574)
T ss_pred HHHH
Confidence 6544
No 270
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=7.9e-39 Score=324.40 Aligned_cols=204 Identities=30% Similarity=0.443 Sum_probs=168.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++|+++.++. +..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 11 ~l~~~~l~~~~~~---~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 11 IVKFQNVTFAYPT---RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP---QGGQVLLDGKPISQYEHK 84 (226)
T ss_pred eEEEEEEEEEeCC---CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCCchHHcCHH
Confidence 4789999998853 1124699999999999999999999999999999999999887 4899999997642
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCccccccCH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEE-----ITDVIEEAITEM--GLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSg 149 (661)
..++.++|++|++.+++ .||+||+.+.... ....+ .+..++++++.+ |+++..++.+ +.|||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~LSg 153 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS-----CSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQLSG 153 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCC-----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcCCH
Confidence 12356999999998876 5999999875321 11111 112356778888 7877666665 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++. .||++++|++|++
T Consensus 154 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 154 GQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999999876 689999999974 564 5999999999874
No 271
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.2e-38 Score=357.53 Aligned_cols=220 Identities=27% Similarity=0.414 Sum_probs=182.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.+.. +.++.+|+|+||++++||+++|+|||||||||||++|+|..+|. .+|+|.++|++...
T Consensus 257 ~l~~~~l~~~~~~---~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 257 ILEARNLTCWDVI---NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNPA 331 (500)
T ss_pred eEEEeCCcccccc---cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCHH
Confidence 3678888875421 11246999999999999999999999999999999999998741 38999999986421
Q ss_pred --ccCeEEEEecCC---CCCCCCCHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCH
Q 045930 78 --DYGGVAYVTQEN---IMLGTLTVRETIAYSAH--LRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 --~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~--l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|+. .+++.+||+||+.+... ..........+.+++++++++.++|.+ ..|+.++ .|||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSg 406 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSG 406 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCH
Confidence 135699999995 58899999999987532 110001223444567899999999974 5788775 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||++|||+ +++.++||++++|++|+++..+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999997 5889999999999999999877
Q ss_pred CCC
Q 045930 230 EAK 232 (661)
Q Consensus 230 ~~~ 232 (661)
+.+
T Consensus 486 ~~~ 488 (500)
T TIGR02633 486 VNH 488 (500)
T ss_pred ccc
Confidence 654
No 272
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-38 Score=307.02 Aligned_cols=232 Identities=27% Similarity=0.422 Sum_probs=202.6
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
+.|+++||.+++.. .++||++||++|++||+.+||||||||||||.++|+|.-... .++|+|+++|++..
T Consensus 2 ~~L~I~dLhv~v~~-----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHVEVEG-----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEEEecC-----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECCcccccCCH
Confidence 46899999999863 158999999999999999999999999999999999986543 36899999998752
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerq 153 (661)
..+..+...+|.|.-+|..|+.+.|..+.+.+........+..+++++.++.+++++ .+++.+.. |+||||||
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSGGEkK 151 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKK 151 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCcchHH
Confidence 235678999999999999999999998876543211113466788999999999987 78888864 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc--CeEEEEeCCeEEEecCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF--DDLFLLSGGETVYFGEA 231 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~--D~v~lL~~G~~v~~G~~ 231 (661)
|..|+..++.+|++.+||||-||||..+-..+-+.++.++.+|.+++++||.. .+.++. |++.+|.+|+|+..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999999999999999995 677776 99999999999999999
Q ss_pred CChhHHHHhcCCCC
Q 045930 232 KSAPTFFAEAGFPC 245 (661)
Q Consensus 232 ~~~~~~f~~~g~~~ 245 (661)
+..+++++-||.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 7888888888865
No 273
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-38 Score=373.55 Aligned_cols=212 Identities=32% Similarity=0.471 Sum_probs=176.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ .+++.+|+|+|++++|||.+||+||||||||||+|+|+|.+++. +|+|.+||.+.+.
T Consensus 478 ~I~~~nVsf~Y~~---~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 478 LIEFQDVSFSYPN---RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHH 551 (711)
T ss_pred eEEEEEEEEECCC---CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHH
Confidence 4899999999863 12357999999999999999999999999999999999999884 8999999998532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++|||.++.. ..++ +.+.++++..++.+ -.||.+|+. ...|||
T Consensus 552 ~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSG 620 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSG 620 (711)
T ss_pred HHHhhceEEecCcccccc-CHHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCH
Confidence 25679999999999875 99999987521 2232 34566666666543 357777753 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+||||||+||+.+...+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.|
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMG 695 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999998888 22 235899999999973 56779999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 696 t~~eL~ 701 (711)
T TIGR00958 696 THKQLM 701 (711)
T ss_pred CHHHHH
Confidence 976543
No 274
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=356.56 Aligned_cols=204 Identities=21% Similarity=0.335 Sum_probs=174.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------ccCeEEEEecCC---CCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------DYGGVAYVTQEN---IML 92 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------~~~~i~yv~Q~~---~l~ 92 (661)
.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... .++.++|++|++ .++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR---TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC---CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 489999999999999999999999999999999999987 48999999986431 135799999986 488
Q ss_pred CCCCHHHHHHHHHhcCC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHHHHhhCCCEE
Q 045930 93 GTLTVRETIAYSAHLRL-PSN--MNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLL 168 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~ll 168 (661)
+.+||.||+.+...... +.. ....+.++.++++++.+|+. +..++.++ .|||||||||+||++|+.+|++|
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEE
Confidence 99999999987532110 001 12233345788999999994 67888886 49999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 169 FLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 169 lLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||||||+|||+.++..+++.|++++++|.|||++|||+ .++.++||++++|++|++++.|+++++
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999998899999999996 689999999999999999999987653
No 275
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.2e-38 Score=354.43 Aligned_cols=204 Identities=24% Similarity=0.416 Sum_probs=175.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------ccCeEEEEecCC---CCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------DYGGVAYVTQEN---IML 92 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------~~~~i~yv~Q~~---~l~ 92 (661)
.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++... .++.+||++|++ .++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 3799999999999999999999999999999999999874 8999999976421 135699999995 578
Q ss_pred CCCCHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHHHHhhCCCEE
Q 045930 93 GTLTVRETIAYSAHLRLP---SNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLL 168 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~ll 168 (661)
+.+||.||+.+....... .....++.+++++++++.+||. +..|+.++ .|||||||||+||++|+.+|++|
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~ll 417 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVL 417 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEE
Confidence 899999999875321100 0122334456789999999995 67888775 59999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 169 FLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 169 lLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..|+++++
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999988899999999997 588999999999999999999988765
No 276
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.8e-38 Score=357.26 Aligned_cols=206 Identities=24% Similarity=0.244 Sum_probs=177.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||||+|+|++++ .+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p---~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL---LSGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCceEEECCcccccCCHH
Confidence 4889999998742 4599999999999999999999999999999999999887 48999998865321
Q ss_pred -ccCeEEEEecCCCC--C------CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 78 -DYGGVAYVTQENIM--L------GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l--~------~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.. + ..+||+|++.+. .+.+++++++++.+||.+..|+.++ +||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 137 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK-----YLS 137 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc-----cCC
Confidence 12459999998642 1 147888887531 1234578899999999988888875 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999988899999999997 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 217 ~~~~~ 221 (490)
T PRK10938 217 GEREE 221 (490)
T ss_pred CCHHH
Confidence 87654
No 277
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.4e-38 Score=312.62 Aligned_cols=192 Identities=23% Similarity=0.301 Sum_probs=164.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
|.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... .
T Consensus 2 l~~~~l~~~~~------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDYH------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEeC------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEEECCCccccCHHHH
Confidence 78999999874 25699999999999999999999999999999999999987 48999999986431 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|+..+++.+||+||+.+..... .. +..++++++.+++.+..++.++ .||||||||++||
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~la 139 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALL 139 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHH
Confidence 467999999998889999999998864321 11 2468899999999887777765 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
++++.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ..+.+|...
T Consensus 140 ral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 140 RLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999878999999999963 445576543
No 278
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.9e-38 Score=305.87 Aligned_cols=168 Identities=32% Similarity=0.508 Sum_probs=149.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ..+.+++|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~~----~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPG----AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCC----CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHH
Confidence 468899988752 1246999999999999999999999999999999999999874 8999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++. ||+||+ ||||||||++|
T Consensus 74 ~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~l 107 (173)
T cd03246 74 LGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLGL 107 (173)
T ss_pred HHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHHH
Confidence 24579999999988874 999886 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+ +.||++++|++|++
T Consensus 108 a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 108 ARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999999999999987899999999997 355 68999999999974
No 279
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.3e-38 Score=307.64 Aligned_cols=174 Identities=28% Similarity=0.470 Sum_probs=152.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----LD 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~~ 78 (661)
++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ..
T Consensus 1 i~~~~~~~~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPE----QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCC----CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEEHHHHHHHH
Confidence 478999998753 123699999999999999999999999999999999999887 4899999998642 12
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++ .||+||+ + ..||||||||++||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~~i-------------------------------------~-----~~LS~G~~qrv~la 110 (178)
T cd03247 74 SSLISVLNQRPYLFD-TTLRNNL-------------------------------------G-----RRFSGGERQRLALA 110 (178)
T ss_pred HhhEEEEccCCeeec-ccHHHhh-------------------------------------c-----ccCCHHHHHHHHHH
Confidence 457999999988776 6999887 1 35999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
++++.+|++++|||||+|||+.++..+++.|++++ +++|||+++|++. ++ ..+|++++|++|++++.|
T Consensus 111 ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 111 RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999996 4899999999974 55 469999999999998754
No 280
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.1e-38 Score=371.72 Aligned_cols=212 Identities=27% Similarity=0.349 Sum_probs=178.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++|+++.++. ++++|+|+|++++|||.+||+||||||||||+++|+|+++|. +|+|.+||.+.+
T Consensus 473 ~I~~~~vsf~y~~-----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 473 DIVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRH 544 (708)
T ss_pred cEEEEEEEEEcCC-----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHH
Confidence 4789999998852 356999999999999999999999999999999999999884 899999998753
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
..++.+|||+|++.+|+. |++||+.+... + ..+.++ +.++++..|+. +-.||.+|+. ...|||
T Consensus 545 ~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e~-G~~LSg 614 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQDE----IWAACEIAEIKDDIENMPLGYQTELSEE-GSSISG 614 (708)
T ss_pred HHHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHHH----HHHHHHHhCCHHHHHhcccccCcEecCC-CCCCCH
Confidence 225789999999999977 99999987531 1 233333 44555555543 3457888763 367999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||||++++|++|+||||||+||+.+...+.+.|+++ +|+|+|+++|+++ ..+.+|+|++|++|++++.|
T Consensus 615 GQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 615 GQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999985 4799999999973 56789999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 691 ~~~~L~ 696 (708)
T TIGR01193 691 SHDELL 696 (708)
T ss_pred CHHHHH
Confidence 866543
No 281
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.1e-38 Score=368.49 Aligned_cols=213 Identities=31% Similarity=0.473 Sum_probs=179.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|++++|||.+||+||||||||||+|+|+|++++. +|+|.+||.+.+.
T Consensus 463 ~I~~~~vsf~Y~~----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 463 EIEFRNVSFAYPG----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPA 535 (694)
T ss_pred eEEEEEEEEEeCC----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHH
Confidence 4789999999863 2356999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++||+.+.. | ..+.++ +.++++..|+ .+-.||.+|+. ...|||
T Consensus 536 ~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSg 604 (694)
T TIGR03375 536 DLRRNIGYVPQDPRLFYG-TLRDNIALGA----P-YADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSG 604 (694)
T ss_pred HHHhccEEECCChhhhhh-hHHHHHhCCC----C-CCCHHH----HHHHHHHcChHHHHHhCcccccceecCC-CCCCCH
Confidence 25789999999999986 9999998752 1 233433 4555555554 34567888763 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeC
Confidence 999999999999999999999999999999999999999999864 799999999973 56789999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 682 ~~~eLl 687 (694)
T TIGR03375 682 PKDQVL 687 (694)
T ss_pred CHHHHH
Confidence 866543
No 282
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-39 Score=344.27 Aligned_cols=214 Identities=29% Similarity=0.443 Sum_probs=182.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++++++ +..++|+|+|+++++||.+||+|+||||||||++.|+|-++++ +|+|.+||.+...
T Consensus 336 ~l~~~~vsF~y~~----~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~ 408 (573)
T COG4987 336 ALELRNVSFTYPG----QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408 (573)
T ss_pred eeeeccceeecCC----CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChh
Confidence 3789999999975 3457999999999999999999999999999999999999884 9999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSg 149 (661)
.++.+++++|...+|.+ |+|+||..+. | +.+++ .+.++++++||++. .|+.+|+ ..+.|||
T Consensus 409 ~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~-~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSG 477 (573)
T COG4987 409 ALRETISVLTQRVHLFSG-TLRDNLRLAN----P-DASDE----ELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSG 477 (573)
T ss_pred hHHHHHhhhccchHHHHH-HHHHHHhhcC----C-CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCc
Confidence 24579999999998887 9999998763 2 23444 46677788887654 4556765 3478999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|++||+.. -.+.||+|++|++|++++.|
T Consensus 478 GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~Gkiie~G 554 (573)
T COG4987 478 GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEG 554 (573)
T ss_pred hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEECCeeeecC
Confidence 999999999999999999999999999999999999999988776 899999999964 46789999999999999999
Q ss_pred CCCChhH
Q 045930 230 EAKSAPT 236 (661)
Q Consensus 230 ~~~~~~~ 236 (661)
...+..+
T Consensus 555 ~~~~Ll~ 561 (573)
T COG4987 555 THAELLA 561 (573)
T ss_pred CHHhhhc
Confidence 8776543
No 283
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-37 Score=311.10 Aligned_cols=197 Identities=21% Similarity=0.336 Sum_probs=162.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 6 ~l~~~~l~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 6 EIEVENLSVRYAP----DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIEIDGIDISTIPLE 78 (207)
T ss_pred eEEEEEEEEEeCC----CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEhHHCCHH
Confidence 4788999998752 124699999999999999999999999999999999999887 4899999998642
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
..++.++|++|++.+++ .||+||+.+.. ....+ .+.+.++ .++. ++.||||||||++
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~-------~~~~-----~~~LS~G~~qrv~ 135 (207)
T cd03369 79 DLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR-------VSEG-----GLNLSQGQRQLLC 135 (207)
T ss_pred HHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh-------ccCC-----CCcCCHHHHHHHH
Confidence 12457999999998877 49999996531 11221 2333333 2232 3579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|+++|++. ++.. +|++++|++|+++..|++
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999999999999985 4899999999974 5554 999999999999988763
No 284
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-39 Score=320.09 Aligned_cols=192 Identities=29% Similarity=0.455 Sum_probs=172.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec---------ccccCeEEEEecCCCCCCCCC
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR---------RLDYGGVAYVTQENIMLGTLT 96 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~---------~~~~~~i~yv~Q~~~l~~~lT 96 (661)
++++..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||... ...++++|||+||-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 678888775799999999999999999999999985 89999999742 123578999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
|+.||.|+...- .....+++.+.+|+++..++++. .|||||||||+|||||+++|++|+||||.+.
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~-----~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPG-----TLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCC-----ccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986421 23457889999999999999886 4999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 177 LDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||-....+++-.|++|+++ +..|+.+||.+ +|+.+++|+|++|++|++..+|+.+++.
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHh
Confidence 9999999999999999987 88999999996 7999999999999999999999977654
No 285
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8e-38 Score=323.38 Aligned_cols=210 Identities=20% Similarity=0.317 Sum_probs=166.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|++++|||+++|+|+||||||||+++|+|++++ .+|+|.++|++...
T Consensus 19 ~i~~~~l~~~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 19 EIKIHDLCVRYEN----NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIVIDGIDISKLPLH 91 (257)
T ss_pred eEEEEEEEEEeCC----CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEEECCEEhhhCCHH
Confidence 4789999998753 124699999999999999999999999999999999999887 48999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL-------IGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~-------vg~~~~~~LSg 149 (661)
.++.++|++|++.+++. ||+||+.... .... ..+.++++..++.+..+.. ++ ...+.|||
T Consensus 92 ~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~LS~ 159 (257)
T cd03288 92 TLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVT-EGGENFSV 159 (257)
T ss_pred HHhhhEEEECCCCccccc-HHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEec-cCCCcCCH
Confidence 24679999999988764 9999985321 1111 1233333333443322222 11 12357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++.. +|++++|++|+++..|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999975 4899999999974 5554 9999999999999998
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
++++
T Consensus 237 ~~~~ 240 (257)
T cd03288 237 TPEN 240 (257)
T ss_pred CHHH
Confidence 8654
No 286
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.2e-38 Score=360.53 Aligned_cols=210 Identities=28% Similarity=0.459 Sum_probs=176.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 334 ~I~~~~vsf~y~~-----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 334 AVEFDDVSFSYDN-----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRA 405 (588)
T ss_pred eEEEEEEEEEeCC-----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHH
Confidence 4789999998852 245999999999999999999999999999999999999884 9999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. |++||+.++. | ..++++ +.++++..|+. +-.|+.+|+. .+.|||
T Consensus 406 ~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~-g~~LSg 474 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGER-GRQLSG 474 (588)
T ss_pred HHHhheEEEecCcccccc-cHHHHHhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCC-CCCCCH
Confidence 25779999999999876 9999998752 1 233333 44555555543 3457777653 356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||+|+++|++++||||||+||+.++..+.+.|+++.+ ++|+|++||++ ...+.+|++++|++|+++..|
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRL--STVRNADRILVFDNGRVVESG 551 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecH--HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998854 79999999997 356789999999999999999
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
+.++
T Consensus 552 ~~~~ 555 (588)
T PRK13657 552 SFDE 555 (588)
T ss_pred CHHH
Confidence 8544
No 287
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.2e-38 Score=357.91 Aligned_cols=215 Identities=31% Similarity=0.495 Sum_probs=175.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|++++|||.++|+||||||||||+++|+|.+++. +|+|.+||.+...
T Consensus 316 ~i~~~~v~~~y~~----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 316 HLSVENVTIVPPG----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRE 388 (544)
T ss_pred eEEEEEEEEEcCC----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHH
Confidence 4889999998853 1357999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV-----IEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.++.++||+|++.+++. |++||+.+.. + ..+.++..+. .++.++.+ .+-.|+.+|+ ..+.|||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq 459 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPG-TVAENIARFG----E-NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQ 459 (544)
T ss_pred HHhhheEEecCCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHH
Confidence 25679999999999986 9999998532 1 2333332221 12333332 2334666664 346799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||++|||||+++|++|+|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.||++++|++|++++.|+.
T Consensus 460 ~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~ 537 (544)
T TIGR01842 460 RQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGER 537 (544)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCH
Confidence 99999999999999999999999999999999999999999767899999999973 5578999999999999999986
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
++.
T Consensus 538 ~~l 540 (544)
T TIGR01842 538 DEV 540 (544)
T ss_pred HHH
Confidence 543
No 288
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.5e-38 Score=359.76 Aligned_cols=213 Identities=29% Similarity=0.411 Sum_probs=179.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|+++++||.++|+|+||||||||+++|+|++++. +|+|.+||.+.+.
T Consensus 330 ~i~~~~v~f~y~~----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 330 DVEFRNVTFRYPG----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLA 402 (571)
T ss_pred eEEEEEEEEEcCC----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHH
Confidence 4889999999853 1356999999999999999999999999999999999999884 8999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++. |++|||.+.. +...+. ++++++++.+|+. +-.||.+|+. .+.|||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSg 472 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFND-TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSG 472 (571)
T ss_pred HHHhhceEEccCcccccc-cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCH
Confidence 24679999999998876 9999998752 112333 3466667776654 3457778764 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||+++++|++++||||||+||+.++..+++.|+++++ ++|+|++||++ ...+.||+|++|++|+++..|
T Consensus 473 GqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g 549 (571)
T TIGR02203 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRL--STIEKADRIVVMDDGRIVERG 549 (571)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeC
Confidence 999999999999999999999999999999999999999999854 69999999997 467889999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 550 ~~~~l 554 (571)
T TIGR02203 550 THNEL 554 (571)
T ss_pred CHHHH
Confidence 86543
No 289
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-37 Score=310.51 Aligned_cols=196 Identities=28% Similarity=0.426 Sum_probs=154.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.++.. ....+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++| .+
T Consensus 1 l~~~~l~~~~~~~-~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~---~~G~i~~~g--------~i 68 (204)
T cd03250 1 ISVEDASFTWDSG-EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK---LSGSVSVPG--------SI 68 (204)
T ss_pred CEEeEEEEecCCC-CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC---CCCeEEEcC--------EE
Confidence 4689999987531 00013699999999999999999999999999999999999887 489999998 59
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccccccCHHHHHHH
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD-------RLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-------~~vg~~~~~~LSgGerqRv 155 (661)
+|++|++.++ ..||+||+.+.... ..+ ...+.++.+++.+..+ +... ...+.||||||||+
T Consensus 69 ~~~~q~~~l~-~~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv 136 (204)
T cd03250 69 AYVSQEPWIQ-NGTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRI 136 (204)
T ss_pred EEEecCchhc-cCcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHH
Confidence 9999999887 46999999875321 111 2233334444332221 1121 12357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVK-ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+||++|+.+|++++|||||+|||+.++..+.+ .+++++++|+|||+++|++ ..+.. +|++++|++|+
T Consensus 137 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 137 SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 99999999999999999999999999999998 5677766789999999997 45666 99999999985
No 290
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.3e-37 Score=351.71 Aligned_cols=202 Identities=21% Similarity=0.315 Sum_probs=171.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------ccCeEEEEecCC---CCCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------DYGGVAYVTQEN---IMLG 93 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------~~~~i~yv~Q~~---~l~~ 93 (661)
+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++... .++.++|++|++ .+++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 699999999999999999999999999999999998874 8999999986431 134699999984 4788
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 045930 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDE 172 (661)
.+||.|++......+.+......+.+++++++++.+||+ +..|+.++ .|||||||||+||++|+.+|++|||||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 899999986431111111111223345688999999997 67888775 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 173 PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+|||+.++..+.+.|++++++|.|||+++||+ .++.++||++++|++|++++.|++++
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999988899999999997 58999999999999999999887754
No 291
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=331.01 Aligned_cols=214 Identities=29% Similarity=0.376 Sum_probs=193.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++.++++..++ ...+++|||+++++||+.||+|.||||||||+++|.|.++|+ +|+|.++|++...
T Consensus 4 ~l~~~~itK~f~------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 4 ALEMRGITKRFP------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPR 74 (501)
T ss_pred eEEEeccEEEcC------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHH
Confidence 478899998886 367999999999999999999999999999999999999995 9999999998542
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.+..||+|.|+..|++++||.||+..+..-......+.++.+++++++.+++||.=-.|.++++ ||-||||||
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRV 149 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRV 149 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHH
Confidence 2467999999999999999999999886532222356778889999999999999888998875 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
.|-++|..+|++|||||||+-|-|..+.++++.|++++++|+|||++||.. .|+.++|||+.+|.+|+++-.-+
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999999996 69999999999999999886665
No 292
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-38 Score=288.96 Aligned_cols=215 Identities=26% Similarity=0.356 Sum_probs=189.6
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
|.+..+++++.|.. ..+|.||+++.+.||.+.++||||||||||++.|.=+..| .+|+..+.|...+
T Consensus 1 msirv~~in~~yg~------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p---~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 1 MSIQLNGINCFYGA------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CceEEccccccccc------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC---CCCeEEecccccccccC
Confidence 67888999887753 5689999999999999999999999999999999877666 3899888775421
Q ss_pred -------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 77 -------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 77 -------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
..++.+|+|+|+-.+.|.|||.||+.-+. ++. .++++++.+.+..++++.+.|.+.+|+.. -.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----LHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----eeccc
Confidence 12567999999999999999999997653 221 25778888899999999999999999976 35999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||+|||+|||||+.+|++|++||||+.|||.-..++++++++|+..|.|=+++||.. ....+.+.+|+.|.+|++|+.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeec
Confidence 999999999999999999999999999999999999999999999999999999996 4677889999999999999999
Q ss_pred CCC
Q 045930 230 EAK 232 (661)
Q Consensus 230 ~~~ 232 (661)
+.+
T Consensus 224 ~a~ 226 (242)
T COG4161 224 DAS 226 (242)
T ss_pred chh
Confidence 864
No 293
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=9.2e-38 Score=305.91 Aligned_cols=174 Identities=36% Similarity=0.574 Sum_probs=150.2
Q ss_pred EEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----c
Q 045930 4 VWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----D 78 (661)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~ 78 (661)
+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+... .
T Consensus 1 ~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 71 (180)
T cd03214 1 EVENLSVGYGG------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKEL 71 (180)
T ss_pred CeeEEEEEECC------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHH
Confidence 46888887742 46999999999999999999999999999999999998874 8999999986421 1
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++| +++.+||.+..++.+ +.||||||||++||
T Consensus 72 ~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la 109 (180)
T cd03214 72 ARKIAYVPQ-------------------------------------ALELLGLAHLADRPF-----NELSGGERQRVLLA 109 (180)
T ss_pred HHHHhHHHH-------------------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHHH
Confidence 123555555 667788877666665 45999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|++++.|
T Consensus 110 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 110 RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999876 89999999997 4778999999999999988654
No 294
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.9e-37 Score=330.96 Aligned_cols=184 Identities=30% Similarity=0.494 Sum_probs=163.5
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCH
Q 045930 39 VMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN 115 (661)
Q Consensus 39 I~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~ 115 (661)
|+|||||||||||++|+|+.++. +|+|.++|++... .++.++|++|++.+++.+||+||+.|..+.+ ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999874 8999999987532 2467999999999999999999999986542 2344
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 045930 116 EEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195 (661)
Q Consensus 116 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~ 195 (661)
++.+++++++++.+||.+..|+.+. +|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 5556789999999999998888774 59999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 196 -GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 196 -g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+|||++||++ .++..+||++++|++|+++..|++++.
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 89999999996 578999999999999999999987654
No 295
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-37 Score=364.35 Aligned_cols=212 Identities=26% Similarity=0.437 Sum_probs=176.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|++++|||.+||+|+||||||||+|+|+|++++. +|+|.+||.+.+.
T Consensus 455 ~i~~~~vsf~y~~----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 455 AITFENIRFRYAP----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPA 527 (694)
T ss_pred eEEEEEEEEEcCC----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHH
Confidence 4789999998853 1356999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. |++||+.+.. | ..+.+ .+.++++..|+. +-.||.+|+. ...|||
T Consensus 528 ~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~~-g~~LSg 596 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFSR-SIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGEK-GANLSG 596 (694)
T ss_pred HHHHhCeEEccCCeehhh-hHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecCC-CCCCCH
Confidence 25679999999998875 9999998642 1 23333 344445555543 3457777753 467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+|||||++||+.+...+.+.|+++. +++|+|+++|+++ ..+.||++++|++|++++.|
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999999999999999985 5799999999973 44669999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 674 ~~~~l 678 (694)
T TIGR01846 674 RHEEL 678 (694)
T ss_pred CHHHH
Confidence 86543
No 296
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.6e-37 Score=356.32 Aligned_cols=212 Identities=29% Similarity=0.476 Sum_probs=177.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. +.++.+|+|+|++++|||.++|+||||||||||+|+|+|++++. +|+|.+||.+.+.
T Consensus 337 ~i~~~~v~f~y~~---~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 337 EIEFEQVNFAYPA---RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPA 410 (576)
T ss_pred eEEEEEEEEECCC---CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHH
Confidence 4789999998863 11257999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++|+||++.+++. |++||+.++. | ..+. ++++++++..|+.+ -.|+.+|+. ...|||
T Consensus 411 ~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSg 479 (576)
T TIGR02204 411 ELRARMALVPQDPVLFAA-SVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSG 479 (576)
T ss_pred HHHHhceEEccCCccccc-cHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCH
Confidence 24679999999998876 9999998742 1 1222 34666677666643 345666653 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||+++++|++|+||||||+||+.++..+++.|+++. +++|+|++||++ +....+|++++|++|+++..|
T Consensus 480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeee
Confidence 99999999999999999999999999999999999999999985 479999999997 456789999999999999999
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
+.++
T Consensus 557 ~~~~ 560 (576)
T TIGR02204 557 THAE 560 (576)
T ss_pred cHHH
Confidence 8654
No 297
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.1e-37 Score=354.57 Aligned_cols=212 Identities=25% Similarity=0.369 Sum_probs=176.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|++++|||.++|+||||||||||+++|+|.++|. +|+|.+||.+...
T Consensus 313 ~I~~~~v~~~y~~----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~ 385 (569)
T PRK10789 313 ELDVNIRQFTYPQ----TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLD 385 (569)
T ss_pred cEEEEEEEEECCC----CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHH
Confidence 3789999998853 1356999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++. |++||+.+.. + ..+.+ .++++++..++ .+-.|+.+|+. ...|||
T Consensus 386 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSg 454 (569)
T PRK10789 386 SWRSRLAVVSQTPFLFSD-TVANNIALGR----P-DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGER-GVMLSG 454 (569)
T ss_pred HHHhheEEEccCCeeccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCC-CCcCCH
Confidence 24679999999999876 9999998752 1 23333 34445555554 34457777653 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++++|||||+|||+.+...+.+.|+++. +|+|+|+++|+++ ..+.+|++++|++|+++..|
T Consensus 455 Gq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g 531 (569)
T PRK10789 455 GQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRG 531 (569)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999985 5899999999973 45679999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 532 ~~~~l 536 (569)
T PRK10789 532 NHDQL 536 (569)
T ss_pred CHHHH
Confidence 86543
No 298
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.5e-37 Score=308.76 Aligned_cols=199 Identities=24% Similarity=0.344 Sum_probs=157.5
Q ss_pred EEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------
Q 045930 4 VWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------ 77 (661)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------ 77 (661)
...|+.+.++. .+.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|++...
T Consensus 2 ~~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGS-----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCC-----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCccccccccccc
Confidence 45667776542 35699999999999999999999999999999999999877 48999999975321
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCcccccc
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR-------LIGNWHWRGI 147 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~-------~vg~~~~~~L 147 (661)
.++.++|++|++.++ ..||+||+.+... ... +...++++.++|.+..+. ..+ ..+..|
T Consensus 74 ~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L 141 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINL 141 (218)
T ss_pred chhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcC
Confidence 135699999999877 5799999987531 111 123455666666543221 111 124579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK--ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~--~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|||||||++||++|+.+|++|||||||+|||+.++..+++ .++.+.++|.|||+++|++. .+ ..+|++++|++|.
T Consensus 142 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 142 SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 9999999999999999999999999999999999999998 67777667899999999974 45 5699999999884
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.1e-37 Score=352.22 Aligned_cols=211 Identities=27% Similarity=0.376 Sum_probs=173.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .+.+|+|+|+++++||.++|+||||||||||+++|+|.+++ .+|+|.+||.+...
T Consensus 334 ~i~~~~v~~~y~~-----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~~ 405 (585)
T TIGR01192 334 AVEFRHITFEFAN-----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP---TVGQILIDGIDINTVTRE 405 (585)
T ss_pred eEEEEEEEEECCC-----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC---CCCEEEECCEEhhhCCHH
Confidence 4789999998753 24589999999999999999999999999999999999988 48999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++ .|++||+.+.. + ..+.++.. +.++..++ .+..|+.+|+ ....|||
T Consensus 406 ~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~----~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSg 474 (585)
T TIGR01192 406 SLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEVY----EAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSG 474 (585)
T ss_pred HHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHHH----HHHHHhCcHHHHHhccccccchhcC-CCCCCCH
Confidence 2467999999998886 59999998752 1 23344333 33333333 2334666664 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ .+ +.+|++++|++|+++..|
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKG 551 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999885 4899999999973 44 679999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 552 ~~~~l 556 (585)
T TIGR01192 552 SFQEL 556 (585)
T ss_pred CHHHH
Confidence 86543
No 300
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=350.75 Aligned_cols=219 Identities=26% Similarity=0.363 Sum_probs=190.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.+||++...
T Consensus 4 ~l~~~nl~~~y~~~--~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSYPSG--EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEeCCC--CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHH
Confidence 48999999988531 11356999999999999999999999999999999999999874 8999999987431
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
.++.++|++|++.+++.+|+.||+.+..... ....++.++++.++++.+||++..|+.++ .||||||
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~LS~Gq~ 150 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----QLSGGQQ 150 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----cCCHHHH
Confidence 1357999999999999999999999865432 23345666788999999999988888775 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. ..+.||++++|++|++++.|+++
T Consensus 151 qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~ 228 (648)
T PRK10535 151 QRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQ 228 (648)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCcc
Confidence 9999999999999999999999999999999999999999878999999999973 44579999999999999999998
Q ss_pred Chh
Q 045930 233 SAP 235 (661)
Q Consensus 233 ~~~ 235 (661)
+..
T Consensus 229 ~~~ 231 (648)
T PRK10535 229 EKV 231 (648)
T ss_pred ccc
Confidence 764
No 301
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.5e-36 Score=292.77 Aligned_cols=156 Identities=30% Similarity=0.474 Sum_probs=140.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +++++|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~ 71 (163)
T cd03216 1 LELRGITKRFGG------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRD 71 (163)
T ss_pred CEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHH
Confidence 468999998852 4699999999999999999999999999999999999987 48999999986431
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++| ||||||||++
T Consensus 72 ~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl~ 92 (163)
T cd03216 72 ARRAGIAMVYQ-----------------------------------------------------------LSVGERQMVE 92 (163)
T ss_pred HHhcCeEEEEe-----------------------------------------------------------cCHHHHHHHH
Confidence 1345788777 8999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.+.+|++++|++|++++
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999987799999999996 46888999999999999875
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-37 Score=297.14 Aligned_cols=166 Identities=33% Similarity=0.578 Sum_probs=146.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~----~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPG----RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCC----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhhhcCHHH
Confidence 468899988753 113699999999999999999999999999999999999987 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++ .||.||+ ||||||||++|
T Consensus 74 ~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~l 107 (171)
T cd03228 74 LRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIAI 107 (171)
T ss_pred HHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHHH
Confidence 2356999999987776 5998886 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.. ||++++|++|+
T Consensus 108 a~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 108 ARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999999999964 79999999997 46666 99999999885
No 303
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.3e-36 Score=294.00 Aligned_cols=163 Identities=34% Similarity=0.538 Sum_probs=143.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|. +.+
T Consensus 1 i~~~~~~~~~~~-----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i 66 (166)
T cd03223 1 IELENLSLATPD-----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDL 66 (166)
T ss_pred CEEEEEEEEcCC-----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceE
Confidence 468999988742 246999999999999999999999999999999999998874 899999874 569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|++.++ ..||+||+.+. . .+.||||||||++||++|+
T Consensus 67 ~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 67 LFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred EEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHHHHHHHHHH
Confidence 9999998765 57999998642 1 1469999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ....+|++++|++|
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 999999999999999999999999999987 589999999973 45799999999865
No 304
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.6e-36 Score=311.42 Aligned_cols=182 Identities=25% Similarity=0.354 Sum_probs=155.3
Q ss_pred cceeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCC
Q 045930 21 RRLLNGLTGYAE-----PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 21 ~~iL~~vs~~i~-----~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~l 95 (661)
.+.++|++++++ +||+++|+|||||||||||++|+|.+++. +|+|.++|. .++|++|+....+.+
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEG 76 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCC
Confidence 346677777776 79999999999999999999999999874 899999884 589999998877789
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 045930 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175 (661)
Q Consensus 96 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts 175 (661)
||+|++.+..... . . ....++++++.+||.+..++.++ .|||||||||+||++|+.+|++++|||||+
T Consensus 77 tv~e~l~~~~~~~---~-~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~ 144 (246)
T cd03237 77 TVRDLLSSITKDF---Y-T---HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSA 144 (246)
T ss_pred CHHHHHHHHhhhc---c-c---cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999997653211 0 1 12346788999999988888775 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 176 GLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
+||+.++..+.+.|++++++ |+|||+++|++ .++..+||++++|+++..
T Consensus 145 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPS 194 (246)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCe
Confidence 99999999999999999864 89999999996 578889999999976543
No 305
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-36 Score=300.92 Aligned_cols=190 Identities=23% Similarity=0.285 Sum_probs=160.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-ccCe
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DYGG 81 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~~~ 81 (661)
++++|+++.+.. +.+++ +|+++++||+++|+||||||||||+++|+|..++. +|+|.++|.+... ..+.
T Consensus 2 l~~~~l~~~~~~------~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNIEQ------KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEECC------cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhh
Confidence 789999998742 34555 99999999999999999999999999999998874 8999999986532 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|++.+++.+||+||+.+..... . ..++++++++.+++.+..++.++ .||||||||++||+++
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rl~la~al 138 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCY-----SLSSGMQKIVAIARLI 138 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChh-----hCCHHHHHHHHHHHHH
Confidence 899999988888899999998865321 1 13467888999999888887764 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
+.+|++++|||||+|||+.++..+.+.|++.+++|+|||+++|++. ++ +.+|-+
T Consensus 139 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 139 ACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 9999999999999999999999999999887777999999999974 33 335554
No 306
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.9e-37 Score=379.86 Aligned_cols=217 Identities=25% Similarity=0.371 Sum_probs=179.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--------------------
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-------------------- 61 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-------------------- 61 (661)
.++|+||++.|++ +++++||+|+|++++||+.+||+||||||||||+++|.|++++.
T Consensus 1165 ~I~f~nVsF~Y~~---~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYIS---RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCC---CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 4889999999974 12357999999999999999999999999999999999999861
Q ss_pred -------------------------------CceeeEEEECCeecc-----cccCeEEEEecCCCCCCCCCHHHHHHHHH
Q 045930 62 -------------------------------VVMTGNVLLNGKKRR-----LDYGGVAYVTQENIMLGTLTVRETIAYSA 105 (661)
Q Consensus 62 -------------------------------~~~~G~i~~~g~~~~-----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 105 (661)
...+|+|++||.+.+ ..++.+|||+|++.+|+. |++|||.++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC
Confidence 014899999999853 236789999999999865 9999999862
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 045930 106 HLRLPSNMNNEEITDVIEEAITEM-------GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178 (661)
Q Consensus 106 ~l~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD 178 (661)
+ ..+.++ ++++++.. .|.+-.||.+|+ ....||||||||++|||||+++|+||+||||||+||
T Consensus 1321 ----~-~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265 1321 ----E-DATRED----VKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred ----C-CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 1 234444 44444443 355677999986 345799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEEEEeC----CeEE-EecCCCCh
Q 045930 179 SAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSG----GETV-YFGEAKSA 234 (661)
Q Consensus 179 ~~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~----G~~v-~~G~~~~~ 234 (661)
+.+...|.+.|++++ .+++|+|+++|++ ...+.||+|++|++ |+++ +.|+.++.
T Consensus 1391 ~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265 1391 SNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence 999999999999997 3689999999997 35677999999998 9955 89986553
No 307
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=315.19 Aligned_cols=222 Identities=27% Similarity=0.407 Sum_probs=195.0
Q ss_pred eEEEEEEEEEeecCCc-----ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc
Q 045930 2 YLVWEEVTVVVPNFGS-----GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~ 76 (661)
-|+-+|+++.++..+. ....+++++||+++++||.++|+|.||||||||=.+|.+++++ +|+|.++|++..
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~ 351 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDID 351 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCcccc
Confidence 4678899988875321 1224689999999999999999999999999999999999886 699999998753
Q ss_pred --------cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccc
Q 045930 77 --------LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWR 145 (661)
Q Consensus 77 --------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~ 145 (661)
..++++-.|+||| .+-|.+||.|-+.-+...+-| ..++.|+.+++.++|+++||+. .++++. +
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-----h 425 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP-----H 425 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC-----c
Confidence 1256789999998 588999999999999887654 4688999999999999999964 566665 5
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+.|||||||++||||++.+|++++||||||.||-.-+.+++++|++|.++ |.+-++++||. ..+..+||+|++|++|+
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGK 504 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCE
Confidence 79999999999999999999999999999999999999999999999765 89999999996 68899999999999999
Q ss_pred EEEecCCCCh
Q 045930 225 TVYFGEAKSA 234 (661)
Q Consensus 225 ~v~~G~~~~~ 234 (661)
+|+.|+++++
T Consensus 505 iVE~G~~~~i 514 (534)
T COG4172 505 IVEQGPTEAV 514 (534)
T ss_pred EeeeCCHHHH
Confidence 9999997654
No 308
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1e-36 Score=306.53 Aligned_cols=195 Identities=20% Similarity=0.234 Sum_probs=161.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEE-ECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL-LNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~-~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
++|+|||+++++||+++|+||||||||||+++|+|..++. +|+|. ++|... .+.+++.+++.+||+||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999998874 89997 776532 12345678899999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~ 180 (661)
+.+.+... ....++. .+.+.+.++|++..|+.++ +||||||||++||++|+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99876543 1223322 2334456788888888775 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHHh
Q 045930 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240 (661)
Q Consensus 181 ~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~ 240 (661)
++..+.+.|.+..+ ++|+|+++|++ .++..+||++++|++|++++.|+.+++..++..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998865443 46899999997 478889999999999999999998877766544
No 309
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-38 Score=292.39 Aligned_cols=191 Identities=25% Similarity=0.415 Sum_probs=168.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----cccCeEEEEecCCCCCCC
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----LDYGGVAYVTQENIMLGT 94 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~~~~~i~yv~Q~~~l~~~ 94 (661)
+.+||+++|+++++||..+|.||||||||||+|+++.+.+++ +|++++.|++.+ ..+.+|+|+.|.+.+|+.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 467999999999999999999999999999999999999984 999999999864 236789999999999998
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 045930 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP 173 (661)
||++|+.|..++|..+ + .+++..+.|++++|.+ ..++.+- .||||||||++|+|.|..-|+||+||||
T Consensus 92 -tVeDNlifP~~~r~rr--~---dr~aa~~llar~~l~~~~L~k~it-----~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR--P---DRAAALDLLARFALPDSILTKNIT-----ELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred -chhhccccchHHhccC--C---ChHHHHHHHHHcCCchhhhcchhh-----hccchHHHHHHHHHHhhcCCceEEecCc
Confidence 9999999988776321 1 2355778899999976 4555553 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 174 TSGLDSAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
||.||..++..|-++|.++. ++...|+.+||++ ++..+.+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999986 5689999999997 577899999999999876
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=343.46 Aligned_cols=207 Identities=24% Similarity=0.369 Sum_probs=172.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|+++|+++.++ ++++|+|+||++++||+++|+|||||||||||++|+|++++. +|+|.++|. ..+
T Consensus 2 l~i~~ls~~~~------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i 66 (530)
T PRK15064 2 LSTANITMQFG------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERL 66 (530)
T ss_pred EEEEEEEEEeC------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEE
Confidence 78999999874 256999999999999999999999999999999999999874 899999873 358
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHh-c-----------CCCCC-----------------CCHHHHHHHHHHHHHHcCCCc
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAH-L-----------RLPSN-----------------MNNEEITDVIEEAITEMGLED 133 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~-l-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~ 133 (661)
+|++|++.+++.+||+|++.+... . ..+.. ....+.+++++++++.+||.+
T Consensus 67 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 146 (530)
T PRK15064 67 GKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPE 146 (530)
T ss_pred EEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCh
Confidence 999999989999999999986421 0 00000 000123457889999999976
Q ss_pred cc-cccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh
Q 045930 134 CA-DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFA 212 (661)
Q Consensus 134 ~~-d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~ 212 (661)
.. ++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|++ ..+.+
T Consensus 147 ~~~~~~~~-----~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~ 217 (530)
T PRK15064 147 EQHYGLMS-----EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNS 217 (530)
T ss_pred hHhcCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHh
Confidence 43 44554 5999999999999999999999999999999999999999999863 589999999996 57889
Q ss_pred hcCeEEEEeCCeE-EEecCCCC
Q 045930 213 LFDDLFLLSGGET-VYFGEAKS 233 (661)
Q Consensus 213 ~~D~v~lL~~G~~-v~~G~~~~ 233 (661)
+||++++|++|++ ++.|+.++
T Consensus 218 ~~d~i~~l~~g~i~~~~g~~~~ 239 (530)
T PRK15064 218 VCTHMADLDYGELRVYPGNYDE 239 (530)
T ss_pred hcceEEEEeCCEEEEecCCHHH
Confidence 9999999999999 47887654
No 311
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=340.71 Aligned_cols=213 Identities=23% Similarity=0.359 Sum_probs=174.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++. .+.+|+|||+++++||+++|+||||||||||+++|+|..++. +|+|.++|++...
T Consensus 251 i~~~~l~~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 251 LEVRNLTSL--------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNANE 319 (491)
T ss_pred EEEeCcccc--------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHHH
Confidence 566676653 135899999999999999999999999999999999999874 8999999976531
Q ss_pred -ccCeEEEEecCC---CCCCCCCHHHHHHHHH-hcCCC-CC-CCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQEN---IMLGTLTVRETIAYSA-HLRLP-SN-MNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~-~l~~~-~~-~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++ .+++.+|+.+|..+.. ..... .. .+..+.++.++++++.+++. +..|+.++ +|||
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSg 394 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG-----SLSG 394 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc-----cCCc
Confidence 134599999985 4688898887743221 00000 01 12334456788999999995 46677775 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+||++++.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+ +++.++||++++|++|+++..+
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999996 5788999999999999999877
Q ss_pred CCC
Q 045930 230 EAK 232 (661)
Q Consensus 230 ~~~ 232 (661)
+.+
T Consensus 474 ~~~ 476 (491)
T PRK10982 474 DTK 476 (491)
T ss_pred ccc
Confidence 653
No 312
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.9e-36 Score=313.42 Aligned_cols=199 Identities=21% Similarity=0.372 Sum_probs=159.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++| .
T Consensus 39 ~l~i~nls~~--------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g--------~ 99 (282)
T cd03291 39 NLFFSNLCLV--------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG--------R 99 (282)
T ss_pred eEEEEEEEEe--------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------E
Confidence 3678888873 145999999999999999999999999999999999999874 89999987 3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccccccCHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD-------RLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-------~~vg~~~~~~LSgGerqR 154 (661)
++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+..+ +.++. ..+.||||||||
T Consensus 100 i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~qr 167 (282)
T cd03291 100 ISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQRAR 167 (282)
T ss_pred EEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHHHH
Confidence 8999999988875 999999864211 11 12233444445443222 22221 235799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL-KNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L-~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||++|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||+++|++. ++ ..||++++|++|++++.|++++
T Consensus 168 v~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 168 ISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999865 5564 4799999999974 44 5799999999999999998654
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
.
T Consensus 245 ~ 245 (282)
T cd03291 245 L 245 (282)
T ss_pred H
Confidence 3
No 313
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-37 Score=303.02 Aligned_cols=213 Identities=28% Similarity=0.415 Sum_probs=182.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
++++|+++.+. +|+||+|+|.+|+|||-.+|+|||||||||||++++|..++. +|.+.+.|+...
T Consensus 32 i~l~~v~v~r~------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~ 102 (257)
T COG1119 32 IELKNVSVRRN------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIF 102 (257)
T ss_pred EEecceEEEEC------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchH
Confidence 78899999875 478999999999999999999999999999999999999874 899999998642
Q ss_pred cccCeEEEEecC--CCCCCCCCHHHHHHHH--HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 77 LDYGGVAYVTQE--NIMLGTLTVRETIAYS--AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 77 ~~~~~i~yv~Q~--~~l~~~lTV~E~l~~~--~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
..++.||+|.-+ ..+.+..+|+|-+.-+ +..........++..+++..+++.+|+.+.+|+..+. ||-|||
T Consensus 103 elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~-----LS~Ge~ 177 (257)
T COG1119 103 ELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQ 177 (257)
T ss_pred HHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh-----cCHhHH
Confidence 236789999664 3455677888877533 2222222122345567889999999999999999875 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD--GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~--g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||-|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|++||++ +|+-..+++++++++|+++++|.
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999999875 89999999996 68999999999999999999874
No 314
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-36 Score=355.72 Aligned_cols=218 Identities=31% Similarity=0.446 Sum_probs=187.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.||+ .++.+||+|+|+++++|+-+||+|||||||||.+.+|-..++| ..|.|.+||.+.+.
T Consensus 987 ~I~~~~V~F~YPs---RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp---~~G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPT---RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP---DAGKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred EEEEeeeEeeCCC---CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEEECCcccccCCHH
Confidence 4799999999985 4568899999999999999999999999999999999999988 49999999988642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHH--cCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.|+++|.|.|+|.||.. |++|||.|+. . ..+.+|..+..+.. ++. .+|.+-.||.+|+.+ .+|||||||
T Consensus 1061 ~LR~~i~lVsQEP~LF~~-TIrENI~YG~----~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG-~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEPVLFNG-TIRENIAYGS----E-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG-VQLSGGQKQ 1133 (1228)
T ss_pred HHHHhcceeccCchhhcc-cHHHHHhccC----C-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc-CcCCchHHH
Confidence 26889999999999987 9999999981 1 24555544433322 122 378999999999733 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++||||+++||+||||||.||.||+++.+-+.+.|.+.. +|+|.|++.|.++ ..+.+|.|.++++|++++.|+-++
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHH
Confidence 9999999999999999999999999999999999999975 4899999999974 567899999999999999998665
Q ss_pred hh
Q 045930 234 AP 235 (661)
Q Consensus 234 ~~ 235 (661)
..
T Consensus 1211 L~ 1212 (1228)
T KOG0055|consen 1211 LL 1212 (1228)
T ss_pred HH
Confidence 44
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.6e-36 Score=343.32 Aligned_cols=208 Identities=25% Similarity=0.368 Sum_probs=173.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++||++.++. ++.+|+|+||++++||+++|+|||||||||||++|+|.+++ .+|+|.+++. ..
T Consensus 6 ~l~i~~l~~~y~~-----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p---~~G~i~~~~~------~~ 71 (556)
T PRK11819 6 IYTMNRVSKVVPP-----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE---FEGEARPAPG------IK 71 (556)
T ss_pred EEEEeeEEEEeCC-----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEecCC------CE
Confidence 5889999998741 25799999999999999999999999999999999999987 4899998752 46
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHh-cC------------CCCCCC--------------------HHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAH-LR------------LPSNMN--------------------NEEITDVIEEAITE 128 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~-l~------------~~~~~~--------------------~~~~~~~v~~~l~~ 128 (661)
+|||+|++.+++.+||.||+.+... .+ ...... ..+.+++++++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 9999999999999999999987531 00 000000 00124568889999
Q ss_pred cCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 129 MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 129 lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
+||.. .++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||++ .
T Consensus 152 ~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~ 221 (556)
T PRK11819 152 LRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-Y 221 (556)
T ss_pred CCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-H
Confidence 99964 677765 599999999999999999999999999999999999999999999873 5999999996 5
Q ss_pred HHHhhcCeEEEEeCCeEE-EecCCCC
Q 045930 209 EVFALFDDLFLLSGGETV-YFGEAKS 233 (661)
Q Consensus 209 ~i~~~~D~v~lL~~G~~v-~~G~~~~ 233 (661)
++.++||+|++|++|+++ +.|+.++
T Consensus 222 ~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred HHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 788999999999999986 7776543
No 316
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-36 Score=345.96 Aligned_cols=185 Identities=31% Similarity=0.482 Sum_probs=156.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ ++++|+|+|++++|||.+||+||||||||||+|+|+|.++++ +|+|.+||.+.+.
T Consensus 334 ~I~~~~vsf~Y~~-----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 334 TLELRDLSFGYPG-----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDE 405 (529)
T ss_pred eEEEEEEEEecCC-----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHH
Confidence 4789999999853 245999999999999999999999999999999999999884 9999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSgG 150 (661)
.++.++||+|++.+|+. |++|||.++. | ..+++ +++++++..++. +-.||.+|+.+ ..||||
T Consensus 406 lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~G-~~LSGG 474 (529)
T TIGR02868 406 LRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DATDE----ELWAALERVGLADWLRSLPDGLDTVLGEGG-ARLSGG 474 (529)
T ss_pred HHhheEEEccCcccccc-cHHHHHhccC----C-CCCHH----HHHHHHHHcCCHHHHHhCcccccchhcccc-CcCCHH
Confidence 24679999999999987 9999999852 1 22333 355666666554 45688888633 569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
||||++|||||+++|++|+||||||+||+.+...+.+.|+++. +++|+|+++|++
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999874 479999999984
No 317
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.4e-36 Score=338.89 Aligned_cols=214 Identities=21% Similarity=0.354 Sum_probs=172.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.+++ +.+|+|+|+++++||+++|+||||||||||+++|+|..++. .+|+|.++|++..
T Consensus 260 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 260 RIVLNNGVVSYND------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred eEEEeceEEEECC------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 3788999887742 46999999999999999999999999999999999976531 3799999997531
Q ss_pred -cccCeEEEEecCCCCCC--CCCHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHH
Q 045930 77 -LDYGGVAYVTQENIMLG--TLTVRETIAYSAHL--RLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGG 150 (661)
Q Consensus 77 -~~~~~i~yv~Q~~~l~~--~lTV~E~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgG 150 (661)
..++.++|++|++.++. ..|++|++.+.... ....... ++.+++++++++.+||.+ ..++.++ .||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH-----SLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchh-----hCCHH
Confidence 12356999999876543 35777776543211 1111111 233567899999999987 7888775 59999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCchHHHh-hcCeEEEEeCCeEEEe
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG-RTIISSIHQPSSEVFA-LFDDLFLLSGGETVYF 228 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g-~tvi~s~Hq~~~~i~~-~~D~v~lL~~G~~v~~ 228 (661)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++ +++.+ ++|++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998875 4799999997 46766 5999999999998876
Q ss_pred cC
Q 045930 229 GE 230 (661)
Q Consensus 229 G~ 230 (661)
-.
T Consensus 485 ~~ 486 (490)
T PRK10938 485 VQ 486 (490)
T ss_pred ec
Confidence 44
No 318
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=321.95 Aligned_cols=220 Identities=29% Similarity=0.454 Sum_probs=185.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|..+++++.-+ +.++.+|+|+||++.+||.+||+||||||||||.++|.|..++ .+|.|.+||.+.+.
T Consensus 334 ~L~Ve~l~~~PP----g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLDga~l~qWd~e 406 (580)
T COG4618 334 ALSVERLTAAPP----GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDRE 406 (580)
T ss_pred eeeEeeeeecCC----CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEecchhhhcCCHH
Confidence 477888888543 3457899999999999999999999999999999999999988 49999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT-----DVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.-+.|||.||+-.+|+. ||.|||. |...+.+.+..- ..|.+++ +.|.+-.||.+|+.+ ..|||||
T Consensus 407 ~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~G-~~LSgGQ 477 (580)
T COG4618 407 QLGRHIGYLPQDVELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEGG-ATLSGGQ 477 (580)
T ss_pred HhccccCcCcccceecCC-cHHHHHH-----hccccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCCCC-CCCCchH
Confidence 23679999999999988 9999996 222222222211 1233333 367888999999743 6899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+++||||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.| .+...+|+|++|++|++-.+|+.
T Consensus 478 RQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r 555 (580)
T COG4618 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPR 555 (580)
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCH
Confidence 9999999999999999999999999999999999999999999999999999998 48899999999999999999999
Q ss_pred CChhHHHH
Q 045930 232 KSAPTFFA 239 (661)
Q Consensus 232 ~~~~~~f~ 239 (661)
+|++....
T Consensus 556 ~eVLa~~~ 563 (580)
T COG4618 556 EEVLAKVL 563 (580)
T ss_pred HHHHHHhc
Confidence 98877543
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=340.47 Aligned_cols=199 Identities=23% Similarity=0.334 Sum_probs=170.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|. +.
T Consensus 319 ~l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 383 (530)
T PRK15064 319 ALEVENLTKGFD------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------AN 383 (530)
T ss_pred eEEEEeeEEeeC------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 378899998774 246999999999999999999999999999999999998874 899999874 46
Q ss_pred EEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHH
Q 045930 82 VAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 82 i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
+||++|++. +++.+||+|++.+... . .+.+++++++++.+|+. +..|+.++ .||||||||++||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la 450 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQ---E-----GDDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGGEKGRMLFG 450 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhcc---C-----CccHHHHHHHHHHcCCChhHhcCccc-----ccCHHHHHHHHHH
Confidence 999999863 5667999999864210 0 11235678999999994 67788775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE-EecCCC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAK 232 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v-~~G~~~ 232 (661)
++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+ +++..+||++++|++|+++ +.|+++
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~ 521 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYE 521 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHH
Confidence 9999999999999999999999999999999887 35999999996 5788999999999999998 777654
No 320
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.2e-36 Score=342.24 Aligned_cols=198 Identities=31% Similarity=0.489 Sum_probs=166.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ .++++|+|+|++++|||.++|+||||||||||+|+|+|.+++. +|+|.+||.+.+.
T Consensus 320 ~i~~~~v~f~y~~----~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 320 SLEFSGLSVAYPG----RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADAD 392 (529)
T ss_pred eEEEEEEEEECCC----CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHH
Confidence 4789999999863 1246999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. |++||+.++.. ..++ +.++++++..++.+ -.||.+|+ ....|||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSg 461 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSG 461 (529)
T ss_pred HHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCH
Confidence 25679999999999875 99999987521 1233 34556666666643 35777775 3357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
|||||++|||+|+++|++++||||||+||+.+...+.+.|+++. +++|+|+++|+++ ..+.||+|++|
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999999999999999999999999999999999999999985 5899999999973 45779999875
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.2e-36 Score=341.19 Aligned_cols=208 Identities=25% Similarity=0.370 Sum_probs=170.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+++. ..
T Consensus 4 ~i~~~nls~~~~~-----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p---~~G~i~~~~~------~~ 69 (552)
T TIGR03719 4 IYTMNRVSKVVPP-----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE---FNGEARPAPG------IK 69 (552)
T ss_pred EEEEeeEEEecCC-----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEecCC------CE
Confidence 4789999998741 25699999999999999999999999999999999999887 4899998752 46
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhc-C-----C------CCCCCHH---------------------HHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHL-R-----L------PSNMNNE---------------------EITDVIEEAITE 128 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l-~-----~------~~~~~~~---------------------~~~~~v~~~l~~ 128 (661)
+||++|++.+++.+||+||+.+.... + . ......+ +...+++++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 99999999999999999999875321 0 0 0000010 012456778888
Q ss_pred cCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 129 MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 129 lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
+|+.. .++.++ .|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+++|++ .
T Consensus 150 ~~l~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 150 LRCPP-WDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCCc-ccCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 88854 566664 59999999999999999999999999999999999999999999876 35999999996 5
Q ss_pred HHHhhcCeEEEEeCCeEE-EecCCCC
Q 045930 209 EVFALFDDLFLLSGGETV-YFGEAKS 233 (661)
Q Consensus 209 ~i~~~~D~v~lL~~G~~v-~~G~~~~ 233 (661)
.+..+||++++|++|+++ +.|+.++
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~ 245 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSS 245 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHH
Confidence 788999999999999976 6776554
No 322
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=288.76 Aligned_cols=217 Identities=28% Similarity=0.433 Sum_probs=189.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC-eecc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG-KKRR---- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g-~~~~---- 76 (661)
.|+.+|+++++.. .++|+|+||++.|||+-+|+|||||||||+|++|+|..+|. .|++.++| .+..
T Consensus 5 iL~~~~vsVsF~G------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 5 ILYLDGVSVSFGG------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPE 75 (249)
T ss_pred eEEEeceEEEEcc------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCH
Confidence 5789999999874 46999999999999999999999999999999999998884 89999999 3332
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-----NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
..+..||--+|.|..|..+||+|||..+.+...+- .....+-+++++++|+..||.+.+|...+. ||.
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~-----LSH 150 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LSH 150 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhh-----hcc
Confidence 23567999999999999999999999886543110 011234467899999999999999999875 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||++.|++-++.+|++|+||||++|+--....+.-++|+.+|. +++|+++.||. ..+.+++|+|.+|..|.+...|
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH-HHHHHhhheeEEEeccceeecc
Confidence 999999999999999999999999999999999999999999987 58999999995 6899999999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.+++
T Consensus 229 sld~v 233 (249)
T COG4674 229 SLDEV 233 (249)
T ss_pred cHHHh
Confidence 86643
No 323
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1e-35 Score=339.26 Aligned_cols=203 Identities=21% Similarity=0.250 Sum_probs=168.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ++.+|+|+|++++|||.+||+||||||||||+++|+|.+++. +|+|.+||.+...
T Consensus 322 ~i~~~~v~f~y~~-----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~ 393 (547)
T PRK10522 322 TLELRNVTFAYQD-----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPE 393 (547)
T ss_pred eEEEEEEEEEeCC-----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHH
Confidence 4789999998862 246999999999999999999999999999999999999884 9999999997542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++||+|++.+++. |++|| . .. ..++.+++.++.+++.+..+..-|......||||||||++
T Consensus 394 ~~~~~i~~v~q~~~lf~~-ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~ 459 (547)
T PRK10522 394 DYRKLFSAVFTDFHLFDQ-LLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLA 459 (547)
T ss_pred HHhhheEEEecChhHHHH-hhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHH
Confidence 25679999999988875 77776 1 01 1234577888899887644321110012479999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||++++|++|+|||||++||+.++..+.+.|.+..+ .|+|+|+++|++ +..+.+|++++|++|+++..
T Consensus 460 lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 460 LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999987654 589999999997 45678999999999999866
No 324
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=309.36 Aligned_cols=226 Identities=24% Similarity=0.361 Sum_probs=196.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG--NVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~i~~~g~~~~--- 76 (661)
-|..+||++.+.. .+....++++|||++++||.+||+|.||||||-..+.+.|+++. ....+|+|.++|++.-
T Consensus 6 lL~v~nLsV~f~~--~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 6 LLSIRNLSVAFHQ--EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred ceeeeccEEEEec--CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 3789999999875 23457899999999999999999999999999999999999864 3456799999998631
Q ss_pred ------cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 77 ------LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
.+-.+|++++|+| .+.|-.|+.+.+.-..+++ .++++++.++++.++|+.+|+.+...++- .++++||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~--~yPHeLS 159 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLD--AYPHELS 159 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhh--hCCcccC
Confidence 1235799999998 5788889999998887765 46788889999999999999987665543 3567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||||||.||.||+.+|++||.||||+.||..-+.+|+++|++|.++ |..++++|||. ..+.+++|+|++|.+|++++
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEee
Confidence 99999999999999999999999999999999999999999999775 99999999996 57889999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|++++.
T Consensus 239 ~~~t~~l 245 (534)
T COG4172 239 TGTTETL 245 (534)
T ss_pred cCcHHHH
Confidence 9987653
No 325
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.3e-35 Score=338.69 Aligned_cols=208 Identities=21% Similarity=0.249 Sum_probs=170.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++.. .+..+.+|+|+|+++++||.+||+||||||||||+++|+|.++++ +|+|.+||.+.+.
T Consensus 337 ~i~~~~v~f~y~~~-~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 337 SIELKDVHMNPKAP-EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRD 412 (555)
T ss_pred eEEEEEEEEEeCCC-CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 47899999998631 111246999999999999999999999999999999999999884 8999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-ccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN-WHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~-~~~~~LSgGerqRv 155 (661)
.++.++||+|++.+++. |++||.. + +..++.++++++.+++.+..+...+. .....||||||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 24679999999988876 7888731 1 11234577889999998766554322 22357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK-NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~-~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
+|||+++.+|++++|||||++||+.+...+.+.+. .+..+|+|+|+++|+++ ..+.+|+|++|++|+++..
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998764 56567899999999973 5678999999999999754
No 326
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6e-36 Score=372.97 Aligned_cols=212 Identities=21% Similarity=0.318 Sum_probs=178.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.|+. ..+.+|+|+|++++|||.+||+|+||||||||+++|.|++++. +|+|.+||.+.+.
T Consensus 1234 ~I~f~nVsf~Y~~----~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~ 1306 (1495)
T PLN03232 1234 SIKFEDVHLRYRP----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLT 1306 (1495)
T ss_pred cEEEEEEEEEECC----CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHH
Confidence 3899999999853 1356999999999999999999999999999999999999884 8999999988532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.+++++|||||+.+|+. |+||||.+.. ..+++ .+.++++..++. +-.|+.+|+ ....|||
T Consensus 1307 ~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSg 1374 (1495)
T PLN03232 1307 DLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSV 1374 (1495)
T ss_pred HHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCH
Confidence 25789999999999987 9999997531 23333 355666665553 345777775 2356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||+|++|++|++++.|
T Consensus 1375 GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~G~ivE~G 1451 (1495)
T PLN03232 1375 GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSSGQVLEYD 1451 (1495)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999875 4799999999973 44559999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 1452 t~~eLl 1457 (1495)
T PLN03232 1452 SPQELL 1457 (1495)
T ss_pred CHHHHH
Confidence 977643
No 327
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.9e-36 Score=371.47 Aligned_cols=212 Identities=22% Similarity=0.322 Sum_probs=179.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|+. ..+.+|+|+|++|+|||.+||+|+||||||||+++|.|++++. +|+|.+||.+.+.
T Consensus 1237 ~I~f~nVsf~Y~~----~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~ 1309 (1622)
T PLN03130 1237 SIKFEDVVLRYRP----ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLM 1309 (1622)
T ss_pred cEEEEEEEEEeCC----CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHH
Confidence 4899999999853 1246999999999999999999999999999999999999884 8999999998542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++++++||||+.+|+. |+||||.+.. ..++++ +.++++..++ .+-.|+.+|+ ....|||
T Consensus 1310 ~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSg 1377 (1622)
T PLN03130 1310 DLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSV 1377 (1622)
T ss_pred HHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccC-CCCCCCH
Confidence 25789999999999987 9999997541 223333 5555555554 3456777875 3357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|+++ ....||+|++|++|++++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~IAHRL~--tI~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLN--TIIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEeCChH--HHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999854 799999999974 34559999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 1455 t~~eLl 1460 (1622)
T PLN03130 1455 TPENLL 1460 (1622)
T ss_pred CHHHHH
Confidence 988764
No 328
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.2e-35 Score=334.70 Aligned_cols=199 Identities=25% Similarity=0.314 Sum_probs=171.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.+.. ..|+++|+++++||+++|+||||||||||+++|+|.+++. +|+|.++ ..
T Consensus 340 ~l~~~~ls~~~~~-------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~--------~~ 401 (590)
T PRK13409 340 LVEYPDLTKKLGD-------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE--------LK 401 (590)
T ss_pred EEEEcceEEEECC-------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------ee
Confidence 3678888876631 2489999999999999999999999999999999999874 8999886 14
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|+..+.+.+||+|++.+.... ... ...++++++.+||.+..|+.++ .|||||||||+||++|
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL 468 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACL 468 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHH
Confidence 89999998888899999999875321 111 2356889999999988888875 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+ .++..++|++++|++ ++...|...+
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~~-~~~~~g~~~~ 539 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFEG-EPGKHGHASG 539 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcC-cceeeeecCC
Confidence 9999999999999999999999999999999875 89999999996 578899999999965 8877777543
No 329
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.3e-35 Score=367.58 Aligned_cols=212 Identities=20% Similarity=0.308 Sum_probs=179.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+|+|+++.|++ ..+.+|+||||+|+|||.+||+|+||||||||+++|.|++++. +|+|.+||.+.+.
T Consensus 1308 ~I~f~nVsf~Y~~----~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE----GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred eEEEEEEEEEeCC----CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHH
Confidence 4889999999863 1245999999999999999999999999999999999999884 8999999998532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++|||||+.+|+. ||+|||... ...++ +.+.++++..||.+ -.|+.+|+ ....|||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSg 1448 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSV 1448 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCH
Confidence 35789999999999987 999999632 12333 34667777777654 45777875 3356999
Q ss_pred HHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTR-PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~-P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
|||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|||+++|++ +....||+|++|++|++++.
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEE
Confidence 999999999999996 89999999999999999999999999864 479999999997 45677999999999999999
Q ss_pred cCCCChh
Q 045930 229 GEAKSAP 235 (661)
Q Consensus 229 G~~~~~~ 235 (661)
|++++..
T Consensus 1526 Gt~~eLl 1532 (1560)
T PTZ00243 1526 GSPRELV 1532 (1560)
T ss_pred CCHHHHH
Confidence 9977643
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.9e-35 Score=333.98 Aligned_cols=200 Identities=23% Similarity=0.353 Sum_probs=167.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|..++. +|+|.+++. ..
T Consensus 324 ~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 388 (556)
T PRK11819 324 VIEAENLSKSFG------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------VK 388 (556)
T ss_pred EEEEEeEEEEEC------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 378889988774 256999999999999999999999999999999999999874 899998542 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHH
Q 045930 82 VAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 82 i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+||++|++ .+++.+||+|++.+...... .... ...++++++.+||.+ ..++.++ +|||||||||+||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHHHHHHHHHH
Confidence 99999996 78889999999998653221 1111 123457899999964 5677775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-CeEE-EecC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG-GETV-YFGE 230 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~-G~~v-~~G~ 230 (661)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+ .++..+||++++|++ |+++ +.|+
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCC
Confidence 9999999999999999999999999999999873 4 899999996 578899999999985 7876 3443
No 331
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.1e-35 Score=367.05 Aligned_cols=212 Identities=17% Similarity=0.259 Sum_probs=178.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|+. ..+.+|+|||++++|||.+||+|+||||||||+++|.|++++. +|+|.+||.+.+.
T Consensus 1284 ~I~f~nVsf~Y~~----~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~ 1356 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE----DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLH 1356 (1522)
T ss_pred cEEEEEEEEEeCC----CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHH
Confidence 4899999999863 1246999999999999999999999999999999999999884 8999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.+++++|||||+.+|+. |+||||.... ..++++ +.++++..++. +-.|+.+|+ ....|||
T Consensus 1357 ~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSg 1424 (1522)
T TIGR00957 1357 DLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAE-GGENLSV 1424 (1522)
T ss_pred HHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCH
Confidence 26789999999999987 9999996321 233433 55666666654 346777775 2356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++ ....+|+|++|++|++++.|
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999875 4799999999973 45569999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 1502 ~~~eLl 1507 (1522)
T TIGR00957 1502 APSNLL 1507 (1522)
T ss_pred CHHHHH
Confidence 987654
No 332
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-35 Score=295.44 Aligned_cols=189 Identities=26% Similarity=0.378 Sum_probs=165.3
Q ss_pred eEEEEEEEEEeecCCc-cc--ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc
Q 045930 2 YLVWEEVTVVVPNFGS-GP--TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~-~~--~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~ 78 (661)
-|+.+||+..++.... +. ...+++||||++++||+++|+|+||||||||-++|.|+.+| ++|+|.++|++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhc
Confidence 4789999998875221 11 24799999999999999999999999999999999999998 499999999874321
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
. +++..+++.++|+.+||.. .+++.. +++|||||||+.|
T Consensus 81 ~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----helSGGQrQRi~I 120 (268)
T COG4608 81 S-----------------------------------KEERRERVLELLEKVGLPEEFLYRYP-----HELSGGQRQRIGI 120 (268)
T ss_pred c-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----cccCchhhhhHHH
Confidence 1 3456678999999999864 677765 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||||+.+|+++++|||||.||...+.+++++|+++.++ |.|.++++||. +.+..++||+.+|..|++|+.|+.++.
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~ 197 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEV 197 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHH
Confidence 99999999999999999999999999999999999876 99999999996 578899999999999999999997754
No 333
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.6e-35 Score=332.24 Aligned_cols=200 Identities=23% Similarity=0.352 Sum_probs=166.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.+++. ..
T Consensus 322 ~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~~ 386 (552)
T TIGR03719 322 VIEAENLSKGFG------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------VK 386 (552)
T ss_pred EEEEeeEEEEEC------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------eE
Confidence 378889988774 256999999999999999999999999999999999998874 899998542 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHH
Q 045930 82 VAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 82 i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+||++|++ .+++.+||.|++.+..... ..... +.+++++++.+||.+ ..++.++ .|||||||||+||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHHHHHHHHHH
Confidence 99999996 4788899999999864321 11111 223567899999964 5677775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-CeEE-EecC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG-GETV-YFGE 230 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~-G~~v-~~G~ 230 (661)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+ ..+..+||++++|++ |+++ +.|+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCC
Confidence 9999999999999999999999999999999983 3 899999996 578899999999986 5776 4443
No 334
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.3e-35 Score=302.29 Aligned_cols=189 Identities=26% Similarity=0.377 Sum_probs=159.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEE-----------ECCeeccc-----c--cCeE
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL-----------LNGKKRRL-----D--YGGV 82 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~-----------~~g~~~~~-----~--~~~i 82 (661)
+.+|+|+| .+++||+++|+|||||||||||++|+|++++. +|+|. ++|.+... . ...+
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 89 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKV 89 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhHHhhhcccce
Confidence 35999999 59999999999999999999999999999884 89996 77765321 1 1247
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|+..+++. ++.+++.+... ..+.++.+.++++.+||++..++.++ .||||||||++||++|+
T Consensus 90 ~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~ 155 (255)
T cd03236 90 IVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNID-----QLSGGELQRVAIAAALA 155 (255)
T ss_pred eeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHH
Confidence 899999888774 88888876421 22334668899999999988877664 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
.+|+++++||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|+ |++.+.|
T Consensus 156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999988899999999996 57788999999995 5566544
No 335
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=295.77 Aligned_cols=205 Identities=25% Similarity=0.379 Sum_probs=178.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----ccCeEEEEe-cCCCCCCCCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----DYGGVAYVT-QENIMLGTLT 96 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~~~~i~yv~-Q~~~l~~~lT 96 (661)
.+++|+||+|++|++++++|||||||||+||+|+|++.| .+|.|.+||...-. .-+.+++|+ |.-.+.-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p---~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP---TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc---CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 589999999999999999999999999999999999988 49999999985421 124566664 4455666667
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
+.|.+.....+. ..+.++.+++.+.+.+.++|+...+..+ |.||-|||.|+.+|.+|+++|+||||||||=|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888877654442 5678889999999999999998888876 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHH
Q 045930 177 LDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFF 238 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f 238 (661)
||..++..+.+.|++..++ +.||+.+||+. +.+.++||||++++.|+++|+|+.++..+-|
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999864 99999999996 5899999999999999999999988766544
No 336
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.2e-35 Score=361.95 Aligned_cols=213 Identities=23% Similarity=0.391 Sum_probs=171.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEEC-Ceecc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLN-GKKRR---- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~-g~~~~---- 76 (661)
.++++|+++.++. ++.+++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.++ |.+..
T Consensus 382 ~I~~~nVsf~Y~~---~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHYDT---RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEcCC---CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCH
Confidence 4789999999863 12356999999999999999999999999999999999999884 9999995 55532
Q ss_pred -cccCeEEEEecCCCCCCCCCHHHHHHHHHhc-CC---------CCC------C--------------------------
Q 045930 77 -LDYGGVAYVTQENIMLGTLTVRETIAYSAHL-RL---------PSN------M-------------------------- 113 (661)
Q Consensus 77 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l-~~---------~~~------~-------------------------- 113 (661)
..++.+|||+|++.+|+. ||+||+.++... +. +.. .
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 125679999999999975 999999986310 00 000 0
Q ss_pred ------CHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 045930 114 ------NNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180 (661)
Q Consensus 114 ------~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~ 180 (661)
.....++.+.++++.+++.+ ..||.+|. ....||||||||++|||||+.+|+||||||||++||+.
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 00011245677777776654 34677765 35679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 181 AAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 181 ~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
++..+.+.|+++++ +|+|+|+++|+++ .+ +.||+|++|++|+
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCCc
Confidence 99999999999976 5899999999974 44 7899999999873
No 337
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=314.16 Aligned_cols=214 Identities=27% Similarity=0.434 Sum_probs=180.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.+. ++|++|+||||++.||+.+|++||||+||||++++|-...+- .+|.|.+||++.+.
T Consensus 537 ~i~fsnvtF~Y~-----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~sGsI~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 537 KIEFSNVTFAYD-----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NSGSITIDGQDIRNVTQS 608 (790)
T ss_pred eEEEEEeEEecC-----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cCceEEEcCchHHHHHHH
Confidence 478999999875 368899999999999999999999999999999999998875 38999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HH-HHcCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE--AI-TEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~--~l-~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.||.||||..+|++ |+..|+.|+- | +.+.+|..+.... += +.+++.+-.+++||+.+. .|||||||
T Consensus 609 SLRs~IGVVPQDtvLFNd-TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEKQ 681 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFND-TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEKQ 681 (790)
T ss_pred HHHHhcCcccCcceeecc-eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcchh
Confidence 35789999999999977 8988988862 2 3345554333222 22 336888999999998443 48999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+|||+++++|.+++|||.||+||..+...|...|.+++. |+|.|++.|..+ ..--+|.|+++++|++++.|.-++
T Consensus 682 RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS--TivnAD~ILvi~~G~IvErG~Hee 758 (790)
T KOG0056|consen 682 RVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS--TIVNADLILVISNGRIVERGRHEE 758 (790)
T ss_pred hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh--heecccEEEEEeCCeEeecCcHHH
Confidence 99999999999999999999999999999999999999986 688888999975 334589999999999999997544
No 338
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.2e-34 Score=360.81 Aligned_cols=211 Identities=23% Similarity=0.322 Sum_probs=178.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|+. ..+.+|+|||++|+|||.+||+|+||||||||+++|.|+++ .+|+|.+||.+...
T Consensus 1217 ~I~f~nVs~~Y~~----~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE----AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred eEEEEEEEEEeCC----CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHH
Confidence 4889999999863 23579999999999999999999999999999999999985 28999999998542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.+++++||||++.+|+. ||||||.... ..++ +.+.++++..+|.+ -.|+.+|+ ....|||
T Consensus 1289 ~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSg 1356 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSN 1356 (1490)
T ss_pred HHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCH
Confidence 25789999999999987 9999996321 1233 45677777777743 46777775 2356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+|||||++||..+...|.+.|++..+ ++|||+++|.++ ....||+|++|++|++++.|
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVE--ALLECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998754 799999999973 45569999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 1434 ~p~~Ll 1439 (1490)
T TIGR01271 1434 SIQKLL 1439 (1490)
T ss_pred CHHHHH
Confidence 987654
No 339
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.5e-34 Score=284.10 Aligned_cols=221 Identities=23% Similarity=0.258 Sum_probs=194.3
Q ss_pred eEEEEEEEEEeecCC------------------cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 045930 2 YLVWEEVTVVVPNFG------------------SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV 63 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~------------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~ 63 (661)
.+..+|++..++.+. +.....+|+||||++++||.+||+|+|||||||||++|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 567888888766431 123457999999999999999999999999999999999999994
Q ss_pred eeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 045930 64 MTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143 (661)
Q Consensus 64 ~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 143 (661)
+|+|.++|+-.....-.+ .+.|.+|.+||+.+.+.+. ++++++.+++++++++.-+|.+..|.++.
T Consensus 81 -~G~v~v~G~v~~li~lg~-------Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvk--- 146 (249)
T COG1134 81 -SGKVKVTGKVAPLIELGA-------GFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVK--- 146 (249)
T ss_pred -CceEEEcceEehhhhccc-------CCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchh---
Confidence 999999997532211112 3457899999999987763 67899999999999999999999999985
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.+|.||+-|++.|.+.-.+|++|++||-.+-.|+.=+++..+.++++.++++|||+++|++ ..+.++||++++|++|
T Consensus 147 --tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 147 --TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHG 223 (249)
T ss_pred --hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCC
Confidence 5999999999999999999999999999999999999999999999988889999999996 5899999999999999
Q ss_pred eEEEecCCCChhHHHHhc
Q 045930 224 ETVYFGEAKSAPTFFAEA 241 (661)
Q Consensus 224 ~~v~~G~~~~~~~~f~~~ 241 (661)
++++.|+++++.++|.+.
T Consensus 224 ~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 224 QIRMEGSPEEVIPAYEED 241 (249)
T ss_pred EEEEcCCHHHHHHHHHHh
Confidence 999999999999988764
No 340
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.3e-34 Score=280.11 Aligned_cols=160 Identities=24% Similarity=0.326 Sum_probs=134.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHH
Q 045930 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 19 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
..+.+|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|......++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLPKFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCcccccccccEEEEhH-----------
Confidence 35679999999999999999999999999999999963 278898888743222344778776
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTR--PQLLFLDEPTS 175 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~--P~lllLDEPts 175 (661)
.+.++.++|.. ..++.+ +.||||||||++||++|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 24567788865 366665 46999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 176 GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||+.++..+.+.|++++++|+|||+++|++. ++ +.+|++++|.+|+..+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKS 168 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCC
Confidence 99999999999999999878999999999974 44 6899999997655433
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=332.70 Aligned_cols=199 Identities=28% Similarity=0.437 Sum_probs=167.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..++. +|+|.+++. ..
T Consensus 312 ~l~~~~l~~~y~------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------~~ 376 (638)
T PRK10636 312 LLKMEKVSAGYG------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------IK 376 (638)
T ss_pred eEEEEeeEEEeC------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------EE
Confidence 377889988774 256999999999999999999999999999999999999874 899998742 25
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHH
Q 045930 82 VAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 82 i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
+||++|+. .+.+..||.+++.- .. .....+++.++++.+++. +..++.++ .|||||||||+||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~La 442 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLVLA 442 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHHHH
Confidence 89999974 35566788777531 11 112345688999999996 46788775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE-EecCCCC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAKS 233 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v-~~G~~~~ 233 (661)
++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+ ..+..+||++++|++|+++ +.|+.++
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~ 514 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLED 514 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHH
Confidence 9999999999999999999999999999999987 34 999999996 6788999999999999997 7787654
No 342
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=4.7e-34 Score=269.73 Aligned_cols=144 Identities=31% Similarity=0.439 Sum_probs=131.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+ +.+
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~------~~i 65 (144)
T cd03221 1 IELENLSKTYGG------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST------VKI 65 (144)
T ss_pred CEEEEEEEEECC------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe------EEE
Confidence 468899987742 3699999999999999999999999999999999999987 4899999985 468
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++| ||+||+||++||++|+
T Consensus 66 ~~~~~-----------------------------------------------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 66 GYFEQ-----------------------------------------------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred EEEcc-----------------------------------------------------------CCHHHHHHHHHHHHHh
Confidence 99998 8999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
.+|+++++||||+|||+.++..+.+.|+++ ++|||+++|++ +++.+++|++++|++|+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999987 47999999996 57888999999999985
No 343
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=278.16 Aligned_cols=218 Identities=28% Similarity=0.416 Sum_probs=178.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
+..+|+++.+.+ +....+++|+++|+++.+|+++.|+|.||||||||+|+|+|.+.+ .+|+|.++|.+...
T Consensus 2 i~~~~~~~~f~~-g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~---t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 2 ISLSNATKTFFK-GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP---TSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred cccccceeeecC-CChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc---CCceEEECceecccCCHHH
Confidence 355677776643 444568899999999999999999999999999999999999988 49999999987642
Q ss_pred ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCccccccCHH
Q 045930 78 DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNN---EEITDVIEEAITE--MGLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~--lgL~~~~d~~vg~~~~~~LSgG 150 (661)
+...++-|+||+ ...+.||+.||+..+..-.-.++.+. +..++.-.+-++. +||++..++.+|- ||||
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGG 152 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGG 152 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccch
Confidence 224578899997 46899999999998754211122222 2223333444555 4778999999985 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||-++++.|.++.|+||+|||-|++|||.++..+++.=.++.++ +.|.+++||.. ....++-+|+++|++|+||.+-
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999999999999999999999999999998765 78999999996 5789999999999999999764
Q ss_pred C
Q 045930 230 E 230 (661)
Q Consensus 230 ~ 230 (661)
.
T Consensus 232 ~ 232 (263)
T COG1101 232 T 232 (263)
T ss_pred c
Confidence 3
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.1e-34 Score=328.46 Aligned_cols=198 Identities=24% Similarity=0.354 Sum_probs=166.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ ++.+|+|+|+++++|++++|+|||||||||||++|+|.+++ .+|+|.+ |.. -.
T Consensus 319 ~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p---~~G~i~~-~~~-----~~ 383 (635)
T PRK11147 319 VFEMENVNYQID------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA---DSGRIHC-GTK-----LE 383 (635)
T ss_pred eEEEeeeEEEEC------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEE-CCC-----cE
Confidence 378889998774 25699999999999999999999999999999999999887 4899998 432 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHH
Q 045930 82 VAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 82 i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.++ .|||||||||+||+
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~la~ 453 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLLAR 453 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHHHH
Confidence 99999985 5889999999998753210 111 1234578899999995 56788775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEe
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS-GGETVYF 228 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~-~G~~v~~ 228 (661)
+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||. ..+..+||++++++ +|+++.+
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEc
Confidence 999999999999999999999999999999876 45999999995 57889999999998 7997643
No 345
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=343.87 Aligned_cols=221 Identities=26% Similarity=0.455 Sum_probs=199.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
+..++++..+.. .+.+++++|+.|++||+.+++|+|||||||++|+|+|..++ .+|++.++|.....
T Consensus 565 ~~~~~L~k~y~~-----~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~---t~G~a~i~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 565 LVLNNLSKVYGG-----KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP---TSGEALIKGHDITVSTDFQ 636 (885)
T ss_pred EEEcceeeeecc-----hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC---CcceEEEecCccccccchh
Confidence 345566665542 11289999999999999999999999999999999999988 48999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.+||+||+|.+.+.+|.||++.+.+++| +..+++.++.++.+++.+||.+.+|+.++. +|||+|||++
T Consensus 637 ~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~-----ySgG~kRkLs 708 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRT-----YSGGNKRRLS 708 (885)
T ss_pred hhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhh-----CCCcchhhHH
Confidence 3567999999999999999999999999987 567788888999999999999999999875 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
+|.|++.+|++++|||||+|+||.++..+.++++++.++|+.||.|||.. +|...+|||+.+|.+|++...|++++.+.
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999999999999999999999999999888999999995 79999999999999999999999998887
Q ss_pred HHHh
Q 045930 237 FFAE 240 (661)
Q Consensus 237 ~f~~ 240 (661)
.|..
T Consensus 788 rfG~ 791 (885)
T KOG0059|consen 788 RYGS 791 (885)
T ss_pred hcCC
Confidence 6643
No 346
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.7e-34 Score=276.34 Aligned_cols=156 Identities=26% Similarity=0.411 Sum_probs=135.2
Q ss_pred EEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEE
Q 045930 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYV 85 (661)
Q Consensus 6 ~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv 85 (661)
.|+++.+. ++.+++|+ +++++||+++|+||||||||||+|+|+|++++. +|+|.++|.. ++|+
T Consensus 4 ~~l~~~~~------~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~ 66 (177)
T cd03222 4 PDCVKRYG------VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYK 66 (177)
T ss_pred CCeEEEEC------CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEE
Confidence 46776653 25688885 899999999999999999999999999999874 8999999853 7888
Q ss_pred ecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCC
Q 045930 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRP 165 (661)
Q Consensus 86 ~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P 165 (661)
+|+.. ||||||||++||++|+.+|
T Consensus 67 ~q~~~--------------------------------------------------------LSgGq~qrv~laral~~~p 90 (177)
T cd03222 67 PQYID--------------------------------------------------------LSGGELQRVAIAAALLRNA 90 (177)
T ss_pred cccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcCC
Confidence 88532 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCchHHHhhcCeEEEEeCCeEEEe--cCCCChh
Q 045930 166 QLLFLDEPTSGLDSAAAFFVVKILKNIAHDG-RTIISSIHQPSSEVFALFDDLFLLSGGETVYF--GEAKSAP 235 (661)
Q Consensus 166 ~lllLDEPtsGLD~~~~~~i~~~L~~la~~g-~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~--G~~~~~~ 235 (661)
++++|||||+|||+.++..+.+.|+++++++ .|||+++|++ .++.++||++++|+++-.++. |++..+.
T Consensus 91 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 91 TFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 9999999999999999999999999998775 9999999996 578889999999998766655 6655433
No 347
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-34 Score=262.85 Aligned_cols=191 Identities=25% Similarity=0.417 Sum_probs=167.8
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---c
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---L 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~ 77 (661)
+.++.+|++...+ +..+|.|+|++|.+||++-|||||||||||||..+.|.+.+....+|++++|++... .
T Consensus 1 ~~l~l~nvsl~l~------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa 74 (213)
T COG4136 1 GMLCLKNVSLRLP------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA 74 (213)
T ss_pred CceeeeeeeecCC------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch
Confidence 4678899986543 467999999999999999999999999999999999999888889999999998754 2
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++++|..+||+.+||.++|.+|+.|+. |.+...+.+++.++..+++.||+...++-.. .||||||-||++
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----tlSGGQrARvaL 145 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDPA-----TLSGGQRARVAL 145 (213)
T ss_pred hhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcChh-----hcCcchHHHHHH
Confidence 4678999999999999999999999874 4445555677789999999999998888664 699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCEEEEEecCC
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN-IAHDGRTIISSIHQP 206 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~-la~~g~tvi~s~Hq~ 206 (661)
-|+|+..|+.++||||+|.||.+-+.+..+..-. +...|..+|.+|||.
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 9999999999999999999999999999887654 444599999999995
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=6.9e-34 Score=329.73 Aligned_cols=197 Identities=25% Similarity=0.348 Sum_probs=160.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.+++ ++.+
T Consensus 452 i~~~nv~~~~~~-----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~i 517 (659)
T TIGR00954 452 IKFENIPLVTPN-----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGKL 517 (659)
T ss_pred EEEEeeEEECCC-----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCcE
Confidence 788999987642 246999999999999999999999999999999999998773 79998764 3569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC----ccccccCHHHHHHHHHH
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN----WHWRGISGGEKKRLSIA 158 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~----~~~~~LSgGerqRvsIa 158 (661)
+||+|++.+++. |++||+.+........ .....+++++++++.+||.+..++..|- .....||||||||++||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 999999988887 9999998754221000 0011134578889999998766553321 12357999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
|+|+.+|++++|||||+|||+.+...+.+.+++ .|+|+|+++|+++ ..+.+|++++|+
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 999999999999999999999999999998876 3899999999974 458899999997
No 349
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.2e-33 Score=326.13 Aligned_cols=201 Identities=23% Similarity=0.378 Sum_probs=163.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.+++. ..
T Consensus 508 ~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p---~~G~I~~~~~------~~ 573 (718)
T PLN03073 508 IISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP---SSGTVFRSAK------VR 573 (718)
T ss_pred eEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCceEEECCc------ee
Confidence 3788999988742 24699999999999999999999999999999999999987 4899998752 35
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
+||++|+. ...+++.++.........+ ... ++++.++++.+|+.+ ..++.++ .|||||||||+||++
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~-----~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCcc-----ccCHHHHHHHHHHHH
Confidence 99999985 3455666664332211111 111 346788999999974 6677664 599999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE-EecCCC
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAK 232 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v-~~G~~~ 232 (661)
|+.+|++|||||||+|||+.++..+++.|++. +| |||++|||+ ..+..+||++++|++|+++ +.|+.+
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFH 710 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 99999999999999999999999998888765 34 999999996 5788999999999999998 677644
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=324.86 Aligned_cols=203 Identities=26% Similarity=0.400 Sum_probs=163.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|+++||++.++ .+.+|+||||+|++||++||+||||||||||||+|+|..+++ +|+|.++|.. .+
T Consensus 2 i~i~nls~~~g------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~------~i 66 (638)
T PRK10636 2 IVFSSLQIRRG------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW------QL 66 (638)
T ss_pred EEEEEEEEEeC------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC------EE
Confidence 78999999885 257999999999999999999999999999999999998874 8999998742 48
Q ss_pred EEEecCCCCCCCCCHHHHHHHHH-----------------------hcCC-CCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 045930 83 AYVTQENIMLGTLTVRETIAYSA-----------------------HLRL-PSNMNNEEITDVIEEAITEMGLE-DCADR 137 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~-----------------------~l~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~d~ 137 (661)
+|++|++... ..|+.+.+.-.. .+.. .......+.+.+++++++.+|+. +..++
T Consensus 67 ~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 145 (638)
T PRK10636 67 AWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER 145 (638)
T ss_pred EEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcC
Confidence 8999865333 246555443110 0000 00001112346788999999997 57788
Q ss_pred cccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 138 ~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||. ..+..+||++
T Consensus 146 ~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i 216 (638)
T PRK10636 146 PVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKI 216 (638)
T ss_pred chh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEE
Confidence 776 49999999999999999999999999999999999999999998876 56999999996 5788999999
Q ss_pred EEEeCCeEE-EecC
Q 045930 218 FLLSGGETV-YFGE 230 (661)
Q Consensus 218 ~lL~~G~~v-~~G~ 230 (661)
++|++|+++ |.|+
T Consensus 217 ~~L~~G~i~~~~g~ 230 (638)
T PRK10636 217 IHIEQQSLFEYTGN 230 (638)
T ss_pred EEEeCCEEEEecCC
Confidence 999999986 5554
No 351
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-33 Score=350.50 Aligned_cols=206 Identities=25% Similarity=0.358 Sum_probs=168.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.++. .+++.+|+|+|+++++||.++|+||||||||||+++|.|.+++. +|.+. ..++.
T Consensus 614 ~I~~~~vsF~y~~---~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~-------~~~~~ 680 (1495)
T PLN03232 614 AISIKNGYFSWDS---KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV-------VIRGS 680 (1495)
T ss_pred cEEEEeeEEEcCC---CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE-------EecCc
Confidence 4789999998863 12357999999999999999999999999999999999999873 66542 12457
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSgGerqR 154 (661)
++||+|++.+++. |++|||.|+.. .++ ++++++++..+| .+-.+|.+|+.+ ..||||||||
T Consensus 681 Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQR 748 (1495)
T PLN03232 681 VAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQR 748 (1495)
T ss_pred EEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHH
Confidence 9999999999976 99999998631 223 345555555554 344578888643 4699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI-LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~-L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||||+.++|+|++||||||+||+.++..+++. ++.+ .+|+|+|++||+++ ....+|+|++|++|++++.|+.++
T Consensus 749 IaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999998765 5544 35899999999973 567899999999999999998765
Q ss_pred hh
Q 045930 234 AP 235 (661)
Q Consensus 234 ~~ 235 (661)
..
T Consensus 826 L~ 827 (1495)
T PLN03232 826 LS 827 (1495)
T ss_pred HH
Confidence 43
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-33 Score=349.82 Aligned_cols=205 Identities=24% Similarity=0.375 Sum_probs=170.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee-eEEEECCeecccccC
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT-GNVLLNGKKRRLDYG 80 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~-G~i~~~g~~~~~~~~ 80 (661)
.++++|+++.++. ..++.+|+|+|+++++||.++|+||||||||||+++|.|.+++ .+ |+|.+. +
T Consensus 614 ~I~~~nvsf~y~~---~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~---~~GG~I~l~--------~ 679 (1622)
T PLN03130 614 AISIKNGYFSWDS---KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP---RSDASVVIR--------G 679 (1622)
T ss_pred ceEEEeeEEEccC---CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc---CCCceEEEc--------C
Confidence 4789999998853 1235699999999999999999999999999999999999987 47 898753 4
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCHHHHH
Q 045930 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 81 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSgGerq 153 (661)
.++||+|++.+++. ||+|||.|+.. .+ +++++++++..+|. +-.+|.+|+.+ ..|||||||
T Consensus 680 ~Iayv~Q~p~Lfng-TIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQKQ 747 (1622)
T PLN03130 680 TVAYVPQVSWIFNA-TVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQKQ 747 (1622)
T ss_pred eEEEEcCccccCCC-CHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHHHH
Confidence 69999999999875 99999998632 22 24566666666654 34577888643 469999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK-ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
|++||||+.++|+|++||||||+||+.++..+++ .++.+. +|+|+|++||++ .....+|+|++|++|++++.|+.+
T Consensus 748 RIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 748 RVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999998875 566553 589999999997 467789999999999999999876
Q ss_pred Chh
Q 045930 233 SAP 235 (661)
Q Consensus 233 ~~~ 235 (661)
+..
T Consensus 825 eL~ 827 (1622)
T PLN03130 825 ELS 827 (1622)
T ss_pred HHH
Confidence 643
No 353
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.9e-33 Score=262.98 Aligned_cols=221 Identities=20% Similarity=0.331 Sum_probs=189.9
Q ss_pred EEEEEEEEEeecCC---cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---
Q 045930 3 LVWEEVTVVVPNFG---SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~---~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--- 76 (661)
|+.+||+.++.... ..+...+++.|||++++|+.+||+|.||||||||.++|+|..+| ++|+|++||++..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P---TsG~il~n~~~L~~~D 81 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC---CCceEEECCccccccc
Confidence 56778877654311 12335689999999999999999999999999999999999998 4999999998753
Q ss_pred --cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccccccCHHH
Q 045930 77 --LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 77 --~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~~~~LSgGe 151 (661)
.+.+.|-+++||+ .+.|.+.+.+-|....++ ...++.+++.+++-+.|+.+|| .+.+|-++ +.||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~-----~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANYYP-----HMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccccch-----hhcCchh
Confidence 2346799999997 477888888888877654 4567888889999999999998 45666655 4699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||||+.+|+|++.||..++||...+-+++++.-+|.++ |.+-|.++.+. ..+..+.|+|++|++|++|+.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999875 99999999996 58899999999999999999999
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
+.++
T Consensus 234 t~~v 237 (267)
T COG4167 234 TADV 237 (267)
T ss_pred hhhh
Confidence 8754
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.5e-33 Score=319.95 Aligned_cols=203 Identities=25% Similarity=0.343 Sum_probs=161.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ .+.+|+||||++++||+++|+|||||||||||++|+|..++. +|+|.++|.. .
T Consensus 3 ~l~i~~ls~~~~------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~------~ 67 (635)
T PRK11147 3 LISIHGAWLSFS------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL------I 67 (635)
T ss_pred EEEEeeEEEEeC------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC------E
Confidence 488999999885 256999999999999999999999999999999999998874 8999998631 3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHH------------------------------hcC--CCCCCCHHHHHHHHHHHHHHc
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSA------------------------------HLR--LPSNMNNEEITDVIEEAITEM 129 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~------------------------------~l~--~~~~~~~~~~~~~v~~~l~~l 129 (661)
++|++|++......+|.+++..+. .+. +. .....+.+.+++++++.+
T Consensus 68 ~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l 146 (635)
T PRK11147 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQL 146 (635)
T ss_pred EEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhC
Confidence 678888654333456666542110 000 00 000112345788999999
Q ss_pred CCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 045930 130 GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE 209 (661)
Q Consensus 130 gL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~ 209 (661)
|+.. ++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++|||+ ..
T Consensus 147 gl~~--~~~~~-----~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~ 215 (635)
T PRK11147 147 GLDP--DAALS-----SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SF 215 (635)
T ss_pred CCCC--CCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HH
Confidence 9963 66654 599999999999999999999999999999999999999999999873 5999999996 57
Q ss_pred HHhhcCeEEEEeCCeEE-EecCC
Q 045930 210 VFALFDDLFLLSGGETV-YFGEA 231 (661)
Q Consensus 210 i~~~~D~v~lL~~G~~v-~~G~~ 231 (661)
+..+||+|++|++|+++ |.|+.
T Consensus 216 l~~~~d~i~~L~~G~i~~~~g~~ 238 (635)
T PRK11147 216 IRNMATRIVDLDRGKLVSYPGNY 238 (635)
T ss_pred HHHhcCeEEEEECCEEEEecCCH
Confidence 88999999999999987 44653
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-32 Score=260.49 Aligned_cols=151 Identities=37% Similarity=0.614 Sum_probs=135.3
Q ss_pred EEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----cc
Q 045930 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DY 79 (661)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~ 79 (661)
++++++.++. +.+++++|+++++||+++|+||||||||||+++|+|.+++ ..|+|.++|.+... ..
T Consensus 2 ~~~~~~~~~~------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYGG------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeCC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHHHH
Confidence 5788887642 3699999999999999999999999999999999999887 38999999986432 13
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++| |||||+||++||+
T Consensus 73 ~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~~ 93 (157)
T cd00267 73 RRIGYVPQ-----------------------------------------------------------LSGGQRQRVALAR 93 (157)
T ss_pred hceEEEee-----------------------------------------------------------CCHHHHHHHHHHH
Confidence 56888888 8999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+++.+|++++|||||+|||..++..+.+.|+++++.++|+++++|++ +++...||+++++++|+
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 99999999999999999999999999999999987789999999996 57888899999999875
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.1e-33 Score=315.90 Aligned_cols=180 Identities=28% Similarity=0.425 Sum_probs=153.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEE-----------ECCeeccc-------ccCeE
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL-----------LNGKKRRL-------DYGGV 82 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~-----------~~g~~~~~-------~~~~i 82 (661)
..+|++++ .+++||++||+||||||||||||+|+|.++|+ .|+|. ++|++... ....+
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 46899999 99999999999999999999999999999885 89997 88875321 12346
Q ss_pred EEEecCCCCCCC---CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 83 AYVTQENIMLGT---LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 83 ~yv~Q~~~l~~~---lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
++.+|.....|. .||+|++... +.+++++++++.+||.+..|+.++ +|||||||||+||+
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~ 225 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAA 225 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHH
Confidence 666665443333 3999998631 224578999999999998999886 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
+|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++ +++..++|++++|.++
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999988 99999999996 5788999999999864
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.7e-32 Score=340.72 Aligned_cols=209 Identities=25% Similarity=0.388 Sum_probs=167.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.++. ..+.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++| .
T Consensus 636 ~i~~~~~~~~~~~----~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~---~~G~i~~~g--------~ 700 (1522)
T TIGR00957 636 SITVHNATFTWAR----DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVHMKG--------S 700 (1522)
T ss_pred cEEEEEeEEEcCC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc---CCcEEEECC--------E
Confidence 4788999988752 135699999999999999999999999999999999999987 489999987 4
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCccccccCHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIE--EAITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++||+|++.+++ .||+||+.|+.. .+.++.++.++ ++.+.++. .+-.+|.+|+. ...||||||||++||
T Consensus 701 i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 701 VAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRVSLA 772 (1522)
T ss_pred EEEEcCCccccC-CcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHHHHH
Confidence 899999998765 699999998632 22222222111 12233332 23345667653 467999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA--HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la--~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||++.+|++++|||||++||+.++..+.+.+.+.. .+|+|+|++||++. ....+|+|++|++|+++..|+.++..
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCeEEeeCCHHHHH
Confidence 99999999999999999999999999999997542 35799999999973 34559999999999999999876653
No 358
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-33 Score=290.05 Aligned_cols=215 Identities=29% Similarity=0.456 Sum_probs=178.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----L 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~ 77 (661)
+.|+++++.+. +.+++|+|+|+++++|+.+|++||||+||||++++|-..+.++ +|.|.++|++.+ .
T Consensus 263 v~F~~V~F~y~-----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~s 334 (497)
T COG5265 263 VAFINVSFAYD-----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334 (497)
T ss_pred EEEEEEEeecc-----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHH
Confidence 56788887764 4688999999999999999999999999999999999999885 999999998753 2
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHH--cCCCccccccccCccccccCHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++-||.||||..||.+ |...|+.|+- ...+.+|+.+.++.. +.. -.+.+..|+.||+.+. .||||||||
T Consensus 335 lR~aIg~VPQDtvLFND-ti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl-klSggekqr 407 (497)
T COG5265 335 LRRAIGIVPQDTVLFND-TIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL-KLSGGEKQR 407 (497)
T ss_pred HHHHhCcCcccceehhh-hHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee-eccCchHHH
Confidence 35679999999999876 8999998862 234555544433322 111 1467788999997432 489999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+|||+++++|+||++||.||.||..+...+...|++++ .|+|.+++.|..+ ..--+|+|++|++|++++.|.-++.
T Consensus 408 vaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls--ti~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 408 VAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS--TIIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred HHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh--hccCCceEEEeeCCEEEecCcHHHH
Confidence 999999999999999999999999999999999999998 4899999999975 3345899999999999999986554
Q ss_pred h
Q 045930 235 P 235 (661)
Q Consensus 235 ~ 235 (661)
+
T Consensus 485 l 485 (497)
T COG5265 485 L 485 (497)
T ss_pred H
Confidence 3
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-32 Score=260.35 Aligned_cols=188 Identities=27% Similarity=0.400 Sum_probs=162.8
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc--
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD-- 78 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~-- 78 (661)
|.|+-+||+.... .+.++.++||++.+||++-|.|||||||||||++|+|+..|. +|+|.++|.+....
T Consensus 1 ~~L~a~~L~~~R~------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~ 71 (209)
T COG4133 1 MMLEAENLSCERG------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRE 71 (209)
T ss_pred CcchhhhhhhccC------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchh
Confidence 3466677776543 468999999999999999999999999999999999999984 89999999875432
Q ss_pred --cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 79 --YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 79 --~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.+.+-|+-..+.+=+.|||.|||.|-..+.-. . ....+.+.++.+||....|.+++. ||-||||||+
T Consensus 72 ~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~----~~~~i~~Al~~vgL~g~~dlp~~~-----LSAGQqRRvA 140 (209)
T COG4133 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHGS--G----NAATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVA 140 (209)
T ss_pred hHHHHHHHhhccccccchhhHHHHHHHHHHHhCC--C----chhhHHHHHHHcCcccccccchhh-----cchhHHHHHH
Confidence 24577888888888999999999998775421 1 134588999999999999999874 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
|||-+++.+++.|||||+++||......+-..+..-+++|-.||.+||||..
T Consensus 141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999999999999999999998888889999999999853
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=3.5e-32 Score=254.70 Aligned_cols=213 Identities=25% Similarity=0.363 Sum_probs=165.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe---ecc---
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---KRR--- 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~---~~~--- 76 (661)
|+.++++..|.. .+-.+||||.+.|||+++|+|+|||||||||+||++++.|. .|+|.+... +..
T Consensus 7 L~V~~lsk~Yg~------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 7 LSVSGLSKLYGP------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred eeehhhhhhhCC------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhh
Confidence 455666655532 34678999999999999999999999999999999999884 899988643 221
Q ss_pred --------cccCeEEEEecCCC--CCC----CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 045930 77 --------LDYGGVAYVTQENI--MLG----TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142 (661)
Q Consensus 77 --------~~~~~i~yv~Q~~~--l~~----~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~ 142 (661)
..+..-|+|.|+|. +-. .-.+-|-++-... .....+++...++++++.++..+ + +.
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~------RHYG~iR~~a~~WL~~VEI~~~R---i-DD 147 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA------RHYGNIRAEAQDWLEEVEIDLDR---I-DD 147 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh------hhhhhHHHHHHHHHHhcccCccc---c-cC
Confidence 11345799999863 222 2233444332111 11234667788999999875321 1 12
Q ss_pred cccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 143 ~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
.++..|||++||+.|||-|++.|+++|+||||.|||..-+..+++.++.|.++ |.+++++|||. ..+.-++||.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 45789999999999999999999999999999999999999999999999876 99999999996 45667899999999
Q ss_pred CCeEEEecCCCChh
Q 045930 222 GGETVYFGEAKSAP 235 (661)
Q Consensus 222 ~G~~v~~G~~~~~~ 235 (661)
+|++++.|-++.++
T Consensus 227 ~g~vve~GLTDrvL 240 (258)
T COG4107 227 QGQVVESGLTDRVL 240 (258)
T ss_pred CCCEeccccccccc
Confidence 99999999877654
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=298.87 Aligned_cols=204 Identities=29% Similarity=0.422 Sum_probs=169.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++.+|++..++ .+.+++|+|+++.+|+.+||+|+||||||||||+|+|...+. +|+|...+. -+
T Consensus 3 ~i~~~~ls~~~g------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~~ 67 (530)
T COG0488 3 MITLENLSLAYG------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------LR 67 (530)
T ss_pred eEEEeeeEEeeC------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------ce
Confidence 578899999884 478999999999999999999999999999999999999874 899987532 35
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcC-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCcc
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLR-------------LPSN--------------MNNEEITDVIEEAITEMGLEDC 134 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~ 134 (661)
++|++|++.+.+..||.+.+.-+..-. ++.. ...-+.+.++..++..+|+.+.
T Consensus 68 v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 68 VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred EEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 999999999999999999887543200 0000 0001123577888899999877
Q ss_pred ccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 045930 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF 214 (661)
Q Consensus 135 ~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~ 214 (661)
++.++ .||||||.||++|++|+.+|++|+|||||+.||..+..-+-+.|++. +| |||++||| +..+-+.|
T Consensus 148 -~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~ 217 (530)
T COG0488 148 -DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVA 217 (530)
T ss_pred -cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHh
Confidence 88876 49999999999999999999999999999999999999999998854 46 99999999 78899999
Q ss_pred CeEEEEeCCeEE-EecC
Q 045930 215 DDLFLLSGGETV-YFGE 230 (661)
Q Consensus 215 D~v~lL~~G~~v-~~G~ 230 (661)
++|+-++.|++. |.|.
T Consensus 218 t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 218 THILELDRGKLTPYKGN 234 (530)
T ss_pred hheEEecCCceeEecCC
Confidence 999999999865 4443
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=1.3e-31 Score=333.86 Aligned_cols=193 Identities=23% Similarity=0.393 Sum_probs=155.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~---~~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP---SEGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 4689999999999999999999999999999999999987 489999987 38999999998875 99999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHH--HHHHHcC-CCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIE--EAITEMG-LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGL 177 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~--~~l~~lg-L~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGL 177 (661)
+.|+... ..+..++.++ .+.+.+. +.+..+|.+|+. ...||||||||++||||++.+|++++|||||+||
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saL 579 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 9987421 1111111111 1112221 122234566653 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 178 DSAAAFFVVKI-LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 178 D~~~~~~i~~~-L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
|+.++..+.+. ++++. +|+|+|++||++. .+ ..||++++|++|+++..|+.++..
T Consensus 580 D~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 580 DVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred CHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999974 66665 4899999999974 34 569999999999999999876653
No 363
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.2e-30 Score=264.69 Aligned_cols=196 Identities=23% Similarity=0.275 Sum_probs=136.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCC--------CC-CceeeEEEECCeecccccCeEEEEecCC
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLL-DALAGRLS--------GN-VVMTGNVLLNGKKRRLDYGGVAYVTQEN 89 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL-~~LaG~~~--------~~-~~~~G~i~~~g~~~~~~~~~i~yv~Q~~ 89 (661)
+..+|+|||+++++||+++|+||||||||||+ ..+...-+ +. ....|.+... +.........++..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKP-DVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcc-ccccccCCCceEEecCC
Confidence 46799999999999999999999999999995 44432000 00 0000100000 00001112234444443
Q ss_pred C--CCCCCCHH---HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhh
Q 045930 90 I--MLGTLTVR---ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILT 163 (661)
Q Consensus 90 ~--l~~~lTV~---E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~ 163 (661)
. +.+..+|. |...+...+. ..++..++ .+.++.+||.+ ..++.+. .||||||||++||++|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAP-----TLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccC-----cCCHHHHHHHHHHHHHHh
Confidence 2 23444554 3222221111 12222333 56899999976 4677664 599999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEec
Q 045930 164 RP--QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFG 229 (661)
Q Consensus 164 ~P--~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G 229 (661)
+| ++++|||||+|||+.++..+.+.|++++++|.|||+++|++. ++ ..||++++| ++|+++++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 98 599999999999999999999999999888999999999973 44 689999999 999999876
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=9.6e-31 Score=326.39 Aligned_cols=189 Identities=29% Similarity=0.431 Sum_probs=149.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++ +.++|++|++.+++ .||+||
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~en 740 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRGN 740 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHHH
Confidence 56999999999999999999999999999999999999873 8999863 46999999998775 699999
Q ss_pred HHHHHhcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 045930 101 IAYSAHLRLPSNMNNEEITD-----VIEEAITEM--GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP 173 (661)
+.|... ...+..++ .+++.++.+ |+. +.+|. ....||||||||++|||||+.+|++++||||
T Consensus 741 I~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~~----t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP 809 (1560)
T PTZ00243 741 ILFFDE------EDAARLADAVRVSQLEADLAQLGGGLE----TEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDP 809 (1560)
T ss_pred HHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccch----HHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 998521 11111111 123334444 443 33332 2357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 174 TSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|++||+.++..+++.+.....+|+|+|++||++. ..+.+|+|++|++|++++.|+.++.
T Consensus 810 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 810 LSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999988754322235899999999973 4467999999999999999987653
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=5.4e-31 Score=306.23 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=147.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-----c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-----R 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-----~ 76 (661)
.|+++|+++.+.. +.+|+|+|+++++||.+||+|||||||||||++|+|+...+...+|+|.+.++.. .
T Consensus 177 ~I~i~nls~~y~~------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 177 DIHMENFSISVGG------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred eEEEceEEEEeCC------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 4788999998842 4599999999999999999999999999999999997411112245554322210 0
Q ss_pred c--------------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHH-------------------HHHHHHH
Q 045930 77 L--------------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNE-------------------EITDVIE 123 (661)
Q Consensus 77 ~--------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~-------------------~~~~~v~ 123 (661)
. ..+.++|++|++.+... ++.++.... . ....+.+ +.++++.
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~-~---~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGA-N---KDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc-c---ccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 0 00112333332211110 111110000 0 0011111 2344566
Q ss_pred HHHHHcCCC-ccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Q 045930 124 EAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202 (661)
Q Consensus 124 ~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s 202 (661)
++++.+|+. +..++.++ .|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||++
T Consensus 326 ~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviiv 397 (718)
T PLN03073 326 SILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVV 397 (718)
T ss_pred HHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 777788885 45666664 59999999999999999999999999999999999999999999887 6899999
Q ss_pred ecCCchHHHhhcCeEEEEeCCeEE-EecCC
Q 045930 203 IHQPSSEVFALFDDLFLLSGGETV-YFGEA 231 (661)
Q Consensus 203 ~Hq~~~~i~~~~D~v~lL~~G~~v-~~G~~ 231 (661)
+|+. ..+..+||++++|++|+++ |.|+.
T Consensus 398 sHd~-~~l~~~~d~i~~l~~g~i~~~~g~~ 426 (718)
T PLN03073 398 SHAR-EFLNTVVTDILHLHGQKLVTYKGDY 426 (718)
T ss_pred ECCH-HHHHHhCCEEEEEECCEEEEeCCCH
Confidence 9995 6788999999999999996 56653
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=4.6e-30 Score=239.38 Aligned_cols=132 Identities=46% Similarity=0.706 Sum_probs=118.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCCCCCCCCCHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
|+|||+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999877 49999999987643 256799999999999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts 175 (661)
|+ ...++++++++.+++.+..++.++.. ...||||||||++||+||+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 23456889999999999888888643 36899999999999999999999999999996
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.4e-29 Score=257.99 Aligned_cols=195 Identities=23% Similarity=0.304 Sum_probs=151.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCC-----CC--Ccee------eEEEECCeecccc-c--
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-----GRLS-----GN--VVMT------GNVLLNGKKRRLD-Y-- 79 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-----G~~~-----~~--~~~~------G~i~~~g~~~~~~-~-- 79 (661)
..-|+|||..++.|++++|.|+||||||||++.+. .... +. .... --|.++..+.... +
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998552 1110 00 0011 1355665442100 0
Q ss_pred ----------------------------CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC
Q 045930 80 ----------------------------GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL 131 (661)
Q Consensus 80 ----------------------------~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 131 (661)
..+.|..++...+..+||.|++.|...++ ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 01456666666678899999999876542 12456789999999
Q ss_pred Cc-cccccccCccccccCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 132 ED-CADRLIGNWHWRGISGGEKKRLSIALEILTR---PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 132 ~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~---P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
.+ ..++.+ +.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++.
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 87 466665 46999999999999999996 7999999999999999999999999999988999999999973
Q ss_pred hHHHhhcCeEEEE------eCCeEEEecCC
Q 045930 208 SEVFALFDDLFLL------SGGETVYFGEA 231 (661)
Q Consensus 208 ~~i~~~~D~v~lL------~~G~~v~~G~~ 231 (661)
.+ +.+|+++.| ++|++++.|++
T Consensus 234 -~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 -VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 44 679999999 89999999874
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=236.85 Aligned_cols=210 Identities=24% Similarity=0.323 Sum_probs=171.0
Q ss_pred eEEEEEEEEEeecC-CcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee--c---
Q 045930 2 YLVWEEVTVVVPNF-GSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK--R--- 75 (661)
Q Consensus 2 ~l~~~~l~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~--~--- 75 (661)
-|..+|++.++.-- ..|-.-++++|+||+++.||++++=|||||||||||++|-|.+.++ +|+|++.-.. .
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhh
Confidence 35677776654321 1233457999999999999999999999999999999999998874 8999885321 1
Q ss_pred --------ccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccccc
Q 045930 76 --------RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147 (661)
Q Consensus 76 --------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 147 (661)
..+++.+|||.|--...|.....|-++-.+--+ +.+.+..+.++.+++..+++.+..-.+. +...
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~La----PaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLA----PATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCC----Cccc
Confidence 123567999999888888877777776655432 5778888899999999999976554443 2469
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
||||+|||.|||.++.+-+||+|||||+.||..++.-++++|++-+..|..+|=+-|| .+.-...+||++-+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999998889999999999 3445568999998763
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=5.5e-29 Score=297.71 Aligned_cols=206 Identities=26% Similarity=0.402 Sum_probs=170.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|.++.-.. ......|+|||+++++|+++||+||-|||||+||.+|.|.++. .+|++.++|.
T Consensus 518 ~i~i~~~sfsW~~---~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDS---ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS-------- 583 (1381)
T ss_pred eEEEeeeeEecCC---CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe--------
Confidence 4567777776543 1234489999999999999999999999999999999999886 5999999885
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSgGerqR 154 (661)
++||+|++-+++. ||||||.|+..+ . +++.+++++...|++- -.|-+|+.+ -.||||||||
T Consensus 584 iaYv~Q~pWI~ng-TvreNILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQKqR 651 (1381)
T KOG0054|consen 584 VAYVPQQPWIQNG-TVRENILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQKQR 651 (1381)
T ss_pred EEEeccccHhhCC-cHHHhhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhHHHH
Confidence 8999999988876 999999997432 2 3456677776666543 345566532 3699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+++|||+-+|.+|++||.|.|.+|+.....+.+..-+-.-+++|+|.+|||. +..+.+|.|++|++|+++..|+.+|.
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHH
Confidence 9999999999999999999999999999998865444334589999999984 68889999999999999999998876
Q ss_pred h
Q 045930 235 P 235 (661)
Q Consensus 235 ~ 235 (661)
.
T Consensus 730 ~ 730 (1381)
T KOG0054|consen 730 L 730 (1381)
T ss_pred H
Confidence 5
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=7.7e-29 Score=296.45 Aligned_cols=213 Identities=22% Similarity=0.356 Sum_probs=176.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|.. ....+|+|||++|+|||.+||+|..|||||||+++|-++..+ .+|+|.+||.+...
T Consensus 1138 ~I~f~~~~~RYrp----~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~---~~G~I~IDgvdI~~igL~ 1210 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRP----NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP---AEGEILIDGVDISKIGLH 1210 (1381)
T ss_pred eEEEEEeEEEeCC----CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc---cCCeEEEcCeecccccHH
Confidence 5799999999864 235799999999999999999999999999999999999887 48999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.|++++.+||||.+|.. |||.||.=.. ..++++ +-++|+..+|.+ ..|+.+.+ ....+|-
T Consensus 1211 dLRsrlsIIPQdPvLFsG-TvR~NLDPf~------e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~Sv 1278 (1381)
T KOG0054|consen 1211 DLRSRLSIIPQDPVLFSG-TVRFNLDPFD------EYSDDE----IWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSV 1278 (1381)
T ss_pred HHHhcCeeeCCCCceecC-ccccccCccc------ccCHHH----HHHHHHHhChHHHHhhCCcCCCceecC-CCccCCh
Confidence 26789999999999988 9999997221 233443 445555554433 35555543 2357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||.+++||||+++++||+|||.|++.|+.+-..|.++||+-=+ ++|||.+-|.... +.+ +|||+||++|+++++|
T Consensus 1279 GQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-Vmd-~DrVlVld~G~v~Efd 1355 (1381)
T KOG0054|consen 1279 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-VMD-SDRVLVLDAGRVVEFD 1355 (1381)
T ss_pred HHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-hhh-cCeEEEeeCCeEeecC
Confidence 999999999999999999999999999999999999999998543 6999999999753 443 8999999999999999
Q ss_pred CCCChhH
Q 045930 230 EAKSAPT 236 (661)
Q Consensus 230 ~~~~~~~ 236 (661)
+|.+..+
T Consensus 1356 sP~~Ll~ 1362 (1381)
T KOG0054|consen 1356 SPAELLS 1362 (1381)
T ss_pred ChHHHHh
Confidence 9876543
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=1.2e-28 Score=244.83 Aligned_cols=164 Identities=24% Similarity=0.338 Sum_probs=130.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC------CceeeEEEECCeecc--cccCeEEEEecCCCCCCCCC
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN------VVMTGNVLLNGKKRR--LDYGGVAYVTQENIMLGTLT 96 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~------~~~~G~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lT 96 (661)
+++++++++| +++|+||||||||||+++|+|...+. ....|++.++|+... ...+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6799999999 99999999999999999999987432 112356777776532 1246799999998665
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL----TRPQLLFLDE 172 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~----~~P~lllLDE 172 (661)
|. . . .+++++++++. .+..++.+ +.||||||||++||++++ .+|++++|||
T Consensus 89 ------~~--~-----~----~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--I-----I----SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--E-----E----ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 0 0 02356677766 44556655 469999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 173 PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
||+|||+.++..+.+.|+++++ +.|||++||++. . .+.+|+++.+.
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~ 189 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVT 189 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEE
Confidence 9999999999999999999976 689999999973 3 47899999996
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=5.3e-28 Score=270.39 Aligned_cols=196 Identities=29% Similarity=0.390 Sum_probs=162.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.+.. .+.+++++|+.+.+|+.+||+||||+|||||||+|+|...+. +|+|.+.-. -.
T Consensus 321 vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------v~ 386 (530)
T COG0488 321 VLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------VK 386 (530)
T ss_pred eEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------eE
Confidence 3678888887642 368999999999999999999999999999999999988773 898887532 34
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHH
Q 045930 82 VAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 82 i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+||..|+. .+.+..|+.|++.-.. | .. .+..+...|..+++.. ...++++ .||||||.||.+|+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~----~-~~----~e~~~r~~L~~f~F~~~~~~~~v~-----~LSGGEk~Rl~La~ 452 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGF----P-DG----DEQEVRAYLGRFGFTGEDQEKPVG-----VLSGGEKARLLLAK 452 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhC----c-cc----cHHHHHHHHHHcCCChHHHhCchh-----hcCHhHHHHHHHHH
Confidence 89999986 4458889999987432 1 11 1567889999999953 4566665 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe-cC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF-GE 230 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~-G~ 230 (661)
.++.+|.+|+|||||+.||..+...+.+.|.+. .-|||++||| ...+...+++++.+.+ ++..+ |.
T Consensus 453 ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 453 LLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred HhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCC
Confidence 999999999999999999999999999998876 3599999999 4789999999999998 54433 54
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=1.7e-29 Score=236.99 Aligned_cols=194 Identities=28% Similarity=0.427 Sum_probs=168.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCCCCCCCCCHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
|-.+|+++..||++-++|||||||||||-.++|+++. +|+|.++|++... ..+.-+|..|+..-...|.|.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 5679999999999999999999999999999999886 8999999998532 124568998887666678899
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhh-----C--CCEEEEe
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT-----R--PQLLFLD 171 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~-----~--P~lllLD 171 (661)
..+... . +.++....++++-+.++|++...+.+ ..|||||-|||-+|...+. | .++|+||
T Consensus 91 ~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 91 HYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred hhhhhc----C----chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 888753 2 23566677889999999999888876 4699999999999987765 3 4799999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 172 EPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 172 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||.++||.+....+-+.|.++++.|.+||++.||.+ ...+.+|++++|+.|++...|.++++.
T Consensus 158 EP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 158 EPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 999999999999999999999999999999999975 688899999999999999999998865
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=5e-27 Score=256.82 Aligned_cols=201 Identities=24% Similarity=0.459 Sum_probs=171.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc------cCeEEEEecC---CCCCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD------YGGVAYVTQE---NIMLG 93 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~------~~~i~yv~Q~---~~l~~ 93 (661)
.++|+||++++||+++|-|-=|||+|-|+++|.|..+. .+|+|.+||++.... +..++|||.| +-++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 57899999999999999999999999999999997655 489999999975422 3579999997 46889
Q ss_pred CCCHHHHHHHHHhcCCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhCCCEEEE
Q 045930 94 TLTVRETIAYSAHLRLP-S-NMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFL 170 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllL 170 (661)
.++|.||+.++..-+.. . -.+....++.+++..+.+++.- -.+..++ .||||.+|||.||+.|..+|++|||
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~-----~LSGGNQQKVvlarwL~~~p~vLil 425 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG-----TLSGGNQQKVVLARWLATDPKVLIL 425 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh-----cCCchhhhhHHHHHHHhcCCCEEEE
Confidence 99999999988322211 1 2455556678899999999853 4556665 5999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||||.|.|.-+..+|.++++++|++|++||++|.+. +|+..+||||++|++|+++..=+.+
T Consensus 426 DEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 426 DEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred CCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999995 6999999999999999998754444
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=3.7e-27 Score=241.50 Aligned_cols=186 Identities=17% Similarity=0.285 Sum_probs=130.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC----------------CCCC---ceee--EEEECCeec---
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----------------SGNV---VMTG--NVLLNGKKR--- 75 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~----------------~~~~---~~~G--~i~~~g~~~--- 75 (661)
++.++++++ |++++|+||||||||||+++|++.+ .++. ...+ +|.+++...
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 456888887 7899999999999999999998432 1110 0112 444544211
Q ss_pred ---c--cccCeEEEEecCCCCCC-CCCHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 76 ---R--LDYGGVAYVTQENIMLG-TLTVRETIAYSAHLRLPSNMNN-EEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 76 ---~--~~~~~i~yv~Q~~~l~~-~lTV~E~l~~~~~l~~~~~~~~-~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
. ..++.++|++|+..+++ ..|..|...+...+.+...... ...+.++ .+.+++.+..+..+ +.||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~~~-----~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQEM-----QQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccccc-----cccC
Confidence 0 11356899988877776 4677776666554433211000 0001122 23344554455554 4699
Q ss_pred HHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 149 GGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 149 gGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +++||+++|++ ++.++||++++|.
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 999999999999974 5899999999999999999999999999966 78888888884 6889999999996
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=7e-28 Score=242.03 Aligned_cols=177 Identities=19% Similarity=0.193 Sum_probs=135.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-cccCeEEEEecCCCCCCCCCHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-LDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
.+.+++++++ ++++|+||||||||||+++|.-. +|.+.. ...+++++++|+..+++.+|+.
T Consensus 16 ~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i~~~~~~~~~~~~~~~~ 77 (212)
T cd03274 16 GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKLSDLIHNSAGHPNLDSC 77 (212)
T ss_pred CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhHHHHhcCCCCCCCCceE
Confidence 4678999987 89999999999999999999722 122111 1224688999998888999999
Q ss_pred HHHHHHHhcCCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhh----CCCE
Q 045930 99 ETIAYSAHLRLP-----SNMNNEEITD--VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT----RPQL 167 (661)
Q Consensus 99 E~l~~~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~----~P~l 167 (661)
|.+.+....... .+...++... ..+++++.++|.+..++.++ .+|+|||||++||++++. +|++
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 987766543200 0111111111 12566677888887887764 599999999999999974 5799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
+++||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.+.||++++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999864 57888888995 68899999999963
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1e-26 Score=239.69 Aligned_cols=177 Identities=19% Similarity=0.247 Sum_probs=135.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe-ec-------ccccCeEEEEecCC---------CCCCCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK-KR-------RLDYGGVAYVTQEN---------IMLGTLT 96 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~-~~-------~~~~~~i~yv~Q~~---------~l~~~lT 96 (661)
..+++|+||||||||||+++|++.+.+. ..|++...|. +. ......+++++|++ .+.+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4499999999999999999999997642 2355655554 11 11234799999985 3457889
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC--------------------ccccccccCccccccCHHHHHHHH
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE--------------------DCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
|.+++......+...+ .++...+++.++++.+||. +..++.+ +.||||||||++
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~-----~~lS~G~~qr~~ 176 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL-----TELSGGQRSLVA 176 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc-----cccCHHHHHHHH
Confidence 9998865432211000 1223457788999999986 2233443 569999999999
Q ss_pred HHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 157 IALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 157 Ia~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
||++|+ .+|+++++||||+|||+.++..+.+.|+++++ |.|||++||++ ++.+.+|+++-+.
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 999998 57899999999999999999999999999964 89999999994 6888899999875
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=2.7e-26 Score=230.82 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=126.8
Q ss_pred eceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe----ecccccCeEEEEecCCCCCCCCCHHH
Q 045930 25 NGLTGYAE-PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK----KRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 25 ~~vs~~i~-~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~----~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
++++|... +|++++|+|||||||||||++|++.+.+. ..+....+.. ........+++++|++.... ++.+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r 93 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVER 93 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEE
Confidence 56666544 58999999999999999999999654221 1222222210 01122456899999863211 1211
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhh----------CCCEEE
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT----------RPQLLF 169 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~----------~P~lll 169 (661)
. + +.+.++..+.+ .++..++.+..++.++ .||||||||++||++|+. +|++++
T Consensus 94 ~---------~-gl~~~~~~~~~--~l~~g~l~~~l~~~~~-----~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ll 156 (213)
T cd03279 94 S---------R-GLDYDQFTRIV--LLPQGEFDRFLARPVS-----TLSGGETFLASLSLALALSEVLQNRGGARLEALF 156 (213)
T ss_pred e---------c-CCCHHHHHHhh--hhhhcchHHHhcCCcc-----ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEE
Confidence 1 1 23333322222 2344456666666654 599999999999999985 578999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 170 LDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 170 LDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|||||+|||+.+...+.+.|++++++|+|||++||++ +.+...+|+++++++|.
T Consensus 157 lDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 157 IDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 9999999999999999999999987799999999997 57888999999999875
No 379
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=249.26 Aligned_cols=195 Identities=29% Similarity=0.440 Sum_probs=160.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++..+. .+..|++.|+.+++||-+.|.||||||||||+++|+|+.+-+ +|+|..- ....
T Consensus 392 ~i~~~nl~l~~p~-----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~~~~ 457 (604)
T COG4178 392 GITLENLSLRTPD-----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------ADSA 457 (604)
T ss_pred eeEEeeeeEECCC-----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------CCCc
Confidence 5789999998764 357999999999999999999999999999999999999864 6777653 1245
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-ccccccCHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN-WHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~-~~~~~LSgGerqRvsIa~a 160 (661)
+-|+||.|.+... |.||.+.|..... ..+ .+.+.++|.++||.+..++.-+. ..-+.||+||||||++||.
T Consensus 458 ~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARi 529 (604)
T COG4178 458 LLFLPQRPYLPQG-TLREALCYPNAAP---DFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARL 529 (604)
T ss_pred eEEecCCCCCCCc-cHHHHHhCCCCCC---CCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHH
Confidence 8999999998777 9999998753221 122 34588899999999888876442 1236799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
|+++|++++|||.|++||..+...+.+.|++-- .+.|||-+.|.| .+..+.++.+-+.
T Consensus 530 lL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 530 LLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccch--hhHHHHhhheeec
Confidence 999999999999999999999999999998743 269999999997 4677777766664
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=5.8e-25 Score=269.65 Aligned_cols=137 Identities=26% Similarity=0.396 Sum_probs=113.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHh---hCCC
Q 045930 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEIL---TRPQ 166 (661)
Q Consensus 91 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~---~~P~ 166 (661)
.+...||.|+|.+...-........++..+++ ++++.+||.+. .++.+. .||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999887542111112234556667 58899999876 677764 59999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe------CCeEEEecCCCChh
Q 045930 167 LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS------GGETVYFGEAKSAP 235 (661)
Q Consensus 167 lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~------~G~~v~~G~~~~~~ 235 (661)
+++|||||+|||+.+...+++.|++++++|.|||+++|++ +.+ +.+|++++|. +|+++..|++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999998899999999997 455 8999999996 78999999987643
No 381
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=233.36 Aligned_cols=219 Identities=26% Similarity=0.406 Sum_probs=185.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-c----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-R---- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~---- 76 (661)
.|+.+||++.-.. ....++||||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. .
T Consensus 257 vL~V~~L~v~~~~-----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~ 328 (501)
T COG3845 257 VLEVEDLSVKDRR-----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSP 328 (501)
T ss_pred EEEEeeeEeecCC-----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCH
Confidence 4778888875431 246799999999999999999999999999999999998763 69999999874 1
Q ss_pred --cccCeEEEEecCC---CCCCCCCHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccc
Q 045930 77 --LDYGGVAYVTQEN---IMLGTLTVRETIAYSAHLRLP----SNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRG 146 (661)
Q Consensus 77 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~ 146 (661)
.....++|||.|. .+.+.+|+.||+.+...-+-| .-....+.++...+++++++.... .+..+ +.
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a-----~~ 403 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPA-----RS 403 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcch-----hh
Confidence 1235799999986 478899999999887543211 124567788889999999998632 33333 56
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
||||.+||+-+||+|..+|++|++.+||.|||..++..+.+.|.++++.|+.|++++.+. +|++.++|||.+|.+|+++
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGRIV 482 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCcee
Confidence 999999999999999999999999999999999999999999999999999999999995 7999999999999999999
Q ss_pred EecCCCCh
Q 045930 227 YFGEAKSA 234 (661)
Q Consensus 227 ~~G~~~~~ 234 (661)
...+++++
T Consensus 483 ~~~~~~~~ 490 (501)
T COG3845 483 GIVPPEEA 490 (501)
T ss_pred cccccccC
Confidence 88877653
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=2.6e-25 Score=222.22 Aligned_cols=165 Identities=21% Similarity=0.264 Sum_probs=123.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCceeeEEEECCeec--ccccCeEEEEecCC-----CCCCC
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALA----GRLSGNVVMTGNVLLNGKKR--RLDYGGVAYVTQEN-----IMLGT 94 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La----G~~~~~~~~~G~i~~~g~~~--~~~~~~i~yv~Q~~-----~l~~~ 94 (661)
..++++.+| +++|+|||||||||||++|. |...++ .|.+..+.... ......+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 776542 34443111111 12245699999987 34455
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH------HHHHHHHhhCCCEE
Q 045930 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR------LSIALEILTRPQLL 168 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR------vsIa~aL~~~P~ll 168 (661)
+||.|++.+. ... .+++.+ +..+ +.||+||+|| ++||++++.+|+++
T Consensus 91 ~~~~~~~~~~---------~~~----~~~~~~---------~~~~-----~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 91 LAILENVIFC---------HQG----ESNWPL---------LDMR-----GRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hhHhhceeee---------chH----HHHHHH---------hcCc-----cccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 6888888642 112 223333 3333 4699999996 78999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe-CC
Q 045930 169 FLDEPTSGLDSAAAF-FVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS-GG 223 (661)
Q Consensus 169 lLDEPtsGLD~~~~~-~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~-~G 223 (661)
++||||++||+.++. .+.+.|++++++ |.|||+++|++ +....+|+++.|. +|
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~--~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE--ELVDAADHIYRVEKDG 199 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH--HHHhhCCEEEEEeeCC
Confidence 999999999999999 999999999876 89999999996 3457899999996 44
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=5.3e-25 Score=212.08 Aligned_cols=229 Identities=19% Similarity=0.201 Sum_probs=176.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee-eEEEECCeec-----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT-GNVLLNGKKR-----R 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~-G~i~~~g~~~-----~ 76 (661)
|.++||+.++.+. . ...+++++||+++..||+-+++|.||||||-..|+|+|..+.+..++ ....+++.+. +
T Consensus 4 LDIrnL~IE~~Ts-q-G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 4 LDIRNLTIEFKTS-Q-GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred ccccceEEEEecC-C-CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 5678999998762 2 23579999999999999999999999999999999999877543222 2233444321 1
Q ss_pred c----ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHcCCCccccccccCcccccc
Q 045930 77 L----DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMN---NEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147 (661)
Q Consensus 77 ~----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~---~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 147 (661)
. ..+.|++++|++. +-|.-+|...+.-..-...-.+.- -.-++.+.-++|..+|+.+..|-.-. ++.+|
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~S--YP~El 159 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRS--YPYEL 159 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHh--Ccchh
Confidence 1 1356899999974 566666655544332111101100 11245677889999999887776543 45689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
.-||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|.||+.++||. ..+.+.||++-+|.-|+.+
T Consensus 160 TeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~ 238 (330)
T COG4170 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTV 238 (330)
T ss_pred ccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEecccc
Confidence 99999999999999999999999999999999999999999999987 489999999996 5799999999999999999
Q ss_pred EecCCCChhH
Q 045930 227 YFGEAKSAPT 236 (661)
Q Consensus 227 ~~G~~~~~~~ 236 (661)
+.++.++.++
T Consensus 239 ESa~~e~l~~ 248 (330)
T COG4170 239 ESAPSEELVT 248 (330)
T ss_pred cccchhHHhc
Confidence 9998876553
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=4.5e-24 Score=252.35 Aligned_cols=124 Identities=26% Similarity=0.402 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhCC---CEEEE
Q 045930 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRP---QLLFL 170 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P---~lllL 170 (661)
+||.|++.|...++ . ..+..+.++.+||.+ ..++.++ .||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~--------~-i~~~l~~L~~vgL~~l~l~~~~~-----tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP--------K-IARKLQTLVDVGLGYIKLGQPAT-----TLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch--------h-hhHHHHHHHHCCCCcccccCCcc-----cCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 79999999876542 1 123467899999986 4677664 59999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ ..+|+++.| ++|++++.|++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el 925 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEV 925 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHH
Confidence 999999999999999999999988899999999997 344 679999999 79999999986543
No 385
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.5e-24 Score=225.84 Aligned_cols=203 Identities=23% Similarity=0.287 Sum_probs=159.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|++|.+.. ..-=+..||+++++||++-|+|.||||||||++.|.|+.+|+ +|+|.+||++.+.
T Consensus 322 ~lelrnvrfay~~-----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~le 393 (546)
T COG4615 322 TLELRNVRFAYQD-----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLE 393 (546)
T ss_pred ceeeeeeeeccCc-----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHH
Confidence 5788888887753 223477899999999999999999999999999999999984 9999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++-.+-|+-|-.+|+.+- .+.+. ...+.++..++.+.|.+...-+=|+-..-.||.|||||++
T Consensus 394 dYR~LfSavFsDyhLF~~ll------------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlA 458 (546)
T COG4615 394 DYRKLFSAVFSDYHLFDQLL------------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLA 458 (546)
T ss_pred HHHHHHHHHhhhHhhhHhhh------------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHH
Confidence 1333455555555554421 11111 1235688888888887644333333334579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK-NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~-~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+-.|++-+-+|+++||=.+.-||.-+..+.+.+- .+.+.|+||+.+||| +.-|..+||++.+.+|++++.-
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHD--d~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD--DHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecC--chhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999887654 456679999999999 3689999999999999998654
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=3.4e-23 Score=244.45 Aligned_cols=124 Identities=24% Similarity=0.374 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhh---CCCEEE
Q 045930 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILT---RPQLLF 169 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~---~P~lll 169 (661)
.+||.|.+.|...+. . ..+..++++.+||.. ..++.+ +.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888888765432 1 123457889999976 356665 4699999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCC
Q 045930 170 LDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKS 233 (661)
Q Consensus 170 LDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~ 233 (661)
|||||+|||+.++..+.+.|+++.++|.|||+++|++. .+ ..+|+++.| ++|++++.|++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHH
Confidence 99999999999999999999999888999999999973 44 679999999 7999999998764
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.1e-23 Score=207.54 Aligned_cols=168 Identities=21% Similarity=0.246 Sum_probs=123.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--eeeE----EEECCeecccccCeEEEEecCCCCCCCCCH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV--MTGN----VLLNGKKRRLDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~--~~G~----i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV 97 (661)
++++++.+.+| +.+|+|||||||||||++|.....+... ..|. +.-+| .....+.+.+|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~----~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDG----ESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCC----CCeEEEEEEEEcCCccCC---
Confidence 46788888888 8899999999999999999854332210 0121 00011 113457788887655441
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH----hhCCCEEEEeCC
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI----LTRPQLLFLDEP 173 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL----~~~P~lllLDEP 173 (661)
+ . ....+++++++++. .+..++.++ .||+|||||++||+++ +.+|++++||||
T Consensus 84 ------------~--~-~~~~~~~~~~~l~~---~~~~~~~~~-----~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 ------------P--L-CVLSQDMARSFLTS---NKAAVRDVK-----TLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred ------------c--C-CHHHHHHHHHHhcc---ccccCCccc-----ccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 0 1 11123567777776 566677664 5999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc---CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 174 TSGLDSAAAFFVVKILKNIAHD---GRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~---g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|+|||..++..+.+.|++++++ +.|||+++|++ .++.++ |+|-+|..++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 9999999999999999998653 36899999997 456664 9999998764
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=2.1e-23 Score=225.08 Aligned_cols=209 Identities=24% Similarity=0.355 Sum_probs=141.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-ccCe
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DYGG 81 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~~~ 81 (661)
+.+++++.++. .+.+++|+++++.+||-++|+|+|||||||+|++|+|+..|. ..+=.+..-.+.... ..+.
T Consensus 76 vk~~sls~s~~------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 76 VKIESLSLSFH------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred ceeeeeeeccC------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-CcccchhhhcccCCCchHHH
Confidence 56777777764 367999999999999999999999999999999999998652 111111111111000 0000
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHh-cC----------------CCCCCCHHHHHHHHHHHHHHcCC-CccccccccCcc
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAH-LR----------------LPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWH 143 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~-l~----------------~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~ 143 (661)
+-++.+ +.-..+.-+.+-+. +. ....+..+..+.++-++|..+|. ++..++.+
T Consensus 149 v~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~---- 219 (614)
T KOG0927|consen 149 VQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV---- 219 (614)
T ss_pred HHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh----
Confidence 111110 00001111111000 00 00112333445567777777775 56777776
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+..+ .++++++|. .+.+-..|.+|+-|.++
T Consensus 220 -~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~-QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 220 -KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS-QDFLNGVCTNIIHLDNK 295 (614)
T ss_pred -hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc-hhhhhhHhhhhheeccc
Confidence 46999999999999999999999999999999999999888888876532 288999998 46888999999999999
Q ss_pred eE-EEecCC
Q 045930 224 ET-VYFGEA 231 (661)
Q Consensus 224 ~~-v~~G~~ 231 (661)
+. .|.|+-
T Consensus 296 kl~~y~Gny 304 (614)
T KOG0927|consen 296 KLIYYEGNY 304 (614)
T ss_pred ceeeecCCH
Confidence 94 555653
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=9.6e-23 Score=215.78 Aligned_cols=173 Identities=25% Similarity=0.353 Sum_probs=141.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAY 103 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 103 (661)
|+-=.+++..||+++++||||-||||+.++|||.++|+ +|+ .. .-.++|-||--.--...||++.+.-
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~-----~~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE-----DLKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc-----cceEeecceeecCCCCCcHHHHHHH
Confidence 44455678889999999999999999999999999984 665 11 1347888886443456799998875
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 045930 104 SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183 (661)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~ 183 (661)
...-+... .....++++-|.|++..|+.+. +|||||.|||+||.+|..++++++||||++-||+..+.
T Consensus 425 ~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 425 AIRSAFGS-------SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred hhhhhccc-------chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 54322111 1234678888999999999885 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 184 FVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 184 ~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
.+.+.+++.+++ ++|.+++-||. ..+--+.||+++..
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 999999999875 79999999996 46667799998775
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=4.1e-23 Score=222.86 Aligned_cols=197 Identities=20% Similarity=0.297 Sum_probs=152.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
+.++|+++.+.. +..++++++|-+..++-+|++||||+|||||||++.|.+.|. .|.|.-.-. ..+
T Consensus 390 i~~~nv~F~y~~-----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H------~~~ 455 (614)
T KOG0927|consen 390 IMVQNVSFGYSD-----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSH------NKL 455 (614)
T ss_pred EEEeccccCCCC-----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---ccccccccc------ccc
Confidence 456666665542 236899999999999999999999999999999999999884 787653321 224
Q ss_pred EEEecC--CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHH
Q 045930 83 AYVTQE--NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 83 ~yv~Q~--~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
++-.|. +.+.-..++-|++.-.. +++...+.+..++.++||. +..+..+ +.||+|||+||..|+
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~Gqr~rVlFa~ 522 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQLSDGQRRRVLFAR 522 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhcccccchhHHHHH
Confidence 444554 33444567777765321 1123345688999999998 4555555 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE-EEecC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET-VYFGE 230 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~-v~~G~ 230 (661)
.++..|.+|+|||||+|||..+...+.+.|.+. .-+||.++||- -.|.+.++++.+..+|.+ .+.|+
T Consensus 523 l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 523 LAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred HHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCcc
Confidence 999999999999999999999999888888775 35899999996 478899999999987765 45554
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=5.2e-23 Score=211.65 Aligned_cols=181 Identities=20% Similarity=0.237 Sum_probs=118.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC--------eecc--cccC--eEEEEecCCCC-CCCCCHH
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG--------KKRR--LDYG--GVAYVTQENIM-LGTLTVR 98 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g--------~~~~--~~~~--~i~yv~Q~~~l-~~~lTV~ 98 (661)
.++ +++|+|||||||||||++|++.+.+. .|++..++ .... .... .+.|..|++.. .-.-+++
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 344 99999999999999999999987542 34433222 1100 0011 23444443221 1111111
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccc---------ccC--------ccccccCHHHHHHHHHHHHH
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL---------IGN--------WHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~---------vg~--------~~~~~LSgGerqRvsIa~aL 161 (661)
+... ..+.. + +....+.++++++.+|++...... +.+ ..+..||||||||++||+++
T Consensus 97 ~~~~---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al 170 (247)
T cd03275 97 GGSS---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLF 170 (247)
T ss_pred CCce---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHH
Confidence 1110 00110 1 111234467888889985322111 111 12267999999999999999
Q ss_pred hhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-CCe
Q 045930 162 LTR----PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS-GGE 224 (661)
Q Consensus 162 ~~~----P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~-~G~ 224 (661)
+.+ |+++++||||+|||+.++..+.+.|++++++|.+||+++|++ ++.+.+|++++|. ++.
T Consensus 171 ~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 171 AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQE 236 (247)
T ss_pred HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecCC
Confidence 975 899999999999999999999999999987799999999995 5678999999996 443
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.87 E-value=1.2e-21 Score=212.82 Aligned_cols=203 Identities=23% Similarity=0.304 Sum_probs=160.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.+++++++...|+. +..+++|+|++|+.|+-+.|+||||||||+||++|+|+.+. .+|++..-.+.- .+.
T Consensus 433 ~i~~e~v~l~tPt~----g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~~---~~~ 502 (659)
T KOG0060|consen 433 AIEFEEVSLSTPTN----GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDGG---PKD 502 (659)
T ss_pred eEEeeeeeecCCCC----CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccCC---CCc
Confidence 47889999887752 35688999999999999999999999999999999999875 478877543321 256
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc------cccccCHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW------HWRGISGGEKKRL 155 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~------~~~~LSgGerqRv 155 (661)
+-|+||.|.+.-. |.||.+.|...---+ ..+....+++.+.|+.++|.|..++.-|-. ....||+||+||+
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 8999999987655 999999987432111 111122456788888888888776653311 2257999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
+.||-+.++|++-||||.||++|......+.+.++++ |.|.|-+.|.++ +.+.=|.++-|++
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 9999999999999999999999999988888777664 899999999964 6676688888874
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.2e-21 Score=210.53 Aligned_cols=191 Identities=21% Similarity=0.297 Sum_probs=134.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|..++++..+. .+.+|++-++++..|.-++|+|+||+||||||++|+. |+|..-..+... +-
T Consensus 81 i~~~~fdLa~G------~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~---~g 142 (582)
T KOG0062|consen 81 IHIDNFDLAYG------GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV---RG 142 (582)
T ss_pred eeeeeeeeeec------chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe---ec
Confidence 45556666554 4789999999999999999999999999999999996 222111111000 01
Q ss_pred EEEecC-CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHH
Q 045930 83 AYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 83 ~yv~Q~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
-+++-. +.+....++.+.+.--..+. ... +.++..+++|..+|.++- ....+ +.+|||-|-|+++|||
T Consensus 143 ~~t~~~~~~l~~D~~~~dfl~~e~~l~--~~~---~l~ei~~~~L~glGFt~emq~~pt-----~slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 143 DDTEALQSVLESDTERLDFLAEEKELL--AGL---TLEEIYDKILAGLGFTPEMQLQPT-----KSLSGGWRMRLALARA 212 (582)
T ss_pred cchHHHhhhhhccHHHHHHHHhhhhhh--ccc---hHHHHHHHHHHhCCCCHHHHhccc-----cccCcchhhHHHHHHH
Confidence 122222 12333333333332221111 011 334445558999999754 33334 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|..+|+||+|||||+.||..+..-+.+.|+... .|+|+++|| +..+-..|..|+.+.+-++
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHD-r~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHD-RNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEecc-HHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999988763 799999999 6788889999998877554
No 394
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.85 E-value=7.2e-23 Score=202.74 Aligned_cols=208 Identities=23% Similarity=0.267 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Q 045930 338 KQLSILTQRSSLNMSRDFGYY-WLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGG-FPSFIEEM 415 (661)
Q Consensus 338 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~s~~~-~~~~~~er 415 (661)
+|++.|++|+++..+||+.+. ..+++..++.++++|.+|.+++++.+++ ++.+++++...+..+..... .....+|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998544555 67777666666555444433 36788999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 045930 416 RVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPN 495 (661)
Q Consensus 416 ~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~ 495 (661)
..+.||+.++.|++.+|.+|+.+.+++..++.++++..+.|++.|++.+ +++.+++.++++..+..++|.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999987 77777788888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhh
Q 045930 496 YLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDL 550 (661)
Q Consensus 496 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef 550 (661)
...+..+.+.+..+++++||.+.+.+.+|++ ++| +.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~-~~~-i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSW-LRW-ISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHH-HHH-HHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999964 888 9999999999999998875
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.84 E-value=3.6e-20 Score=178.47 Aligned_cols=209 Identities=20% Similarity=0.285 Sum_probs=156.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-c----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-R---- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~---- 76 (661)
.++..++++.++. ..+++-|+|++++.|.-+.++|.||||||||||+|+|..-- ..|.|.++|... .
T Consensus 13 aievsgl~f~y~~-----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv---~~~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 13 AIEVSGLQFKYKV-----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV---GGGVVQVLGRSAFHDTSL 84 (291)
T ss_pred eEEEeccEEeccc-----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc---cCCeEEEcCcCccccccc
Confidence 3677788888764 34799999999999999999999999999999999997533 248889998752 1
Q ss_pred cccCeEEEEec----------CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccc
Q 045930 77 LDYGGVAYVTQ----------ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146 (661)
Q Consensus 77 ~~~~~i~yv~Q----------~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 146 (661)
.......|.-- +-.+...+++.+.| |+.. +. +. ++-+++++.+.++- + |..+.
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~-dp---~Rre~LI~iLDIdl-~------WRmHk 147 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GD-DP---ERREKLIDILDIDL-R------WRMHK 147 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHHHH-hhcc-----CC-Ch---hHhhhhhhheeccc-e------EEEee
Confidence 11122333322 22334466765543 4321 11 12 33455666665532 1 22346
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
+|-||||||.|++-|+..=++|+|||-|-.||.-++.++++.|++-.++ |.||+..||-- +-+.....+++.+++|++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl 226 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKL 226 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCee
Confidence 9999999999999999999999999999999999999999999998874 99999999985 568899999999999999
Q ss_pred EEecCCCChhH
Q 045930 226 VYFGEAKSAPT 236 (661)
Q Consensus 226 v~~G~~~~~~~ 236 (661)
+-.-+.++..+
T Consensus 227 ~~~l~~~~i~e 237 (291)
T KOG2355|consen 227 VDNLKYQKIKE 237 (291)
T ss_pred eeccccchhhh
Confidence 87655554444
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=1.3e-20 Score=189.49 Aligned_cols=169 Identities=20% Similarity=0.289 Sum_probs=108.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc----------------eeeEE--EECCeecccccCe-EEE
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV----------------MTGNV--LLNGKKRRLDYGG-VAY 84 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~----------------~~G~i--~~~g~~~~~~~~~-i~y 84 (661)
++++.+.+.+| +.+|+|||||||||||++|.-.+.+... ..+.| .+++.......+. +-+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~ 92 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF 92 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence 35667777676 8899999999999999999765422100 01111 1111111111122 224
Q ss_pred EecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccccccCHHHHHHHHHHHHH-
Q 045930 85 VTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIALEI- 161 (661)
Q Consensus 85 v~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~~~~LSgGerqRvsIa~aL- 161 (661)
++|+.. -+..+++.|.+ ..+.- .+..+.. +.+||||||||+.++.++
T Consensus 93 ~~q~~~~~~~~~~~~e~l-------------------------~~~~~~~~~~~~~-----~~~LS~G~~q~~~i~~~la 142 (213)
T cd03277 93 LPQDRVGEFAKLSPIELL-------------------------VKFREGEQLQELD-----PHHQSGGERSVSTMLYLLS 142 (213)
T ss_pred EchHHHHHHHhCChHhHh-------------------------eeeecCCCccccc-----hhhccccHHHHHHHHHHHH
Confidence 455431 22333333332 11110 1112222 346999999998877554
Q ss_pred ---hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C-CEEEEEecCCchHHHhhcC--eEEEEeCCe
Q 045930 162 ---LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-G-RTIISSIHQPSSEVFALFD--DLFLLSGGE 224 (661)
Q Consensus 162 ---~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g-~tvi~s~Hq~~~~i~~~~D--~v~lL~~G~ 224 (661)
+.+|+++++||||+|||+.++..+++.|++++++ | .++|++||+.. ++.+.+| ++++|.+|+
T Consensus 143 ~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 143 LQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCceEEEEEecCc
Confidence 5899999999999999999999999999999876 6 57999999964 5666666 788888886
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=4.3e-21 Score=191.20 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=110.6
Q ss_pred eeeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH-cCCCCCCceee-EEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 23 LLNGLTGYAEPAR-ILAVMGPSGSGKSTLLDALA-GRLSGNVVMTG-NVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 23 iL~~vs~~i~~Ge-~~aI~GpsGsGKSTLL~~La-G~~~~~~~~~G-~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
-..++|+++.+|+ +++|.|||||||||||++|+ +...+. .| .+-.. ....++|..|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~---~G~~vp~~------~~~~~~~~~~~~~--------- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQ---SGLPIPAA------EGSSLPVFENIFA--------- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHH---cCCCcccc------ccccCcCccEEEE---------
Confidence 3458999999994 89999999999999999998 211110 11 00000 0012333333211
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
.++.++..+..+ ..+|+||||++.|+++ +.+|+++++||||+|||+
T Consensus 78 ----------------------------~lg~~~~l~~~~-----s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~ 123 (200)
T cd03280 78 ----------------------------DIGDEQSIEQSL-----STFSSHMKNIARILQH-ADPDSLVLLDELGSGTDP 123 (200)
T ss_pred ----------------------------ecCchhhhhcCc-----chHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCH
Confidence 111111122222 3499999999999987 589999999999999999
Q ss_pred HHHHHHH-HHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 180 AAAFFVV-KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 180 ~~~~~i~-~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
..+..+. ..++++.+.|.++|++||++ ++.+++|+++.|.+|++++.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999996 47888887799999999983 688999999999999998874
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3e-20 Score=195.13 Aligned_cols=187 Identities=26% Similarity=0.369 Sum_probs=142.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|-++|+++-++ ..++++++++|-|.=..-+||+||||.||||||++|.|.+.|+ .|+..-| .+-+|
T Consensus 587 LGlH~VtFgy~-----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKn------hrL~i 652 (807)
T KOG0066|consen 587 LGLHDVTFGYP-----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKN------HRLRI 652 (807)
T ss_pred eecccccccCC-----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhcc------ceeee
Confidence 44556666554 3578999999999999999999999999999999999999884 6654332 33468
Q ss_pred EEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH
Q 045930 83 AYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 83 ~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
|+..|.. .+-..-|.-|.|.-.. +.+.+ .....|-.+||...++|.- ++.||||||-||++|.-
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq----~ARK~LG~fGL~sHAHTik----ikdLSGGQKaRValaeL 718 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF------NLPYQ----EARKQLGTFGLASHAHTIK----IKDLSGGQKARVALAEL 718 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc------CCChH----HHHHHhhhhhhhhccceEe----eeecCCcchHHHHHHHH
Confidence 9888863 4556667777765332 22333 3556788899988888852 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
-+..|+||||||||++||..+...+.+.|++. ...||+++||-+ .+.+---.++++.
T Consensus 719 al~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE 775 (807)
T KOG0066|consen 719 ALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVE 775 (807)
T ss_pred hcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEc
Confidence 99999999999999999999999998888876 358999999953 3333333444443
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=2.3e-20 Score=197.83 Aligned_cols=173 Identities=28% Similarity=0.445 Sum_probs=129.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-eeeEE-------EECCeecc-----c--ccCeEEEEec----CCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVV-MTGNV-------LLNGKKRR-----L--DYGGVAYVTQ----ENIM 91 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~-~~G~i-------~~~g~~~~-----~--~~~~i~yv~Q----~~~l 91 (661)
.+||++++|+||||-||||-+|+|+|.+.|+.- .++.- .+.|.... . ..-++..-+| -|..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 579999999999999999999999999988621 11100 01111100 0 0011222233 2222
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEe
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLD 171 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLD 171 (661)
+.. ||.|-|.-. +-+.+.+++++.++|++..|+-+. +|||||-||++||.+++++.+++++|
T Consensus 177 ~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FD 238 (591)
T COG1245 177 VKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFD 238 (591)
T ss_pred hcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEc
Confidence 333 677665421 112367899999999999999885 59999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 172 EPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 172 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
||||-||...+....+.+++|++.+++||++.||. ..+--++|-|.++.+
T Consensus 239 EpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 239 EPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred CCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 99999999999999999999999899999999996 445556888877763
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=3.7e-19 Score=174.04 Aligned_cols=74 Identities=27% Similarity=0.308 Sum_probs=68.4
Q ss_pred cCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 147 ISGGEKKRLSIALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 147 LSgGerqRvsIa~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
||||||||++||++++ .+|+++++|||++|||+..+..+.+.|++++++|.++|+++|++ +....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999987789999999996 45678999999963
No 401
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.7e-19 Score=194.04 Aligned_cols=195 Identities=27% Similarity=0.352 Sum_probs=150.9
Q ss_pred EEEEEEEEEeecCCccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 3 LVWEEVTVVVPNFGSGPTR-RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
+.+.++++.+ .++. .++.+++..++.-+-.+++|+||+||||+++++.|-..| ..|.+..++ +.+
T Consensus 363 l~i~~V~f~y-----~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~---~rgi~~~~~------r~r 428 (582)
T KOG0062|consen 363 LRISYVAFEY-----TPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP---TRGIVGRHP------RLR 428 (582)
T ss_pred eEEEeeeccC-----CCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc---ccceeeecc------cce
Confidence 4455555433 3334 689999999999999999999999999999999998776 367665543 356
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
++|-.|...=+-.+.|.+ +.+..+++ | +.+++ .+++-+..+||+. .+...+ .+||||||-||++|..
T Consensus 429 i~~f~Qhhvd~l~~~v~~-vd~~~~~~-p-G~~~e----e~r~hl~~~Gl~g~la~~si-----~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNA-VDFMEKSF-P-GKTEE----EIRRHLGSFGLSGELALQSI-----ASLSGGQKSRVAFAAC 496 (582)
T ss_pred ecchhHhhhhHHHHHhHH-HHHHHHhC-C-CCCHH----HHHHHHHhcCCCchhhhccc-----cccCCcchhHHHHHHH
Confidence 899999754333445543 33433333 2 33444 4667788999964 444444 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
...+|.+|+|||||+.||..+-..+.+.|+.. +-.||+++|| .+.+..+|+.+++.++|++.-
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999888876 4589999999 468889999999999999864
No 402
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.81 E-value=8.9e-20 Score=195.87 Aligned_cols=192 Identities=28% Similarity=0.385 Sum_probs=141.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.+.++|+-+..+. ...++..+||+++||-.+.|+||||||||+|.++|+|+.+- ++|.-......+
T Consensus 481 gI~lenIpvItP~-----~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---------y~g~L~~P~~~~ 546 (728)
T KOG0064|consen 481 GIILENIPVITPA-----GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---------YNGLLSIPRPNN 546 (728)
T ss_pred ceEEecCceeccC-----cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---------cCCeeecCCCcc
Confidence 3566777666553 35688999999999999999999999999999999999873 344332223456
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHh---cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc----cccccCHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAH---LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW----HWRGISGGEKKR 154 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~---l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~----~~~~LSgGerqR 154 (661)
+-|+||.|..- .-|.||.+.|.-. ++ .++.++ +..+.+|+.+.|++.+.+-.|-. ...-||||||||
T Consensus 547 mFYIPQRPYms-~gtlRDQIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR 620 (728)
T KOG0064|consen 547 IFYIPQRPYMS-GGTLRDQIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQR 620 (728)
T ss_pred eEeccCCCccC-cCcccceeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHH
Confidence 99999998765 4477887765311 10 012222 34667777777777766655421 124599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
+.+||.+-++|+.-+|||.||+..+.....+.+..++ -|.+.|-++|+|+ +.++-..++
T Consensus 621 ~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~h~~ll 679 (728)
T KOG0064|consen 621 MGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKYHTHLL 679 (728)
T ss_pred HHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHHHHHHH
Confidence 9999999999999999999999988877777766554 3899999999995 555444443
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.79 E-value=2.2e-19 Score=178.79 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=107.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.+... ..+++|.+.+++.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchhc
Confidence 56788887764 79999999999999999999998542 0112322211 1356777789999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~ 180 (661)
+.+... ....+. +++.++++.+++ .+|+++++||||+|+|+.
T Consensus 80 l~~~~s------~~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGIS------YFYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccC------hHHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 976531 112333 557777777763 689999999999999999
Q ss_pred HHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhh--cCeEEEE
Q 045930 181 AAFFVVK-ILKNIAHDGRTIISSIHQPSSEVFAL--FDDLFLL 220 (661)
Q Consensus 181 ~~~~i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~--~D~v~lL 220 (661)
.+..+.. .++++.+.|.++|++||++ +.+..+ .+++-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 9988754 7888887799999999997 344433 4444443
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.78 E-value=8.6e-19 Score=183.91 Aligned_cols=186 Identities=28% Similarity=0.408 Sum_probs=139.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----CceeeEEEECCeecccccCeEEEEecCC-CCCC
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-----VVMTGNVLLNGKKRRLDYGGVAYVTQEN-IMLG 93 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-----~~~~G~i~~~g~~~~~~~~~i~yv~Q~~-~l~~ 93 (661)
.+.+|+|||++++||++++|+|+|||||||||++|.|..... -..+|.|.+--.. ..+.+|-+. .-+.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 357999999999999999999999999999999999975321 1135655543211 234555542 2234
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 045930 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP 173 (661)
.-|+.|.+.- . +.+ -....++|...||.+..-... ..++||-|||.|+.||.++..+|.+++.||-
T Consensus 469 ~~tilehl~s----~-tGD------~~~AveILnraGlsDAvlyRr---~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 469 EVTILEHLRS----K-TGD------LNAAVEILNRAGLSDAVLYRR---KFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred chhHHHHHhh----c-cCc------hhHHHHHHHhhccchhhhhhc---cHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 5566665531 1 111 123568899999976322221 2357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhh-cCeEEEEeCCeEE
Q 045930 174 TSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFAL-FDDLFLLSGGETV 226 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v 226 (661)
.+.||..++..+.+-|.+++++ |.|++++||.| +.+-++ -|+++++.-|++.
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 9999999999999999999986 99999999997 456666 7898888766543
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.78 E-value=2.1e-19 Score=181.80 Aligned_cols=153 Identities=21% Similarity=0.247 Sum_probs=116.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEE-EEecCCCCCCCCCHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVA-YVTQENIMLGTLTVR 98 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~-yv~Q~~~l~~~lTV~ 98 (661)
.+.+.+|++++..+|++++|.||||+||||||++++-.. ...++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------------~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-------------------LMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-------------------HHHHhCCCcCcccEEEe-----
Confidence 356899999999999999999999999999999998210 001122 4444322111
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI--LTRPQLLFLDEP--- 173 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL--~~~P~lllLDEP--- 173 (661)
.++++++.+|+++.. . +++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~---~-----~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ---L-----KGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch---h-----cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 134455666665433 2 46999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 174 TSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|++||..+... ..++.+.+ .|.++|++||+ .++.+++|++..+++|++...+.
T Consensus 122 T~~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 99999988854 33355554 48999999997 47899999999999999987764
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.6e-18 Score=178.61 Aligned_cols=76 Identities=32% Similarity=0.427 Sum_probs=68.6
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 146 GISGGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
.|||||+||+++|++++. +|+++++||||+|||+.....+.+.|+++++ +.|+|+++|+|. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999987654 9999999999999999999999999999865 789999999973 568999999998
Q ss_pred CCe
Q 045930 222 GGE 224 (661)
Q Consensus 222 ~G~ 224 (661)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 653
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=5.5e-18 Score=190.64 Aligned_cols=128 Identities=27% Similarity=0.423 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCC---CEEEE
Q 045930 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRP---QLLFL 170 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P---~lllL 170 (661)
.|||.|...|.... + .-.+.-+.|.++||.-.. .|. ....|||||.||+-+|.+|..+. .+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~---LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIK---LGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEe---cCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 47888888887532 1 123445677888986432 222 12369999999999999999987 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCChhH
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSAPT 236 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~ 236 (661)
||||+||......++++.|.+|.+.|.|||++.|+. ++.+.+|.|+-| .+|++|+.|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999996 688999999998 4789999999987654
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=9.1e-18 Score=206.89 Aligned_cols=127 Identities=22% Similarity=0.303 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhC---CCEEE
Q 045930 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTR---PQLLF 169 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~---P~lll 169 (661)
.|||.|.+.|.... .+-.+.-+.|.++||... ..+.. ..|||||.||+-+|.+|..+ +.+++
T Consensus 1660 ~mtv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl~LGq~~-----~tLSGGE~qRikLa~~l~~~~~~~~lyi 1725 (1809)
T PRK00635 1660 QTPIEEVAETFPFL---------KKIQKPLQALIDNGLGYLPLGQNL-----SSLSLSEKIAIKIAKFLYLPPKHPTLFL 1725 (1809)
T ss_pred cCCHHHHHHHhhcc---------HHHHHHHHHHHHcCCCeeeCCCcC-----CccCchHHHHHHHHHHHhcCCCCCcEEE
Confidence 46788877775321 122345677889999753 22222 36999999999999999976 78999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCChhH
Q 045930 170 LDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSAPT 236 (661)
Q Consensus 170 LDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~ 236 (661)
|||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.|+-| ++|++|+.|+++++..
T Consensus 1726 lDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1726 LDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999999999999999999999999999999996 577779999999 3689999999887543
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.76 E-value=3.4e-18 Score=164.72 Aligned_cols=74 Identities=30% Similarity=0.399 Sum_probs=67.9
Q ss_pred cCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 147 ISGGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++ ++.+.+|+++.|..
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEEE
Confidence 99999999999999997 7899999999999999999999999999876689999999996 46678999999864
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=1.1e-17 Score=198.45 Aligned_cols=135 Identities=27% Similarity=0.432 Sum_probs=110.7
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhC
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMN------NEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTR 164 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~ 164 (661)
+..+||.|.+.|.-.+.++.... -++..++++ .|+.+||.+. .|+.++ .|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhC
Confidence 34689999999965543221100 123445554 6888999876 788875 5999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 165 P--QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 165 P--~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
| ++++|||||+|||+..+..+.+.|++++++|.|||+++|++. ++ ..+|+|++| .+|++++.|++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 7 999999999999999999999999999888999999999974 55 469999999 99999999987664
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=1.8e-17 Score=196.23 Aligned_cols=134 Identities=28% Similarity=0.431 Sum_probs=107.3
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhCC
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNN------EEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTRP 165 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P 165 (661)
-.|||.|.+.|...+.+...... ++..+++ +.+..+||... .++.++ +|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~-----tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAG-----TLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcC-----cCCHHHHHHHHHHHHHhhCC
Confidence 36899999998876543211000 1222233 23677888765 577664 59999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 166 --QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 166 --~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
++++|||||+|||+.++..+++.|++++++|.|||+++|++ +.+ ..||++++| ++|++++.|++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 89999999999999999999999999988899999999996 345 589999999 89999999987654
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.72 E-value=4.8e-18 Score=169.52 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=104.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHH
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYS 104 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 104 (661)
..++++.+|++++|+|||||||||||++|++.. .+ ..|... ......++|..|. +..+++.++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~---~~g~~~------~~~~~~i~~~dqi---~~~~~~~d~---- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA---QIGCFV------PAESASIPLVDRI---FTRIGAEDS---- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH---HcCCCc------cccccccCCcCEE---EEEecCccc----
Confidence 345566689999999999999999999999542 11 122110 0011223332221 111111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 045930 105 AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF 184 (661)
Q Consensus 105 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~ 184 (661)
.+..+ ..++++++ |++.+.+++.+|+++++||||+|+|+.....
T Consensus 85 ------------------------------i~~~~-----s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 85 ------------------------------ISDGR-----STFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred ------------------------------ccCCc-----eeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 11111 23555555 5777788899999999999999999999888
Q ss_pred HHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 185 VVK-ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 185 i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+.. .++.+.+.+.++|++||++ ++.+.+|++..+..|++...++..+
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 765 5677777789999999985 6778899999999999988887543
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.6e-18 Score=182.19 Aligned_cols=209 Identities=23% Similarity=0.324 Sum_probs=147.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCc---eeeEEEECCeec
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVV---MTGNVLLNGKKR 75 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~---~~~~~---~~G~i~~~g~~~ 75 (661)
.+.++|.+.+.. .+.++.|.|++|--|.-++++||||-||||||+-|+.+. +|++. ..-+|..+..+.
T Consensus 264 DIKiEnF~ISA~------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQ------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeecc------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 456677766543 367899999999999999999999999999999999874 44431 223343333321
Q ss_pred -----ccccCeEEEEecCCC-----CCCCCCHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 045930 76 -----RLDYGGVAYVTQENI-----MLGTLTVRETIAYSA-HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144 (661)
Q Consensus 76 -----~~~~~~i~yv~Q~~~-----l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 144 (661)
....++...+..++. --...|+.|-+.-.+ .+|- ......+.+..++|.-+|.+.-...+.-
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~rPt---- 410 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQERPT---- 410 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcCCc----
Confidence 001111222211111 123457776665332 3331 1122234567788999998764433332
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
...|||-|-|||+||||...|-+|.|||||+.||-....-+-+.|+.+. +|.++++||- ..+-..|..|+.|++-+
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdIIHLD~qk 486 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDIIHLDNQK 486 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHhhhhhhh
Confidence 3699999999999999999999999999999999999988888998885 5999999995 57889999999999877
Q ss_pred EEE
Q 045930 225 TVY 227 (661)
Q Consensus 225 ~v~ 227 (661)
+-|
T Consensus 487 Lhy 489 (807)
T KOG0066|consen 487 LHY 489 (807)
T ss_pred hhh
Confidence 644
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=4.4e-16 Score=162.38 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=62.9
Q ss_pred cccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc-
Q 045930 145 RGISGGEKKRLSIALEIL---------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF- 214 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~---------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~- 214 (661)
+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+. ..+..++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccchhc
Confidence 348999999999999985 7999999999999999999999999998753 345555553 3566777
Q ss_pred --CeEEEEeCCeE
Q 045930 215 --DDLFLLSGGET 225 (661)
Q Consensus 215 --D~v~lL~~G~~ 225 (661)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999985
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.66 E-value=2.1e-16 Score=157.79 Aligned_cols=142 Identities=21% Similarity=0.310 Sum_probs=101.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
++.+.+|+++..++|++++|+||||+|||||++++++..- -+++ | .|| +...+.+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-----la~~---G----------~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-----MAQI---G----------CFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-----HHHc---C----------CCc---chhhcCccChh
Confidence 3579999999999999999999999999999999998631 0100 0 122 23344556666
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
++... ++..+..++.. ..+|+|++|+ +.+.+++++|+++++|||++|+|+
T Consensus 74 ~I~~~------------------------~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 74 RLLSR------------------------LSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred heeEe------------------------cCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 66322 22222222222 3489888865 566778999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 045930 180 AAAFFV-VKILKNIAHDGRTIISSIHQPSSEVFALF 214 (661)
Q Consensus 180 ~~~~~i-~~~L~~la~~g~tvi~s~Hq~~~~i~~~~ 214 (661)
.....+ ...++.+.+.|.++|++||+. ++.+.+
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~--~l~~~~ 157 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFR--DIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChH--HHHHHh
Confidence 876665 456788887899999999995 344443
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.63 E-value=1.1e-15 Score=154.06 Aligned_cols=158 Identities=20% Similarity=0.144 Sum_probs=110.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
++.+.+|++++.++ ++++|.|||||||||||++|++..- -|+ .|.........++++.| +++.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~-----l~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL-----LAQ---IGSFVPASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH-----Hhc---cCCeeccccceecceee---EeccCCchh
Confidence 34689999999887 9999999999999999999987531 111 12122112345677754 566777777
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC--HHHHHHHHHHHHHhhCCCEEEEeCC---C
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS--GGEKKRLSIALEILTRPQLLFLDEP---T 174 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--gGerqRvsIa~aL~~~P~lllLDEP---t 174 (661)
++..+ .| ..|+++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 66432 11 1233444444445679999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 175 SGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 175 sGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
+++|.... ....++.+.+. +.++|++||+. ++.+++|++.-+.+|++...+..++..
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 88887552 23455556665 89999999994 688899998888889988777665543
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.57 E-value=1.6e-14 Score=152.61 Aligned_cols=178 Identities=23% Similarity=0.359 Sum_probs=137.5
Q ss_pred ccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCC
Q 045930 20 TRRLLNGLTGYAEPA-----RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGT 94 (661)
Q Consensus 20 ~~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~ 94 (661)
.+.-+-+..+.|+.| |++..+|.||-|||||+++++|+++++ ..|+|- .-.++|=||.-.-=.+
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~p---------~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEIP---------VLNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCccc---------ccceeccccccCcccc
Confidence 445667777777776 578999999999999999999999875 233332 1247788886544445
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 045930 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT 174 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPt 174 (661)
-|||+.+.--.+- .-...+.+.++++-|.+++..|.-+. +|||||.|||++|..|-..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqevq-----~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEVQ-----GLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHhh-----cCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 6899887532210 11123568889999999998888774 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 175 SGLDSAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 175 sGLD~~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
+-||+..+...-+.+++.- +.++|-.++.||- ...--++||+++..
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdf-ImaTYladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHH-HHHHhhcceeEEEe
Confidence 9999999999988888864 4578999999994 23445789987654
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.53 E-value=4.5e-14 Score=146.54 Aligned_cols=137 Identities=26% Similarity=0.296 Sum_probs=92.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------DYGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
.-++|+||||||||||+++|+|.++++ +|+|.++|++... ..+.+++++|.+. .+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch------
Confidence 578999999999999999999999874 8999999987531 1233567777542 23444443311
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 045930 109 LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188 (661)
Q Consensus 109 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~ 188 (661)
+. .| ........+|+++++|||++ ...+...
T Consensus 182 ------k~--------------------------------~~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 182 ------KA--------------------------------EG-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ------HH--------------------------------HH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 00 01 12223336999999999974 2334444
Q ss_pred HHHHHhcCCEEEEEecCCchH-H-----------HhhcCeEEEEeCCeEEEecCCCC
Q 045930 189 LKNIAHDGRTIISSIHQPSSE-V-----------FALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 189 L~~la~~g~tvi~s~Hq~~~~-i-----------~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++.+ ++|.+||+++|++..+ + ..+|||+++|++|+ ..|.+++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 5554 4699999999986432 2 26799999999887 5555543
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.52 E-value=7.1e-15 Score=144.76 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=58.1
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV-KILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~-~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEE
Confidence 48887776433333 34599999999999999999888775 556777774 89999999996 578888864444444
Q ss_pred eEEE
Q 045930 224 ETVY 227 (661)
Q Consensus 224 ~~v~ 227 (661)
+...
T Consensus 138 ~~~~ 141 (185)
T smart00534 138 HMSA 141 (185)
T ss_pred EEEE
Confidence 4433
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.47 E-value=4e-14 Score=142.90 Aligned_cols=88 Identities=30% Similarity=0.451 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 045930 120 DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195 (661)
Q Consensus 120 ~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~ 195 (661)
+.+.+.+...++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 445666666666542 49999999999997664 46899999999999999999999999999875
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 196 GRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 196 g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
+.-+|++||++ ..++.+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999995 6899999998774
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.44 E-value=4.2e-12 Score=137.76 Aligned_cols=77 Identities=23% Similarity=0.366 Sum_probs=65.3
Q ss_pred cccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc-
Q 045930 145 RGISGGEKKRLSIALEIL---------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF- 214 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~---------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~- 214 (661)
..+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence 468999999999999886 799999999999999999999999988764 458889999863 455553
Q ss_pred -CeEEEEeCCeE
Q 045930 215 -DDLFLLSGGET 225 (661)
Q Consensus 215 -D~v~lL~~G~~ 225 (661)
++++.+.+|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 47899999986
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=8.1e-13 Score=133.05 Aligned_cols=129 Identities=23% Similarity=0.257 Sum_probs=87.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCceeeEEEECCeecccccCeEEEEecCCCCC-CCCCHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR--LSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML-GTLTVR 98 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~-~~lTV~ 98 (661)
.+=+|+++.=..+..++|.||||+||||||+.++.. +. ..|..... ..-.++|..|....+ ...++.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la----~~G~~v~a------~~~~~~~~d~i~~~l~~~~si~ 86 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA----HIGSFVPA------DSATIGLVDKIFTRMSSRESVS 86 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH----hCCCeeEc------CCcEEeeeeeeeeeeCCccChh
Confidence 344555553222389999999999999999999842 21 13443321 123467777753211 111111
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS--GGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--gGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
+ ++| .-|.||++++++++.+|+++++|||++|
T Consensus 87 ~----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~g 120 (213)
T cd03281 87 S----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKG 120 (213)
T ss_pred h----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence 1 122 3567999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhc---CCEEEEEecCC
Q 045930 177 LDSAAAFFV-VKILKNIAHD---GRTIISSIHQP 206 (661)
Q Consensus 177 LD~~~~~~i-~~~L~~la~~---g~tvi~s~Hq~ 206 (661)
+|+.....+ ...++++.+. +.++|++||++
T Consensus 121 td~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 999865555 5688888764 35899999996
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.39 E-value=6.8e-13 Score=155.93 Aligned_cols=128 Identities=23% Similarity=0.296 Sum_probs=89.9
Q ss_pred eEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCC-CCCCceeeEEEECCeecccccCeEEEEecCCC-CCCCCCHHHHHHH
Q 045930 27 LTGYAEPA-RILAVMGPSGSGKSTLLDALAGRL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI-MLGTLTVRETIAY 103 (661)
Q Consensus 27 vs~~i~~G-e~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~-l~~~lTV~E~l~~ 103 (661)
+|+.+.+| ++++|.||||+||||||++|+|.. .+ ..| .+||.... .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G----------------~~Vpa~~~~~~~---~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF---QSG----------------IPIPANEHSEIP---YFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH---HhC----------------CCccCCcccccc---chhhee-
Confidence 78888887 999999999999999999999872 21 122 12333211 111 111110
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 045930 104 SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183 (661)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~ 183 (661)
.. ...+ +.+. . ....+|+|+++++.|++.+ .+|+++++|||++|+|+....
T Consensus 371 -~~------i~~~---~si~-------------~-----~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 -AD------IGDE---QSIE-------------Q-----NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred -ee------cChH---hHHh-------------h-----hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00 0000 0000 0 1235999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHhcCCEEEEEecCC
Q 045930 184 FV-VKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 184 ~i-~~~L~~la~~g~tvi~s~Hq~ 206 (661)
.+ ..+|+.+.+.|.++|++||+.
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~ 445 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChH
Confidence 98 578888888899999999995
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.34 E-value=1.5e-12 Score=115.77 Aligned_cols=72 Identities=19% Similarity=0.101 Sum_probs=58.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----cccCeEEEEecCCCCCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----LDYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~~~~~i~yv~Q~~~l~~~l 95 (661)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.+.. ...+.++|++|+ ++ .-
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hh
Confidence 46899999999999999999999999999999986 577889987642 123456777776 44 34
Q ss_pred CHHHHHHHH
Q 045930 96 TVRETIAYS 104 (661)
Q Consensus 96 TV~E~l~~~ 104 (661)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 899999874
No 425
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.34 E-value=1.8e-10 Score=117.45 Aligned_cols=225 Identities=17% Similarity=0.103 Sum_probs=153.1
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CCC--hHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-H
Q 045930 346 RSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDV-GTN--YTAIY----ARGSCAAFISGFMTFMSIGGFPSFIEEMR-V 417 (661)
Q Consensus 346 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~-~~~--~~~i~----~r~~~~~f~~~~~~~~s~~~~~~~~~er~-v 417 (661)
|+++...|||..+..-+++-+++.+++|.+|-+. +.+ ..+.. --.|.+.+........ .+.. ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhH-HHHHHHhC
Confidence 6778889999988888888888888888887542 111 11111 1112222111111111 1121 222332 2
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 045930 418 FSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYL 497 (661)
Q Consensus 418 f~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~ 497 (661)
+.++....=-+...|+++|.+.+++..++..+++..+.|++.+++.. .++.+++..++...+..++|.++++.+++..
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPS--GVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33333333447889999999999999999999999999888776543 3444444455556677899999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHHHHHHhhhCC
Q 045930 498 TGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGM 577 (661)
Q Consensus 498 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~ 577 (661)
.+..+.+.+..+++++||.+.|.+.+|++ ++| +.|++|.+|+.|++-.. ..|.
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~-~~~-i~~~~P~~~~~~~~r~~-~~~~------------------------ 208 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAW-MQG-LAKINPLTYAVDGARYY-LAGV------------------------ 208 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHH-HHH-HHHHCcHHHHHHHHHHH-HhCC------------------------
Confidence 88888888888899999999999999985 888 99999999999985432 2110
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Q 045930 578 NLDRSKWWDLAVVVAILISYRVIFF 602 (661)
Q Consensus 578 ~~~~~~w~~~~il~~~~~~~~~l~~ 602 (661)
..-.+.|.++++++++.+++.+++.
T Consensus 209 ~~~~~~~~~~~~l~~~~~~~~~l~~ 233 (236)
T TIGR01247 209 SPTFPLEQDLLVLTLLAVIFVGIAA 233 (236)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHH
Confidence 0001256788888888887776654
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.34 E-value=1.5e-12 Score=137.94 Aligned_cols=172 Identities=27% Similarity=0.359 Sum_probs=122.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--eeeEEEEC------Ceeccccc--------C---eEEEEecCCCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVV--MTGNVLLN------GKKRRLDY--------G---GVAYVTQENIML 92 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~--~~G~i~~~------g~~~~~~~--------~---~i~yv~Q~~~l~ 92 (661)
+||++.+++|.||-||||-|++++|..+|+.. ..+-.+-+ |....... + .--||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999987520 11111100 10000000 0 001111111111
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDE 172 (661)
..+|.+++. ..+.++..+++++.+.|.+..|+-+. .|||||-||.+||++-+.+.++.++||
T Consensus 178 -k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 -KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred -HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecC
Confidence 113333332 12223356788888999988888775 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 173 PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
|.+-||...+..-...++.+....+=||++.||. +.+.-+.|-+..|.+
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEec
Confidence 9999999999999999999998889999999996 456667888888864
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.33 E-value=1.2e-11 Score=124.97 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=91.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR-LSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~-~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
+.+.+|+++.+++|++++|+||||+||||+|+++++. ..+ ..|...... . -.++|..|- +..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a~-~-----~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPAS-S-----ATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEcC-c-----eEEeccceE---EEEecCcc
Confidence 5689999999999999999999999999999999994 333 245433221 1 113332221 11100111
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS--GGEKKRLSIALEILTRPQLLFLDEPTSGL 177 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--gGerqRvsIa~aL~~~P~lllLDEPtsGL 177 (661)
.+. .++| ..|-+|++-...-+++|+++|+|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0122 24555666666667789999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhc-CCEEEEEecCCchHHHhhc
Q 045930 178 DSAAAFFV-VKILKNIAHD-GRTIISSIHQPSSEVFALF 214 (661)
Q Consensus 178 D~~~~~~i-~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~ 214 (661)
|+.....+ ...++.+.+. +.++|++||++ ++.++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 98777775 5677888776 89999999996 344444
No 428
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.28 E-value=8.4e-12 Score=143.13 Aligned_cols=77 Identities=26% Similarity=0.382 Sum_probs=70.2
Q ss_pred cccCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 145 RGISGGEKKRLSIALEILTR----PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~----P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||+| .+...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~--~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLP--QVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999985 89999999997 355789999999
Q ss_pred eCCe
Q 045930 221 SGGE 224 (661)
Q Consensus 221 ~~G~ 224 (661)
.+|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.27 E-value=5.9e-12 Score=148.40 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=64.1
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK-ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
..+|+|++|++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++ ......+|+..+. ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-EE
Confidence 35999999999999988 8999999999999999999988864 6777877799999999995 3333345544443 45
Q ss_pred eEEEe
Q 045930 224 ETVYF 228 (661)
Q Consensus 224 ~~v~~ 228 (661)
.+.++
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 430
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.27 E-value=1.3e-10 Score=116.34 Aligned_cols=150 Identities=13% Similarity=0.065 Sum_probs=119.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045930 428 GVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYL 507 (661)
Q Consensus 428 ~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~ 507 (661)
+.+.++++|.+..++..++.+++...+.|++.|++++ +++.+++.+++...+..+++.++++++++...+ ++...+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 5567899999999999999999999999999999875 566677777777788889999999999876443 334445
Q ss_pred HHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHHHHHHhhhCCCCCchhHHHH
Q 045930 508 GIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDL 587 (661)
Q Consensus 508 ~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~ 587 (661)
.+.++++|.+.|.+.+|++ ++| +.|++|.+|+.+++-.+.+.| . ..+.|.++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~-~~~-i~~~~P~t~~~~~~r~~~~~~-------------------------~-~~~~~~~~ 185 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAF-FQA-IHPFLPMTYSVNGLRQLISGG-------------------------N-DGTLWQAV 185 (208)
T ss_pred HHHHccCCCccchhhCHHH-HHH-hhhhCcHHHHHHHHHHHHhCC-------------------------c-HHHHHHHH
Confidence 5666788988999999985 898 999999999999986554321 0 12368889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 045930 588 AVVVAILISYRVIFFAILKFRE 609 (661)
Q Consensus 588 ~il~~~~~~~~~l~~~~L~~~~ 609 (661)
++++++.+++.+++....|.++
T Consensus 186 ~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 186 AVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999989888887666543
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.26 E-value=9.5e-12 Score=125.12 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPT-----SGLDSAAAFFVVKILKNIAH 194 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPt-----sGLD~~~~~~i~~~L~~la~ 194 (661)
-|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.25 E-value=5.9e-11 Score=120.97 Aligned_cols=152 Identities=21% Similarity=0.218 Sum_probs=94.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHh
Q 045930 28 TGYAEPARILAVMGPSGSGKSTL-LDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAH 106 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTL-L~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 106 (661)
.+-+++|++++|.|+|||||||| ++.+++..+. | ..+.|+..+ .|..+.+.....
T Consensus 18 ~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-----g-------------~~~~yi~~e------~~~~~~~~~~~~ 73 (230)
T PRK08533 18 GGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN-----G-------------YSVSYVSTQ------LTTTEFIKQMMS 73 (230)
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-----C-------------CcEEEEeCC------CCHHHHHHHHHH
Confidence 34589999999999999999999 7888886542 1 124555532 355666655443
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----C
Q 045930 107 LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL----TRPQLLFLDEPTSGL----D 178 (661)
Q Consensus 107 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~----~~P~lllLDEPtsGL----D 178 (661)
+.. . +++.... |.-...+.. ..+|+++.++..+.+.+- .+|+++++||||+++ |
T Consensus 74 ~g~----~-------~~~~~~~-~~l~~~~~~------~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d 135 (230)
T PRK08533 74 LGY----D-------INKKLIS-GKLLYIPVY------PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS 135 (230)
T ss_pred hCC----c-------hHHHhhc-CcEEEEEec------ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc
Confidence 321 1 1111111 100011111 125666655544433332 369999999999999 8
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCch------HHHhhcCeEEEEe
Q 045930 179 SAAAFFVVKILKNIAHDGRTIISSIHQPSS------EVFALFDDLFLLS 221 (661)
Q Consensus 179 ~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~------~i~~~~D~v~lL~ 221 (661)
+.....+.+.++.+++.|.|+++++|+... .+..++|-|+.|+
T Consensus 136 ~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 136 EVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 888888999999998888888776664310 1234567777776
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=99.24 E-value=2.1e-11 Score=139.05 Aligned_cols=77 Identities=26% Similarity=0.459 Sum_probs=69.9
Q ss_pred cccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 145 RGISGGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+| .+..++|+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 4589999999999999997 5899999999999999999999999999975 69999999998 366899999999
Q ss_pred eCCe
Q 045930 221 SGGE 224 (661)
Q Consensus 221 ~~G~ 224 (661)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8653
No 434
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=3e-11 Score=147.98 Aligned_cols=79 Identities=23% Similarity=0.216 Sum_probs=73.1
Q ss_pred ccccCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh
Q 045930 144 WRGISGGEKKRLSIALEILT----------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~----------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~ 213 (661)
++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|+++||++ .....+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHhh
Confidence 46799999999999999986 7999999999999999999999999999988899999999997 578889
Q ss_pred cCeEEEEeCC
Q 045930 214 FDDLFLLSGG 223 (661)
Q Consensus 214 ~D~v~lL~~G 223 (661)
+|+|.|++.|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 9999999743
No 435
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.22 E-value=2.5e-10 Score=126.05 Aligned_cols=171 Identities=23% Similarity=0.297 Sum_probs=111.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec---c----------cccCeEEEEec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR---R----------LDYGGVAYVTQ 87 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~---~----------~~~~~i~yv~Q 87 (661)
.++++++ +.+.+|+.++|+|+||+|||||+++|+|..++. .|.|.+.|+.. . ..++.+.++.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 4689999 999999999999999999999999999998774 68888865432 1 11356888876
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH-HHHhhCCC
Q 045930 88 ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA-LEILTRPQ 166 (661)
Q Consensus 88 ~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa-~aL~~~P~ 166 (661)
.+.-. -.+....+.+ -.+.+.+.+-|- |.++= ...++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChH-----HHHHHHHHHH----
Confidence 44211 0111111111 011222222231 11110 00111 11111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHh--cCC-----EEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 167 LLFLDEP--TSGLDSAAAFFVVKILKNIAH--DGR-----TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 167 lllLDEP--tsGLD~~~~~~i~~~L~~la~--~g~-----tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+.+.|| |+|+|+.....+.+.++++.+ +|. ||++.+||.. + .+||++..+.+|+++.+++..
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHH
Confidence 123564 789999999999999999984 575 9999999975 3 789999999999999999854
No 436
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.21 E-value=3.6e-11 Score=121.01 Aligned_cols=63 Identities=27% Similarity=0.474 Sum_probs=54.4
Q ss_pred cccCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 145 RGISGGEKKRLSIALEILTRP---QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P---~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
..+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+.-||+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999998877 899999999999999999999999888777889999999973
No 437
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=4.3e-11 Score=120.72 Aligned_cols=133 Identities=23% Similarity=0.219 Sum_probs=89.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+-+|+++..++|++++|.||||+||||+++++++..--. ..|- ........++++ |.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G~------~vpa~~~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMGM------DVPAKSMRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcCC------ccCccccEeccc---cEEEEecCcccc
Confidence 56889999999999999999999999999999999863100 0111 110001111111 122222222222
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS--GGEKKRLSIALEILTRPQLLFLDEPTSGLD 178 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--gGerqRvsIa~aL~~~P~lllLDEPtsGLD 178 (661)
+.. ++| ..|-+|++-....+++|+++++|||.+|+|
T Consensus 86 ~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~ 123 (218)
T cd03286 86 IMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTS 123 (218)
T ss_pred ccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCC
Confidence 210 111 135566665666667899999999999999
Q ss_pred HHHHHHHHHH-HHHHHhc-CCEEEEEecCC
Q 045930 179 SAAAFFVVKI-LKNIAHD-GRTIISSIHQP 206 (661)
Q Consensus 179 ~~~~~~i~~~-L~~la~~-g~tvi~s~Hq~ 206 (661)
+.....+... ++.+.+. +.++|++||++
T Consensus 124 ~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 124 THDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 9999998887 7888876 89999999996
No 438
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.21 E-value=2.5e-11 Score=139.37 Aligned_cols=78 Identities=26% Similarity=0.376 Sum_probs=69.2
Q ss_pred ccccCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh
Q 045930 144 WRGISGGEKKRLSIALEIL----------TRPQLLFLDEPT-SGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFA 212 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~----------~~P~lllLDEPt-sGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~ 212 (661)
...||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ +|.|||++||++ ....
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hchh
Confidence 4679999999999999887 599999999998 789999999999999998 589999999996 4567
Q ss_pred hcCeEEEEeC-CeE
Q 045930 213 LFDDLFLLSG-GET 225 (661)
Q Consensus 213 ~~D~v~lL~~-G~~ 225 (661)
.+|++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 8999999985 553
No 439
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.20 E-value=3.4e-09 Score=109.59 Aligned_cols=232 Identities=13% Similarity=0.073 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH
Q 045930 340 LSILTQRSSLNMSRD-FGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSI-GGFPSFIEEMRV 417 (661)
Q Consensus 340 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~s~-~~~~~~~~er~v 417 (661)
...+++|+++..+|+ |.....-+++-++.-+++|..|-....+..+. + ..-|.+-+.+.+..+ +++- -.--.+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~-~--y~~f~~pg~l~~~~~~~~~~--~~~~~~ 81 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGV-S--YAAFLAAGMVATSAMTASTF--ETIYAT 81 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-C--HHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 456779999999999 99888888888888888888875431111111 1 111222222222111 0100 000123
Q ss_pred HHHHhcCCCC--------cHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 418 FSRERLNGHY--------GVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMI 489 (661)
Q Consensus 418 f~rE~~~g~Y--------~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i 489 (661)
+.|||.+|.+ ++..+.+|+.+.+.-..++..++...+.+ ..|..+. ...+.....+++...+..++|+++
T Consensus 82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~ 159 (253)
T TIGR01291 82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIEW-WSLIYILPVIALTGLAFASLSMLV 159 (253)
T ss_pred HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444442 78899999999887766666665554443 3344443 334444444455556667899999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHHH
Q 045930 490 ASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDV 569 (661)
Q Consensus 490 ~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~ 569 (661)
+++.++.+....+...++.+++..||.+.+.+.+|++ +++ +.+++|+.|+.|++-.. +.|
T Consensus 160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~-lq~-i~~~nPlt~~v~~~R~~-~~g----------------- 219 (253)
T TIGR01291 160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDV-IQG-MTHFLPLAHSIDDIRPV-MLG----------------- 219 (253)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHH-HHH-HHHHCcHHHHHHHHHHH-HhC-----------------
Confidence 9999999988888888899999999999999999985 787 99999999999985322 211
Q ss_pred HHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 570 ILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILK 606 (661)
Q Consensus 570 ~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~ 606 (661)
-+ ..+.|.++++++++.+++..++....|
T Consensus 220 -------~~-~~~~~~~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 220 -------GP-GTQVGLHLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred -------CC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 112456778888888877777665443
No 440
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.19 E-value=5.2e-11 Score=122.40 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=63.0
Q ss_pred cccCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 045930 145 RGISGGE--------KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF-VVKILKNIAHDGRTIISSIHQPSSEVFALFD 215 (661)
Q Consensus 145 ~~LSgGe--------rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~-i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D 215 (661)
+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+. .....+|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~l--a~~~~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRL--AERRIFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHH--hhCCCCC
Confidence 4589999 9999999999999999999 999999655443 54 555554678999999995 3567899
Q ss_pred eEEEEeCCeE
Q 045930 216 DLFLLSGGET 225 (661)
Q Consensus 216 ~v~lL~~G~~ 225 (661)
.|.+|+.|+.
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999986
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.18 E-value=2.3e-10 Score=111.97 Aligned_cols=145 Identities=21% Similarity=0.164 Sum_probs=97.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHH
Q 045930 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNE 116 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~ 116 (661)
+.|.||+|+|||||.--++-..-. +| ..+.|+.=+ .|..+.+.....+. ...+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------~g-------~~v~~~s~e------~~~~~~~~~~~~~g----~~~~ 54 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------RG-------EPGLYVTLE------ESPEELIENAESLG----WDLE 54 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------CC-------CcEEEEECC------CCHHHHHHHHHHcC----CChH
Confidence 679999999999998655432110 11 124454322 24555554443331 1111
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccccccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHH
Q 045930 117 EITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK------RLSIALEILTRPQLLFLDEPTSGLD---SAAAFFVVK 187 (661)
Q Consensus 117 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq------RvsIa~aL~~~P~lllLDEPtsGLD---~~~~~~i~~ 187 (661)
+ +...|+....|... ..+|+||+| +.........+|+++++|||++.+| ......+.+
T Consensus 55 -------~-l~~~g~l~~~d~~~-----~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~ 121 (187)
T cd01124 55 -------R-LEDEGLLAIVDADP-----DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR 121 (187)
T ss_pred -------H-HHhcCCeEEEecCc-----cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH
Confidence 1 22334444444433 358999998 4555555667999999999999999 888888889
Q ss_pred HHHHHHhcCCEEEEEecCCch--------HHHhhcCeEEEEe
Q 045930 188 ILKNIAHDGRTIISSIHQPSS--------EVFALFDDLFLLS 221 (661)
Q Consensus 188 ~L~~la~~g~tvi~s~Hq~~~--------~i~~~~D~v~lL~ 221 (661)
.++.+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 122 l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 122 LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 999998889999999998643 2678899999887
No 442
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.18 E-value=1.7e-10 Score=131.02 Aligned_cols=137 Identities=24% Similarity=0.420 Sum_probs=105.2
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH------HHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhC
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA------ITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTR 164 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~ 164 (661)
+..|++.|.+.|...+.+.. ....-.+..+.++ |..+||.-. .++..+ .|||||.||+-+|..|-++
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~-----TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAG-----TLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCC-----CcChhHHHHHHHHHHhccc
Confidence 34678889988887765321 1111112222222 344677643 455444 5999999999999999887
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCChhH
Q 045930 165 --PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSAPT 236 (661)
Q Consensus 165 --P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~ 236 (661)
-=+++||||+-||-+....++++.|++|.+.|-|+|++.||+ +....+|+|+-+ .+|+|++.|++++++.
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 346799999999999999999999999999999999999995 688899999998 4799999999987654
No 443
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.18 E-value=5.1e-09 Score=106.69 Aligned_cols=219 Identities=11% Similarity=-0.019 Sum_probs=135.3
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHhcCCCCc
Q 045930 352 SRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYA-RGSCAAFISGFMTFMSIGGFPSFIEEMR--VFSRERLNGHYG 428 (661)
Q Consensus 352 ~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~-r~~~~~f~~~~~~~~s~~~~~~~~~er~--vf~rE~~~g~Y~ 428 (661)
+|||.....-+.+.+++-++.+.+|-+-. +.+..+. -.+.+.+...+ +..+..--...+||. .+.|=+.... +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAIS--TAFTGQAIAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCHHHHHhcCCC-c
Confidence 68999888888888888777777776521 1111111 11111111111 111111112333433 3444443333 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 045930 429 VAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVP---NYLTGIIIGAG 505 (661)
Q Consensus 429 ~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p---~~~~a~~~~~~ 505 (661)
+..|+++|.+..++..++..+++. +++++.|++.....+ ..++.+......+.+++.+++++++ +.+.+..++..
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999988888777655554 556778988654332 2233333333444566666777664 44444677778
Q ss_pred HHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHHHHHHhhhCCCCCchhHH
Q 045930 506 YLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWW 585 (661)
Q Consensus 506 ~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~ 585 (661)
+..+++++||.+.|.+.+|+| ++| +++++|++|+.+++-.- +.| +-+ ....|.
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~-lq~-i~~~~P~t~~~~~~r~~-~~~-----------------------~~~-~~~~~~ 208 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTW-IKW-FVRVQPSSYATEALRQA-ATV-----------------------SVD-TFGAVR 208 (232)
T ss_pred HHHHHHHHhheeeecccccHH-HHH-HHHhCcHHHHHHHHHHH-HcC-----------------------CCC-hhhHHH
Confidence 888899999999999999985 899 99999999999976432 211 001 113577
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045930 586 DLAVVVAILISYRVIFFA 603 (661)
Q Consensus 586 ~~~il~~~~~~~~~l~~~ 603 (661)
++++++++.+++..++..
T Consensus 209 ~~~~l~~~~~v~~~la~~ 226 (232)
T TIGR00025 209 DLVVVLAFWVALAALAAI 226 (232)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777666654
No 444
>PRK13695 putative NTPase; Provisional
Probab=99.16 E-value=2.4e-11 Score=118.30 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=64.2
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEP--TSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEP--tsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.+||+|+.+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 5999999999999999999999999995 43444 445677777766799999999983 577889999999999
Q ss_pred eEEEe
Q 045930 224 ETVYF 228 (661)
Q Consensus 224 ~~v~~ 228 (661)
++++.
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 98665
No 445
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.07 E-value=1.6e-09 Score=104.15 Aligned_cols=67 Identities=25% Similarity=0.415 Sum_probs=54.9
Q ss_pred ccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 139 vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
+|.......|.||-=---+.+. ..+.-+++||||-++|.+.-+..+...|+++++.|.-+|+.||.|
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSP 188 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSP 188 (233)
T ss_pred cCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecCh
Confidence 3333345689999654444443 456789999999999999999999999999999999999999998
No 446
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.06 E-value=1.8e-08 Score=104.00 Aligned_cols=202 Identities=10% Similarity=0.067 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CC-------ChHHH--HHHHHHHHHHHHHHHHHHHhH
Q 045930 338 KQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDV-GT-------NYTAI--YARGSCAAFISGFMTFMSIGG 407 (661)
Q Consensus 338 ~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~-~~-------~~~~i--~~r~~~~~f~~~~~~~~s~~~ 407 (661)
+++..+++|.++...|||..+..-+++-+++-+++|.+|-.+ +. +..+. +--.|++.+...+..+. ++
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--~~ 79 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--SS 79 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH--hh
Confidence 678999999999999999999999999999999999988542 11 10011 11112222211111111 11
Q ss_pred HHHHHHHH--HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 045930 408 FPSFIEEM--RVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESC 485 (661)
Q Consensus 408 ~~~~~~er--~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~ 485 (661)
. ....|| ..+.+=+... .+...+.+++++..+-..++..++...+.+ ..|.+.+...++.....+++...+..++
T Consensus 80 ~-~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~-~~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 80 L-SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAA-LVGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred h-HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 1 122222 2333333333 378889999999998777776655544443 2366655444443344444455667789
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCC---cccccccccccccHHHHHHHHHH
Q 045930 486 MMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDI---PKVFWRYPIAYINYGAWALQGAY 546 (661)
Q Consensus 486 ~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~w~w~i~yis~~~ya~e~l~ 546 (661)
|+++++++++......+.+.++.+++..||.+.+.+.+ |++ ++| +.++||+.|..|++=
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~-l~~-i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTW-LYW-ICALNPFTHAVELVR 218 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHH-HHH-HHHhCcHHHHHHHHH
Confidence 99999999998877777778888888999999888666 653 677 999999999998763
No 447
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.05 E-value=1.6e-10 Score=141.12 Aligned_cols=78 Identities=28% Similarity=0.244 Sum_probs=69.1
Q ss_pred ccccCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 045930 144 WRGISGGEKKRLSIALEILT--------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFD 215 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~--------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D 215 (661)
++.|||||+++++||++|+. +|++||+||||+|||+.+...+++.|..+++.|+||+++||.+ .....+-.
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i~~ 1025 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERIPV 1025 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhccc
Confidence 45799999999999999996 8999999999999999999999999999998899999999984 34556667
Q ss_pred eEEEEeC
Q 045930 216 DLFLLSG 222 (661)
Q Consensus 216 ~v~lL~~ 222 (661)
+|.|-+.
T Consensus 1026 qi~V~k~ 1032 (1047)
T PRK10246 1026 QIKVKKI 1032 (1047)
T ss_pred eEEEEEC
Confidence 7777754
No 448
>PRK03918 chromosome segregation protein; Provisional
Probab=99.02 E-value=5.9e-10 Score=134.79 Aligned_cols=76 Identities=29% Similarity=0.323 Sum_probs=67.9
Q ss_pred ccccCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 144 WRGISGGEKKR------LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 144 ~~~LSgGerqR------vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|+.++..+.+||++||++ ++...||++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~~ 863 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADYV 863 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCeE
Confidence 46799999994 5556678899999999999999999999999999999887788999999996 477899999
Q ss_pred EEEe
Q 045930 218 FLLS 221 (661)
Q Consensus 218 ~lL~ 221 (661)
++|.
T Consensus 864 ~~l~ 867 (880)
T PRK03918 864 IRVS 867 (880)
T ss_pred EEEE
Confidence 9997
No 449
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.02 E-value=7.8e-10 Score=117.62 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=92.6
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-ccc-cCeEEEEecCCC-CCCCCCHHHHHHH
Q 045930 27 LTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RLD-YGGVAYVTQENI-MLGTLTVRETIAY 103 (661)
Q Consensus 27 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~~-~~~i~yv~Q~~~-l~~~lTV~E~l~~ 103 (661)
+++.+++|+.++|.||+|||||||+++|++.+++. .|.+.+..... ... ...+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCCCCcC----------
Confidence 45678899999999999999999999999998763 45556543211 110 111222111100 000
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 045930 104 SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183 (661)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~ 183 (661)
+++- .-.+..+|-.+|+++++|||.+ .
T Consensus 204 ------------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~ 230 (308)
T TIGR02788 204 ------------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------D 230 (308)
T ss_pred ------------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------H
Confidence 0111 1134456777999999999996 3
Q ss_pred HHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 184 FVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 184 ~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
++.+.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 231 e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 231 EAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 456667776643456799999974 66679999999998888777665443
No 450
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.01 E-value=7.1e-09 Score=123.70 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=64.4
Q ss_pred HhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH---------hhcCeEEEEeCCeEEEecC
Q 045930 161 ILTRPQLLFLDEPTSGL-DSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVF---------ALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 161 L~~~P~lllLDEPtsGL-D~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~---------~~~D~v~lL~~G~~v~~G~ 230 (661)
+..+|+++++|||+.+| |+..+..+.+.++++.+.|.+++++||+|. ++. +.||..++|.+|++...|.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 799999999999999888999999999985 443 6899999999998766553
Q ss_pred CCChhHHHHhcCC
Q 045930 231 AKSAPTFFAEAGF 243 (661)
Q Consensus 231 ~~~~~~~f~~~g~ 243 (661)
.++++..|+
T Consensus 728 ----~~~~~~~gl 736 (818)
T PRK13830 728 ----REFYERIGF 736 (818)
T ss_pred ----HHHHHHcCC
Confidence 344555553
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.98 E-value=3.8e-09 Score=99.91 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTS----------GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE 209 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPts----------GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~ 209 (661)
.+.++.++...+.+...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666677888889999999999999994 5555556666666656555699999999997543
No 452
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.96 E-value=3.9e-09 Score=108.15 Aligned_cols=136 Identities=33% Similarity=0.490 Sum_probs=90.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC-eecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG-KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN 112 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g-~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 112 (661)
|++..|+||+|+|||||.-.++--.. .|.-...+ ... .....+-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 67889999999999999887764322 23222221 111 1123466655432
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 045930 113 MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL----------------EILTRPQLLFLDEPTS- 175 (661)
Q Consensus 113 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~----------------aL~~~P~lllLDEPts- 175 (661)
+.++..+++..+...+++.+..++.. ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 23445566777777777665555443 2345555555443 335799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCc
Q 045930 176 -----GLDSAAAFFVVKILKNIAHD-GRTIISSIHQPS 207 (661)
Q Consensus 176 -----GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~ 207 (661)
.+|+.....+++.|++++++ |.+||++.|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999875 999999999863
No 453
>PRK15066 inner membrane transport permease; Provisional
Probab=98.94 E-value=5.6e-07 Score=93.20 Aligned_cols=240 Identities=15% Similarity=0.190 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHHHH----HHh-HHH
Q 045930 337 WKQLSILTQRSSLNMSRDFGY-YWLRIAIYIILSVCVGSIFYD-VGTNYTAIYARGSCAAFISGFMTFM----SIG-GFP 409 (661)
Q Consensus 337 ~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~~~~~l~~G~lf~~-~~~~~~~i~~r~~~~~f~~~~~~~~----s~~-~~~ 409 (661)
++-++.+.+|+.+...||+.. ...-+++.++..+++|.++-. .+.. .++ + -..|++.+...+. ++. +..
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~-~~~-~--y~~fl~pGll~~~~~~~~~~~~~~ 82 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEM-GGF-S--YMQFIVPGLIMMSVITNSYSNVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCC-CCC-c--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999854 333344555566666665532 1110 111 0 1122222222111 111 112
Q ss_pred HHHHHHHH-HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 410 SFIEEMRV-FSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMM 488 (661)
Q Consensus 410 ~~~~er~v-f~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~ 488 (661)
.+.+++.. ..++-..---+...+.+++++...-..++..++...+.+...|.++. ....+...+++...+....+++
T Consensus 83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 23333311 01111222347888999999987766565555554444444466543 2222222222222323345788
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHH
Q 045930 489 IASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGD 568 (661)
Q Consensus 489 i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~ 568 (661)
++.+.++..-...+.+.++.+++..||.+.+.+++|++ ++| +.++||+.|..|++=.. +.
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~-l~~-i~~~nPlt~~v~~~R~~-~~----------------- 220 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPF-WQG-VSKLNPIVYMVNAFRYG-FL----------------- 220 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHH-HHH-HHHHCcHHHHHHHHHHH-Hc-----------------
Confidence 88888888777778888888999999999999999984 677 99999999999977321 11
Q ss_pred HHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045930 569 VILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFREK 610 (661)
Q Consensus 569 ~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 610 (661)
|.+ +.+.|.++++++++.+++..++....|.+++
T Consensus 221 -------g~~-~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 221 -------GIS-DVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred -------CCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 111 1235778889999888888888776655544
No 454
>PRK01156 chromosome segregation protein; Provisional
Probab=98.94 E-value=5.2e-09 Score=126.81 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=66.1
Q ss_pred ccccCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hc-C-CEEEEEecCCchHHHhhc
Q 045930 144 WRGISGGEKKRLSI------ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HD-G-RTIISSIHQPSSEVFALF 214 (661)
Q Consensus 144 ~~~LSgGerqRvsI------a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la-~~-g-~tvi~s~Hq~~~~i~~~~ 214 (661)
+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .+||++||++ +....|
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHhc
Confidence 46799999999975 589999999999999999999999999999998654 33 3 4899999996 356899
Q ss_pred CeEEEEe
Q 045930 215 DDLFLLS 221 (661)
Q Consensus 215 D~v~lL~ 221 (661)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 455
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.93 E-value=4.1e-09 Score=115.71 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=107.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .|.|.+.|+. ..+|+|.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGer-------------------g~ev~e~ 200 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGER-------------------GREVKDF 200 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCC-------------------cccHHHH
Confidence 3577875 999999999999999999999999999988763 5655554432 1366666
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh-------hCCCEEEEeCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL-------TRPQLLFLDEP 173 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~-------~~P~lllLDEP 173 (661)
+.... ..-|+.+. ..+ ....+-|.|+|+|+..+.+.+ .++-++++|||
T Consensus 201 ~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 201 IRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecch
Confidence 54321 11122211 111 112468999999999998888 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 174 TSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|+..|+. .++-..+.+....|.+..+.+|.+ .+.+ |.-...+|.+...+.
T Consensus 256 Tr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~E---Rag~~~~GSiT~~~t 305 (432)
T PRK06793 256 TRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLE---RSGKTQKGSITGIYT 305 (432)
T ss_pred HHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHH---HhccCCCcceEEEEE
Confidence 9999996 445455556554588888888853 3444 444457888766654
No 456
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.93 E-value=1.3e-08 Score=103.84 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=99.5
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHc-CCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 23 LLNGL-TGYAEPARILAVMGPSGSGKSTLLDALAG-RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 23 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG-~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
-|+.+ .+=+++|.++.|.|++|||||||...++- ..+ .| ..+.|+..+. +..+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----~g-------------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-----QG-------------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-----CC-------------CEEEEEEcCC------CHHHH
Confidence 35554 55699999999999999999999988752 111 11 2355665532 33443
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT--RPQLLFLDEPTSG-- 176 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~--~P~lllLDEPtsG-- 176 (661)
+.-...+. ..-. +.+. -|.-...+..+.. ....|.++++.+....+++. +|+++++||||+.
T Consensus 69 ~~~~~~~g----~~~~-------~~~~-~g~l~i~~~~~~~--~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVK----IDIS-------DFFL-WGYLRIFPLNTEG--FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCC----CChh-------HHHh-CCCceEEeccccc--cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 33222221 1111 1100 0111111111110 12356788999999999998 9999999999965
Q ss_pred -CCHHHHHHHHHHHHHHHhcCCEEEEEecCCch------HHHhhcCeEEEEeC
Q 045930 177 -LDSAAAFFVVKILKNIAHDGRTIISSIHQPSS------EVFALFDDLFLLSG 222 (661)
Q Consensus 177 -LD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~------~i~~~~D~v~lL~~ 222 (661)
.|......+++.++.++++|.|+++++|++.. .+..++|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 44555555556677777789999999998642 14567787777763
No 457
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.90 E-value=2.8e-09 Score=133.37 Aligned_cols=69 Identities=26% Similarity=0.253 Sum_probs=61.4
Q ss_pred cccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCEEEEEecCCchHHHhh
Q 045930 145 RGISGGEKK------RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-----DGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 145 ~~LSgGerq------RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-----~g~tvi~s~Hq~~~~i~~~ 213 (661)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||++ ..+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHH
Confidence 369999999 99999999999999999999999999999999999988742 378999999996 466665
Q ss_pred c
Q 045930 214 F 214 (661)
Q Consensus 214 ~ 214 (661)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.81 E-value=2.1e-08 Score=99.92 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
.++++|..+|+++++|||. |..+.. .+.+.+..|..++.|+|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~----~~l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIR----LALTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHH----HHHHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778898999999999996 555433 33345667999999999974 456788887664
No 459
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.80 E-value=6.3e-09 Score=129.12 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=66.8
Q ss_pred cccccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE
Q 045930 143 HWRGISGGEKKRLSIALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 143 ~~~~LSgGerqRvsIa~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
.+..||||||+|++||++++ .+|+++||||||+|||+.+...+.+.|+.+++ +.+||++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 34579999999999999985 67799999999999999999999999999975 478999999974 457899998
Q ss_pred EEe
Q 045930 219 LLS 221 (661)
Q Consensus 219 lL~ 221 (661)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 764
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.79 E-value=1.9e-08 Score=112.00 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=95.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
.++++.+..+++|++++++||||+||||++..|++.+... .|. +.|+++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777778899999999999999999999999976321 221 2478888876 347899999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK-RLSIALEILTRP-----QLLFLDEPTS 175 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq-RvsIa~aL~~~P-----~lllLDEPts 175 (661)
.+.++... .+........+...+..+|.+..+.++.+ ...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDT-----aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDT-----IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCC-----CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98776531 11111122334444556777766666653 2222222 234455555555 6899999998
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 045930 176 GLDSAAAFFVVKILKNIAHDGRTIISSIH 204 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~g~tvi~s~H 204 (661)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344455555444544333333
No 461
>PRK02224 chromosome segregation protein; Provisional
Probab=98.71 E-value=2.9e-08 Score=120.11 Aligned_cols=77 Identities=31% Similarity=0.397 Sum_probs=66.6
Q ss_pred ccccCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEecCCchHH
Q 045930 144 WRGISGGEKK------RLSIALEILTR-----P-QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR-TIISSIHQPSSEV 210 (661)
Q Consensus 144 ~~~LSgGerq------RvsIa~aL~~~-----P-~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~-tvi~s~Hq~~~~i 210 (661)
+..||||||+ |++++++++.+ | +++|+||||++||+.....+.+.|+.++..|. +||++||++ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence 4589999999 89999998864 3 67999999999999999999999999987664 899999997 34
Q ss_pred HhhcCeEEEEeC
Q 045930 211 FALFDDLFLLSG 222 (661)
Q Consensus 211 ~~~~D~v~lL~~ 222 (661)
...+|+++.+..
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 567999999964
No 462
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.71 E-value=2.2e-08 Score=124.48 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=67.6
Q ss_pred ccccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 045930 144 WRGISGGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFL 219 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~l 219 (661)
+..||||||++++||++++. +|++++||||++|||+.....+.+.|+++++ +..+|++||++ .....||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeEe
Confidence 45899999999999999985 6899999999999999999999999999865 47899999996 46689999998
Q ss_pred Ee
Q 045930 220 LS 221 (661)
Q Consensus 220 L~ 221 (661)
+.
T Consensus 1149 ~~ 1150 (1164)
T TIGR02169 1149 VT 1150 (1164)
T ss_pred EE
Confidence 75
No 463
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.69 E-value=1.2e-08 Score=111.86 Aligned_cols=50 Identities=24% Similarity=0.404 Sum_probs=44.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee-EEEECCeec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG-NVLLNGKKR 75 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~i~~~g~~~ 75 (661)
+.+|++||+++++||+++|+|||||||||||+ +|+..+. +| +|.++|.+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEEC
Confidence 46899999999999999999999999999999 6776653 55 899999865
No 464
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=3.9e-08 Score=108.15 Aligned_cols=174 Identities=20% Similarity=0.213 Sum_probs=111.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----------cccCeEEEEecCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----------LDYGGVAYVTQEN 89 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----------~~~~~i~yv~Q~~ 89 (661)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..++++..-|.|-.+|.+.. ..+..+++++|++
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5699999 999999999999999999999999999998776444466655554321 1244699999999
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEE
Q 045930 90 IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLF 169 (661)
Q Consensus 90 ~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lll 169 (661)
..+..+++.|++.+.+......+ +.|--+++ .+...++.. |+ +++ .
T Consensus 222 s~~~rl~a~e~a~~iAEyfr~~g-------~~Vll~~D--sltr~a~A~------RE--------isl-----------~ 267 (434)
T PRK07196 222 SPLMRIKATELCHAIATYYRDKG-------HDVLLLVD--SLTRYAMAQ------RE--------IAL-----------S 267 (434)
T ss_pred ChhhhHHHHHHHHHHHHHhhhcc-------CCEEEeec--chhHHHhhh------hH--------HHH-----------h
Confidence 99999999999988776421100 00000000 011111110 11 111 1
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHh-c--C-CEEEEEecCCchHHH-hhcCeEEEEeCCeEEEec
Q 045930 170 LDEP--TSGLDSAAAFFVVKILKNIAH-D--G-RTIISSIHQPSSEVF-ALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 170 LDEP--tsGLD~~~~~~i~~~L~~la~-~--g-~tvi~s~Hq~~~~i~-~~~D~v~lL~~G~~v~~G 229 (661)
+.|| +.|-.+.-...+-+++.+..+ + | .|.+.+..-+.+++. -.+|.+.-+-||+++-+-
T Consensus 268 ~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr 334 (434)
T PRK07196 268 LGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSR 334 (434)
T ss_pred cCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcH
Confidence 2344 336666666667777777632 2 3 466777666555443 357888888899998653
No 465
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.61 E-value=1.1e-06 Score=79.80 Aligned_cols=118 Identities=28% Similarity=0.347 Sum_probs=76.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN 112 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 112 (661)
+++.+.|.||+|+||||+++.|+....... .+-+.++...... .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------EVLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------cCHHHHH------------
Confidence 467899999999999999999999876421 1233343322110 0000000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 045930 113 MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK----- 187 (661)
Q Consensus 113 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~----- 187 (661)
......+ .....+++..+..++.+--.+|+++++||+..-.+.........
T Consensus 51 -----------------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 -----------------LIIVGGK-------KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred -----------------hhhhhcc-------CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 0000000 12367778888888888877899999999999999998887665
Q ss_pred -HHHHHHhcCCEEEEEec
Q 045930 188 -ILKNIAHDGRTIISSIH 204 (661)
Q Consensus 188 -~L~~la~~g~tvi~s~H 204 (661)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22333345788999988
No 466
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.60 E-value=2.3e-08 Score=112.76 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=98.4
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCCceeeEEEECCeecc--c--ccCeEEEEecCCCCCCCC
Q 045930 23 LLNGL-TGYAEPARILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGKKRR--L--DYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 23 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~L--aG~~~~~~~~~G~i~~~g~~~~--~--~~~~i~yv~Q~~~l~~~l 95 (661)
-|+.+ .+=+.+|..+.|.||+|||||||..-. .|....+ +.-+.+...... . ..+..|+-.++..--..
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~- 84 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGK- 84 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCc-
Confidence 35664 567999999999999999999998766 3433311 222333222110 0 01122332221100000
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH--HHHhhCCCEEEEeCC
Q 045930 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA--LEILTRPQLLFLDEP 173 (661)
Q Consensus 96 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa--~aL~~~P~lllLDEP 173 (661)
+.+ + ..... .....+++.+++++..+.... .+|+|++|||.|+ .++..+|+..
T Consensus 85 -----l~~---~----~~~~~---~~~~~~~~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 85 -----LFI---L----DASPD---PEGQDVVGGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred -----eEE---E----ecCch---hccccccccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 000 0 00000 011123455666666666553 5999999999999 6666665443
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH-------H-HhhcCeEEEEe
Q 045930 174 TSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE-------V-FALFDDLFLLS 221 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~-------i-~~~~D~v~lL~ 221 (661)
...+..+.+.++.+++.|+|+|+++|++... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999999988899999999986421 2 55789999997
No 467
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.54 E-value=8.8e-07 Score=98.17 Aligned_cols=173 Identities=20% Similarity=0.232 Sum_probs=104.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-------------ccCeEEEEec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-------------DYGGVAYVTQ 87 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-------------~~~~i~yv~Q 87 (661)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..++. .|.+...|...+. ..+.+.++.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 4689999 999999999999999999999999999998764 4554444432110 0122333333
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCE
Q 045930 88 ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167 (661)
Q Consensus 88 ~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~l 167 (661)
.+. ++.+-. + ....--.+.+-+.+.|- |.++= ...++- -..-.|++.
T Consensus 227 ~d~-----~p~~r~------~------~~~~a~t~AE~frd~G~----~Vll~---~DslTr----~A~A~REis----- 273 (440)
T TIGR01026 227 SDQ-----SPLLRL------K------GAYVATAIAEYFRDQGK----DVLLL---MDSVTR----FAMAQREIG----- 273 (440)
T ss_pred CCC-----CHHHHH------H------HHHHHHHHHHHHHHCCC----CEEEE---EeChHH----HHHHHHHHH-----
Confidence 221 111110 0 00011112233333342 22110 011221 111111111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-------EEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 168 LFLDEP--TSGLDSAAAFFVVKILKNIAHDGR-------TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 168 llLDEP--tsGLD~~~~~~i~~~L~~la~~g~-------tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||.. ..++|++.-+.+|+++.+...++
T Consensus 274 l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 234775 559999999999999999887666 8888888853 35789999999999999887543
No 468
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.52 E-value=1.2e-06 Score=105.30 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=55.3
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh--hcCeEEEEeCCeEE
Q 045930 157 IALEILTRPQLLFLDEPTSGL-DSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFA--LFDDLFLLSGGETV 226 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGL-D~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~--~~D~v~lL~~G~~v 226 (661)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+|. ++.+ .++.++-..+.++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 677888999999999999999 799999999999999888999999999985 4543 34444444444444
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.52 E-value=4.5e-08 Score=99.44 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=27.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 045930 23 LLNGL-TGYAEPARILAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 23 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~La 55 (661)
-|+.+ .+=+++|++++|.||+|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 35553 5679999999999999999999988665
No 470
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=2e-07 Score=101.46 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=54.7
Q ss_pred ccCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 146 GISGGEKKRLSIALEILT---------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~---------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
.+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. |..|++|+|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999999764 779999999963
No 471
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.47 E-value=1.5e-07 Score=93.38 Aligned_cols=112 Identities=15% Similarity=0.279 Sum_probs=66.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHh-cCCCCCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAH-LRLPSNMN 114 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~~~~~~ 114 (661)
+++|.||||||||||.++|++.+.. |. +.++++|+.. ..++..+....... ...|....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~-----~~--------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN-----PK--------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC-----CC--------------eEEEEecccc-cccccccHHHhccCCCCCCCccc
Confidence 5799999999999999999998621 21 3344444322 22333333221111 11111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 115 NEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 115 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
.+...+.++.+...+..+..+ ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 61 ----~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 ----FDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ----HHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 223445666665544444433 2477777766554 5688999999999999876
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.46 E-value=9.4e-07 Score=95.51 Aligned_cols=56 Identities=13% Similarity=0.299 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
.++.+|-.+|+++++||+. |..++...++ .+..|.+|+.|+|-.+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3566788899999999997 8888765444 4567999999999864 44667777654
No 473
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.46 E-value=1.8e-05 Score=81.57 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=111.4
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Q 045930 417 VFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIA-SMVPN 495 (661)
Q Consensus 417 vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~-~~~p~ 495 (661)
.+.|=..+..-+ ..+++++.+...-...+...+...++.+..|... ...+..+...+.+......++|.+++ ....+
T Consensus 119 ~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 196 (286)
T COG0842 119 TLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPF-LGSLLLLLLLLLLLLLATVALGLLLSTFAKSQ 196 (286)
T ss_pred cHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333334444432 5667777666666665555555555556666322 23444444455555555667777555 36677
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHHHHHHhhh
Q 045930 496 YLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTML 575 (661)
Q Consensus 496 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~ 575 (661)
...+..++..+..++..++|.+.|.+.+|.+ .+| +.+++|..|+.+++-.....+
T Consensus 197 ~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~-~~~-i~~~~P~t~~~~~~~~~~~~~----------------------- 251 (286)
T COG0842 197 LQCASAVGNLLILPLGFLSGVFFPLELLPAW-LQG-ISYINPLTYAIDALRYVYLGG----------------------- 251 (286)
T ss_pred HHHHHHHHHHHHHHHHHHccccCchhhhHHH-HHH-HHHHccHHHHHHHHHHHHhCC-----------------------
Confidence 8888888888889999999999999999984 788 999999999999875432211
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045930 576 GMNLDRSKWWDLAVVVAILISYRVIFFAILKFREK 610 (661)
Q Consensus 576 ~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 610 (661)
.. ..+.|.++++++++.+++.+++...+|.+++
T Consensus 252 -~~-~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 252 -WR-NDGIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred -Cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 1126778889999999999998887776654
No 474
>PRK14079 recF recombination protein F; Provisional
Probab=98.46 E-value=3.5e-07 Score=98.99 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=61.6
Q ss_pred ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 045930 146 GISGGEKKRLSIALEIL---------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~---------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.... .++|.+++.| ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCce
Confidence 47999999999999999 8999999999999999999999998886532 3555555443 57899
Q ss_pred EEEEeCCeEE
Q 045930 217 LFLLSGGETV 226 (661)
Q Consensus 217 v~lL~~G~~v 226 (661)
++.+.+|++.
T Consensus 335 ~~~~~~~~~~ 344 (349)
T PRK14079 335 TLRIEAGVFT 344 (349)
T ss_pred EEEEeccEec
Confidence 9999998864
No 475
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.46 E-value=4.6e-07 Score=109.90 Aligned_cols=87 Identities=32% Similarity=0.357 Sum_probs=73.6
Q ss_pred cccccccCc--cccccCHHHHHHHHHHHHHhh------C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Q 045930 134 CADRLIGNW--HWRGISGGEKKRLSIALEILT------R--PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203 (661)
Q Consensus 134 ~~d~~vg~~--~~~~LSgGerqRvsIa~aL~~------~--P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~ 203 (661)
..+...|+. .+..|||||+-.++||.+|+. + -+.+||||||..||+.....++++|..+...|++|+++|
T Consensus 801 ~~~~~~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIIS 880 (908)
T COG0419 801 VVVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIIS 880 (908)
T ss_pred EEEEecCCCccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 334444443 457899999998888877653 5 699999999999999999999999999998899999999
Q ss_pred cCCchHHHhhcCeEEEEeC
Q 045930 204 HQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 204 Hq~~~~i~~~~D~v~lL~~ 222 (661)
|++ ++.+.+|.++.+..
T Consensus 881 H~e--el~e~~~~~i~V~k 897 (908)
T COG0419 881 HVE--ELKERADVRIRVKK 897 (908)
T ss_pred ChH--HHHHhCCeEEEEEe
Confidence 995 78899999999863
No 476
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.42 E-value=6.1e-07 Score=107.48 Aligned_cols=136 Identities=24% Similarity=0.291 Sum_probs=84.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
.|=+|+++. ..+.++.|.|||++||||+|+.++-.. -. ..| .|||-+..- +.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA---q~G----------------~~VPa~~a~---i~~--- 649 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA---QIG----------------SFVPAESAR---IGI--- 649 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH---hcC----------------CceeccceE---ecc---
Confidence 466777777 677899999999999999999987542 00 011 122222110 011
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEEeCC---CC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFLDEP---TS 175 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllLDEP---ts 175 (661)
+++++.++|- .|... +|.|-=+.....++..|- ++++++++||| |+
T Consensus 650 ---------------------~d~I~triga---~d~i~-----~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 650 ---------------------VDRIFTRIGA---SDDLA-----SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ---------------------cCeeeeccCc---ccccc-----cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 1111111221 11111 346665555555555544 48999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCe
Q 045930 176 GLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
.+|..+ ....+++.+.+. |.+++++||.. ++.+++|+
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 888443 345567777765 58999999993 67788775
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.41 E-value=6.5e-07 Score=88.25 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=60.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-cc-ccCeEEEEecCC--CCCCCCCHH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RL-DYGGVAYVTQEN--IMLGTLTVR 98 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~-~~~~i~yv~Q~~--~l~~~lTV~ 98 (661)
..+=+.+.+++|+.++|+||||||||||+++|+|.+++. .|.|.+.+... .. ....++++.|.+ ...+..|+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344456678999999999999999999999999998763 78888877532 11 234466666544 346678888
Q ss_pred HHHHHHHhc
Q 045930 99 ETIAYSAHL 107 (661)
Q Consensus 99 E~l~~~~~l 107 (661)
+.+....+.
T Consensus 91 ~~l~~~lR~ 99 (186)
T cd01130 91 DLLRSALRM 99 (186)
T ss_pred HHHHHHhcc
Confidence 888776553
No 478
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.26 E-value=2.1e-06 Score=94.79 Aligned_cols=170 Identities=22% Similarity=0.197 Sum_probs=98.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC---eecc---------cccCeEEEEecC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG---KKRR---------LDYGGVAYVTQE 88 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g---~~~~---------~~~~~i~yv~Q~ 88 (661)
..+++.++ .+.+||.++|+|||||||||||++|++..++. .|.|.+.| ++.. ..++.+++|+|.
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs 228 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVREFLEDTLADNLKKAVAVVATS 228 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC
Confidence 56888886 89999999999999999999999999998764 68887765 3211 123579999997
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH-HHHHH-HHHHHHHhhCCC
Q 045930 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG-GEKKR-LSIALEILTRPQ 166 (661)
Q Consensus 89 ~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg-GerqR-vsIa~aL~~~P~ 166 (661)
+.-.. .+-...+.+ -.+.+.+.+-|- |.++= ...++- -+-+| +++
T Consensus 229 d~~~~---~r~~~~~~a--------------~~iAEyfrd~G~----~Vll~---~DslTr~A~A~rEisl--------- 275 (450)
T PRK06002 229 DESPM---MRRLAPLTA--------------TAIAEYFRDRGE----NVLLI---VDSVTRFAHAAREVAL--------- 275 (450)
T ss_pred CCCHH---HHHHHHHHH--------------HHHHHHHHHcCC----CEEEe---ccchHHHHHHHHHHHH---------
Confidence 64110 111111111 001111211121 11110 011110 11111 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHh--c--C-CEEEEEecCCchHHHh-hcCeEEEEeCCeEEEec
Q 045930 167 LLFLDEP--TSGLDSAAAFFVVKILKNIAH--D--G-RTIISSIHQPSSEVFA-LFDDLFLLSGGETVYFG 229 (661)
Q Consensus 167 lllLDEP--tsGLD~~~~~~i~~~L~~la~--~--g-~tvi~s~Hq~~~~i~~-~~D~v~lL~~G~~v~~G 229 (661)
.++|| +.|-.+.--..+-+++.+..+ + | .|.+.+..-+.+++.+ .+|.+.-+-||+++-+-
T Consensus 276 --~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLsr 344 (450)
T PRK06002 276 --AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDR 344 (450)
T ss_pred --hcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEcH
Confidence 23454 336666666667777777664 2 3 4777777666555433 57777778889988653
No 479
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.26 E-value=2.9e-05 Score=93.20 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=43.5
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 160 EILTRPQLLFLDEPTSGLD-SAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD-~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||+|.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3556899999999999999 88899999999999888999999999984
No 480
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.23 E-value=2.7e-05 Score=81.12 Aligned_cols=155 Identities=20% Similarity=0.121 Sum_probs=84.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
-..|+++.+-+.+|+++.|.|++|+|||||+..++...... .| ..+.|+.-+. +..+.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g-------------~~vl~iS~E~------~~~~~ 74 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HG-------------VRVGTISLEE------PVVRT 74 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cC-------------ceEEEEEccc------CHHHH
Confidence 45789998899999999999999999999998887543210 01 1244443332 12222
Q ss_pred HHHHH----hcCCCCC-CCHHHHHHHHHHHHHHcC---CCccccccccCccccccCHHHHHHHHHHHHHhh--CCCEEEE
Q 045930 101 IAYSA----HLRLPSN-MNNEEITDVIEEAITEMG---LEDCADRLIGNWHWRGISGGEKKRLSIALEILT--RPQLLFL 170 (661)
Q Consensus 101 l~~~~----~l~~~~~-~~~~~~~~~v~~~l~~lg---L~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~--~P~lllL 170 (661)
..... ....... .......+.++++++.+. .-...|.. ...+ -.+-+..++.++. +|+++++
T Consensus 75 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~------~~~~--~~~i~~~i~~~~~~~~~~~vvI 146 (271)
T cd01122 75 ARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSF------GEYS--MDSVLEKVRYMAVSHGIQHIII 146 (271)
T ss_pred HHHHHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCC------CccC--HHHHHHHHHHHHhcCCceEEEE
Confidence 21111 1110000 000111223334443331 11111110 0111 2344455555553 7999999
Q ss_pred eCCCCCCCH-------H-HHHHHHHHHHHHHhc-CCEEEEEecC
Q 045930 171 DEPTSGLDS-------A-AAFFVVKILKNIAHD-GRTIISSIHQ 205 (661)
Q Consensus 171 DEPtsGLD~-------~-~~~~i~~~L~~la~~-g~tvi~s~Hq 205 (661)
|..+.-.+. . ....++..|++++++ |.||++++|-
T Consensus 147 D~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 147 DNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred CCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 998764432 1 234677778888775 8999999875
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.20 E-value=3.7e-06 Score=104.58 Aligned_cols=163 Identities=22% Similarity=0.299 Sum_probs=89.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHH
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSA 105 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 105 (661)
=+++..+++++++|+|++|+|||||++++++..... ..|.+.+++........ .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~--~~~~~~~~~-------~~~~~-- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSME--IYSSANPDD-------YNMKL-- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchh--hcccccccc-------cchhH--
Confidence 346677889999999999999999999998876542 47888876532111000 000000000 00000
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 045930 106 HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185 (661)
Q Consensus 106 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i 185 (661)
...++.+.++++..++. +. .+ ++.|+|+ ..++-+++||+- |... .
T Consensus 266 ----------~l~~~~l~~il~~~~~~------~~-----~~-~~~~~~L------~~krvLLVLDdv----~~~~---~ 310 (1153)
T PLN03210 266 ----------HLQRAFLSEILDKKDIK------IY-----HL-GAMEERL------KHRKVLIFIDDL----DDQD---V 310 (1153)
T ss_pred ----------HHHHHHHHHHhCCCCcc------cC-----CH-HHHHHHH------hCCeEEEEEeCC----CCHH---H
Confidence 01122344444444331 11 12 5666663 355667788984 4333 3
Q ss_pred HHHHHHHH---hcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEecCCCChhHHHHhcCC
Q 045930 186 VKILKNIA---HDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVYFGEAKSAPTFFAEAGF 243 (661)
Q Consensus 186 ~~~L~~la---~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~ 243 (661)
++.|.... ..|.+||+|||+. ..+... +|+++.+.. -+.+++.+.|...-+
T Consensus 311 l~~L~~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 311 LDALAGQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHhhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 44444432 3588999999995 333333 566654431 123467777776544
No 482
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.18 E-value=1.8e-05 Score=75.48 Aligned_cols=129 Identities=11% Similarity=-0.099 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 413 EEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGIS--HFIYAGLDLTSSIAVIESCMMMIA 490 (661)
Q Consensus 413 ~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~--~f~~f~l~l~~~~~~~~s~~~~i~ 490 (661)
.|+.++.|-+..-. +.+.|+++|.+...-..++..++...+.+. .|.+.... ..+.+++...+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777776666 799999999999998888888877777754 48876532 122222222333334445555555
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHH
Q 045930 491 SMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAY 546 (661)
Q Consensus 491 ~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~ 546 (661)
...++.+... ....++.++++.+|.+.|.+++|+| .+| +.+++|++|+.+++-
T Consensus 94 ~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~w-lq~-ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDW-AQP-LIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHH-HHH-HHhhCCccHHHHHHH
Confidence 5555544333 3466677888888999999999984 777 999999999999873
No 483
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.15 E-value=2.9e-06 Score=106.35 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=52.3
Q ss_pred ccccCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 045930 144 WRGISGGEKKRLS----IALE--------ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205 (661)
Q Consensus 144 ~~~LSgGerqRvs----Ia~a--------L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq 205 (661)
..+||||||||+. +|++ +..+|++++|||||+|||+.+...+++.+.++ |.++|+++|.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 3689999999996 5644 55899999999999999999999999999888 7889999887
No 484
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.15 E-value=1.3e-06 Score=85.33 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=42.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----ccCeEEEEecCCCCCCCCCHHHHHHH
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----DYGGVAYVTQENIMLGTLTVRETIAY 103 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~~~~i~yv~Q~~~l~~~lTV~E~l~~ 103 (661)
+||+++|+|+||||||||+++|+|++.+ +.++|.+... .+...++.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998764 3455544211 11124555665444455555555544
No 485
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.13 E-value=0.00057 Score=70.26 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 045930 341 SILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDV----GTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMR 416 (661)
Q Consensus 341 ~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~----~~~~~~i~~r~~~~~f~~~~~~~~s~~~~~~~~~er~ 416 (661)
+.+.||.++...|.|..+..-.+..++.|+.. ..|.+. ..+.++.. +.+.+......+ .+|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~---~~f~~~~~~~~~----~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLT---PFFSLAPWVFLF----LIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHH---HHHHHHHHHHHH----HHHHH--HHH
Confidence 56889999999999999887777777666442 222111 11111111 111111101111 12221 335
Q ss_pred HHHHHhcCCCC--------cHHHHHHHHHHHHHHHHHHHHh---hhhhhhccccccc---CCHHHHHHHHHHHHHHHHHH
Q 045930 417 VFSRERLNGHY--------GVAVYILSNFLSSLPFLTAMSF---ATTSITYYMVKFR---PGISHFIYAGLDLTSSIAVI 482 (661)
Q Consensus 417 vf~rE~~~g~Y--------~~~ay~la~~l~~lP~~~~~~~---if~~I~Y~m~gl~---~~~~~f~~f~l~l~~~~~~~ 482 (661)
.+.+||++|.. +.+.+.++|.++-+-+.++..+ ++....++ .|.+ .+.+.++...+..++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHHH
Confidence 56777777764 5688999999988655443332 12112211 1221 23444443334444444566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCC--cccccccccccccHHHHH
Q 045930 483 ESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDI--PKVFWRYPIAYINYGAWA 541 (661)
Q Consensus 483 ~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~w~w~i~yis~~~ya 541 (661)
.++|.++++++.|...|..++..+... ++.|+-. ..++ |++ ..| +.|+||..|-
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~-~~~-l~~~sp~~~~ 206 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGS-AYT-ISELGLSYHY 206 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhH-HHH-HHHcCHHHHH
Confidence 799999999999988886655433222 2222211 2233 542 455 9999997664
No 486
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.12 E-value=3e-06 Score=67.94 Aligned_cols=37 Identities=46% Similarity=0.687 Sum_probs=30.0
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 24 LNGLTGYAEP-ARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 24 L~~vs~~i~~-Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
.++.++.+.+ |++++|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456777776 569999999999999999999866543
No 487
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.02 E-value=1.3e-05 Score=69.65 Aligned_cols=47 Identities=38% Similarity=0.552 Sum_probs=36.5
Q ss_pred cccCHHHH-HHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 045930 145 RGISGGEK-KRLSIALEIL------T------RPQLLFLDEPTSGLDSAAAFFVVKILKN 191 (661)
Q Consensus 145 ~~LSgGer-qRvsIa~aL~------~------~P~lllLDEPtsGLD~~~~~~i~~~L~~ 191 (661)
.++||||| ..+.++.+++ . .|++++||||+++||......+++.|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 46999999 4444444332 2 3799999999999999999999999875
No 488
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.01 E-value=4e-05 Score=70.24 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCEEEEEecCCc
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-----DGRTIISSIHQPS 207 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-----~g~tvi~s~Hq~~ 207 (661)
++..........++.++++||.-.. +......+.+.+..... .+..+|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3445555666778999999998765 56666777888877753 4678888888653
No 489
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.01 E-value=0.0001 Score=88.60 Aligned_cols=47 Identities=28% Similarity=0.275 Sum_probs=42.3
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 161 ILTRPQLLFLDEPTSGLD-SAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD-~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
+-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.+++++||+|.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999888999999999974
No 490
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.99 E-value=1.3e-05 Score=75.73 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=32.7
Q ss_pred cccCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 045930 145 RGISGGEKKRLSIALEI-----LTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL-----~~~P~lllLDEPtsGLD~~~~~~i~~~L~~l 192 (661)
..++++++++.....+. ...|+++ |+|++|.....++++.|.++
T Consensus 121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 121 DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 34788888877666553 2345555 99999999999999888764
No 491
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.99 E-value=0.0001 Score=72.31 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCC-ccccccccCccccccCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 045930 121 VIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLS--IALEILT-RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195 (661)
Q Consensus 121 ~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvs--Ia~aL~~-~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~ 195 (661)
.+.+.++..++. -..-+++ ..+++||++++. +++.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~-----Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKA-----DKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECc-----ccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 345556665553 2222233 358999999977 4444433 2333 399999999999999999988764
No 492
>PRK08149 ATP synthase SpaL; Validated
Probab=97.96 E-value=1.2e-05 Score=88.64 Aligned_cols=177 Identities=17% Similarity=0.184 Sum_probs=100.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------cccCeEEEEecCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---------LDYGGVAYVTQENIM 91 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---------~~~~~i~yv~Q~~~l 91 (661)
.++++++ +.+.+||.++|+|+||+|||||+++|++...+++.+.|.|-.+|++.. ...+++++|.....-
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~ 217 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDF 217 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCC
Confidence 4699999 999999999999999999999999999998776555699999987632 123567777665332
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEe
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLD 171 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLD 171 (661)
.+.+ +....+.+ ..+.+.+.+.|- |.++= ...|+ |.+-|.--+. +.++
T Consensus 218 p~~~--r~~a~~~a--------------~tiAE~fr~~G~----~Vll~---~DslT-----r~A~A~rEi~----l~~g 265 (428)
T PRK08149 218 SSVD--RCNAALVA--------------TTVAEYFRDQGK----RVVLF---IDSMT-----RYARALRDVA----LAAG 265 (428)
T ss_pred CHHH--HHhHHHHH--------------HHHHHHHHHcCC----CEEEE---ccchH-----HHHHHHHHhH----hhcC
Confidence 2210 00111111 011122222231 11100 00011 0010000000 2345
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHh--cC-CEEEEEecCCchHHHh-hcCeEEEEeCCeEEEecC
Q 045930 172 EPTS--GLDSAAAFFVVKILKNIAH--DG-RTIISSIHQPSSEVFA-LFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 172 EPts--GLD~~~~~~i~~~L~~la~--~g-~tvi~s~Hq~~~~i~~-~~D~v~lL~~G~~v~~G~ 230 (661)
||-+ |-.+.--..+-+++.+..+ .| .|.+.+..-+.+++.+ .+|.+.-+-||+++.+-.
T Consensus 266 e~P~~~Gyp~~vfs~l~~l~ERag~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr~ 330 (428)
T PRK08149 266 ELPARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRK 330 (428)
T ss_pred CCCcccccCccHHHHHHHHHHhccCCCCCCceEEEEEEecCCCCCCCchhhhheeccEEEEEcHH
Confidence 6544 6666655566666666543 34 5777776655544433 578888888999987543
No 493
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.95 E-value=2.2e-05 Score=91.06 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=70.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----ceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH--HHHHHH
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNV-----VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE--TIAYSA 105 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-----~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E--~l~~~~ 105 (661)
..+.++|+||||+|||||+++|.+..+... ...+-+.+||..... ..++ +-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcC-
Confidence 356799999999999999999998764310 011224444432110 0111 11111
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 045930 106 HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185 (661)
Q Consensus 106 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i 185 (661)
.. .+...+...+.++.+|+.+..+..+. .+||| +||||| +..||...+..+
T Consensus 235 ------~~-~~~~~~~a~~~l~~~gl~~~~~g~v~-----~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 235 ------SV-HDPIYQGARRDLAETGVPEPKTGLVT-----DAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred ------Cc-cHHHHHHHHHHHHHcCCCchhcCchh-----hcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 01 11222345566788898877776653 58888 999999 899999999988
Q ss_pred HHHHHH
Q 045930 186 VKILKN 191 (661)
Q Consensus 186 ~~~L~~ 191 (661)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888865
No 494
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=0.00019 Score=80.25 Aligned_cols=103 Identities=9% Similarity=0.174 Sum_probs=70.2
Q ss_pred hCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhcCCEEEEEe-cCCchHHHhhcCeEE-EEeCCeEEEecCCCCh-----
Q 045930 163 TRPQLLFLDEPTSGLDSA-AAFFVVKILKNIAHDGRTIISSI-HQPSSEVFALFDDLF-LLSGGETVYFGEAKSA----- 234 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~-~~~~i~~~L~~la~~g~tvi~s~-Hq~~~~i~~~~D~v~-lL~~G~~v~~G~~~~~----- 234 (661)
.+|++|++|||...+|.. +...+...+..+.+.|+.+|+++ |+| .++..+.|++. -+..|-++...+++..
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p-~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP-QKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCH-HHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 379999999999988765 45678888988888788888877 555 56666667665 3567888888888742
Q ss_pred h-HHHHhcCCCCCCCCCchhHHHHhhccCchhHHH
Q 045930 235 P-TFFAEAGFPCPTRRNPSDHFLRCINSDFDVVTE 268 (661)
Q Consensus 235 ~-~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~ 268 (661)
+ ...+..|...|+ +..+|+.+.+..+.+.+..
T Consensus 272 L~~~~~~~~~~l~~--ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 272 ARKMLEIEHGELPE--EVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHhcCCCCCH--HHHHHHHhccccCHHHHHH
Confidence 1 233344555543 4566666666666554443
No 495
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.94 E-value=9.9e-06 Score=79.86 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch-HHHhhcCeEEEEeCC
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS-EVFALFDDLFLLSGG 223 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~-~i~~~~D~v~lL~~G 223 (661)
.|+-.|..||..+..+|+.+..+| +.+||.....+.+.+++..++|.+|++.+|.... ....+||.++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378899999999999999988887 8999999999999998887667899999998632 366789999887654
No 496
>PRK13764 ATPase; Provisional
Probab=97.93 E-value=7.1e-05 Score=85.76 Aligned_cols=63 Identities=25% Similarity=0.429 Sum_probs=49.5
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------------CCchHHHhhcCeEEEEeCCeE
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH---------------QPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~H---------------q~~~~i~~~~D~v~lL~~G~~ 225 (661)
|..+|+++++||.-..-| ++.+..++..|..++.|.| +. ..+...+|+++.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCEE
Confidence 678999999999985332 4444555556888999999 64 467789999999999999
Q ss_pred --EEecCC
Q 045930 226 --VYFGEA 231 (661)
Q Consensus 226 --v~~G~~ 231 (661)
+|++..
T Consensus 393 ~~v~~~~~ 400 (602)
T PRK13764 393 SKVYDLEF 400 (602)
T ss_pred EEEEeeee
Confidence 787763
No 497
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.92 E-value=5.9e-05 Score=77.25 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-cCCEEEEEecCCchHHHhhcC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV-KILKNIAH-DGRTIISSIHQPSSEVFALFD 215 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~-~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D 215 (661)
|-+|++=...-+++.+++++||+-.|=++.....+. ..++.+.+ .+..++++||.. ++.++.+
T Consensus 109 E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~--~l~~~~~ 173 (235)
T PF00488_consen 109 EMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH--ELAELLE 173 (235)
T ss_dssp HHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G--GGGGHHH
T ss_pred hHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc--hhHHHhh
Confidence 333443333344567899999999999999988875 45677777 488999999995 4544433
No 498
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.91 E-value=2.4e-05 Score=87.55 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=44.2
Q ss_pred hCCCEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHh-cCCEEEEEecCCch-------HHHhhcCeEEEEeCCe
Q 045930 163 TRPQLLFLDEPTSG----LD-----SAAAFFVVKILKNIAH-DGRTIISSIHQPSS-------EVFALFDDLFLLSGGE 224 (661)
Q Consensus 163 ~~P~lllLDEPtsG----LD-----~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~-------~i~~~~D~v~lL~~G~ 224 (661)
.+|+++++|.-++= ++ .....+++..|.++++ .|.|++++.|...+ .+..++|.|+.|++++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47999999987642 11 2334566677888776 49999999997432 2567899999998654
No 499
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.89 E-value=2e-05 Score=85.57 Aligned_cols=75 Identities=23% Similarity=0.165 Sum_probs=46.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc----cCeEEEEecCCCCCCCCCHHHHHHHHHh
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD----YGGVAYVTQENIMLGTLTVRETIAYSAH 106 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 106 (661)
++|.+++|.||+||||||+|++|++.+.......+.|.....+.... ....+.+.|...--...+..+.+.-+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48899999999999999999999998642111123554444443221 2235777886432222355566554443
No 500
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.89 E-value=2.8e-05 Score=86.09 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=70.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC---eecc------c--ccCeEEEE----
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG---KKRR------L--DYGGVAYV---- 85 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g---~~~~------~--~~~~i~yv---- 85 (661)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.|.+.| +... . .....+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 4688998 999999999999999999999999999987431 236666655 2211 0 11234445
Q ss_pred -ecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC
Q 045930 86 -TQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE 132 (661)
Q Consensus 86 -~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 132 (661)
+|++ .+.+.+ +..++.-..+.+........+...++.+++++++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 7875 244444 555554444333111123356677888999999984
Done!