Query 045930
Match_columns 661
No_of_seqs 464 out of 2828
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 3E-48 1E-52 394.5 29.0 219 3-233 2-231 (235)
2 3tui_C Methionine import ATP-b 100.0 3E-48 1E-52 415.5 28.4 219 2-234 24-251 (366)
3 3gfo_A Cobalt import ATP-bindi 100.0 3.6E-48 1.2E-52 402.3 26.2 217 2-235 7-232 (275)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 4.5E-48 1.5E-52 413.9 26.5 215 2-234 4-226 (359)
5 3rlf_A Maltose/maltodextrin im 100.0 9.6E-48 3.3E-52 414.0 28.9 215 2-234 3-221 (381)
6 2olj_A Amino acid ABC transpor 100.0 9.4E-48 3.2E-52 396.8 27.0 214 2-233 24-245 (263)
7 2pcj_A ABC transporter, lipopr 100.0 2E-47 7E-52 385.6 28.6 211 2-231 4-223 (224)
8 1b0u_A Histidine permease; ABC 100.0 1E-47 3.5E-52 396.7 26.7 214 2-233 6-239 (262)
9 1vpl_A ABC transporter, ATP-bi 100.0 3E-47 1E-51 391.6 27.1 215 2-234 15-233 (256)
10 1g6h_A High-affinity branched- 100.0 2.4E-47 8.4E-52 392.9 24.3 217 2-233 7-239 (257)
11 1z47_A CYSA, putative ABC-tran 100.0 6.4E-47 2.2E-51 405.0 27.9 216 2-234 14-233 (355)
12 1ji0_A ABC transporter; ATP bi 100.0 6.1E-47 2.1E-51 386.1 24.2 213 2-233 6-225 (240)
13 1g29_1 MALK, maltose transport 100.0 2.1E-46 7.2E-51 404.2 29.7 215 2-234 3-227 (372)
14 2it1_A 362AA long hypothetical 100.0 1.3E-46 4.3E-51 404.0 27.8 215 2-234 3-221 (362)
15 2yyz_A Sugar ABC transporter, 100.0 1E-46 3.5E-51 404.3 26.6 215 2-234 3-221 (359)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-46 3.9E-51 403.9 26.2 215 2-234 3-228 (353)
17 4g1u_C Hemin import ATP-bindin 100.0 1.6E-46 5.5E-51 388.4 25.2 213 2-234 11-235 (266)
18 1v43_A Sugar-binding transport 100.0 2.1E-46 7.1E-51 403.7 25.5 215 2-234 11-229 (372)
19 2onk_A Molybdate/tungstate ABC 100.0 5E-46 1.7E-50 379.1 23.3 209 3-234 2-214 (240)
20 2yz2_A Putative ABC transporte 100.0 7.1E-46 2.4E-50 383.8 24.0 220 1-234 1-225 (266)
21 3d31_A Sulfate/molybdate ABC t 100.0 7.7E-46 2.6E-50 396.2 24.2 210 3-234 2-215 (348)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 1.3E-45 4.5E-50 378.5 23.2 216 2-232 3-229 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-45 3.8E-50 384.6 20.1 217 2-233 21-249 (279)
24 2nq2_C Hypothetical ABC transp 100.0 1.3E-44 4.4E-49 371.6 26.1 209 2-233 4-214 (253)
25 2zu0_C Probable ATP-dependent 100.0 1.9E-44 6.6E-49 373.2 26.5 220 2-235 20-253 (267)
26 2qi9_C Vitamin B12 import ATP- 100.0 1.8E-44 6.1E-49 369.5 22.6 203 3-233 5-219 (249)
27 2ff7_A Alpha-hemolysin translo 100.0 4.3E-44 1.5E-48 366.5 22.8 212 2-233 7-229 (247)
28 2ixe_A Antigen peptide transpo 100.0 1.5E-44 5E-49 374.8 19.2 215 2-234 16-243 (271)
29 3nh6_A ATP-binding cassette SU 100.0 6.1E-44 2.1E-48 375.4 23.4 212 2-235 53-276 (306)
30 1sgw_A Putative ABC transporte 100.0 2.8E-44 9.4E-49 359.9 17.1 198 2-221 10-207 (214)
31 1mv5_A LMRA, multidrug resista 100.0 3.3E-44 1.1E-48 366.5 17.8 212 3-234 2-224 (243)
32 2pjz_A Hypothetical protein ST 100.0 4.2E-43 1.4E-47 362.1 21.6 207 3-234 2-213 (263)
33 2ghi_A Transport protein; mult 100.0 9.8E-43 3.3E-47 359.1 22.9 212 2-234 17-240 (260)
34 2pze_A Cystic fibrosis transme 100.0 3E-42 1E-46 349.0 20.5 202 2-233 6-215 (229)
35 2cbz_A Multidrug resistance-as 100.0 7.1E-42 2.4E-46 348.0 19.8 205 2-233 3-214 (237)
36 3gd7_A Fusion complex of cysti 100.0 3.5E-42 1.2E-46 373.0 16.8 211 2-234 19-240 (390)
37 2yl4_A ATP-binding cassette SU 100.0 1.7E-40 5.7E-45 380.6 26.3 216 3-235 342-569 (595)
38 3b5x_A Lipid A export ATP-bind 100.0 1.9E-40 6.5E-45 379.2 23.6 213 2-234 341-565 (582)
39 3b60_A Lipid A export ATP-bind 100.0 1.9E-40 6.5E-45 379.2 23.4 213 2-234 341-565 (582)
40 4a82_A Cystic fibrosis transme 100.0 1.5E-40 5E-45 379.7 19.9 213 2-235 339-563 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 9.7E-41 3.3E-45 381.6 16.2 213 2-235 341-565 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 3.6E-40 1.2E-44 377.8 16.7 212 2-235 354-577 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.2E-39 4.2E-44 340.7 17.4 197 3-234 41-245 (290)
44 4f4c_A Multidrug resistance pr 100.0 7.7E-39 2.6E-43 395.0 17.4 217 2-236 1076-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 2.3E-37 7.9E-42 381.9 20.9 214 2-235 415-640 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 2E-36 7E-41 372.6 24.0 214 2-235 387-612 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 8.9E-37 3E-41 375.8 20.6 216 2-235 1030-1257(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 3.9E-36 1.3E-40 343.4 22.6 203 3-236 358-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.8E-36 1.3E-40 339.8 20.8 203 3-236 288-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.6E-35 5.4E-40 334.1 21.8 204 3-235 270-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2.3E-34 8E-39 328.2 21.0 192 21-236 360-559 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-34 7E-39 334.5 15.0 207 20-234 30-296 (670)
53 3bk7_A ABC transporter ATP-bin 100.0 1.4E-34 4.7E-39 330.6 11.7 192 6-224 95-305 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.5E-34 5.1E-39 326.8 11.8 191 7-224 26-235 (538)
55 2iw3_A Elongation factor 3A; a 100.0 2.5E-33 8.5E-38 331.1 22.3 195 3-234 436-633 (986)
56 2iw3_A Elongation factor 3A; a 100.0 2.8E-33 9.5E-38 330.7 16.6 207 2-230 671-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.3E-32 4.3E-37 319.5 17.3 198 21-234 335-638 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 1.9E-31 6.6E-36 304.2 12.3 188 21-228 91-302 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 2.6E-31 8.9E-36 299.8 11.7 182 23-227 15-217 (538)
60 3pih_A Uvrabc system protein A 100.0 2.9E-29 9.9E-34 296.2 21.7 199 21-235 597-901 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 9.8E-30 3.3E-34 298.3 16.5 197 22-234 638-940 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.6E-29 5.5E-34 296.1 18.0 195 23-233 512-824 (842)
63 2ygr_A Uvrabc system protein A 100.0 4.3E-29 1.5E-33 293.9 15.5 197 22-234 656-958 (993)
64 4aby_A DNA repair protein RECN 100.0 7.5E-28 2.6E-32 263.4 19.6 204 21-229 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.3E-30 4.6E-35 288.5 -9.2 186 24-234 128-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.9E-25 1.3E-29 238.5 18.3 82 144-227 277-364 (365)
67 1e69_A Chromosome segregation 99.9 1.7E-24 5.9E-29 229.5 14.0 86 145-233 218-310 (322)
68 3b85_A Phosphate starvation-in 99.9 5.6E-28 1.9E-32 240.7 -12.8 141 20-207 12-159 (208)
69 4gp7_A Metallophosphoesterase; 99.9 3.8E-25 1.3E-29 213.2 3.8 146 26-211 1-163 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 1.3E-26 4.3E-31 252.7 -9.3 171 21-218 36-248 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 1.3E-23 4.5E-28 204.1 8.1 147 36-227 2-159 (178)
72 1znw_A Guanylate kinase, GMP k 99.9 1.2E-26 4.2E-31 230.3 -16.7 180 20-221 8-202 (207)
73 2v9p_A Replication protein E1; 99.9 1.1E-25 3.7E-30 236.1 -17.6 157 21-240 113-270 (305)
74 3b9q_A Chloroplast SRP recepto 99.9 2.4E-23 8.3E-28 218.7 -0.2 172 24-225 90-284 (302)
75 3sop_A Neuronal-specific septi 99.8 2.8E-23 9.7E-28 214.9 -6.3 145 36-206 4-150 (270)
76 3qkt_A DNA double-strand break 99.8 7.2E-20 2.5E-24 195.4 19.8 79 144-224 246-332 (339)
77 2og2_A Putative signal recogni 99.8 2.2E-22 7.4E-27 215.7 -0.5 171 25-225 148-341 (359)
78 2o5v_A DNA replication and rep 99.8 3.7E-20 1.3E-24 198.6 15.3 83 144-234 262-354 (359)
79 2dpy_A FLII, flagellum-specifi 99.8 2.9E-24 1E-28 236.5 -17.1 173 21-232 145-340 (438)
80 2pt7_A CAG-ALFA; ATPase, prote 99.8 8.8E-22 3E-26 209.4 0.6 129 23-224 160-291 (330)
81 1cr0_A DNA primase/helicase; R 99.8 4.1E-21 1.4E-25 200.6 2.2 183 21-225 22-237 (296)
82 1z6g_A Guanylate kinase; struc 99.8 6.2E-24 2.1E-28 212.9 -18.5 173 22-218 11-205 (218)
83 3pih_A Uvrabc system protein A 99.8 3.6E-20 1.2E-24 218.9 9.3 158 52-234 386-558 (916)
84 3aez_A Pantothenate kinase; tr 99.8 2.7E-22 9.1E-27 211.7 -8.4 123 31-179 87-209 (312)
85 2r6f_A Excinuclease ABC subuni 99.8 4.7E-19 1.6E-23 208.2 15.7 135 93-235 450-599 (972)
86 4ad8_A DNA repair protein RECN 99.8 1.7E-19 6E-24 203.0 11.4 77 144-223 394-473 (517)
87 1tf7_A KAIC; homohexamer, hexa 99.8 1.1E-19 3.9E-24 204.9 9.8 156 28-224 275-444 (525)
88 2jeo_A Uridine-cytidine kinase 99.8 5.1E-21 1.7E-25 194.8 -2.6 169 20-224 11-180 (245)
89 2o8b_B DNA mismatch repair pro 99.8 3E-20 1E-24 222.9 2.7 170 3-231 751-937 (1022)
90 1tf7_A KAIC; homohexamer, hexa 99.8 1.1E-21 3.9E-26 221.3 -11.0 168 20-224 24-211 (525)
91 3thx_A DNA mismatch repair pro 99.8 5.9E-19 2E-23 209.3 11.5 161 20-235 648-812 (934)
92 2ygr_A Uvrabc system protein A 99.8 9.1E-19 3.1E-23 206.5 11.6 135 92-234 466-615 (993)
93 2obl_A ESCN; ATPase, hydrolase 99.7 1.2E-20 4.3E-25 201.6 -6.0 176 20-233 58-252 (347)
94 2ehv_A Hypothetical protein PH 99.7 1.7E-19 5.7E-24 182.4 1.9 167 23-221 18-206 (251)
95 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 6.5E-18 2.2E-22 158.9 12.2 80 144-225 55-142 (148)
96 2eyu_A Twitching motility prot 99.7 6.6E-19 2.3E-23 181.2 3.4 133 22-222 15-147 (261)
97 4a74_A DNA repair and recombin 99.7 3E-19 1E-23 178.2 0.4 154 29-224 20-201 (231)
98 3asz_A Uridine kinase; cytidin 99.7 1.3E-20 4.4E-25 186.6 -11.5 145 31-206 3-161 (211)
99 3thx_B DNA mismatch repair pro 99.7 8.6E-18 2.9E-22 198.9 10.0 145 20-217 659-805 (918)
100 2vf7_A UVRA2, excinuclease ABC 99.7 2.4E-17 8.2E-22 193.3 12.8 111 117-235 355-474 (842)
101 1ewq_A DNA mismatch repair pro 99.7 3.9E-18 1.3E-22 198.9 4.3 147 20-230 565-718 (765)
102 1wb9_A DNA mismatch repair pro 99.7 6.1E-18 2.1E-22 198.3 2.8 158 20-231 594-753 (800)
103 2qnr_A Septin-2, protein NEDD5 99.7 5.1E-19 1.8E-23 185.8 -7.4 153 21-207 11-168 (301)
104 1pzn_A RAD51, DNA repair and r 99.7 2.2E-18 7.4E-23 184.7 -2.8 166 23-230 119-309 (349)
105 1rj9_A FTSY, signal recognitio 99.7 5.2E-18 1.8E-22 178.2 -0.8 146 33-206 101-258 (304)
106 1nlf_A Regulatory protein REPA 99.7 1.1E-16 3.6E-21 165.9 8.7 150 30-206 26-181 (279)
107 3szr_A Interferon-induced GTP- 99.6 2.3E-18 7.8E-23 197.3 -5.6 170 29-238 43-239 (608)
108 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.1E-17 7.1E-22 164.7 1.7 169 21-223 9-192 (235)
109 3jvv_A Twitching mobility prot 99.6 1.6E-16 5.6E-21 170.3 3.6 127 30-223 119-246 (356)
110 2i3b_A HCR-ntpase, human cance 99.6 6E-18 2.1E-22 165.7 -7.0 155 34-229 1-169 (189)
111 1pui_A ENGB, probable GTP-bind 99.6 2.1E-17 7.3E-22 162.5 -5.7 176 3-198 4-202 (210)
112 2qag_C Septin-7; cell cycle, c 99.6 8.5E-17 2.9E-21 175.7 -4.0 162 3-206 12-177 (418)
113 2cvh_A DNA repair and recombin 99.6 3.3E-15 1.1E-19 147.8 7.5 154 22-223 7-185 (220)
114 2bdt_A BH3686; alpha-beta prot 99.5 1E-18 3.5E-23 170.0 -19.0 168 34-233 2-181 (189)
115 1s96_A Guanylate kinase, GMP k 99.5 1.9E-16 6.5E-21 158.6 -4.6 148 28-238 10-162 (219)
116 3kta_B Chromosome segregation 99.5 3.9E-14 1.3E-18 136.5 11.2 78 144-224 62-145 (173)
117 1zp6_A Hypothetical protein AT 99.5 6.5E-17 2.2E-21 157.0 -10.0 150 30-204 5-159 (191)
118 2qag_B Septin-6, protein NEDD5 99.5 5E-15 1.7E-19 161.4 0.7 169 21-205 28-218 (427)
119 1lw7_A Transcriptional regulat 99.5 5.3E-17 1.8E-21 174.8 -15.8 176 23-232 157-351 (365)
120 2bbw_A Adenylate kinase 4, AK4 99.5 9.8E-17 3.4E-21 163.0 -13.2 147 33-196 26-200 (246)
121 2ewv_A Twitching motility prot 99.5 9.9E-15 3.4E-19 157.5 1.6 130 23-221 127-257 (372)
122 2gza_A Type IV secretion syste 99.4 2.8E-14 9.6E-19 153.4 4.2 135 24-224 165-303 (361)
123 2rcn_A Probable GTPase ENGC; Y 99.4 5E-14 1.7E-18 150.5 5.9 139 23-194 205-346 (358)
124 1n0w_A DNA repair protein RAD5 99.4 9.4E-14 3.2E-18 139.4 5.8 158 24-223 13-209 (243)
125 1nij_A Hypothetical protein YJ 99.4 4.5E-17 1.5E-21 172.2 -19.9 163 34-215 4-197 (318)
126 3auy_A DNA double-strand break 99.4 8.1E-13 2.8E-17 142.5 12.0 75 144-221 278-359 (371)
127 1udx_A The GTP-binding protein 99.4 2.1E-14 7.2E-19 156.7 -2.7 169 24-218 147-320 (416)
128 1htw_A HI0065; nucleotide-bind 99.4 1.5E-14 5.1E-19 137.5 -3.7 78 21-103 20-97 (158)
129 2kjq_A DNAA-related protein; s 99.4 2.5E-13 8.4E-18 127.7 4.2 99 22-209 29-128 (149)
130 3ec2_A DNA replication protein 99.4 2.5E-13 8.6E-18 130.8 4.4 49 161-209 97-146 (180)
131 2yhs_A FTSY, cell division pro 99.4 2.4E-14 8.2E-19 158.0 -3.7 152 24-205 283-448 (503)
132 2f1r_A Molybdopterin-guanine d 99.3 3.4E-15 1.2E-19 143.8 -9.6 137 35-196 3-163 (171)
133 3e70_C DPA, signal recognition 99.3 1.2E-13 4.1E-18 146.4 0.0 141 32-206 127-279 (328)
134 2qm8_A GTPase/ATPase; G protei 99.3 5.9E-15 2E-19 157.2 -10.8 160 21-194 42-260 (337)
135 1odf_A YGR205W, hypothetical 3 99.3 8.4E-14 2.9E-18 145.2 -2.7 128 32-181 29-169 (290)
136 1w1w_A Structural maintenance 99.3 3.4E-12 1.2E-16 140.2 9.8 75 145-221 332-410 (430)
137 2yv5_A YJEQ protein; hydrolase 99.3 1.6E-13 5.4E-18 144.0 -1.7 120 31-160 162-301 (302)
138 1sxj_E Activator 1 40 kDa subu 99.2 7.3E-12 2.5E-16 133.1 7.1 152 37-232 39-194 (354)
139 2oap_1 GSPE-2, type II secreti 99.2 2.7E-14 9.2E-19 160.0 -12.6 175 21-214 247-457 (511)
140 3lda_A DNA repair protein RAD5 99.2 6.1E-11 2.1E-15 128.8 12.5 72 153-224 260-364 (400)
141 1p9r_A General secretion pathw 99.2 4.3E-14 1.5E-18 154.4 -13.0 133 22-169 157-314 (418)
142 3c8u_A Fructokinase; YP_612366 99.2 1.5E-13 5E-18 136.0 -8.9 149 31-216 19-168 (208)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 3.2E-14 1.1E-18 153.9 -14.9 170 30-233 16-210 (392)
144 1in4_A RUVB, holliday junction 99.1 5.6E-13 1.9E-17 141.6 -9.0 166 21-216 31-211 (334)
145 1u0l_A Probable GTPase ENGC; p 99.1 7.1E-12 2.4E-16 131.3 -1.7 101 30-140 165-290 (301)
146 1t9h_A YLOQ, probable GTPase E 99.1 2E-11 6.7E-16 128.0 0.4 117 29-154 168-303 (307)
147 1lvg_A Guanylate kinase, GMP k 99.0 4.5E-14 1.5E-18 138.9 -20.5 57 157-222 116-173 (198)
148 2dr3_A UPF0273 protein PH0284; 99.0 1.9E-09 6.6E-14 107.9 11.6 60 163-222 127-196 (247)
149 2x8a_A Nuclear valosin-contain 99.0 2E-13 6.8E-18 141.2 -19.0 126 21-175 33-164 (274)
150 2r6a_A DNAB helicase, replicat 99.0 1.5E-09 5.2E-14 119.9 10.7 173 22-225 191-401 (454)
151 1sq5_A Pantothenate kinase; P- 99.0 7.4E-12 2.5E-16 131.6 -7.7 83 22-108 49-156 (308)
152 1vma_A Cell division protein F 98.9 8.5E-10 2.9E-14 115.7 4.2 114 27-194 97-213 (306)
153 3tr0_A Guanylate kinase, GMP k 98.8 5.4E-11 1.9E-15 116.2 -5.6 67 28-101 1-72 (205)
154 1ls1_A Signal recognition part 98.8 5.1E-09 1.7E-13 109.2 8.7 118 25-192 91-209 (295)
155 2ius_A DNA translocase FTSK; n 98.8 1.2E-10 4.2E-15 129.7 -3.9 175 26-219 159-361 (512)
156 2px0_A Flagellar biosynthesis 98.8 4.9E-09 1.7E-13 109.4 7.6 141 32-228 103-247 (296)
157 2zr9_A Protein RECA, recombina 98.8 4.9E-09 1.7E-13 111.9 7.4 148 29-230 56-237 (349)
158 3k1j_A LON protease, ATP-depen 98.8 1.1E-10 3.6E-15 133.8 -6.5 159 21-191 47-227 (604)
159 3euj_A Chromosome partition pr 98.7 3.5E-09 1.2E-13 117.2 3.7 51 21-75 17-67 (483)
160 1iy2_A ATP-dependent metallopr 98.7 7.4E-12 2.5E-16 129.2 -17.3 122 21-167 62-190 (278)
161 1ixz_A ATP-dependent metallopr 98.7 1.1E-11 3.8E-16 125.9 -17.2 122 21-167 38-166 (254)
162 1oix_A RAS-related protein RAB 98.6 2.5E-08 8.7E-13 96.5 6.5 39 152-192 151-189 (191)
163 3lnc_A Guanylate kinase, GMP k 98.5 4.4E-08 1.5E-12 97.9 2.4 40 21-60 14-54 (231)
164 1svm_A Large T antigen; AAA+ f 98.4 2.8E-10 9.6E-15 122.6 -15.3 144 21-175 156-312 (377)
165 2ce7_A Cell division protein F 98.4 1.9E-07 6.5E-12 103.5 6.9 59 149-207 93-165 (476)
166 2qtf_A Protein HFLX, GTP-bindi 98.4 2.6E-08 8.8E-13 107.0 -0.3 152 33-194 177-353 (364)
167 3hr8_A Protein RECA; alpha and 98.4 1.5E-07 5E-12 100.5 4.3 37 23-59 48-86 (356)
168 3bh0_A DNAB-like replicative h 98.4 1.1E-06 3.7E-11 92.3 10.7 36 22-57 56-91 (315)
169 2xau_A PRE-mRNA-splicing facto 98.4 4.1E-07 1.4E-11 106.8 8.2 76 144-220 188-265 (773)
170 4a1f_A DNAB helicase, replicat 98.3 3.9E-07 1.3E-11 96.6 6.6 129 22-204 34-164 (338)
171 2f9l_A RAB11B, member RAS onco 98.3 3E-07 1E-11 89.1 4.9 37 155-193 130-166 (199)
172 4eun_A Thermoresistant glucoki 98.3 1.7E-08 5.7E-13 98.7 -4.3 46 23-75 18-63 (200)
173 1qhl_A Protein (cell division 98.3 1.7E-08 5.8E-13 101.2 -4.4 57 28-88 22-91 (227)
174 2e87_A Hypothetical protein PH 98.3 1E-06 3.5E-11 94.1 7.5 59 146-206 231-292 (357)
175 3nwj_A ATSK2; P loop, shikimat 98.2 1.4E-07 4.6E-12 96.1 -1.7 52 2-58 17-72 (250)
176 2z4s_A Chromosomal replication 98.2 1.3E-06 4.6E-11 95.9 5.9 103 163-267 193-303 (440)
177 1fnn_A CDC6P, cell division co 98.1 9E-06 3.1E-10 86.6 9.9 43 163-206 124-169 (389)
178 3vaa_A Shikimate kinase, SK; s 98.0 1.8E-06 6.1E-11 84.1 3.4 40 19-58 10-49 (199)
179 2dhr_A FTSH; AAA+ protein, hex 98.0 1.9E-08 6.5E-13 112.1 -12.3 126 22-174 54-186 (499)
180 3kta_A Chromosome segregation 98.0 2E-06 6.9E-11 82.1 3.4 35 25-60 18-52 (182)
181 1zu4_A FTSY; GTPase, signal re 98.0 7.7E-07 2.6E-11 93.8 0.5 76 24-102 95-185 (320)
182 2j41_A Guanylate kinase; GMP, 98.0 3.1E-06 1.1E-10 82.1 3.9 31 30-60 2-32 (207)
183 1v5w_A DMC1, meiotic recombina 98.0 5.8E-05 2E-09 80.1 13.8 139 29-206 117-274 (343)
184 3t34_A Dynamin-related protein 98.0 2.2E-05 7.4E-10 83.8 10.3 57 147-204 155-212 (360)
185 1ega_A Protein (GTP-binding pr 97.9 6.8E-06 2.3E-10 85.6 6.0 152 34-218 8-170 (301)
186 3uie_A Adenylyl-sulfate kinase 97.9 4E-07 1.4E-11 88.8 -3.5 50 21-74 12-63 (200)
187 3a00_A Guanylate kinase, GMP k 97.9 2.4E-06 8.4E-11 82.3 2.0 27 34-60 1-27 (186)
188 4e22_A Cytidylate kinase; P-lo 97.9 7.5E-07 2.6E-11 90.4 -1.9 62 22-89 18-96 (252)
189 3b9p_A CG5977-PA, isoform A; A 97.9 4.9E-05 1.7E-09 78.2 11.7 71 148-218 97-184 (297)
190 3tqc_A Pantothenate kinase; bi 97.9 1.3E-07 4.5E-12 99.6 -7.9 39 21-59 73-117 (321)
191 1jjv_A Dephospho-COA kinase; P 97.9 1.2E-06 4.1E-11 85.5 -0.6 70 148-221 61-131 (206)
192 1kgd_A CASK, peripheral plasma 97.9 4.3E-06 1.5E-10 80.2 3.1 37 32-70 3-39 (180)
193 2z43_A DNA repair and recombin 97.9 9.5E-05 3.2E-09 77.7 13.4 138 29-205 102-257 (324)
194 2vp4_A Deoxynucleoside kinase; 97.8 4.5E-06 1.5E-10 83.3 1.8 41 27-74 13-53 (230)
195 2q6t_A DNAB replication FORK h 97.8 7E-05 2.4E-09 82.2 11.1 171 22-222 188-397 (444)
196 2dy1_A Elongation factor G; tr 97.8 9.1E-06 3.1E-10 93.9 3.7 130 28-207 3-137 (665)
197 3tau_A Guanylate kinase, GMP k 97.8 1.2E-05 4E-10 79.0 3.9 29 32-60 6-34 (208)
198 2qt1_A Nicotinamide riboside k 97.7 1.7E-05 5.7E-10 77.4 4.1 31 29-59 16-46 (207)
199 3kl4_A SRP54, signal recogniti 97.6 0.00013 4.6E-09 79.6 8.6 125 33-205 96-223 (433)
200 1rz3_A Hypothetical protein rb 97.5 1.3E-05 4.5E-10 78.2 0.4 39 31-72 19-57 (201)
201 3cf0_A Transitional endoplasmi 97.5 9.4E-05 3.2E-09 76.8 6.7 29 30-58 45-73 (301)
202 3ney_A 55 kDa erythrocyte memb 97.5 3.3E-05 1.1E-09 75.5 2.8 29 31-59 16-44 (197)
203 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.4E-05 1.8E-09 70.5 4.0 31 25-56 15-45 (149)
204 1kag_A SKI, shikimate kinase I 97.5 3.6E-05 1.2E-09 72.5 2.7 27 33-59 3-29 (173)
205 1knq_A Gluconate kinase; ALFA/ 97.5 4.3E-05 1.5E-09 72.2 3.3 35 32-73 6-40 (175)
206 3llm_A ATP-dependent RNA helic 97.4 2.6E-05 9E-10 77.8 1.2 67 148-216 162-229 (235)
207 2qby_A CDC6 homolog 1, cell di 97.4 2.7E-05 9.3E-10 82.4 0.9 28 32-59 43-70 (386)
208 3cr8_A Sulfate adenylyltranfer 97.4 2.7E-05 9.4E-10 87.7 0.7 42 30-74 365-408 (552)
209 1ypw_A Transitional endoplasmi 97.4 0.00013 4.3E-09 86.1 6.0 30 30-59 234-263 (806)
210 3bgw_A DNAB-like replicative h 97.4 0.00027 9.3E-09 77.6 8.2 35 23-57 186-220 (444)
211 1l8q_A Chromosomal replication 97.3 0.00017 6E-09 75.2 6.0 47 162-208 96-143 (324)
212 1w1w_A Structural maintenance 97.3 7.6E-05 2.6E-09 81.5 3.3 32 29-60 21-52 (430)
213 2w58_A DNAI, primosome compone 97.3 0.00016 5.5E-09 69.9 4.2 24 35-58 55-78 (202)
214 3ice_A Transcription terminati 97.2 3.9E-05 1.3E-09 82.1 -1.3 33 26-58 166-198 (422)
215 3h4m_A Proteasome-activating n 97.1 0.00048 1.6E-08 70.2 6.4 28 31-58 48-75 (285)
216 3qks_A DNA double-strand break 97.1 0.00025 8.5E-09 69.4 4.0 30 26-56 16-45 (203)
217 2b8t_A Thymidine kinase; deoxy 97.1 0.00079 2.7E-08 67.0 7.6 53 164-221 89-150 (223)
218 2gj8_A MNME, tRNA modification 97.1 0.00057 2E-08 64.3 6.2 27 32-58 2-28 (172)
219 3lxx_A GTPase IMAP family memb 97.1 0.0048 1.7E-07 61.2 13.2 43 163-205 111-155 (239)
220 1u94_A RECA protein, recombina 97.1 0.0068 2.3E-07 64.5 15.0 34 24-57 51-86 (356)
221 4eaq_A DTMP kinase, thymidylat 97.1 0.00022 7.5E-09 71.2 3.2 37 23-59 12-51 (229)
222 2i1q_A DNA repair and recombin 97.1 0.0015 5.2E-08 68.2 9.8 33 24-56 87-120 (322)
223 2p67_A LAO/AO transport system 97.0 9.3E-05 3.2E-09 78.4 -0.1 40 21-60 43-82 (341)
224 2pez_A Bifunctional 3'-phospho 97.0 0.00034 1.2E-08 66.4 3.5 28 32-59 3-30 (179)
225 1cke_A CK, MSSA, protein (cyti 97.0 0.00032 1.1E-08 68.9 3.4 38 33-70 4-41 (227)
226 3bos_A Putative DNA replicatio 97.0 0.00071 2.4E-08 66.4 5.6 44 163-206 103-148 (242)
227 2www_A Methylmalonic aciduria 96.9 0.00018 6.2E-09 76.5 1.1 37 32-71 72-108 (349)
228 3auy_A DNA double-strand break 96.9 0.00079 2.7E-08 72.0 5.9 31 24-55 16-46 (371)
229 2qor_A Guanylate kinase; phosp 96.9 0.00038 1.3E-08 67.7 3.1 29 31-59 9-37 (204)
230 1mky_A Probable GTP-binding pr 96.8 0.00096 3.3E-08 73.0 6.0 40 36-75 182-230 (439)
231 3d8b_A Fidgetin-like protein 1 96.8 0.0041 1.4E-07 66.0 10.7 27 32-58 115-141 (357)
232 1y63_A LMAJ004144AAA protein; 96.8 0.00046 1.6E-08 66.0 3.0 32 26-57 2-33 (184)
233 3m6a_A ATP-dependent protease 96.8 0.0002 6.7E-09 80.7 0.4 47 22-72 97-143 (543)
234 1q57_A DNA primase/helicase; d 96.7 0.014 4.7E-07 64.8 14.4 171 23-221 231-440 (503)
235 1np6_A Molybdopterin-guanine d 96.7 0.0006 2.1E-08 65.2 2.8 38 35-72 7-44 (174)
236 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.013 4.4E-07 61.3 12.9 28 31-58 42-69 (322)
237 1m2o_B GTP-binding protein SAR 96.7 0.00073 2.5E-08 64.6 3.0 36 21-57 11-46 (190)
238 2if2_A Dephospho-COA kinase; a 96.7 0.00071 2.4E-08 65.4 2.9 21 36-56 3-23 (204)
239 1m7g_A Adenylylsulfate kinase; 96.7 0.00043 1.5E-08 67.7 1.3 40 30-72 21-62 (211)
240 2zts_A Putative uncharacterize 96.7 0.0026 8.8E-08 62.9 7.0 60 162-221 133-206 (251)
241 1f6b_A SAR1; gtpases, N-termin 96.5 0.00026 8.9E-09 68.3 -1.2 36 21-57 13-48 (198)
242 2wji_A Ferrous iron transport 96.5 0.0013 4.6E-08 61.1 3.5 23 36-58 5-27 (165)
243 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0003 1E-08 74.7 -1.2 37 22-58 10-48 (359)
244 2yvu_A Probable adenylyl-sulfa 96.5 0.0013 4.6E-08 62.6 3.4 29 31-59 10-38 (186)
245 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0081 2.8E-07 59.9 9.4 27 32-58 37-63 (262)
246 2v1u_A Cell division control p 96.5 0.0022 7.5E-08 67.6 5.3 27 32-58 42-68 (387)
247 3cm0_A Adenylate kinase; ATP-b 96.4 0.0015 5.2E-08 61.9 3.5 26 32-57 2-27 (186)
248 3t61_A Gluconokinase; PSI-biol 96.4 0.0012 4.1E-08 63.8 2.8 25 34-58 18-42 (202)
249 2ffh_A Protein (FFH); SRP54, s 96.4 0.00078 2.7E-08 73.4 1.1 44 25-73 91-134 (425)
250 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0015 5.2E-08 70.3 3.2 31 27-57 15-45 (396)
251 2qgz_A Helicase loader, putati 96.3 0.0032 1.1E-07 65.5 5.6 52 162-213 212-265 (308)
252 2p5t_B PEZT; postsegregational 96.3 0.00084 2.9E-08 67.7 0.9 46 23-74 22-67 (253)
253 1qhx_A CPT, protein (chloramph 96.3 0.0021 7.3E-08 60.4 3.7 27 33-59 2-28 (178)
254 3kb2_A SPBC2 prophage-derived 96.3 0.002 6.8E-08 60.0 3.4 23 36-58 3-25 (173)
255 1xx6_A Thymidine kinase; NESG, 96.3 0.0054 1.9E-07 59.4 6.5 53 164-221 81-142 (191)
256 1xp8_A RECA protein, recombina 96.3 0.048 1.6E-06 58.1 14.5 28 29-56 69-96 (366)
257 2zej_A Dardarin, leucine-rich 96.2 0.002 7E-08 60.9 3.1 23 36-58 4-26 (184)
258 2wjg_A FEOB, ferrous iron tran 96.2 0.0022 7.4E-08 60.5 3.2 22 36-57 9-30 (188)
259 1sxj_C Activator 1 40 kDa subu 96.2 0.0005 1.7E-08 72.4 -1.4 40 21-60 31-72 (340)
260 1q3t_A Cytidylate kinase; nucl 96.2 0.0023 7.8E-08 63.6 3.4 29 30-58 12-40 (236)
261 1lv7_A FTSH; alpha/beta domain 96.1 0.0018 6E-08 65.1 2.2 34 24-59 37-70 (257)
262 1kht_A Adenylate kinase; phosp 96.1 0.003 1E-07 59.8 3.6 26 33-58 2-27 (192)
263 2chg_A Replication factor C sm 96.1 0.01 3.4E-07 56.8 7.2 41 164-206 102-142 (226)
264 3r20_A Cytidylate kinase; stru 96.1 0.0029 1E-07 63.3 3.4 25 34-58 9-33 (233)
265 3cmw_A Protein RECA, recombina 96.0 0.042 1.4E-06 69.0 14.3 29 30-58 728-756 (1706)
266 2r8r_A Sensor protein; KDPD, P 96.0 0.0021 7.3E-08 63.8 2.2 44 161-204 81-125 (228)
267 1j8m_F SRP54, signal recogniti 96.0 0.00083 2.8E-08 69.7 -0.9 35 25-60 89-124 (297)
268 2rhm_A Putative kinase; P-loop 96.0 0.0034 1.2E-07 59.6 3.3 27 32-58 3-29 (193)
269 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.015 5E-07 60.9 8.2 28 29-56 118-145 (331)
270 2ze6_A Isopentenyl transferase 95.9 0.0035 1.2E-07 63.3 3.3 25 35-59 2-26 (253)
271 2qag_A Septin-2, protein NEDD5 95.9 0.0023 7.8E-08 68.2 1.8 32 21-58 30-61 (361)
272 2j9r_A Thymidine kinase; TK1, 95.9 0.021 7.3E-07 56.1 8.5 53 164-221 101-162 (214)
273 2v54_A DTMP kinase, thymidylat 95.9 0.0046 1.6E-07 59.3 3.7 26 33-58 3-28 (204)
274 3trf_A Shikimate kinase, SK; a 95.8 0.0045 1.5E-07 58.6 3.5 26 33-58 4-29 (185)
275 1ex7_A Guanylate kinase; subst 95.8 0.004 1.4E-07 60.0 3.2 24 36-59 3-26 (186)
276 3io5_A Recombination and repai 95.8 0.031 1E-06 58.4 10.0 27 29-56 24-51 (333)
277 3lw7_A Adenylate kinase relate 95.8 0.0043 1.5E-07 57.4 3.3 19 36-54 3-21 (179)
278 1vht_A Dephospho-COA kinase; s 95.8 0.0044 1.5E-07 60.5 3.5 24 33-56 3-26 (218)
279 3iij_A Coilin-interacting nucl 95.8 0.0043 1.5E-07 58.6 3.0 26 32-57 9-34 (180)
280 2plr_A DTMP kinase, probable t 95.8 0.0054 1.9E-07 59.0 3.8 27 33-59 3-29 (213)
281 2orv_A Thymidine kinase; TP4A 95.7 0.037 1.3E-06 55.1 9.7 53 163-221 89-150 (234)
282 2jaq_A Deoxyguanosine kinase; 95.7 0.0051 1.8E-07 58.8 3.4 23 36-58 2-24 (205)
283 1ly1_A Polynucleotide kinase; 95.7 0.0061 2.1E-07 57.0 3.6 22 35-56 3-24 (181)
284 2wwf_A Thymidilate kinase, put 95.6 0.0058 2E-07 59.0 3.5 27 32-58 8-34 (212)
285 1gvn_B Zeta; postsegregational 95.6 0.0057 1.9E-07 63.0 3.4 28 31-58 30-57 (287)
286 2c95_A Adenylate kinase 1; tra 95.6 0.0059 2E-07 58.1 3.2 27 32-58 7-33 (196)
287 3k53_A Ferrous iron transport 95.6 0.0052 1.8E-07 62.4 2.9 23 36-58 5-27 (271)
288 1uf9_A TT1252 protein; P-loop, 95.6 0.0063 2.2E-07 58.2 3.4 24 34-57 8-31 (203)
289 1gtv_A TMK, thymidylate kinase 95.5 0.0032 1.1E-07 61.0 1.1 24 36-59 2-25 (214)
290 1via_A Shikimate kinase; struc 95.5 0.0063 2.2E-07 57.2 3.2 23 36-58 6-28 (175)
291 1xjc_A MOBB protein homolog; s 95.5 0.0047 1.6E-07 58.6 2.3 25 35-59 5-29 (169)
292 2qp9_X Vacuolar protein sortin 95.5 0.036 1.2E-06 58.6 9.4 27 32-58 82-108 (355)
293 1nn5_A Similar to deoxythymidy 95.5 0.0067 2.3E-07 58.6 3.3 27 32-58 7-33 (215)
294 4dcu_A GTP-binding protein ENG 95.5 0.019 6.3E-07 63.0 7.2 53 150-206 88-141 (456)
295 1tev_A UMP-CMP kinase; ploop, 95.4 0.0083 2.8E-07 56.8 3.7 25 33-57 2-26 (196)
296 1nks_A Adenylate kinase; therm 95.4 0.0074 2.5E-07 57.0 3.1 23 36-58 3-25 (194)
297 4b4t_L 26S protease subunit RP 95.4 0.07 2.4E-06 58.2 11.1 71 157-233 267-354 (437)
298 2ged_A SR-beta, signal recogni 95.3 0.0073 2.5E-07 57.1 3.0 24 35-58 49-72 (193)
299 1z2a_A RAS-related protein RAB 95.3 0.0078 2.7E-07 55.1 2.9 23 36-58 7-29 (168)
300 2nzj_A GTP-binding protein REM 95.3 0.0088 3E-07 55.2 3.3 23 36-58 6-28 (175)
301 3hu3_A Transitional endoplasmi 95.3 0.021 7.2E-07 63.3 6.8 28 31-58 235-262 (489)
302 2erx_A GTP-binding protein DI- 95.3 0.0089 3.1E-07 54.8 3.3 22 36-57 5-26 (172)
303 3q72_A GTP-binding protein RAD 95.2 0.0074 2.5E-07 55.3 2.5 22 37-58 5-26 (166)
304 4b4t_M 26S protease regulatory 95.2 0.056 1.9E-06 58.9 9.8 28 31-58 212-239 (434)
305 3vfd_A Spastin; ATPase, microt 95.2 0.099 3.4E-06 55.8 11.8 27 32-58 146-172 (389)
306 2bwj_A Adenylate kinase 5; pho 95.2 0.0075 2.6E-07 57.5 2.6 28 31-58 9-36 (199)
307 1kao_A RAP2A; GTP-binding prot 95.2 0.0088 3E-07 54.5 3.0 23 36-58 5-27 (167)
308 3cmw_A Protein RECA, recombina 95.2 0.18 6.2E-06 63.4 15.4 152 23-228 370-557 (1706)
309 2dyk_A GTP-binding protein; GT 95.2 0.009 3.1E-07 54.3 3.0 23 36-58 3-25 (161)
310 1ko7_A HPR kinase/phosphatase; 95.2 0.015 5.1E-07 60.6 4.9 36 21-57 132-167 (314)
311 3q85_A GTP-binding protein REM 95.2 0.0099 3.4E-07 54.6 3.2 22 37-58 5-26 (169)
312 1aky_A Adenylate kinase; ATP:A 95.2 0.011 3.8E-07 57.8 3.7 27 32-58 2-28 (220)
313 1u8z_A RAS-related protein RAL 95.2 0.0091 3.1E-07 54.4 2.9 23 36-58 6-28 (168)
314 3co5_A Putative two-component 95.2 0.031 1.1E-06 50.8 6.5 42 164-206 75-116 (143)
315 2ce2_X GTPase HRAS; signaling 95.2 0.0084 2.9E-07 54.4 2.6 23 36-58 5-27 (166)
316 3tw8_B RAS-related protein RAB 95.1 0.0094 3.2E-07 55.3 2.9 23 36-58 11-33 (181)
317 2vli_A Antibiotic resistance p 95.1 0.0078 2.7E-07 56.6 2.3 26 33-58 4-29 (183)
318 4b4t_K 26S protease regulatory 95.1 0.083 2.8E-06 57.4 10.7 28 31-58 203-230 (428)
319 2z0h_A DTMP kinase, thymidylat 95.1 0.011 3.8E-07 56.2 3.4 23 36-58 2-24 (197)
320 1z0j_A RAB-22, RAS-related pro 95.1 0.0099 3.4E-07 54.5 3.0 23 36-58 8-30 (170)
321 1z08_A RAS-related protein RAB 95.1 0.01 3.4E-07 54.6 3.0 23 36-58 8-30 (170)
322 3b1v_A Ferrous iron uptake tra 95.1 0.01 3.5E-07 60.6 3.3 23 36-58 5-27 (272)
323 1ek0_A Protein (GTP-binding pr 95.1 0.01 3.4E-07 54.3 2.9 23 36-58 5-27 (170)
324 3ake_A Cytidylate kinase; CMP 95.1 0.011 3.7E-07 56.8 3.1 23 36-58 4-26 (208)
325 1c1y_A RAS-related protein RAP 95.0 0.01 3.6E-07 54.1 2.9 23 36-58 5-27 (167)
326 1g16_A RAS-related protein SEC 95.0 0.0095 3.2E-07 54.6 2.6 22 37-58 6-27 (170)
327 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.011 3.6E-07 54.9 3.0 23 36-58 9-31 (177)
328 2lkc_A Translation initiation 95.0 0.014 4.7E-07 54.1 3.7 26 33-58 7-32 (178)
329 1ky3_A GTP-binding protein YPT 95.0 0.011 3.7E-07 54.9 3.0 23 36-58 10-32 (182)
330 3lxw_A GTPase IMAP family memb 95.0 0.011 3.8E-07 59.2 3.2 23 36-58 23-45 (247)
331 1zd8_A GTP:AMP phosphotransfer 95.0 0.011 3.9E-07 58.0 3.3 27 32-58 5-31 (227)
332 1fzq_A ADP-ribosylation factor 95.0 0.0094 3.2E-07 56.2 2.5 22 36-57 18-39 (181)
333 1svi_A GTP-binding protein YSX 95.0 0.01 3.4E-07 56.2 2.7 23 36-58 25-47 (195)
334 3ihw_A Centg3; RAS, centaurin, 94.9 0.026 8.8E-07 53.4 5.4 22 36-57 22-43 (184)
335 3cmu_A Protein RECA, recombina 94.9 0.12 3.9E-06 66.0 12.6 149 23-225 370-554 (2050)
336 2fn4_A P23, RAS-related protei 94.9 0.011 3.7E-07 54.9 2.7 23 36-58 11-33 (181)
337 3pqc_A Probable GTP-binding pr 94.9 0.011 3.7E-07 55.6 2.7 23 36-58 25-47 (195)
338 2cdn_A Adenylate kinase; phosp 94.9 0.015 5.1E-07 55.9 3.7 26 33-58 19-44 (201)
339 4b4t_J 26S protease regulatory 94.9 0.097 3.3E-06 56.3 10.3 26 33-58 181-206 (405)
340 1r2q_A RAS-related protein RAB 94.9 0.012 4.2E-07 53.7 2.9 22 36-57 8-29 (170)
341 2cxx_A Probable GTP-binding pr 94.9 0.012 3.9E-07 55.3 2.7 22 37-58 4-25 (190)
342 3clv_A RAB5 protein, putative; 94.9 0.012 4.2E-07 55.4 3.0 23 36-58 9-31 (208)
343 4dsu_A GTPase KRAS, isoform 2B 94.8 0.013 4.3E-07 54.9 3.0 23 36-58 6-28 (189)
344 2hxs_A RAB-26, RAS-related pro 94.8 0.014 4.8E-07 54.1 3.2 23 36-58 8-30 (178)
345 3fb4_A Adenylate kinase; psych 94.8 0.014 4.8E-07 56.6 3.4 23 36-58 2-24 (216)
346 1upt_A ARL1, ADP-ribosylation 94.8 0.013 4.4E-07 53.9 2.9 23 36-58 9-31 (171)
347 3dm5_A SRP54, signal recogniti 94.8 0.21 7E-06 54.5 12.8 27 33-59 99-125 (443)
348 2pbr_A DTMP kinase, thymidylat 94.8 0.015 5.1E-07 55.0 3.4 23 36-58 2-24 (195)
349 3bc1_A RAS-related protein RAB 94.8 0.013 4.5E-07 54.9 2.9 23 36-58 13-35 (195)
350 1zuh_A Shikimate kinase; alpha 94.8 0.016 5.6E-07 53.8 3.5 24 35-58 8-31 (168)
351 2oil_A CATX-8, RAS-related pro 94.8 0.013 4.6E-07 55.3 2.9 23 36-58 27-49 (193)
352 1ukz_A Uridylate kinase; trans 94.8 0.016 5.4E-07 55.7 3.5 26 33-58 14-39 (203)
353 1r8s_A ADP-ribosylation factor 94.8 0.014 4.7E-07 53.3 2.9 21 37-57 3-23 (164)
354 1zak_A Adenylate kinase; ATP:A 94.7 0.013 4.4E-07 57.4 2.8 26 33-58 4-29 (222)
355 1e6c_A Shikimate kinase; phosp 94.7 0.014 4.8E-07 54.3 2.9 24 35-58 3-26 (173)
356 1moz_A ARL1, ADP-ribosylation 94.7 0.0095 3.2E-07 55.6 1.6 24 33-56 17-40 (183)
357 1jal_A YCHF protein; nucleotid 94.7 0.023 7.9E-07 60.4 4.7 24 34-57 2-25 (363)
358 2y8e_A RAB-protein 6, GH09086P 94.7 0.014 4.6E-07 54.0 2.6 23 36-58 16-38 (179)
359 3dl0_A Adenylate kinase; phosp 94.6 0.017 5.7E-07 56.1 3.4 23 36-58 2-24 (216)
360 2g6b_A RAS-related protein RAB 94.6 0.015 5.2E-07 54.0 2.9 23 36-58 12-34 (180)
361 2a9k_A RAS-related protein RAL 94.6 0.015 5.2E-07 54.1 2.9 23 36-58 20-42 (187)
362 2pt5_A Shikimate kinase, SK; a 94.6 0.018 6.3E-07 53.3 3.5 23 36-58 2-24 (168)
363 1z0f_A RAB14, member RAS oncog 94.6 0.015 5.2E-07 53.7 2.9 23 36-58 17-39 (179)
364 1wf3_A GTP-binding protein; GT 94.6 0.017 5.7E-07 59.9 3.5 26 32-58 6-31 (301)
365 1qf9_A UMP/CMP kinase, protein 94.6 0.017 6E-07 54.4 3.3 24 34-57 6-29 (194)
366 3a4m_A L-seryl-tRNA(SEC) kinas 94.6 0.019 6.5E-07 57.9 3.8 26 33-58 3-28 (260)
367 3t5d_A Septin-7; GTP-binding p 94.6 0.014 4.6E-07 59.4 2.6 23 36-58 10-32 (274)
368 3con_A GTPase NRAS; structural 94.6 0.016 5.4E-07 54.6 2.9 23 36-58 23-45 (190)
369 2iyv_A Shikimate kinase, SK; t 94.6 0.015 5.1E-07 54.9 2.7 24 35-58 3-26 (184)
370 2qmh_A HPR kinase/phosphorylas 94.6 0.029 1E-06 54.6 4.8 37 21-58 22-58 (205)
371 2efe_B Small GTP-binding prote 94.6 0.016 5.6E-07 53.8 3.0 23 36-58 14-36 (181)
372 3iby_A Ferrous iron transport 94.5 0.016 5.4E-07 58.6 2.9 23 36-58 3-25 (256)
373 3tlx_A Adenylate kinase 2; str 94.5 0.021 7.1E-07 57.1 3.7 25 33-57 28-52 (243)
374 3t1o_A Gliding protein MGLA; G 94.5 0.019 6.6E-07 53.9 3.3 24 36-59 16-39 (198)
375 3iev_A GTP-binding protein ERA 94.5 0.019 6.4E-07 59.6 3.5 23 36-58 12-34 (308)
376 1nrj_B SR-beta, signal recogni 94.5 0.017 5.8E-07 55.8 2.9 23 36-58 14-36 (218)
377 1ksh_A ARF-like protein 2; sma 94.5 0.018 6.2E-07 54.0 3.0 26 33-58 17-42 (186)
378 2bov_A RAla, RAS-related prote 94.5 0.017 5.9E-07 54.9 2.9 23 36-58 16-38 (206)
379 2bme_A RAB4A, RAS-related prot 94.4 0.016 5.5E-07 54.1 2.6 23 36-58 12-34 (186)
380 1vg8_A RAS-related protein RAB 94.4 0.018 6.2E-07 54.9 3.0 23 36-58 10-32 (207)
381 2gf9_A RAS-related protein RAB 94.4 0.018 6.1E-07 54.3 2.9 23 36-58 24-46 (189)
382 3cbq_A GTP-binding protein REM 94.4 0.015 5.1E-07 55.7 2.3 22 36-57 25-46 (195)
383 3tkl_A RAS-related protein RAB 94.4 0.019 6.4E-07 54.2 2.9 23 36-58 18-40 (196)
384 2xtp_A GTPase IMAP family memb 94.4 0.018 6.2E-07 57.6 3.0 23 36-58 24-46 (260)
385 2gf0_A GTP-binding protein DI- 94.4 0.017 6E-07 54.6 2.7 22 36-57 10-31 (199)
386 2dby_A GTP-binding protein; GD 94.3 0.018 6E-07 61.5 2.9 21 37-57 4-24 (368)
387 3kkq_A RAS-related protein M-R 94.3 0.02 6.7E-07 53.5 2.9 23 36-58 20-42 (183)
388 2fg5_A RAB-22B, RAS-related pr 94.3 0.018 6.2E-07 54.6 2.7 23 36-58 25-47 (192)
389 1zbd_A Rabphilin-3A; G protein 94.3 0.022 7.5E-07 54.3 3.2 23 36-58 10-32 (203)
390 3a1s_A Iron(II) transport prot 94.3 0.021 7.3E-07 57.6 3.3 23 36-58 7-29 (258)
391 1m7b_A RND3/RHOE small GTP-bin 94.3 0.018 6.2E-07 54.1 2.6 23 36-58 9-31 (184)
392 1jwy_B Dynamin A GTPase domain 94.3 0.02 6.7E-07 59.1 3.0 23 36-58 26-48 (315)
393 1mh1_A RAC1; GTP-binding, GTPa 94.3 0.02 7E-07 53.3 2.9 22 36-57 7-28 (186)
394 1uj2_A Uridine-cytidine kinase 94.3 0.023 7.7E-07 56.9 3.4 24 35-58 23-46 (252)
395 2grj_A Dephospho-COA kinase; T 94.3 0.024 8.1E-07 54.8 3.4 24 34-57 12-35 (192)
396 2il1_A RAB12; G-protein, GDP, 94.2 0.02 6.9E-07 54.3 2.8 23 36-58 28-50 (192)
397 1z06_A RAS-related protein RAB 94.2 0.021 7.3E-07 53.8 3.0 23 36-58 22-44 (189)
398 1jbk_A CLPB protein; beta barr 94.2 0.027 9.1E-07 52.4 3.6 27 32-58 41-67 (195)
399 4b4t_H 26S protease regulatory 94.2 0.11 3.9E-06 56.7 9.0 28 31-58 240-267 (467)
400 3i8s_A Ferrous iron transport 94.2 0.021 7E-07 58.2 3.0 23 36-58 5-27 (274)
401 2cjw_A GTP-binding protein GEM 94.2 0.021 7.2E-07 54.4 2.9 22 36-57 8-29 (192)
402 4dhe_A Probable GTP-binding pr 94.2 0.012 4.2E-07 57.0 1.1 23 36-58 31-53 (223)
403 3oes_A GTPase rhebl1; small GT 94.1 0.02 6.9E-07 54.7 2.6 24 35-58 25-48 (201)
404 2a5j_A RAS-related protein RAB 94.1 0.023 7.8E-07 53.8 2.9 23 36-58 23-45 (191)
405 2wsm_A Hydrogenase expression/ 94.1 0.022 7.6E-07 55.2 2.9 24 35-58 31-54 (221)
406 3bwd_D RAC-like GTP-binding pr 94.1 0.023 7.9E-07 52.8 2.9 23 36-58 10-32 (182)
407 4fcw_A Chaperone protein CLPB; 94.1 0.025 8.6E-07 57.9 3.4 26 34-59 47-72 (311)
408 1zj6_A ADP-ribosylation factor 94.1 0.023 7.9E-07 53.4 2.9 23 35-57 17-39 (187)
409 2qu8_A Putative nucleolar GTP- 94.1 0.023 7.9E-07 55.6 3.0 23 35-57 30-52 (228)
410 3t5g_A GTP-binding protein RHE 94.1 0.021 7.2E-07 53.2 2.6 22 36-57 8-29 (181)
411 2o52_A RAS-related protein RAB 94.1 0.023 7.9E-07 54.3 2.9 23 36-58 27-49 (200)
412 3dz8_A RAS-related protein RAB 94.1 0.021 7.3E-07 54.0 2.6 23 36-58 25-47 (191)
413 4ag6_A VIRB4 ATPase, type IV s 94.1 0.022 7.4E-07 61.0 3.0 45 164-208 262-309 (392)
414 2h57_A ADP-ribosylation factor 94.1 0.018 6.2E-07 54.3 2.1 23 36-58 23-45 (190)
415 1zd9_A ADP-ribosylation factor 94.1 0.024 8.1E-07 53.6 2.9 22 36-57 24-45 (188)
416 4bas_A ADP-ribosylation factor 94.1 0.024 8.1E-07 53.6 2.9 24 35-58 18-41 (199)
417 2xb4_A Adenylate kinase; ATP-b 94.0 0.028 9.4E-07 55.3 3.4 23 36-58 2-24 (223)
418 1x3s_A RAS-related protein RAB 94.0 0.024 8.2E-07 53.3 2.9 23 36-58 17-39 (195)
419 2bcg_Y Protein YP2, GTP-bindin 94.0 0.022 7.4E-07 54.5 2.6 23 36-58 10-32 (206)
420 2atv_A RERG, RAS-like estrogen 94.0 0.024 8.3E-07 53.8 3.0 23 36-58 30-52 (196)
421 3cph_A RAS-related protein SEC 94.0 0.024 8.2E-07 54.3 2.9 24 35-58 21-44 (213)
422 3be4_A Adenylate kinase; malar 94.0 0.026 8.8E-07 55.1 3.1 26 33-58 4-29 (217)
423 2h17_A ADP-ribosylation factor 94.0 0.021 7.3E-07 53.4 2.5 22 36-57 23-44 (181)
424 2f7s_A C25KG, RAS-related prot 94.0 0.028 9.4E-07 54.3 3.3 23 36-58 27-49 (217)
425 3reg_A RHO-like small GTPase; 94.0 0.025 8.4E-07 53.6 2.9 23 36-58 25-47 (194)
426 1a7j_A Phosphoribulokinase; tr 94.0 0.014 5E-07 60.0 1.3 26 33-58 4-29 (290)
427 2p5s_A RAS and EF-hand domain 94.0 0.025 8.5E-07 53.9 2.9 25 34-58 28-52 (199)
428 3v9p_A DTMP kinase, thymidylat 94.0 0.024 8.1E-07 56.4 2.8 30 30-59 21-50 (227)
429 3a8t_A Adenylate isopentenyltr 93.9 0.036 1.2E-06 58.3 4.2 28 32-59 38-65 (339)
430 2f6r_A COA synthase, bifunctio 93.9 0.026 9E-07 57.7 3.1 23 34-56 75-97 (281)
431 2aka_B Dynamin-1; fusion prote 93.9 0.023 8E-07 57.9 2.7 23 36-58 28-50 (299)
432 2ew1_A RAS-related protein RAB 93.9 0.024 8E-07 54.7 2.6 23 36-58 28-50 (201)
433 4edh_A DTMP kinase, thymidylat 93.9 0.033 1.1E-06 54.7 3.7 28 32-59 4-31 (213)
434 2iwr_A Centaurin gamma 1; ANK 93.9 0.021 7.3E-07 53.0 2.1 22 36-57 9-30 (178)
435 3umf_A Adenylate kinase; rossm 93.8 0.033 1.1E-06 54.9 3.5 29 30-58 25-53 (217)
436 2fv8_A H6, RHO-related GTP-bin 93.8 0.025 8.7E-07 54.3 2.7 23 36-58 27-49 (207)
437 2q3h_A RAS homolog gene family 93.8 0.031 1.1E-06 53.1 3.2 26 33-58 19-44 (201)
438 3c5c_A RAS-like protein 12; GD 93.8 0.029 1E-06 53.0 3.0 23 36-58 23-45 (187)
439 1ltq_A Polynucleotide kinase; 93.8 0.033 1.1E-06 56.9 3.6 23 35-57 3-25 (301)
440 2j1l_A RHO-related GTP-binding 93.7 0.03 1E-06 54.2 3.0 22 36-57 36-57 (214)
441 1e4v_A Adenylate kinase; trans 93.7 0.031 1.1E-06 54.3 3.1 23 36-58 2-24 (214)
442 3llu_A RAS-related GTP-binding 93.7 0.033 1.1E-06 53.0 3.2 24 36-59 22-45 (196)
443 2fh5_B SR-beta, signal recogni 93.7 0.03 1E-06 53.8 2.9 23 36-58 9-31 (214)
444 2fu5_C RAS-related protein RAB 93.7 0.021 7E-07 53.3 1.6 22 36-57 10-31 (183)
445 1ak2_A Adenylate kinase isoenz 93.7 0.038 1.3E-06 54.5 3.7 27 32-58 14-40 (233)
446 1gwn_A RHO-related GTP-binding 93.7 0.028 9.5E-07 54.3 2.6 23 36-58 30-52 (205)
447 2b6h_A ADP-ribosylation factor 93.6 0.028 9.7E-07 53.4 2.5 23 35-57 30-52 (192)
448 3zvl_A Bifunctional polynucleo 93.6 0.034 1.2E-06 60.2 3.4 28 31-58 255-282 (416)
449 3lv8_A DTMP kinase, thymidylat 93.5 0.037 1.3E-06 55.3 3.3 28 32-59 25-52 (236)
450 2gco_A H9, RHO-related GTP-bin 93.5 0.03 1E-06 53.5 2.6 23 36-58 27-49 (201)
451 3def_A T7I23.11 protein; chlor 93.5 0.033 1.1E-06 56.1 3.0 23 36-58 38-60 (262)
452 1sky_E F1-ATPase, F1-ATP synth 93.5 0.04 1.4E-06 60.4 3.8 35 23-58 141-175 (473)
453 2p65_A Hypothetical protein PF 93.5 0.034 1.2E-06 51.7 2.8 27 32-58 41-67 (187)
454 1h65_A Chloroplast outer envel 93.4 0.034 1.2E-06 56.2 2.9 23 36-58 41-63 (270)
455 3exa_A TRNA delta(2)-isopenten 93.4 0.045 1.5E-06 57.0 3.8 25 34-58 3-27 (322)
456 2g3y_A GTP-binding protein GEM 93.4 0.04 1.4E-06 53.8 3.3 22 36-57 39-60 (211)
457 3d3q_A TRNA delta(2)-isopenten 93.3 0.04 1.4E-06 58.0 3.4 24 35-58 8-31 (340)
458 2atx_A Small GTP binding prote 93.3 0.035 1.2E-06 52.4 2.7 23 36-58 20-42 (194)
459 4tmk_A Protein (thymidylate ki 93.2 0.045 1.6E-06 53.7 3.4 27 33-59 2-28 (213)
460 4djt_A GTP-binding nuclear pro 93.2 0.019 6.6E-07 55.4 0.7 23 36-58 13-35 (218)
461 3tmk_A Thymidylate kinase; pho 93.2 0.045 1.5E-06 53.9 3.3 29 32-60 3-31 (216)
462 1njg_A DNA polymerase III subu 93.2 0.051 1.7E-06 52.4 3.6 42 164-207 126-167 (250)
463 3ld9_A DTMP kinase, thymidylat 93.2 0.052 1.8E-06 53.7 3.7 28 32-59 19-46 (223)
464 2ocp_A DGK, deoxyguanosine kin 93.1 0.049 1.7E-06 53.9 3.5 27 33-59 1-27 (241)
465 2h92_A Cytidylate kinase; ross 93.1 0.044 1.5E-06 53.2 3.0 25 34-58 3-27 (219)
466 2hf9_A Probable hydrogenase ni 93.1 0.042 1.4E-06 53.4 2.9 24 35-58 39-62 (226)
467 3cpj_B GTP-binding protein YPT 93.1 0.043 1.5E-06 53.4 3.0 23 36-58 15-37 (223)
468 2x77_A ADP-ribosylation factor 93.1 0.028 9.6E-07 52.9 1.6 23 35-57 23-45 (189)
469 1p5z_B DCK, deoxycytidine kina 93.1 0.035 1.2E-06 55.9 2.3 29 31-59 21-49 (263)
470 3cnl_A YLQF, putative uncharac 93.1 0.044 1.5E-06 55.6 3.1 25 35-59 100-124 (262)
471 2hup_A RAS-related protein RAB 93.0 0.041 1.4E-06 52.7 2.7 23 36-58 31-53 (201)
472 2yc2_C IFT27, small RAB-relate 93.0 0.021 7.1E-07 54.4 0.5 22 36-57 22-43 (208)
473 3tqf_A HPR(Ser) kinase; transf 93.0 0.077 2.7E-06 50.4 4.4 36 21-57 4-39 (181)
474 3sr0_A Adenylate kinase; phosp 92.9 0.055 1.9E-06 52.8 3.4 23 36-58 2-24 (206)
475 3crm_A TRNA delta(2)-isopenten 92.9 0.053 1.8E-06 56.7 3.4 25 35-59 6-30 (323)
476 4gzl_A RAS-related C3 botulinu 92.8 0.046 1.6E-06 52.4 2.6 23 35-57 31-53 (204)
477 3q3j_B RHO-related GTP-binding 92.7 0.052 1.8E-06 52.6 2.9 23 36-58 29-51 (214)
478 2j0v_A RAC-like GTP-binding pr 92.6 0.05 1.7E-06 52.2 2.6 23 36-58 11-33 (212)
479 3foz_A TRNA delta(2)-isopenten 92.5 0.071 2.4E-06 55.4 3.8 25 34-58 10-34 (316)
480 2r62_A Cell division protease 92.3 0.019 6.3E-07 57.8 -1.0 22 37-58 47-68 (268)
481 3cmu_A Protein RECA, recombina 92.2 0.33 1.1E-05 61.9 9.8 35 22-56 1067-1103(2050)
482 3eph_A TRNA isopentenyltransfe 92.2 0.072 2.5E-06 57.3 3.4 25 34-58 2-26 (409)
483 2orw_A Thymidine kinase; TMTK, 92.1 0.08 2.8E-06 50.5 3.3 53 164-221 76-137 (184)
484 1ypw_A Transitional endoplasmi 91.9 0.027 9.2E-07 66.3 -0.4 32 28-59 505-536 (806)
485 2x2e_A Dynamin-1; nitration, h 91.8 0.052 1.8E-06 57.3 1.9 23 36-58 33-55 (353)
486 1puj_A YLQF, conserved hypothe 91.8 0.089 3E-06 53.9 3.5 24 35-58 121-144 (282)
487 3euj_A Chromosome partition pr 91.8 0.23 7.7E-06 54.8 6.9 70 145-221 378-464 (483)
488 1wxq_A GTP-binding protein; st 91.7 0.076 2.6E-06 57.2 3.0 41 121-170 181-221 (397)
489 3p32_A Probable GTPase RV1496/ 91.7 0.09 3.1E-06 55.5 3.5 26 33-58 78-103 (355)
490 2hjg_A GTP-binding protein ENG 91.6 0.076 2.6E-06 57.7 2.8 23 36-58 5-27 (436)
491 3n70_A Transport activator; si 91.6 0.087 3E-06 47.9 2.8 43 164-208 76-118 (145)
492 3r7w_A Gtpase1, GTP-binding pr 91.5 0.1 3.4E-06 54.0 3.6 25 34-58 3-27 (307)
493 3th5_A RAS-related C3 botulinu 90.8 0.034 1.2E-06 53.1 0.0 23 35-57 31-53 (204)
494 3syl_A Protein CBBX; photosynt 91.5 0.096 3.3E-06 53.5 3.4 27 32-58 65-91 (309)
495 1sxj_D Activator 1 41 kDa subu 91.4 0.086 2.9E-06 54.8 2.9 42 164-207 133-174 (353)
496 3gmt_A Adenylate kinase; ssgci 91.3 0.1 3.6E-06 51.8 3.2 23 36-58 10-32 (230)
497 3l0i_B RAS-related protein RAB 91.2 0.023 7.9E-07 54.2 -1.6 23 36-58 35-57 (199)
498 1f5n_A Interferon-induced guan 91.1 0.087 3E-06 59.6 2.7 33 23-58 30-62 (592)
499 3gj0_A GTP-binding nuclear pro 91.1 0.067 2.3E-06 51.8 1.6 22 36-57 17-39 (221)
500 3geh_A MNME, tRNA modification 91.0 0.084 2.9E-06 58.0 2.5 25 33-57 223-247 (462)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3e-48 Score=394.50 Aligned_cols=219 Identities=23% Similarity=0.344 Sum_probs=190.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++||++.++. ....+.+|+|||+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~y~~--~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 2 VKLKNVTKTYKM--GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp EEEEEEEEEEEE--TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHH
T ss_pred EEEEEEEEEeCC--CCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHH
Confidence 789999999863 11235699999999999999999999999999999999999988 49999999987531
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGer 152 (661)
.++.+|||+|++.+++.+||+||+.++...+.......++..+++.++++.+||.+. .++.++ +||||||
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~ 151 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----QLSGGQQ 151 (235)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----GSCHHHH
T ss_pred HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh-----hCCHHHH
Confidence 123599999999999999999999998765422234566777889999999999875 477764 6999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. +.++||++++|++|+++..+++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKL 229 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcCh
Confidence 9999999999999999999999999999999999999999875 999999999973 5689999999999999999987
Q ss_pred CC
Q 045930 232 KS 233 (661)
Q Consensus 232 ~~ 233 (661)
++
T Consensus 230 ~~ 231 (235)
T 3tif_A 230 RG 231 (235)
T ss_dssp C-
T ss_pred hh
Confidence 65
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3e-48 Score=415.49 Aligned_cols=219 Identities=27% Similarity=0.384 Sum_probs=196.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++||++.++. .+..+.+|+||||++++||++||+||||||||||+|+|+|+.++. +|+|.++|++...
T Consensus 24 mi~v~~ls~~y~~--~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 24 MIKLSNITKVFHQ--GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 98 (366)
T ss_dssp CEEEEEEEEEEEC--SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHH
T ss_pred eEEEEeEEEEeCC--CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 4789999999864 112357999999999999999999999999999999999999884 9999999987531
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.+|||+|++.+++.+||+||+.+++..+ ..++++.+++++++++.+||.+.+|++++ +|||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqkQ 170 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQ 170 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TSCHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 1467999999999999999999999987754 35677788899999999999999998875 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++.++||+|++|++|++++.|+++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 99999999996 5788999999999999999999876
Q ss_pred Ch
Q 045930 233 SA 234 (661)
Q Consensus 233 ~~ 234 (661)
++
T Consensus 250 ev 251 (366)
T 3tui_C 250 EV 251 (366)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.6e-48 Score=402.25 Aligned_cols=217 Identities=27% Similarity=0.407 Sum_probs=192.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. .+.+|+|||+++++||+++|+||||||||||+|+|+|++++ .+|+|.++|++...
T Consensus 7 ~l~i~~ls~~y~~-----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 7 ILKVEELNYNYSD-----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEECTT-----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCCSHHH
T ss_pred EEEEEEEEEEECC-----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEECCccccc
Confidence 3899999998852 24599999999999999999999999999999999999988 49999999987521
Q ss_pred ---ccCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ---DYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ---~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.+|||+|++ ..+..+||+||+.++.... ..+.++.+++++++++.+||.+..++.++ +|||||||
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQ 150 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKK 150 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHH
Confidence 245799999996 3444789999999987653 35677778899999999999999998875 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||+||+||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++ .++.++||+|++|++|++++.|+++
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~ 229 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPK 229 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998 5699999999997 4788999999999999999999987
Q ss_pred Chh
Q 045930 233 SAP 235 (661)
Q Consensus 233 ~~~ 235 (661)
++.
T Consensus 230 ~~~ 232 (275)
T 3gfo_A 230 EVF 232 (275)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.5e-48 Score=413.89 Aligned_cols=215 Identities=25% Similarity=0.388 Sum_probs=193.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec----c-
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR----R- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~----~- 76 (661)
.|+++||++.+. ++.+|+|||+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y~------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSFQ------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCB
T ss_pred EEEEEeEEEEEC------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 489999999884 257999999999999999999999999999999999999884 99999999864 1
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..++.+|||+|+..++|.+||+||+.|+...+ ...+++.+++++++++.+||++.+|++++ +||||||||
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QR 146 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELSGGQQQR 146 (359)
T ss_dssp CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCHHHHHH
T ss_pred cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHH
Confidence 12467999999999999999999999986543 34456677889999999999999999875 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|++|||||||+|||+..+.++.+.|+++.+ .|+|||++|||. .++..+||||++|++|+++..|++++
T Consensus 147 ValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~e 225 (359)
T 3fvq_A 147 AALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHE 225 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999998888754 599999999996 68999999999999999999999865
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
+
T Consensus 226 l 226 (359)
T 3fvq_A 226 L 226 (359)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9.6e-48 Score=413.99 Aligned_cols=215 Identities=25% Similarity=0.394 Sum_probs=196.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++||++.+. .+.+|+|||+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.. ..
T Consensus 3 ~l~~~~l~~~yg------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAWG------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred EEEEEeEEEEEC------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHH
Confidence 589999999884 257999999999999999999999999999999999999884 999999999753 23
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
.+.+|||+|++.++|.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..|++++ +|||||||||+||
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQRVaiA 145 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIG 145 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHHHHHHH
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHHHHHHH
Confidence 467999999999999999999999998764 35677888899999999999999998875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+..+.++.+.|+++.++ |+|+|++|||+ .++..+||+|++|++|+++..|+++++
T Consensus 146 rAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 9999999999999999999999999999999999775 99999999996 689999999999999999999998764
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=9.4e-48 Score=396.80 Aligned_cols=214 Identities=25% Similarity=0.393 Sum_probs=189.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---c-
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---L- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~- 77 (661)
.|+++|+++.++ ++++|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++.. .
T Consensus 24 ~l~i~~l~~~y~------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 24 MIDVHQLKKSFG------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTN 94 (263)
T ss_dssp SEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCC
T ss_pred eEEEEeEEEEEC------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCcccc
Confidence 388999999884 256999999999999999999999999999999999999884 899999998752 1
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSA-HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++||+|++.+++.+||+||+.+.. ..+ ..+.++.+++++++++.+||.+..|+.++ +|||||||
T Consensus 95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQ 166 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SLSGGQAQ 166 (263)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHH
T ss_pred HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHH
Confidence 1346999999999999999999999964 332 23455566789999999999998888875 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++..+||++++|++|++++.|++++
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
T 2olj_A 167 RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPED 245 (263)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999987899999999996 57888999999999999999998654
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2e-47 Score=385.64 Aligned_cols=211 Identities=29% Similarity=0.369 Sum_probs=187.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD--- 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~--- 78 (661)
.|+++|+++.++. +.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y~~------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 4 ILRAENIKKVIRG------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHH
T ss_pred EEEEEeEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHH
Confidence 3789999998742 56999999999999999999999999999999999999884 89999999875321
Q ss_pred ------cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 79 ------YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 79 ------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
++.++||+|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.++ +||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~ 146 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----ELSGGEQ 146 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHH
T ss_pred HHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHH
Confidence 256999999999999999999999976543 23445566789999999999998888875 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+ +.+ ++||++++|++|++++.|+.
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 147 QRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 999999999999999999999999999999999999999987799999999996 455 89999999999999999864
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1e-47 Score=396.75 Aligned_cols=214 Identities=22% Similarity=0.364 Sum_probs=189.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.+. ++.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 6 ~l~i~~l~~~y~------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 6 KLHVIDLHKRYG------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDK 76 (262)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECT
T ss_pred eEEEeeEEEEEC------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccc
Confidence 489999999884 256999999999999999999999999999999999999884 8999999987530
Q ss_pred --------------ccCeEEEEecCCCCCCCCCHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccC
Q 045930 78 --------------DYGGVAYVTQENIMLGTLTVRETIAYSA-HLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGN 141 (661)
Q Consensus 78 --------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~ 141 (661)
.++.+|||+|++.+++.+||+||+.+.. ..+ ..+.++.+++++++++.+||.+. .++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~- 152 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPV- 152 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGG-
T ss_pred cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCcc-
Confidence 1346999999999999999999999864 332 23455567789999999999998 888875
Q ss_pred ccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 142 ~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++..+||++++|+
T Consensus 153 ----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~ 227 (262)
T 1b0u_A 153 ----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLH 227 (262)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEE
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999999987899999999996 57888999999999
Q ss_pred CCeEEEecCCCC
Q 045930 222 GGETVYFGEAKS 233 (661)
Q Consensus 222 ~G~~v~~G~~~~ 233 (661)
+|++++.|++++
T Consensus 228 ~G~i~~~g~~~~ 239 (262)
T 1b0u_A 228 QGKIEEEGDPEQ 239 (262)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEeCCHHH
Confidence 999999998654
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3e-47 Score=391.63 Aligned_cols=215 Identities=28% Similarity=0.386 Sum_probs=190.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 15 ~l~i~~l~~~y~------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 85 (256)
T 1vpl_A 15 AVVVKDLRKRIG------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHE 85 (256)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHH
T ss_pred eEEEEEEEEEEC------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHH
Confidence 478999999874 256999999999999999999999999999999999999884 8999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.++ +|||||||||+|
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~l 157 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLI 157 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHH
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHH
Confidence 2457999999999999999999999976542 23445556788999999999999888875 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++|++++.|++++.
T Consensus 158 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 158 ARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999987899999999996 578889999999999999999986554
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.4e-47 Score=392.91 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=189.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++++|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 7 ~l~i~~l~~~y~------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 7 ILRTENIVKYFG------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77 (257)
T ss_dssp EEEEEEEEEEET------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred EEEEeeeEEEEC------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 378999999884 256999999999999999999999999999999999999884 8999999987532
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhc-CCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCcccc
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHL-RLPS---------NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 145 (661)
.++.++||+|++.+++.+||+||+.+.... +... ....++.+++++++++.+||++..++.++
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 152 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG----- 152 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch-----
Confidence 134699999999999999999999987543 1110 02234456788999999999999998875
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++|++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 5999999999999999999999999999999999999999999999988899999999997 478889999999999999
Q ss_pred EEecCCCC
Q 045930 226 VYFGEAKS 233 (661)
Q Consensus 226 v~~G~~~~ 233 (661)
++.|++++
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 99998765
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.4e-47 Score=405.00 Aligned_cols=216 Identities=25% Similarity=0.462 Sum_probs=194.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.++ + ++.+|+|||+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.. ..
T Consensus 14 ~l~~~~l~~~y~--g---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 14 TIEFVGVEKIYP--G---GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEECCT--T---STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred eEEEEEEEEEEc--C---CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChh
Confidence 578999998772 1 256999999999999999999999999999999999999884 999999998753 23
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.+||++..|++++ +|||||||||+||
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QRvalA 157 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQQRVALA 157 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHH
Confidence 467999999999999999999999987653 34566777889999999999999999875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|||++|||+ .++..+||++++|++|+++..|+++++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999765 99999999996 688999999999999999999987654
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-47 Score=386.07 Aligned_cols=213 Identities=26% Similarity=0.419 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. +.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 6 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 6 VLEVQSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred eEEEEeEEEEECC------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHH
Confidence 4789999998842 56999999999999999999999999999999999999884 9999999987532
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG-LEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+..... ...++.+++++++++.++ |.+..++.++ +||||||||
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LSgGq~qr 147 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQM 147 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHH
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChh-----hCCHHHHHH
Confidence 1345999999999999999999999864211 123445677889999995 9888888775 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 148 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999987899999999996 57889999999999999999987654
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.1e-46 Score=404.23 Aligned_cols=215 Identities=24% Similarity=0.375 Sum_probs=194.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++..
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 3 GVRLVDVWKVFG------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGT
T ss_pred EEEEEeEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECcccccc
Confidence 489999999884 256999999999999999999999999999999999999884 999999997642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
..++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.+||++..+++++ +||||||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~ 145 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----ELSGGQR 145 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHH
T ss_pred ccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----cCCHHHH
Confidence 12467999999999999999999999987654 34566777889999999999999998875 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++|||+ .++..+||++++|++|+++..|++
T Consensus 146 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~ 224 (372)
T 1g29_1 146 QRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSP 224 (372)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 99999999996 688999999999999999999998
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
+++
T Consensus 225 ~~l 227 (372)
T 1g29_1 225 DEV 227 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-46 Score=404.04 Aligned_cols=215 Identities=28% Similarity=0.424 Sum_probs=194.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.. ..
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKKFG------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEESS------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred EEEEEeEEEEEC------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHh
Confidence 489999999874 256999999999999999999999999999999999999884 999999998753 22
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.+||++..+++++ +|||||||||+||
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalA 145 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQRVAIA 145 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHH
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987653 34566777889999999999999998875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 146 RALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp HHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999765 99999999996 688999999999999999999998664
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1e-46 Score=404.28 Aligned_cols=215 Identities=23% Similarity=0.410 Sum_probs=192.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.. ..
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYFG------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChh
Confidence 489999999884 256999999999999999999999999999999999999884 999999998753 22
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..+++++||+||+.|..+.+ ..++++.+++++++++.+||++..+++++ +|||||||||+||
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~QRvalA 145 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQRVALA 145 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999986543 23445556789999999999999999875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 146 RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999765 99999999996 678899999999999999999998765
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.1e-46 Score=403.87 Aligned_cols=215 Identities=25% Similarity=0.413 Sum_probs=193.3
Q ss_pred eEEEEEEEEEeecCCcccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRR--LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +. +|+|||+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++..
T Consensus 3 ~l~i~~l~~~y~~------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEEGG------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETT
T ss_pred EEEEEeEEEEECC------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccc
Confidence 4899999998842 45 999999999999999999999999999999999999884 999999998642
Q ss_pred -----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 77 -----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 77 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
..++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.+||++..|++++ +|||||
T Consensus 74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~LSGGq 145 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQ 145 (353)
T ss_dssp EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHH
T ss_pred cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHH
Confidence 12467999999999999999999999986543 34566777889999999999999999875 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|||++|||+ .++..+||++++|++|+++..|+
T Consensus 146 ~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~ 224 (353)
T 1oxx_K 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGK 224 (353)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999765 99999999996 68899999999999999999998
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
++++
T Consensus 225 ~~~l 228 (353)
T 1oxx_K 225 PEDL 228 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.6e-46 Score=388.44 Aligned_cols=213 Identities=25% Similarity=0.345 Sum_probs=188.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.+. ++.+|+|||+++++||+++|+||||||||||+|+|+|++++. +|+|.++|++...
T Consensus 11 ~l~~~~l~~~~~------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 11 LLEASHLHYHVQ------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPK 81 (266)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHH
T ss_pred eEEEEeEEEEeC------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHH
Confidence 488999999874 267999999999999999999999999999999999999884 8999999997532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++.+++.+||+||+.++.... ..++.+++++++++.+||.+..++.++ +|||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~QRv~ 151 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGGEQQRVQ 151 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHH
Confidence 1356999999999888999999999876432 123345678999999999999988875 59999999999
Q ss_pred HHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 157 IALEILT------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 157 Ia~aL~~------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++|||+ +++.++||++++|++|++++.|
T Consensus 152 iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 9999999 99999999999999999999999999999876 57999999996 5788999999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
++++.
T Consensus 231 ~~~~~ 235 (266)
T 4g1u_C 231 TPEEV 235 (266)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 97654
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.1e-46 Score=403.72 Aligned_cols=215 Identities=23% Similarity=0.373 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.. ..
T Consensus 11 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 11 EVKLENLTKRFG------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEEC------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChh
Confidence 389999999884 256999999999999999999999999999999999999884 999999998753 22
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..+++++||+||+.|+.+.+ ..++++.+++++++++.+||++..+++++ +|||||||||+||
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalA 153 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQRVAVA 153 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999975432 34566777889999999999999999875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 154 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 154 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999775 99999999996 688899999999999999999998765
No 19
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5e-46 Score=379.12 Aligned_cols=209 Identities=25% Similarity=0.396 Sum_probs=184.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---ccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~ 79 (661)
++++|+++.++. +|+|+|+++++ |+++|+||||||||||||+|+|++++. +|+|.++|++.. ..+
T Consensus 2 l~~~~l~~~y~~--------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRLGN--------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEETT--------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTT
T ss_pred EEEEEEEEEeCC--------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhh
Confidence 688999998731 49999999999 999999999999999999999999884 899999998753 224
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.+|||+|++.+++.+||+||+.+....+ .....+++++++++.+||.+..++.++ +|||||||||+||+
T Consensus 70 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAr 139 (240)
T 2onk_A 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALAR 139 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHH
T ss_pred CcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHH
Confidence 67999999999999999999999864321 122235778999999999998888875 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++ .++..+||++++|++|++++.|++++.
T Consensus 140 al~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999765 99999999996 578899999999999999999986543
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.1e-46 Score=383.84 Aligned_cols=220 Identities=26% Similarity=0.390 Sum_probs=187.4
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cc
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LD 78 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~ 78 (661)
|.++++|+++.++. +....+.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++.. ..
T Consensus 1 ~~l~~~~l~~~y~~-~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~ 76 (266)
T 2yz2_A 1 MRIEVVNVSHIFHR-GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEI 76 (266)
T ss_dssp CCEEEEEEEEEEST-TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHH
T ss_pred CEEEEEEEEEEecC-CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHh
Confidence 45899999998851 0000156999999999999999999999999999999999999884 999999998753 12
Q ss_pred cCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccccccCHHHHHHH
Q 045930 79 YGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE--DCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 79 ~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSgGerqRv 155 (661)
++.+|||+|++ ..++.+||+||+.+..... .+.++.+++++++++.+||. +..++.++ +|||||||||
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq~qRv 147 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGEKRRV 147 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHHHHHH
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChh-----hCCHHHHHHH
Confidence 45799999995 5667899999999865321 12223346789999999999 88888875 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|++++.
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987799999999997 467889999999999999999986554
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.7e-46 Score=396.23 Aligned_cols=210 Identities=22% Similarity=0.416 Sum_probs=187.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
|+++|+++.++ ++ +|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++... .+
T Consensus 2 l~~~~l~~~y~------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 2 IEIESLSRKWK------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEEEEECS------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHH
T ss_pred EEEEEEEEEEC------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhh
Confidence 78999998874 25 999999999999999999999999999999999999884 9999999987531 24
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.+|||+|+..+++.+||+||+.|+...+. .+++ ++++++++.+||++..|++++ +|||||||||+|||
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalAr 140 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALAR 140 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHH
Confidence 579999999999999999999999876431 1122 678999999999999999875 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++|||+ .++..++|++++|++|+++..|++++.
T Consensus 141 aL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999765 99999999996 678999999999999999999987654
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.3e-45 Score=378.46 Aligned_cols=216 Identities=24% Similarity=0.314 Sum_probs=180.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR--LSGNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++ ++.+|+|||+++++||+++|+||||||||||+|+|+|+ +++ .+|+|.++|++...
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASID------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSC
T ss_pred eEEEEeEEEEEC------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCC
Confidence 388999999884 25699999999999999999999999999999999998 555 58999999987531
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccccc-cCHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHWRG-ISGGE 151 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~~~~-LSgGe 151 (661)
.+..++|++|++.+++.+||+||+.+............++..++++++++.+|| .+..|+.++ . |||||
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 148 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EGFSGGE 148 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC----H
T ss_pred HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCCHHH
Confidence 124589999999999999999999986532101112334556778999999999 578888774 5 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEecC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVYFGE 230 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~~G~ 230 (661)
||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+ ||++++|++|++++.|+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeC
Confidence 9999999999999999999999999999999999999999977799999999997 467777 59999999999999998
Q ss_pred CC
Q 045930 231 AK 232 (661)
Q Consensus 231 ~~ 232 (661)
++
T Consensus 228 ~~ 229 (250)
T 2d2e_A 228 PE 229 (250)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-45 Score=384.64 Aligned_cols=217 Identities=24% Similarity=0.352 Sum_probs=183.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--c--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--L-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~-- 77 (661)
.|+++|+++.++ ++++|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++.. .
T Consensus 21 ~l~~~~l~~~y~------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 21 LIQLDQIGRMKQ------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91 (279)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CC
T ss_pred eEEEEeEEEEEC------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCC
Confidence 478999999874 256999999999999999999999999999999999999884 899999997643 1
Q ss_pred ---ccCeEEEEecCCCC--CCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 ---DYGGVAYVTQENIM--LGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l--~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.++.++||+|++.+ .+.+||+||+.++...... .....++.+++++++++.+||++..++.++ +|||||
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq 166 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGE 166 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHH
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHH
Confidence 14579999999754 3457999999875321100 011123445778999999999999888875 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE--EEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI--ISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tv--i~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++ .++.++||++++|++|++++.|
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998779999 9999996 5778899999999999999999
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
++++
T Consensus 246 ~~~~ 249 (279)
T 2ihy_A 246 AVED 249 (279)
T ss_dssp EHHH
T ss_pred CHHH
Confidence 7654
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.3e-44 Score=371.64 Aligned_cols=209 Identities=28% Similarity=0.375 Sum_probs=181.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++. ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.+ ++.
T Consensus 4 ~l~i~~l~~~y~~-----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~ 67 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQS 67 (253)
T ss_dssp EEEEEEEEEEETT-----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSC
T ss_pred eEEEeeEEEEeCC-----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------ecc
Confidence 3889999998741 256999999999999999999999999999999999999884 899982 356
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
++||+|++.+++.+||+||+.+....... .....++.+++++++++.+||.+..++.++ +|||||||||+||+|
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARA 142 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHH
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHHH
Confidence 99999999999999999999987532110 001123445778999999999998888775 599999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|+ ++.|++++
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 143 IASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRN 214 (253)
T ss_dssp HHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHH
Confidence 99999999999999999999999999999999877 99999999996 57889999999999999 99887654
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.9e-44 Score=373.23 Aligned_cols=220 Identities=29% Similarity=0.363 Sum_probs=185.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeecccc-
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRLD- 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~~~- 78 (661)
.|+++|+++.++ ++.+|+|||+++++||+++|+||||||||||||+|+|+. ++ .+|+|.++|++....
T Consensus 20 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 20 MLSIKDLHVSVE------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLALS 90 (267)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGGSC
T ss_pred eEEEEeEEEEEC------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCcCC
Confidence 378999999874 257999999999999999999999999999999999984 34 589999999875311
Q ss_pred -----cCeEEEEecCCCCCCCCCHHHHHHHHHh-cC---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 79 -----YGGVAYVTQENIMLGTLTVRETIAYSAH-LR---LPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 79 -----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
++.++|++|++.+++.+||.|++.+... .+ .....+.++.+++++++++.+||. +..++.++ .+||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LS 166 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFS 166 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCC
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCC
Confidence 2349999999999999999999987542 11 011234455567899999999996 57777764 1499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~ 227 (661)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+ ||++++|++|++++
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999977799999999996 456665 89999999999999
Q ss_pred ecCCCChh
Q 045930 228 FGEAKSAP 235 (661)
Q Consensus 228 ~G~~~~~~ 235 (661)
.|++++..
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99987654
No 26
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.8e-44 Score=369.52 Aligned_cols=203 Identities=29% Similarity=0.424 Sum_probs=179.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++. .+|+|+|+++++||+++|+||||||||||||+|+|++++ . |+|.++|++...
T Consensus 5 l~~~~l~~~----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 5 MQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEET----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEceEEE----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 788888863 489999999999999999999999999999999999987 5 999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++.+||+||+.+... + ... +++++++++.+||++..++.++ +|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~l 137 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRL 137 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHH
Confidence 13569999999999999999999987521 1 111 4568899999999998888775 599999999999
Q ss_pred HHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 158 ALEILTRPQ-------LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 158 a~aL~~~P~-------lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|+||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||++ ..+..+||++++|++|++++.|+
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999 9999999999999999999999999987799999999996 57789999999999999999987
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 217 ~~~ 219 (249)
T 2qi9_C 217 REE 219 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.3e-44 Score=366.53 Aligned_cols=212 Identities=25% Similarity=0.411 Sum_probs=177.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|||+++++||+++|+|||||||||||++|+|++++. +|+|.++|++...
T Consensus 7 ~~~~~~l~~~y~~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKP----DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESST----TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCC----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 4789999998731 1356999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG------NWHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSgG 150 (661)
.++.++||+|++.+++ .||+||+.+... ..+ +++++++++.+++.+..++.+. +.....||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 149 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG 149 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHH
Confidence 1356999999998886 599999987521 112 2356778888888776655431 1124579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++. .+ +.||++++|++|++++.|+
T Consensus 150 q~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~ 226 (247)
T 2ff7_A 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGK 226 (247)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999995 5999999999974 44 4599999999999999998
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 227 ~~~ 229 (247)
T 2ff7_A 227 HKE 229 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.5e-44 Score=374.83 Aligned_cols=215 Identities=28% Similarity=0.415 Sum_probs=177.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++||++.++. +..+.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 16 ~l~~~~l~~~y~~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 16 LVKFQDVSFAYPN---HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CEEEEEEEECCTT---CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEEeCC---CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHH
Confidence 3789999987742 11256999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEE-----ITDVIEEAITEM--GLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++ .||+||+.+..... ...++ ....++++++.+ ||.+..++.++ +|||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~-----~LSg 159 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGN-----QLSG 159 (271)
T ss_dssp HHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGT-----TSCH
T ss_pred HHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcC-----CCCH
Confidence 1356999999998887 59999999863211 11111 122356778887 78777777664 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++ ..+. .||++++|++|++++.
T Consensus 160 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVCEQ 237 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999975 489999999996 3454 5999999999999999
Q ss_pred cCCCCh
Q 045930 229 GEAKSA 234 (661)
Q Consensus 229 G~~~~~ 234 (661)
|++++.
T Consensus 238 g~~~~l 243 (271)
T 2ixe_A 238 GTHLQL 243 (271)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 986543
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.1e-44 Score=375.37 Aligned_cols=212 Identities=28% Similarity=0.421 Sum_probs=176.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. .+.+|+||||++++||++||+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 53 ~i~~~~vs~~y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~ 124 (306)
T 3nh6_A 53 RIEFENVHFSYAD-----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQA 124 (306)
T ss_dssp CEEEEEEEEESST-----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHH
T ss_pred eEEEEEEEEEcCC-----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHH
Confidence 4899999998852 356999999999999999999999999999999999999884 9999999997542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSg 149 (661)
.++.+|||+|++.+|+ .||+||+.++... .+. +.++++++..++.+. .++.+|. ...+|||
T Consensus 125 ~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSG 193 (306)
T 3nh6_A 125 SLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSG 193 (306)
T ss_dssp HHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCH
T ss_pred HHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCH
Confidence 2457999999999885 5999999986321 222 235556666666543 3445543 3457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+|||||+.+|+||||||||+|||+.+...+++.|+++.+ ++|||+++|+++ .+.. ||+|++|++|++++.|
T Consensus 194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 799999999964 5554 9999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 271 ~~~el~ 276 (306)
T 3nh6_A 271 RHEALL 276 (306)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 876543
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-44 Score=359.92 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=172.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ + ++|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|++....++.
T Consensus 10 ~l~~~~ls~~y~------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 79 (214)
T 1sgw_A 10 KLEIRDLSVGYD------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 79 (214)
T ss_dssp EEEEEEEEEESS------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGGG
T ss_pred eEEEEEEEEEeC------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcCc
Confidence 478999998773 2 6999999999999999999999999999999999999884 89999999875323467
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++||+|++.+++.+||+||+.+....+. . ..+ +++++++++.+||++. ++.++ +|||||||||+||+||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~---~-~~~-~~~~~~~l~~~gl~~~-~~~~~-----~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYG---V-KVN-KNEIMDALESVEVLDL-KKKLG-----ELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTT---C-CCC-HHHHHHHHHHTTCCCT-TSBGG-----GSCHHHHHHHHHHHHT
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcC---C-chH-HHHHHHHHHHcCCCcC-CCChh-----hCCHHHHHHHHHHHHH
Confidence 9999999999999999999998765431 1 112 4568899999999887 77664 6999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++..++|++++++
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 9999999999999999999999999999999877999999999974 6788888877554
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-44 Score=366.53 Aligned_cols=212 Identities=25% Similarity=0.405 Sum_probs=177.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----L 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~ 77 (661)
++++|+++.++. ++.+|+|||+++++||+++|+|||||||||||++|+|++++. +|+|.++|++.. .
T Consensus 2 l~~~~l~~~y~~-----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 2 LSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73 (243)
T ss_dssp EEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSC
T ss_pred EEEEEEEEEeCC-----CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHH
Confidence 789999987731 356999999999999999999999999999999999999874 899999998752 1
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccccccCHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG------NWHWRGISGGE 151 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSgGe 151 (661)
.++.++||+|++.+++ .||+||+.+... + ... +++++++++.+++.+..++... +.....|||||
T Consensus 74 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp CTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred HHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence 2457999999998887 499999987521 1 122 2357788999999887765431 12346799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||++ ..+ ..||++++|++|++++.|++
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 699999999996 345 56999999999999988876
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
++.
T Consensus 222 ~~~ 224 (243)
T 1mv5_A 222 NEL 224 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.2e-43 Score=362.06 Aligned_cols=207 Identities=21% Similarity=0.334 Sum_probs=179.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cccC
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYG 80 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~~ 80 (661)
|+++|+++.++.. +..+.+|+|+|++++ ||+++|+||||||||||||+|+|++ |. +|+|.++|++.. ..++
T Consensus 2 l~~~~l~~~y~~~--~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITLSGK--GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEEEEE--TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCT
T ss_pred EEEEEEEEEeCCC--CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhh
Confidence 7899999988520 012569999999999 9999999999999999999999999 74 999999998742 1245
Q ss_pred eEE-EEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHH
Q 045930 81 GVA-YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 81 ~i~-yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
.++ |++|++.+ .+||+||+.+...+. .. .+++++++++.+||. +..++.++ +|||||||||+||
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqkqRv~lA 140 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLY-----KLSAGQSVLVRTS 140 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHHHHHHHH
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChh-----hCCHHHHHHHHHH
Confidence 799 99999877 889999999876542 11 135688999999998 88888775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC-eEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFD-DLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D-~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++||++ .++.++|| ++++|++|++++.|++++.
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp HHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999854 999999996 56788999 9999999999999987654
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=9.8e-43 Score=359.10 Aligned_cols=212 Identities=26% Similarity=0.426 Sum_probs=173.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ...+.+|+|||+++++||+++|+|||||||||||++|+|++++ +|+|.++|++...
T Consensus 17 ~l~i~~l~~~y~~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~ 89 (260)
T 2ghi_A 17 NIEFSDVNFSYPK---QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRN 89 (260)
T ss_dssp CEEEEEEEECCTT---CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEEeCC---CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHH
Confidence 4789999998742 1124699999999999999999999999999999999999864 7999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++ .||+||+.++.. ... ++++.++++.+++.+. .|+.++. .+..|||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSg 158 (260)
T 2ghi_A 90 SIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSG 158 (260)
T ss_dssp HHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCH
T ss_pred HHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCH
Confidence 2467999999998886 599999987421 112 2345667777776543 3333332 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |+|||++||++. .+ ..||++++|++|++++.|
T Consensus 159 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKG 235 (260)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999965 899999999974 44 469999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
++++.
T Consensus 236 ~~~~l 240 (260)
T 2ghi_A 236 THKDL 240 (260)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 86543
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3e-42 Score=348.99 Aligned_cols=202 Identities=22% Similarity=0.375 Sum_probs=165.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++. .++++|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++| .
T Consensus 6 ~l~~~~l~~~y~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~ 70 (229)
T 2pze_A 6 EVVMENVTAFWEE----GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------R 70 (229)
T ss_dssp EEEEEEEEECSST----TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------C
T ss_pred eEEEEEEEEEeCC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------E
Confidence 4789999987742 1357999999999999999999999999999999999999884 99999998 3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCccccccCHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR-------LIGNWHWRGISGGEKKR 154 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~-------~vg~~~~~~LSgGerqR 154 (661)
++|++|++.+++. ||+||+.+... ... .++++.++.+++.+..+. .++. ....||||||||
T Consensus 71 i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqr 138 (229)
T 2pze_A 71 ISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRAR 138 (229)
T ss_dssp EEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHH
T ss_pred EEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHH
Confidence 8999999988886 99999987521 111 123445555565543332 2221 246799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI-LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~-L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|++|+|||||+|||+.++..+++. +++++ +|+|||++||++ ..+ ..||++++|++|++++.|++++
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~ 215 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSE 215 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999997 45664 489999999996 345 4699999999999999998654
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7.1e-42 Score=347.99 Aligned_cols=205 Identities=24% Similarity=0.388 Sum_probs=161.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.++. .++.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++| .
T Consensus 3 ~l~~~~l~~~y~~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g--------~ 67 (237)
T 2cbz_A 3 SITVRNATFTWAR----SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG--------S 67 (237)
T ss_dssp CEEEEEEEEESCT----TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS--------C
T ss_pred eEEEEEEEEEeCC----CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC--------E
Confidence 4899999998742 135799999999999999999999999999999999999987 489999998 3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHH---HHHHcCCCc-cccccccCccccccCHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE---AITEMGLED-CADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~---~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
++||+|++.+ +.+||+||+.+.... ..+. .+++.+ +.+.+++.+ ..++.++ ..+.+|||||||||+|
T Consensus 68 i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~l 138 (237)
T 2cbz_A 68 VAYVPQQAWI-QNDSLRENILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSL 138 (237)
T ss_dssp EEEECSSCCC-CSEEHHHHHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHH
T ss_pred EEEEcCCCcC-CCcCHHHHhhCcccc------CHHH-HHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHH
Confidence 8999999864 578999999875321 1111 111111 122333321 1122222 2345799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK---NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~---~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||||+.+|++|||||||+|||+.++..+++.|+ +++ +|+|||++||++. .+ ..||++++|++|++++.|++++
T Consensus 139 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 214 (237)
T 2cbz_A 139 ARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQE 214 (237)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHH
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999999999999995 443 4899999999974 44 5799999999999999998654
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-42 Score=372.98 Aligned_cols=211 Identities=20% Similarity=0.299 Sum_probs=179.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++||++.++. ..+.+|+|||+++++||+++|+|||||||||||++|+|+++ .+|+|.++|++...
T Consensus 19 ~i~~~~l~~~y~~----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 19 QMTVKDLTAKYTE----GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CEEEEEEEEESSS----SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCHH
T ss_pred eEEEEEEEEEecC----CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCChH
Confidence 4889999998852 13579999999999999999999999999999999999975 38999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN------WHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~------~~~~~LSgG 150 (661)
.++.+|||+|++.+++ +||+||+.+.. ... +++++++++.++|.+..+++++. .....||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 1367999999999987 69999996321 112 34678899999999888887642 112349999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|+++||. +....||+|++|++|+++..|+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~ 236 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDS 236 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999864 479999999996 3556799999999999999999
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
+++.
T Consensus 237 ~~el 240 (390)
T 3gd7_A 237 ILEL 240 (390)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.7e-40 Score=380.57 Aligned_cols=216 Identities=27% Similarity=0.443 Sum_probs=180.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.+++ ++++.+|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||++...
T Consensus 342 i~~~~v~~~y~~---~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~ 415 (595)
T 2yl4_A 342 LEFKNVHFAYPA---RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVW 415 (595)
T ss_dssp EEEEEEEEECSS---CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEeCC---CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHH
Confidence 899999998853 11256999999999999999999999999999999999999884 9999999987532
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSgG 150 (661)
.++.++||+|++.+++. ||+||+.++...+ ...+ +++++++++.+|+.+. .|+.+|+ ...+||||
T Consensus 416 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgG 487 (595)
T 2yl4_A 416 LRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGG 487 (595)
T ss_dssp HHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHH
T ss_pred HHhceEEEccCCcccCC-CHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHH
Confidence 24579999999998875 9999999863210 0122 3457788888887544 5666654 34679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++|||||+++|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|+++ .+ +.||++++|++|++++.|+
T Consensus 488 q~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~ 564 (595)
T 2yl4_A 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGK 564 (595)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999976 899999999973 44 5699999999999999999
Q ss_pred CCChh
Q 045930 231 AKSAP 235 (661)
Q Consensus 231 ~~~~~ 235 (661)
+++..
T Consensus 565 ~~~l~ 569 (595)
T 2yl4_A 565 HEELL 569 (595)
T ss_dssp SCC--
T ss_pred HHHHH
Confidence 88753
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.9e-40 Score=379.16 Aligned_cols=213 Identities=25% Similarity=0.379 Sum_probs=179.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ .++.+|+|+|+++++||++||+||||||||||+|+|+|+++|. +|+|.+||++...
T Consensus 341 ~i~~~~v~~~y~~----~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 341 EVDVKDVTFTYQG----KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLT 413 (582)
T ss_pred eEEEEEEEEEcCC----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHH
Confidence 4789999998852 1256999999999999999999999999999999999999884 8999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA-------DRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. ||+||+.++.. + ..+ +++++++++.+|+.+.. |+.+|+ ...+|||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSg 483 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSG 483 (582)
T ss_pred HHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCH
Confidence 24679999999999875 99999998531 1 122 24577888888876554 444543 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||++++|++|++++.|
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERG 560 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 899999999974 44 579999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 561 ~~~~l 565 (582)
T 3b5x_A 561 RHADL 565 (582)
T ss_pred CHHHH
Confidence 87654
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.9e-40 Score=379.15 Aligned_cols=213 Identities=28% Similarity=0.380 Sum_probs=179.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||++...
T Consensus 341 ~i~~~~v~~~y~~----~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 341 DLEFRNVTFTYPG----REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 413 (582)
T ss_dssp CEEEEEEEECSSS----SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHH
T ss_pred cEEEEEEEEEcCC----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHH
Confidence 3789999998752 1256999999999999999999999999999999999999884 9999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA-------DRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. ||+||+.++.. + ..+ +++++++++.+++.+.. |+.+|+ ...+|||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSg 483 (582)
T 3b60_A 414 SLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSG 483 (582)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCH
T ss_pred HHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCH
Confidence 24579999999999875 99999998531 1 122 24577788888886543 455554 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||++++|++|++++.|
T Consensus 484 Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERG 560 (582)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999975 899999999974 44 579999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 561 ~~~~l 565 (582)
T 3b60_A 561 THSEL 565 (582)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87654
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.5e-40 Score=379.71 Aligned_cols=213 Identities=27% Similarity=0.396 Sum_probs=177.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++++|+|+|+++++||++||+||||||||||+++|+|.++|. +|+|.+||++...
T Consensus 339 ~i~~~~v~~~y~~----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 339 RIDIDHVSFQYND----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 411 (578)
T ss_dssp CEEEEEEEECSCS----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEEcCC----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 4789999998753 2357999999999999999999999999999999999999884 9999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.+|||+|++.+++. ||+||+.++. + ..+. +++.+.++..++.+ -.|+.+|+ ...+|||
T Consensus 412 ~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSg 480 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSG 480 (578)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCH
T ss_pred HHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCH
Confidence 24579999999999877 9999998752 1 1222 33555566655543 45566654 3457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|+++ .+ +.||+|++|++|++++.|
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS-TI-THADKIVVIENGHIVETG 557 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999854 799999999974 44 569999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 558 ~~~el~ 563 (578)
T 4a82_A 558 THRELI 563 (578)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 976543
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.7e-41 Score=381.65 Aligned_cols=213 Identities=27% Similarity=0.409 Sum_probs=176.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|+++++||++||+||||||||||+++|+|++++. +|+|.+||++...
T Consensus 341 ~i~~~~v~~~y~~----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 341 SVSFENVEFRYFE----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLK 413 (587)
T ss_dssp CEEEEEEEECSSS----SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHH
T ss_pred cEEEEEEEEEcCC----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHH
Confidence 4889999998853 2357999999999999999999999999999999999999884 9999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.+++++||+|++.+++. ||+||+.++.. ..+.++ +.+.++..++ .+-.|+.+|+ ...+|||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSg 482 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSG 482 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCH
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCH
Confidence 24679999999999876 99999987521 123332 3334444443 3345566654 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+|||||++||+.++..+.+.|+++. +|+|+|+++|+++ . ...||+|++|++|++++.|
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-T-ALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-H-HTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-H-HHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999985 4899999999974 3 4689999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 560 ~~~el~ 565 (587)
T 3qf4_A 560 THKELL 565 (587)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 976654
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.6e-40 Score=377.83 Aligned_cols=212 Identities=25% Similarity=0.410 Sum_probs=175.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ++++|+|+|+++++||++||+||||||||||+++|+|++++. +|+|.+||.+...
T Consensus 354 ~i~~~~v~~~y~~-----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 354 EIEFKNVWFSYDK-----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRS 425 (598)
T ss_dssp CEEEEEEECCSSS-----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEECCC-----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHH
Confidence 4789999987742 356999999999999999999999999999999999999884 9999999988542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. ||+||+.++. + ..+++ .+.++++..++.+. .|+.+|+ ...+|||
T Consensus 426 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSg 494 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFST-TVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQ 494 (598)
T ss_dssp HHHHHEEEECTTCCCCSS-BHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCH
T ss_pred HHHhceEEEeCCCccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCH
Confidence 24579999999998865 9999998752 1 12222 34555555555443 3444442 2357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+||||||+||+.+...+.+.|+++. +|+|+|+++|+++ .+ +.||+|++|++|++++.|
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECS
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999986 5899999999985 45 459999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 572 ~~~~l~ 577 (598)
T 3qf4_B 572 KHDELI 577 (598)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 876543
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.2e-39 Score=340.69 Aligned_cols=197 Identities=21% Similarity=0.380 Sum_probs=153.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++. .+.+|+|+|+++++||+++|+||||||||||||+|+|++++ .+|+|.++| .+
T Consensus 41 l~~~~l~~~--------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g--------~i 101 (290)
T 2bbs_A 41 LSFSNFSLL--------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG--------RI 101 (290)
T ss_dssp -----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS--------CE
T ss_pred EEEEEEEEc--------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC--------EE
Confidence 566777652 14699999999999999999999999999999999999987 489999987 38
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCccccccCHHHHHHH
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL-------IGNWHWRGISGGEKKRL 155 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~-------vg~~~~~~LSgGerqRv 155 (661)
+|++|++.+++. ||+||+. .. . ... ..+++.++.+++.+..+.. ++. ....||||||||+
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv 168 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 168 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHH
Confidence 999999988885 9999997 32 1 111 1234455666665443322 221 2357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL-KNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L-~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+|||||+.+|++|||||||+|||+.++..+++.+ ++++ +|+|||+++|++ ..+ ..||++++|++|++++.|++++.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999974 5554 489999999996 345 56999999999999999987654
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.7e-39 Score=395.02 Aligned_cols=217 Identities=28% Similarity=0.463 Sum_probs=183.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|++ +++.++|+|||++|+|||.+||+||||||||||+++|.|++++. +|+|.+||.+.+.
T Consensus 1076 ~I~f~nVsf~Y~~---~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPE---RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CEEEEEEEECCTT---SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHH
T ss_pred eEEEEEEEEeCCC---CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHH
Confidence 4899999999864 23457999999999999999999999999999999999999884 8999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.+++++|||||+.+|+. |++|||.|+.. |.+.+.++ +.++++..++ .+-.||.+|+. ...|||
T Consensus 1150 ~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~-G~~LSg 1220 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDR-GTQLSG 1220 (1321)
T ss_dssp HHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTT-SCSSCH
T ss_pred HHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecCC-CcccCH
Confidence 26789999999999987 99999987632 22344444 5555655554 45678888863 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+||||||+||+.+...|.+.|+++.+ |+|+|+++|.++ ....||+|++|++|+++++|
T Consensus 1221 GQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-SSEEEEECSSSS--TTTTCSEEEEESSSSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC-CCEEEEeccCHH--HHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988754 799999999975 45679999999999999999
Q ss_pred CCCChhH
Q 045930 230 EAKSAPT 236 (661)
Q Consensus 230 ~~~~~~~ 236 (661)
++++.++
T Consensus 1298 th~eLl~ 1304 (1321)
T 4f4c_A 1298 THTQLMS 1304 (1321)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9876553
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.3e-37 Score=381.90 Aligned_cols=214 Identities=29% Similarity=0.426 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.|++ .+++++|+|+|+++++||.+||+||||||||||+++|.|.+++ .+|+|.+||.+.+.
T Consensus 415 ~I~~~nvsF~Y~~---~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 415 DITVENVHFTYPS---RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLE 488 (1321)
T ss_dssp CEEEEEEEECCSS---STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHH
T ss_pred cEEEEEeeeeCCC---CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccHH
Confidence 4899999999864 2356899999999999999999999999999999999999998 49999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG-------LEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSg 149 (661)
.++.+|||+|++.+++. ||+|||.|+. + ..+.++ +.++++..+ |.+-.||.+|+.+ ..|||
T Consensus 489 ~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~----~-~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe~G-~~LSG 557 (1321)
T 4f4c_A 489 FLRKNVAVVSQEPALFNC-TIEENISLGK----E-GITREE----MVAACKMANAEKFIKTLPNGYNTLVGDRG-TQLSG 557 (1321)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHHTTC----T-TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESSSS-CCCCH
T ss_pred HHhhcccccCCcceeeCC-chhHHHhhhc----c-cchHHH----HHHHHHHccchhHHHcCCCCCccEecCCC-CCCCH
Confidence 25679999999999876 9999999863 1 234443 445555444 4566788998743 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||||++++|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ ..+.||+|++|++|++++.|
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~G 634 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVG 634 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccC
Confidence 999999999999999999999999999999999999999999865 899999999974 56789999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 635 th~eL~ 640 (1321)
T 4f4c_A 635 DHRALM 640 (1321)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 976654
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2e-36 Score=372.61 Aligned_cols=214 Identities=30% Similarity=0.436 Sum_probs=177.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ++.+++|+|||+++++||++||+||||||||||+++|+|.+++. +|+|.++|.+...
T Consensus 387 ~i~~~~v~~~y~~---~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 387 NLEFKNIHFSYPS---RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CEEEEEEEECCSS---TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEEcCC---CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHH
Confidence 4789999998863 12357999999999999999999999999999999999999884 9999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG-------LEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSg 149 (661)
.++.+|||+|++.+++. ||+||+.++.. ..+.++. .+.++..+ +.+..|+.+|+ ...+|||
T Consensus 461 ~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSg 529 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEI----EKAVKEANAYDFIMKLPHQFDTLVGE-RGAQLSG 529 (1284)
T ss_dssp HHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHH----HHHHHHTTCHHHHHHSTTGGGCCCSS-SSCSSCH
T ss_pred HHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHH----HHHHHHhCcHHHHHhccccccccccC-CCCccCH
Confidence 24579999999999876 99999998732 2334433 33333332 34456777775 3457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|++ +.+ ..||+|++|++|++++.|
T Consensus 530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRL-STV-RNADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCH-HHH-TTCSEEEECSSSCCCCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998875 489999999996 345 459999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 607 ~~~~l~ 612 (1284)
T 3g5u_A 607 NHDELM 612 (1284)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 987654
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.9e-37 Score=375.79 Aligned_cols=216 Identities=30% Similarity=0.442 Sum_probs=177.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ++++++|+|+|+++++||++||+||||||||||+++|+|++++. +|+|.+||.+.+.
T Consensus 1030 ~i~~~~v~~~y~~---~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPT---RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CEEEEEEEBCCSC---GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHH
T ss_pred cEEEEEEEEECCC---CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHH
Confidence 4789999998863 22356999999999999999999999999999999999999884 9999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG-------LEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++ .||+||+.++... ...+.++. .+.++..+ +.+..||.+|+ ....|||
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSg 1174 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSG 1174 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHHHH----HHHHHHhCcHHHHHhCccccccccCC-CCCccCH
Confidence 2567999999998775 5999999875321 12334433 33333333 44556777775 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+|||||+|||+.+...+.+.|+++. +|+|||+++|++. .+ ..||+|++|++|++++.|
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998854 5899999999975 45 559999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 1252 ~~~~l~ 1257 (1284)
T 3g5u_A 1252 THQQLL 1257 (1284)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 876543
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.9e-36 Score=343.38 Aligned_cols=203 Identities=23% Similarity=0.268 Sum_probs=174.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.+. ...|+++|+++++||+++|+|||||||||||++|+|++++. +|+|.+ ...+
T Consensus 358 l~~~~l~~~~~-------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~--------~~~i 419 (607)
T 3bk7_A 358 VEYPRLVKDYG-------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW--------DLTV 419 (607)
T ss_dssp EEECCEEEECS-------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC--------CCCE
T ss_pred EEEeceEEEec-------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE--------eeEE
Confidence 67778877653 13689999999999999999999999999999999999874 788875 2459
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|+....+.+||.|++....... ....++++++++.+||.+..++.++ .|||||||||+||++|+
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~ 487 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLL 487 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHT
T ss_pred EEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHH
Confidence 99999988778899999887641100 0113568899999999988888875 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeC--CeEEEecCCCChhH
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKSAPT 236 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~ 236 (661)
.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++||+ .++..+||++++|++ |+++..|+++++.+
T Consensus 488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999999999975 599999999996 678899999999986 88888999988664
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.8e-36 Score=339.78 Aligned_cols=203 Identities=23% Similarity=0.285 Sum_probs=173.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.+. ...|+++|+++++||++||+||||||||||+++|+|+.++. +|+|.+ ...+
T Consensus 288 l~~~~l~~~~~-------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~--------~~~i 349 (538)
T 1yqt_A 288 VTYPRLVKDYG-------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW--------DLTV 349 (538)
T ss_dssp EEECCEEEEET-------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC--------CCCE
T ss_pred EEEeeEEEEEC-------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE--------CceE
Confidence 67778877653 13689999999999999999999999999999999999874 788875 2359
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|+....+.+||.|++........ . .+++++++++.+|+.+..++.++ .|||||||||+||++|+
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~ 417 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLL 417 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHT
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHH
Confidence 999999877788999998875411110 0 13467889999999988888875 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeC--CeEEEecCCCChhH
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKSAPT 236 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~ 236 (661)
.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||. .++..+||++++|++ |+++..|+++++..
T Consensus 418 ~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999999975 599999999995 688899999999986 88889999987665
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-35 Score=334.12 Aligned_cols=204 Identities=21% Similarity=0.299 Sum_probs=170.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|++..+. ...|+++|+++++||+++|+||||||||||+++|+|++++. +|+|.+++ +.+
T Consensus 270 l~~~~l~~~~~-------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~-------~~i 332 (538)
T 3ozx_A 270 MKWTKIIKKLG-------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK-------QIL 332 (538)
T ss_dssp EEECCEEEEET-------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC-------CCE
T ss_pred EEEcceEEEEC-------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-------eee
Confidence 56667776553 23578889999999999999999999999999999999884 89998764 358
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|+......+||+|++.+..... ... ....++++++.+||.+..++.++ .|||||||||+||++|+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHH
Confidence 99999877667899999998742111 101 12457889999999998888875 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeC--CeEEEecCCCChh
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKSAP 235 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~ 235 (661)
.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++||. .++..+||+|++|++ |.....+++.+..
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999999999999986 489999999996 688899999999986 5566666665543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=328.24 Aligned_cols=192 Identities=23% Similarity=0.326 Sum_probs=163.7
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCC
Q 045930 21 RRLLNGLTGYAEPA-----RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 21 ~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~l 95 (661)
+.+++|+|+++++| |+++|+||||||||||+++|+|++++. +|+. .....++|++|+.......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~--------~~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD--------IPKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC--------CCSCCEEEECSSCCCCCCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC--------ccCCcEEEecccccccCCc
Confidence 45789999999999 789999999999999999999999884 6752 1234699999997766677
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 045930 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175 (661)
Q Consensus 96 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts 175 (661)
||+|++.... + ..... .+.++++++.+||.+.+|+.++ .|||||||||+||++|+.+|++|||||||+
T Consensus 429 tv~e~~~~~~--~--~~~~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--R--GQFLN---PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--S--STTTS---HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--h--ccccc---HHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875432 1 11111 2457789999999999998875 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeC--CeEEEecCCCChhH
Q 045930 176 GLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKSAPT 236 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~ 236 (661)
|||+.++..+++.|+++++ .|+|||++|||. .++..+||||++|++ |+++..|+++++..
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999999999999975 599999999996 688999999999986 99999999988764
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.1e-34 Score=334.49 Aligned_cols=207 Identities=27% Similarity=0.345 Sum_probs=139.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCc----eeeEEEECCee
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLL---------------------DALAGRLSGNVV----MTGNVLLNGKK 74 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------------------~~LaG~~~~~~~----~~G~i~~~g~~ 74 (661)
.+.+|+|||++|++||++||+||||||||||+ ++++|+..++.. ..|.|.++|..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45789999999999999999999999999998 777777665311 14667777764
Q ss_pred ccc-ccCeEEEEecCCC-------------------CCCCCCHHHHHHHHHhcCCCCCCCH------HHHHHHHHHHHHH
Q 045930 75 RRL-DYGGVAYVTQENI-------------------MLGTLTVRETIAYSAHLRLPSNMNN------EEITDVIEEAITE 128 (661)
Q Consensus 75 ~~~-~~~~i~yv~Q~~~-------------------l~~~lTV~E~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~ 128 (661)
... .++.+++|+|... .++.+||+||+.+...+........ ++..++ .++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHH-HHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHH
Confidence 321 2334555555432 2467899999987543221110000 011111 245888
Q ss_pred cCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 045930 129 MGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTRPQ--LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205 (661)
Q Consensus 129 lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~--lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq 205 (661)
+||.+. .|+.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+++||
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999865 677775 599999999999999999998 999999999999999999999999998889999999999
Q ss_pred CchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 206 PSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 206 ~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
+ .. ...||++++| ++|++++.|++++.
T Consensus 264 ~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 264 E-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp H-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred H-HH-HhhCCEEEEecccccccCCEEEEecCHHHH
Confidence 6 34 4569999999 89999999987654
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.4e-34 Score=330.58 Aligned_cols=192 Identities=26% Similarity=0.372 Sum_probs=156.2
Q ss_pred EEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEE---------EECCeecc
Q 045930 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV---------LLNGKKRR 76 (661)
Q Consensus 6 ~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i---------~~~g~~~~ 76 (661)
+|+++.+. ....+|+|+| ++++||+++|+||||||||||||+|+|+++++ +|++ .++|.+..
T Consensus 95 ~~ls~~yg-----~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~ 165 (607)
T 3bk7_A 95 EDCVHRYG-----VNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQ 165 (607)
T ss_dssp GSEEEECS-----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHH
T ss_pred CCeEEEEC-----CCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehh
Confidence 45566553 1224899999 99999999999999999999999999999874 6764 34564321
Q ss_pred -------cccCeEEEEecCCCCCC---CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccc
Q 045930 77 -------LDYGGVAYVTQENIMLG---TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146 (661)
Q Consensus 77 -------~~~~~i~yv~Q~~~l~~---~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 146 (661)
.....+++++|.....+ ..||.|++... .. +++++++++.+||++..|+.++ +
T Consensus 166 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------~~-----~~~~~~~L~~lgL~~~~~~~~~-----~ 228 (607)
T 3bk7_A 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------DE-----VGKFEEVVKELELENVLDRELH-----Q 228 (607)
T ss_dssp HHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-------CC-----SSCHHHHHHHTTCTTGGGSBGG-----G
T ss_pred hhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-------HH-----HHHHHHHHHHcCCCchhCCChh-----h
Confidence 11245789998743322 23999998631 10 2357889999999999999875 5
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||+++||+ ..+..++|+|++|+++.
T Consensus 229 LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 999999999999999999999999999999999999999999999988899999999995 57888999999998654
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-34 Score=326.78 Aligned_cols=191 Identities=24% Similarity=0.329 Sum_probs=155.9
Q ss_pred EEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEE---------EECCeecc-
Q 045930 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV---------LLNGKKRR- 76 (661)
Q Consensus 7 ~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i---------~~~g~~~~- 76 (661)
||++.++. ...+|+|+| ++++||+++|+||||||||||||+|+|.+++. +|++ .++|.+..
T Consensus 26 ~ls~~yg~-----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~ 96 (538)
T 1yqt_A 26 DCVHRYGV-----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQN 96 (538)
T ss_dssp CEEEECST-----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHH
T ss_pred CcEEEECC-----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCccHHH
Confidence 56665531 224899999 99999999999999999999999999998774 6764 34564321
Q ss_pred ------cccCeEEEEecCCCCCCC---CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccccc
Q 045930 77 ------LDYGGVAYVTQENIMLGT---LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147 (661)
Q Consensus 77 ------~~~~~i~yv~Q~~~l~~~---lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 147 (661)
.....+++++|+....+. .||.|++.... ..++++++++.+||++..++.++ +|
T Consensus 97 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~-----~L 159 (538)
T 1yqt_A 97 YFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQ-----HL 159 (538)
T ss_dssp HHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGG-----GC
T ss_pred HHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChh-----hC
Confidence 112458899997544332 38999875310 12357889999999988888875 59
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
||||||||+||+||+.+|++|||||||++||+.++..+++.|++++++|.|||+++|+. .++..+||+|++|++|.
T Consensus 160 SgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 160 SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCcc
Confidence 99999999999999999999999999999999999999999999988899999999995 58889999999998653
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.5e-33 Score=331.07 Aligned_cols=195 Identities=26% Similarity=0.341 Sum_probs=161.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|...|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+| |+| +|.+... ...+
T Consensus 436 L~~~~ls~~yg------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~~~~ 497 (986)
T 2iw3_A 436 LCNCEFSLAYG------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-ECRT 497 (986)
T ss_dssp EEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-TSCE
T ss_pred eEEeeEEEEEC------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-ceeE
Confidence 55567777763 2579999999999999999999999999999999995 111 3332211 1247
Q ss_pred EEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHHH
Q 045930 83 AYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 83 ~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
+|++|+. .+++.+||.|++.+ ... .. +++++++++.+||. +..++.++ +|||||||||+||++
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArA 562 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARA 562 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHH
T ss_pred EEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHH
Confidence 8999984 67889999999975 111 11 46788999999995 67888875 599999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE-EecCCCCh
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAKSA 234 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v-~~G~~~~~ 234 (661)
|+.+|++|||||||+|||+.++..+.+.|++ .|+|||+++|+. .++.++||++++|++|+++ +.|+.++.
T Consensus 563 L~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 9999999999999999999999999999988 589999999995 6788999999999999997 68887554
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.8e-33 Score=330.66 Aligned_cols=207 Identities=26% Similarity=0.372 Sum_probs=163.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.+++ ..+.+|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|. ..
T Consensus 671 mL~v~nLs~~Y~g----~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 671 IVKVTNMEFQYPG----TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEECCTT----CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred eEEEEeeEEEeCC----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 3789999987642 1256999999999999999999999999999999999999884 899999863 24
Q ss_pred EEEEecCCCC----CCCCCHHHHHHHHHhcC------------CC-----------------------------------
Q 045930 82 VAYVTQENIM----LGTLTVRETIAYSAHLR------------LP----------------------------------- 110 (661)
Q Consensus 82 i~yv~Q~~~l----~~~lTV~E~l~~~~~l~------------~~----------------------------------- 110 (661)
++|++|++.. ....|++|++.+..... +.
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8999997531 23468888876532100 00
Q ss_pred -----------------CCCC----------------------------------HHHHHHHHHHHHHHcCCCc-c-ccc
Q 045930 111 -----------------SNMN----------------------------------NEEITDVIEEAITEMGLED-C-ADR 137 (661)
Q Consensus 111 -----------------~~~~----------------------------------~~~~~~~v~~~l~~lgL~~-~-~d~ 137 (661)
..++ +...+++++++++.+||.+ . .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 0000 0001356888999999975 3 566
Q ss_pred cccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 138 ~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
.++ +|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||++ +++..+||++
T Consensus 898 ~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrV 968 (986)
T 2iw3_A 898 RIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEV 968 (986)
T ss_dssp CGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEE
T ss_pred Ccc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEE
Confidence 664 59999999999999999999999999999999999999998888765 67999999995 5788899999
Q ss_pred EEEeCCeEEEecC
Q 045930 218 FLLSGGETVYFGE 230 (661)
Q Consensus 218 ~lL~~G~~v~~G~ 230 (661)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987775
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=1.3e-32 Score=319.46 Aligned_cols=198 Identities=25% Similarity=0.341 Sum_probs=147.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-----CC-------------CCCCceeeEEEECCeecccc----
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG-----RL-------------SGNVVMTGNVLLNGKKRRLD---- 78 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG-----~~-------------~~~~~~~G~i~~~g~~~~~~---- 78 (661)
+.+|+|||++|++||++||+||||||||||+++|.+ .+ .+-....|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 458999999999999999999999999999987641 00 00011245677776543110
Q ss_pred ------------------------------------------cCeEEEEecCCCCCC-----------------------
Q 045930 79 ------------------------------------------YGGVAYVTQENIMLG----------------------- 93 (661)
Q Consensus 79 ------------------------------------------~~~i~yv~Q~~~l~~----------------------- 93 (661)
....|++.|+..+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 011244444433322
Q ss_pred ---------CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhh
Q 045930 94 ---------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILT 163 (661)
Q Consensus 94 ---------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~ 163 (661)
.+||.||+.+.... . ..+++.+.++.+||.+ ..++.++ +|||||||||+|||||+.
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccCCch-----hCCHHHHHHHHHHHHHhh
Confidence 47999999875321 1 2345677888999964 4566654 699999999999999999
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 164 RP---QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 164 ~P---~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
+| ++|||||||+|||+.++..+++.|++++++|+|||+++||+. . ...||+|++| ++|++++.|+++++
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHH
Confidence 87 599999999999999999999999999988999999999963 4 4679999999 89999999997654
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-31 Score=304.19 Aligned_cols=188 Identities=24% Similarity=0.304 Sum_probs=146.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEE-----------ECCeeccc-----ccC--eE
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL-----------LNGKKRRL-----DYG--GV 82 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~-----------~~g~~~~~-----~~~--~i 82 (661)
...|++++ .+++||++||+||||||||||||+|+|+++|+ +|+|. +.|..... ..+ ..
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 166 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKA 166 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCC
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhh
Confidence 45677777 58999999999999999999999999999884 67762 23322100 001 12
Q ss_pred EEEecCCCC------CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 83 AYVTQENIM------LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 83 ~yv~Q~~~l------~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.+.+|.... -+..++.+++.... . +.+++++++++.+||.+..|+.++ +|||||||||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~ 231 (608)
T 3j16_B 167 IIKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFA 231 (608)
T ss_dssp EEECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHH
T ss_pred hhchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHH
Confidence 334443211 12235666554321 1 113568899999999999999886 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+. .++..++|+|++|++|..++.
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTEE
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCccccc
Confidence 99999999999999999999999999999999999988899999999996 689999999999998775553
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.6e-31 Score=299.76 Aligned_cols=182 Identities=24% Similarity=0.298 Sum_probs=143.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEE-----------EECCeeccc-------ccCeEEE
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV-----------LLNGKKRRL-------DYGGVAY 84 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i-----------~~~g~~~~~-------~~~~i~y 84 (661)
-|.++.. .++||++||+||||||||||||+|+|.++|+ +|+| .++|++... ....+..
T Consensus 15 ~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~ 90 (538)
T 3ozx_A 15 KLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVH 90 (538)
T ss_dssp EEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEE
T ss_pred eecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhh
Confidence 3444443 6799999999999999999999999999884 7877 466654310 1123444
Q ss_pred EecCCCC---CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 85 VTQENIM---LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 85 v~Q~~~l---~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
..|.... +...||+|++.... .+++++++++.+|+.+..|+.++ +|||||||||+||+||
T Consensus 91 ~~~~~~~~~~~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL 153 (538)
T 3ozx_A 91 KIQYVEYASKFLKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASL 153 (538)
T ss_dssp ECSCTTGGGTTCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 5554322 12348888664210 12357789999999999998875 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+. .++..+||+|++|++|..++
T Consensus 154 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 154 LREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence 999999999999999999999999999999976 99999999996 68999999999998765443
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=2.9e-29 Score=296.19 Aligned_cols=199 Identities=25% Similarity=0.334 Sum_probs=151.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCC---Ccee------eEEEECCeeccc-----
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLL---------DALAGRLSGN---VVMT------GNVLLNGKKRRL----- 77 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------~~LaG~~~~~---~~~~------G~i~~~g~~~~~----- 77 (661)
...|+|||+++++|++++|+||||||||||+ +.+.+..... .... +.+.+++.+...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 4444432110 0112 334444432100
Q ss_pred -----------------------------------------ccCeEEEEecCCCCCC-----------------------
Q 045930 78 -----------------------------------------DYGGVAYVTQENIMLG----------------------- 93 (661)
Q Consensus 78 -----------------------------------------~~~~i~yv~Q~~~l~~----------------------- 93 (661)
..+..|++.++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0123578888776665
Q ss_pred ---------CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhh
Q 045930 94 ---------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILT 163 (661)
Q Consensus 94 ---------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~ 163 (661)
.+||.|++.|.... ....++.++|+.+||... .++.+ ..|||||||||.||+||+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCCc-----cCCCHHHHHHHHHHHHHhh
Confidence 36888888875321 123567889999999753 34444 4699999999999999998
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 164 RP---QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 164 ~P---~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 75 79999999999999999999999999998899999999996 444 569999999 89999999998764
Q ss_pred h
Q 045930 235 P 235 (661)
Q Consensus 235 ~ 235 (661)
.
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=9.8e-30 Score=298.30 Aligned_cols=197 Identities=24% Similarity=0.340 Sum_probs=151.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cC----C------CCCC-ceee------EEEECCeecccc-----
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-GR----L------SGNV-VMTG------NVLLNGKKRRLD----- 78 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G~----~------~~~~-~~~G------~i~~~g~~~~~~----- 78 (661)
..|+|||++|++||++||+|+||||||||+++|. |. + ++.. ...| .|.++|.+....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 3699999999999999999999999999999853 21 1 1111 2234 478887653100
Q ss_pred -------------------cCeEEEEecCCCCC----------------------C------------------------
Q 045930 79 -------------------YGGVAYVTQENIML----------------------G------------------------ 93 (661)
Q Consensus 79 -------------------~~~i~yv~Q~~~l~----------------------~------------------------ 93 (661)
.+..||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 12246666643221 1
Q ss_pred --------CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhC
Q 045930 94 --------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTR 164 (661)
Q Consensus 94 --------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~ 164 (661)
.+||.|++.|... . .. .+++.++++.+||.. ..++.++ .|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcC
Confidence 4688888876432 1 11 234578999999987 6677664 5999999999999999986
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 165 P---QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 165 P---~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
| ++|||||||+|||+.++..+++.|++++++|.|||+++|++ +++ ..||+|++| ++|++++.|+++++
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEV 940 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECSSSTTSCCSEEEEESHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHH
Confidence 5 99999999999999999999999999998899999999996 444 689999999 78999999987643
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.6e-29 Score=296.10 Aligned_cols=195 Identities=29% Similarity=0.350 Sum_probs=147.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC-------C---C------------Cceee-------EEEECC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDA-LAGRLS-------G---N------------VVMTG-------NVLLNG 72 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~-LaG~~~-------~---~------------~~~~G-------~i~~~g 72 (661)
+|+|||++|++||++||+|+||||||||++. |+|.+. + . ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 775431 1 0 01356 688888
Q ss_pred eecccc-c---------------------------------------------CeEEEEecCCCCCC-------------
Q 045930 73 KKRRLD-Y---------------------------------------------GGVAYVTQENIMLG------------- 93 (661)
Q Consensus 73 ~~~~~~-~---------------------------------------------~~i~yv~Q~~~l~~------------- 93 (661)
.+.... + +..|++..+..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 653210 0 01122222222222
Q ss_pred -------------------CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHH
Q 045930 94 -------------------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 94 -------------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerq 153 (661)
.+||.|++.|... ....+++.++++.+||... .++.++ .|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---------~~~~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFAD---------ESAIFRALDTLREVGLGYLRLGQPAT-----ELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---------SHHHHHHHHHHHHTTCTTSBTTCCGG-----GCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---------chHHHHHHHHHHHcCCCcccccCCcc-----cCCHHHHH
Confidence 2455555544211 1123468899999999873 466654 69999999
Q ss_pred HHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCe
Q 045930 154 RLSIALEILTR---PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGE 224 (661)
Q Consensus 154 RvsIa~aL~~~---P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~ 224 (661)
||.||++|+.+ |++|||||||+|||+.+...+.+.|++++++|.|||+++|++ +++ +.||+|++| ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 799999999999999999999999999998899999999996 466 889999999 7999
Q ss_pred EEEecCCCC
Q 045930 225 TVYFGEAKS 233 (661)
Q Consensus 225 ~v~~G~~~~ 233 (661)
+++.|++++
T Consensus 816 Iv~~g~~~e 824 (842)
T 2vf7_A 816 LVAQGTPAE 824 (842)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 999998754
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=4.3e-29 Score=293.89 Aligned_cols=197 Identities=24% Similarity=0.338 Sum_probs=148.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCCC-----C-C-ceee------EEEECCeecccc-----
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-G----RLSG-----N-V-VMTG------NVLLNGKKRRLD----- 78 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G----~~~~-----~-~-~~~G------~i~~~g~~~~~~----- 78 (661)
.+|+|||++|++||++||+|+||||||||+++|. | .+.+ + . ...| .|.+++.+....
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~p 735 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNP 735 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccch
Confidence 3699999999999999999999999999999853 2 2211 1 0 1123 345555442100
Q ss_pred -------------------cCeEEEEecCCCC----------------------CC------------------------
Q 045930 79 -------------------YGGVAYVTQENIM----------------------LG------------------------ 93 (661)
Q Consensus 79 -------------------~~~i~yv~Q~~~l----------------------~~------------------------ 93 (661)
.+..||++|...+ ++
T Consensus 736 aty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 815 (993)
T 2ygr_A 736 ATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYK 815 (993)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhcc
Confidence 0224566664221 11
Q ss_pred --------CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhC
Q 045930 94 --------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTR 164 (661)
Q Consensus 94 --------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~ 164 (661)
.+||.|++.|.... .. .+++.++++.+||.. ..++.++ .|||||||||+||++|+.+
T Consensus 816 g~si~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~lgL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~ 881 (993)
T 2ygr_A 816 GKTVSEVLDMSIEEAAEFFEPI-------AG--VHRYLRTLVDVGLGYVRLGQPAP-----TLSGGEAQRVKLASELQKR 881 (993)
T ss_dssp TBCHHHHHSSBHHHHHHHSTTC-------HH--HHHHHHHHHHTTGGGSBTTCCGG-----GSCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHhhccHHHHHHHhhcc-------hH--HHHHHHHHHHcCCCcccccCccc-----cCCHHHHHHHHHHHHHHhC
Confidence 36788887764321 11 234578999999987 5666664 5999999999999999986
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 165 P---QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 165 P---~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ +++ +.||+|++| ++|++++.|+++++
T Consensus 882 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el 958 (993)
T 2ygr_A 882 STGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL-DVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDV 958 (993)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSTTSCSEEEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEECCCcCCCCCEEEEecCHHHH
Confidence 5 99999999999999999999999999998899999999996 444 789999999 68999999987654
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=7.5e-28 Score=263.37 Aligned_cols=204 Identities=22% Similarity=0.263 Sum_probs=146.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------Ccee
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-----------------------------------VVMT 65 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-----------------------------------~~~~ 65 (661)
..+++++|+++.+| +++|+|||||||||||++|+++..+. ..-.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35799999999999 99999999999999999998766421 0126
Q ss_pred eEEEECCeeccc------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcC-----------------------CCCCC---
Q 045930 66 GNVLLNGKKRRL------DYGGVAYVTQENIMLGTLTVRETIAYSAHLR-----------------------LPSNM--- 113 (661)
Q Consensus 66 G~i~~~g~~~~~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~-----------------------~~~~~--- 113 (661)
|++.+||++... ....+++++|++.++.. +..+...|.-... +....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999987542 12348999998766543 4544444322110 00000
Q ss_pred -------------------------------CHHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 045930 114 -------------------------------NNEEITDVIEEAITEMGLEDCA----------------DR---LIGN-- 141 (661)
Q Consensus 114 -------------------------------~~~~~~~~v~~~l~~lgL~~~~----------------d~---~vg~-- 141 (661)
..+...+.+++.++.+++.+.. ++ .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0011223455666777764310 00 1110
Q ss_pred ----ccccc-cCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 045930 142 ----WHWRG-ISGGEKKRLSIALEILTRP--QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF 214 (661)
Q Consensus 142 ----~~~~~-LSgGerqRvsIa~aL~~~P--~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~ 214 (661)
..++. +|||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++ ++.+.|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 01122 6999999999999999999 9999999999999999999999999998 589999999996 466889
Q ss_pred CeEEEE----eCCeEEEec
Q 045930 215 DDLFLL----SGGETVYFG 229 (661)
Q Consensus 215 D~v~lL----~~G~~v~~G 229 (661)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987654
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-30 Score=288.54 Aligned_cols=186 Identities=13% Similarity=0.116 Sum_probs=147.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee-E-EEECCeecccccCeEEEEecCCC---CCCCCCHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG-N-VLLNGKKRRLDYGGVAYVTQENI---MLGTLTVR 98 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~-i~~~g~~~~~~~~~i~yv~Q~~~---l~~~lTV~ 98 (661)
+.++|+++++||+++|+||||||||||+|+|+|+..+ .+| + |.++|.. ++.++|++|+.. +.+.+||+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCCc----cCCeeeeccchhhcccccccchh
Confidence 3578999999999999999999999999999999876 489 8 9999832 466899999974 45668999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH--HhhCCCE----EEEeC
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE--ILTRPQL----LFLDE 172 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a--L~~~P~l----llLDE 172 (661)
||+ |....... .. .++++.++++.+||++..+ . .+|||||||||+||++ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~--~~---~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSG--AT---LLHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSS--CC---SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccC--cc---hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 65432111 10 1234566788889987765 2 4699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch-----HHHhhcCe-----EEEEe-CCeEEEecCCCCh
Q 045930 173 -PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS-----EVFALFDD-----LFLLS-GGETVYFGEAKSA 234 (661)
Q Consensus 173 -PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~-----~i~~~~D~-----v~lL~-~G~~v~~G~~~~~ 234 (661)
||+|||+. ...+.+.+++ .|.|+|+++|+..+ ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 4444444433 37899999999741 56689999 99999 99999 8887543
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=3.9e-25 Score=238.53 Aligned_cols=82 Identities=32% Similarity=0.479 Sum_probs=75.8
Q ss_pred ccccCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 144 WRGISGGEKKRLSIALEIL------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ +..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~--~~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR--EFSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH--HHHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch--HHHHhCCEE
Confidence 4579999999999999999 69999999999999999999999999999988899999999996 347889999
Q ss_pred EEEeCCeEEE
Q 045930 218 FLLSGGETVY 227 (661)
Q Consensus 218 ~lL~~G~~v~ 227 (661)
++|++|+++.
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999874
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=1.7e-24 Score=229.51 Aligned_cols=86 Identities=27% Similarity=0.263 Sum_probs=72.9
Q ss_pred cccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE--E
Q 045930 145 RGISGGEKKRLSIALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL--F 218 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v--~ 218 (661)
..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|++++ +|.+||+++|++ ++.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEEEE
Confidence 579999999999999997 5789999999999999999999999999985 489999999995 477899987 7
Q ss_pred EEeCCe-EEEecCCCC
Q 045930 219 LLSGGE-TVYFGEAKS 233 (661)
Q Consensus 219 lL~~G~-~v~~G~~~~ 233 (661)
+|.+|+ .+.....++
T Consensus 295 ~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 295 TMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EESSSCEEEEECCC--
T ss_pred EEeCCEEEEEEEEcch
Confidence 787775 444455444
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=5.6e-28 Score=240.70 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=99.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC--eecccccCeEEEEecCCCCCCCCCH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG--KKRRLDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g--~~~~~~~~~i~yv~Q~~~l~~~lTV 97 (661)
.+.+|+|+ ++||+++|+|||||||||||++|+|+ ++ .+|+|.... .+....++.+||++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p---~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL---QSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH---HTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC---cCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 35799996 89999999999999999999999999 76 366663210 11112346799999975
Q ss_pred HHHH-HHHH----hcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 045930 98 RETI-AYSA----HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172 (661)
Q Consensus 98 ~E~l-~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDE 172 (661)
+||+ .+.. .+. .... .++++++++. |+ ||||||+||++|+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHT--TTSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEeC
Confidence 4444 2211 111 0001 1235555554 32 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 173 PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888899999998 6689999 999963
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=3.8e-25 Score=213.17 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=102.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCC-CCCCCHHHHHHHH
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIM-LGTLTVRETIAYS 104 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l-~~~lTV~E~l~~~ 104 (661)
|||+++++||+++|+||||||||||++++.+-. ..+++.. ..++++|++.- ...-++.+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~---------~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~--- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT---------EVISSDF------CRGLMSDDENDQTVTGAAFDVL--- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG---------GEEEHHH------HHHHHCSSTTCGGGHHHHHHHH---
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC---------eEEccHH------HHHHhcCcccchhhHHHHHHHH---
Confidence 689999999999999999999999999965311 1111110 12556665321 0000111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 045930 105 AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA---- 180 (661)
Q Consensus 105 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~---- 180 (661)
.... +.....|.....|.. ...|||||||++||++++.+|++|+|||||+|||+.
T Consensus 63 --------------~~~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 63 --------------HYIV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp --------------HHHH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred --------------HHHH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1111 122234555444433 236999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 045930 181 ------------AAFFVVKILKNIAHDGRTIISSIHQPSSEVF 211 (661)
Q Consensus 181 ------------~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~ 211 (661)
.+..+.+.|++++++|.|+|+++|++ +++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EEVE 163 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HHHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HHhh
Confidence 66889999999988899999999996 3443
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=1.3e-26 Score=252.71 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=138.0
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccC
Q 045930 21 RRLLNGLTGYAEPAR--------------------ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge--------------------~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~ 80 (661)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t--~- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT--M- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC------C-
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc--e-
Confidence 468999999999999 99999999999999999999998874 899999886542 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHH--HHHHHHHH
Q 045930 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG--EKKRLSIA 158 (661)
Q Consensus 81 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgG--erqRvsIa 158 (661)
.+|++|++ .++.+|+.|++.+.. + +.++++.++.+++.+... .+ .+||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~-~~------~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDF-FI------IISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSE-EE------EEESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCC-eE------EeCCCCccHHHHHHH
Confidence 27899985 577889998875431 0 124788899999876532 22 29999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hcC----CEEEEEecCCch-HHHhhcCeEE
Q 045930 159 LEILT----------RPQLLFLDEPTSGLDSAAAFFVVKILKNIA-----HDG----RTIISSIHQPSS-EVFALFDDLF 218 (661)
Q Consensus 159 ~aL~~----------~P~lllLDEPtsGLD~~~~~~i~~~L~~la-----~~g----~tvi~s~Hq~~~-~i~~~~D~v~ 218 (661)
++|+. +|++++|||||+|||+.++.++.+.|+++. +.| .+|++++|+... .+.+++|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999985 223 678899998642 2777777764
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=1.3e-23 Score=204.07 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=103.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM 113 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 113 (661)
.++|+||||||||||+++|+|.+. +...|... .... ..++.+||++|+. ++.+++ + +.+. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETT----C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhhc----C
Confidence 589999999999999999999874 33445322 1111 2345789999975 222332 1 1110 0
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH
Q 045930 114 NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE-----ILTRPQLLFLDE--PTSGLDSAAAFFVV 186 (661)
Q Consensus 114 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a-----L~~~P~lllLDE--PtsGLD~~~~~~i~ 186 (661)
. -++..++.+ ..||||||||++||++ ++.+|++++||| ||++||+.....+.
T Consensus 65 ~----------------~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 65 T----------------SKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp C----------------CSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred C----------------ccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 0 002334444 4699999999999996 999999999999 99999999999888
Q ss_pred HHHHHHHhcCCEEEEEec--CCchHHHhhcCeEEEEeCCeEEE
Q 045930 187 KILKNIAHDGRTIISSIH--QPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 187 ~~L~~la~~g~tvi~s~H--q~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
+.+++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 88865 4677888886 234678888888 5566654
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=1.2e-26 Score=230.29 Aligned_cols=180 Identities=16% Similarity=0.143 Sum_probs=124.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-ccccCeEEEEecCCCCCCCCCHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RLDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
.+.+++| .++++||+++|+||||||||||+|+|+|+++ .+...+ .+.+.+. ...++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~--~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSV--SATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECC--CEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcc--cccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 3568888 6999999999999999999999999999985 222222 2222221 12245689999998888888888
Q ss_pred HHHHHHHhcCC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEE
Q 045930 99 ETIAYSAHLRL---PSNMNNEEITDVIEEA------ITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLF 169 (661)
Q Consensus 99 E~l~~~~~l~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lll 169 (661)
|++........ ..+.++++.++++++. ++.+|+.+.+++.++ .|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----AVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----SEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----cEE-----------EEEECCCHHH
Confidence 77642211100 0123345556666665 666677666666653 477 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 170 LDEPTSGL----DSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 170 LDEPtsGL----D~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
|||||+|+ |+..+.++.+.++++++ .|.|+|+++||+ +++..+||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999985 489999999996 68999999999985
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=1.1e-25 Score=236.07 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=120.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH-
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE- 99 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E- 99 (661)
+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|+| ++|++|++.++.. |++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I-------------~~~v~q~~~lf~~-ti~~~ 172 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV-------------LSFANHKSHFWLA-SLADT 172 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE-------------ECGGGTTSGGGGG-GGTTC
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE-------------EEEecCccccccc-cHHHH
Confidence 45899999999999999999999999999999999986 4766 3567888877764 7776
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
|+.+.. ..+. .+.+.++.+ |.+..| | ..|||||||| ||||+.+|+||| |++||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 776531 1111 344555554 444444 3 4699999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHHh
Q 045930 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240 (661)
Q Consensus 180 ~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~ 240 (661)
.+...+.. .+|++. ..+.+|+| +|++|++++.|+.++...+|..
T Consensus 227 ~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp TTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 99888752 178863 46789999 9999999999998776555554
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.86 E-value=2.4e-23 Score=218.68 Aligned_cols=172 Identities=19% Similarity=0.160 Sum_probs=133.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---------c--cCeEEEEecCCC-C
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---------D--YGGVAYVTQENI-M 91 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---------~--~~~i~yv~Q~~~-l 91 (661)
++++|+.+++|++++|+||||||||||++.|+|++++. .|+|.++|.+... . +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 35789999999999999999999999999999998763 7999999876421 1 236999999988 8
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCC--EEE
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ--LLF 169 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~--lll 169 (661)
++.+||+|++.++.... .. ..+++.+|+.+..+++++ +|| |||++||++|+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEE
Confidence 89999999998864211 10 134567788777777664 599 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc--------hHHHhhcCeEEEEeCCeE
Q 045930 170 LDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPS--------SEVFALFDDLFLLSGGET 225 (661)
Q Consensus 170 LDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~--------~~i~~~~D~v~lL~~G~~ 225 (661)
|| ||+|||+.+. ++++.+ .|.|+|++||... +.+....+.|..+..|+.
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99 9999998754 355654 4899999999421 233455678888888864
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=2.8e-23 Score=214.86 Aligned_cols=145 Identities=22% Similarity=0.245 Sum_probs=97.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM 113 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 113 (661)
.++|+||||||||||+|+|+|...+ .+|+|.++|++.. ...+.++|++|++.+++.+||.||+.|+..... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~---~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS---RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--EN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HH
Confidence 4799999999999999999999877 3899999998643 234679999999999999999999988754321 11
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 045930 114 NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193 (661)
Q Consensus 114 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la 193 (661)
. .+.+.+.++ .+..+.+.+ +||||||||++|||+++. ++++||||.|||+.. .+.++.+.
T Consensus 79 ~----~~~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 C----WEPIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp C----SHHHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred H----HHHHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 1 122333333 344555553 599999999999999875 999999999999987 56667776
Q ss_pred hcCCEEEEEecCC
Q 045930 194 HDGRTIISSIHQP 206 (661)
Q Consensus 194 ~~g~tvi~s~Hq~ 206 (661)
+. .+||+++|..
T Consensus 139 ~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 KV-VNIIPVIAKA 150 (270)
T ss_dssp TT-SEEEEEETTG
T ss_pred hc-CcEEEEEecc
Confidence 66 8999999983
No 76
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=7.2e-20 Score=195.37 Aligned_cols=79 Identities=29% Similarity=0.383 Sum_probs=70.9
Q ss_pred ccccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 144 WRGISGGEKK------RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 144 ~~~LSgGerq------RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||+++|++ ++.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4579999999 67778888889999999999999999999999999999988889999999994 578999999
Q ss_pred EEEe--CCe
Q 045930 218 FLLS--GGE 224 (661)
Q Consensus 218 ~lL~--~G~ 224 (661)
++|. +|.
T Consensus 324 ~~l~~~~g~ 332 (339)
T 3qkt_A 324 IRISLENGS 332 (339)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCc
Confidence 9996 554
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.83 E-value=2.2e-22 Score=215.70 Aligned_cols=171 Identities=19% Similarity=0.177 Sum_probs=134.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----------ccCeEEEEecCCC-CC
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----------DYGGVAYVTQENI-ML 92 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----------~~~~i~yv~Q~~~-l~ 92 (661)
+++|+++++|++++|+||||||||||++.|+|++++. .|+|.++|.+... .+..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999998763 7999999876421 1246999999988 88
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCC--EEEE
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ--LLFL 170 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~--lllL 170 (661)
+.+||+|++.++.... .. ..+++.+|+.+..+++++ +|| |||+.||++++.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEE
Confidence 9999999999864311 10 134566788777776664 599 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCC--------chHHHhhcCeEEEEeCCeE
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQP--------SSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~--------~~~i~~~~D~v~lL~~G~~ 225 (661)
| ||+|||+.+. ++++.+ .|.|+|++||.. .+......+.|..+..|+.
T Consensus 285 D-pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 9999998765 345554 489999999942 1234456678888888764
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.83 E-value=3.7e-20 Score=198.58 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=75.3
Q ss_pred cc-ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh
Q 045930 144 WR-GISGGEKKRLSIALEIL---------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 144 ~~-~LSgGerqRvsIa~aL~---------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~ 213 (661)
++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. . . .
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~ 333 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---G 333 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---T
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---c
Confidence 45 69999999999999999 8999999999999999999999999998874 699999994 3 3 8
Q ss_pred cCeEEEEeCCeEEEecCCCCh
Q 045930 214 FDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 214 ~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+|++++|++|+++..|+++++
T Consensus 334 ~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 334 AALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp CSEEEEEETTEEEECCCTTTS
T ss_pred CCEEEEEECCEEEecCCHHHH
Confidence 999999999999999998764
No 79
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.83 E-value=2.9e-24 Score=236.52 Aligned_cols=173 Identities=16% Similarity=0.110 Sum_probs=139.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe---ecc----------cccCeEEEEec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---KRR----------LDYGGVAYVTQ 87 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~---~~~----------~~~~~i~yv~Q 87 (661)
.++|+++ +.+.+||+++|+|||||||||||++|+|..+++ .|.|.++|+ +.. ..++.++|++|
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 5699999 999999999999999999999999999998874 899999997 321 12467999999
Q ss_pred C-CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCC
Q 045930 88 E-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ 166 (661)
Q Consensus 88 ~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~ 166 (661)
+ +..++.+||.+|+.+.+...... .+ ......|. ...+|+|| ||++|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld~------l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMDS------LTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEEC------HHHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHHh------HHHHHHHH-HHHHHH---hCCCc
Confidence 5 56778889999998865431000 00 01111222 24599999 999999 88898
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh---c-CC-----EEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 167 LLFLDEPTSGLDSAAAFFVVKILKNIAH---D-GR-----TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 167 lllLDEPtsGLD~~~~~~i~~~L~~la~---~-g~-----tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+ |+|||+.....+.+.++++.+ + |+ ||++++||.+ ..++|++++|.+|+++..|+.+
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~ 340 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLA 340 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHH
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHH
Confidence 8 999999999999999999976 3 64 9999999975 5789999999999999998754
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.82 E-value=8.8e-22 Score=209.41 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=106.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-c--ccCeEEEEecCCCCCCCCCHHH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-L--DYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~--~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
+++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|.++|.+.. . .++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999874 899999886411 0 112233321
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 180 ~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
.++.+.|+.+...+.|+|+++|+++ ..+.+||+++|.+|+
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2356777777654568999999974 778899999998875
No 81
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.80 E-value=4.1e-21 Score=200.65 Aligned_cols=183 Identities=16% Similarity=0.135 Sum_probs=119.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee-EEEECCeecc--cccCeEEEEecCCCCCCCCCH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG-NVLLNGKKRR--LDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lTV 97 (661)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+.... ...+++.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 46899999999999999999999999999999999987542 35 5544322111 01112222222211 122
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE-KKRLSIALEILTRPQLLFLDEPTS- 175 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe-rqRvsIa~aL~~~P~lllLDEPts- 175 (661)
.+++.... .+.++.++.++++++..++. ..+. . ..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~~-~-----~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-------IENGKFDQWFDELFGNDTFH-LYDS-F-----AEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-------HHHTHHHHHHHHHHSSSCEE-EECC-C-----CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-------CCHHHHHHHHHHHhccCCEE-EECC-C-----CCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 23333211 11233444555555433331 1111 1 2478888 67777 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHhc-CCEEEEEecCCc-h--------------------HHHhhcCeEEEEeCCeE
Q 045930 176 --G---LDS-AAAFFVVKILKNIAHD-GRTIISSIHQPS-S--------------------EVFALFDDLFLLSGGET 225 (661)
Q Consensus 176 --G---LD~-~~~~~i~~~L~~la~~-g~tvi~s~Hq~~-~--------------------~i~~~~D~v~lL~~G~~ 225 (661)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+.++||+|++|.+|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999875 999999999951 3 67889999999998874
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=6.2e-24 Score=212.86 Aligned_cols=173 Identities=13% Similarity=0.114 Sum_probs=109.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------cccCeEEEEecCCCCCCCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------LDYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------~~~~~i~yv~Q~~~l~~~l 95 (661)
.-|+|||+++++|++++|+||||||||||+++|+|++ + |+|.+ |.+.. ..++.++|++|++.+++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4689999999999999999999999999999999987 3 66777 54321 1235689999987666543
Q ss_pred CH-HHHHH---HHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH-----HHHHhhCCC
Q 045930 96 TV-RETIA---YSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI-----ALEILTRPQ 166 (661)
Q Consensus 96 TV-~E~l~---~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI-----a~aL~~~P~ 166 (661)
+. .+++. +..... +.+ ...++++++...+. ..+ ..+|||||||++| +++++.+|+
T Consensus 84 ~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp HHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred hhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 31 11111 111100 111 13466666654321 112 3599999999999 899999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-------cCCEEEEEecCCchHHHhhcCeEE
Q 045930 167 LLFLDEPTSGLDSAAAFFVVKILKNIAH-------DGRTIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 167 lllLDEPtsGLD~~~~~~i~~~L~~la~-------~g~tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
+++|||||+++|..+...+.+.|+++.+ .+...|+++|++ ++.....|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii 205 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHHH
Confidence 9999999999999999999988887654 234455555553 34555554443
No 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=3.6e-20 Score=218.86 Aligned_cols=158 Identities=27% Similarity=0.376 Sum_probs=122.5
Q ss_pred HHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCH------HHHHHHHHHH
Q 045930 52 DALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN------EEITDVIEEA 125 (661)
Q Consensus 52 ~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~------~~~~~~v~~~ 125 (661)
.|..+++++ ..++|.++|++... +..+||.|++.|...+.++..... ++. +...+.
T Consensus 386 ~C~g~rl~~---~~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 447 (916)
T 3pih_A 386 VCGGRRLNR---EALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEI-EKRLEF 447 (916)
T ss_dssp TTCSCCBCT---TGGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH-HHHHHH
T ss_pred hcccccCCh---HhcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHH-HHHHHH
Confidence 444445555 36888888876421 345789999988655443221110 111 234567
Q ss_pred HHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Q 045930 126 ITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTRPQ--LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202 (661)
Q Consensus 126 l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~--lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s 202 (661)
+..+||.+. .|+.++ +|||||||||.||++|+.+|+ +|+|||||+|||+.....+++.|++++++|.|||++
T Consensus 448 L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 448 LVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 888999864 677775 599999999999999999887 999999999999999999999999998889999999
Q ss_pred ecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 203 IHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 203 ~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
+||+ +.+ ..+|+|++| ++|++++.|++++.
T Consensus 523 tHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~ 558 (916)
T 3pih_A 523 EHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDEL 558 (916)
T ss_dssp CCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHH
T ss_pred eCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhh
Confidence 9996 344 569999999 89999999997654
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.80 E-value=2.7e-22 Score=211.70 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=98.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP 110 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 110 (661)
+++|+++||+||||||||||+++|+|++++. .|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~---- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHR---- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence 7999999999999999999999999998762 231 458999999999888 99999864221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 111 SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 111 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
.+.+.....+.+.+.++.++ .+..++.+ ..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 12222223456778888887 55555555 36999999999999999999999999999999986
No 85
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=4.7e-19 Score=208.19 Aligned_cols=135 Identities=30% Similarity=0.429 Sum_probs=112.5
Q ss_pred CCCCHHHHHHHHHhcCCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhCC
Q 045930 93 GTLTVRETIAYSAHLRLPSN---MN---NEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTRP 165 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P 165 (661)
..+||.|++.|...+.++.. .. .+++.+++ +.|+.+||... .|+.++ .|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCC
Confidence 35899999999877654321 00 03455566 45899999865 688775 59999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCChh
Q 045930 166 --QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSAP 235 (661)
Q Consensus 166 --~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 235 (661)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++ ++ ...+|+|++| .+|++++.|++++..
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999988899999999996 44 4679999999 799999999988753
No 86
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.79 E-value=1.7e-19 Score=203.04 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=70.8
Q ss_pred cccc-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 144 WRGI-SGGEKKRLSIALEILTRP--QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 144 ~~~L-SgGerqRvsIa~aL~~~P--~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |+|||++||+| ++...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~--~~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA--QIAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH--HHHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 3457 999999999999999999 99999999999999999999999999987 89999999996 355679999999
Q ss_pred eCC
Q 045930 221 SGG 223 (661)
Q Consensus 221 ~~G 223 (661)
.+|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 665
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=1.1e-19 Score=204.90 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=121.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhc
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHL 107 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l 107 (661)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.+++|++. .++.++. .++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~------------~vi~~~~ee~~----~~l~~~~---~~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE------------RAILFAYEESR----AQLLRNA---YSW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC------------CEEEEESSSCH----HHHHHHH---HTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC------------CEEEEEEeCCH----HHHHHHH---HHc
Confidence 568999999999999999999999999998654 232 12456677642 1223322 111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 045930 108 RLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA-----AA 182 (661)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~-----~~ 182 (661)
+.+. ++ +...|+.+..+..+ ..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 332 ----g~~~-------~~-~~~~g~~~~~~~~p-----~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 ----GMDF-------EE-MERQNLLKIVCAYP-----ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ----SCCH-------HH-HHHTTSEEECCCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ----CCCH-------HH-HHhCCCEEEEEecc-----ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 1221 12 23467766666554 469999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCc---------hHHHhhcCeEEEEeCCe
Q 045930 183 FFVVKILKNIAHDGRTIISSIHQPS---------SEVFALFDDLFLLSGGE 224 (661)
Q Consensus 183 ~~i~~~L~~la~~g~tvi~s~Hq~~---------~~i~~~~D~v~lL~~G~ 224 (661)
..+.+.++.+++.|.|||+++|+.. ..+..++|+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999888999999999961 45678999999999886
No 88
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.78 E-value=5.1e-21 Score=194.77 Aligned_cols=169 Identities=11% Similarity=0.098 Sum_probs=105.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
.+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.|
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~~ 77 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAEQ 77 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHhH
Confidence 467999999999999999999999999999999999975 222222 1245699999985 778899999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
++.+....... ..+.....+.+.+.++.+ .+..+..+ ..+|+||+||+.+ ++++.+|+++++|||....|.
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 78 KAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred hhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 98875432210 101111123344455443 34445544 3699999999988 578889999999999888876
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCchHHH-hhcCeEEEEeCCe
Q 045930 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVF-ALFDDLFLLSGGE 224 (661)
Q Consensus 180 ~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~-~~~D~v~lL~~G~ 224 (661)
. +.++ .+.+|++++|+.. .+. .+++++ .+|+
T Consensus 149 ~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 149 E--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR 180 (245)
T ss_dssp H--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C---
T ss_pred H--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC
Confidence 3 2222 3789999999732 343 344444 5553
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.78 E-value=3e-20 Score=222.89 Aligned_cols=170 Identities=22% Similarity=0.157 Sum_probs=118.3
Q ss_pred EEEEE-----EEEEeecCCcccccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE
Q 045930 3 LVWEE-----VTVVVPNFGSGPTRRLLNGLTGYAEP-------ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL 70 (661)
Q Consensus 3 l~~~~-----l~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~ 70 (661)
|+++| |+..+. .++.+++|+++.+++ |++++|+|||||||||||++| |++..
T Consensus 751 l~i~~~rHP~l~~~~~-----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~---------- 814 (1022)
T 2o8b_B 751 LELKGSRHPCITKTFF-----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV---------- 814 (1022)
T ss_dssp EEEEEECCCC-----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----------
T ss_pred EEEEeccccEEEEEec-----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----------
Confidence 66777 666542 135799999999987 999999999999999999999 87642
Q ss_pred CCeecccccCeEE-EEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 71 NGKKRRLDYGGVA-YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 71 ~g~~~~~~~~~i~-yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
..++| ||||+.. .+||.|++. ..+|+.+..+... ..+|+
T Consensus 815 --------~aqiG~~Vpq~~~---~l~v~d~I~------------------------~rig~~d~~~~~~-----stf~~ 854 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC---RLTPIDRVF------------------------TRLGASDRIMSGE-----STFFV 854 (1022)
T ss_dssp --------HHTTTCCEESSEE---EECCCSBEE------------------------EECC--------------CHHHH
T ss_pred --------HhheeEEeccCcC---CCCHHHHHH------------------------HHcCCHHHHhhch-----hhhHH
Confidence 01244 8999753 455555441 1122222211111 24677
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE-
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA-FFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV- 226 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~-~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v- 226 (661)
+++ ++++|++++++|+++||||||+|+|+... ..+.+.|+.++++ |.++|++||++ +.+..++|++.+++ |++.
T Consensus 855 em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~~-g~~~~ 931 (1022)
T 2o8b_B 855 ELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVRL-GHMAC 931 (1022)
T ss_dssp HHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEEE-EEEEE
T ss_pred HHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceeec-CeEEE
Confidence 665 49999999999999999999999999985 5578899999876 99999999995 56777899988874 7877
Q ss_pred -EecCC
Q 045930 227 -YFGEA 231 (661)
Q Consensus 227 -~~G~~ 231 (661)
+.|++
T Consensus 932 ~~~~~~ 937 (1022)
T 2o8b_B 932 MVENEC 937 (1022)
T ss_dssp C-----
T ss_pred EEecCc
Confidence 45554
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.77 E-value=1.1e-21 Score=221.27 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=121.3
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCceeeEEEECCeecc----cccCeEEEEecCCCCC
Q 045930 20 TRRLLNGLTG-YAEPARILAVMGPSGSGKSTLLDA--LAGRLSGNVVMTGNVLLNGKKRR----LDYGGVAYVTQENIML 92 (661)
Q Consensus 20 ~~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~--LaG~~~~~~~~~G~i~~~g~~~~----~~~~~i~yv~Q~~~l~ 92 (661)
..++|+|||+ .+++||+++|+||||||||||+++ ++|..+++ +|.|.++|++.. ...+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 3679999999 999999999999999999999999 78988753 799999997632 1235689999975422
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDE 172 (661)
++ +.+ .... . .+ ...++++.++|.+..++.+ +.|||| +|+++++||
T Consensus 101 ~~------l~~---~~~~-~-~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 101 GK------LFI---LDAS-P-DP-----EGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp TS------EEE---EECC-C-CS-----SCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEEC
T ss_pred Cc------EEE---EecC-c-cc-----chhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECC
Confidence 11 100 1000 0 00 0112334444444444444 246666 478999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH--------HHhhcCeEEEEeCCe
Q 045930 173 PTS-----GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE--------VFALFDDLFLLSGGE 224 (661)
Q Consensus 173 Pts-----GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~--------i~~~~D~v~lL~~G~ 224 (661)
||+ +||+..+..+.+.++++++.|+|||+++|++... ...+||+|++|++|+
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 998 5699999999999999988899999999997532 345699999999844
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=5.9e-19 Score=209.35 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=113.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
.+.+++|+|+.+++|++++|+||||||||||||++++..-- ...| +|||++....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~--aq~G----------------~~vpa~~~~~~~----- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM--AQIG----------------CFVPCESAEVSI----- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH--HHHT----------------CCBSEEEEEEEC-----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH--HhcC----------------CccccccccchH-----
Confidence 35789999999999999999999999999999999432100 0011 011110000000
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCC
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI--LTRPQLLFLDEPTSGL 177 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL--~~~P~lllLDEPtsGL 177 (661)
+++++..+|+.+. . .+++|+|++++..+|+++ +++|+++||||||+||
T Consensus 705 ----------------------~d~i~~~ig~~d~---l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl 754 (934)
T 3thx_A 705 ----------------------VDCILARVGAGDS---Q-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT 754 (934)
T ss_dssp ----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred ----------------------HHHHHHhcCchhh---H-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 0011112222211 1 135888888888888888 9999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 178 DSAAAFFV-VKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 178 D~~~~~~i-~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
|+.....+ ..+++.++++ |+++|++||+. ++.+++|++..+.+|++...++.++..
T Consensus 755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 755 STYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcEE
Confidence 99999888 6777888864 99999999994 678899999999999999988876644
No 92
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=9.1e-19 Score=206.46 Aligned_cols=135 Identities=24% Similarity=0.339 Sum_probs=110.1
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhC
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMN------NEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTR 164 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~ 164 (661)
+..+||.|.+.|...+.++.... .+++.+++ +.++.+||... .|+.++ .|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHHHhhC
Confidence 34589999999965543321000 03445555 35788999865 688775 5999999999999999999
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 165 --PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 165 --P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
|++|+|||||+|||+.....+.+.|++|++.|.|||+++|++ ++ ...+|+|++| .+|++++.|++++.
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~ 615 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDEL 615 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHh
Confidence 599999999999999999999999999988899999999996 44 5689999999 79999999997654
No 93
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.75 E-value=1.2e-20 Score=201.65 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=126.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------------ccCeEEEEec
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------------DYGGVAYVTQ 87 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------------~~~~i~yv~Q 87 (661)
+.++|+++ +.+.+||+++|+||||||||||+++|+|..+++ .|.|.+.|++... ..+.+.++.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 35699999 999999999999999999999999999998874 7999988864210 1245777777
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCE
Q 045930 88 ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167 (661)
Q Consensus 88 ~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~l 167 (661)
.+. ...+.+..... ...+.+.....+ .+... .. ..+..+|+|| ||+++| +.+|++
T Consensus 134 ~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~-~l--d~~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 134 SDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLL-MM--DSVTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp TTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEE-EE--ETHHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHH-HH--hhHHHHHHHH-HHHHHH---cCCCCc
Confidence 532 22222221100 000111111111 11110 00 1234699999 899999 688877
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh--cCC-----EEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNIAH--DGR-----TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~la~--~g~-----tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||+.....+.+.++++.+ +|. ||++++||.. ..+||+++++.+|+++.+|+.++
T Consensus 189 ------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHH
Confidence 999999999999999999975 477 8999999975 56799999999999999987544
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.75 E-value=1.7e-19 Score=182.39 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=104.6
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCceeeEEEECCeecc----cccCeEEEEecCCCCCCCC
Q 045930 23 LLNGLT-GYAEPARILAVMGPSGSGKSTLLDALA--GRLSGNVVMTGNVLLNGKKRR----LDYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 23 iL~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~La--G~~~~~~~~~G~i~~~g~~~~----~~~~~i~yv~Q~~~l~~~l 95 (661)
.|+++- +-+++||+++|+||||||||||+++|+ |...++ .|.+.+++.... ...+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 344442 479999999999999999999999999 652321 456666654321 1123356666654444444
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 045930 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175 (661)
Q Consensus 96 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts 175 (661)
++.++....... . .......+ ...+.++..+...+..-..+|+++++||||+
T Consensus 95 ~~~~~~~~~~~~---------~-~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~p~~lilDep~~ 146 (251)
T 2ehv_A 95 AIVDGVSSVVGL---------P-SEEKFVLE------------------DRFNVDNFLRYIYRVVKAINAKRLVIDSIPS 146 (251)
T ss_dssp EEEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHH
T ss_pred EEEEcccccccc---------c-cccceecc------------------CcccHHHHHHHHHHHHHhhCCCEEEEccHHH
Confidence 444433211100 0 00000000 1123444444444444467999999999999
Q ss_pred CCC-----HHHHHHHHHHHHHHHhcCCEEEEEecCCchHH---------Hhhc-CeEEEEe
Q 045930 176 GLD-----SAAAFFVVKILKNIAHDGRTIISSIHQPSSEV---------FALF-DDLFLLS 221 (661)
Q Consensus 176 GLD-----~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i---------~~~~-D~v~lL~ 221 (661)
+|| ...+..+.+.++.+++.|+|||+++|+.. +. ..+| |++++|+
T Consensus 147 ~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 147 IALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 998 67777799999999888999999999964 55 6788 9999995
No 95
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.74 E-value=6.5e-18 Score=158.93 Aligned_cols=80 Identities=28% Similarity=0.358 Sum_probs=72.4
Q ss_pred ccccCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 144 WRGISGGEKKRLSIA------LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 144 ~~~LSgGerqRvsIa------~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++ ++.+.||++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 467999999999886 899999999999999999999999999999999987799999999996 467899999
Q ss_pred EEE--eCCeE
Q 045930 218 FLL--SGGET 225 (661)
Q Consensus 218 ~lL--~~G~~ 225 (661)
++| .+|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 46643
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.73 E-value=6.6e-19 Score=181.21 Aligned_cols=133 Identities=17% Similarity=0.306 Sum_probs=98.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
.+|+|+| +++|++++|+||||||||||+++|+|.+++. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 5899999 8999999999999999999999999988651 2799999886542 233321100
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~ 181 (661)
. .. +.+|++. ..+ |++||++|..+|+++++|||| |+.+
T Consensus 75 -----v------~q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----V------NQ-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----E------EE-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----e------eH-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 00 0223321 113 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 182 ~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
...++ +. ++.|.+|++++|++. ....+|+++.|..
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 66543 33 456999999999964 6788999887753
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.73 E-value=3e-19 Score=178.19 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=93.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----ceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHH
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV----VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYS 104 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~----~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 104 (661)
+-+++||+++|+||||||||||+++|+|...+.. ...|.+.+++... ...+.+++++|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~-- 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EVLKHIY-- 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HHHHTEE--
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HHhhcEE--
Confidence 5799999999999999999999999999543210 0123444444321 000112222222211111 1222111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCCC
Q 045930 105 AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE-KKRLSIALEILT-------RPQLLFLDEPTSG 176 (661)
Q Consensus 105 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe-rqRvsIa~aL~~-------~P~lllLDEPtsG 176 (661)
+ .+..++++ ++++..+.+++. +|+++++||||++
T Consensus 96 --------------------------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 96 --------------------------V------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp --------------------------E------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred --------------------------E------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 1 01234443 334666666666 9999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHHhc-CCEEEEEecCCc---hHHHhhcCeEEEEeCCe
Q 045930 177 LDSA-------A-----AFFVVKILKNIAHD-GRTIISSIHQPS---SEVFALFDDLFLLSGGE 224 (661)
Q Consensus 177 LD~~-------~-----~~~i~~~L~~la~~-g~tvi~s~Hq~~---~~i~~~~D~v~lL~~G~ 224 (661)
+|+. . ..++++.|++++++ |.|||+++|... ..+...+|+++.|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9984 2 23788888888765 999999999532 23778899999998753
No 98
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.71 E-value=1.3e-20 Score=186.62 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=114.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCC--CCCCHHHHHHHHHhcC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML--GTLTVRETIAYSAHLR 108 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~l~ 108 (661)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|++++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 578999999999999999999999997542 479999998776 56899998765321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------C
Q 045930 109 LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE----KKRLSIALEILTRPQLLFLDEPTSG-------L 177 (661)
Q Consensus 109 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe----rqRvsIa~aL~~~P~lllLDEPtsG-------L 177 (661)
.+ .....+++.+.++.+++.+..+..+ ..+|+|| +||+++|++++.+|+++++||||++ |
T Consensus 61 ~~----~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HP----DAFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SG----GGBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Ch----hhhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11 1112345677788888877666543 3589996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HhcCCEEEEEecCC
Q 045930 178 DSAAAFFVVKILKNI-AHDGRTIISSIHQP 206 (661)
Q Consensus 178 D~~~~~~i~~~L~~l-a~~g~tvi~s~Hq~ 206 (661)
|+.....+.+.+++. .++|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999886 45699999999974
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.71 E-value=8.6e-18 Score=198.89 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=100.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
++.|++|||+.+++|++++|+||||||||||||++++..-.. ..|. ..... -+.+..-+.++..+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa~---~~~i~~~d~i~~~i---- 723 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPAE---EATIGIVDGIFTRM---- 723 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSSS---EEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccch---hhhhhHHHHHHHhC----
Confidence 467999999999999999999999999999999998642100 0110 00000 01111112222222
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
|+.+..+... ..+|+|++|++.|+++ +++|+++||||||+|||+
T Consensus 724 ------------------------------g~~d~l~~~~-----stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 724 ------------------------------GAADNIYKGR-----STFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred ------------------------------ChHHHHHHhH-----HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 2222112211 3589999999999998 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-cCCEEEEEecCCchHHHhhcCeE
Q 045930 180 AAAFFVV-KILKNIAH-DGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 180 ~~~~~i~-~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
.....+. .+++.+++ .|.|||++||++ ++.+++|+.
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 9999997 77888876 599999999995 466677654
No 100
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.71 E-value=2.4e-17 Score=193.35 Aligned_cols=111 Identities=26% Similarity=0.423 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 045930 117 EITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTRP--QLLFLDEPTSGLDSAAAFFVVKILKNIA 193 (661)
Q Consensus 117 ~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P--~lllLDEPtsGLD~~~~~~i~~~L~~la 193 (661)
++.++++ .++.+||.+. .++.++ .|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|+
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 3455665 5889999865 687775 59999999999999999999 5999999999999999999999999998
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCChh
Q 045930 194 HDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSAP 235 (661)
Q Consensus 194 ~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 235 (661)
+.|.|||+++|++ + +.+.+|+|++| .+|++++.|++++..
T Consensus 429 ~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 429 RGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8899999999996 3 56789999999 799999999987653
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.70 E-value=3.9e-18 Score=198.93 Aligned_cols=147 Identities=24% Similarity=0.204 Sum_probs=105.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS-GNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
++.+++|+|++ |++++|+||||||||||||+|+|... +. .|.+. ......+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------pa~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------PAEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------SSSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------ehhccceeeHHH---hhccCCHH
Confidence 36799999998 99999999999999999999999752 21 34321 112235677766 45556666
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI--LTRPQLLFLDEP--- 173 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL--~~~P~lllLDEP--- 173 (661)
|++. .++|+|+++++.+++++ +++|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5542 13789999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 174 TSGLDSAAA-FFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 174 tsGLD~~~~-~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|++||..+. ..+++.|++ .|.++|++||++ ++.+++ .--+.++++.....
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAAREE 718 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEECC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEEEc
Confidence 999998875 567777766 589999999995 455555 22234455444433
No 102
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.68 E-value=6.1e-18 Score=198.34 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=109.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
++.+++|+|+. ++|++++|+||||||||||||+|+|..... ..| .........++++.| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHHH
Confidence 35799999999 999999999999999999999999964210 012 111111223555544 455556665
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
++... + ..+|+|++ +++.+...+++|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 54321 0 12566655 45555667999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 180 AAAFFV-VKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 180 ~~~~~i-~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
.....+ .+.++.++++ |.++|++||++ ++..++|++..+.+|++.+....
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 887776 7888999874 99999999996 45678998877888887665543
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.67 E-value=5.1e-19 Score=185.77 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=87.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCceeeEEEECCeecc--cccCeEEEEecCCCCCCCCCH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR-LSGNVVMTGNVLLNGKKRR--LDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~-~~~~~~~~G~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lTV 97 (661)
+.+++|+++++ +|+||||||||||+|+|+|. ..+ .+| +.++|.+.. ...+.+++++|++.....+||
T Consensus 11 ~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 11 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp -------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEE
T ss_pred EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---CCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 67999999998 99999999999999999997 544 367 777776532 123458999999888888999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-C
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS-G 176 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts-G 176 (661)
.|+..+..... ..+..+..++.+ .+..+..+ +++|||||||+.+|++++ ++++||||+ |
T Consensus 81 ~Dt~g~~~~~~-----~~e~~~~l~~~l------~~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAIN-----CRDCFKTIISYI------DEQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHH------HHHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcC-----cHHHHHHHHHHH------HHHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 99987754321 001111122221 12234444 469999999999888875 999999998 5
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCCc
Q 045930 177 LDSAAAFFVVKILKNIAHD-GRTIISSIHQPS 207 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~ 207 (661)
||+... +.++++.++ +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 566666654 788999999953
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.67 E-value=2.2e-18 Score=184.68 Aligned_cols=166 Identities=20% Similarity=0.163 Sum_probs=100.9
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-ceeeE-EEECCeecccccCeEEEEecCCCCCCCCCH
Q 045930 23 LLNGL-TGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNV-VMTGN-VLLNGKKRRLDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 23 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~-~~~G~-i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV 97 (661)
.|+++ ++.+++|++++|+||||||||||++.|++.. ++.. ...|+ |.+++... ..++++++++|+..+++. ++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~-~~~~~i~~i~q~~~~~~~-~v 196 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EV 196 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC-CCHHHHHHHHHTTTCCHH-HH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC-CCHHHHHHHHHHcCCCHH-HH
Confidence 45665 6899999999999999999999999999986 3310 01256 66666432 112234445554433222 33
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh-------hCCCEEEE
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL-------TRPQLLFL 170 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~-------~~P~lllL 170 (661)
.||+.+.. . --|.+++|++.++++++ .+|+++++
T Consensus 197 ~~ni~~~~-------------------------------~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 197 LKHIYVAR-------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp GGGEEEEE-------------------------------C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred hhCEEEEe-------------------------------c--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 33322110 0 01456677777777777 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 171 DEPTSGLDSAA------------AFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 171 DEPtsGLD~~~------------~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||+++|+.. ..++++.|++++++ |+|||+++|... .....++......+|+++.++.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 99999999852 35677777887764 899999999853 4544566666777787765554
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.66 E-value=5.2e-18 Score=178.20 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=106.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----------ccCeEEEEecCCCCCCCCCHHHHH
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----------DYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----------~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
+|++++|+||||||||||+++|+|++++. .|+|.++|.+... .+..++|++|++.+.|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999998774 7999999876421 123589999999888999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~ 181 (661)
.++.... .. ..+++..|+.+..+.. ++..++||++|||+++.+|+.++| +||+.+
T Consensus 178 ~~~~~~~----~d--------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARG----YD--------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHT----CS--------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCC----CC--------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 8653210 00 0122333443322222 455669999999999999994444 455555
Q ss_pred HHHHHHHHHHHHhc-CCEEEEEecCC
Q 045930 182 AFFVVKILKNIAHD-GRTIISSIHQP 206 (661)
Q Consensus 182 ~~~i~~~L~~la~~-g~tvi~s~Hq~ 206 (661)
..++++.++++.++ |.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 55677777887765 89999999984
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.66 E-value=1.1e-16 Score=165.88 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=105.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRL 109 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~ 109 (661)
-+++|++++|+||||||||||++.+++... .|++. .|.+.. ....+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~-~~~~v~~~~~e~~~---~~~~~r~~---~~g- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGEL-PTGPVIYLPAEDPP---TAIHHRLH---ALG- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCC-CCCCEEEEESSSCH---HHHHHHHH---HHH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccC-CCccEEEEECCCCH---HHHHHHHH---HHH-
Confidence 489999999999999999999999998543 34442 243321 12458888877532 01112221 111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HH
Q 045930 110 PSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS--GLDSAAA---FF 184 (661)
Q Consensus 110 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts--GLD~~~~---~~ 184 (661)
..... ...+++++.+++.+..+..+ ..+|+||++++ ++++.+|+++++||||+ ++|.... .+
T Consensus 92 -~~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 92 -AHLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp -TTSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred -hhcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 11122 23566788888877766554 45999998875 68889999999999999 9997544 88
Q ss_pred HHHHHHHHHh-cCCEEEEEecCC
Q 045930 185 VVKILKNIAH-DGRTIISSIHQP 206 (661)
Q Consensus 185 i~~~L~~la~-~g~tvi~s~Hq~ 206 (661)
+++.|+++++ .|+|||+++|+.
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 8899999975 599999999995
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=2.3e-18 Score=197.31 Aligned_cols=170 Identities=17% Similarity=0.175 Sum_probs=112.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec--------ccccCeEEEEecCCCCCCCCCHHHH
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR--------RLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~--------~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.++. +||+|||||||||||++|+|+..|. .+|.|+++|.+. ...++.++|++|+..+++.+||+|+
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 117 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKE 117 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHH
Confidence 44443 9999999999999999999998662 389999999763 1234679999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC------C
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP------T 174 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP------t 174 (661)
+.+......... -++++ +++.++.+...+|+++++||| |
T Consensus 118 i~~~~~~~~~~~----------------~~~s~-------------------~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 118 INKAQNAIAGEG----------------MGISH-------------------ELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp HHHHHHHHHCSS----------------SCCCS-------------------CCEEEEEEESSSCCEEEEECCC------
T ss_pred HHHHHHHhcCCc----------------cccch-------------------HHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 987643210000 01111 111111222348999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCc------hHHHhh-----cCeEEEEeCCeEEEecCCCChhHHH
Q 045930 175 SGLDSAAAFFVVKILKNIAHD--GRTIISSIHQPS------SEVFAL-----FDDLFLLSGGETVYFGEAKSAPTFF 238 (661)
Q Consensus 175 sGLD~~~~~~i~~~L~~la~~--g~tvi~s~Hq~~------~~i~~~-----~D~v~lL~~G~~v~~G~~~~~~~~f 238 (661)
+|||+..+.++.+.++++.++ +.++++++|+.. ..+... ...|.++.++..+..|+.+++.+..
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 999999999999999997543 678888999853 112222 2457888999988888766555433
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.64 E-value=2.1e-17 Score=164.65 Aligned_cols=169 Identities=15% Similarity=0.090 Sum_probs=107.8
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 21 RRLLNGLTG-YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 21 ~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.+.+ +..+. +..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~--------------~~~~~------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIY--------------VTTEE------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEE--------------EESSS------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEE--------------EEccc------CHHH
Confidence 457888885 8999999999999999999999999987543 1344433 22211 1111
Q ss_pred HHHHHHhcCCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCC--EEEEeCCCC
Q 045930 100 TIAYSAHLRLPSNMNNEEIT--DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ--LLFLDEPTS 175 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~--~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~--lllLDEPts 175 (661)
.......... ........ ..++.....++ ... .....|.+|.++...+.....+|+ ++++||||+
T Consensus 66 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 66 IIRQAKQFNW--DFEEYIEKKLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp HHHHHHHTTC--CCGGGBTTTEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred HHHHHHHhcc--hHHHHhhCCEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 1111111110 00000000 00000000000 000 012358999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHhc-CCEEEEEecCCc-------hHHHhhcCeEEEEeCC
Q 045930 176 GL--DSAAAFFVVKILKNIAHD-GRTIISSIHQPS-------SEVFALFDDLFLLSGG 223 (661)
Q Consensus 176 GL--D~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~-------~~i~~~~D~v~lL~~G 223 (661)
++ |+.....+++.|++++++ |.|||+++|+.. ..+.++||++++|+..
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 87 999999999999999764 899999999962 3488899999999754
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.60 E-value=1.6e-16 Score=170.28 Aligned_cols=127 Identities=21% Similarity=0.306 Sum_probs=88.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc-cCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD-YGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....++++|.......+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~------------- 183 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDTL------------- 183 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBS-------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccccC-------------
Confidence 67899999999999999999999999988652 145655433332211 12234444433211111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 045930 109 LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188 (661)
Q Consensus 109 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~ 188 (661)
+-.+ +||++|..+|++|++|||| |..+ ++.
T Consensus 184 ---------------------------------------~~~~----~La~aL~~~PdvillDEp~---d~e~----~~~ 213 (356)
T 3jvv_A 184 ---------------------------------------GFSE----ALRSALREDPDIILVGEMR---DLET----IRL 213 (356)
T ss_dssp ---------------------------------------CHHH----HHHHHTTSCCSEEEESCCC---SHHH----HHH
T ss_pred ---------------------------------------CHHH----HHHHHhhhCcCEEecCCCC---CHHH----HHH
Confidence 1111 8999999999999999999 6555 444
Q ss_pred HHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 189 LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 189 L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
+.++++.|.+|++|+|+.+ .+ +.+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 5556777999999999974 34 889999988654
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.60 E-value=6e-18 Score=165.73 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=101.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP 110 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 110 (661)
|++++|+||||||||||+++|+|.++ . +| |.++|.... ...+.+||++|+. .... +++ +++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc-
Confidence 78999999999999999999999875 3 57 777765432 2357799999974 1111 111 11110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHH
Q 045930 111 SNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRL-SIAL---EILTRPQLLFLDE--PTSGLDSAAAF 183 (661)
Q Consensus 111 ~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRv-sIa~---aL~~~P~lllLDE--PtsGLD~~~~~ 183 (661)
+..+ ..+..+|. ....+|+|||+++ ++++ |++.+|+++|+|| |+..+|...
T Consensus 67 -------------------~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~-- 124 (189)
T 2i3b_A 67 -------------------EPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF-- 124 (189)
T ss_dssp -------------------CCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH--
T ss_pred -------------------cCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH--
Confidence 1111 01123332 2245999999988 4444 5789999999999 899998865
Q ss_pred HHHHHHHHHHhcCCEEEE----EecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 184 FVVKILKNIAHDGRTIIS----SIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 184 ~i~~~L~~la~~g~tvi~----s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
++.|+++.++..++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 125 --~~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 125 --IQAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp --HHHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred --HHHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4555555444445553 238852 3567888888889887643
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.58 E-value=2.1e-17 Score=162.46 Aligned_cols=176 Identities=14% Similarity=0.063 Sum_probs=98.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCceeeEEEECCeeccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-----SGNVVMTGNVLLNGKKRRL 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-----~~~~~~~G~i~~~g~~~~~ 77 (661)
|+++|+++.+. ..++++ +.+++|+.++|+|+||||||||+|.|+|.. .+ ..|.+...+... .
T Consensus 4 l~~~~~~~~~~-------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~-~ 70 (210)
T 1pui_A 4 LNYQQTHFVMS-------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFE-V 70 (210)
T ss_dssp -------CEEE-------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE-E
T ss_pred hhhhhhhheee-------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEE-e
Confidence 67889988774 247787 889999999999999999999999999986 32 245443211100 0
Q ss_pred ccCeEEEEecCCCC----CCCCC---HHHHHHHHHhc-CCC--------CCCCHHHHHHHHHHHHHHcCCCcc-cccccc
Q 045930 78 DYGGVAYVTQENIM----LGTLT---VRETIAYSAHL-RLP--------SNMNNEEITDVIEEAITEMGLEDC-ADRLIG 140 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l----~~~lT---V~E~l~~~~~l-~~~--------~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg 140 (661)
. ..+-.+ +.+.+ .+.-. .+..+....+. +.. .........+.+.++++..++... ..+++
T Consensus 71 ~-~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~- 147 (210)
T 1pui_A 71 A-DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA- 147 (210)
T ss_dssp E-TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG-
T ss_pred c-CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc-
Confidence 0 001111 11110 00000 11222221110 000 000011222345566677776543 23444
Q ss_pred CccccccCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 045930 141 NWHWRGISGGEKKR-LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198 (661)
Q Consensus 141 ~~~~~~LSgGerqR-vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~t 198 (661)
..+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.+
T Consensus 148 ----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 148 ----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 3589999999 89999999999999999999999999999999999998766644
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=8.5e-17 Score=175.74 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=94.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|.++||++.+. .+.+++|+|++| +|+||||||||||+|+|+|...+... .|.+.+++.+ ....+.+
T Consensus 12 l~~~~l~~~y~------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 12 VGFANLPNQVY------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ---CCCCCCTT------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred EEEEecceeEC------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 45556555442 357999999998 99999999999999999998753211 2222222211 1123458
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
++++|++.+++.+||.||+.+..... ..+....+.+.++ ..++.+++||+.||++++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQM 134 (418)
T ss_dssp ECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 99999988888999999988764321 1111111111111 135667788999999999
Q ss_pred hCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 163 TRPQ---LLFLDEPT-SGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 163 ~~P~---lllLDEPt-sGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
.+|+ +|++|||| .|||+... +.++.+.. +.+||+++|..
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred cCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 9999 99999999 69998873 44555544 77888888874
No 113
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.55 E-value=3.3e-15 Score=147.84 Aligned_cols=154 Identities=21% Similarity=0.171 Sum_probs=101.8
Q ss_pred ceeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 22 RLLNGLT-GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 22 ~iL~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
..|+++. +-+++|++++|+||||||||||++.|++ .. .+ .+.|+..++.+ +.. .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~----~~--------------~v~~i~~~~~~----~~~-~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS----GK--------------KVAYVDTEGGF----SPE-R 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH----CS--------------EEEEEESSCCC----CHH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc----CC--------------cEEEEECCCCC----CHH-H
Confidence 4577776 4799999999999999999999999998 21 12 23444443311 221 1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE--KKRLSIALEILTR-PQLLFLDEPTSGL 177 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe--rqRvsIa~aL~~~-P~lllLDEPtsGL 177 (661)
+.-... .. .... +++++.+. + ...++++ ++++..+++++.+ |+++++||||+++
T Consensus 62 ~~~~~~-~~--~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQMAE-TR--GLNP-------EEALSRFI--------L-----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHH-TT--TCCH-------HHHHHHEE--------E-----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHH-hc--CCCh-------HHHhhcEE--------E-----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 111111 00 1111 11222211 1 1245554 5788888999986 9999999999999
Q ss_pred CHH--------HHHHHHHHHHHHHhc-CCEEEEEecCCch------------HHHhhcCeEEEEeCC
Q 045930 178 DSA--------AAFFVVKILKNIAHD-GRTIISSIHQPSS------------EVFALFDDLFLLSGG 223 (661)
Q Consensus 178 D~~--------~~~~i~~~L~~la~~-g~tvi~s~Hq~~~------------~i~~~~D~v~lL~~G 223 (661)
|.. ...++++.|++++++ |.|||+++|.... .+...+|.+++|+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 973 235567778888775 8999999998541 477899999999754
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.54 E-value=1e-18 Score=170.04 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=113.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM 113 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 113 (661)
|++++|+||||||||||+++|++. ..|.+.++|...... ...++++|.....+.+|+++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFL---- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHH----
Confidence 789999999999999999999973 257888888653221 234667776544455678888776543210
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---cccccc--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 045930 114 NNEEITDVIEEAITEMGLEDCADRLIGN---WHWRGI--SGGEKKRLSIAL------EILTRPQLLFLDEPTSGLDSAAA 182 (661)
Q Consensus 114 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~---~~~~~L--SgGerqRvsIa~------aL~~~P~lllLDEPtsGLD~~~~ 182 (661)
. -+-....+...+. ...+.+ |+|++|++.++. +++.+|+...+|| |||+...
T Consensus 71 -------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 71 -------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp -------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred -------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0 0111111111000 001235 888888888888 9999999988884 8999888
Q ss_pred HHHHHHHHHHHhcCCEEEEEecC-CchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 183 FFVVKILKNIAHDGRTIISSIHQ-PSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 183 ~~i~~~L~~la~~g~tvi~s~Hq-~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
.. .+.++.+.+.+.+||.++|+ + +++.+.||+|+ ++|+++..|+++.
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDP 181 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC-----
T ss_pred HH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCc
Confidence 88 88888886668899999998 6 47889999999 9999999998754
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.52 E-value=1.9e-16 Score=158.62 Aligned_cols=148 Identities=20% Similarity=0.200 Sum_probs=97.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-ccCeEEEEecCCCCCCCCCH----HHHHH
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DYGGVAYVTQENIMLGTLTV----RETIA 102 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTV----~E~l~ 102 (661)
.-..++|++++|+||||||||||+++|+|..++. ...|.|.+++.+... .++.++|++|++..++.+|+ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3457899999999999999999999999998752 258889888865432 23568999997655544443 22211
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 045930 103 YSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182 (661)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~ 182 (661)
+. |+ ..+.| +++ +.+++..++++||| ||+.++
T Consensus 89 ~~-----------------------------------~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VF-----------------------------------GN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ET-----------------------------------TE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HH-----------------------------------hc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 10 10 01122 121 34556668999999 999999
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHH
Q 045930 183 FFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFF 238 (661)
Q Consensus 183 ~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f 238 (661)
.++.+.+. ++.||++++|++ .++.+ |+ +.+| .++++++..-+
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 99998876 589999999996 34444 42 5666 35554444433
No 116
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.52 E-value=3.9e-14 Score=136.52 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=68.0
Q ss_pred ccccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 045930 144 WRGISGGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFL 219 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~l 219 (661)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|++ .....+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35799999999999999975 4699999999999999999999999999875 46899999994 57789999997
Q ss_pred Ee--CCe
Q 045930 220 LS--GGE 224 (661)
Q Consensus 220 L~--~G~ 224 (661)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 564
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.50 E-value=6.5e-17 Score=157.03 Aligned_cols=150 Identities=15% Similarity=0.029 Sum_probs=95.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cccCeEEEEecCCCCCCCCCHHHHHHHHHh
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDYGGVAYVTQENIMLGTLTVRETIAYSAH 106 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 106 (661)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.+.. ...+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 37899999999999999999999999982 2689999986531 11234577777543 45788998876543
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccc--cccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 045930 107 LRLPSNMNNEEITDVIEEAITEMGLEDCA--DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF 184 (661)
Q Consensus 107 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~--d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~ 184 (661)
.....+. ...++.+++..++.... +.. +..+|+|++||+.++|++..+|+++ +|+.....
T Consensus 78 ~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~-----~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~ 139 (191)
T 1zp6_A 78 RYAKEGY-----FVILDGVVRPDWLPAFTALARP-----LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVAD 139 (191)
T ss_dssp HHHHTSC-----EEEECSCCCTTTTHHHHTTCSC-----EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHH
T ss_pred HHhccCC-----eEEEeccCcHHHHHHHHhcCCC-----eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHH
Confidence 2100000 00011111112222222 111 2359999999999999999999876 68887777
Q ss_pred HHHHHHHHHhcCCEEEEEec
Q 045930 185 VVKILKNIAHDGRTIISSIH 204 (661)
Q Consensus 185 i~~~L~~la~~g~tvi~s~H 204 (661)
+.+.++.+...+..+|.+++
T Consensus 140 ~~~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 140 LHSQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHHHTTCCGGGGGGEEECTT
T ss_pred HHHHHhccCcccccEEECCC
Confidence 77776665433334444443
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=5e-15 Score=161.37 Aligned_cols=169 Identities=15% Similarity=0.146 Sum_probs=112.3
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHH
Q 045930 21 RRLLNGLTGYAEPARI--LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|....... .....+.++|++|++.+++.+||.
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~-~~~~~~~i~~v~Q~~~l~~~ltv~ 100 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQ-PGVQLQSNTYDLQESNVRLKLTIV 100 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC-SSCEEEEEEEEEEC--CEEEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCC-ccceEeeEEEEeecCccccccchh
Confidence 34 9999999999999 99999999999999999999841 232111101 111234699999999888899999
Q ss_pred HHHHHHHhcCCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccccc------CccccccCHHHHHHHHHHH
Q 045930 99 ETIAYSAHLRLPSNMNNE--------EITDVIEEAITEM-GLED----CADRLIG------NWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~d~~vg------~~~~~~LSgGerqRvsIa~ 159 (661)
||+.++.. .... ..++..++.++.. ++.. ..|+.+. .+..++++-.+ +.|++
T Consensus 101 D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk 171 (427)
T 2qag_B 101 STVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMK 171 (427)
T ss_dssp EEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHH
T ss_pred hhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHH
Confidence 99876532 1111 1234455566654 5432 2233211 00113577666 78999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCEEEEEecC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKN-IAHDGRTIISSIHQ 205 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~-la~~g~tvi~s~Hq 205 (661)
+|..+++++++||||..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 172 ~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 172 KLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999999999986 87789988887754
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.46 E-value=5.3e-17 Score=174.83 Aligned_cols=176 Identities=15% Similarity=0.045 Sum_probs=106.2
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCcee----eEEEECCeecccccCeEEEEecCCCCCCCCC
Q 045930 23 LLNGLTGYAEP--ARILAVMGPSGSGKSTLLDALAGRLSGNVVMT----GNVLLNGKKRRLDYGGVAYVTQENIMLGTLT 96 (661)
Q Consensus 23 iL~~vs~~i~~--Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~----G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lT 96 (661)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++. + |++.+++... ..+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 45779999999 9999999999999999999999998763 5 5554421100 0011111112
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCccccccCHHHHHHHHHHHHHh-hCCCEEEEeC-
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEM--GLEDCADRLIGNWHWRGISGGEKKRLSIALEIL-TRPQLLFLDE- 172 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~-~~P~lllLDE- 172 (661)
. +++.+... +....-..+.+.+ +..+..++.+ ..+|+|++||..+++++. .+|++++|||
T Consensus 223 ~-~~I~~~~q----------~~~~~~~t~~~nl~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQ----------RYIDYAVRHSHKIAFIDTDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHH----------HHHHHHHHHCSSEEEESSCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHH----------HHHHHHHhccCCEEEEeCCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 2 33433211 0000000000111 0011112211 246777788888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 173 --PT------SGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 173 --Pt------sGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
|+ .++|...+..+.+.|+++.+ .|.+|++++|. ++..+++|++.++++ ++..|..+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~--~~~~r~~~~i~~i~~--~l~~~~~~ 351 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP--SYLDRYNQVKAVIEK--VLNEEEIS 351 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS--SHHHHHHHHHHHHHH--HTSCCCCS
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHH--Hhcccchh
Confidence 65 58999999999999999865 48999999875 366777887777653 33344443
No 120
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.45 E-value=9.8e-17 Score=162.96 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=99.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCceeeEEEECCeeccc-ccCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 33 PARILAVMGPSGSGKSTLLDALA---GRLSGNVVMTGNVLLNGKKRRL-DYGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~La---G~~~~~~~~~G~i~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
++++++|+||||||||||+++|+ |...+ ..|+|..+|.+... ....+.+++|+..+++..|+.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999 98765 36877776543211 1123455677777888889999998754210
Q ss_pred C-----CCCCCHHHHHHHHHHHHH--HcC------------CCccccccccCccccccCHHHHHHHHHHHHH-hhCCCEE
Q 045930 109 L-----PSNMNNEEITDVIEEAIT--EMG------------LEDCADRLIGNWHWRGISGGEKKRLSIALEI-LTRPQLL 168 (661)
Q Consensus 109 ~-----~~~~~~~~~~~~v~~~l~--~lg------------L~~~~d~~vg~~~~~~LSgGerqRvsIa~aL-~~~P~ll 168 (661)
. -.+.+... ..++.+.+ ..+ ++...++.+ ..+|| |+ +++ +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCccc
Confidence 0 00111111 12222221 222 223334444 35898 66 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhcC
Q 045930 169 FLD----EPTSGLDSAAAFFVVKILKNIAHDG 196 (661)
Q Consensus 169 lLD----EPtsGLD~~~~~~i~~~L~~la~~g 196 (661)
+|| |||+|||..+...+.+.|+++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999987653
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.45 E-value=9.9e-15 Score=157.55 Aligned_cols=130 Identities=16% Similarity=0.258 Sum_probs=95.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-ccCeEEEEecCCCCCCCCCHHHHH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
+|++++ +++|++++|+||||||||||+++|+|.+++. .+|+|.+.|.+... .+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 7899999999999999999999999988651 16899776655432 234567787741
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~ 181 (661)
+|++. ..+ +.+|+.+|..+|+++++|||+ |..+
T Consensus 191 ---------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 22211 124 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 182 ~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
... .++. +..|.+|+.|+|+. ++.+.+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 443 3443 45689999999995 3777888886653
No 122
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.44 E-value=2.8e-14 Score=153.41 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=99.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-cc--ccCeEEEEe-cCCCCCCCCCHHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RL--DYGGVAYVT-QENIMLGTLTVRE 99 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~--~~~~i~yv~-Q~~~l~~~lTV~E 99 (661)
++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|.++|... .. .++.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 39999999999999999999999999999999999874 89999998531 11 346688988 65431
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
+++++...|..|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222355566666777899999999986
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 180 ~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
.++.+.|+.+...+.|++.++|..+ ....+||+..+..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455667777554568899999953 778899999887664
No 123
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.44 E-value=5e-14 Score=150.49 Aligned_cols=139 Identities=24% Similarity=0.190 Sum_probs=99.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCceeeEEEEC-Ceecc-cccCeEEEEecCCCCCCCCCHHH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS-GNVVMTGNVLLN-GKKRR-LDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~i~~~-g~~~~-~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
-+++++.. .+|++++|+||||||||||+|+|+|... + .+|+|.++ |.... .....+++++|+..++++.||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 35666664 4899999999999999999999999987 6 48999887 65432 23467999999999999999998
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
+ . + ...+.++..+.+.++++.+|+.+..|.... ++| ||+||++||+++ ++.
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl---------------i~~ 331 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA---------------IAE 331 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS---------------SCH
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC---------------CCH
Confidence 4 1 1 135566777788899999999988888775 599 999999999764 344
Q ss_pred HHHHHHHHHHHHHHh
Q 045930 180 AAAFFVVKILKNIAH 194 (661)
Q Consensus 180 ~~~~~i~~~L~~la~ 194 (661)
.-.....++++++++
T Consensus 332 ~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 332 TRFENYHRILESMAQ 346 (358)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHh
Confidence 444445566666643
No 124
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.42 E-value=9.4e-14 Score=139.44 Aligned_cols=158 Identities=16% Similarity=0.242 Sum_probs=88.2
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCC--ceeeEEEECCeecccccCeEEEEecCCCCCCCCCHH
Q 045930 24 LNGLT-GYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNV--VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 24 L~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG--~~~~~~--~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
|+.+- +-+++|++++|+||||||||||++.|++ ..++.. ...|.+.++ -++.+ ...
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~---------------~~~~~----~~~ 73 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID---------------TEGTF----RPE 73 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE---------------SSSCC----CHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE---------------CCCCc----CHH
Confidence 44433 5799999999999999999999999999 343210 012333333 33211 111
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR-LSIALEIL--TRPQLLFLDEPTS 175 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR-vsIa~aL~--~~P~lllLDEPts 175 (661)
+......++. ...+ ++++.+.+ .+..+..+... +.-+.+++ .+|+++++|||++
T Consensus 74 ~~~~~~~~~g----~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 74 RLLAVAERYG----LSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHcC----CCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1111111111 1111 11221110 11245555432 33344444 4799999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHhc-CCEEEEEecCCchH------------------HHhhcCeEEEEeCC
Q 045930 176 GLDSA-------A-----AFFVVKILKNIAHD-GRTIISSIHQPSSE------------------VFALFDDLFLLSGG 223 (661)
Q Consensus 176 GLD~~-------~-----~~~i~~~L~~la~~-g~tvi~s~Hq~~~~------------------i~~~~D~v~lL~~G 223 (661)
.+|+. . ...+++.|++++++ |.|||+++|..... +..++|.+++|+.|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 34566777777765 99999999964311 22379999999865
No 125
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.41 E-value=4.5e-17 Score=172.22 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=101.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC-----CceeeEEEECCeecccc--------------------cCeEEEE---
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGN-----VVMTGNVLLNGKKRRLD--------------------YGGVAYV--- 85 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-----~~~~G~i~~~g~~~~~~--------------------~~~i~yv--- 85 (661)
=++++|+|+||||||||||.|.|..++. ....|+|.++|.+.... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999986210 11368888888764211 1224555
Q ss_pred ecCCCCCCCCCHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 86 TQENIMLGTLTVRETIAYSAHLRLPSNM---NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 86 ~Q~~~l~~~lTV~E~l~~~~~l~~~~~~---~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|+..+++..+|.||..++......... .......+++.++..+++.+..++.. ++|+||+||+..+++++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEE
Confidence 4655555566666665432000000000 00000011222333445555444433 58999999999989999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFD 215 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D 215 (661)
.+|+++ ||| ..+.+.|++++ .+.+|++++|++. +...++|
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 999987 998 67888888875 5899999999864 3444443
No 126
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.40 E-value=8.1e-13 Score=142.46 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=66.9
Q ss_pred ccccCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 045930 144 WRGISGGEKKRL------SIALEILTR-PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 144 ~~~LSgGerqRv------sIa~aL~~~-P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
+..+|||||||+ ++|++++.+ |++|+|||||+|||+..+..+.+.|+++.+ +.+||++||++ ++...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCCE
Confidence 457999999988 567888999 999999999999999999999999999753 56899999996 36789999
Q ss_pred EEEEe
Q 045930 217 LFLLS 221 (661)
Q Consensus 217 v~lL~ 221 (661)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 127
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.37 E-value=2.1e-14 Score=156.75 Aligned_cols=169 Identities=16% Similarity=0.106 Sum_probs=100.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAY 103 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 103 (661)
-+++++++++|+.++|+|+|||||||||++|+|..+ .+.+.+.......++++.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCc--ceEEEEecccc
Confidence 379999999999999999999999999999999742 1222222111233555555430 01111111100
Q ss_pred H--HhcCCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 104 S--AHLRLPSNMNNEEIT--DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 104 ~--~~l~~~~~~~~~~~~--~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
. +.. .........+ ++++.++..++++ +.. ...+|+|++||+.+|++|+.+|.++++ +++|.
T Consensus 216 i~~a~~--~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 216 IEGASE--GKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCGGG--SCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccchhh--hhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 0 000 0011111111 1122233333443 222 346999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEE
Q 045930 180 AAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 180 ~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
..+ ..++.+++.. +.|.+++.+|..-...+.++++.+.
T Consensus 282 ~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 282 LEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp SCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 877 4555555544 4576766555443456777776654
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.37 E-value=1.5e-14 Score=137.49 Aligned_cols=78 Identities=21% Similarity=0.165 Sum_probs=64.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+++++|+++++|++++|+||||||||||+++|+|.+ + .+|+|.++|.+....+....+++|+..++ .+||.|+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~---~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G---HQGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T---CCSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTH
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C---CCCeEEECCEeeeeeccCCCcceeccccc-cCCcHHH
Confidence 56899999999999999999999999999999999998 6 38999999876421111012799998888 8999999
Q ss_pred HHH
Q 045930 101 IAY 103 (661)
Q Consensus 101 l~~ 103 (661)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 965
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.36 E-value=2.5e-13 Score=127.72 Aligned_cols=99 Identities=19% Similarity=0.337 Sum_probs=73.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~-------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT-------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC--------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH--------
Confidence 456676 8999999999999999999999997653 23 11344443321100
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~ 181 (661)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66555
Q ss_pred HHHHHHHHHHHHhcCCE-EEEEecCCchH
Q 045930 182 AFFVVKILKNIAHDGRT-IISSIHQPSSE 209 (661)
Q Consensus 182 ~~~i~~~L~~la~~g~t-vi~s~Hq~~~~ 209 (661)
+..+.+.+.++.++|++ +|+++|.+..+
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQQ 128 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHHH
Confidence 88899999999888888 89999975443
No 130
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.36 E-value=2.5e-13 Score=130.79 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=43.4
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 045930 161 ILTRPQLLFLDEPTS-GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE 209 (661)
Q Consensus 161 L~~~P~lllLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~ 209 (661)
.+.+|++|+||||++ ++|+..+..+.+.+.+..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 345999999999985 9999999999999999888899999999998654
No 131
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.35 E-value=2.4e-14 Score=158.03 Aligned_cols=152 Identities=15% Similarity=0.191 Sum_probs=103.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-cc----------ccCeEEEEecCCCCC
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RL----------DYGGVAYVTQENIML 92 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~----------~~~~i~yv~Q~~~l~ 92 (661)
-+++|+++++|++++|+|+||||||||+++|+|++++. .|+|.++|.+. +. .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998753 79999976542 11 134689999998888
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh-hCC-CEEEE
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL-TRP-QLLFL 170 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~-~~P-~lllL 170 (661)
+.+||++++.++..-. .. .+ +++..|+.+.... +-..-+|++.+++++. ..| .+||.
T Consensus 360 p~~tV~e~l~~a~~~~----~D------vV--LIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARN----ID------VL--IADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTT----CS------EE--EECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcC----CC------EE--EEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 8899999998874311 10 00 1222233221111 1122357888888664 457 45666
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecC
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQ 205 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq 205 (661)
.++|+|.|.. +.++.+.+ -|.|.++.||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 6688886544 33455554 38899999994
No 132
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.35 E-value=3.4e-15 Score=143.78 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=88.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-cc-------cc-CeEE----EEecCCCCCCCCCHHHHH
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RL-------DY-GGVA----YVTQENIMLGTLTVRETI 101 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~-------~~-~~i~----yv~Q~~~l~~~lTV~E~l 101 (661)
++++|+|+||||||||++.|+|.+++.....|.|.++|.+. .. .+ +.++ +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999999865322379999998762 11 11 2455 888876654 110
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITE-MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLL-------FLDEP 173 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~ll-------lLDEP 173 (661)
..++....++++++. +. -.|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 ------------~~~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 ------------VSEEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------------CCHHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------------CChhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 001111135556655 43 36888875 59999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhcC
Q 045930 174 TSG---LDSAAAFFVVKILKNIAHDG 196 (661)
Q Consensus 174 tsG---LD~~~~~~i~~~L~~la~~g 196 (661)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34455667777776666654
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.33 E-value=1.2e-13 Score=146.40 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=98.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----------ccCeEEEEecCCCCCCCCCHHHH
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----------DYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----------~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
++|++++|+||||||||||++.|+|.+++. .|+|.++|.+... .+..+.+++|+..+.|.+||+|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999998763 7999999876421 12346799999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~ 180 (661)
+.++..... . . .+++..|+.+..+..+ ++|| .+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~--d--------~--vliDtaG~~~~~~~l~-----~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI--D--------V--VLIDTAGRSETNRNLM-----DEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC--S--------E--EEEEECCSCCTTTCHH-----HHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc--h--------h--hHHhhccchhHHHHHH-----HHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 987642110 0 0 0122233333222222 2243 38888888888888885553
Q ss_pred HHHHHHHHHHHHHh-cCCEEEEEecCC
Q 045930 181 AAFFVVKILKNIAH-DGRTIISSIHQP 206 (661)
Q Consensus 181 ~~~~i~~~L~~la~-~g~tvi~s~Hq~ 206 (661)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 456666777765 489999999963
No 134
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.32 E-value=5.9e-15 Score=157.23 Aligned_cols=160 Identities=23% Similarity=0.224 Sum_probs=106.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------cccCeEEEEecCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---------LDYGGVAYVTQENIM 91 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---------~~~~~i~yv~Q~~~l 91 (661)
+.+|+++|+++++|++++|+||||||||||+|+|+|.+.+. .|+|.+.|.+.. ..+++++|++|++.+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 46899999999999999999999999999999999988653 789988886542 123568999999877
Q ss_pred CCCC------------CHHHHHHHH-----------------------------HhcCCCCCCCHHHHH---HHHHHHHH
Q 045930 92 LGTL------------TVRETIAYS-----------------------------AHLRLPSNMNNEEIT---DVIEEAIT 127 (661)
Q Consensus 92 ~~~l------------TV~E~l~~~-----------------------------~~l~~~~~~~~~~~~---~~v~~~l~ 127 (661)
+... +++|.+... ..+.-+. ..++.+ +.+.+..+
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~ 196 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELAD 196 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCS
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhcccc
Confidence 6532 233332110 0000000 001100 01111111
Q ss_pred HcCCCccccccccCccccccCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 045930 128 EMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194 (661)
Q Consensus 128 ~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~ 194 (661)
.+.+ +..|.. ..+.+|+|++|++..+++++. +|++++ ||++|......+.+.|.++..
T Consensus 197 ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1222 122211 113579999999999999987 688887 999999999999999988754
No 135
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.30 E-value=8.4e-14 Score=145.20 Aligned_cols=128 Identities=15% Similarity=0.189 Sum_probs=87.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHh----c
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAH----L 107 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~----l 107 (661)
+++.+++|.||||||||||.+.|++.+.+ .| . ..+.+.+|+||+.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 57899999999999999999999998754 22 0 12346667999988865 88899887521 1
Q ss_pred C---CCCCCCHHHHHHHHHHHHHHcCCC--cc--ccccccCccccccCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCC
Q 045930 108 R---LPSNMNNEEITDVIEEAITEMGLE--DC--ADRLIGNWHWRGISGGEKKRLSIA--LEILTRPQLLFLDEPTSGLD 178 (661)
Q Consensus 108 ~---~~~~~~~~~~~~~v~~~l~~lgL~--~~--~d~~vg~~~~~~LSgGerqRvsIa--~aL~~~P~lllLDEPtsGLD 178 (661)
. .|.... .+...+.++.+.-. .. ....+. .....+||||+||+.+| +++ +|+|+|+|||++++|
T Consensus 94 ~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 94 QGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp SSSCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 1 122222 23455566665332 10 111111 12257999999999987 555 999999999999999
Q ss_pred HHH
Q 045930 179 SAA 181 (661)
Q Consensus 179 ~~~ 181 (661)
+..
T Consensus 167 ~~~ 169 (290)
T 1odf_A 167 PIL 169 (290)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
No 136
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.30 E-value=3.4e-12 Score=140.18 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=68.8
Q ss_pred cccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 145 RGISGGEKKRLSIALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++ .....||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 57999999999999999999999999999876688999999994 567889999999
Q ss_pred e
Q 045930 221 S 221 (661)
Q Consensus 221 ~ 221 (661)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.29 E-value=1.6e-13 Score=143.97 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=82.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE---CCeeccc-----ccCeEEEEecCCCCC-----CCCCH
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL---NGKKRRL-----DYGGVAYVTQENIML-----GTLTV 97 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~---~g~~~~~-----~~~~i~yv~Q~~~l~-----~~lTV 97 (661)
+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|+.... ..+.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~---~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL---RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC---CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC---cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 8776 3899998 8865321 113589999998553 78999
Q ss_pred HHHH--HHH----HhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHH
Q 045930 98 RETI--AYS----AHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 98 ~E~l--~~~----~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
|++ .|. ..++........+...+++++++.++|.+ ..+++++ .|||.++|++.||++
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----IIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----HTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence 887 443 11111111122233457899999999986 6777664 599988999999874
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=7.3e-12 Score=133.14 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=82.2
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCceeeEEEECCeecc---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCC
Q 045930 37 LAVMGPSGSGKSTLLDALAG-RLSGNVVMTGNVLLNGKKRR---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN 112 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG-~~~~~~~~~G~i~~~g~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 112 (661)
+.|.||||+|||||+++|++ +..+. .|++.++|.+.. .....+++++|.+.+.-..+ + .. .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---N 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---C
Confidence 89999999999999999999 55553 688888876532 12356788888764321100 0 00 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 045930 113 MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192 (661)
Q Consensus 113 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~l 192 (661)
......++.++++.+..++.+.. .+|| +..+|+++++|||++ ||..++..+.+.|++.
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~----------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDFQD----------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC---------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHhccccccc----------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 11112222333332222222111 2566 788999999999999 9999999999999886
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 193 AHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 193 a~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
. .+.++|+++|++......+.+|+ ..+.+.+++
T Consensus 162 ~-~~~~~Il~t~~~~~l~~~l~sR~------~~~~~~~~~ 194 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSPIIAPIKSQC------LLIRCPAPS 194 (354)
T ss_dssp T-TTEEEEEEESCSCSSCHHHHTTS------EEEECCCCC
T ss_pred c-CCCEEEEEeCCHHHHHHHHHhhc------eEEecCCcC
Confidence 4 36899999999854333333333 445555543
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.22 E-value=2.7e-14 Score=159.97 Aligned_cols=175 Identities=17% Similarity=0.174 Sum_probs=106.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee-ccc-ccCeEEEEecCCCCCCCCCHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRL-DYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~-~~~-~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|+++|.. ... ....++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45788999999999999999999999999999999999874 7999998864 221 234566666654322223444
Q ss_pred HHHHHHHhcCCC-----CCCCHHHHHH------------------HHHHHHHHcC-----CCc----cccccccCccccc
Q 045930 99 ETIAYSAHLRLP-----SNMNNEEITD------------------VIEEAITEMG-----LED----CADRLIGNWHWRG 146 (661)
Q Consensus 99 E~l~~~~~l~~~-----~~~~~~~~~~------------------~v~~~l~~lg-----L~~----~~d~~vg~~~~~~ 146 (661)
+.+..+.+.+ | ......+... .+.++++.+. +.. ..+..+ .....
T Consensus 324 ~~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~ 400 (511)
T 2oap_1 324 DLLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMW 400 (511)
T ss_dssp HHHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEE
T ss_pred HHHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEE
Confidence 4443322211 1 0111111111 1222333322 211 111110 01235
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE--EecCCchHHHhhc
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIIS--SIHQPSSEVFALF 214 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~--s~Hq~~~~i~~~~ 214 (661)
+|||||||+.++. + | |+|||+.....+++.|.++.++|+|+++ ++|+. .++...+
T Consensus 401 ~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 401 VRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp ESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred EeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 7999999877652 2 7 9999998777666777666666788875 78884 4555544
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.20 E-value=6.1e-11 Score=128.79 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=51.5
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhc-CCEEEEEecCCc----------
Q 045930 153 KRLSIALEIL--TRPQLLFLDEPTSGLDSAAA------------FFVVKILKNIAHD-GRTIISSIHQPS---------- 207 (661)
Q Consensus 153 qRvsIa~aL~--~~P~lllLDEPtsGLD~~~~------------~~i~~~L~~la~~-g~tvi~s~Hq~~---------- 207 (661)
+.+.-+.+++ .+|+++++||||+.+|+... .++++.|++++++ |.|||+++|...
T Consensus 260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g 339 (400)
T 3lda_A 260 RLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNP 339 (400)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------------
T ss_pred HHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccC
Confidence 3444444443 46999999999999997533 6688889999876 999999999821
Q ss_pred --------hHHHhhcCeEEEEeCCe
Q 045930 208 --------SEVFALFDDLFLLSGGE 224 (661)
Q Consensus 208 --------~~i~~~~D~v~lL~~G~ 224 (661)
..+...+|.++.|.+++
T Consensus 340 ~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 340 DPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --------CHHHHHCSEEEEEEECS
T ss_pred CCccCCchhHHHHhcceEEEEEecC
Confidence 23467789999998664
No 141
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.19 E-value=4.3e-14 Score=154.43 Aligned_cols=133 Identities=23% Similarity=0.271 Sum_probs=90.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc---------cCeEEEEe------
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD---------YGGVAYVT------ 86 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~---------~~~i~yv~------ 86 (661)
.+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.+.+.... .+.+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 366666 4 3799999999999999999999999998763 79999887664311 12345544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 87 ---QENIM--LGT----LTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 87 ---Q~~~l--~~~----lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
|++.. ++. .|+.+++.++..-++. .........+.++ .|..+|+.+.. .. ..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~~--~~-----~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPFL--IS-----SSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHHH--HH-----HHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHHH--HH-----HHHHHHHHHH--
Confidence 88754 344 6899998876421100 0000111122233 46778887643 22 3699999999
Q ss_pred HHHHHhhCCCEEE
Q 045930 157 IALEILTRPQLLF 169 (661)
Q Consensus 157 Ia~aL~~~P~lll 169 (661)
||++|+.+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999875
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.17 E-value=1.5e-13 Score=135.97 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=83.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP 110 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 110 (661)
.++|++++|+||||||||||+++|+|.+++. | ..+++|++++..++. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 5799999999999999999999999987641 2 135677776654432 222221100000111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 045930 111 SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA-LEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189 (661)
Q Consensus 111 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa-~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L 189 (661)
....... ..+.+..+...+..+....+ +..+.|+||+||++++ ++++.++.++++|||.-
T Consensus 81 ~~~~~~~----~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDFEG----FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCHHH----HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhHHH----HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 1112222 22333332111112222222 1235799999999988 77788888888888741
Q ss_pred HHHHhcCCEEEEEecCCchHHHhhcCe
Q 045930 190 KNIAHDGRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 190 ~~la~~g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
.++.+.--.++++.++....+..+..|
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 111222235666766643335556666
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.17 E-value=3.2e-14 Score=153.94 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=119.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC------C--C-CceeeEEEECCeecc------cccCe---EEEEecCCCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLS------G--N-VVMTGNVLLNGKKRR------LDYGG---VAYVTQENIM 91 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~------~--~-~~~~G~i~~~g~~~~------~~~~~---i~yv~Q~~~l 91 (661)
.+++|+.++|+|+||||||||+|+|+|... | . ....|.+.++|.... ...+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567999999999999999999999999321 0 0 124799999884321 11122 3477888888
Q ss_pred CCCCCHHHHH--HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCC--CE
Q 045930 92 LGTLTVRETI--AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRP--QL 167 (661)
Q Consensus 92 ~~~lTV~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P--~l 167 (661)
.+..+..|++ .|...++. ++.++..+...+ |.. +..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 8887776655 44433321 111111122211 121 12356553 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEecCCchHHHhhcCeEE-EEeCC-eEEEecCCCC
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSIHQPSSEVFALFDDLF-LLSGG-ETVYFGEAKS 233 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~l-a~~g~tvi~s~Hq~~~~i~~~~D~v~-lL~~G-~~v~~G~~~~ 233 (661)
+++|||+.++|+.......+.++.+ ++.|.||+ +|+. .++.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 77787864 8984 68899999999 99999 9988887654
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.10 E-value=5.6e-13 Score=141.64 Aligned_cols=166 Identities=21% Similarity=0.204 Sum_probs=106.5
Q ss_pred cceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCCC-ceeeEEEECCeecc-----cccCeEEEEec
Q 045930 21 RRLLNGLTGYAEPA-------RILAVMGPSGSGKSTLLDALAGRLSGNV-VMTGNVLLNGKKRR-----LDYGGVAYVTQ 87 (661)
Q Consensus 21 ~~iL~~vs~~i~~G-------e~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~i~~~g~~~~-----~~~~~i~yv~Q 87 (661)
+.+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.+.. .....+.+++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 46889999999887 8999999999999999999999863221 24566555544321 12457999999
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCC
Q 045930 88 ENIMLGTLTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ 166 (661)
Q Consensus 88 ~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~ 166 (661)
.+.+.+ ++.|++.......... -.......+.++..+..++|.. +++.++ .||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~-----~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSG-----LLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGG-----GSCHHHHTTCSEE--------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcc-----cCCHHHHHhcCce--------
Confidence 887765 7888885543321100 0011222344555666667655 555554 5999999998655
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCe
Q 045930 167 LLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 167 lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
.+||+.+..++.++|++.++. | +.|++ +.+..++++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAKR 211 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHT
T ss_pred --------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHh
Confidence 788888999999999998764 4 24663 344455543
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.07 E-value=7.1e-12 Score=131.27 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=68.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE---CCeeccc-----ccCeEEEEecCCC-----------
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL---NGKKRRL-----DYGGVAYVTQENI----------- 90 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~---~g~~~~~-----~~~~i~yv~Q~~~----------- 90 (661)
.+.+|++++|+||||||||||||+|+|+.++. +|+|.+ +|+.... ..+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999998874 899999 7865421 1235899999874
Q ss_pred -----CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 045930 91 -----MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIG 140 (661)
Q Consensus 91 -----l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg 140 (661)
++|.+|| ||+.|.. +. ...+...+++++++.+||. +..++++.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 5889999 9888752 21 1123345789999999995 66777653
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.05 E-value=2e-11 Score=128.03 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=68.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE---CCeecccc---cC-eEEEEecCCCCCC----CCCH
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL---NGKKRRLD---YG-GVAYVTQENIMLG----TLTV 97 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~---~g~~~~~~---~~-~i~yv~Q~~~l~~----~lTV 97 (661)
+++.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|+..... .+ .++|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~---~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc---cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 45678999999999999999999999999876 4899988 67643211 11 1799999987655 6899
Q ss_pred HHHHH--HH------HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 98 RETIA--YS------AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 98 ~E~l~--~~------~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
|++. |. ..|+........+....++++++.++|.+.+.... ..++.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 32 11232211122233456899999999987443332 2477777763
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.01 E-value=4.5e-14 Score=138.89 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=42.3
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 157 IAL-EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 157 Ia~-aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
.++ +++.+|++++|||+|+++|..+...+.+.|.+..++ +...|.+ ..+|.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 445 677788888889999999999999999998887654 2234521 56899887653
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.98 E-value=1.9e-09 Score=107.90 Aligned_cols=60 Identities=22% Similarity=0.130 Sum_probs=45.6
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHh-cCCEEEEEecCCchH-------HHhhcCeEEEEeC
Q 045930 163 TRPQLLFLDEPTSGL--DSAAAFFVVKILKNIAH-DGRTIISSIHQPSSE-------VFALFDDLFLLSG 222 (661)
Q Consensus 163 ~~P~lllLDEPtsGL--D~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~-------i~~~~D~v~lL~~ 222 (661)
.+|+++++|||++.+ |.....+.+..|.++++ .|.|||+++|..... +.+.+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 65555666666776654 589999999986431 4678899999964
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.96 E-value=2e-13 Score=141.24 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=86.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCC-CCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQEN-IMLGT 94 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~-~l~~~ 94 (661)
..+++++++.+++| ++|.||||||||||+++|+|...+ |.+.++|.+... ..+.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45889999999999 999999999999999999998653 688888865321 123466777764 44555
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 045930 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT 174 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPt 174 (661)
+++.|++...+..+ .. ...+ .+.+..++.+ ..|||||+||+.|++++..+|++| ||++
T Consensus 106 i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-------SD--RETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-------CC--Ccch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 66666665322111 00 0000 1223344444 469999999999999999999986 8886
Q ss_pred C
Q 045930 175 S 175 (661)
Q Consensus 175 s 175 (661)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.95 E-value=1.5e-09 Score=119.94 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=112.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
..|+++.+-+++|+++.|.|+||+|||||+..+++..... .| ..+.|+.-+ ++..+..
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l~ 248 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQLV 248 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHHH
Confidence 5688888889999999999999999999999999864320 12 123444332 2222221
Q ss_pred HH--HHh-------cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEE
Q 045930 102 AY--SAH-------LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFL 170 (661)
Q Consensus 102 ~~--~~~-------l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllL 170 (661)
.- +.. ++. ...+.++ .+++.+.++.++..+..-... .++|.+|.+ +.++.++ .+|+++++
T Consensus 249 ~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d~-----~~~s~~~i~--~~~~~l~~~~~~~livI 319 (454)
T 2r6a_A 249 MRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIYIDDT-----PSIRVSDIR--AKCRRLKQESGLGMIVI 319 (454)
T ss_dssp HHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEECC-----TTCCHHHHH--HHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEECC-----CCCCHHHHH--HHHHHHHHHcCCCEEEE
Confidence 11 000 111 1233333 335556666654433221111 258999987 5667776 68999999
Q ss_pred eCCCCCCCH--------HHHHHHHHHHHHHHhc-CCEEEEEec---------C--Cc-------hHHHhhcCeEEEEeCC
Q 045930 171 DEPTSGLDS--------AAAFFVVKILKNIAHD-GRTIISSIH---------Q--PS-------SEVFALFDDLFLLSGG 223 (661)
Q Consensus 171 DEPtsGLD~--------~~~~~i~~~L~~la~~-g~tvi~s~H---------q--~~-------~~i~~~~D~v~lL~~G 223 (661)
|+++...+. .....+.+.|+.+|++ |.+||+++| + |. ..+...+|.|++|..+
T Consensus 320 D~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 320 DYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp ECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 999987742 3446788889999876 999999999 2 42 1477889999999877
Q ss_pred eE
Q 045930 224 ET 225 (661)
Q Consensus 224 ~~ 225 (661)
+.
T Consensus 400 ~~ 401 (454)
T 2r6a_A 400 DY 401 (454)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.95 E-value=7.4e-12 Score=131.57 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=67.1
Q ss_pred ceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEE---CCeeccc
Q 045930 22 RLLNGLTGYA-------------------EPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLL---NGKKRRL 77 (661)
Q Consensus 22 ~iL~~vs~~i-------------------~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~---~g~~~~~ 77 (661)
++++++|+.+ ++|+++||+||||||||||+++|+|++. + .+|+|.+ +|.....
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~---~~G~i~vi~~d~~~~~~ 125 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP---EHRRVELITTDGFLHPN 125 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST---TCCCEEEEEGGGGBCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC---CCCeEEEEecCCccCcH
Confidence 5788899887 8999999999999999999999999876 5 3799998 8765321
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
.++.++++ |+..+++.+|+.+++.+...++
T Consensus 126 ~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 126 QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 12346788 8777788899999998876654
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.86 E-value=8.5e-10 Score=115.68 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=78.4
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHh
Q 045930 27 LTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAH 106 (661)
Q Consensus 27 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 106 (661)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+... . ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r----~-------------~a~-------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR----A-------------AAI-------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC----H-------------HHH--------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc----H-------------HHH--------
Confidence 45567899999999999999999999999987642 4566654432110 0 001
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 045930 107 LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL---SIALEILTRPQLLFLDEPTSGLDSAAAF 183 (661)
Q Consensus 107 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv---sIa~aL~~~P~lllLDEPtsGLD~~~~~ 183 (661)
+.+..+.+.+|+... ...|||+.+++ ++++++..+|+++|+|||.. .....
T Consensus 149 -------------eqL~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 149 -------------EQLKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp -------------HHHHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred -------------HHHHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 112334455565421 23689999999 89999999999999999974 34455
Q ss_pred HHHHHHHHHHh
Q 045930 184 FVVKILKNIAH 194 (661)
Q Consensus 184 ~i~~~L~~la~ 194 (661)
.+++.|+++.+
T Consensus 203 ~l~~eL~~l~~ 213 (306)
T 1vma_A 203 NLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.84 E-value=5.4e-11 Score=116.24 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=45.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-----ccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-----RLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-----~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
|+++++|++++|+||||||||||+++|+|+.+ . +.+++... ......++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-E------IKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-S------EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-C------eEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999864 2 33333321 11234688999987666555554443
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.83 E-value=5.1e-09 Score=109.24 Aligned_cols=118 Identities=17% Similarity=0.098 Sum_probs=81.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHH
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYS 104 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 104 (661)
+++++. +|++++++|+||+||||++..|++.+.+. .|+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH----------------hHH-HHH---
Confidence 678888 99999999999999999999999987542 56676655432100 000 000
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q 045930 105 AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP-TSGLDSAAAF 183 (661)
Q Consensus 105 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP-tsGLD~~~~~ 183 (661)
..+.+..|+.-..... +-.-.+.+|..|+.+...+++++|+||| +.|+|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~~~-------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVMD-------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEECCT-------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEcCC-------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 1122344554321110 1234456788999988899999999999 9999988888
Q ss_pred HHHHHHHHH
Q 045930 184 FVVKILKNI 192 (661)
Q Consensus 184 ~i~~~L~~l 192 (661)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 877776665
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.83 E-value=1.2e-10 Score=129.70 Aligned_cols=175 Identities=15% Similarity=0.136 Sum_probs=102.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCC--CHHHHH
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL--TVRETI 101 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG--~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~l--TV~E~l 101 (661)
.+++.+.++..++|.|++||||||+|++|.. +... ..|++.+.+.+.+.. . .+....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~---~p~~v~l~liDpK~~----e--l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA---QPEDVRFIMIDPKML----E--LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEEEECCSSS----G--GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC---CCceEEEEEECCchh----h--hhhhccCCcccceeecCH
Confidence 4778888999999999999999999999875 2222 134444433322110 0 0000011111 121222
Q ss_pred HHHHh-cCCCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCccccccCHHHHHHH----------HHHHHHhhCCC-E
Q 045930 102 AYSAH-LRLPSNMNNEEITDVIEEAITEMGLEDCADR--LIGNWHWRGISGGEKKRL----------SIALEILTRPQ-L 167 (661)
Q Consensus 102 ~~~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~--~vg~~~~~~LSgGerqRv----------sIa~aL~~~P~-l 167 (661)
..+.. ++ ...++.++|. ++++..|+.+..+. ++. ..+|+||+||. .+++++...|. +
T Consensus 230 ~~a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 230 KDAANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 21111 11 1134555554 77888998775443 121 24788887752 34556677898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhc----CCEEEEEecCCchH-----HH-hhcCeEEE
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNIAHD----GRTIISSIHQPSSE-----VF-ALFDDLFL 219 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~la~~----g~tvi~s~Hq~~~~-----i~-~~~D~v~l 219 (661)
+++||++.-+|.. ...+.+.|.++++. |.++|+++|.|+.+ +. ++.+||.+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 8999999988843 34566666666543 67999999999732 33 44455554
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.81 E-value=4.9e-09 Score=109.42 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=88.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS 111 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~ 111 (661)
++|++++++|||||||||+++.|++.+.+. +| +.+.++.+|.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 579999999999999999999999987531 34 24677777652 3355665554321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 045930 112 NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191 (661)
Q Consensus 112 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~ 191 (661)
..|+.... ..+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 159 ----------------~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 12332110 0122 22344444 45999999999 999998766544443333
Q ss_pred HH---hcCCEEEE-EecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 192 IA---HDGRTIIS-SIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 192 la---~~g~tvi~-s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
+. .++.++++ ++|+. .++.+.+|++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 22334555 47874 567788887766666777654
No 157
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.80 E-value=4.9e-09 Score=111.92 Aligned_cols=148 Identities=20% Similarity=0.287 Sum_probs=89.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
+-+++|+++.|.||||||||||+..++..... .| ..+.|+.-+...-+ . .+.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~----~g-------------~~vlyi~~E~~~~~------~--~a~--- 107 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQA----AG-------------GIAAFIDAEHALDP------E--YAK--- 107 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----TT-------------CCEEEEESSCCCCH------H--HHH---
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----CC-------------CeEEEEECCCCcCH------H--HHH---
Confidence 36899999999999999999998888754321 11 23556655432111 0 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC---------
Q 045930 109 LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTR--PQLLFLDEPTSGL--------- 177 (661)
Q Consensus 109 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~--P~lllLDEPtsGL--------- 177 (661)
.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 108 -------------------~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 108 -------------------KLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp -------------------HTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred -------------------HcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 122210 000111 11233 2345678888765 9999999999998
Q ss_pred -CH---HHHHHHHHHHHHH---Hh-cCCEEEEEecCCch---------------HHHhhcCeEEEEeCCeEEEecC
Q 045930 178 -DS---AAAFFVVKILKNI---AH-DGRTIISSIHQPSS---------------EVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 178 -D~---~~~~~i~~~L~~l---a~-~g~tvi~s~Hq~~~---------------~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|+ ..+..+.+.+++| ++ .|.|||++.|.... .+..++|.++.+..++++..|+
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2233445555555 33 59999999996421 2567899999998887665554
No 158
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.78 E-value=1.1e-10 Score=133.82 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=99.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCC----------
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI---------- 90 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~---------- 90 (661)
..+++++++.+++|+.++|+||||+|||||+++|++..++. ..|.+.+++.+.......++++++...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~ 124 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREK 124 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHh
Confidence 46889999999999999999999999999999999998763 248888888765544566889887531
Q ss_pred ------------CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 91 ------------MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 91 ------------l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
.+..+++.+|+.....-..+...- .+...... +.+|.-+...... .++|+|++|++..+
T Consensus 125 ~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v-~~~~~~~~---~L~G~~~~~~~~~-----g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 125 AKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI-DATGAHAG---ALLGDVRHDPFQS-----GGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHTCC-----------CCCEEEECCTTCSSCCEE-ECTTCCHH---HHHCEECCCCC---------CCCCGGGGEECC
T ss_pred hccchhhhhhcccccccccccceeeccccCCCCCEE-EcCCCCHH---hcCceEEechhhc-----CCccccccccccCc
Confidence 111111111111000000000000 00000011 1112111111111 36999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~ 191 (661)
.....++.+||+||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 898888877777764
No 159
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.73 E-value=3.5e-09 Score=117.22 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=46.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR 75 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~ 75 (661)
..+|+|+|+++++ |+++|+|||||||||||++|+|++++. +|+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 4589999999999 999999999999999999999998874 89999999754
No 160
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.71 E-value=7.4e-12 Score=129.19 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=81.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----cccCeEEEEecCCC-CCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----LDYGGVAYVTQENI-MLGT 94 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~~~~~i~yv~Q~~~-l~~~ 94 (661)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.. ...+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 35788999999999 89999999999999999999764 578888875421 11234566777643 4566
Q ss_pred CCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCE
Q 045930 95 LTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~l 167 (661)
+++.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 77777775433211000 001122233333332 24899999999999999999876
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.67 E-value=1.1e-11 Score=125.91 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=79.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----cccCeEEEEecCC-CCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----LDYGGVAYVTQEN-IMLGT 94 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~~~~~i~yv~Q~~-~l~~~ 94 (661)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.. ...+.+++++|+. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 35788999999999 89999999999999999999764 577888775421 1123355667753 24566
Q ss_pred CCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCE
Q 045930 95 LTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~l 167 (661)
+++.|++......+.. .....++..+.+++++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 6777777433221110 0011122233333332 24889999999999999999976
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.64 E-value=2.5e-08 Score=96.46 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~l 192 (661)
.+.+.+|++++.+|+++++| ||++|..+..++++.|.+.
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999 9999999999999888653
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.45 E-value=4.4e-08 Score=97.85 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=23.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-GRLSG 60 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G~~~~ 60 (661)
.+..+++|+++++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45788999999999999999999999999999999 98753
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.43 E-value=2.8e-10 Score=122.61 Aligned_cols=144 Identities=16% Similarity=0.133 Sum_probs=81.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCC-CCCCCCHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI-MLGTLTVRE 99 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~-l~~~lTV~E 99 (661)
..+|+++|+.+++|++++|.||||||||||+++|+|.. .|++..-..+.......+++++|... ++..++...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHH
Confidence 46899999999999999999999999999999999863 46655411111110113556666653 233333221
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---ccc--cc--CccccccCHHHHHHHHHHHHHhhCCCEE
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITE---MGLED-CA---DRL--IG--NWHWRGISGGEKKRLSIALEILTRPQLL 168 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---d~~--vg--~~~~~~LSgGerqRvsIa~aL~~~P~ll 168 (661)
.+ .-++... ........+.+.++. +.+.. .. +.+ .| +.....+++|+++|+..+++++.+|+++
T Consensus 230 ~~----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 11 0000000 010011223333331 11110 00 100 01 1122458999999999888888999998
Q ss_pred E-EeCCCC
Q 045930 169 F-LDEPTS 175 (661)
Q Consensus 169 l-LDEPts 175 (661)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999997
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.43 E-value=1.9e-07 Score=103.45 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hcCCEEEEEecCCc
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEP----------TSGLDSAAAFFVVKILKNIA----HDGRTIISSIHQPS 207 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEP----------tsGLD~~~~~~i~~~L~~la----~~g~tvi~s~Hq~~ 207 (661)
|++++|..++++....|.+||+||+ ++|.|......+.++|..+- +.+..||.++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44677776666777777663 24678999999973
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.42 E-value=2.6e-08 Score=106.97 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=87.9
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHcCCCCC--------CceeeEEEECCeecccccCeEEEEecCCCCCCCCCHH---HH
Q 045930 33 PARI-LAVMGPSGSGKSTLLDALAGRLSGN--------VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR---ET 100 (661)
Q Consensus 33 ~Ge~-~aI~GpsGsGKSTLL~~LaG~~~~~--------~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~---E~ 100 (661)
.|-. ++|+|++|||||||+|.|+|..... -...|.+.++|.+... ....|++.+.+. ..|. .+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHH
Confidence 3444 9999999999999999999975310 0246889998865321 122454444221 1121 12
Q ss_pred HHHHHh--c--CC-CCCCCH---HHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH----HHH-hhCCCE
Q 045930 101 IAYSAH--L--RL-PSNMNN---EEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA----LEI-LTRPQL 167 (661)
Q Consensus 101 l~~~~~--l--~~-~~~~~~---~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa----~aL-~~~P~l 167 (661)
+..... + .. ...... .+..+.+.++++.+++.+..--.++| ....+|+|+++|+.++ +++ ..+|++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 211110 0 00 001111 22334467788888876544222232 2234788888988887 444 334444
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNIAH 194 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~la~ 194 (661)
+|+|++|......+.+.|.++..
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988754
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.38 E-value=1.5e-07 Score=100.54 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=30.5
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 23 LLNGLT--GYAEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 23 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-|+.+- +=+++|+++.|.||||||||||+..+++...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344443 3699999999999999999999999998653
No 168
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.37 E-value=1.1e-06 Score=92.34 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=31.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.-|+++.+-+++|+++.|.|++|+|||||+..++..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457777777999999999999999999998888753
No 169
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.37 E-value=4.1e-07 Score=106.84 Aligned_cols=76 Identities=22% Similarity=0.211 Sum_probs=59.7
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEE-ecCCchHHHhhcCeEEEE
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTS-GLDSAAAFFVVKILKNIAHDGRTIISS-IHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~s-~Hq~~~~i~~~~D~v~lL 220 (661)
+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.....+.++|++| ||++ ..+.+++++.-++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~vi 265 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPLL 265 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCEE
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCcc
Confidence 34589999999999999999999999999996 999887777776666554456778775 8875 5677788754333
No 170
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.35 E-value=3.9e-07 Score=96.61 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=87.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.=+ ++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSlE------ms----- 85 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSLE------MS----- 85 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEESS------SC-----
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeCC------CC-----
Confidence 457777777999999999999999999999888764321 11 224453322 23
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~ 181 (661)
.++...++......+.+.+..+ | .||.+|.+|+..|...+.++++++.|+|...
T Consensus 86 -------------~~ql~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s----- 139 (338)
T 4a1f_A 86 -------------AEQLALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR----- 139 (338)
T ss_dssp -------------HHHHHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----
T ss_pred -------------HHHHHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----
Confidence 3333333333333334433332 2 4999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHhc--CCEEEEEec
Q 045930 182 AFFVVKILKNIAHD--GRTIISSIH 204 (661)
Q Consensus 182 ~~~i~~~L~~la~~--g~tvi~s~H 204 (661)
..++...++++.++ |..+|++-|
T Consensus 140 i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 33666777777654 567776643
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.33 E-value=3e-07 Score=89.15 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la 193 (661)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.32 E-value=1.7e-08 Score=98.73 Aligned_cols=46 Identities=33% Similarity=0.382 Sum_probs=31.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR 75 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~ 75 (661)
+..+-....++|++++|+||||||||||+++|++.+ |.+.++|...
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 333344667899999999999999999999999864 6677777543
No 173
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.32 E-value=1.7e-08 Score=101.23 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=40.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-------------cccCeEEEEecC
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-------------LDYGGVAYVTQE 88 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-------------~~~~~i~yv~Q~ 88 (661)
++++.+ ++++|+|||||||||||++|+|.+.+. +|+|.++|.+.. ..+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999998874 788988886531 013568888884
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.26 E-value=1e-06 Score=94.05 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=47.2
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe--cCC
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLD-EPTSGLDSAAAFFVVKILKNIAHDGRTIISSI--HQP 206 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLD-EPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~--Hq~ 206 (661)
.+|+||+|++. +.+...++-++++| +|++|+|......+++.+++... +..+|++. ||.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 58999998876 55556778889999 99999999998888877776654 67777777 774
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.17 E-value=1.4e-07 Score=96.07 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=36.1
Q ss_pred eEEEEEE-EEEeecCCcccccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 2 YLVWEEV-TVVVPNFGSGPTRRLLNGLTGYAEP---ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 2 ~l~~~~l-~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.|+++|+ ++.+. ..+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3678888 87662 135799999999999 9999999999999999999999865
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.16 E-value=1.3e-06 Score=95.94 Aligned_cols=103 Identities=8% Similarity=0.153 Sum_probs=67.8
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE-EeCCeEEEecCCCC--hhH--
Q 045930 163 TRPQLLFLDEPTSGLDS-AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFL-LSGGETVYFGEAKS--APT-- 236 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~-~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~l-L~~G~~v~~G~~~~--~~~-- 236 (661)
.+|++|++||+..-.+. .++..+...+..+.+.|+.||+++|.|..++..+.+++.- +..|.++..++++. ..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887664 6777888999988888999999999975544334444433 45688888787764 222
Q ss_pred --HHHhcCCCCCCCCCchhHHHHhhccCchhHH
Q 045930 237 --FFAEAGFPCPTRRNPSDHFLRCINSDFDVVT 267 (661)
Q Consensus 237 --~f~~~g~~~~~~~npad~~~~~~~~~~~~~~ 267 (661)
.....|...++ ...+++......+.+.+.
T Consensus 273 ~~~~~~~~~~i~~--e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 273 RKMLEIEHGELPE--EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHTCCCCT--THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHcCCCCCH--HHHHHHHHhcCCCHHHHH
Confidence 23334555443 345666655555544433
No 177
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.07 E-value=9e-06 Score=86.56 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=35.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH---DGRTIISSIHQP 206 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~---~g~tvi~s~Hq~ 206 (661)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888877665 577899999997
No 178
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=1.8e-06 Score=84.09 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=24.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 19 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+...+++|||+++++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999999999999999999865
No 179
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.03 E-value=1.9e-08 Score=112.11 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=79.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCCC-CCCCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQENI-MLGTL 95 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~~-l~~~l 95 (661)
.+++++++.+++| ++|.||||+|||||+++|++... .+.+.++|.+... ..+.+..++|+.. ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 4678899999999 89999999999999999999764 4677787754311 0122444555432 33444
Q ss_pred CHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 045930 96 TVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT 174 (661)
Q Consensus 96 TV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPt 174 (661)
.+.|++......+.. .....++..+.+++++. .|||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 444444322111100 00112333444444443 3778888888888888888887 78775
No 180
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.03 E-value=2e-06 Score=82.10 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=32.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
+++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7899999999 9999999999999999999987654
No 181
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.03 E-value=7.7e-07 Score=93.75 Aligned_cols=76 Identities=18% Similarity=0.107 Sum_probs=53.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------cc-----cCeEEEE-ecC
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---------LD-----YGGVAYV-TQE 88 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---------~~-----~~~i~yv-~Q~ 88 (661)
++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+.. .. +..+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 46899999999999999999999999999999987642 577877654421 01 3457888 665
Q ss_pred CCCCCCCCHHHHHH
Q 045930 89 NIMLGTLTVRETIA 102 (661)
Q Consensus 89 ~~l~~~lTV~E~l~ 102 (661)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444334444443
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.98 E-value=3.1e-06 Score=82.12 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=27.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
++++|++++|+||||||||||+++|++...+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998844
No 183
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.97 E-value=5.8e-05 Score=80.08 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=79.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHL 107 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l 107 (661)
+-+++|+++.|.||+|+|||||+..++... .+. ...| ....+.|+.-+..+ ...+-.....++
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~-~~gg-----------~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG-AGGY-----------PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB-TTTB-----------CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc-ccCC-----------CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 568999999999999999999999988742 110 0001 01346677665432 222222222222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH--
Q 045930 108 RLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE-KKRLSIALEIL----TRPQLLFLDEPTSGLDSA-- 180 (661)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe-rqRvsIa~aL~----~~P~lllLDEPtsGLD~~-- 180 (661)
. ... +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 181 g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 N----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp T----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred C----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1 111 1223322111 1123332 34555566666 569999999999865432
Q ss_pred ----------HHHHHHHHHHHHHhc-CCEEEEEecCC
Q 045930 181 ----------AAFFVVKILKNIAHD-GRTIISSIHQP 206 (661)
Q Consensus 181 ----------~~~~i~~~L~~la~~-g~tvi~s~Hq~ 206 (661)
...++++.|++++++ |.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 134566667777765 88988887753
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.96 E-value=2.2e-05 Score=83.77 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=39.6
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEec
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG-RTIISSIH 204 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g-~tvi~s~H 204 (661)
-++.++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| ++|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999887774334445443 44566677776655 45555544
No 185
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.95 E-value=6.8e-06 Score=85.64 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=83.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM 113 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 113 (661)
+..++|+|++|+|||||+|.|.|.... + ..+.+.....+..+++.+++..+ ++.| .| +.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~-------i-~s~~~~tTr~~~~gi~~~~~~~i---~~iD---------Tp-G~ 66 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKIS-------I-TSRKAQTTRHRIVGIHTEGAYQA---IYVD---------TP-GL 66 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEE-------E-CCCCSSCCSSCEEEEEEETTEEE---EEES---------SS-SC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc-------c-cCCCCCcceeeEEEEEEECCeeE---EEEE---------Cc-CC
Confidence 348999999999999999999996311 0 11112111234467777654211 0000 11 11
Q ss_pred CHHHHHHHHHHHHHHc---CCCccccccc--cCccccccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHH
Q 045930 114 NNEEITDVIEEAITEM---GLEDCADRLI--GNWHWRGISGGEKKRLSIALEIL--TRPQLLFLDEPTSGLDSAA-AFFV 185 (661)
Q Consensus 114 ~~~~~~~~v~~~l~~l---gL~~~~d~~v--g~~~~~~LSgGerqRvsIa~aL~--~~P~lllLDEPtsGLD~~~-~~~i 185 (661)
.. +......+.+... .+. ..|-.+ -+ . ..+|+|++ .+++.+. ..|.++++ +.+|... ...+
T Consensus 67 ~~-~~~~~l~~~~~~~~~~~l~-~~D~vl~Vvd-~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 67 HM-EEKRAINRLMNKAASSSIG-DVELVIFVVE-G-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp CH-HHHHHHHHHHTCCTTSCCC-CEEEEEEEEE-T-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred Cc-cchhhHHHHHHHHHHHHHh-cCCEEEEEEe-C-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 10 0011111111110 111 111111 01 1 12888886 4566666 67999999 7899876 6677
Q ss_pred HHHHHHHHhc-CC--EEEEEecCCchHHHhhcCeEE
Q 045930 186 VKILKNIAHD-GR--TIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 186 ~~~L~~la~~-g~--tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
.+.++++++. |. .+.++.|+- ..+..++|.+.
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 8888888764 43 566777774 45777777654
No 186
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.93 E-value=4e-07 Score=88.80 Aligned_cols=50 Identities=32% Similarity=0.384 Sum_probs=40.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEE--EECCee
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV--LLNGKK 74 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i--~~~g~~ 74 (661)
....+.++...++|++++|+||||||||||+++|++.+.. .|.+ .++|..
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~ 63 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDN 63 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCch
Confidence 3456677777899999999999999999999999998742 4655 676654
No 187
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.93 E-value=2.4e-06 Score=82.27 Aligned_cols=27 Identities=44% Similarity=0.716 Sum_probs=24.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998763
No 188
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.92 E-value=7.5e-07 Score=90.44 Aligned_cols=62 Identities=24% Similarity=0.157 Sum_probs=42.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCceeeEEE--------ECCeecc------cccCeEEE
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA---GRLSGNVVMTGNVL--------LNGKKRR------LDYGGVAY 84 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La---G~~~~~~~~~G~i~--------~~g~~~~------~~~~~i~y 84 (661)
.++++.+ ++|++++|+|||||||||++++|+ |...+ .+|.+. .+|.+.. ...+.+++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 91 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDV 91 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCE
Confidence 3455544 789999999999999999999999 87654 478887 6776542 11345778
Q ss_pred EecCC
Q 045930 85 VTQEN 89 (661)
Q Consensus 85 v~Q~~ 89 (661)
++|++
T Consensus 92 ~~~~~ 96 (252)
T 4e22_A 92 RFVSQ 96 (252)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 87753
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.92 E-value=4.9e-05 Score=78.24 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----cCCEEEEEecCCc---hHH
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA----------AAFFVVKILKNIAH----DGRTIISSIHQPS---SEV 210 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~----------~~~~i~~~L~~la~----~g~tvi~s~Hq~~---~~i 210 (661)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777888888899999999998766532 22233444443321 2346778888753 233
Q ss_pred HhhcCeEE
Q 045930 211 FALFDDLF 218 (661)
Q Consensus 211 ~~~~D~v~ 218 (661)
..-||+.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 44455543
No 190
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.91 E-value=1.3e-07 Score=99.57 Aligned_cols=39 Identities=31% Similarity=0.261 Sum_probs=33.2
Q ss_pred cceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 21 RRLLNGLTGYAEPAR------ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge------~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+..|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456777777777766 999999999999999999999875
No 191
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.91 E-value=1.2e-06 Score=85.49 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH-HHhhcCeEEEEe
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE-VFALFDDLFLLS 221 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~-i~~~~D~v~lL~ 221 (661)
+.|+.+|..++.....+|+.+.++ ++.+++.....+.+.++.. .+.+||+.+|...+. ....||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 578888888888888877654332 2344555444444433322 356888888875321 256788888775
No 192
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.90 E-value=4.3e-06 Score=80.15 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=29.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL 70 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~ 70 (661)
.+|++++|+||||||||||++.|++..++. ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 379999999999999999999999987532 3455443
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.88 E-value=9.5e-05 Score=77.70 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=79.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHL 107 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l 107 (661)
+-+++|+++.|.||+|+|||||+..++... .+. ..| |. ...+.|+.-+..+ ...+-.....++
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 568999999999999999999999888643 210 011 10 1345676655432 122222222222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH----
Q 045930 108 RLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG-EKKRLSIALEIL---TRPQLLFLDEPTSGLDS---- 179 (661)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgG-erqRvsIa~aL~---~~P~lllLDEPtsGLD~---- 179 (661)
. ...+ ++++.+- +. +..+.. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 166 g----~~~~-------~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 166 G----LDID-------NVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp T----CCHH-------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred C----CCHH-------HHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1 1111 1222111 10 112333 235677778888 57999999999875432
Q ss_pred ----HH----HHHHHHHHHHHHhc-CCEEEEEecC
Q 045930 180 ----AA----AFFVVKILKNIAHD-GRTIISSIHQ 205 (661)
Q Consensus 180 ----~~----~~~i~~~L~~la~~-g~tvi~s~Hq 205 (661)
.. ..++++.|++++++ |.+||++.|-
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 24556667777665 8899988774
No 194
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.82 E-value=4.5e-06 Score=83.33 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=33.9
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee
Q 045930 27 LTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74 (661)
Q Consensus 27 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~ 74 (661)
-++..++|++++|.|+||||||||+++|+|. .|+|.+.+.+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 3445579999999999999999999999997 3667777665
No 195
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.80 E-value=7e-05 Score=82.25 Aligned_cols=171 Identities=14% Similarity=0.168 Sum_probs=97.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
.-|+.+.+-+++|+++.|.|++|+|||||...++...... .| ..+.|+.=+ ++..+..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSLE------MPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEESS------SCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEECC------CCHHHHH
Confidence 3567777779999999999999999999998887643210 11 124444332 2333222
Q ss_pred HH--HHhcCCCC------CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEEe
Q 045930 102 AY--SAHLRLPS------NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFLD 171 (661)
Q Consensus 102 ~~--~~~l~~~~------~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllLD 171 (661)
.- +.....+. ..+.++. +++.+.++.+.-.+. .+-+ ..++|..|- .+.++.+. .+|+++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 11 11111110 1233332 334444444321111 1110 124676665 34455555 479999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHHhc-CCEEEEEecCCc------------------hHHHhhcCeEEEEeC
Q 045930 172 EPTSGLDS----------AAAFFVVKILKNIAHD-GRTIISSIHQPS------------------SEVFALFDDLFLLSG 222 (661)
Q Consensus 172 EPtsGLD~----------~~~~~i~~~L~~la~~-g~tvi~s~Hq~~------------------~~i~~~~D~v~lL~~ 222 (661)
..+.-.+. .....+.+.|+.++++ |.+||+++|-.. ..+.+.+|.|+.|..
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98754322 1234677888888876 899999988321 024667888888853
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.77 E-value=9.1e-06 Score=93.88 Aligned_cols=130 Identities=18% Similarity=0.115 Sum_probs=71.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCCCCCCCCCHHHHHH
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQENIMLGTLTVRETIA 102 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTV~E~l~ 102 (661)
|+.+++|+.++|+|++|+|||||++.|++.... ....|+| .+|..... ..+.+.+..|...+... +++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~---- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR---- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE----
Confidence 346788999999999999999999999976432 1135655 34432210 01233333332221110 000
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 045930 103 YSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182 (661)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~ 182 (661)
....|+. |. ...+ .......-..+.-++++| |+.|+|..+.
T Consensus 76 -----------------------------~nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~ 116 (665)
T 2dy1_A 76 -----------------------------VFLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE 116 (665)
T ss_dssp -----------------------------EEEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred -----------------------------EEEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH
Confidence 0122321 11 1111 112222335678889999 9999998766
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 183 FFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 183 ~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
+.++.+.+.+..+|+++|...
T Consensus 117 ----~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 ----RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ----HHHHHHHHTTCCEEEEEECGG
T ss_pred ----HHHHHHHHccCCEEEEecCCc
Confidence 334444456888888898853
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.77 E-value=1.2e-05 Score=78.96 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=27.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998765
No 198
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.72 E-value=1.7e-05 Score=77.41 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=27.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-++++|++++|+|+||||||||.+.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999753
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.56 E-value=0.00013 Score=79.59 Aligned_cols=125 Identities=13% Similarity=0.141 Sum_probs=68.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN 112 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 112 (661)
++.+++++||+||||||++..|++.+... .++|. ++.-|.. . ....|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVl--------------lv~~D~~--r-~~a~eqL~---------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVG--------------LVAADVY--R-PAAYDQLL---------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEE--------------EEEECCS--C-HHHHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEE--------------EEecCcc--c-hhHHHHHH----------
Confidence 58899999999999999999999876531 23333 3332210 0 01122222
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 045930 113 MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT-SG--LDSAAAFFVVKIL 189 (661)
Q Consensus 113 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPt-sG--LD~~~~~~i~~~L 189 (661)
..-+..|+.-.... .+..--+--+-+++.+...+++++|+|+|- .+ .|.....++.+.+
T Consensus 146 -----------~~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 146 -----------QLGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp -----------HHHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred -----------HHHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 22233343211100 011111222234555555689999999997 34 7877777766665
Q ss_pred HHHHhcCCEEEEEecC
Q 045930 190 KNIAHDGRTIISSIHQ 205 (661)
Q Consensus 190 ~~la~~g~tvi~s~Hq 205 (661)
+.+..+...+++..|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 5554344445555554
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.54 E-value=1.3e-05 Score=78.15 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=31.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG 72 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g 72 (661)
.++|++++|+|+||||||||++.|++.+++. .|.|.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEec
Confidence 5789999999999999999999999987531 45555543
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.53 E-value=9.4e-05 Score=76.79 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=26.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+.++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46789999999999999999999999865
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.51 E-value=3.3e-05 Score=75.48 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=26.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999999998765
No 203
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.50 E-value=5.4e-05 Score=70.48 Aligned_cols=31 Identities=35% Similarity=0.442 Sum_probs=25.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
++.++.+.+| +.+|+|||||||||+|++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455566666 999999999999999999973
No 204
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.50 E-value=3.6e-05 Score=72.51 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999754
No 205
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.49 E-value=4.3e-05 Score=72.23 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=28.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~ 73 (661)
.+|++++|+||||||||||+++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 479999999999999999999999863 44555543
No 206
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.45 E-value=2.6e-05 Score=77.83 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTS-GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.....+-+++++|.--+...+.+++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456555542 33578999999999966 68777665555544443333356666654444555556654
No 207
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.42 E-value=2.7e-05 Score=82.42 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=24.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++.+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998653
No 208
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.40 E-value=2.7e-05 Score=87.71 Aligned_cols=42 Identities=40% Similarity=0.445 Sum_probs=34.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee-EEE-ECCee
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG-NVL-LNGKK 74 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~i~-~~g~~ 74 (661)
.+++|++++|+|+||||||||+++|+|++.+. .| ++. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47799999999999999999999999998652 44 564 77654
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.38 E-value=0.00013 Score=86.15 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=27.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++|+.++|.||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999864
No 210
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.37 E-value=0.00027 Score=77.58 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=29.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-|+.+.+-+++|+++.|.|++|+|||||.--++..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 46666666899999999999999999998777753
No 211
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.35 E-value=0.00017 Score=75.23 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=35.7
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 162 LTRPQLLFLDEPTS-GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 162 ~~~P~lllLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
..+|++|++||+-. ..|..+...+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35799999999865 234477888888888887778778888776543
No 212
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.34 E-value=7.6e-05 Score=81.51 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=28.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
+.+.+|++++|+|||||||||||++|++...+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999999998755
No 213
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.26 E-value=0.00016 Score=69.93 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.-+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999999764
No 214
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.18 E-value=3.9e-05 Score=82.07 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=31.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999864
No 215
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.12 E-value=0.00048 Score=70.20 Aligned_cols=28 Identities=36% Similarity=0.628 Sum_probs=24.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.++.-+.|.||+|+|||||+++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567779999999999999999999864
No 216
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.12 E-value=0.00025 Score=69.40 Aligned_cols=30 Identities=37% Similarity=0.447 Sum_probs=25.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 455566665 999999999999999999864
No 217
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.12 E-value=0.00079 Score=66.99 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH---------QPSSEVFALFDDLFLLS 221 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~H---------q~~~~i~~~~D~v~lL~ 221 (661)
+|+++++||--. |+. .+++.++.+++.|..||++-| .++..+..++|.|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 653 356677778778999999999 66778899999999875
No 218
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.10 E-value=0.00057 Score=64.32 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 219
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.09 E-value=0.0048 Score=61.18 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=28.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD--GRTIISSIHQ 205 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~--g~tvi~s~Hq 205 (661)
.+|+++++..+.+.++......+...++.+..+ ..++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 368999999998888886655554444443321 2577888874
No 220
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.09 E-value=0.0068 Score=64.48 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=27.9
Q ss_pred eeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 24 LNGLT--GYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 24 L~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
|+.+- +=+++|+++.|.||+|+|||||...++..
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 35899999999999999999999887754
No 221
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.08 E-value=0.00022 Score=71.18 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=27.1
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 23 LLNGLTGYAE---PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 23 iL~~vs~~i~---~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
=|.++|+++. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3677888777 999999999999999999999998765
No 222
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.08 E-value=0.0015 Score=68.18 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=27.7
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 24 LNGLT-GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 24 L~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 5689999999999999999999988875
No 223
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.03 E-value=9.3e-05 Score=78.40 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=36.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
+.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999997643
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.00 E-value=0.00034 Score=66.36 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=25.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++|++++|+|++||||||+.+.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999763
No 225
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.00 E-value=0.00032 Score=68.94 Aligned_cols=38 Identities=34% Similarity=0.546 Sum_probs=27.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL 70 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~ 70 (661)
.+.+++|+|||||||||+.+.|++.+.-.....|++..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 35689999999999999999999865321123455443
No 226
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.96 E-value=0.00071 Score=66.38 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=30.9
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCE-EEEEecCC
Q 045930 163 TRPQLLFLDEPTSGL-DSAAAFFVVKILKNIAHDGRT-IISSIHQP 206 (661)
Q Consensus 163 ~~P~lllLDEPtsGL-D~~~~~~i~~~L~~la~~g~t-vi~s~Hq~ 206 (661)
.+|.++++||.-.-- +......+.+.+....+.++. +|++++.+
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965422 233367788888888776665 77777764
No 227
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.93 E-value=0.00018 Score=76.48 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=29.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEEC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLN 71 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~ 71 (661)
+++.+++|+|++|||||||+|.|+|...+. .|+|.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~ 108 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVL 108 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEE
Confidence 458899999999999999999999976442 3555443
No 228
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.92 E-value=0.00079 Score=72.01 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=27.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La 55 (661)
+++..+.+.+| +++|.|||||||||+|++|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46677787776 99999999999999999987
No 229
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.91 E-value=0.00038 Score=67.66 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=26.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998663
No 230
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.85 E-value=0.00096 Score=72.99 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC------CC---CceeeEEEECCeec
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS------GN---VVMTGNVLLNGKKR 75 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~------~~---~~~~G~i~~~g~~~ 75 (661)
.++|+|+||+|||||+|.|+|... ++ -...|.+.++|.+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 789999999999999999999742 00 02468888998753
No 231
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.84 E-value=0.0041 Score=66.00 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999764
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.84 E-value=0.00046 Score=66.01 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=26.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999975
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.84 E-value=0.0002 Score=80.74 Aligned_cols=47 Identities=30% Similarity=0.420 Sum_probs=38.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG 72 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g 72 (661)
.+++++++.+ +|+.++|+||||+|||||+++|++...+ ..|.|..+|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR---KFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC---EEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC---CeEEEEecc
Confidence 3667778777 8999999999999999999999998754 356665544
No 234
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.73 E-value=0.014 Score=64.84 Aligned_cols=171 Identities=18% Similarity=0.146 Sum_probs=87.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIA 102 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 102 (661)
-|+.+.+-+.+|+++.|.|++|+|||||+--++-..... .| ..+.|+.=+ ++..+.+.
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g-------------~~vl~~s~E------~s~~~l~~ 288 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MG-------------KKVGLAMLE------ESVEETAE 288 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SC-------------CCEEEEESS------SCHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cC-------------CcEEEEecc------CCHHHHHH
Confidence 455555558999999999999999999987776432210 11 124454332 34444332
Q ss_pred H--HHhcCCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEEeCC
Q 045930 103 Y--SAHLRLPSNMNNEEIT-----DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFLDEP 173 (661)
Q Consensus 103 ~--~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllLDEP 173 (661)
= +.....+....+.... +..+++.+.+ +.+ .+-.+-+ ...+++-. +-+..++.++ .+|+++++|=-
T Consensus 289 r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~-~~l~i~~-~~~~~~~~--~i~~~i~~~~~~~~~~lvVID~l 363 (503)
T 1q57_A 289 DLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL-FGN-DTFHLYD-SFAEAETD--RLLAKLAYMRSGLGCDVIILDHI 363 (503)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHH-HTT-TCEEEEC-CC---CHH--HHHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHcCCChhhccccccCCCCHHHHHHHHHHH-hcc-CCEEEEC-CCCCCCHH--HHHHHHHHHHHhcCCCEEEEccc
Confidence 1 1112211110000000 0111222222 110 0111100 00113333 3344445554 36999999954
Q ss_pred CCCC-------CH-HHHHHHHHHHHHHHhc-CCEEEEEecCCc---------------------hHHHhhcCeEEEEe
Q 045930 174 TSGL-------DS-AAAFFVVKILKNIAHD-GRTIISSIHQPS---------------------SEVFALFDDLFLLS 221 (661)
Q Consensus 174 tsGL-------D~-~~~~~i~~~L~~la~~-g~tvi~s~Hq~~---------------------~~i~~~~D~v~lL~ 221 (661)
+. + +. .....+++.|+.+|++ |.+||+++|-.. ..+.+.+|-|+.|.
T Consensus 364 ~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 364 SI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp TC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEE
T ss_pred hh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEE
Confidence 43 2 21 2334577888888876 999999988542 13567799999986
No 235
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.72 E-value=0.0006 Score=65.15 Aligned_cols=38 Identities=32% Similarity=0.364 Sum_probs=27.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG 72 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g 72 (661)
.+++|+|+||||||||++.|.+.+......-|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 58899999999999999999987532111235555544
No 236
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.68 E-value=0.013 Score=61.29 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..|..-+.|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566788999999999999999999865
No 237
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.66 E-value=0.00073 Score=64.58 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=20.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
..+++++|+..++. .++|+|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 34789999998888 5689999999999999999974
No 238
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.66 E-value=0.00071 Score=65.37 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 045930 36 ILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG 56 (661)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 239
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.66 E-value=0.00043 Score=67.67 Aligned_cols=40 Identities=30% Similarity=0.264 Sum_probs=32.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee--EEEECC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG--NVLLNG 72 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G--~i~~~g 72 (661)
.+++|.+++|+|++||||||+.+.|++.+.+ ..| .+.++|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~---~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR---DRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH---HHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---ccCCcEEEECC
Confidence 3578999999999999999999999998653 145 555654
No 240
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.0026 Score=62.93 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=40.7
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchH---------HHhhcCeEEEEe
Q 045930 162 LTRPQLLFLDEPTS----GLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSE---------VFALFDDLFLLS 221 (661)
Q Consensus 162 ~~~P~lllLDEPts----GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~---------i~~~~D~v~lL~ 221 (661)
-.+|+++++|--+. .-|.....+++..|+.++++ |.+++++.|..... +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34789999986432 11445566778888888875 99999998864221 345788888875
No 241
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.54 E-value=0.00026 Score=68.32 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=31.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 468899999888886 689999999999999999874
No 242
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.50 E-value=0.0013 Score=61.06 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 243
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.49 E-value=0.0003 Score=74.68 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=34.0
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 045930 22 RLLNGLTGYAEPARI--LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 578889999999998 9999999999999999999865
No 244
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.0013 Score=62.58 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=26.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
..+|.+++|+|++||||||+.+.|++.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998764
No 245
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.48 E-value=0.0081 Score=59.94 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++..-+.|.||+|+|||||.++++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455568899999999999999999754
No 246
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.46 E-value=0.0022 Score=67.64 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999999765
No 247
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.44 E-value=0.0015 Score=61.91 Aligned_cols=26 Identities=31% Similarity=0.564 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 248
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.42 E-value=0.0012 Score=63.77 Aligned_cols=25 Identities=44% Similarity=0.563 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999864
No 249
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.36 E-value=0.00078 Score=73.37 Aligned_cols=44 Identities=25% Similarity=0.178 Sum_probs=36.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~ 73 (661)
+++++. +|++++++|+|||||||++..|++.+... .|+|.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 577887 89999999999999999999999987652 466666543
No 250
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.33 E-value=0.0015 Score=70.33 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.6
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 27 LTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 27 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+-+.+..|..++|+|+||+|||||+|+|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456778899999999999999999999997
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.33 E-value=0.0032 Score=65.52 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=30.7
Q ss_pred hhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhh
Q 045930 162 LTRPQLLFLDEPT-SGLDSAAAFFVVK-ILKNIAHDGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 162 ~~~P~lllLDEPt-sGLD~~~~~~i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~ 213 (661)
+.++++|++||.- ..+|...+..++. ++.....+++.+|+|++.+..++...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2344444444544 55554345678888888876665554
No 252
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.30 E-value=0.00084 Score=67.73 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=34.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~ 74 (661)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+.. +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 445554 5678899999999999999999999987642 345566543
No 253
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.30 E-value=0.0021 Score=60.38 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.|.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.29 E-value=0.002 Score=59.97 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999764
No 255
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.29 E-value=0.0054 Score=59.38 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=42.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH---------QPSSEVFALFDDLFLLS 221 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~H---------q~~~~i~~~~D~v~lL~ 221 (661)
+.+++++||--- +|+. .++.+++++.+|..||++-+ .++.++.+++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6543 36678888878999999998 66678999999998875
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.29 E-value=0.048 Score=58.12 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+-+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999877764
No 257
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.22 E-value=0.002 Score=60.94 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999863
No 258
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.22 E-value=0.0022 Score=60.50 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 259
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.0005 Score=72.36 Aligned_cols=40 Identities=25% Similarity=0.593 Sum_probs=35.5
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 045930 21 RRLLNGLTGYAEPARI--LAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4578888889999998 999999999999999999997643
No 260
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.19 E-value=0.0023 Score=63.63 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=24.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35688999999999999999999999753
No 261
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.13 E-value=0.0018 Score=65.10 Aligned_cols=34 Identities=32% Similarity=0.598 Sum_probs=24.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++++++..++| +.|.||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44555555555 88999999999999999998653
No 262
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.11 E-value=0.003 Score=59.84 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 263
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.08 E-value=0.01 Score=56.85 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
++.++++||. ..++......+.+.+.+.. .+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6789999995 4567766666666665532 245667777665
No 264
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.07 E-value=0.0029 Score=63.25 Aligned_cols=25 Identities=44% Similarity=0.696 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
No 265
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.05 E-value=0.042 Score=68.96 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=26.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 49999999999999999999999988753
No 266
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.03 E-value=0.0021 Score=63.84 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=28.0
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 045930 161 ILTRPQLLFLDEPTS-GLDSAAAFFVVKILKNIAHDGRTIISSIH 204 (661)
Q Consensus 161 L~~~P~lllLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~s~H 204 (661)
+..+|+++++||+-. ..+........+.+..+-..|..|+.++|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 446899999999763 23322223333444445556889999988
No 267
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.02 E-value=0.00083 Score=69.73 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=30.2
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 25 NG-LTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 25 ~~-vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
++ +++..+ |++++++|++|+||||++..|++.+..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45 777765 999999999999999999999998753
No 268
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.97 E-value=0.0034 Score=59.60 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
No 269
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.95 E-value=0.015 Score=60.88 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6688999999999999999999999875
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.93 E-value=0.0035 Score=63.25 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998643
No 271
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.88 E-value=0.0023 Score=68.24 Aligned_cols=32 Identities=34% Similarity=0.397 Sum_probs=28.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+++++++.| +|+|++|+|||||+|.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 45788888877 999999999999999998864
No 272
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.86 E-value=0.021 Score=56.14 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=44.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH---------QPSSEVFALFDDLFLLS 221 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~H---------q~~~~i~~~~D~v~lL~ 221 (661)
+.+++++||--- +|.. .++.+++++.+|..||++-+ .++..+.+++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6543 34778888878999999999 78889999999999886
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.85 E-value=0.0046 Score=59.33 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.84 E-value=0.0045 Score=58.56 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.84 E-value=0.004 Score=60.04 Aligned_cols=24 Identities=46% Similarity=0.724 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999976543
No 276
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.84 E-value=0.031 Score=58.36 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHH-HHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLL-DALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL-~~LaG 56 (661)
+=+.+| ++.|-||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457899 9999999999999995 44443
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.84 E-value=0.0043 Score=57.41 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 045930 36 ILAVMGPSGSGKSTLLDAL 54 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~L 54 (661)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 278
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.84 E-value=0.0044 Score=60.49 Aligned_cols=24 Identities=46% Similarity=0.569 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 045930 33 PARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.78 E-value=0.0043 Score=58.60 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.++..+.|.|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999854
No 280
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.76 E-value=0.0054 Score=59.00 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999998654
No 281
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.74 E-value=0.037 Score=55.07 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=45.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC---------CchHHHhhcCeEEEEe
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ---------PSSEVFALFDDLFLLS 221 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq---------~~~~i~~~~D~v~lL~ 221 (661)
.+.+++++||----.| +.+.++.+++.|+.||++-++ ++.++.+++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999876644 666677777789999999999 8889999999999885
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.73 E-value=0.0051 Score=58.81 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999864
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.65 E-value=0.0061 Score=57.03 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 045930 35 RILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG 56 (661)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 284
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.64 E-value=0.0058 Score=59.00 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998754
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.60 E-value=0.0057 Score=62.98 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-..|.++.|.|||||||||+.+.|+...
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999998754
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.57 E-value=0.0059 Score=58.09 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
No 287
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.57 E-value=0.0052 Score=62.38 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
No 288
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.56 E-value=0.0063 Score=58.22 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
No 289
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.54 E-value=0.0032 Score=61.00 Aligned_cols=24 Identities=38% Similarity=0.767 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 290
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.54 E-value=0.0063 Score=57.19 Aligned_cols=23 Identities=52% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999754
No 291
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.53 E-value=0.0047 Score=58.65 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++|+|++|||||||++.|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998653
No 292
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.53 E-value=0.036 Score=58.62 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568899999999999999999754
No 293
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.50 E-value=0.0067 Score=58.62 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999754
No 294
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.48 E-value=0.019 Score=63.02 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPT-SGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPt-sGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
.+++....+...+.+++++++.... .|+.... ..+.+.|+ +.++.+|++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~ 141 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL 141 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence 3666667777788888887665544 4555543 34444443 3577888887763
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.43 E-value=0.0083 Score=56.78 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.39 E-value=0.0074 Score=57.05 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999764
No 297
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.07 Score=58.16 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=43.6
Q ss_pred HHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----cCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 157 IALEILTRPQLLFLDEPTS----------GLDSAAAFFVVKILKNIAH----DGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPts----------GLD~~~~~~i~~~L~~la~----~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
...|--..|.|+|+||--+ +-|......+.+.|..+-. .+..||.+|+.|.. .|.- ++..
T Consensus 267 F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpA-llRp 340 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPA-LLRP 340 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTT-TTST
T ss_pred HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHH-HhCC
Confidence 3444556899999999743 2244445556667777642 35689999999842 2332 2345
Q ss_pred Ce---EEEecCCCC
Q 045930 223 GE---TVYFGEAKS 233 (661)
Q Consensus 223 G~---~v~~G~~~~ 233 (661)
|+ .++.+.|+.
T Consensus 341 GRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 341 GRLDRKVEIPLPNE 354 (437)
T ss_dssp TSEEEEECCCCCCH
T ss_pred CccceeeecCCcCH
Confidence 54 467777654
No 298
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.0073 Score=57.12 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.++|+|++|+|||||++.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 299
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.30 E-value=0.0078 Score=55.09 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 300
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.30 E-value=0.0088 Score=55.22 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999864
No 301
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.30 E-value=0.021 Score=63.30 Aligned_cols=28 Identities=32% Similarity=0.628 Sum_probs=23.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4555668999999999999999998754
No 302
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.0089 Score=54.81 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999984
No 303
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.25 E-value=0.0074 Score=55.32 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999998864
No 304
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.056 Score=58.87 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++..=+.+-||+|+|||+|.+++|+..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3444557899999999999999999864
No 305
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.24 E-value=0.099 Score=55.78 Aligned_cols=27 Identities=44% Similarity=0.715 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.22 E-value=0.0075 Score=57.48 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467799999999999999999998753
No 307
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.21 E-value=0.0088 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 308
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.20 E-value=0.18 Score=63.37 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=86.0
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 23 LLNGLT--GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 23 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
-|+.+- +=+++|+++.|.||+|+|||||.-.++..... .| ..+.|+.-+...-+
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~G-------------~~vlyis~E~s~~~------- 425 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP------- 425 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TT-------------CCEEEECTTSCCCH-------
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----hC-------------CCeEEEEccCchHH-------
Confidence 355554 35899999999999999999998777643211 11 23566655543211
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFLDEPTSGLD 178 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllLDEPtsGLD 178 (661)
+ .+.+ +|++. .+-.+-. .-++.| -+.+++.++ .+|+++++|..++=..
T Consensus 426 ~-~a~~----------------------lGvd~-~~L~i~~----~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~ 475 (1706)
T 3cmw_A 426 I-YARK----------------------LGVDI-DNLLCSQ----PDTGEQ--ALEICDALARSGAVDVIVVDSVAALTP 475 (1706)
T ss_dssp H-HHHH----------------------TTCCG-GGCEEEC----CSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred H-HHHH----------------------cCCCH-HHeEEcC----CCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhc
Confidence 0 1111 22210 0000100 012332 234555554 4799999999987654
Q ss_pred H-------------HHHHHHHHHHHHH---Hh-cCCEEEEEecCCc---------------hHHHhhcCeEEEEeCCeEE
Q 045930 179 S-------------AAAFFVVKILKNI---AH-DGRTIISSIHQPS---------------SEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 179 ~-------------~~~~~i~~~L~~l---a~-~g~tvi~s~Hq~~---------------~~i~~~~D~v~lL~~G~~v 226 (661)
. ..+..+.+.+++| ++ .|.+||++.|.-. ..+...+|-++.+...+.+
T Consensus 476 ~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~ 555 (1706)
T 3cmw_A 476 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 555 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEE
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecccc
Confidence 1 1223344555555 44 4899999987521 2466789998888755443
Q ss_pred Ee
Q 045930 227 YF 228 (661)
Q Consensus 227 ~~ 228 (661)
..
T Consensus 556 ~~ 557 (1706)
T 3cmw_A 556 KE 557 (1706)
T ss_dssp EE
T ss_pred cc
Confidence 33
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.19 E-value=0.009 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
No 310
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.18 E-value=0.015 Score=60.64 Aligned_cols=36 Identities=28% Similarity=0.214 Sum_probs=31.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45788888777 8899999999999999999999875
No 311
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.18 E-value=0.0099 Score=54.60 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.17 E-value=0.011 Score=57.77 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998754
No 313
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.17 E-value=0.0091 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999753
No 314
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.16 E-value=0.031 Score=50.84 Aligned_cols=42 Identities=10% Similarity=0.076 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
+..++++||.- .|+...+..+.+.+.+-.+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35789999965 5788888888887776543456677777664
No 315
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.15 E-value=0.0084 Score=54.43 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998754
No 316
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.12 E-value=0.0094 Score=55.26 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.11 E-value=0.0078 Score=56.62 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=18.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998654
No 318
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.083 Score=57.42 Aligned_cols=28 Identities=36% Similarity=0.684 Sum_probs=23.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++..=+.+-||+|+|||+|.++||+..
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444458899999999999999999864
No 319
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.10 E-value=0.011 Score=56.21 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999765
No 320
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.10 E-value=0.0099 Score=54.48 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999865
No 321
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.10 E-value=0.01 Score=54.56 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
No 322
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.09 E-value=0.01 Score=60.60 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 323
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.07 E-value=0.01 Score=54.34 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 324
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.05 E-value=0.011 Score=56.83 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
No 325
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.04 E-value=0.01 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 326
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.03 E-value=0.0095 Score=54.62 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999754
No 327
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.03 E-value=0.011 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
No 328
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.02 E-value=0.014 Score=54.11 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999999853
No 329
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.01 E-value=0.011 Score=54.91 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 330
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.01 E-value=0.011 Score=59.23 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999999964
No 331
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.00 E-value=0.011 Score=57.98 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999653
No 332
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.00 E-value=0.0094 Score=56.18 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 333
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.99 E-value=0.01 Score=56.16 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999863
No 334
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.94 E-value=0.026 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999877664
No 335
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.93 E-value=0.12 Score=65.97 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=84.7
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 23 LLNGLT--GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 23 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
-|+.+- +=+++|+++.|.||+|+|||||...++..... .| ..+.|+.-+...-+ +
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~----~G-------------~~vlyis~E~s~~~---~--- 426 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP---I--- 426 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CCEEEECTTSCCCH---H---
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh----cC-------------CeEEEEEcCCCHHH---H---
Confidence 345443 35999999999999999999998777653321 11 12455544432211 0
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFLDEPTSGLD 178 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllLDEPtsGLD 178 (661)
.+.++ |++. .+-.+-+ .-+.. +-+.+++.++ .+|+++++|.-++=..
T Consensus 427 --~a~~l----------------------Gvd~-~~L~I~~----~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~ 475 (2050)
T 3cmu_A 427 --YARKL----------------------GVDI-DNLLCSQ----PDTGE--QALEICDALARSGAVDVIVVDSVAALTP 475 (2050)
T ss_dssp --HHHHT----------------------TCCT-TTCEEEC----CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred --HHHHc----------------------CCCH-HHeEEeC----CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhc
Confidence 01111 2110 0001111 12332 3345666665 4799999999876552
Q ss_pred -H------------HHHHHHHHHHHHH---Hh-cCCEEEEEecCCch---------------HHHhhcCeEEEEeCCeE
Q 045930 179 -S------------AAAFFVVKILKNI---AH-DGRTIISSIHQPSS---------------EVFALFDDLFLLSGGET 225 (661)
Q Consensus 179 -~------------~~~~~i~~~L~~l---a~-~g~tvi~s~Hq~~~---------------~i~~~~D~v~lL~~G~~ 225 (661)
. ..+..+.+.|++| ++ .|.+||++.|--.. .+...+|-++.|...+.
T Consensus 476 ~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 476 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 1 1233455666666 45 48899998774211 35677899998875543
No 336
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.92 E-value=0.011 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999863
No 337
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.91 E-value=0.011 Score=55.63 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 338
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.89 E-value=0.015 Score=55.89 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998653
No 339
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.097 Score=56.33 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
|-.=+.+-||+|+|||+|.+++|+..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 33347889999999999999999864
No 340
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.86 E-value=0.012 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 341
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.86 E-value=0.012 Score=55.29 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999863
No 342
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.86 E-value=0.012 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999864
No 343
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.85 E-value=0.013 Score=54.90 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
No 344
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.84 E-value=0.014 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37999999999999999999753
No 345
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.84 E-value=0.014 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
No 346
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.82 E-value=0.013 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 347
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.81 E-value=0.21 Score=54.50 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++.+++++|++|+||||+...|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997654
No 348
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.79 E-value=0.015 Score=54.98 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 349
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.78 E-value=0.013 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 350
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.76 E-value=0.016 Score=53.84 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++++|.|+.||||||+-+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998753
No 351
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.76 E-value=0.013 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 352
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.76 E-value=0.016 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
...+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998643
No 353
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.75 E-value=0.014 Score=53.32 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.72 E-value=0.013 Score=57.36 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998653
No 355
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.72 E-value=0.014 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 356
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.66 E-value=0.0095 Score=55.61 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 045930 33 PARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+.--++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999975
No 357
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.65 E-value=0.023 Score=60.45 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
|-.++|+|.+|+|||||+|+|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999984
No 358
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.65 E-value=0.014 Score=54.04 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 359
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.65 E-value=0.017 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.015 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 361
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.63 E-value=0.015 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999999753
No 362
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.63 E-value=0.018 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998743
No 363
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.62 E-value=0.015 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999754
No 364
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.62 E-value=0.017 Score=59.88 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 345 58999999999999999999864
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.61 E-value=0.017 Score=54.40 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.61 E-value=0.019 Score=57.93 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999753
No 367
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.58 E-value=0.014 Score=59.42 Aligned_cols=23 Identities=48% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999998753
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.58 E-value=0.016 Score=54.62 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999999764
No 369
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.57 E-value=0.015 Score=54.92 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++|+|++||||||+-+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
No 370
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.57 E-value=0.029 Score=54.59 Aligned_cols=37 Identities=30% Similarity=0.252 Sum_probs=30.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
...+++.-..+ .|..++|+||+|+|||||...|+.+.
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34677765554 68899999999999999999999763
No 371
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.56 E-value=0.016 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999764
No 372
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.53 E-value=0.016 Score=58.59 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|||||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.49 E-value=0.021 Score=57.08 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6678999999999999999999854
No 374
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.49 E-value=0.019 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999999999764
No 375
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.48 E-value=0.019 Score=59.60 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
No 376
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.46 E-value=0.017 Score=55.83 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 377
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.46 E-value=0.018 Score=53.98 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.=-++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44468999999999999999999754
No 378
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.45 E-value=0.017 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 379
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.44 E-value=0.016 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 380
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.42 E-value=0.018 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 381
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.42 E-value=0.018 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 382
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.41 E-value=0.015 Score=55.69 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999864
No 383
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.37 E-value=0.019 Score=54.21 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
No 384
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.37 E-value=0.018 Score=57.65 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 385
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.017 Score=54.55 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5799999999999999999874
No 386
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.33 E-value=0.018 Score=61.54 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 387
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.32 E-value=0.02 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46899999999999999999753
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.31 E-value=0.018 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999764
No 389
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.28 E-value=0.022 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 390
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.28 E-value=0.021 Score=57.63 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
No 391
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.28 E-value=0.018 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999999853
No 392
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.27 E-value=0.02 Score=59.05 Aligned_cols=23 Identities=39% Similarity=0.692 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|+.|||||||+|.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 393
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.27 E-value=0.02 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 394
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.26 E-value=0.023 Score=56.95 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 395
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.25 E-value=0.024 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999864
No 396
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.23 E-value=0.02 Score=54.32 Aligned_cols=23 Identities=22% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 397
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.22 E-value=0.021 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 398
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.22 E-value=0.027 Score=52.40 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
No 399
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.11 Score=56.69 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=23.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++-.=+.+.||+|+|||+|.++||+..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3455557899999999999999999864
No 400
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.20 E-value=0.021 Score=58.22 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|.+|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 401
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.20 E-value=0.021 Score=54.44 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999973
No 402
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.17 E-value=0.012 Score=57.01 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 403
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.14 E-value=0.02 Score=54.69 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
=-++|+|++|+|||||++.+.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 358999999999999999999864
No 404
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.12 E-value=0.023 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 405
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.11 E-value=0.022 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 406
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.10 E-value=0.023 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 407
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.10 E-value=0.025 Score=57.91 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
...+.|.||+|+|||||.++|++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 36899999999999999999999764
No 408
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.023 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
=-++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999999964
No 409
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.10 E-value=0.023 Score=55.64 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 410
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.10 E-value=0.021 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999954
No 411
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.09 E-value=0.023 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 412
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.07 E-value=0.021 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 413
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.07 E-value=0.022 Score=61.01 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=34.2
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 164 RPQLLFLDEPTSGLD---SAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 164 ~P~lllLDEPtsGLD---~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
+|.++++||-=.=++ +..+..+.+.+++..+.|..++++||.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 478888888876663 566677777777777778888888888753
No 414
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.07 E-value=0.018 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 415
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.06 E-value=0.024 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 416
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.06 E-value=0.024 Score=53.62 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
--++|+|++|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999999854
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.04 E-value=0.028 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 418
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.04 E-value=0.024 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999999864
No 419
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.03 E-value=0.022 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 420
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.03 E-value=0.024 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
No 421
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.02 E-value=0.024 Score=54.30 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999999753
No 422
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.01 E-value=0.026 Score=55.12 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998754
No 423
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.00 E-value=0.021 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999975
No 424
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.00 E-value=0.028 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.99 E-value=0.025 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999999854
No 426
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.99 E-value=0.014 Score=60.04 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
No 427
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.98 E-value=0.025 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-=-++|+|++|+|||||++.+.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3467999999999999999998754
No 428
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.97 E-value=0.024 Score=56.36 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=22.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+..+|.++.|.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999999997653
No 429
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.93 E-value=0.036 Score=58.32 Aligned_cols=28 Identities=36% Similarity=0.614 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+++.++.|+||+|||||||-..|+..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567999999999999999999998753
No 430
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.93 E-value=0.026 Score=57.70 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 045930 34 ARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 431
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.92 E-value=0.023 Score=57.87 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 432
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.91 E-value=0.024 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988753
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.91 E-value=0.033 Score=54.66 Aligned_cols=28 Identities=43% Similarity=0.567 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999987654
No 434
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.86 E-value=0.021 Score=52.97 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 435
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.83 E-value=0.033 Score=54.91 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=24.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..++..++.|+||+||||+|.-+.|+-.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44567789999999999999999999654
No 436
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.025 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 437
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.81 E-value=0.031 Score=53.12 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.=-++|+|++|+|||||++.+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 33458999999999999999999753
No 438
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.78 E-value=0.029 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57999999999999999998753
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.75 E-value=0.033 Score=56.94 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999963
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.73 E-value=0.03 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
No 441
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.69 E-value=0.031 Score=54.25 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998643
No 442
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.68 E-value=0.033 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999998653
No 443
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.67 E-value=0.03 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.66 E-value=0.021 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.66 E-value=0.038 Score=54.53 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+..+.|+|++||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999998654
No 446
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.66 E-value=0.028 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999863
No 447
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.61 E-value=0.028 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
=-++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.56 E-value=0.034 Score=60.21 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.+.+++.|+|++||||||+.+.|+..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467899999999999999999998643
No 449
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.53 E-value=0.037 Score=55.27 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999988653
No 450
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.53 E-value=0.03 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999853
No 451
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.53 E-value=0.033 Score=56.14 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 452
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.49 E-value=0.04 Score=60.42 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=29.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++.+ ..+-+|+..+|+||||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 456689999999999999999999998754
No 453
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.49 E-value=0.034 Score=51.68 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998765
No 454
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.43 E-value=0.034 Score=56.23 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 455
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.42 E-value=0.045 Score=57.03 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999765
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.39 E-value=0.04 Score=53.80 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 457
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.34 E-value=0.04 Score=58.00 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999764
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.32 E-value=0.035 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999753
No 459
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.25 E-value=0.045 Score=53.72 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+|.++.+-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998664
No 460
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.23 E-value=0.019 Score=55.41 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 461
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.21 E-value=0.045 Score=53.91 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
.+|.++.+-|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987653
No 462
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.16 E-value=0.051 Score=52.38 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999765 7877776666655432 13567788887753
No 463
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.15 E-value=0.052 Score=53.72 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+|.++++.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987653
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.11 E-value=0.049 Score=53.93 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
No 465
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.09 E-value=0.044 Score=53.19 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999754
No 466
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.09 E-value=0.042 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.++|+|++|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 467
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.09 E-value=0.043 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 468
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.08 E-value=0.028 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
=-++|+|++|+|||||++.+.+.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.08 E-value=0.035 Score=55.88 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=24.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++.+++|.|+.||||||+.+.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999987653
No 470
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.06 E-value=0.044 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999754
No 471
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.03 E-value=0.041 Score=52.68 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998753
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.03 E-value=0.021 Score=54.36 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999875
No 473
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.97 E-value=0.077 Score=50.44 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=28.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+..++..-.. -.|.-++|.|+||+|||||.-.|..+
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4456665554 46889999999999999999888763
No 474
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.89 E-value=0.055 Score=52.81 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999654
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.87 E-value=0.053 Score=56.69 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++|+||+|||||||-+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 476
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.75 E-value=0.046 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
=-++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36799999999999999999864
No 477
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.69 E-value=0.052 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.61 E-value=0.05 Score=52.20 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
No 479
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.51 E-value=0.071 Score=55.37 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4588999999999999999999764
No 480
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.27 E-value=0.019 Score=57.76 Aligned_cols=22 Identities=41% Similarity=0.794 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.|.||+|+|||||.++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999999854
No 481
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.23 E-value=0.33 Score=61.95 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=31.0
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 22 RLLNGLT--GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 22 ~iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
..|+++. +-+++|+.+.|.||+|+|||||...+.-
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678888 5799999999999999999999988773
No 482
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.19 E-value=0.072 Score=57.31 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.+++|+||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999754
No 483
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.10 E-value=0.08 Score=50.52 Aligned_cols=53 Identities=13% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC---------chHHHhhcCeEEEEe
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP---------SSEVFALFDDLFLLS 221 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~---------~~~i~~~~D~v~lL~ 221 (661)
+++++++||--. +|+ .+++.|+.++++|..|+++.++. ...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 36677888888899999988832 244667789887665
No 484
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.85 E-value=0.027 Score=66.31 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=28.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++.+.+|+.++|.||||+|||||.++|++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 55678999999999999999999999998753
No 485
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.85 E-value=0.052 Score=57.26 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 486
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.81 E-value=0.089 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.++++|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999865
No 487
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.76 E-value=0.23 Score=54.79 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=52.4
Q ss_pred cccCHHHHHHHHHHHHH--hh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 145 RGISGGEKKRLSIALEI--LT---------------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL--~~---------------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
.+.||||+|-.-+|++. +. .-+++++||. +-+|...+...++.++++ |.=+|+++=.
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~-- 451 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE-- 451 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS--
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc--
Confidence 57999999965444433 22 1257999999 999999999999999976 6666666644
Q ss_pred hHHHhhcCeEEEEe
Q 045930 208 SEVFALFDDLFLLS 221 (661)
Q Consensus 208 ~~i~~~~D~v~lL~ 221 (661)
.+....|.++.+-
T Consensus 452 -~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 -NISPERGTTYKLV 464 (483)
T ss_dssp -SCCCSSSEEEECC
T ss_pred -hhhhccCceEEEE
Confidence 4666788888775
No 488
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.74 E-value=0.076 Score=57.18 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEE
Q 045930 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFL 170 (661)
Q Consensus 121 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllL 170 (661)
.++++++.++.... . ..+|.+|.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~-----~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----P-----TKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----G-----GGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----c-----ccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666777766443 1 24889998888777777778988887
No 489
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.73 E-value=0.09 Score=55.53 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999998764
No 490
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.58 E-value=0.076 Score=57.73 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 491
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.55 E-value=0.087 Score=47.87 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
+..+|++||.- .|+...+..+.+.|+.. ..+..+|+++..+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 44689999984 68888888888877322 124567777776543
No 492
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.54 E-value=0.1 Score=53.97 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+--++|+|++|+|||||++.+.+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458999999999999999988763
No 493
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.83 E-value=0.034 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
=-++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 35899999999999999988753
No 494
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.49 E-value=0.096 Score=53.46 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++.-+.|.||+|+|||||.++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999998765
No 495
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.40 E-value=0.086 Score=54.77 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
+++++++|| ...|+......+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888887776543 344666676654
No 496
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.27 E-value=0.1 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-+||+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998654
No 497
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.19 E-value=0.023 Score=54.17 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 498
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=91.13 E-value=0.087 Score=59.59 Aligned_cols=33 Identities=36% Similarity=0.680 Sum_probs=26.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+|.+++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 555542 244578999999999999999999974
No 499
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.11 E-value=0.067 Score=51.77 Aligned_cols=22 Identities=36% Similarity=0.741 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 045930 36 ILAVMGPSGSGKSTLLDA-LAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~-LaG~ 57 (661)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5554
No 500
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.03 E-value=0.084 Score=58.01 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+|=-++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445899999999999999999985
Done!