BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045934
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 100/167 (59%), Positives = 125/167 (74%), Gaps = 6/167 (3%)
Query: 3 REHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQA 62
+E +P PPGFRF+P+D+EL+V YL K LIAE+DLYK++PW LP +A
Sbjct: 10 QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA 69
Query: 63 LFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYT 122
LFGE EW+FFSPRDRKYPNG RPNR AGSGYWKATGTDK I+S+ G +G+KKALVFY
Sbjct: 70 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQ-RVGIKKALVFYI 127
Query: 123 GRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSN 169
G+ P+G KT+W+M+EYRL I+PS+ GS +LDDWVLCR+ K +
Sbjct: 128 GKAPKGTKTNWIMHEYRL----IEPSRRNGSTKLDDWVLCRIYKKQS 170
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 100/167 (59%), Positives = 125/167 (74%), Gaps = 6/167 (3%)
Query: 3 REHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQA 62
+E +P PPGFRF+P+D+EL+V YL K LIAE+DLYK++PW LP +A
Sbjct: 7 QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA 66
Query: 63 LFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYT 122
LFGE EW+FFSPRDRKYPNG RPNR AGSGYWKATGTDK I+S+ G +G+KKALVFY
Sbjct: 67 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQ-RVGIKKALVFYI 124
Query: 123 GRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDWVLCRVRHKSN 169
G+ P+G KT+W+M+EYRL I+PS+ GS +LDDWVLCR+ K +
Sbjct: 125 GKAPKGTKTNWIMHEYRL----IEPSRRNGSTKLDDWVLCRIYKKQS 167
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/170 (60%), Positives = 125/170 (73%), Gaps = 3/170 (1%)
Query: 1 MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPK 60
M RE + A PPGFRFHP+D EL+ +YL K + LP +IAEVDLYK++PW+LP+
Sbjct: 3 MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE 62
Query: 61 QALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVF 120
+ALFG EW+FF+PRDRKYPNG RPNRAAG+GYWKATG DKP+ LG+KKALVF
Sbjct: 63 RALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVF 120
Query: 121 YTGRPPRGAKTDWMMNEYRL-ADTRIKPSKSKGSMRLDDWVLCRVRHKSN 169
Y G+ PRG KTDW+M+EYRL R KGS+RLDDWVLCR+ +K N
Sbjct: 121 YAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 129 AKTDWMMNEYRLADTRIKPSKS--KGSMRLDDWVLCRVRHKSNMPKSAWEIHNT 180
KT + N RLA R++ K +M L+D VRH S++ +AW H+T
Sbjct: 166 GKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWPDHDT 219
>pdb|1O0V|A Chain A, The Crystal Structure Of Ige Fc Reveals An Asymmetrically
Bent Conformation
pdb|1O0V|B Chain B, The Crystal Structure Of Ige Fc Reveals An Asymmetrically
Bent Conformation
Length = 327
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 22/79 (27%)
Query: 126 PRGAKTDWMMNEYRLADTR---IKPSKSKGS-----MRLD---------DWVLCRVRHKS 168
P W+ NE +L D R +P K+KGS RL+ D +CR H++
Sbjct: 251 PEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA 310
Query: 169 NMPKSAWEIHNTQRAELVN 187
P QRA VN
Sbjct: 311 ASPS-----QTVQRAVSVN 324
>pdb|2Y7Q|B Chain B, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
pdb|2Y7Q|D Chain D, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 327
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 22/79 (27%)
Query: 126 PRGAKTDWMMNEYRLADTR---IKPSKSKGS-----MRLD---------DWVLCRVRHKS 168
P W+ NE +L D R +P K+KGS RL+ D +CR H++
Sbjct: 251 PEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA 310
Query: 169 NMPKSAWEIHNTQRAELVN 187
P QRA VN
Sbjct: 311 ASPS-----QTVQRAVSVN 324
>pdb|2WQR|A Chain A, The High Resolution Crystal Structure Of Ige Fc
pdb|2WQR|B Chain B, The High Resolution Crystal Structure Of Ige Fc
Length = 323
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 22/79 (27%)
Query: 126 PRGAKTDWMMNEYRLADTR---IKPSKSKGS-----MRLD---------DWVLCRVRHKS 168
P W+ NE +L D R +P K+KGS RL+ D +CR H++
Sbjct: 248 PEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA 307
Query: 169 NMPKSAWEIHNTQRAELVN 187
P QRA VN
Sbjct: 308 ASPS-----QTVQRAVSVN 321
>pdb|4GT7|A Chain A, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
pdb|4GT7|B Chain B, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
pdb|4GT7|C Chain C, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
pdb|4GT7|D Chain D, An Engineered Disulfide Bond Reversibly Traps The
Ige-Fc3-4 In A Closed, Non-Receptor Binding Conformation
Length = 221
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 22/79 (27%)
Query: 126 PRGAKTDWMMNEYRLADTR---IKPSKSKGS-----MRLD---------DWVLCRVRHKS 168
P W+ NE +L D R +P K+KGS RL+ D +CR H++
Sbjct: 147 PEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA 206
Query: 169 NMPKSAWEIHNTQRAELVN 187
P QRA VN
Sbjct: 207 ASPS-----QTVQRAVSVN 220
>pdb|3H9Y|A Chain A, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Y|B Chain B, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Y|E Chain E, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Z|A Chain A, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Z|B Chain B, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Z|C Chain C, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3H9Z|D Chain D, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|A Chain A, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|B Chain B, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|C Chain C, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|D Chain D, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|E Chain E, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|3HA0|F Chain F, Crystal Structure Of The Ige-Fc3-4 Domains
pdb|4EZM|A Chain A, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|B Chain B, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|C Chain C, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|D Chain D, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|E Chain E, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
pdb|4EZM|F Chain F, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound To
Its B Cell Receptor Dercd23
Length = 223
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 22/79 (27%)
Query: 126 PRGAKTDWMMNEYRLADTR---IKPSKSKGS-----MRLD---------DWVLCRVRHKS 168
P W+ NE +L D R +P K+KGS RL+ D +CR H++
Sbjct: 147 PEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA 206
Query: 169 NMPKSAWEIHNTQRAELVN 187
P QRA VN
Sbjct: 207 ASPS-----QTVQRAVSVN 220
>pdb|4GRG|C Chain C, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|D Chain D, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 230
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 22/79 (27%)
Query: 126 PRGAKTDWMMNEYRLADTR---IKPSKSKGS-----MRLD---------DWVLCRVRHKS 168
P W+ NE +L D R +P K+KGS RL+ D +CR H++
Sbjct: 147 PEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA 206
Query: 169 NMPKSAWEIHNTQRAELVN 187
P QRA VN
Sbjct: 207 ASPS-----QTVQRAVSVN 220
>pdb|1F6A|B Chain B, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
pdb|1F6A|D Chain D, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
pdb|1FP5|A Chain A, Crystal Structure Analysis Of The Human Ige-Fc Cepsilon3-
Cepsilon4 Fragment
Length = 222
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 22/79 (27%)
Query: 126 PRGAKTDWMMNEYRLADTR---IKPSKSKGS-----MRLD---------DWVLCRVRHKS 168
P W+ NE +L D R +P K+KGS RL+ D +CR H++
Sbjct: 146 PEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA 205
Query: 169 NMPKSAWEIHNTQRAELVN 187
P QRA VN
Sbjct: 206 ASPS-----QTVQRAVSVN 219
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 14 PPGFRFHPSDQELIVYYL----------QNKVTSRPLPASLIAE-VDLYKYNPWELPKQA 62
P G R HP+++ ++L ++ ++ RP ++ +E +++ +PWE+P++
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRRD 74
Query: 63 LF 64
F
Sbjct: 75 WF 76
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 14 PPGFRFHPSDQELIVYYL----------QNKVTSRPLPASLIAE-VDLYKYNPWELPKQA 62
P G R HP+++ ++L ++ ++ RP ++ +E +++ +PWE+P++
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRRD 74
Query: 63 LF 64
F
Sbjct: 75 WF 76
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 14 PPGFRFHPSDQELIVYYL----------QNKVTSRPLPASLIAE-VDLYKYNPWELPKQA 62
P G R HP+++ ++L ++ ++ RP ++ +E +++ +PWE+P++
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRRD 74
Query: 63 LF 64
F
Sbjct: 75 WF 76
>pdb|2WM4|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp124 In Complex With Phytanic Acid
pdb|2WM5|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp124
Length = 435
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 31 LQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRK-----YPNGERP 85
+ +V P P IA+++L + W L G F+ R+ +P E P
Sbjct: 14 IATRVNGTPPPEVPIADIELGSLDFWALDDDVRDGA-----FATLRREAPISFWPTIELP 68
Query: 86 NRAAGSGYWKATGTDKPILSS 106
AG+G+W T D +S
Sbjct: 69 GFVAGNGHWALTKYDDVFYAS 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,612,715
Number of Sequences: 62578
Number of extensions: 508872
Number of successful extensions: 912
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 16
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)