Query 045934
Match_columns 350
No_of_seqs 185 out of 951
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.5E-59 5.3E-64 421.3 14.9 167 1-169 3-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.9E-58 6.5E-63 413.3 14.0 164 1-170 4-168 (171)
3 2c4b_A Barnase mcoeeti fusion; 27.8 30 0.001 29.7 2.3 62 22-97 4-73 (143)
4 1cmb_A Met APO-repressor; DNA- 20.6 97 0.0033 24.6 3.8 39 20-62 50-88 (104)
5 1ldd_A APC2WHB, anaphase promo 19.6 53 0.0018 24.9 2.1 26 14-40 37-63 (74)
6 3nr5_A MAF1, repressor of RNA 12.8 46 0.0016 29.0 0.2 13 45-57 119-131 (164)
7 4dox_A Coat protein; all helix 9.5 1.5E+02 0.0051 27.1 2.4 21 15-35 157-177 (226)
8 3cpr_A Dihydrodipicolinate syn 8.8 1.2E+02 0.004 28.2 1.5 19 12-31 117-135 (304)
9 3fkr_A L-2-keto-3-deoxyarabona 8.6 1.6E+02 0.0055 27.4 2.3 29 11-41 108-139 (309)
10 3dz1_A Dihydrodipicolinate syn 8.2 1.5E+02 0.005 27.7 1.9 19 11-31 107-125 (313)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.5e-59 Score=421.28 Aligned_cols=167 Identities=62% Similarity=1.222 Sum_probs=139.1
Q ss_pred CCCCCCCCCCCCCCCCceeCCChHHHHHHHHHHhHcCCCCCCCceEeccCCCCCCCCcCccccCCCCeEEEeeccCCCCC
Q 045934 1 MEREHNPAASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYP 80 (350)
Q Consensus 1 Me~~~~~~~~~~LPpGfRF~PTDEELV~~YL~~Ki~g~plp~~vI~evDvy~~~PwdLP~~~~~g~~eWYFFs~r~rK~~ 80 (350)
|+..++....+.|||||||+|||||||.|||++|+.|.++|..+|+++|||++|||+||+.+..|+.+|||||++++||+
T Consensus 3 ~~~~~~~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~ 82 (174)
T 3ulx_A 3 MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYP 82 (174)
T ss_dssp ------CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC---
T ss_pred cccccccccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccC
Confidence 56777777889999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred CCCCCcccCCCCeEeeecCCccEEcCCCCeeEEEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCC-CCCCCCcCCce
Q 045934 81 NGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLADTRIKPS-KSKGSMRLDDW 159 (350)
Q Consensus 81 ~G~R~~Ratg~G~WKatG~~k~I~~~~~g~vIG~KktL~Fy~gr~p~g~kT~WvMhEYrL~~~~~~~~-~~~~~~~~~e~ 159 (350)
+|.|++|+|++||||++|++++|.+. |.+||+||+|+||.|++|+|.||+|+||||+|.+....+. ...+.+..++|
T Consensus 83 ~g~R~nR~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w 160 (174)
T 3ulx_A 83 NGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW 160 (174)
T ss_dssp --CCSCEEETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE
T ss_pred CCCCceeecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE
Confidence 99999999999999999999999864 7899999999999999999999999999999988743321 12234567899
Q ss_pred EEEEEEecCC
Q 045934 160 VLCRVRHKSN 169 (350)
Q Consensus 160 VLCRIy~k~~ 169 (350)
||||||+|+.
T Consensus 161 VlCrvf~K~~ 170 (174)
T 3ulx_A 161 VLCRLYNKKN 170 (174)
T ss_dssp EEEEEEESCC
T ss_pred EEEEEEEcCC
Confidence 9999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.9e-58 Score=413.32 Aligned_cols=164 Identities=57% Similarity=1.121 Sum_probs=136.7
Q ss_pred CCCCCCC-CCCCCCCCCceeCCChHHHHHHHHHHhHcCCCCCCCceEeccCCCCCCCCcCccccCCCCeEEEeeccCCCC
Q 045934 1 MEREHNP-AASFQFPPGFRFHPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKY 79 (350)
Q Consensus 1 Me~~~~~-~~~~~LPpGfRF~PTDEELV~~YL~~Ki~g~plp~~vI~evDvy~~~PwdLP~~~~~g~~eWYFFs~r~rK~ 79 (350)
|+..+++ ..++.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++.+|||||++++||
T Consensus 4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~ 83 (171)
T 1ut7_A 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY 83 (171)
T ss_dssp CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence 6666654 478999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred CCCCCCcccCCCCeEeeecCCccEEcCCCCeeEEEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCcCCce
Q 045934 80 PNGERPNRAAGSGYWKATGTDKPILSSVGSVNLGVKKALVFYTGRPPRGAKTDWMMNEYRLADTRIKPSKSKGSMRLDDW 159 (350)
Q Consensus 80 ~~G~R~~Ratg~G~WKatG~~k~I~~~~~g~vIG~KktL~Fy~gr~p~g~kT~WvMhEYrL~~~~~~~~~~~~~~~~~e~ 159 (350)
++|.|++|+|++||||++|++++|.+. +.+||+||+|+||.|++|++.||+|+||||+|...... .+....++|
T Consensus 84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~----~~~~~~~~~ 157 (171)
T 1ut7_A 84 PNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR----NGSTKLDDW 157 (171)
T ss_dssp -----CCEEETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------CCE
T ss_pred CCCCcccccCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc----cCcccCCCE
Confidence 999999999999999999999999974 69999999999999999999999999999999876421 123356899
Q ss_pred EEEEEEecCCC
Q 045934 160 VLCRVRHKSNM 170 (350)
Q Consensus 160 VLCRIy~k~~~ 170 (350)
||||||+|...
T Consensus 158 VlCrv~~k~~~ 168 (171)
T 1ut7_A 158 VLCRIYKKQSS 168 (171)
T ss_dssp EEEEEEECC--
T ss_pred EEEEEEEcCCC
Confidence 99999998764
No 3
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=27.82 E-value=30 Score=29.67 Aligned_cols=62 Identities=24% Similarity=0.438 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHhHcCCCCCCCceE--eccCCCCCCCC------cCccccCCCCeEEEeeccCCCCCCCCCCcccCCCCe
Q 045934 22 SDQELIVYYLQNKVTSRPLPASLIA--EVDLYKYNPWE------LPKQALFGEDEWFFFSPRDRKYPNGERPNRAAGSGY 93 (350)
Q Consensus 22 TDEELV~~YL~~Ki~g~plp~~vI~--evDvy~~~Pwd------LP~~~~~g~~eWYFFs~r~rK~~~G~R~~Ratg~G~ 93 (350)
|+.+-|..||.. -..||..+|. +++--+.+|-+ +|+++..|+- |.-+++..|. ..+|+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~v----F~NrE~~LP~-------~~~~~ 69 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDI----FSNREGKLPG-------KSGRT 69 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEE----ECCTTCCSCC-------CTTCC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCce----EecCCCcCCC-------CCCCE
Confidence 556667789876 3567888775 46777888854 5666544432 5555544442 34778
Q ss_pred Eeee
Q 045934 94 WKAT 97 (350)
Q Consensus 94 WKat 97 (350)
|+--
T Consensus 70 y~E~ 73 (143)
T 2c4b_A 70 WREA 73 (143)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8543
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=20.58 E-value=97 Score=24.56 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHHhHcCCCCCCCceEeccCCCCCCCCcCccc
Q 045934 20 HPSDQELIVYYLQNKVTSRPLPASLIAEVDLYKYNPWELPKQA 62 (350)
Q Consensus 20 ~PTDEELV~~YL~~Ki~g~plp~~vI~evDvy~~~PwdLP~~~ 62 (350)
|-|-.||++.-...-..|+|||. +.|+-+..|.++|..+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 56888888877778899999996 6799999999999754
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=19.56 E-value=53 Score=24.92 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCCceeCC-ChHHHHHHHHHHhHcCCCC
Q 045934 14 PPGFRFHP-SDQELIVYYLQNKVTSRPL 40 (350)
Q Consensus 14 PpGfRF~P-TDEELV~~YL~~Ki~g~pl 40 (350)
|.|+.|.. |++||- .||-.++....+
T Consensus 37 ~~~~~~~~it~~eL~-~fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLE-GYLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHH-HHHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHH-HHHHHHHhCCeE
Confidence 67899998 999996 599999987654
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=12.78 E-value=46 Score=29.04 Aligned_cols=13 Identities=54% Similarity=0.907 Sum_probs=10.8
Q ss_pred eEeccCCCCCCCC
Q 045934 45 IAEVDLYKYNPWE 57 (350)
Q Consensus 45 I~evDvy~~~Pwd 57 (350)
+.++|||++.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5678999999983
No 7
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=9.51 E-value=1.5e+02 Score=27.09 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=15.5
Q ss_pred CCceeCCChHHHHHHHHHHhH
Q 045934 15 PGFRFHPSDQELIVYYLQNKV 35 (350)
Q Consensus 15 pGfRF~PTDEELV~~YL~~Ki 35 (350)
-|..+.||++|+|.|=..+++
T Consensus 157 ~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 157 SGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TCCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 389999999999998654444
No 8
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=8.77 E-value=1.2e+02 Score=28.24 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=14.7
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 045934 12 QFPPGFRFHPSDQELIVYYL 31 (350)
Q Consensus 12 ~LPpGfRF~PTDEELV~~YL 31 (350)
-+|| |.|.||+++|+.||-
T Consensus 117 v~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 117 VVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHHH
Confidence 3466 558899999998874
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=8.56 E-value=1.6e+02 Score=27.38 Aligned_cols=29 Identities=17% Similarity=0.631 Sum_probs=18.5
Q ss_pred CCCCCCce---eCCChHHHHHHHHHHhHcCCCCC
Q 045934 11 FQFPPGFR---FHPSDQELIVYYLQNKVTSRPLP 41 (350)
Q Consensus 11 ~~LPpGfR---F~PTDEELV~~YL~~Ki~g~plp 41 (350)
+-+|| |. |.||+++|+.||- .-+...++|
T Consensus 108 lv~~P-yy~~~~~~s~~~l~~~f~-~va~a~~lP 139 (309)
T 3fkr_A 108 MAMPP-YHGATFRVPEAQIFEFYA-RVSDAIAIP 139 (309)
T ss_dssp EECCS-CBTTTBCCCHHHHHHHHH-HHHHHCSSC
T ss_pred EEcCC-CCccCCCCCHHHHHHHHH-HHHHhcCCC
Confidence 34566 54 7999999998764 333333444
No 10
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=8.24 E-value=1.5e+02 Score=27.68 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=13.9
Q ss_pred CCCCCCceeCCChHHHHHHHH
Q 045934 11 FQFPPGFRFHPSDQELIVYYL 31 (350)
Q Consensus 11 ~~LPpGfRF~PTDEELV~~YL 31 (350)
+-+||- |.||+++|+.||-
T Consensus 107 lv~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 107 MIAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp EECCCT--TCCSHHHHHHHHH
T ss_pred EECCCC--CCCCHHHHHHHHH
Confidence 345674 5599999998764
Done!