BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045935
(587 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 163/554 (29%), Positives = 236/554 (42%), Gaps = 88/554 (15%)
Query: 44 NLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPS 103
+ +L HLD+S N L G F I L + NQF G +PP
Sbjct: 218 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--------------- 262
Query: 104 CSITGPLPEELSNYGSSGILNLGSTQLNGSIPAEL-GKCENLKSVLLSFNAXXXXXXXXX 162
LP + Y L+L + G IP L G C+ L + LS N
Sbjct: 263 ------LPLKSLQY-----LSLAENKFTGEIPDFLSGACDTLTGLDLSGN---------- 301
Query: 163 XXXXXXXXXXXWFGKWNQLDXXXXXXNQFVGRIPPE-IGSCSMLKYISLSSNFVSGSIPR 221
+FG + L+ N F G +P + + LK + LS N SG +P
Sbjct: 302 ---HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 222 ELCN-SESLVEINLDGNLLSG------------TIEDLVLGNNHIHGSIPEYLSELP-LV 267
L N S SL+ ++L N SG T+++L L NN G IP LS LV
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 268 VLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFI 327
L L N +G IP SL SK L + N+LEG +P E+ LE L+
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLI-------- 469
Query: 328 QHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNE 387
L FN L+ IP L NCT + ++ LSNN L+ +IP RL NL IL LS N
Sbjct: 470 -------LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 388 LAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPT----- 442
+G+IP E GD L L L N +IP ++ + G + N K +
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 443 ------SLENLKGLTHLDL----SYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNF 492
+L +G+ L + N ++ G + F N+ + + L++S N
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS--MMFLDMSYNM 640
Query: 493 FDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRL 552
G +P+ + ++ YL ++L N +G IP E+G+L L LD+S N L G+IP+ + L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 553 SNLLYLSFEENRFA 566
+ L + N +
Sbjct: 701 TMLTEIDLSNNNLS 714
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 201/440 (45%), Gaps = 56/440 (12%)
Query: 46 QSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPE-IGELSLLEIFSSPSC 104
+L+ LD+S N YG+ PP G+ L L N F+G+LP + + ++ L++
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 105 SITGPLPEELSNYGSSGI-LNLGSTQLNGSIPAELGKCENLKSVLLSFNAXXXXXXXXXX 163
+G LPE L+N +S + L+L S +G I L C+N K+ L
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQEL---------YLQ 399
Query: 164 XXXXXXXXXXWFGKWNQLDXXXXXXNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPREL 223
++L N G IP +GS S L+ + L N + G IP+EL
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 224 CNSESLVEINLDGNLLSGTIED----------LVLGNNHIHGSIPEYLSELP-LVVLDLD 272
++L + LD N L+G I + L NN + G IP+++ L L +L L
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 273 SNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEI--------GNAIALERLVKIHDL 324
+N+F+G IP L + ++LI +NL G +P + N IA +R V I +
Sbjct: 520 NNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 325 ----------SFIQHHGVFDLSFNRLSCPIPEDL-------------GNCTVVVYLLLSN 361
+ ++ G+ NRLS P ++ N +++L +S
Sbjct: 579 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 362 NMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLG 421
NMLS IP + L IL+L N+++GSIP E GD L L L +N+L IP ++
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 422 RLGGLVKLNLTGNKLSGLVP 441
L L +++L+ N LSG +P
Sbjct: 699 ALTMLTEIDLSNNNLSGPIP 718
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 181/382 (47%), Gaps = 44/382 (11%)
Query: 199 IGSCSMLKYISLSSNF------VSG-----SIPRELCNSESLVEINLDGNLLS---GTIE 244
+GSCS LK++++SSN VSG S+ ++ S+ N+ G +LS G ++
Sbjct: 119 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 178
Query: 245 DLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGY 304
L + N I G + + + L LD+ SNNF+ IP + L + N L G
Sbjct: 179 HLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGD 235
Query: 305 LPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNML 364
I L+ L ++S N+ PIP + YL L+ N
Sbjct: 236 FSRAISTCTELKLL---------------NISSNQFVGPIPPL--PLKSLQYLSLAENKF 278
Query: 365 SSKIPGSRSRLTN-LTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIP-GSLGR 422
+ +IP S + LT LDLS N G++PP FG L+ L L +N + +P +L +
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 423 LGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWN 482
+ GL L+L+ N+ SG +P SL NL S LD+ N SGP+ +
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSA------SLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 483 IATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLC 542
+ L L NN F G +P +LSN S L S+ L N +G IP LG+L +L L + NML
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 543 GQIPKKICRLSNL--LYLSFEE 562
G+IP+++ + L L L F +
Sbjct: 453 GEIPQELMYVKTLETLILDFND 474
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 60/360 (16%)
Query: 42 FTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101
+N L L +S N L G+ P +G+L L L +N G++P E+ + LE
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 102 PSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNAXXXXXXXX 161
+TG +P LSN + ++L + +L G IP +G+ ENL + LS
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS----------- 519
Query: 162 XXXXXXXXXXXXWFGKWNQLDXXXXXXNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPR 221
N F G IP E+G C L ++ L++N +G+IP
Sbjct: 520 --------------------------NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 222 ELCNSESLVEIN-LDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGII 280
+ + N + G D + H G++ E+ + L + N I
Sbjct: 554 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 613
Query: 281 PL-------SLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVF 333
+ N+ +++ + N+L GY+P EIG+ + + +
Sbjct: 614 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS---------------MPYLFIL 658
Query: 334 DLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIP 393
+L N +S IP+++G+ + L LS+N L +IP + S LT LT +DLS N L+G IP
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 21/299 (7%)
Query: 3 YLSGNVLNGTVPRQIGELTQXXXXXXXXXXXXXXXXXXXFTNLQSLSHLDVSNNSLYGSF 62
+LS N L+GT+P +G L++ +++L L + N L G
Sbjct: 421 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEI 479
Query: 63 PPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGI 122
P + N NL L N+ TG++P IG L L I + S +G +P EL + S
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 123 LNLGSTQLNGSIPAELGK---------CENLKSVLLSFNAXXXXXXXXXXXXXXXXXXXX 173
L+L + NG+IPA + K + V + +
Sbjct: 540 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 599
Query: 174 WFGKWNQLDXXXXXXNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEIN 233
+ + + + G P + + ++ +S N +SG IP+E+ + L +N
Sbjct: 600 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 234 LDGNLLSGTIEDLV----------LGNNHIHGSIPEYLSELPLVV-LDLDSNNFTGIIP 281
L N +SG+I D V L +N + G IP+ +S L ++ +DL +NN +G IP
Sbjct: 660 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 25/112 (22%)
Query: 1 FRYLSGNVLNGTVPRQIGELTQXXXXXXXXXXXXXXXXXXXFTNLQSLSHLDVSNNSLYG 60
F +S N+L+G +P++IG + + + +L H D+S G
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMP--------------------YLFILNLGHNDIS-----G 667
Query: 61 SFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPE 112
S P E+G+L+ L L N+ G++P + L++L + +++GP+PE
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 189 NQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDL 246
N G IP E+G L + LSSN + G IP+ + L EI+L N LSG I ++
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 163/554 (29%), Positives = 236/554 (42%), Gaps = 88/554 (15%)
Query: 44 NLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPS 103
+ +L HLD+S N L G F I L + NQF G +PP
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--------------- 265
Query: 104 CSITGPLPEELSNYGSSGILNLGSTQLNGSIPAEL-GKCENLKSVLLSFNAXXXXXXXXX 162
LP + Y L+L + G IP L G C+ L + LS N
Sbjct: 266 ------LPLKSLQY-----LSLAENKFTGEIPDFLSGACDTLTGLDLSGN---------- 304
Query: 163 XXXXXXXXXXXWFGKWNQLDXXXXXXNQFVGRIPPE-IGSCSMLKYISLSSNFVSGSIPR 221
+FG + L+ N F G +P + + LK + LS N SG +P
Sbjct: 305 ---HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 222 ELCN-SESLVEINLDGNLLSG------------TIEDLVLGNNHIHGSIPEYLSELP-LV 267
L N S SL+ ++L N SG T+++L L NN G IP LS LV
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 268 VLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFI 327
L L N +G IP SL SK L + N+LEG +P E+ LE L+
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLI-------- 472
Query: 328 QHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNE 387
L FN L+ IP L NCT + ++ LSNN L+ +IP RL NL IL LS N
Sbjct: 473 -------LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 388 LAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPT----- 442
+G+IP E GD L L L N +IP ++ + G + N K +
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 443 ------SLENLKGLTHLDL----SYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNF 492
+L +G+ L + N ++ G + F N+ + + L++S N
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS--MMFLDMSYNM 643
Query: 493 FDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRL 552
G +P+ + ++ YL ++L N +G IP E+G+L L LD+S N L G+IP+ + L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 553 SNLLYLSFEENRFA 566
+ L + N +
Sbjct: 704 TMLTEIDLSNNNLS 717
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 201/440 (45%), Gaps = 56/440 (12%)
Query: 46 QSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPE-IGELSLLEIFSSPSC 104
+L+ LD+S N YG+ PP G+ L L N F+G+LP + + ++ L++
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 105 SITGPLPEELSNYGSSGI-LNLGSTQLNGSIPAELGKCENLKSVLLSFNAXXXXXXXXXX 163
+G LPE L+N +S + L+L S +G I L C+N K+ L
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQEL---------YLQ 402
Query: 164 XXXXXXXXXXWFGKWNQLDXXXXXXNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPREL 223
++L N G IP +GS S L+ + L N + G IP+EL
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 224 CNSESLVEINLDGNLLSGTIED----------LVLGNNHIHGSIPEYLSELP-LVVLDLD 272
++L + LD N L+G I + L NN + G IP+++ L L +L L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 273 SNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEI--------GNAIALERLVKIHDL 324
+N+F+G IP L + ++LI +NL G +P + N IA +R V I +
Sbjct: 523 NNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 325 ----------SFIQHHGVFDLSFNRLSCPIPEDL-------------GNCTVVVYLLLSN 361
+ ++ G+ NRLS P ++ N +++L +S
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 362 NMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLG 421
NMLS IP + L IL+L N+++GSIP E GD L L L +N+L IP ++
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 422 RLGGLVKLNLTGNKLSGLVP 441
L L +++L+ N LSG +P
Sbjct: 702 ALTMLTEIDLSNNNLSGPIP 721
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 181/382 (47%), Gaps = 44/382 (11%)
Query: 199 IGSCSMLKYISLSSNF------VSG-----SIPRELCNSESLVEINLDGNLLS---GTIE 244
+GSCS LK++++SSN VSG S+ ++ S+ N+ G +LS G ++
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
Query: 245 DLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGY 304
L + N I G + + + L LD+ SNNF+ IP + L + N L G
Sbjct: 182 HLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGD 238
Query: 305 LPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNML 364
I L+ L ++S N+ PIP + YL L+ N
Sbjct: 239 FSRAISTCTELKLL---------------NISSNQFVGPIPPL--PLKSLQYLSLAENKF 281
Query: 365 SSKIPGSRSRLTN-LTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIP-GSLGR 422
+ +IP S + LT LDLS N G++PP FG L+ L L +N + +P +L +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 423 LGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWN 482
+ GL L+L+ N+ SG +P SL NL S LD+ N SGP+ +
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSA------SLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 483 IATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLC 542
+ L L NN F G +P +LSN S L S+ L N +G IP LG+L +L L + NML
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 543 GQIPKKICRLSNL--LYLSFEE 562
G+IP+++ + L L L F +
Sbjct: 456 GEIPQELMYVKTLETLILDFND 477
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 60/360 (16%)
Query: 42 FTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101
+N L L +S N L G+ P +G+L L L +N G++P E+ + LE
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 102 PSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNAXXXXXXXX 161
+TG +P LSN + ++L + +L G IP +G+ ENL + LS
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS----------- 522
Query: 162 XXXXXXXXXXXXWFGKWNQLDXXXXXXNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPR 221
N F G IP E+G C L ++ L++N +G+IP
Sbjct: 523 --------------------------NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 222 ELCNSESLVEIN-LDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGII 280
+ + N + G D + H G++ E+ + L + N I
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616
Query: 281 PL-------SLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVF 333
+ N+ +++ + N+L GY+P EIG+ + + +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS---------------MPYLFIL 661
Query: 334 DLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIP 393
+L N +S IP+++G+ + L LS+N L +IP + S LT LT +DLS N L+G IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 21/299 (7%)
Query: 3 YLSGNVLNGTVPRQIGELTQXXXXXXXXXXXXXXXXXXXFTNLQSLSHLDVSNNSLYGSF 62
+LS N L+GT+P +G L++ +++L L + N L G
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEI 482
Query: 63 PPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGI 122
P + N NL L N+ TG++P IG L L I + S +G +P EL + S
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 123 LNLGSTQLNGSIPAELGK---------CENLKSVLLSFNAXXXXXXXXXXXXXXXXXXXX 173
L+L + NG+IPA + K + V + +
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602
Query: 174 WFGKWNQLDXXXXXXNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEIN 233
+ + + + G P + + ++ +S N +SG IP+E+ + L +N
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 234 LDGNLLSGTIEDLV----------LGNNHIHGSIPEYLSELPLVV-LDLDSNNFTGIIP 281
L N +SG+I D V L +N + G IP+ +S L ++ +DL +NN +G IP
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 25/112 (22%)
Query: 1 FRYLSGNVLNGTVPRQIGELTQXXXXXXXXXXXXXXXXXXXFTNLQSLSHLDVSNNSLYG 60
F +S N+L+G +P++IG + L L++ +N + G
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPY-------------------------LFILNLGHNDISG 670
Query: 61 SFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPE 112
S P E+G+L+ L L N+ G++P + L++L + +++GP+PE
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 189 NQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDL 246
N G IP E+G L + LSSN + G IP+ + L EI+L N LSG I ++
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 105/217 (48%), Gaps = 22/217 (10%)
Query: 337 FNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEF 396
N L PIP + T + YL +++ +S IP S++ L LD S N L+G++PP
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 397 GDSLKLQGLFLGNNQLTDSIPGSLGRLGGL-VKLNLTGNKLSGLVPTSLENLKGLTHLDL 455
L G+ N+++ +IP S G L + ++ N+L+G +P + NL L +DL
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204
Query: 456 SYNKLDVQHNKLSGPLN-----ELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSV 510
S N L+ + L G L NS+A+++ + LS N L +
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN---------------LNGL 249
Query: 511 DLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPK 547
DL N+ G +P L L L L+VS N LCG+IP+
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 110/254 (43%), Gaps = 56/254 (22%)
Query: 189 NQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVL 248
N VG IPP I + L Y+ ++ VSG+IP L ++LV ++ N LSGT
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT------ 140
Query: 249 GNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPW 307
+P +S LP LV + D N +G IP S SK + + N L G +P
Sbjct: 141 --------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 308 EIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSK 367
N +L+F+ DLS N L G+ +V+
Sbjct: 193 TFANL----------NLAFV------DLSRNMLE-------GDASVLF------------ 217
Query: 368 IPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLV 427
GS N + L++N LA + + G S L GL L NN++ ++P L +L L
Sbjct: 218 --GSDK---NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 428 KLNLTGNKLSGLVP 441
LN++ N L G +P
Sbjct: 272 SLNVSFNNLCGEIP 285
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 28/253 (11%)
Query: 43 TNLQSLSHLDVSNNSLYGSFP--PEIGNLKNLTHFFLG-INQFTGQLPPEIGELSLLEIF 99
T +++LD+S +L +P + NL L ++G IN G +PP I +L+ L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 100 SSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNAXXXXXX 159
+++G +P+ LS + L+ L+G++P + NL + N
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 160 XXXXXXXXXXXXXXWFGKWNQL-DXXXXXXNQFVGRIPPEIGSCSMLKYISLSSNFVSGS 218
+G +++L N+ G+IPP + + L ++ LS N + G
Sbjct: 167 DS-------------YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212
Query: 219 IPRELCNSESLVEINLDGNL---------LSGTIEDLVLGNNHIHGSIPEYLSELPLV-V 268
+ ++ +I+L N LS + L L NN I+G++P+ L++L +
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 269 LDLDSNNFTGIIP 281
L++ NN G IP
Sbjct: 273 LNVSFNNLCGEIP 285
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 495 GGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSN 554
G +P +++ L+ L + + +G IP L + L LD S N L G +P I L N
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 555 LLYLSFEENRFAVLGINRLDYVKYWKIF 582
L+ ++F+ NR + G Y + K+F
Sbjct: 151 LVGITFDGNRIS--GAIPDSYGSFSKLF 176
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 138/317 (43%), Gaps = 64/317 (20%)
Query: 245 DLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEG 303
D+++ NN I P L+ L L L L +N T I PL KN NL +SN
Sbjct: 89 DILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSN---- 139
Query: 304 YLPWEIGNAIALERLVKIHDLSFIQHHGV-------------FDLSFNRLSCPIPEDLGN 350
I + AL L + LSF + D+S N++S L
Sbjct: 140 ----TISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAK 193
Query: 351 CTVVVYLLLSNNMLSSKIP--------------------GSRSRLTNLTILDLSRNELAG 390
T + L+ +NN +S P G+ + LTNLT LDL+ N+++
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 253
Query: 391 SIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGL 450
P KL L LG NQ+++ P L L L L L N+L + P S NLK L
Sbjct: 254 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 451 THLDLSYNKL-DVQHNKLSGPLNEL-FTNSVAWNIATL-NLSN-NFFDGGLPR-----SL 501
T+L L +N + D+ L L F+N+ ++++L NL+N N+ G + L
Sbjct: 308 TYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 367
Query: 502 SNLSYLTSVDLHRNKFT 518
+NL+ +T + L+ +T
Sbjct: 368 ANLTRITQLGLNDQAWT 384
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 105/250 (42%), Gaps = 55/250 (22%)
Query: 245 DLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEG 303
D+++ NN I P L+ L L L L +N T I PL KN NL +SN
Sbjct: 89 DILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSN---- 139
Query: 304 YLPWEIGNAIALERLVKIHDLSFIQHHGV-------------FDLSFNRLSCPIPEDLGN 350
I + AL L + LSF + D+S N++S L
Sbjct: 140 ----TISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAK 193
Query: 351 CTVVVYLLLSNNMLSSKIP--------------------GSRSRLTNLTILDLSRNELAG 390
T + L+ +NN +S P G+ + LTNLT LDL+ N+++
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 253
Query: 391 SIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGL 450
P KL L LG NQ+++ P L L L L L N+L + P S NLK L
Sbjct: 254 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 451 THLDLSYNKL 460
T+L L +N +
Sbjct: 308 TYLTLYFNNI 317
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 405 LFLGNNQLTD-SIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQ 463
L L +N+L S G GRL LVKL L N+L+G+ P + E + L L NK+
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 464 HNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKF 517
NK+ L++L TLNL +N +P S +L+ LTS++L N F
Sbjct: 94 SNKMFLGLHQL---------KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 344 IPEDLGNCTVVVYLLLSNNMLSS-KIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKL 402
IP D+ LLL++N L G RL +L L+L RN+L G P F + +
Sbjct: 23 IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80
Query: 403 QGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDV 462
Q L LG N++ + L L LNL N++S ++P S E+L LT L+L+ N +
Sbjct: 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 137/316 (43%), Gaps = 63/316 (19%)
Query: 245 DLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEG 303
D+++ NN I P L+ L L L L +N T I PL KN NL +SN
Sbjct: 93 DILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSN---- 143
Query: 304 YLPWEIGNAIALERLVKIHDLSF------------IQHHGVFDLSFNRLSCPIPEDLGNC 351
I + AL L + LSF + D+S N++S L
Sbjct: 144 ----TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKL 197
Query: 352 TVVVYLLLSNNMLSSKIP--------------------GSRSRLTNLTILDLSRNELAGS 391
T + L+ +NN +S P G+ + LTNLT LDL+ N+++
Sbjct: 198 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL 257
Query: 392 IPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLT 451
P KL L LG NQ+++ P L L L L L N+L + P S NLK LT
Sbjct: 258 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLT 311
Query: 452 HLDLSYNKL-DVQHNKLSGPLNEL-FTNSVAWNIATL-NLSN-NFFDGGLPR-----SLS 502
+L L +N + D+ L L F N+ ++++L NL+N N+ G + L+
Sbjct: 312 YLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 371
Query: 503 NLSYLTSVDLHRNKFT 518
NL+ +T + L+ +T
Sbjct: 372 NLTRITQLGLNDQAWT 387
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 105/249 (42%), Gaps = 54/249 (21%)
Query: 245 DLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEG 303
D+++ NN I P L+ L L L L +N T I PL KN NL +SN
Sbjct: 94 DILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSN---- 144
Query: 304 YLPWEIGNAIALERLVKIHDLSF------------IQHHGVFDLSFNRLSCPIPEDLGNC 351
I + AL L + LSF + D+S N++S L
Sbjct: 145 ----TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKL 198
Query: 352 TVVVYLLLSNNMLSSKIP--------------------GSRSRLTNLTILDLSRNELAGS 391
T + L+ +NN +S P G+ + LTNLT LDL+ N+++
Sbjct: 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL 258
Query: 392 IPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLT 451
P KL L LG NQ+++ P L L L L L N+L + P S NLK LT
Sbjct: 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLT 312
Query: 452 HLDLSYNKL 460
+L L +N +
Sbjct: 313 YLTLYFNNI 321
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 142/310 (45%), Gaps = 51/310 (16%)
Query: 245 DLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNL--- 300
D+++ NN I P L+ L L L L +N T I PL KN NL +SN
Sbjct: 89 DILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTISD 143
Query: 301 ---LEGYLPWE-------------IGNAIALERLV----KIHDLSFIQHHGVFD---LSF 337
L G + + N LERL K+ D+S + + +
Sbjct: 144 ISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 203
Query: 338 NRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFG 397
N++S P LG T + L L+ N L K G+ + LTNLT LDL+ N+++ P
Sbjct: 204 NQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LS 257
Query: 398 DSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSY 457
KL L LG NQ+++ P L L L L L N+L + P S NLK LT+L L +
Sbjct: 258 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYF 313
Query: 458 NKL-DVQHNKLSGPLNEL-FTNSVAWNIATL-NLSN-NFFDGGLPR-----SLSNLSYLT 508
N + D+ L L F+N+ ++++L NL+N N+ G + L+NL+ +T
Sbjct: 314 NNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRIT 373
Query: 509 SVDLHRNKFT 518
+ L+ +T
Sbjct: 374 QLGLNDQAWT 383
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 105/250 (42%), Gaps = 55/250 (22%)
Query: 245 DLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEG 303
D+++ NN I P L+ L L L L +N T I PL KN NL +SN
Sbjct: 89 DILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSN---- 139
Query: 304 YLPWEIGNAIALERLVKIHDLSFIQHHGV-------------FDLSFNRLSCPIPEDLGN 350
I + AL L + L+F + D+S N++S L
Sbjct: 140 ----TISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAK 193
Query: 351 CTVVVYLLLSNNMLSSKIP--------------------GSRSRLTNLTILDLSRNELAG 390
T + L+ +NN +S P G+ + LTNLT LDL+ N+++
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 253
Query: 391 SIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGL 450
P KL L LG NQ+++ P L L L L L N+L + P S NLK L
Sbjct: 254 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 451 THLDLSYNKL 460
T+L L +N +
Sbjct: 308 TYLTLYFNNI 317
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 357 LLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFLGNNQLTDS 415
L L +N ++ PG L NL L L N+L G++P DSL +L L LG NQLT
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 416 IPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
RL L +L + NKL+ L P +E L LTHL L N+L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQL 147
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 357 LLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSI 416
L L +N L + G LT LT+LDL N+L F + L+ LF+ N+LT+ +
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-L 127
Query: 417 PGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQ 463
P + RL L L L N+L + + + L LTH L N D +
Sbjct: 128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 385 RNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSL 444
R++ S+P G Q L+L +NQ+T PG L L +L L N+L L
Sbjct: 27 RSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF 84
Query: 445 ENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNL 504
++L LT LDL N+L V + + L L + N T LPR + L
Sbjct: 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT----------ELPRGIERL 134
Query: 505 SYLTSVDLHRNKF 517
++LT + L +N+
Sbjct: 135 THLTHLALDQNQL 147
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%)
Query: 376 TNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNK 435
TN IL L N++ P F + L+ L+LG+NQL G L L L+L N+
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 436 LSGLVPTSLENLKGLTHLDLSYNKL 460
L+ L + L L L + NKL
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKL 124
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 109/243 (44%), Gaps = 42/243 (17%)
Query: 245 DLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNL--- 300
D+++ NN I P L+ L L L L +N T I PL KN NL +SN
Sbjct: 89 DILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTISD 143
Query: 301 ---LEGYLPWE-------------IGNAIALERLV----KIHDLSFIQHHGVFD---LSF 337
L G + + N LERL K+ D+S + + +
Sbjct: 144 ISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 203
Query: 338 NRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFG 397
N++S P LG T + L L+ N L K G+ + LTNLT LDL+ N+++ P
Sbjct: 204 NQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LS 257
Query: 398 DSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSY 457
KL L LG NQ+++ P L L L L L N+L + P S NLK LT+L L +
Sbjct: 258 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYF 313
Query: 458 NKL 460
N +
Sbjct: 314 NNI 316
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 354 VVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLK-LQGLFLGNNQL 412
V YL L N L + LTNLT L L+ N+L S+P D L L+ L L NQL
Sbjct: 65 VRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121
Query: 413 TDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
G +L L LNL N+L L + L LT LDLSYN+L
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 348 LGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLK-LQGLF 406
L T + YL+L+ N L S G +LTNL L L N+L S+P D L L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139
Query: 407 LGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
L +NQL G +L L +L+L+ N+L L + L L L L N+L
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 357 LLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLK-LQGLFLGNNQLTDS 415
L+L N L S G +LTNLT L+L+ N+L S+P D L L L L NQL
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSL 172
Query: 416 IPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461
G +L L L L N+L + + L L ++ L N D
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 13/160 (8%)
Query: 405 LFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQH 464
L LG N+L D +L L L L LTGN+L L + L L L L N+L
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL---Q 122
Query: 465 NKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSL-SNLSYLTSVDLHRNKFTGEIPP 523
+ G ++L N+ LNL++N LP+ + L+ LT +DL N+
Sbjct: 123 SLPDGVFDKLT------NLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 524 ELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEEN 563
L QL+ L + +N L RL++L Y+ +N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 348 LGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLK-LQGLF 406
L T + YL+L+ N L S G +LTNL L L N+L S+P D L L L+
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLY 139
Query: 407 LGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
L +NQL G +L L +L+L N+L L + L L L L+ N+L
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 357 LLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLK-LQGLFLGNNQLTDS 415
L+L N L S G +LTNLT L L N+L S+P D L L L L NNQL
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSL 172
Query: 416 IPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461
G +L L +L+L N+L + + L LTH+ L N D
Sbjct: 173 PEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWD 218
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 112/263 (42%), Gaps = 42/263 (15%)
Query: 228 SLVEINLDGNLLSG-------TIEDLVLGNNHIHGSIPE--YLSELPLVVLDLDSNNFTG 278
+L + NLDG +LSG ++E LVL +N+I P +L+ VLDL N
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168
Query: 279 IIP---LSLWKNSKNLIEFSAAS--NLLEGYLPWE-IGNAIALERLVKIHDLSFIQHHGV 332
I L+ L+ S+ + ++ E +L WE GN + +
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL----------- 217
Query: 333 FDLSFNRLSCPIPEDLGNC---TVVVYLLLSN--NMLSS------KIPGSRS----RLTN 377
DLS N + + + T + L+LSN NM SS K P + + +
Sbjct: 218 -DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276
Query: 378 LTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLS 437
+ DLS++++ + F L+ L L N++ + L L+KLNL+ N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 438 GLVPTSLENLKGLTHLDLSYNKL 460
+ ENL L LDLSYN +
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHI 359
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 115/292 (39%), Gaps = 46/292 (15%)
Query: 320 KIHDLSF---IQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLL----------SNNMLSS 366
KI SF ++ V DL+FN++ EDL N + LL + L
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202
Query: 367 KIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL---KLQGLFLGNNQLTDSIPGSLG-- 421
+ G+ + T++T LDLS N S+ F D++ K+Q L L N+ S G
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262
Query: 422 ----------RLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPL 471
G+ +L+ +K+ L+ + + L L L+ N++ NK+
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI----NKID--- 315
Query: 472 NELFTNSVAWNIA---TLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNL 528
++ W + LNLS NF R NL L +DL N L
Sbjct: 316 -----DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 529 IQLEYLDVSKNMLCGQIPKKIC-RLSNLLYLSFEENRFAVLGINRLDYVKYW 579
L+ L + N L +P I RL++L + N + R+DY+ W
Sbjct: 371 PNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDC-SCPRIDYLSRW 420
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 10/178 (5%)
Query: 348 LGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFL 407
+G ++Y+ NN+ + + S + L L+ N+L G +P FG +KL L L
Sbjct: 303 VGEKIQIIYIGY-NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNL 360
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPT--SLENLKGLTHLDLSYNKLDVQHN 465
NQ+T+ G + L+ NKL +P +++ + +D SYN++
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEIGSVDG 419
Query: 466 KLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSL-SNLSYLTSVDLHRNKFTGEIP 522
K PL+ + N++++NLSNN P+ L S S L+S++L N T EIP
Sbjct: 420 KNFDPLDPTPFKGI--NVSSINLSNNQI-SKFPKELFSTGSPLSSINLXGNXLT-EIP 473
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 368 IPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLV 427
IP + RL L+ N++ P F + LQ L+ +N+LT G +L L
Sbjct: 31 IPTDKQRLW------LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84
Query: 428 KLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQ 463
+L+L N L + + +NLK LTH+ L N D +
Sbjct: 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 352 TVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFLGNN 410
T + +L L N L + G LT L L L+ N+LA S+P D L +L L+LG N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGN 117
Query: 411 QLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
QL G RL L +L L N+L + + + L L L LS N+L
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 375 LTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGN 434
LT LT L+L N+L F D +L L L NNQL G L L KL L GN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 435 KLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFD 494
+L L + L L L L+ N+L + +G ++L N+ TL+LS N
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQL---QSIPAGAFDKLT------NLQTLSLSTNQLQ 168
Query: 495 GGLPRSLSNLSYLTSVDLHRNKF 517
+ L L ++ L N+F
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF 191
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 333 FDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSI 392
+L +N+L + T + L L+NN L+S G LT L L L N+L S+
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SL 122
Query: 393 PPEFGDSL-KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLT 451
P D L KL+ L L NQL G+ +L L L+L+ N+L + + + L L
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182
Query: 452 HLDLSYNKLDV 462
+ L N+ D
Sbjct: 183 TITLFGNQFDC 193
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 20/175 (11%)
Query: 414 DSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNE 473
DS+P G KL+L L+ L + L LT L+L YN+L + L E
Sbjct: 27 DSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84
Query: 474 LFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVD---LHRNKFTGEIPPELGNLIQ 530
L TL L+NN LP L +LT +D L N+ L +
Sbjct: 85 L---------GTLGLANNQL-ASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132
Query: 531 LEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVL---GINRLDYVKYWKIF 582
L+ L ++ N L +L+NL LS N+ + +RL ++ +F
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 352 TVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFLGNN 410
T + +L L N L + G LT L L L+ N+LA S+P D L +L L+LG N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGN 117
Query: 411 QLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
QL G RL L +L L N+L + + + L L L LS N+L
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 375 LTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGN 434
LT LT L+L N+L F D +L L L NNQL G L L KL L GN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 435 KLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFD 494
+L L + L L L L+ N+L + +G ++L N+ TL+LS N
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQL---QSIPAGAFDKLT------NLQTLSLSTNQLQ 168
Query: 495 GGLPRSLSNLSYLTSVDLHRNKF 517
+ L L ++ L N+F
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF 191
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 333 FDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSI 392
+L +N+L + T + L L+NN L+S G LT L L L N+L S+
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SL 122
Query: 393 PPEFGDSL-KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLT 451
P D L KL+ L L NQL G+ +L L L+L+ N+L + + + L L
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182
Query: 452 HLDLSYNKLDVQHNKL 467
+ L N+ D ++
Sbjct: 183 TITLFGNQFDCSRCEI 198
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 357 LLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLK-LQGLFLGNNQLTDS 415
L L +N LSS + RLT L +L L+ N+L ++P LK L+ L++ +N+L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 416 IPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
G +L L +L L N+L L P ++L LT+L L YN+L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 357 LLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFLGNNQLTDS 415
L +++N L + G +L NL L L RN+L S+PP DSL KL L LG N+L
Sbjct: 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL 148
Query: 416 IPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
G +L L +L L N+L + + + L L L L N+L
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 354 VVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFLGNNQL 412
+ L L N L S P LT LT L L NEL S+P D L L+ L L NNQL
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL 169
Query: 413 TDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHN 465
G+ +L L L L N+L + + ++L+ L L L N D N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 18/217 (8%)
Query: 364 LSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRL 423
+ S IP +L DL N+L+ F KL+ L+L +N+L G L
Sbjct: 31 IPSNIPADTKKL------DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 424 GGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNI 483
L L +T NKL L + L L L L N+L ++ L +L S+ +N
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN- 143
Query: 484 ATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCG 543
+L FD L+ L + L+ N+ L +L+ L + N L
Sbjct: 144 ELQSLPKGVFD--------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-K 194
Query: 544 QIPK-KICRLSNLLYLSFEENRFAVLGINRLDYVKYW 579
++P+ L L L +EN + N + Y+ W
Sbjct: 195 RVPEGAFDSLEKLKMLQLQENPWDC-TCNGIIYMAKW 230
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 67/183 (36%), Gaps = 9/183 (4%)
Query: 333 FDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSI 392
DL N+LS + T + L L++N L + G L NL L ++ N+L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 393 PPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTH 452
F + L L L NQL P L L L+L N+L L + L L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161
Query: 453 LDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDL 512
L L N+L L EL TL L NN + +L L + L
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTEL---------KTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 513 HRN 515
N
Sbjct: 213 QEN 215
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 132/300 (44%), Gaps = 46/300 (15%)
Query: 259 EYLSELPLVVLDLDSNNFTGIIPLS-------LWKNSKNLIEFSAA---SNLLEGYLPWE 308
EYL+ L L+L+ N T I PLS L+ + + + SA +NL E YL +
Sbjct: 63 EYLTNLE--YLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED 120
Query: 309 -IGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSK 367
I + L L K + L+ +H + DLS L N T + YL ++ + +
Sbjct: 121 NISDISPLANLTKXYSLNLGANHNLSDLS----------PLSNXTGLNYLTVTESKVKDV 170
Query: 368 IPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLV 427
P + LT+L L L+ N++ P SL ++ NQ+TD P + L
Sbjct: 171 TP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV--NQITDITP--VANXTRLN 224
Query: 428 KLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL-DVQHNKLSGPLNELFTNSVAWNIATL 486
L + NK++ L P L NL LT L++ N++ D+ K L L N+
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKXL-------NVG-- 273
Query: 487 NLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIP 546
SN D + L+NLS L S+ L+ N+ E +G L L L +S+N + P
Sbjct: 274 --SNQISDISV---LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 357 LLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSI 416
L L+ N L+ ++P L+NL +LDLS N L S+P E G +L+ + +N +T ++
Sbjct: 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308
Query: 417 PGSLGRLGGLVKLNLTGNKL 436
P G L L L + GN L
Sbjct: 309 PWEFGNLCNLQFLGVEGNPL 328
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 332 VFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388
V DLS NRL+ +P +LG+C + Y +NM+++ +P L NL L + N L
Sbjct: 274 VLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPL 328
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 482 NIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNML 541
N+ N+S N F +LT + L+ N T E+P E+ NL L LD+S N L
Sbjct: 233 NLQIFNISANIF---------KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282
Query: 542 CGQIPKKICRLSNLLYLSFEENRFAVL 568
+P ++ L Y F +N L
Sbjct: 283 TS-LPAELGSCFQLKYFYFFDNMVTTL 308
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 395 EFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLD 454
++ D L L L N Q+ + I ++ + L +L L GN L+ L P ++NL L LD
Sbjct: 220 KYDDQL-WHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLD 276
Query: 455 LSYNKL 460
LS+N+L
Sbjct: 277 LSHNRL 282
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 195 IPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLL 239
+P E+GSC LKY N V+ ++P E N +L + ++GN L
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 110 LPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLK 145
LP E+ N + +L+L +L S+PAELG C LK
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 115/275 (41%), Gaps = 34/275 (12%)
Query: 300 LLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDL--SFNRLSCPIPEDLGNCTVVVYL 357
LL+ + E+ N L+ + +I +F H + L FN + P N ++ L
Sbjct: 64 LLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122
Query: 358 LLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIP 417
+L N LSS G LT L +S N L F + LQ L L +N+LT
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-- 180
Query: 418 GSLGRLGGLVKLNLTGNKLSGL-VPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFT 476
L + L N++ N LS L +P ++E LD S+N ++V + GP+N
Sbjct: 181 -DLSLIPSLFHANVSYNLLSTLAIPIAVEE------LDASHNSINV----VRGPVN---- 225
Query: 477 NSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDV 536
V I L NN D L N L VDL N+ + + +LE L +
Sbjct: 226 --VELTILKLQ-HNNLTDTAW---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279
Query: 537 SKNMLC-----GQ-IPK-KICRLSNLLYLSFEENR 564
S N L GQ IP K+ LS+ L E N+
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ 314
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 107/265 (40%), Gaps = 63/265 (23%)
Query: 225 NSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLV-VLDLDSNNFTGIIPLS 283
N + EI+ + TI+ L +G N I P +PL+ VL L+ N+ + +P
Sbjct: 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRG 135
Query: 284 LWKNSKNLIEFSAASNLLEGYLPWEIGNAIALE-------RLVKIHDLSFIQHHGVFDLS 336
++ N+ L S ++N LE +L+ RL + DLS I ++S
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVS 194
Query: 337 FNRLSC-PIP---EDLG-------------NCTVVVYLLLSNNMLSSK----IPGSRSRL 375
+N LS IP E+L N + + L NN+ + PG
Sbjct: 195 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG----- 249
Query: 376 TNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNK 435
L +DLS NEL + F +L+ L++ NN+ LV LNL G
Sbjct: 250 --LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR--------------LVALNLYGQP 293
Query: 436 LSGLVPTSLENLKGLTHLDLSYNKL 460
+PT L LDLS+N L
Sbjct: 294 ----IPT-------LKVLDLSHNHL 307
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 344 IPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQ 403
+P + T V+YL +N ++ PG RLT LT LDL
Sbjct: 24 VPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLD------------------- 62
Query: 404 GLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDV 462
NNQLT G +L L +L+L N+L + + +NLK LTH+ L N D
Sbjct: 63 -----NNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 391 SIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGL 450
SIP +++K L L NN++T L R L L LT N ++ + S +L L
Sbjct: 45 SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 451 THLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSV 510
HLDLSYN L + PL+ L LNL N + SL S+LT +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSL---------TFLNLLGNPYKTLGETSL--FSHLTKL 151
Query: 511 DLHR----NKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYL 558
+ R + FT + L LE L++ + L PK + + N+ +L
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 344 IPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQ 403
+P + T V+YL +N ++ PG RLT LT LDL
Sbjct: 32 VPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLD------------------- 70
Query: 404 GLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDV 462
NNQLT G +L L +L+L N+L + + +NLK LTH+ L N D
Sbjct: 71 -----NNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 124
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 102/247 (41%), Gaps = 27/247 (10%)
Query: 300 LLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDL--SFNRLSCPIPEDLGNCTVVVYL 357
LL+ + E+ N L+ + +I +F H + L FN + P N ++ L
Sbjct: 70 LLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128
Query: 358 LLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIP 417
+L N LSS G LT L +S N L F + LQ L L +N+LT
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-- 186
Query: 418 GSLGRLGGLVKLNLTGNKLSGL-VPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFT 476
L + L N++ N LS L +P ++E LD S+N ++V + GP+N
Sbjct: 187 -DLSLIPSLFHANVSYNLLSTLAIPIAVEE------LDASHNSINV----VRGPVN---- 231
Query: 477 NSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDV 536
V I L NN D L N L VDL N+ + + +LE L +
Sbjct: 232 --VELTILKLQ-HNNLTDTAW---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285
Query: 537 SKNMLCG 543
S N L
Sbjct: 286 SNNRLVA 292
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 107/265 (40%), Gaps = 63/265 (23%)
Query: 225 NSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLV-VLDLDSNNFTGIIPLS 283
N + EI+ + TI+ L +G N I P +PL+ VL L+ N+ + +P
Sbjct: 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRG 141
Query: 284 LWKNSKNLIEFSAASNLLEGYLPWEIGNAIALE-------RLVKIHDLSFIQHHGVFDLS 336
++ N+ L S ++N LE +L+ RL + DLS I ++S
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVS 200
Query: 337 FNRLSC-PIP---EDLG-------------NCTVVVYLLLSNNMLSSK----IPGSRSRL 375
+N LS IP E+L N + + L NN+ + PG
Sbjct: 201 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG----- 255
Query: 376 TNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNK 435
L +DLS NEL + F +L+ L++ NN+ LV LNL G
Sbjct: 256 --LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR--------------LVALNLYGQP 299
Query: 436 LSGLVPTSLENLKGLTHLDLSYNKL 460
+PT L LDLS+N L
Sbjct: 300 ----IPT-------LKVLDLSHNHL 313
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 344 IPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQ 403
+P + T V+YL +N ++ PG RLT LT LDL
Sbjct: 24 VPTGIPTTTQVLYLY--DNRITKLEPGVFDRLTQLTRLDLD------------------- 62
Query: 404 GLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDV 462
NNQLT G +L L +L+L N+L + + +NL+ LTH+ L N D
Sbjct: 63 -----NNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDC 116
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 391 SIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGL 450
SIP +++K L L NN++T L R L L LT N ++ + S +L L
Sbjct: 19 SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 451 THLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSV 510
HLDLSYN L + PL+ L LNL N + SL S+LT +
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSL---------TFLNLLGNPYKTLGETSL--FSHLTKL 125
Query: 511 DLHR----NKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYL 558
+ R + FT + L LE L++ + L PK + + N+ +L
Sbjct: 126 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 177
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 35/188 (18%)
Query: 333 FDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELA--- 389
DLS NR++ DL C + L+L++N +++ S S L +L LDLS N L+
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 390 ----------------GSIPPEFGDS------LKLQGLFLGN-NQLTDSIPGSLGRLGGL 426
G+ G++ KLQ L +GN + T L L
Sbjct: 91 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 150
Query: 427 VKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATL 486
+L + + L P SL++++ ++HL + H K L E+F + V ++ L
Sbjct: 151 EELEIDASDLQSYEPKSLKSIQNVSHL--------ILHMKQHILLLEIFVD-VTSSVECL 201
Query: 487 NLSNNFFD 494
L + D
Sbjct: 202 ELRDTDLD 209
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 10/203 (4%)
Query: 338 NRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFG 397
NR+S C + L L +N+L+ + + L L LDLS N S+ P
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 398 DSL-KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLS 456
L +L L L L + PG L L L L N L L + +L LTHL L
Sbjct: 101 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 160
Query: 457 YNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNK 516
N++ + L+ L L L N P + +L L ++ L N
Sbjct: 161 GNRISSVPERAFRGLHSL---------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 211
Query: 517 FTGEIPPELGNLIQLEYLDVSKN 539
+ L L L+YL ++ N
Sbjct: 212 LSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 10/203 (4%)
Query: 338 NRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFG 397
NR+S C + L L +N+L+ + + L L LDLS N S+ P
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 398 DSL-KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLS 456
L +L L L L + PG L L L L N L L + +L LTHL L
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 457 YNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNK 516
N++ + L+ L L L N P + +L L ++ L N
Sbjct: 162 GNRISSVPERAFRGLHSL---------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 517 FTGEIPPELGNLIQLEYLDVSKN 539
+ L L L+YL ++ N
Sbjct: 213 LSALPTEALAPLRALQYLRLNDN 235
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 21/220 (9%)
Query: 331 GVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAG 390
+ DL N+++ D N + L+L NN +S PG+ + L L L LS+N+L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 391 SIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL--SGLVPTSLENLK 448
+P + + LQ L + N++T L ++ + L N L SG+ + + +K
Sbjct: 114 ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 449 GLTHLDLSYNKLDVQHNKLSGPLNEL------FTNSVAW------NIATLNLSNNFFDGG 496
L+++ ++ + L L EL T A N+A L LS N
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 497 LPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDV 536
SL+N +L + L+ NK ++P G L +Y+ V
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVP---GGLADHKYIQV 267
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 23/164 (14%)
Query: 382 DLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVP 441
DL ++ +PP+ L L NN++T+ G L L L L NK+S + P
Sbjct: 40 DLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 442 TSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNS-----------------VAWNIA 484
+ L L L LS N+L K+ L EL + + +
Sbjct: 94 GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 485 TLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNL 528
T L ++ + G + + LSY+ D + +PP L L
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 197
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 21/220 (9%)
Query: 331 GVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAG 390
+ DL N+++ D N + L+L NN +S PG+ + L L L LS+N+L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 391 SIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL--SGLVPTSLENLK 448
+P + + LQ L + N++T L ++ + L N L SG+ + + +K
Sbjct: 114 ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 449 GLTHLDLSYNKLDVQHNKLSGPLNELF--TNSVAW----------NIATLNLSNNFFDGG 496
L+++ ++ + L L EL N + N+A L LS N
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 497 LPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDV 536
SL+N +L + L+ NK ++P G L +Y+ V
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVP---GGLADHKYIQV 267
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 23/164 (14%)
Query: 382 DLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVP 441
DL ++ +PP+ L L NN++T+ G L L L L NK+S + P
Sbjct: 40 DLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93
Query: 442 TSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNS-----------------VAWNIA 484
+ L L L LS N+L K+ L EL + + +
Sbjct: 94 GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 485 TLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNL 528
T L ++ + G + + LSY+ D + +PP L L
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 197
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 344 IPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQ 403
IP D V L L N + +P S +LT++DLS N ++ F + +L
Sbjct: 29 IPRD------VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 404 GLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQ 463
L L N+L P + L L L+L GN +S + + +L L+HL + N L
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141
Query: 464 HN 465
N
Sbjct: 142 CN 143
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 426 LVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIAT 485
+ +L L GN+ + LVP L N K LT +DLS +N++S N+ F+N + T
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLS-------NNRISTLSNQSFSNMT--QLLT 82
Query: 486 LNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNML 541
L LS N PR+ L L + LH N + +L L +L + N L
Sbjct: 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 323 DLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILD 382
+LS +H + DLS NR+S + N T ++ L+LS N L P + L +L +L
Sbjct: 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 383 LSRNELAGSIPPE--FGDSLKLQGLFLGNNQL 412
L N++ S+ PE F D L L +G N L
Sbjct: 109 LHGNDI--SVVPEGAFNDLSALSHLAIGANPL 138
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 492 FFDGG----LPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPK 547
+ DG +P+ LSN +LT +DL N+ + N+ QL L +S N L P+
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Query: 548 KICRLSNLLYLSFEENRFAVL 568
L +L LS N +V+
Sbjct: 97 TFDGLKSLRLLSLHGNDISVV 117
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 334 DLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIP 393
DLSFN L N + + +L LS + + + L +L+ L L+ N + P
Sbjct: 38 DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97
Query: 394 PEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL-SGLVPTSLENLKGLTH 452
F L+ L +L +G+L L KLN+ N + S +P NL L H
Sbjct: 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157
Query: 453 LDLSYN 458
+DLSYN
Sbjct: 158 VDLSYN 163
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
+DLS N L F + +LQ L L ++ + L L L LTGN +
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG-GLPR 499
P S L L +L KL S P+ +L T + LN+++NF LP
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLE---SFPIGQLIT------LKKLNVAHNFIHSCKLPA 147
Query: 500 SLSNLSYLTSVDLHRN 515
SNL+ L VDL N
Sbjct: 148 YFSNLTNLVHVDLSYN 163
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 375 LTNLTILDLSRNELAG-SIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTG 433
LT+L L ++ N ++ F ++ L L L QL G L L LN++
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 434 NKLSGLVPTSLENLKGLTHLDLSYNKLD-----VQHNKLSGPLNELFTNSVA 480
N L L + L L+ LD S+N+++ +QH S L NSVA
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 334 DLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIP 393
DLSFN L N + + +L LS + + + L +L+ L L+ N + P
Sbjct: 33 DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 92
Query: 394 PEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL-SGLVPTSLENLKGLTH 452
F L+ L +L +G+L L KLN+ N + S +P NL L H
Sbjct: 93 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 152
Query: 453 LDLSYN 458
+DLSYN
Sbjct: 153 VDLSYN 158
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
+DLS N L F + +LQ L L ++ + L L L LTGN +
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG-GLPR 499
P S L L +L KL S P+ +L T + LN+++NF LP
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLE---SFPIGQLIT------LKKLNVAHNFIHSCKLPA 142
Query: 500 SLSNLSYLTSVDLHRN 515
SNL+ L VDL N
Sbjct: 143 YFSNLTNLVHVDLSYN 158
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 375 LTNLTILDLSRNELAG-SIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTG 433
LT+L L ++ N ++ F ++ L L L QL G L L LN++
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 434 NKLSGLVPTSLENLKGLTHLDLSYNKLD-----VQHNKLSGPLNELFTNSVA 480
N L L + L L+ LD S+N+++ +QH S L NSVA
Sbjct: 502 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 553
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 14/184 (7%)
Query: 376 TNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNK 435
T +LDL +N + EF L+ L L N ++ PG+ L L L L N+
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 436 LSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG 495
L + L LT LD+S NK+ + L+ +F + +N+ +L + +N
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVIL-------LDYMFQD--LYNLKSLEVGDNDLVY 142
Query: 496 GLPRSLSNLSYLTSVDLHRNKFTGEIPPE----LGNLIQLEYLDVSKNMLCGQIPKKICR 551
R+ S L+ L + L + T IP E L LI L ++ N + K++ R
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201
Query: 552 LSNL 555
L L
Sbjct: 202 LKVL 205
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 375 LTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGN 434
L+NLT LD+S N++ + F D L+ L +G+N L + L L +L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 435 KLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSN-NFF 493
L+ + +L +L GL L L + ++ + ++ + + L +S+ +
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRD---------YSFKRLYRLKVLEISHWPYL 213
Query: 494 DGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKN 539
D P L L+ LTS+ + T + +L+ L +L++S N
Sbjct: 214 DTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 112/282 (39%), Gaps = 64/282 (22%)
Query: 332 VFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGS 391
V +L++N+++ E + L LS N+L + L + +DL +N +A
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 392 IPPEFGDSLKLQGLFLGNNQLTD-----SIPG---SLGRLGGLVKLNLTGNKLSGLVPTS 443
F KLQ L L +N LT SIP S +L L K+NLT N L L
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN-LIHLSENR 412
Query: 444 LENLKGLTHLDLSYNKLDVQH--------NKLSG-----------PLNELFTN----SVA 480
LENL D+ Y L V H N+ S L +LF +A
Sbjct: 413 LENL------DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466
Query: 481 W-------------NIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFT----GEIPP 523
W ++ L L++N+ + P S+L+ L + L+ N+ T ++P
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA 526
Query: 524 ELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRF 565
L E LD+S+N L P LS L N+F
Sbjct: 527 NL------EILDISRNQLLAPNPDVFVSLS---VLDITHNKF 559
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 356 YLLLSNNMLSSKIPGSRSRLTN------LTILDLSRNELAGSIPPEFGDSL--------- 400
+ L+ N L S++ + N L ILD+S N I F +++
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 401 ---KLQGLFLGNNQLTDSIPGSLGRLG--GLVKLNLTGNKLSGLVPTSLENLKGLTHLDL 455
+ G G + + D + L + L+L+ + L E LK L L+L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297
Query: 456 SYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRN 515
+YNK++ ++ L+ L ++++N+ S+NF+ GLP+ + +DL +N
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY--GLPK-------VAYIDLQKN 348
Query: 516 KFTGEIPPELGNLIQLEYLDVSKNML 541
L +L+ LD+ N L
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNAL 374
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 111/306 (36%), Gaps = 77/306 (25%)
Query: 329 HHGVFDLSFNRLSCPIPEDL-GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNE 387
+ V D S +L+ IP+DL N TV L L++N L P + +R + L ILD N
Sbjct: 5 RYNVADCSHLKLT-HIPDDLPSNITV---LNLTHNQLRRLPPTNFTRYSQLAILDAGFNS 60
Query: 388 LAGSIPPEFGDSLKL-QGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLEN 446
++ + PE L L + L L +N+L+ + L +L+L N + + +N
Sbjct: 61 IS-KLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKN 119
Query: 447 LKGLTHLDLSYN-------------------------------------------KLDVQ 463
K L LDLS+N KLD+
Sbjct: 120 QKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLS 179
Query: 464 HNKLS--------------------GPLNELFTNSVAW-----NIATLNLSNNFFDGGLP 498
N L LN T + W +I L+L+NN
Sbjct: 180 SNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSE 239
Query: 499 RSLSNLSY--LTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLL 556
+ S L + LT +DL N L L YL + N + P+ LSNL
Sbjct: 240 STFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLR 299
Query: 557 YLSFEE 562
YLS +
Sbjct: 300 YLSLKR 305
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 19/136 (13%)
Query: 351 CTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNN 410
CTV + +++ + IP +N+T+L+L+ N+L P F +L L G N
Sbjct: 2 CTVRYNVADCSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFN 59
Query: 411 QLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYN------------ 458
++ P L L LNL N+LS + + LT LDL N
Sbjct: 60 SISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKN 119
Query: 459 -----KLDVQHNKLSG 469
KLD+ HN LS
Sbjct: 120 QKNLIKLDLSHNGLSS 135
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 243 IEDLVLGNNHIHGSIPEYLSEL------PLVVLDLD-SNNFTGIIPLSLWKN-----SKN 290
+E+LVL +N + IP YLS L P+V +D++ NNF G L++N S+N
Sbjct: 32 VENLVLDDNDENTIIPYYLSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSEN 91
Query: 291 LIEFSAASNLLEGYLPWEIGNAIALERLVK---IHDLSFIQHHGVFDLS 336
+F + LP N I R++K I FI H+G LS
Sbjct: 92 FRQFCTGEYKVNN-LPVGYKNTI-FHRVIKEFMIQGGDFINHNGSGSLS 138
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 352 TVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFLGNN 410
T + L L N L S G ++LT+LT L+LS N+L S+P D L +L+ L L N
Sbjct: 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTN 110
Query: 411 QLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDV 462
QL G +L L L L N+L + + L L ++ L N D
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 379 TILDLSRNELAGSIPPEFGDSL-KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLS 437
T LDL N L S+P D L L L+LG N+L G +L L LNL+ N+L
Sbjct: 31 TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 438 GLVPTSLENLKGLTHLDLSYNKL 460
L + L L L L+ N+L
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQL 112
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 43/107 (40%)
Query: 354 VVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLT 413
YL L N L S G LT+LT L L N+L F L L L NQL
Sbjct: 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 414 DSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
G +L L +L L N+L L + L L L L N+L
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 415 SIP-GSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNE 473
S+P G L L +L L GNKL L L LT+L+LS N+L N + L +
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101
Query: 474 LFTNSVAWNIATL-NLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLE 532
L +A N L +L + FD L+ L + L++N+ L L+
Sbjct: 102 L--KELALNTNQLQSLPDGVFD--------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 533 YL 534
Y+
Sbjct: 152 YI 153
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 370 GSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKL 429
G+ L+NL L+L+ L P +KL L L N L+ PGS L L KL
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Query: 430 NLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNEL 474
+ +++ + + +NL+ L ++L++N L + + L PL+ L
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 75/204 (36%), Gaps = 34/204 (16%)
Query: 371 SRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLN 430
S L +L IL LSRN + F L L L +N+LT G+ L L +L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142
Query: 431 LTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSN 490
L N + + + + L LDL G L L
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDL-------------GELKRL---------------- 173
Query: 491 NFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKIC 550
++ G LSNL YL + + P L LI+L+ LD+S N L P
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLREI-----PNLTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 551 RLSNLLYLSFEENRFAVLGINRLD 574
L +L L +++ V+ N D
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFD 252
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 308 EIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSK 367
E ++L L+ + D+S F+ FN LS ++ V + N+ +
Sbjct: 413 EFSVFLSLRNLIYL-DISHTHTRVAFNGIFNGLS----------SLEVLKMAGNSFQENF 461
Query: 368 IPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLV 427
+P + L NLT LDLS+ +L P F LQ L + +NQL G RL L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 428 KLNLTGNKLSGLVP 441
K+ L N P
Sbjct: 522 KIWLHTNPWDCSCP 535
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 17/214 (7%)
Query: 371 SRSRLTNLTILDLSRNELA---GSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLV 427
S L +L LDLSRN L+ +FG + L+ L L N + LG L L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLG-LEQLE 399
Query: 428 KLNLTGNKLSGLVPTSLE-NLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATL 486
L+ + L + S+ +L+ L +LD+S+ V N + L+ L +A
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------ 453
Query: 487 NLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIP 546
N+F + LP + L LT +DL + + P +L L+ L+++ N L +P
Sbjct: 454 --GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVP 510
Query: 547 KKIC-RLSNLLYLSFEENRFAVLGINRLDYVKYW 579
I RL++L + N + R+DY+ W
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWDC-SCPRIDYLSRW 543
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 334 DLSFNRLSCPIPEDLGNCTVVVY-----LLLSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388
DLSFN L LG+ + + L LS + + G+ L++L+ L L+ N +
Sbjct: 34 DLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 389 AGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGL-VPTSLENL 447
F LQ L L +G L L +LN+ N + +P NL
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 448 KGLTHLDLSYNKL 460
L HLDLS NK+
Sbjct: 149 TNLEHLDLSSNKI 161
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 56/151 (37%), Gaps = 8/151 (5%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
LDLS N L F +LQ L L ++ G+ L L L LTGN + L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRS 500
+ L L L L N G L L +VA N+ LP
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--------SFKLPEY 144
Query: 501 LSNLSYLTSVDLHRNKFTGEIPPELGNLIQL 531
SNL+ L +DL NK +L L Q+
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 42 FTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEI-GELSLLEIFS 100
F +L++L +LD+S+ +F L +L + N F P+I EL L
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 101 SPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIP 135
C + P ++ S +LN+ S QL S+P
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVP 510
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 330 HGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELA 389
HGVFD T + L LS N + S G +LT LTIL L N+L
Sbjct: 45 HGVFD---------------KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 390 GSIPPEFGDSL-KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVP 441
S+P D L +L+ L L NQL G RL L K+ L N P
Sbjct: 90 -SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 354 VVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFLGNNQL 412
L L +N L S G +LT LT L LS+N++ S+P D L KL L+L N+L
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL 88
Query: 413 TDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDV 462
G +L L +L L N+L + + L L + L N D
Sbjct: 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 446 NLKGLTHLDL----SYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSL 501
N KGLT + S +L+++ NKL + +F + L+LS N
Sbjct: 15 NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLT--QLTKLSLSQNQIQSLPDGVF 72
Query: 502 SNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKIC-RLSNLLYLSF 560
L+ LT + LH NK L QL+ L + N L +P I RL++L +
Sbjct: 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWL 131
Query: 561 EENRFAVLGINRLDYVKYW 579
N + R+DY+ W
Sbjct: 132 HTNPWDC-SCPRIDYLSRW 149
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 376 TNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNK 435
T +L L N++ P F +L L L NQLT G +L L L L N+
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ 99
Query: 436 LSGLVPTSLENLKGLTHLDLSYNKLD-------------VQHNKLSGPL 471
L + +NLK LTH+ L N D VQH + PL
Sbjct: 100 LKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIVQHASIVNPL 148
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFL 407
G V+ L LS+N L S +P L LT+LD+S N L S+P L +LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
N+L PG L L KL+L N+L+ L L L+ L L L N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 321 IHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYL---LLSNNMLSSKIPGSRSRLTN 377
I ++S + H + +L+ +P DL T +++L LL L++ +P +R N
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 378 LTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLS 437
L +L++ ++ G++P L L L +NQL S+P L L L+++ N+L+
Sbjct: 62 LDRCELTKLQVDGTLP-------VLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT 113
Query: 438 GLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIAT 485
L +L L L L L N+L L P +L S+A N T
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 331 GVFDLSFNRL-SCPIPEDLGNCTVVVYLL-LSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388
G DLS N+L S P+ LG + +L +S N L+S G+ L L L L NEL
Sbjct: 80 GTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 389 AGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL 436
P + KL+ L L NNQLT+ G L L L L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFL 407
G V+ L LS+N L S +P L LT+LD+S N L S+P L +LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
N+L PG L L KL+L N+L+ L L L+ L L L N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 321 IHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYL---LLSNNMLSSKIPGSRSRLTN 377
I ++S + H + +L+ +P DL T +++L LL L++ +P +R N
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 378 LTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLS 437
L +L++ ++ G++P L L L +NQL S+P L L L+++ N+L+
Sbjct: 62 LDRCELTKLQVDGTLP-------VLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT 113
Query: 438 GLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIAT 485
L +L L L L L N+L L P +L S+A N T
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 331 GVFDLSFNRL-SCPIPEDLGNCTVVVYLL-LSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388
G DLS N+L S P+ LG + +L +S N L+S G+ L L L L NEL
Sbjct: 80 GTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 389 AGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL 436
P + KL+ L L NNQLT+ G L L L L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFL 407
G V+ L LS+N L S +P L LT+LD+S N L S+P L +LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
N+L PG L L KL+L N+L+ L L L+ L L L N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 321 IHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYL---LLSNNMLSSKIPGSRSRLTN 377
I ++S + H + +L+ +P DL T +++L LL L++ +P +R N
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 378 LTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLS 437
L +L++ ++ G++P L L L +NQL S+P L L L+++ N+L+
Sbjct: 62 LDRCELTKLQVDGTLP-------VLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT 113
Query: 438 GLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIAT 485
L +L L L L L N+L L P +L S+A N T
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 331 GVFDLSFNRL-SCPIPEDLGNCTVVVYLL-LSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388
G DLS N+L S P+ LG + +L +S N L+S G+ L L L L NEL
Sbjct: 80 GTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 389 AGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL 436
P + KL+ L L NNQLT+ G L L L L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFL 407
G V+ L LS+N L S +P L LT+LD+S N L S+P L +LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
N+L PG L L KL+L N+L+ L L L+ L L L N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 321 IHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYL---LLSNNMLSSKIPGSRSRLTN 377
I ++S + H + +L+ +P DL T +++L LL L++ +P +R N
Sbjct: 3 ICEVSKVASHLEVNCDKRQLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 378 LTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLS 437
L +L++ ++ G++P L L L +NQL S+P L L L+++ N+L+
Sbjct: 62 LDRCELTKLQVDGTLP-------VLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT 113
Query: 438 GLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIAT 485
L +L L L L L N+L L P +L S+A N T
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 331 GVFDLSFNRL-SCPIPEDLGNCTVVVYLL-LSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388
G DLS N+L S P+ LG + +L +S N L+S G+ L L L L NEL
Sbjct: 80 GTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 389 AGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL 436
P + KL+ L L NNQLT+ G L L L L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 146/366 (39%), Gaps = 63/366 (17%)
Query: 174 WFGKWNQLDXXXXXXNQFVGRIPPEIGSCSMLK--YISLSSNFVSGSIPRELCNSESLVE 231
W G + +D F G + S ++ K + ++SSN C S L E
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH-------CFS-GLQE 282
Query: 232 INLDGNLLS---------GTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPL 282
++L LS T++ LVL N + + ++NF + L
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFEN------------LCQISASNFPSLTHL 330
Query: 283 SLWKNSKNLIEFSAASNLLEGYLPWEIG-NAIALERLVKIHDLSFIQHHGVFDLSFNRLS 341
S+ N+K L + LE ++ + I + L + H +LS+N
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNEPL 389
Query: 342 CPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNL----------TILDLSRNELAGS 391
E C + L L+ L K+ ++S NL ++LD+S +L
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRL--KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Query: 392 IPPEFGDSLKLQGLFL--GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKG 449
+P L LQG GN Q T+S+ +LGRL LV L+ LS + + +LK
Sbjct: 448 LPA--LQHLNLQGNHFPKGNIQKTNSLQ-TLGRLEILV---LSFCDLSSIDQHAFTSLKM 501
Query: 450 LTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTS 509
+ H+DLS+N+L + L ++ LNL++N LP L LS +
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGIY----------LNLASNHISIILPSLLPILSQQRT 551
Query: 510 VDLHRN 515
++L +N
Sbjct: 552 INLRQN 557
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 402 LQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461
LQ L L L++ +P L L L KL L+ NK L S N LTHL + N
Sbjct: 280 LQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 462 VQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGG--LPRSLSNLSYLTSVDLHRNKFTG 519
++ +G L L N+ L+LS++ + L NLS+L S++L N+
Sbjct: 339 LELG--TGCLENL------ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390
Query: 520 EIPPELGNLIQLEYLDVS 537
QLE LD++
Sbjct: 391 LKTEAFKECPQLELLDLA 408
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 394 PEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHL 453
P ++L+ L L N+L PGS L L KL L +++ + + ++LK L L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 454 DLSYNKLDVQHNKLSGPLNEL 474
+LS+N L + L PL+ L
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRL 252
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 130/343 (37%), Gaps = 57/343 (16%)
Query: 241 GTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNL 300
GT ED+ + I ++ + L E+ + L+L + F+ I + ++ L E +
Sbjct: 230 GTFEDI--DDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTT-FQCFTQLQELDLTATH 286
Query: 301 LEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLS 360
L+G LP + L++LV LS N N + +L +
Sbjct: 287 LKG-LPSGMKGLNLLKKLV---------------LSVNHFDQLCQISAANFPSLTHLYIR 330
Query: 361 NNMLSSKI-PGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGS 419
N+ + G +L NL LDLS N++ S D LQ
Sbjct: 331 GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS------DCCSLQ---------------- 368
Query: 420 LGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSV 479
L L L LNL+ N+ GL + + L LDL++ +L + N P L
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI--NAPQSPFQNLHF--- 423
Query: 480 AWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFT-GEIPPELGNLIQ----LEYL 534
+ LNL+ F D L+ L L ++L N F G I NL+Q LE L
Sbjct: 424 ---LQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKT--NLLQTVGSLEVL 478
Query: 535 DVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVK 577
+S L + L + ++ N I+ L ++K
Sbjct: 479 ILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLK 521
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 344 IPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQ 403
IP+ L N T +L S N L + + SRL NLT LDL+R ++ F +L
Sbjct: 24 IPDTLPNTTE--FLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLS 81
Query: 404 GLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
L L N L SL L L L +S L + NL+ L L L N +
Sbjct: 82 TLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHI 138
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
+L+ L+LGNN++TD L RL L L+L N++S +VP L L L +L LS N +
Sbjct: 155 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 210
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 317 RLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLT 376
RL +H L +H F S P+P + YL LS+N L + S L
Sbjct: 62 RLTNLHSLLLSHNHLNFISS--EAFVPVPN-------LRYLDLSSNHLHTLDEFLFSDLQ 112
Query: 377 NLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSL----GRLGGLVKLNLT 432
L +L L N + F D +LQ L+L NQ++ P L +L L+ L+L+
Sbjct: 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLS 171
Query: 433 GNKLSGLVPTSLENLKG 449
NKL L T L+ L
Sbjct: 172 SNKLKKLPLTDLQKLPA 188
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 96/240 (40%), Gaps = 49/240 (20%)
Query: 338 NRLSCP------IPEDLGNCTVVVYLLLSNNMLSS-KIPGSRSRLTNLT----------- 379
N LSC +P+ L + T + L LS+N LS + + +RLTNL
Sbjct: 21 NILSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78
Query: 380 -------------ILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGL 426
LDLS N L F D L+ L L NN + + + L
Sbjct: 79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138
Query: 427 VKLNLTGNKLSGLVPTSL----ENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWN 482
KL L+ N++S P L L L LDLS NKL KL PL +L AW
Sbjct: 139 QKLYLSQNQISRF-PVELIKDGNKLPKLMLLDLSSNKL----KKL--PLTDL-QKLPAWV 190
Query: 483 IATLNLSNNFF--DGGLPRSLSNLSY--LTSVDLHRNKFTGEIPPELGNLIQLEYLDVSK 538
L L NN D L + S+ Y L+SV + +L N+ L++ + S+
Sbjct: 191 KNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSE 250
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 394 PEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHL 453
P ++L+ L L N+L PGS L L KL L +++ + + ++LK L L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 454 DLSYNKLDVQHNKLSGPLNEL 474
+LS+N L + L PL+ L
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRL 252
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
+L+ L+LGNN++TD L RL L L+L N++S +VP L L L +L LS N +
Sbjct: 133 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 188
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVP----TSLENL 447
+L+ L+LGNN++TD L RL L L+L N++S +VP T L+NL
Sbjct: 130 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLACLTKLQNL 178
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 342 CPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLK 401
C + ++ +C+ ++ +++P TN+T+L+L+ N+L F +
Sbjct: 2 CTVSHEVADCS---------HLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQ 50
Query: 402 LQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461
L L +G N ++ P +L L LNL N+LS L + LT L L N +
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
L L+RN A + P L L+ + L N DS P L L L+L+ N ++ +
Sbjct: 443 LQLTRNSFA--LVPSL-QRLMLRRVALKN---VDSSPSPFQPLRNLTILDLSNNNIANIN 496
Query: 441 PTSLENLKGLTHLDLSYNKLDV--QHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLP 498
LE L+ L LDL +N L +H GP+ F ++ ++ LNL +N FD
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPI--YFLKGLS-HLHILNLESNGFDEIPV 553
Query: 499 RSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKI 549
+L L +DL N N + L+ L++ KN++ + KK+
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEKKV 603
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 107/286 (37%), Gaps = 81/286 (28%)
Query: 332 VFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAG- 390
V +L N LS + CT + L L +N + + NL LDLS N L+
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Query: 391 ----------------------SIPPE----FGDSLKLQGLFLGNNQLTDSIPG---SLG 421
++ E F +S L+ L L +NQ+ + PG ++G
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIG 195
Query: 422 RLGGLV------------------------KLNLTGNKLSGLVPTSLENLK--GLTHLDL 455
RL GL L+L+ ++LS T+ LK LT LDL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 456 SYNKLDVQHNKLSGPL-------------NELFTNSVA--WNIATLNLSNNFFD-----G 495
SYN L+V N L LF++S+ +N+ LNL +F
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 496 GLPR----SLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVS 537
LP+ S L L +++ N G LI L+YL +S
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
+L+ L+LGNN++TD L RL L L+L N++S +VP L L L +L LS N +
Sbjct: 135 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
+L+ L+LGNN++TD L RL L L+L N++S +VP L L L +L LS N +
Sbjct: 135 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 342 CPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLK 401
C + ++ +C+ ++ +++P TN+T+L+L+ N+L F +
Sbjct: 7 CTVSHEVADCS---------HLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQ 55
Query: 402 LQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461
L L +G N ++ P +L L LNL N+LS L + LT L L N +
Sbjct: 56 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 115
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
L L+RN A + P L L+ + L N DS P L L L+L+ N ++ +
Sbjct: 448 LQLTRNSFA--LVPSL-QRLMLRRVALKN---VDSSPSPFQPLRNLTILDLSNNNIANIN 501
Query: 441 PTSLENLKGLTHLDLSYNKLDV--QHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLP 498
LE L+ L LDL +N L +H GP+ F ++ ++ LNL +N FD
Sbjct: 502 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPI--YFLKGLS-HLHILNLESNGFDEIPV 558
Query: 499 RSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKI 549
+L L +DL N N + L+ L++ KN++ + KK+
Sbjct: 559 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEKKV 608
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 107/286 (37%), Gaps = 81/286 (28%)
Query: 332 VFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAG- 390
V +L N LS + CT + L L +N + + NL LDLS N L+
Sbjct: 82 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Query: 391 ----------------------SIPPE----FGDSLKLQGLFLGNNQLTDSIPG---SLG 421
++ E F +S L+ L L +NQ+ + PG ++G
Sbjct: 142 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIG 200
Query: 422 RLGGLV------------------------KLNLTGNKLSGLVPTSLENLK--GLTHLDL 455
RL GL L+L+ ++LS T+ LK LT LDL
Sbjct: 201 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 260
Query: 456 SYNKLDVQHNKLSGPL-------------NELFTNSVA--WNIATLNLSNNFFD-----G 495
SYN L+V N L LF++S+ +N+ LNL +F
Sbjct: 261 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 320
Query: 496 GLPR----SLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVS 537
LP+ S L L +++ N G LI L+YL +S
Sbjct: 321 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 366
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFL 407
G V+ L LS+N L S +P L LT+LD+S N L S+P L +LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
N+L PG L L KL+L N L+ L L L+ L L L N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 11/145 (7%)
Query: 344 IPEDLGNCTVVVYL---LLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL 400
+P DL T +++L LL L++ +P +R NL +L++ ++ G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP------- 77
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
L L L +NQL S+P L L L+++ N+L+ L +L L L L L N+L
Sbjct: 78 VLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 461 DVQHNKLSGPLNELFTNSVAWNIAT 485
L P +L S+A N T
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLT 161
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 331 GVFDLSFNRL-SCPIPEDLGNCTVVVYLL-LSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388
G DLS N+L S P+ LG + +L +S N L+S G+ L L L L NEL
Sbjct: 80 GTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 389 AGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL 436
P + KL+ L L NN LT+ G L L L L L N L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHL 453
+L+ L+LGNN++TD L RL L L+L N++S +VP L GLT L
Sbjct: 130 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKL 175
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 353 VVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQL 412
+ + L N + PG+ S L +DLS N+++ P F L L L N++
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 413 TDSIPGSLGR-LGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPL 471
T+ +P SL L L L L NK++ L + ++L L L L NKL PL
Sbjct: 93 TE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 472 NELFTNSVAWN 482
+ T +A N
Sbjct: 152 RAIQTMHLAQN 162
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
+L+ L+LGNN++TD L RL L L+L N++S +VP L L L +L LS N +
Sbjct: 132 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFL 407
G V+ L LS+N L S +P L LT+LD+S N L S+P L +LQ L+L
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 132
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
N+L PG L L KL+L N L+ L L L+ L L L N L
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 344 IPEDLGNCTVVVYL---LLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL 400
+P DL T +++L LL L++ +P +R NL +L++ ++ G++P
Sbjct: 26 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP------- 78
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
L L L +NQL S+P L L L+++ N+L+ L +L L L L L N+L
Sbjct: 79 VLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 461 DVQHNKLSGPLNELFTNSVAWN 482
L P +L S+A N
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANN 159
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 333 FDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLS--SKIPGSRSRLTNLTILDLSRNELAG 390
D S N L+ + E+ G+ T + L+L N L SKI +++ +L LD+S+N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV-- 386
Query: 391 SIPPEFGD---SLKLQGLFLGNNQLTD---------------------SIPGSLGRLGGL 426
S + GD + L L + +N LTD SIP + +L L
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEAL 446
Query: 427 VKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461
+LN+ N+L + + L L + L N D
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 380 ILDLSRNELAGSI----PPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNK 435
+L+LS N L GS+ PP K++ L L NN++ SIP + L L +LN+ N+
Sbjct: 432 VLNLSSNMLTGSVFRCLPP------KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484
Query: 436 LSGLVPTSLENLKGLTHLDLSYNKLD 461
L + + L L ++ L N D
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNPWD 510
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFL 407
G V+ L LS+N L S +P L LT+LD+S N L S+P L +LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
N+L PG L L KL+L N L+ L L L+ L L L N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 344 IPEDLGNCTVVVYL---LLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL 400
+P DL T +++L LL L++ +P +R NL +L++ ++ G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP------- 77
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
L L L +NQL S+P L L L+++ N+L+ L +L L L L L N+L
Sbjct: 78 VLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 461 DVQHNKLSGPLNELFTNSVAWN 482
L P +L S+A N
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANN 158
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 353 VVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQL 412
+ + L N + PG+ S L +DLS N+++ P F L L L N++
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 413 TDSIPGSLGR-LGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPL 471
T+ +P SL L L L L NK++ L + ++L L L L NKL PL
Sbjct: 93 TE-LPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 472 NELFTNSVAWN 482
+ T +A N
Sbjct: 152 RAIQTMHLAQN 162
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFL 407
G V+ L LS+N L S +P L LT+LD+S N L S+P L +LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
N+L PG L L KL+L N L+ L L L+ L L L N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 344 IPEDLGNCTVVVYL---LLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL 400
+P DL T +++L LL L++ +P +R NL +L++ ++ G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP------- 77
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
L L L +NQL S+P L L L+++ N+L+ L +L L L L L N+L
Sbjct: 78 VLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 461 DVQHNKLSGPLNELFTNSVAWN 482
L P +L S+A N
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANN 158
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFL 407
G V+ L LS+N L S +P L LT+LD+S N L S+P L +LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
N+L PG L L KL+L N L+ L L L+ L L L N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 344 IPEDLGNCTVVVYL---LLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL 400
+P DL T +++L LL L++ +P +R NL +L++ ++ G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP------- 77
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
L L L +NQL S+P L L L+++ N+L+ L +L L L L L N+L
Sbjct: 78 VLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 461 DVQHNKLSGPLNELFTNSVAWN 482
L P +L S+A N
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANN 158
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 351 CTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNN 410
CTV + +++ +++P TN+T+L+L+ N+L F +L L +G N
Sbjct: 12 CTVSHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 69
Query: 411 QLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461
++ P +L L LNL N+LS L + LT L L N +
Sbjct: 70 TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 120
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
L L+RN A + P L L+ + L N DS P L L L+L+ N ++ +
Sbjct: 453 LQLTRNSFA--LVPSL-QRLMLRRVALKN---VDSSPSPFQPLRNLTILDLSNNNIANIN 506
Query: 441 PTSLENLKGLTHLDLSYNKLDV--QHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLP 498
LE L+ L LDL +N L +H GP+ F ++ ++ LNL +N FD
Sbjct: 507 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPI--YFLKGLS-HLHILNLESNGFDEIPV 563
Query: 499 RSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKI 549
+L L +DL N N + L+ L++ KN++ + KK+
Sbjct: 564 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEKKV 613
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 107/286 (37%), Gaps = 81/286 (28%)
Query: 332 VFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAG- 390
V +L N LS + CT + L L +N + + NL LDLS N L+
Sbjct: 87 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Query: 391 ----------------------SIPPE----FGDSLKLQGLFLGNNQLTDSIPG---SLG 421
++ E F +S L+ L L +NQ+ + PG ++G
Sbjct: 147 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAIG 205
Query: 422 RLGGLV------------------------KLNLTGNKLSGLVPTSLENLK--GLTHLDL 455
RL GL L+L+ ++LS T+ LK LT LDL
Sbjct: 206 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 265
Query: 456 SYNKLDVQHNKLSGPL-------------NELFTNSVA--WNIATLNLSNNFFD-----G 495
SYN L+V N L LF++S+ +N+ LNL +F
Sbjct: 266 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 325
Query: 496 GLPR----SLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVS 537
LP+ S L L +++ N G LI L+YL +S
Sbjct: 326 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 371
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL-KLQGLFL 407
G V+ L LS+N L S +P L LT+LD+S N L S+P L +LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
N+L PG L L KL+L N L+ L L L+ L L L N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 344 IPEDLGNCTVVVYL---LLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL 400
+P DL T +++L LL L++ +P +R NL +L++ ++ G++P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP------- 77
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
L L L +NQL S+P L L L+++ N+L+ L +L L L L L N+L
Sbjct: 78 VLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 461 DVQHNKLSGPLNELFTNSVAWN 482
L P +L S+A N
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANN 158
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
+L+ L+LGNN++TD L RL L L+L N++S +VP L L L +L LS N +
Sbjct: 153 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
+L+ L+LGNN++TD L RL L L+L N++S +VP L L L +L LS N +
Sbjct: 153 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
+L+ L+LGNN++TD L RL L L+L N++S +VP L L L +L LS N +
Sbjct: 153 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 78/208 (37%), Gaps = 10/208 (4%)
Query: 357 LLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNN-QLTDS 415
+ L N +S S NLTIL L N LAG F L+ L L +N QL
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 416 IPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELF 475
P + LG L L+L L L P L L +L L Q N L + F
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYL-------QDNNLQALPDNTF 148
Query: 476 TNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLD 535
+ N+ L L N + L L + LH+N P +L +L L
Sbjct: 149 RD--LGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLY 206
Query: 536 VSKNMLCGQIPKKICRLSNLLYLSFEEN 563
+ N L + + L +L YL +N
Sbjct: 207 LFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 1/126 (0%)
Query: 352 TVVVYLLLSNN-MLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNN 410
T++ L LS+N L P + L +L L L R L P F LQ L+L +N
Sbjct: 79 TLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 138
Query: 411 QLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGP 470
L + LG L L L GN++ + + L L L L N + H
Sbjct: 139 NLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRD 198
Query: 471 LNELFT 476
L L T
Sbjct: 199 LGRLMT 204
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 407 LGNNQLTDSIPGSLGRLGGLVKLNLTGNKLS--GLVPTSLENLKGLTHLDLSYN------ 458
L +N+L G +L L KL+L+ N LS G S L +LDLS+N
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94
Query: 459 ----------KLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLT 508
LD QH+ L ++E N+ L++S+ + LS L
Sbjct: 95 SNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153
Query: 509 SVDLHRNKFTGEIPPEL-GNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRF 565
+ + N F P++ L L +LD+S+ L P LS+L L+ N F
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 354 VVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELA---GSIPPEFGDSLKLQGLFLGNN 410
L L +N L S G +LT LT L LS N L+ +FG + L+ L L N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFN 88
Query: 411 QLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLE-NLKGLTHLDLSYNKLDVQHNKLSG 469
+ LG L L L+ + L + S+ +L+ L +LD+S+ V N +
Sbjct: 89 GVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 470 PLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLI 529
L+ L +A N+F + LP + L LT +DL + + P +L
Sbjct: 148 GLSSLEVLKMA--------GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 530 QLEYLDVSKN 539
L+ L++S N
Sbjct: 200 SLQVLNMSHN 209
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 27/222 (12%)
Query: 332 VFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGS 391
+ DL N +S +D + L+L NN +S + S L L L +S+N L
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116
Query: 392 IPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL--SGLVPTSLENLKG 449
IPP S L L + +N++ G L + + + GN L SG P + + LK
Sbjct: 117 IPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK- 173
Query: 450 LTHLDLS--------------YNKLDVQHNKLSG-PLNELFTNSVAWNIATLNLSNNFFD 494
L +L +S N+L + HNK+ L +L S + + + +
Sbjct: 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233
Query: 495 GGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGN--LIQLEYL 534
G SLS L L + L NK + +P L + L+Q+ YL
Sbjct: 234 NG---SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
KL L LG+NQ+ GSL L L +L+L NKLS VP L +LK L + L N +
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNI 276
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
+L+ L+LGNN++TD L RL L L+L N++ +VP L L L +L LS N +
Sbjct: 133 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHI 188
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 21/166 (12%)
Query: 379 TILDLSRNELAGSIP---PEFGDSLKLQGLFLGNNQLTD-SIPGSLGRLGGLVKLNLTGN 434
T +D S +L IP P++ L+L NN+ T G +L L K+N + N
Sbjct: 14 TTVDCSNQKL-NKIPEHIPQYTAELRL-----NNNEFTVLEATGIFKKLPQLRKINFSNN 67
Query: 435 KLSGLVPTSLENLKGLTHLDLSYNKLD-VQHNKLSGPLNELFTNSVAWNIATLNLSNNFF 493
K++ + + E G+ + L+ N+L+ VQH G L L T + N T + N+ F
Sbjct: 68 KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG-LESLKTLMLRSNRITC-VGNDSF 125
Query: 494 DGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKN 539
G LS + + L+ N+ T P L L L++ N
Sbjct: 126 IG--------LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 404 GLFLGNNQLTDSIPGSL--GRLGGLVKLNLTGNKLSGLVPTS----LENLKGLTHLDLSY 457
G L N D I ++ GR G V+L G S L+P + + ++K L
Sbjct: 188 GSLLCNGLFGDGIAAAVVRGRGGTGVRLERNG---SYLIPKTEDWIMYDVKATGFHFLLD 244
Query: 458 NKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKF 517
++ L+ L EL W+ + L+ G PR L +LS VD H +F
Sbjct: 245 KRVPATMEPLAPALKEL-AGEHGWDASDLDF--YIVHAGGPRILDDLSTFLEVDPHAFRF 301
Query: 518 TGEIPPELGNLIQLEYLDVSKNML 541
+ E GN+ LD + +
Sbjct: 302 SRATLTEYGNIASAVVLDALRRLF 325
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 333 FDLSFNRLSCPIPEDLGNCTVVVY-----LLLSNNMLSSKIPGSRSRLTNLTILDLSRNE 387
DLSFN L LG+ + + L LS + + G+ L++L+ L L+ N
Sbjct: 33 LDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 388 LAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGL-VPTSLEN 446
+ F LQ L L +G L L +LN+ N + +P N
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 447 LKGLTHLDLSYNKLD 461
L L HLDLS NK+
Sbjct: 148 LTNLEHLDLSSNKIQ 162
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 59/152 (38%), Gaps = 10/152 (6%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
LDLS N L F +LQ L L ++ G+ L L L LTGN + L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG-GLPR 499
+ L L L L N P+ L T + LN+++N LP
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKT------LKELNVAHNLIQSFKLPE 143
Query: 500 SLSNLSYLTSVDLHRNKFTGEIPPELGNLIQL 531
SNL+ L +DL NK +L L Q+
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 333 FDLSFNRLSCPIPEDLGNCTVVVY-----LLLSNNMLSSKIPGSRSRLTNLTILDLSRNE 387
DLSFN L LG+ + + L LS + + G+ L++L+ L L+ N
Sbjct: 34 LDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 88
Query: 388 LAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGL-VPTSLEN 446
+ F LQ L L +G L L +LN+ N + +P N
Sbjct: 89 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 447 LKGLTHLDLSYNKLD 461
L L HLDLS NK+
Sbjct: 149 LTNLEHLDLSSNKIQ 163
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 59/152 (38%), Gaps = 10/152 (6%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
LDLS N L F +LQ L L ++ G+ L L L LTGN + L
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG-GLPR 499
+ L L L L N P+ L T + LN+++N LP
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKT------LKELNVAHNLIQSFKLPE 144
Query: 500 SLSNLSYLTSVDLHRNKFTGEIPPELGNLIQL 531
SNL+ L +DL NK +L L Q+
Sbjct: 145 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 344 IPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQ 403
IP+ L N T V L S N L + + SRL NL LDL+R ++ F +L
Sbjct: 26 IPDTLPNTTEV--LEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLN 83
Query: 404 GLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460
+ L N L SL L L LT +S L + NL+ L L L N +
Sbjct: 84 TIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHI 140
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 334 DLSFNRLSCPIPEDLGNCTVVVY-----LLLSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388
DLSFN L LG+ + + L LS + + G+ L++L+ L L+ N +
Sbjct: 58 DLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112
Query: 389 AGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGL-VPTSLENL 447
F LQ L L +G L L +LN+ N + +P NL
Sbjct: 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 172
Query: 448 KGLTHLDLSYNKL 460
L HLDLS NK+
Sbjct: 173 TNLEHLDLSSNKI 185
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 371 SRSRLTNLTILDLSRNELA---GSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLV 427
S L +L LDLSRN L+ +FG ++ L+ L L N + LG L L
Sbjct: 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVITMSSNFLG-LEQLE 423
Query: 428 KLNLTGNKLSGLVPTSLE-NLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATL 486
L+ + L + S+ +L+ L +LD+S+ V N + L+ L +A
Sbjct: 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------ 477
Query: 487 NLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKN 539
N+F + LP + L LT +DL + + P +L L+ L++S N
Sbjct: 478 --GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 70/192 (36%), Gaps = 16/192 (8%)
Query: 344 IPEDLGNCTVVV----YLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDS 399
IPE C VV Y + N KIP + T LDLS N L F
Sbjct: 20 IPESWEPCVEVVPNITYQCMELNFY--KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSF 75
Query: 400 LKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNK 459
+LQ L L ++ G+ L L L LTGN + L + L L L
Sbjct: 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135
Query: 460 LDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTG 519
L N G L L +VA N+ LP SNL+ L +DL NK
Sbjct: 136 LASLENFPIGHLKTLKELNVAHNLIQ--------SFKLPEYFSNLTNLEHLDLSSNKIQS 187
Query: 520 EIPPELGNLIQL 531
+L L Q+
Sbjct: 188 IYCTDLRVLHQM 199
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 334 DLSFNRLSCPIPEDLGNCTVVVY-----LLLSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388
DLSFN L LG+ + + L LS + + G+ L++L+ L L+ N +
Sbjct: 34 DLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 389 AGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGL-VPTSLENL 447
F LQ L L +G L L +LN+ N + +P NL
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 448 KGLTHLDLSYNKL 460
L HLDLS NK+
Sbjct: 149 TNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 14/173 (8%)
Query: 371 SRSRLTNLTILDLSRNELA---GSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLV 427
S L +L LDLSRN L+ +FG + L+ L L N + LG L L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLG-LEQLE 399
Query: 428 KLNLTGNKLSGLVPTSLE-NLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATL 486
L+ + L + S+ +L+ L +LD+S+ V N + L+ L +A
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------ 453
Query: 487 NLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKN 539
N+F + LP + L LT +DL + + P +L L+ L++S N
Sbjct: 454 --GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 56/151 (37%), Gaps = 8/151 (5%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
LDLS N L F +LQ L L ++ G+ L L L LTGN + L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRS 500
+ L L L L N G L L +VA N+ LP
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--------SFKLPEY 144
Query: 501 LSNLSYLTSVDLHRNKFTGEIPPELGNLIQL 531
SNL+ L +DL NK +L L Q+
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 370 GSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKL 429
G+ L++L+ L L+ N + F LQ L L +G L L +L
Sbjct: 71 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 130
Query: 430 NLTGNKLSGL-VPTSLENLKGLTHLDLSYNKLD 461
N+ N + +P NL L HLDLS NK+
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 59/152 (38%), Gaps = 10/152 (6%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
LDLS N L F +LQ L L ++ G+ L L L LTGN + L
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG-GLPR 499
+ L L L L N P+ L T + LN+++N LP
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKT------LKELNVAHNLIQSFKLPE 144
Query: 500 SLSNLSYLTSVDLHRNKFTGEIPPELGNLIQL 531
SNL+ L +DL NK +L L Q+
Sbjct: 145 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 370 GSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKL 429
G+ L++L+ L L+ N + F LQ L L +G L L +L
Sbjct: 72 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 131
Query: 430 NLTGNKLSGL-VPTSLENLKGLTHLDLSYNKLD 461
N+ N + +P NL L HLDLS NK+
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 59/152 (38%), Gaps = 10/152 (6%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
LDLS N L F +LQ L L ++ G+ L L L LTGN + L
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG-GLPR 499
+ L L L L N P+ L T + LN+++N LP
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKT------LKELNVAHNLIQSFKLPE 145
Query: 500 SLSNLSYLTSVDLHRNKFTGEIPPELGNLIQL 531
SNL+ L +DL NK +L L Q+
Sbjct: 146 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 333 FDLSFNRLSCPIPEDLGNCTVVVY-----LLLSNNMLSSKIPGSRSRLTNLTILDLSRNE 387
DLSFN L LG+ + + L LS + + G+ L++L+ L L+ N
Sbjct: 35 LDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 89
Query: 388 LAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGL-VPTSLEN 446
+ F LQ L L +G L L +LN+ N + +P N
Sbjct: 90 IQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 447 LKGLTHLDLSYNKLD 461
L L HLDLS NK+
Sbjct: 150 LTNLEHLDLSSNKIQ 164
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 59/152 (38%), Gaps = 10/152 (6%)
Query: 381 LDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440
LDLS N L F +LQ L L ++ G+ L L L LTGN + L
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG-GLPR 499
+ L L L L N P+ L T + LN+++N LP
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLEN---FPIGHLKT------LKELNVAHNLIQSFKLPE 145
Query: 500 SLSNLSYLTSVDLHRNKFTGEIPPELGNLIQL 531
SNL+ L +DL NK +L L Q+
Sbjct: 146 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 20/197 (10%)
Query: 282 LSLWKNSKNLIEFSA-----ASNLLEGYLPW-EIGNAIALERLVKIHDLSFIQH--HGVF 333
L L +NS IE A + N LE + W + + A E L K+ +L + +
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163
Query: 334 DLSFNRLSCPIPEDLGNCTVVVYL------------LLSNNMLSSKIPGSRSRLTNLTIL 381
+FNR+ + DLG + Y+ L+ M + K + + L L L
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223
Query: 382 DLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVP 441
++S N P F L+ L++ N+Q++ + L LV+LNL N LS L
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283
Query: 442 TSLENLKGLTHLDLSYN 458
L+ L L L +N
Sbjct: 284 DLFTPLRYLVELHLHHN 300
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 375 LTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGN 434
L+NL +L L N++ +I P G + LQ L +GNNQ+ D P L L L L N
Sbjct: 134 LSNLQVLYLDLNQIT-NISPLAGLT-NLQYLSIGNNQVNDLTP--LANLSKLTTLRADDN 189
Query: 435 KLSGLVPTSLENLKGLTHLDLSYNKL 460
K+S + P L +L L + L N++
Sbjct: 190 KISDISP--LASLPNLIEVHLKDNQI 213
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 48 LSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFT------GQLPPEIGELSLLEIFSS 101
LSHL G + L + F G+ T LP I L+ L S
Sbjct: 103 LSHLQHXTIDAAG-----LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157
Query: 102 PSCSITGPLPEELSNYGSS----GILNLGSTQLN----GSIPAELGKCENLKSV 147
+C LPE L++ +S G++NL S +L S+PA + +NLKS+
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 328 QHHGVFDLSFNRLSCP----IPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDL 383
+H G+ +L RL +P + N + L + N+ LS+ P L L LDL
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH-LPKLEELDL 236
Query: 384 SRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTG 433
+ PP FG L+ L L + ++P + RL L KL+L G
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 375 LTNLTILDLSRNELAGSIPPEFGDSLK-LQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTG 433
+ NL+ L+L N +P D L+ L+ + G+N+L G G++ L +LNL
Sbjct: 146 MRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLAS 203
Query: 434 NKLSGLVPTSLENLKGLTHLDLSYNKLDV 462
N+L + + L L + L N D
Sbjct: 204 NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 232
>pdb|3HBA|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase
(Sden_2705) From Shewanella Denitrificans Os217 At 2.00
A Resolution
pdb|3HBA|B Chain B, Crystal Structure Of A Putative Phosphosugar Isomerase
(Sden_2705) From Shewanella Denitrificans Os217 At 2.00
A Resolution
Length = 334
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 46 QSLSHLDVS-NNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIF 99
+ LS LDV + YGS +I N+K + ++Q + + P I L+LL+ F
Sbjct: 252 KKLSILDVCIRDESYGSHVEQIANVKQRGANLIHLHQTSADIHPRIAPLALLQRF 306
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 42/265 (15%)
Query: 228 SLVEINLDGNLLSG-------TIEDLVLGNNHIHGSIPE--YLSELPLVVLDLDSNNFTG 278
+L + NLDG +LSG ++E LVL +N+I P +L+ VLDL N
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168
Query: 279 IIP---LSLWKNSKNLIEFSAAS--NLLEGYLPWE-IGNAIALERLVKIHDLSFIQHHGV 332
I L+ L+ S+ + ++ E +L WE GN + +
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL----------- 217
Query: 333 FDLSFNRLSCPIPEDLGNC---TVVVYLLLSN--NMLSS------KIPGSRS----RLTN 377
DLS N + + + T + L+LSN NM SS K P + + +
Sbjct: 218 -DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276
Query: 378 LTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLS 437
+ DLS++++ + F L+ L L N++ + L L +L L N+L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 438 GLVPTSLENLKGLTHLDLSYNKLDV 462
+ + L L + L N D
Sbjct: 337 SVPDGIFDRLTSLQKIWLHTNPWDC 361
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 80/209 (38%), Gaps = 32/209 (15%)
Query: 392 IPPEFGDSLK-LQGLFLGNNQLTDSI---PGSLGRLGGLVKLNLTGNKLSGLVPTS--LE 445
+P F LK L+ L L N + + G L L L+ N L + T L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 446 NLKGLTHLDLSYNKLDVQHNKLSGPLNELFTN-----------SVAWNIATLNLSNNFFD 494
LK LT LD+S N + P F N + + L++SNN D
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD 444
Query: 495 G---GLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKIC- 550
LPR L + + RNK + P+ L + +S+N L +P I
Sbjct: 445 SFSLFLPR-------LQELYISRNKL--KTLPDASLFPVLLVMKISRNQL-KSVPDGIFD 494
Query: 551 RLSNLLYLSFEENRFAVLGINRLDYVKYW 579
RL++L + N + R+DY+ W
Sbjct: 495 RLTSLQKIWLHTNPWDC-SCPRIDYLSRW 522
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 385 RNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSL 444
R+ SIP G + ++ L L N++T G L L L L ++++ + +
Sbjct: 13 RSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 70
Query: 445 ENLKGLTHLDLSYNKLDVQHNKLSGPLNEL 474
+L L HLDLS N L + GPL+ L
Sbjct: 71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 385 RNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSL 444
R+ SIP G + ++ L L N++T G L L L L ++++ + +
Sbjct: 39 RSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 96
Query: 445 ENLKGLTHLDLSYNKLDVQHNKLSGPLNEL 474
+L L HLDLS N L + GPL+ L
Sbjct: 97 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,455,598
Number of Sequences: 62578
Number of extensions: 671790
Number of successful extensions: 2361
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1484
Number of HSP's gapped (non-prelim): 483
length of query: 587
length of database: 14,973,337
effective HSP length: 104
effective length of query: 483
effective length of database: 8,465,225
effective search space: 4088703675
effective search space used: 4088703675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)