Query 045935
Match_columns 587
No_of_seqs 221 out of 2366
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 07:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.8E-55 4E-60 492.6 33.1 512 1-567 73-585 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-52 2.3E-57 470.4 32.2 507 1-564 97-605 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.3E-36 7.2E-41 286.7 10.6 392 97-563 55-449 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.7E-36 3.6E-41 288.7 4.9 366 22-457 79-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 8.6E-39 1.9E-43 291.2 -13.4 473 22-566 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.3E-38 2.9E-43 289.9 -13.5 504 2-565 50-563 (565)
7 KOG0618 Serine/threonine phosp 100.0 2.2E-33 4.7E-38 281.6 -0.8 500 2-563 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.1E-32 6.7E-37 273.4 -5.4 495 25-583 2-506 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.3E-31 5E-36 255.8 -2.4 386 18-456 4-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4.8E-31 1E-35 253.6 -2.0 369 67-541 4-374 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.5E-21 3.2E-26 219.3 30.9 348 37-459 549-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.5E-21 3.2E-26 219.4 27.4 160 62-239 550-716 (1153)
13 KOG4237 Extracellular matrix p 99.9 6.8E-24 1.5E-28 194.0 -6.3 201 371-582 269-493 (498)
14 KOG4237 Extracellular matrix p 99.8 3E-23 6.5E-28 189.8 -4.5 129 24-153 70-199 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 7.9E-18 1.7E-22 175.6 16.9 163 352-548 302-464 (788)
16 PRK15387 E3 ubiquitin-protein 99.7 3E-17 6.6E-22 171.3 16.7 162 330-525 304-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 5.9E-19 1.3E-23 172.9 -2.1 230 1-240 2-263 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 6.2E-19 1.3E-23 172.8 -4.0 214 347-565 76-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 2.8E-16 6.1E-21 165.3 12.9 243 2-302 183-428 (754)
20 KOG0617 Ras suppressor protein 99.6 6.3E-18 1.4E-22 137.2 -3.2 178 19-216 31-212 (264)
21 PRK15370 E3 ubiquitin-protein 99.6 2.6E-15 5.7E-20 158.0 14.6 181 22-240 179-359 (754)
22 KOG0617 Ras suppressor protein 99.6 2.5E-17 5.4E-22 133.8 -5.3 164 43-225 30-194 (264)
23 KOG1909 Ran GTPase-activating 99.3 1.6E-13 3.4E-18 125.0 -3.4 244 14-277 23-311 (382)
24 KOG1909 Ran GTPase-activating 99.2 8.9E-13 1.9E-17 120.1 -1.9 140 422-566 155-311 (382)
25 KOG3207 Beta-tubulin folding c 99.2 2E-12 4.4E-17 121.1 -0.1 214 349-571 118-344 (505)
26 KOG3207 Beta-tubulin folding c 99.2 3.2E-12 6.9E-17 119.8 -0.5 211 18-240 118-339 (505)
27 KOG1259 Nischarin, modulator o 99.1 1.2E-11 2.6E-16 110.3 1.6 130 424-568 284-414 (490)
28 PF14580 LRR_9: Leucine-rich r 99.1 7.8E-11 1.7E-15 101.0 6.1 128 17-149 15-147 (175)
29 KOG0532 Leucine-rich repeat (L 99.1 1.1E-12 2.4E-17 126.8 -5.8 181 374-572 73-253 (722)
30 KOG0532 Leucine-rich repeat (L 99.1 4.3E-12 9.4E-17 122.8 -3.7 169 50-240 79-247 (722)
31 COG4886 Leucine-rich repeat (L 99.1 1.7E-10 3.7E-15 116.3 6.5 193 25-240 97-290 (394)
32 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.4E-15 97.9 5.0 108 43-155 16-126 (175)
33 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.6E-15 104.0 0.1 129 94-241 284-413 (490)
34 COG4886 Leucine-rich repeat (L 98.9 1.4E-09 3.1E-14 109.5 7.4 198 50-283 97-296 (394)
35 PF13855 LRR_8: Leucine rich r 98.9 6.6E-10 1.4E-14 78.2 2.7 61 505-565 1-61 (61)
36 KOG4658 Apoptotic ATPase [Sign 98.9 1.4E-09 3.1E-14 117.0 5.3 204 19-240 521-730 (889)
37 PLN03150 hypothetical protein; 98.9 4.2E-09 9.1E-14 111.1 8.3 109 22-131 419-528 (623)
38 PF13855 LRR_8: Leucine rich r 98.8 2.5E-09 5.4E-14 75.2 2.9 61 481-541 1-61 (61)
39 PLN03150 hypothetical protein; 98.8 1.3E-08 2.7E-13 107.5 9.0 109 47-155 419-528 (623)
40 KOG2120 SCF ubiquitin ligase, 98.8 6.7E-11 1.4E-15 105.5 -7.9 178 377-563 186-373 (419)
41 KOG4658 Apoptotic ATPase [Sign 98.7 6.6E-09 1.4E-13 112.0 3.9 107 177-299 543-652 (889)
42 KOG2120 SCF ubiquitin ligase, 98.6 2.6E-10 5.7E-15 101.8 -8.0 207 353-565 186-399 (419)
43 KOG0531 Protein phosphatase 1, 98.6 3.4E-09 7.4E-14 106.9 -1.7 128 19-154 70-198 (414)
44 KOG1859 Leucine-rich repeat pr 98.6 1.7E-09 3.6E-14 108.1 -4.3 110 345-461 102-222 (1096)
45 KOG0531 Protein phosphatase 1, 98.6 1.2E-08 2.5E-13 103.0 -0.1 210 334-566 78-290 (414)
46 KOG4341 F-box protein containi 98.5 1E-09 2.2E-14 102.8 -8.0 86 374-459 292-383 (483)
47 COG5238 RNA1 Ran GTPase-activa 98.5 2.9E-08 6.3E-13 87.8 0.2 214 18-240 27-285 (388)
48 KOG2982 Uncharacterized conser 98.4 4.3E-08 9.4E-13 87.9 -0.6 62 482-543 200-263 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.3 5.2E-08 1.1E-12 86.2 -1.7 187 45-240 29-255 (388)
50 KOG4341 F-box protein containi 98.3 5.9E-09 1.3E-13 97.8 -8.1 134 399-539 293-436 (483)
51 KOG1859 Leucine-rich repeat pr 98.2 2.9E-07 6.3E-12 92.6 0.6 165 393-573 102-299 (1096)
52 KOG4579 Leucine-rich repeat (L 98.2 1.2E-07 2.6E-12 75.0 -2.7 80 22-104 54-133 (177)
53 KOG4579 Leucine-rich repeat (L 98.1 1.4E-07 3.1E-12 74.6 -3.0 87 482-571 54-141 (177)
54 KOG2982 Uncharacterized conser 98.1 1.3E-06 2.9E-11 78.6 2.1 82 351-432 198-287 (418)
55 PF13306 LRR_5: Leucine rich r 98.1 9E-06 1.9E-10 67.5 6.9 124 14-144 5-128 (129)
56 PRK15386 type III secretion pr 98.0 1.9E-05 4.2E-10 76.6 8.9 137 349-515 49-187 (426)
57 PF12799 LRR_4: Leucine Rich r 98.0 2.5E-06 5.5E-11 54.6 1.9 37 530-567 2-38 (44)
58 PF12799 LRR_4: Leucine Rich r 97.9 7.6E-06 1.7E-10 52.4 2.0 36 506-542 2-37 (44)
59 PF13306 LRR_5: Leucine rich r 97.9 2E-05 4.4E-10 65.3 5.1 124 418-580 6-129 (129)
60 KOG3665 ZYG-1-like serine/thre 97.7 5.5E-06 1.2E-10 87.4 -0.8 38 423-460 147-185 (699)
61 KOG1644 U2-associated snRNP A' 97.7 0.00011 2.4E-09 62.8 6.5 80 23-106 21-100 (233)
62 KOG1644 U2-associated snRNP A' 97.6 5.6E-05 1.2E-09 64.6 4.0 105 448-563 42-150 (233)
63 KOG3665 ZYG-1-like serine/thre 97.6 2.1E-05 4.5E-10 83.2 1.5 158 46-212 122-284 (699)
64 KOG2739 Leucine-rich acidic nu 97.5 5.2E-05 1.1E-09 67.7 1.7 68 13-83 35-104 (260)
65 PRK15386 type III secretion pr 97.4 0.0014 3E-08 64.0 10.5 135 66-237 48-187 (426)
66 KOG1947 Leucine rich repeat pr 97.0 7.5E-05 1.6E-09 77.8 -2.4 187 18-205 185-389 (482)
67 KOG1947 Leucine rich repeat pr 97.0 0.00018 3.8E-09 75.0 0.2 111 348-458 210-331 (482)
68 KOG2123 Uncharacterized conser 96.8 0.00021 4.4E-09 64.3 -1.3 86 482-571 20-106 (388)
69 KOG2739 Leucine-rich acidic nu 96.7 0.0012 2.6E-08 59.2 3.0 67 501-567 61-130 (260)
70 KOG2123 Uncharacterized conser 96.4 0.00015 3.3E-09 65.0 -4.7 78 22-104 20-98 (388)
71 KOG4308 LRR-containing protein 96.3 2.4E-05 5.3E-10 79.0 -11.7 185 354-542 89-303 (478)
72 KOG3864 Uncharacterized conser 94.9 0.0036 7.8E-08 53.9 -1.7 81 482-562 102-185 (221)
73 PF00560 LRR_1: Leucine Rich R 94.6 0.014 3.1E-07 30.8 0.7 12 507-518 2-13 (22)
74 PF00560 LRR_1: Leucine Rich R 94.4 0.015 3.3E-07 30.7 0.5 21 530-551 1-21 (22)
75 KOG4308 LRR-containing protein 94.2 0.00067 1.4E-08 68.8 -9.3 192 377-571 88-308 (478)
76 KOG3864 Uncharacterized conser 93.6 0.01 2.2E-07 51.2 -1.7 34 402-435 103-136 (221)
77 smart00369 LRR_TYP Leucine-ric 92.7 0.11 2.3E-06 28.7 2.1 23 20-43 1-23 (26)
78 smart00370 LRR Leucine-rich re 92.7 0.11 2.3E-06 28.7 2.1 23 20-43 1-23 (26)
79 smart00370 LRR Leucine-rich re 92.1 0.069 1.5E-06 29.5 0.9 21 553-573 2-22 (26)
80 smart00369 LRR_TYP Leucine-ric 92.1 0.069 1.5E-06 29.5 0.9 21 553-573 2-22 (26)
81 PF13504 LRR_7: Leucine rich r 91.9 0.11 2.3E-06 25.4 1.2 13 22-34 2-14 (17)
82 KOG0473 Leucine-rich repeat pr 90.6 0.0031 6.8E-08 55.3 -8.3 88 15-106 36-123 (326)
83 PF13516 LRR_6: Leucine Rich r 90.6 0.048 1E-06 29.4 -0.8 19 553-571 2-20 (24)
84 KOG0473 Leucine-rich repeat pr 88.2 0.02 4.4E-07 50.5 -5.2 81 482-565 43-123 (326)
85 KOG4242 Predicted myosin-I-bin 86.2 6.9 0.00015 39.0 9.9 118 425-542 355-481 (553)
86 KOG4242 Predicted myosin-I-bin 80.1 6.5 0.00014 39.2 7.1 256 288-569 164-484 (553)
87 smart00365 LRR_SD22 Leucine-ri 72.0 2.4 5.2E-05 23.3 1.1 16 553-568 2-17 (26)
88 smart00368 LRR_RI Leucine rich 71.6 1.2 2.5E-05 25.1 -0.1 17 554-570 3-19 (28)
89 smart00364 LRR_BAC Leucine-ric 69.2 3.3 7.2E-05 22.7 1.3 13 482-494 3-15 (26)
90 smart00367 LRR_CC Leucine-rich 61.9 5.6 0.00012 21.7 1.4 12 528-539 1-12 (26)
91 KOG3763 mRNA export factor TAP 53.7 6.8 0.00015 39.9 1.3 60 482-543 219-284 (585)
92 KOG3763 mRNA export factor TAP 51.1 7.7 0.00017 39.5 1.2 68 502-570 215-287 (585)
93 TIGR00864 PCC polycystin catio 22.3 58 0.0013 40.7 2.3 32 3-34 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-55 Score=492.63 Aligned_cols=512 Identities=35% Similarity=0.523 Sum_probs=427.4
Q ss_pred CcccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEeccc
Q 045935 1 FRYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGIN 80 (587)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 80 (587)
+|+|+++.+++.++.+|..+++|++|+|++|.+.+.+|.+.+.++++|++|++++|.+.+..|. ..+++|++|++++|
T Consensus 73 ~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n 150 (968)
T PLN00113 73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN 150 (968)
T ss_pred EEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC
Confidence 3789999999999999999999999999999999899977788999999999999999877764 56899999999999
Q ss_pred ccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCc
Q 045935 81 QFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPE 160 (587)
Q Consensus 81 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 160 (587)
.+.+..|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+
T Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---- 226 (968)
T PLN00113 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG---- 226 (968)
T ss_pred cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC----
Confidence 9998899999999999999999999998999999999999999999999998899999999999999999999653
Q ss_pred ccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 161 QLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 161 ~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
.+|..+.++++|++|++++|.+++..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 227 ---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 227 ---------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ---------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 45566778889999999999998888999999999999999999999889999999999999999988765
Q ss_pred cccccccccccccccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHH
Q 045935 241 GTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLV 319 (587)
Q Consensus 241 ~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~ 319 (587)
+ ..|..+..++ |+.+++++|.+.+..|..+.. +++|+.+++.+|.+.+..|..+..+..+
T Consensus 298 ~--------------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L---- 358 (968)
T PLN00113 298 G--------------EIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNL---- 358 (968)
T ss_pred c--------------CCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCC----
Confidence 3 4566667777 888888888887777665554 7888888888888777666655554444
Q ss_pred hhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCC
Q 045935 320 KIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDS 399 (587)
Q Consensus 320 ~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 399 (587)
+.++++.|.+.+..|..+..++.++.|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+
T Consensus 359 -----------~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 359 -----------TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred -----------cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 444888888877777777777888888888888877777777778888888888888877777778888
Q ss_pred CCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcc
Q 045935 400 LKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSV 479 (587)
Q Consensus 400 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~ 479 (587)
+.|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+ ..++|++|++++|.+. +..+..+....
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~-------~~~~~~~~~l~ 499 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFS-------GAVPRKLGSLS 499 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccC-------CccChhhhhhh
Confidence 888888888888887777777778888888888888776666544 3578888888886543 34444555544
Q ss_pred cccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCcccc
Q 045935 480 AWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLS 559 (587)
Q Consensus 480 ~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 559 (587)
+|+.|++++|.+.+..|..+.++++|++|++++|.+++.+|..+..+++|++|++++|++.+.+|..+.++++|+.++
T Consensus 500 --~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 500 --ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred --ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 788888888888877888888888888888888888877888888888888888888888877888888888888888
Q ss_pred CCCCccee
Q 045935 560 FEENRFAV 567 (587)
Q Consensus 560 l~~n~i~~ 567 (587)
+++|++.+
T Consensus 578 ls~N~l~~ 585 (968)
T PLN00113 578 ISHNHLHG 585 (968)
T ss_pred ccCCccee
Confidence 88888775
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-52 Score=470.40 Aligned_cols=507 Identities=35% Similarity=0.518 Sum_probs=452.2
Q ss_pred CcccCCCccccccCcccc-ccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecc
Q 045935 1 FRYLSGNVLNGTVPRQIG-ELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGI 79 (587)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 79 (587)
+|+|++|.+++.+|..+. ++++|++|++++|.+.+.+|. ..+++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence 478999999999998766 999999999999999988883 5689999999999999988999999999999999999
Q ss_pred cccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCC
Q 045935 80 NQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLP 159 (587)
Q Consensus 80 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 159 (587)
|.+.+..|..+.++++|++|++++|.+++.+|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--- 250 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG--- 250 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc---
Confidence 99988999999999999999999999999999999999999999999999998999999999999999999999653
Q ss_pred cccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCccc
Q 045935 160 EQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLL 239 (587)
Q Consensus 160 ~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 239 (587)
.+|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 251 ----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 251 ----------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ----------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 4566677889999999999999888899999999999999999999989999999999999999998876
Q ss_pred ccccccccccccccccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHH
Q 045935 240 SGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERL 318 (587)
Q Consensus 240 ~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l 318 (587)
.+ ..|..+..++ |+.+++++|.+.+.+|..+.. +++|+.+++++|.+.+..|..+..+..+
T Consensus 321 ~~--------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L--- 382 (968)
T PLN00113 321 TG--------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNL--- 382 (968)
T ss_pred CC--------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCC---
Confidence 53 4566778888 999999999999888877665 8999999999999988877766655444
Q ss_pred HhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccC
Q 045935 319 VKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGD 398 (587)
Q Consensus 319 ~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 398 (587)
+.++++.|.+.+..|..+..+++|+.|++++|.++...+..+..++.|+.+++++|.+.+..+..+..
T Consensus 383 ------------~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 383 ------------FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred ------------CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence 44599999999889999999999999999999998888888899999999999999999888888889
Q ss_pred CCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhc
Q 045935 399 SLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNS 478 (587)
Q Consensus 399 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~ 478 (587)
+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+..|..+..+++|++|++++|.+. +..+..+...
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~p~~~~~l 522 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS-------GEIPDELSSC 522 (968)
T ss_pred CCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce-------eeCChHHcCc
Confidence 9999999999999987777665 4689999999999999888889999999999999996553 4566666666
Q ss_pred ccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccc
Q 045935 479 VAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYL 558 (587)
Q Consensus 479 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 558 (587)
. +|++|++++|.+++..|..|..+++|+.|++++|++++.+|..+.++++|+.|++++|++.+.+|.. +....+...
T Consensus 523 ~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~ 599 (968)
T PLN00113 523 K--KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINAS 599 (968)
T ss_pred c--CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChh
Confidence 6 9999999999999999999999999999999999999999999999999999999999999888754 334455556
Q ss_pred cCCCCc
Q 045935 559 SFEENR 564 (587)
Q Consensus 559 ~l~~n~ 564 (587)
.+.+|+
T Consensus 600 ~~~~n~ 605 (968)
T PLN00113 600 AVAGNI 605 (968)
T ss_pred hhcCCc
Confidence 667776
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-36 Score=286.66 Aligned_cols=392 Identities=22% Similarity=0.226 Sum_probs=267.2
Q ss_pred cEEecCCCCCccCCcccccc--CCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcc
Q 045935 97 EIFSSPSCSITGPLPEELSN--YGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSW 174 (587)
Q Consensus 97 ~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~ 174 (587)
+.|++++..+...-...+.. .+.-+.|++++|.++...+..|.++++|+++++.+|.+. .+|..
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt--------------~IP~f 120 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT--------------RIPRF 120 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh--------------hcccc
Confidence 44555555554321112221 133467888888888778888888888888888888875 34444
Q ss_pred cccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccc
Q 045935 175 FGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIH 254 (587)
Q Consensus 175 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~ 254 (587)
.....+|++|++..|.|+....+.++.++.|+.|||+.|.|+..-...|..-.++++|+|+.|.|+.
T Consensus 121 ~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~------------- 187 (873)
T KOG4194|consen 121 GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT------------- 187 (873)
T ss_pred cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-------------
Confidence 4455578888888888887777778888889999999888885555667777788888888887762
Q ss_pred cccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceE
Q 045935 255 GSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVF 333 (587)
Q Consensus 255 ~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 333 (587)
.-...|..+. |..+.+++|+++ .+|...|+.++.|+.|++..|.|...--.++..+++++.+
T Consensus 188 -l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl--------------- 250 (873)
T KOG4194|consen 188 -LETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL--------------- 250 (873)
T ss_pred -cccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh---------------
Confidence 2334566666 888888888888 6788888888899999888888775444455555555555
Q ss_pred EccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccc
Q 045935 334 DLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLT 413 (587)
Q Consensus 334 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 413 (587)
.+..|.+...-..+|..+.++++|+++.|++......++.++++|+.|+++.|.|...-++....+++|++|+|++|.++
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 66667776556666777777777777777776666666777777777777777776666666666777777777777777
Q ss_pred cCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccC
Q 045935 414 DSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFF 493 (587)
Q Consensus 414 ~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l 493 (587)
...++.|..+..|++|.|++|++......+|..+.+|++|+|++|.+.- .+.
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~---~IE------------------------- 382 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW---CIE------------------------- 382 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE---EEe-------------------------
Confidence 6666667777777777777777765555667777777777777765531 000
Q ss_pred ccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCC
Q 045935 494 DGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEEN 563 (587)
Q Consensus 494 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 563 (587)
+....|..+++|+.|++.+|++..+...+|.+++.||+|||.+|.|..+-|.+|..+ .|++|.++.-
T Consensus 383 --Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 383 --DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred --cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 223345556666666666666664445566666666666666666665556666665 6666666544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-36 Score=288.73 Aligned_cols=366 Identities=23% Similarity=0.231 Sum_probs=252.7
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
.-++|++++|.+. .+....|.++++|+.+++.+|.++ .+|....-..+|+.|+|.+|.++..-.+.+..++.||+|++
T Consensus 79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 4456888888877 566577778888888888888777 67766666667888888888777666677778888888888
Q ss_pred CCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCC-cccccCCC
Q 045935 102 PSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLP-SWFGKWNQ 180 (587)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~-~~~~~~~~ 180 (587)
+.|.++..-...+..-.++++|++++|+|+....+.|..+.+|..|.|+.|+++ .+| ..|+++++
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit--------------tLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT--------------TLPQRSFKRLPK 222 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc--------------ccCHHHhhhcch
Confidence 888777665566766677888888888887777777777778888888888876 222 23556778
Q ss_pred CCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCcc
Q 045935 181 LDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEY 260 (587)
Q Consensus 181 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~ 260 (587)
|+.|++.+|+|.-.--.+|.++++|+.|.+.+|.+......+|..+.++++|+|+.|.+.. .-..+
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~--------------vn~g~ 288 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA--------------VNEGW 288 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh--------------hhccc
Confidence 8888888887752223457778888888888887776666777777777777777776551 11123
Q ss_pred cCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcc
Q 045935 261 LSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRL 340 (587)
Q Consensus 261 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i 340 (587)
+.+ ++.|+.|+++.|.|...-+..|. |.++|+.++++.|.+
T Consensus 289 lfg------------------------Lt~L~~L~lS~NaI~rih~d~Ws---------------ftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 289 LFG------------------------LTSLEQLDLSYNAIQRIHIDSWS---------------FTQKLKELDLSSNRI 329 (873)
T ss_pred ccc------------------------cchhhhhccchhhhheeecchhh---------------hcccceeEecccccc
Confidence 333 55555555555554443333332 333344447777777
Q ss_pred cccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCC---CCCcCccCCCCCcEEEccCcccccCCC
Q 045935 341 SCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAG---SIPPEFGDSLKLQGLFLGNNQLTDSIP 417 (587)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~ 417 (587)
+...+..|..+..|++|+++.|++......+|.++++|++||++.|.+.. ....+|..+++|++|.+.+|+++.+..
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence 66666667777777777777777776666677777777777777776542 334456677777777777777777777
Q ss_pred ccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccC
Q 045935 418 GSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSY 457 (587)
Q Consensus 418 ~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~ 457 (587)
.+|.++++|++|+|.+|.+-.+.+.+|..+ .|++|.++.
T Consensus 410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 777777777777777777777777777776 677765543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.6e-39 Score=291.16 Aligned_cols=473 Identities=30% Similarity=0.395 Sum_probs=334.5
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
.+..+++++|++. .+. ..+.++..|.+|++++|.+. ..|.+++.+..++.+++++|.+. .+|+.+.....|+.+++
T Consensus 46 ~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchh-hcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 4677788888876 444 55678888888888888887 77888888888888888888887 78888888888888888
Q ss_pred CCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCC
Q 045935 102 PSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQL 181 (587)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L 181 (587)
+++.+. ..++.++.+..+..++..+|+++ ..|+.+..+.+|..+++.+|.+.. .|...-+|+.|
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~--------------l~~~~i~m~~L 185 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA--------------LPENHIAMKRL 185 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh--------------CCHHHHHHHHH
Confidence 888877 46677888888888888888887 677777788888888888888652 23333357788
Q ss_pred CEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCccc
Q 045935 182 DSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYL 261 (587)
Q Consensus 182 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~ 261 (587)
+++|...|-++ .+|+.++++..|+.|++.+|++. ..| .|.+|..|.+++++.|+++ .+|...
T Consensus 186 ~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~---------------~lpae~ 247 (565)
T KOG0472|consen 186 KHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE---------------MLPAEH 247 (565)
T ss_pred Hhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH---------------hhHHHH
Confidence 88888888777 67778888888888888888887 666 7888888888888888776 555444
Q ss_pred C-CCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCc
Q 045935 262 S-ELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNR 339 (587)
Q Consensus 262 ~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~ 339 (587)
. +++ +..+++.+|+++ ++|..++. +.+|.++++++|.+++ .|..++++ .++.+ .+.+|.
T Consensus 248 ~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L---------------~leGNP 308 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDISS-LPYSLGNL-HLKFL---------------ALEGNP 308 (565)
T ss_pred hcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCcccc-CCcccccc-eeeeh---------------hhcCCc
Confidence 4 566 777777777777 56666655 6667777776666652 34444443 33222 444554
Q ss_pred ccccCCCCcC-----CCCcccEE----EccCccCCC----C-CCC---CCcCCCCCCeEecCCCcCCCCCCcCccCCCC-
Q 045935 340 LSCPIPEDLG-----NCTVVVYL----LLSNNMLSS----K-IPG---SRSRLTNLTILDLSRNELAGSIPPEFGDSLK- 401 (587)
Q Consensus 340 i~~~~~~~~~-----~~~~L~~L----~l~~~~~~~----~-~~~---~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~- 401 (587)
+...-.+.+. -++.|+.- .++...-.+ . ... ......+.+.|++++-+++ ..|........
T Consensus 309 lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~ 387 (565)
T KOG0472|consen 309 LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS 387 (565)
T ss_pred hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhh
Confidence 4311000000 00111110 000000000 0 001 1123356778888888777 55554444333
Q ss_pred --CcEEEccCcccccCCCccccCCCCC-cEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhc
Q 045935 402 --LQGLFLGNNQLTDSIPGSLGRLGGL-VKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNS 478 (587)
Q Consensus 402 --L~~L~L~~~~~~~~~~~~l~~~~~L-~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~ 478 (587)
+...+++.|++. ..|..+..+..+ +.+.+++|.++ -.+..+..+++|+.|++++|.+. .+|..++..
T Consensus 388 ~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln--------~LP~e~~~l 457 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN--------DLPEEMGSL 457 (565)
T ss_pred cceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh--------hcchhhhhh
Confidence 778889999887 566665555554 44666777665 55667888899999999987664 455555555
Q ss_pred ccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccc
Q 045935 479 VAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYL 558 (587)
Q Consensus 479 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 558 (587)
. .|+.|+++.|.+. ..|.++.....++.+-.++|++....+.+++++..|..||+.+|.+. .+|..+++|++|++|
T Consensus 458 v--~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hL 533 (565)
T KOG0472|consen 458 V--RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHL 533 (565)
T ss_pred h--hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEE
Confidence 5 7999999999988 88888777777787888888998666666899999999999999998 788889999999999
Q ss_pred cCCCCcce
Q 045935 559 SFEENRFA 566 (587)
Q Consensus 559 ~l~~n~i~ 566 (587)
.++||+|.
T Consensus 534 eL~gNpfr 541 (565)
T KOG0472|consen 534 ELDGNPFR 541 (565)
T ss_pred EecCCccC
Confidence 99999988
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-38 Score=289.92 Aligned_cols=504 Identities=28% Similarity=0.358 Sum_probs=376.8
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccc
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQ 81 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (587)
+.+++|.+. .+..++.++.-+.+++++.|++. ++| .+++.+..+..++.++|++. .+|..+..+..|+.++.+.|.
T Consensus 50 lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 50 LILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhccCchh-hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccc
Confidence 568889888 44466899999999999999988 788 77888999999999999988 889899999999999999998
Q ss_pred cccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcc
Q 045935 82 FTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQ 161 (587)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 161 (587)
+. .+++.++.+..|+.++..+|++. ..|.++.++.++..+++.+|.+....+..+. ++.|++||...|.+.
T Consensus 126 ~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~------ 196 (565)
T KOG0472|consen 126 LK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE------ 196 (565)
T ss_pred ee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh------
Confidence 88 77888999999999999998887 5678888999999999999998844444444 899999999888865
Q ss_pred cCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCcccc-CCCCCcEEEcCCcccc
Q 045935 162 LSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELC-NSESLVEINLDGNLLS 240 (587)
Q Consensus 162 l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 240 (587)
.+|..++.+.+|..|++..|++. ..| .|.+|..|+++.++.|.+. .+|.... +++++..|++++|+++
T Consensus 197 --------tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 197 --------TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred --------cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence 56777888889999999999987 556 6899999999999999888 5555544 7889999999999888
Q ss_pred cccccccccccccccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchh--hhHH
Q 045935 241 GTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAI--ALER 317 (587)
Q Consensus 241 ~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~l~~ 317 (587)
..|+.+.-+. +.++++++|.++ ..|..+.. + .|+.+-+.+|.++......++..+ -+++
T Consensus 266 ---------------e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 266 ---------------EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTIRREIISKGTQEVLKY 327 (565)
T ss_pred ---------------cCchHHHHhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence 7788888888 889999999888 56666655 5 888888888887655443333222 2333
Q ss_pred HHhh---cccccccccceEEccC-CcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCC--CCCCeEecCCCcCCCC
Q 045935 318 LVKI---HDLSFIQHHGVFDLSF-NRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRL--TNLTILDLSRNELAGS 391 (587)
Q Consensus 318 l~~~---~~~~~~~~l~~l~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~i~~~ 391 (587)
+.+. +..+.... -.-+. .......| ........+.|++++-.++.++.+.|... .-+..+++++|++. .
T Consensus 328 Lrs~~~~dglS~se~---~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-e 402 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEG---GTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-E 402 (565)
T ss_pred HHHhhccCCCCCCcc---cccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-h
Confidence 3221 00110000 00000 00000111 11234567888888888887666665432 23778999999987 7
Q ss_pred CCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccc
Q 045935 392 IPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPL 471 (587)
Q Consensus 392 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 471 (587)
+|..+..+..+.+.-+..++..+..+..+..+++|+.|++++|.+- .+|..+..+..|+.++++.|... ..
T Consensus 403 lPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr--------~l 473 (565)
T KOG0472|consen 403 LPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR--------ML 473 (565)
T ss_pred hhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc--------cc
Confidence 7877766666554444444444578888899999999999999876 67888888889999999997543 35
Q ss_pred hhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcC
Q 045935 472 NELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICR 551 (587)
Q Consensus 472 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 551 (587)
|.+.-... .++.+-.++|++....++.+.++.+|+.||+.+|.+. .+|..+++|++|++|++.||+++ ..+...--
T Consensus 474 P~~~y~lq--~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLm 549 (565)
T KOG0472|consen 474 PECLYELQ--TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILM 549 (565)
T ss_pred hHHHhhHH--HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhc
Confidence 55544444 7788888899999777777999999999999999998 88999999999999999999998 33333222
Q ss_pred CCCCccccCCCCcc
Q 045935 552 LSNLLYLSFEENRF 565 (587)
Q Consensus 552 l~~L~~L~l~~n~i 565 (587)
..-...+...+++|
T Consensus 550 kgT~aiL~ylrdrI 563 (565)
T KOG0472|consen 550 KGTAAILSYLRDRI 563 (565)
T ss_pred cChHHHHHHhcccC
Confidence 23344444444443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.2e-33 Score=281.62 Aligned_cols=500 Identities=27% Similarity=0.291 Sum_probs=289.8
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccc
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQ 81 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (587)
++.|.+.++ .+|..+..-..+..|+++.|-+. ..|..+..++-+|++|+++.|.+. ..|..+..+++|+.|+++.|.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 566667766 45555555555777888777766 555566666666888888888776 777777788888888888887
Q ss_pred cccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeeccccc-CCCCCCc
Q 045935 82 FTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNA-LPGSLPE 160 (587)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~ 160 (587)
+. ..|....++.+|+++.+.+|.+. ..|..+..+.+|++|+++.|.+. ..|..+..+..++.++.++|. +....-.
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~ 156 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQT 156 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccc
Confidence 76 56677778888888888877665 56777888888888888888877 667677777777777777772 1100000
Q ss_pred ccCCcc-----ccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcC
Q 045935 161 QLSELP-----LSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLD 235 (587)
Q Consensus 161 ~l~~l~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 235 (587)
.++++. +.+.++..+..++. .+++.+|.+. ...+.++++|+.|....|++..... .-++++.|+.+
T Consensus 157 ~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~ 227 (1081)
T KOG0618|consen 157 SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYAD 227 (1081)
T ss_pred cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----cCcchheeeec
Confidence 011111 11223333333333 3556555554 1234555556665555555442111 12455555555
Q ss_pred CcccccccccccccccccccccCcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhh
Q 045935 236 GNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIAL 315 (587)
Q Consensus 236 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 315 (587)
.|++. .....+....+++++++.++++ .+|.++.. +.++..+....|.+ ...+..+....++
T Consensus 228 ~n~l~---------------~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l-~~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 228 HNPLT---------------TLDVHPVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRL-VALPLRISRITSL 289 (1081)
T ss_pred cCcce---------------eeccccccccceeeecchhhhh-cchHHHHh-cccceEecccchhH-HhhHHHHhhhhhH
Confidence 55544 2222223333777777777777 45555444 77777777777766 3445555555555
Q ss_pred HHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCC-CCCeEecCCCcCCCCCCc
Q 045935 316 ERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLT-NLTILDLSRNELAGSIPP 394 (587)
Q Consensus 316 ~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~ 394 (587)
+.+ .+..|++. .+|........|++|++..|.+.......+.... +++.++.+.+.+...-..
T Consensus 290 ~~l---------------~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 290 VSL---------------SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred HHH---------------Hhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 555 55556655 3444455566667777766666543332222222 245555555555422111
Q ss_pred CccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhh
Q 045935 395 EFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNEL 474 (587)
Q Consensus 395 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 474 (587)
.-..++.|+.|.+.+|.+++.....+.+...|+.|+|++|++.......+.++..|+.|+++||.+. .++..
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~--------~Lp~t 425 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT--------TLPDT 425 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh--------hhhHH
Confidence 1223445666666666666555555556666666666666665444445566666666666665543 23344
Q ss_pred hhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccC-CCcccCCCCCCceecCCCCcccccCChhhcCCC
Q 045935 475 FTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGE-IPPELGNLIQLEYLDVSKNMLCGQIPKKICRLS 553 (587)
Q Consensus 475 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 553 (587)
...+. .|++|...+|.+. ..| .+..+++|+.+|+++|+++.. +++.... +.|++||++||.-.....+.|..+.
T Consensus 426 va~~~--~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~ 500 (1081)
T KOG0618|consen 426 VANLG--RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLK 500 (1081)
T ss_pred HHhhh--hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhh
Confidence 44444 5666666666665 455 566667777777777766632 2333222 5677777777753334445555555
Q ss_pred CCccccCCCC
Q 045935 554 NLLYLSFEEN 563 (587)
Q Consensus 554 ~L~~L~l~~n 563 (587)
.+...+++-+
T Consensus 501 ~l~~~~i~~~ 510 (1081)
T KOG0618|consen 501 SLSQMDITLN 510 (1081)
T ss_pred hhhheecccC
Confidence 5555555544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=3.1e-32 Score=273.36 Aligned_cols=495 Identities=28% Similarity=0.311 Sum_probs=350.2
Q ss_pred EEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCC
Q 045935 25 NLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSC 104 (587)
Q Consensus 25 ~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (587)
.+|.+..++. -||...+.. ..+..|++..|.+...-.+.++..-+|+.|++++|.+. ..|..++.+.+|+.|+++.|
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~-~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNN-EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred CcccccccCc-ccchhhccH-HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence 3567777777 788554443 44999999999876332344566777999999999988 88999999999999999999
Q ss_pred CCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCcc------ccCC-CCccccc
Q 045935 105 SITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELP------LSGP-LPSWFGK 177 (587)
Q Consensus 105 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~------~~~~-~~~~~~~ 177 (587)
.+. .+|.+..++.+|+++.+.+|.+. ..|..+..+.+|++|++++|.+. ..|..+..+. .+++ ....++.
T Consensus 79 ~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 79 YIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ 155 (1081)
T ss_pred hHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc
Confidence 887 56788899999999999999988 88999999999999999999975 4454444332 1122 0111222
Q ss_pred CCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCccccccccccccccccccccc
Q 045935 178 WNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSI 257 (587)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~ 257 (587)
. .++++++..+.+.+.++.....+.. .+++++|.+. . ..+..+.+|+.+..+.|.+..
T Consensus 156 ~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~---------------- 213 (1081)
T KOG0618|consen 156 T-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSE---------------- 213 (1081)
T ss_pred c-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccce----------------
Confidence 2 2556666666555555555554444 5677766655 1 123345666666666665441
Q ss_pred CcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccC
Q 045935 258 PEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSF 337 (587)
Q Consensus 258 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~ 337 (587)
-.+....++.++.++|.++...+. + ...++++++++.+.+.+.. .++..+..++.+ +...
T Consensus 214 -l~~~g~~l~~L~a~~n~l~~~~~~--p-~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l---------------~~n~ 273 (1081)
T KOG0618|consen 214 -LEISGPSLTALYADHNPLTTLDVH--P-VPLNLQYLDISHNNLSNLP-EWIGACANLEAL---------------NANH 273 (1081)
T ss_pred -EEecCcchheeeeccCcceeeccc--c-ccccceeeecchhhhhcch-HHHHhcccceEe---------------cccc
Confidence 011222277777777777632221 1 1557788888877766443 666666655555 7777
Q ss_pred CcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcC-ccCCCC-CcEEEccCcccccC
Q 045935 338 NRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPE-FGDSLK-LQGLFLGNNQLTDS 415 (587)
Q Consensus 338 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~-~~~~~~-L~~L~L~~~~~~~~ 415 (587)
|.+. .+|..+...++|+.|.+..|.++. .+....++++|++|++..|.+. ..|.. +..... |..++.+.+++...
T Consensus 274 N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 274 NRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred hhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccc
Confidence 7775 666666777778888888887764 3445566788888888888877 44443 222322 66666666666532
Q ss_pred CCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCcc
Q 045935 416 IPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG 495 (587)
Q Consensus 416 ~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ 495 (587)
....-...+.|+.|.+.+|.+++..-+.+.+.++|+.|+|++|++.. .....+.+.. .|+.|+||||+++
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-------fpas~~~kle--~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-------FPASKLRKLE--ELEELNLSGNKLT- 420 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-------CCHHHHhchH--HhHHHhcccchhh-
Confidence 22122246789999999999998877789999999999999987752 2222333334 8999999999999
Q ss_pred CCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccc-cCChhhcCCCCCccccCCCCcceecCcCchh
Q 045935 496 GLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCG-QIPKKICRLSNLLYLSFEENRFAVLGINRLD 574 (587)
Q Consensus 496 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 574 (587)
.+|+.+..|+.|+.|..-.|++. ..| .+.++++|+.+|++.|+++. .+|..... ++||+|+++||.-..++-+.|+
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~ 497 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLK 497 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhH
Confidence 88899999999999999999998 667 77899999999999999986 34444433 8999999999998888888888
Q ss_pred hhHHHHHHh
Q 045935 575 YVKYWKIFL 583 (587)
Q Consensus 575 ~~~~l~~~~ 583 (587)
.++.+..++
T Consensus 498 ~l~~l~~~~ 506 (1081)
T KOG0618|consen 498 VLKSLSQMD 506 (1081)
T ss_pred Hhhhhhhee
Confidence 777776654
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.3e-31 Score=255.80 Aligned_cols=386 Identities=27% Similarity=0.391 Sum_probs=308.1
Q ss_pred cccCCCCEEeCCCCcCCC-CcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCc
Q 045935 18 GELTQLPNLLLGNNLLSG-SLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLL 96 (587)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~-~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 96 (587)
+-++.+|-+|+++|+++| .+| ....++++++-|.|....+. .+|+.++.|.+|+||.+++|++. .+-..++.++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhh
Confidence 456778888999998884 555 66788889999999888887 78888889999999999999887 445778888999
Q ss_pred cEEecCCCCCcc-CCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcc-
Q 045935 97 EIFSSPSCSITG-PLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSW- 174 (587)
Q Consensus 97 ~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~- 174 (587)
|.+.+..|++.. .+|..+-.+..|+.||+++|++. ..|..+..-+++-.|+||+|+|. ++|..
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie--------------tIPn~l 145 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE--------------TIPNSL 145 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc--------------cCCchH
Confidence 999998887754 47888889999999999999988 77888888888999999999986 44544
Q ss_pred cccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccc
Q 045935 175 FGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIH 254 (587)
Q Consensus 175 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~ 254 (587)
|-+++.|-.||++.|++. .+|.....+.+|+.|++++|.+.......+..+++|+.|.+++.+-+ .
T Consensus 146 finLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-------------l 211 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-------------L 211 (1255)
T ss_pred HHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-------------h
Confidence 457888999999999988 67777888999999999999877555566677788888888887644 1
Q ss_pred cccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceE
Q 045935 255 GSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVF 333 (587)
Q Consensus 255 ~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 333 (587)
..+|..+..+. |..++++.|.+. .+|..++. .++|+.|++++|.++.. ......+..++.+
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~iteL-~~~~~~W~~lEtL--------------- 273 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKITEL-NMTEGEWENLETL--------------- 273 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCceeee-eccHHHHhhhhhh---------------
Confidence 26777888888 889999999887 78888887 89999999999988743 3334444555555
Q ss_pred EccCCcccccCCCCcCCCCcccEEEccCccCC-CCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCccc
Q 045935 334 DLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLS-SKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQL 412 (587)
Q Consensus 334 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~ 412 (587)
++|.|+++ .+|+++..+++|+.|...+|.+. +-+|..+..+..|+.+...+|.+. ..|..+..|++|+.|.|+.|.+
T Consensus 274 NlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 274 NLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred ccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 99999998 78999999999999999999876 335677888889999999999887 8899999999999999999988
Q ss_pred ccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeecc
Q 045935 413 TDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLS 456 (587)
Q Consensus 413 ~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~ 456 (587)
. ..|.++.-++.|+.|++.+|.-.-..|..-..-++++.-++.
T Consensus 352 i-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 352 I-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred e-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 6 688888889999999999987442333222222455544443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.8e-31 Score=253.59 Aligned_cols=369 Identities=27% Similarity=0.352 Sum_probs=252.4
Q ss_pred CCCCCCcEEEecccccc-cCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCc
Q 045935 67 GNLKNLTHFFLGINQFT-GQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLK 145 (587)
Q Consensus 67 ~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 145 (587)
+-+|-.+-+++++|.++ +.+|..+..++.++.|.+...++. .+|..++.+.+|++|.+++|++. .+.+.++.++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 34556667777888776 467777778888888887777765 46777777777777777777776 4555667777777
Q ss_pred eeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccC
Q 045935 146 SVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCN 225 (587)
Q Consensus 146 ~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 225 (587)
.+.+.+|++. ...+|..+.++..|+.||++.|++. ..|..+..-+++-.|++++|.|. .+|
T Consensus 82 sv~~R~N~LK------------nsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIP----- 142 (1255)
T KOG0444|consen 82 SVIVRDNNLK------------NSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIP----- 142 (1255)
T ss_pred HHhhhccccc------------cCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCC-----
Confidence 7777777754 2234555555556666666666555 44444444455555555555444 222
Q ss_pred CCCCcEEEcCCcccccccccccccccccccccCcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeecc
Q 045935 226 SESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYL 305 (587)
Q Consensus 226 ~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 305 (587)
..+|.++..|-.|++++|.+. .+
T Consensus 143 --------------------------------------------------------n~lfinLtDLLfLDLS~NrLe-~L 165 (1255)
T KOG0444|consen 143 --------------------------------------------------------NSLFINLTDLLFLDLSNNRLE-ML 165 (1255)
T ss_pred --------------------------------------------------------chHHHhhHhHhhhccccchhh-hc
Confidence 222222333333333333222 11
Q ss_pred cccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCC-CCCCCCCcCCCCCCeEecC
Q 045935 306 PWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLS-SKIPGSRSRLTNLTILDLS 384 (587)
Q Consensus 306 ~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 384 (587)
|..+..+..+ +.+++++|.+...-...+..+++|+.|.+++.+.+ ..+|..+..+.+|..+|++
T Consensus 166 PPQ~RRL~~L---------------qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 166 PPQIRRLSML---------------QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred CHHHHHHhhh---------------hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 1112222222 22266666655443445667788888999887744 4567788889999999999
Q ss_pred CCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCcccccc
Q 045935 385 RNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQH 464 (587)
Q Consensus 385 ~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 464 (587)
.|.+. ..|.++..+++|+.|+|++|++++ .....+...+|+.|+++.|+++ .+|.++..+++|+.|.+.+|+++..+
T Consensus 231 ~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 231 ENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred ccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 99998 889999999999999999999984 5555666789999999999998 78999999999999999999887543
Q ss_pred ccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcc
Q 045935 465 NKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNML 541 (587)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 541 (587)
+|+.++... .|+.+..++|.+. ..|..+..|..|+.|.|++|++- ..|+++.-++.|+.||++.|+=
T Consensus 308 ------iPSGIGKL~--~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 308 ------IPSGIGKLI--QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ------Cccchhhhh--hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 444555555 7777777777776 77778888888888888888776 5677777778888888887743
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.5e-21 Score=219.30 Aligned_cols=348 Identities=20% Similarity=0.194 Sum_probs=225.9
Q ss_pred cCcccccCCCCCcEEEccCCcc------ccCCCCCcCCCC-CCcEEEecccccccCCChhhhcCCCccEEecCCCCCccC
Q 045935 37 LPVSLFTNLQSLSHLDVSNNSL------YGSFPPEIGNLK-NLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGP 109 (587)
Q Consensus 37 i~~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 109 (587)
+...+|.++++|+.|.+..+.. ....|..+..++ +|+.|++.++++. .+|..+ ...+|+.|++.++++. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 4446677788888888765432 223555666654 5888888887766 566655 4678888888888776 3
Q ss_pred CccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCC
Q 045935 110 LPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSN 189 (587)
Q Consensus 110 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~ 189 (587)
++..+..+++|+.++++++......| .++.+++|++|++++|... ..+|..+.++++|+.|++++|
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L-------------~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL-------------VELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc-------------cccchhhhccCCCCEEeCCCC
Confidence 55667778888888888765433444 3677788888888877632 244555667778888888887
Q ss_pred ccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccE
Q 045935 190 QFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVV 268 (587)
Q Consensus 190 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~ 268 (587)
..-..+|..+ ++++|+.|++++|......|.. ..+|++|+++++.+. .+|..+ .++ |+.
T Consensus 692 ~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~---------------~lP~~~-~l~~L~~ 751 (1153)
T PLN03210 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE---------------EFPSNL-RLENLDE 751 (1153)
T ss_pred CCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc---------------cccccc-ccccccc
Confidence 5443555544 6788888888888654444432 357778888777655 333322 122 444
Q ss_pred EeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCc
Q 045935 269 LDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDL 348 (587)
Q Consensus 269 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~ 348 (587)
|++.++.... +... ...+ .+.. ...++.|+.+++++|.....+|..+
T Consensus 752 L~l~~~~~~~-l~~~----~~~l-------------~~~~---------------~~~~~sL~~L~Ls~n~~l~~lP~si 798 (1153)
T PLN03210 752 LILCEMKSEK-LWER----VQPL-------------TPLM---------------TMLSPSLTRLFLSDIPSLVELPSSI 798 (1153)
T ss_pred ccccccchhh-cccc----cccc-------------chhh---------------hhccccchheeCCCCCCccccChhh
Confidence 4443322110 0000 0000 0000 0112345555777776666678888
Q ss_pred CCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcE
Q 045935 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVK 428 (587)
Q Consensus 349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~ 428 (587)
.++++|+.|++++|......|... .+++|+.|++++|......|.. ..+|+.|++++|.+. ..|..+..+++|++
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~ 873 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSF 873 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCE
Confidence 888899999998886544455444 6788999999988644344432 367889999998887 46777888899999
Q ss_pred EEcCCCcCccccccccccCCCCceeeccCCc
Q 045935 429 LNLTGNKLSGLVPTSLENLKGLTHLDLSYNK 459 (587)
Q Consensus 429 L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 459 (587)
|++++|.-...++.....+++|+.+++++|.
T Consensus 874 L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 874 LDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9999876444566677788888899988875
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.5e-21 Score=219.39 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=126.5
Q ss_pred CCCCcCCCCCCcEEEeccccc------ccCCChhhhcCC-CccEEecCCCCCccCCccccccCCCCcEEEeccccCcccC
Q 045935 62 FPPEIGNLKNLTHFFLGINQF------TGQLPPEIGELS-LLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSI 134 (587)
Q Consensus 62 ~~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 134 (587)
.+.+|..|++|++|.+..+.. ...+|+.+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 445688999999999976532 235677777764 6999999998876 456666 5689999999999987 56
Q ss_pred CccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCc
Q 045935 135 PAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNF 214 (587)
Q Consensus 135 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 214 (587)
+..+..+++|+.|+++++.... .+| .++.+++|++|++++|.....+|..+.++++|+.|++++|.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~-------------~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLK-------------EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcC-------------cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 7778889999999999876332 223 25678999999999997666788899999999999999986
Q ss_pred cccccCccccCCCCCcEEEcCCccc
Q 045935 215 VSGSIPRELCNSESLVEINLDGNLL 239 (587)
Q Consensus 215 ~~~~~~~~~~~~~~L~~L~l~~~~~ 239 (587)
....+|..+ ++++|+.|++++|..
T Consensus 693 ~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 693 NLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred CcCccCCcC-CCCCCCEEeCCCCCC
Confidence 554677655 678999999988753
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=6.8e-24 Score=193.98 Aligned_cols=201 Identities=22% Similarity=0.328 Sum_probs=106.0
Q ss_pred CCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCC
Q 045935 371 SRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGL 450 (587)
Q Consensus 371 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 450 (587)
.|..+++|+++++++|.++.+-..+|.....+++|.|..|++..+....|.++..|+.|+|++|+++...|.+|....+|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 34555555555555555555555555555555555555555554444445555555555555555555555555555555
Q ss_pred ceeeccCCccccc-----------cccccccchhhhhhcccccccEEecccccCcc---CCch---------hccCCCCC
Q 045935 451 THLDLSYNKLDVQ-----------HNKLSGPLNELFTNSVAWNIATLNLSNNFFDG---GLPR---------SLSNLSYL 507 (587)
Q Consensus 451 ~~L~l~~~~i~~~-----------~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~---~~~~---------~~~~~~~L 507 (587)
.+|++-.|+..-. .....+ ......|..++.+.+++..+.+ ..|. +=..|+-+
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~----~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~ 424 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRKKSVVG----NPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCL 424 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhhCCCCC----CCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchh
Confidence 5555555542110 000000 0111123356666666655532 1111 11223333
Q ss_pred cEE-EccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhhHHHHHH
Q 045935 508 TSV-DLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVKYWKIF 582 (587)
Q Consensus 508 ~~L-~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l~~~ 582 (587)
..+ .-|+..+. .+|..+. ..-.++++.+|.+. .+|.. .+.+| .+++++|+|+.+.-..|.+++.|..+
T Consensus 425 ~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tl 493 (498)
T KOG4237|consen 425 DTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTL 493 (498)
T ss_pred hhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhhee
Confidence 322 22222333 5555554 24567888888887 56655 45667 88888888888888888888777554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=3e-23 Score=189.81 Aligned_cols=129 Identities=23% Similarity=0.264 Sum_probs=67.0
Q ss_pred CEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecc-cccccCCChhhhcCCCccEEecC
Q 045935 24 PNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGI-NQFTGQLPPEIGELSLLEIFSSP 102 (587)
Q Consensus 24 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~ 102 (587)
..+.|..|+|+ +||.++|+.+++|+.|||++|.+..+.|++|..++.|..|-+.+ |++++.-...|.++..|+.|.+.
T Consensus 70 veirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 44555555555 55555566666666666666555555555555555555554444 45553323445555555555555
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeeccccc
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNA 153 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 153 (587)
-|.+.-...+++..++++..|.+.+|.+.......|..+..++.+.+..|.
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 555554444455555555555555555443333344444444444444444
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=7.9e-18 Score=175.63 Aligned_cols=163 Identities=30% Similarity=0.327 Sum_probs=72.0
Q ss_pred CcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 045935 352 TVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNL 431 (587)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L 431 (587)
++|+.|++++|.+... +.. ...|+.|++++|.++ .+|.. ..+|+.|++++|++++ +|.. .++|+.|++
T Consensus 302 ~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~L 369 (788)
T PRK15387 302 PGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWA 369 (788)
T ss_pred cccceeECCCCccccC-CCC---cccccccccccCccc-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehh
Confidence 4455666666555432 111 124555555555554 22321 1345555555555553 2221 234555555
Q ss_pred CCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEE
Q 045935 432 TGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVD 511 (587)
Q Consensus 432 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 511 (587)
++|.+.. +|.. ..+|+.|++++|.+.. ++.. +.+|+.|++++|.++ .+|.. ..+|+.|+
T Consensus 370 s~N~L~~-LP~l---~~~L~~LdLs~N~Lt~--------LP~l-----~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~ 428 (788)
T PRK15387 370 YNNRLTS-LPAL---PSGLKELIVSGNRLTS--------LPVL-----PSELKELMVSGNRLT-SLPML---PSGLLSLS 428 (788)
T ss_pred hcccccc-Cccc---ccccceEEecCCcccC--------CCCc-----ccCCCEEEccCCcCC-CCCcc---hhhhhhhh
Confidence 5555542 2221 1345555555544321 1100 014555555555554 23321 12344455
Q ss_pred ccCcccccCCCcccCCCCCCceecCCCCcccccCChh
Q 045935 512 LHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKK 548 (587)
Q Consensus 512 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 548 (587)
+++|+++ .+|..+.++++|+.|++++|++++..+..
T Consensus 429 Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 429 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 5555554 34444445555555555555554443333
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=3e-17 Score=171.30 Aligned_cols=162 Identities=32% Similarity=0.390 Sum_probs=86.0
Q ss_pred cceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccC
Q 045935 330 HGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGN 409 (587)
Q Consensus 330 l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~ 409 (587)
|+.+++++|.+.+ +|.. ...|+.|++++|.+... +. -..+|+.|++++|.++ .+|.. .++|+.|++++
T Consensus 304 L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~ 371 (788)
T PRK15387 304 LQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYN 371 (788)
T ss_pred cceeECCCCcccc-CCCC---cccccccccccCccccc-cc---cccccceEecCCCccC-CCCCC---Ccccceehhhc
Confidence 3444666665552 2221 13455666666666532 21 1135666666666665 33322 24566666666
Q ss_pred cccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecc
Q 045935 410 NQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLS 489 (587)
Q Consensus 410 ~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 489 (587)
|.+.. ++.. ..+|+.|++++|.+.. +|.. .++|+.|++++|.+.. +|.. +.+|+.|+++
T Consensus 372 N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss--------IP~l-----~~~L~~L~Ls 430 (788)
T PRK15387 372 NRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS--------LPML-----PSGLLSLSVY 430 (788)
T ss_pred ccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC--------CCcc-----hhhhhhhhhc
Confidence 66653 3322 2456666666666653 2321 2456666666655431 1111 1156666666
Q ss_pred cccCccCCchhccCCCCCcEEEccCcccccCCCccc
Q 045935 490 NNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPEL 525 (587)
Q Consensus 490 ~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l 525 (587)
+|.++ .+|..+..+++|+.|++++|++++.++..+
T Consensus 431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 66666 566666666666666776666665444433
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=5.9e-19 Score=172.88 Aligned_cols=230 Identities=21% Similarity=0.195 Sum_probs=147.3
Q ss_pred CcccCCCccc-cccCccccccCCCCEEeCCCCcCCC----CcCcccccCCCCCcEEEccCCcccc------CCCCCcCCC
Q 045935 1 FRYLSGNVLN-GTVPRQIGELTQLPNLLLGNNLLSG----SLPVSLFTNLQSLSHLDVSNNSLYG------SFPPEIGNL 69 (587)
Q Consensus 1 ~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~----~i~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l 69 (587)
.|+|.++.++ ......+..+++|++++++++.+.+ .++ ..+...+.+++++++++.+.. ..+..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4788888888 4556677788889999999998853 244 456677889999998887652 122346677
Q ss_pred CCCcEEEecccccccCCChhhhcCCC---ccEEecCCCCCccC----CccccccC-CCCcEEEeccccCccc----CCcc
Q 045935 70 KNLTHFFLGINQFTGQLPPEIGELSL---LEIFSSPSCSITGP----LPEELSNY-GSSGILNLGSTQLNGS----IPAE 137 (587)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~----~~~~l~~~-~~L~~L~l~~~~~~~~----~~~~ 137 (587)
++|++|++++|.+....+..+..+.. |++|++++|.+++. +...+..+ ++|+.|++++|.+++. ....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 88888888888776555555655555 88888888877632 22345555 7788888888877632 2334
Q ss_pred ccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCC----CCccccCCCcccEEecCCC
Q 045935 138 LGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGR----IPPEIGSCSMLKYISLSSN 213 (587)
Q Consensus 138 l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~ 213 (587)
+..+++|++|++++|.+.+.... .++..+...++|++|++++|.+++. ....+..+++|++|++++|
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~---------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIR---------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHH---------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 55667788888877776531110 1112233446777777777776532 2233455677777777777
Q ss_pred ccccccCccccC-----CCCCcEEEcCCcccc
Q 045935 214 FVSGSIPRELCN-----SESLVEINLDGNLLS 240 (587)
Q Consensus 214 ~~~~~~~~~~~~-----~~~L~~L~l~~~~~~ 240 (587)
.+++.....+.. .+.|++|++++|.++
T Consensus 232 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 232 NLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred cCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 766432222221 256777777666654
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=6.2e-19 Score=172.75 Aligned_cols=214 Identities=24% Similarity=0.275 Sum_probs=118.0
Q ss_pred CcCCCCcccEEEccCccCCCCCCCCCcCC---CCCCeEecCCCcCCC----CCCcCccCC-CCCcEEEccCcccccC---
Q 045935 347 DLGNCTVVVYLLLSNNMLSSKIPGSRSRL---TNLTILDLSRNELAG----SIPPEFGDS-LKLQGLFLGNNQLTDS--- 415 (587)
Q Consensus 347 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~i~~----~~~~~~~~~-~~L~~L~L~~~~~~~~--- 415 (587)
.+..+++|+.|++++|.+....+..+..+ ++|++|++++|.+.+ .....+..+ ++|+.|++++|.+++.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 34456677777777777654333333222 337777777776652 112233444 6777777777776532
Q ss_pred -CCccccCCCCCcEEEcCCCcCccc----cccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEeccc
Q 045935 416 -IPGSLGRLGGLVKLNLTGNKLSGL----VPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSN 490 (587)
Q Consensus 416 -~~~~l~~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 490 (587)
....+..++.|++|++++|.+.+. .+..+..+++|++|++++|.+.- .....+...+.... +|+.|++++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~---~~~~~l~~~~~~~~--~L~~L~ls~ 230 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD---EGASALAETLASLK--SLEVLNLGD 230 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh---HHHHHHHHHhcccC--CCCEEecCC
Confidence 223345566777777777776532 12234445677777777765531 11111222222222 677777777
Q ss_pred ccCccCCchhcc-----CCCCCcEEEccCccccc----CCCcccCCCCCCceecCCCCccccc----CChhhcCC-CCCc
Q 045935 491 NFFDGGLPRSLS-----NLSYLTSVDLHRNKFTG----EIPPELGNLIQLEYLDVSKNMLCGQ----IPKKICRL-SNLL 556 (587)
Q Consensus 491 ~~l~~~~~~~~~-----~~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l-~~L~ 556 (587)
|.+++.....+. ..+.|++|++++|.++. .+...+..+++|+++++++|.+... ....+... +.|+
T Consensus 231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence 776642222221 13677777777777752 1234445556777777777777643 23333344 5677
Q ss_pred cccCCCCcc
Q 045935 557 YLSFEENRF 565 (587)
Q Consensus 557 ~L~l~~n~i 565 (587)
++++.+|++
T Consensus 311 ~~~~~~~~~ 319 (319)
T cd00116 311 SLWVKDDSF 319 (319)
T ss_pred hcccCCCCC
Confidence 777777764
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=2.8e-16 Score=165.28 Aligned_cols=243 Identities=26% Similarity=0.371 Sum_probs=133.0
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccc
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQ 81 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (587)
|+|+++.++ .+|..+. ++|+.|++++|.+. .+|...+ ++|++|++++|.+. .+|..+. ++|+.|++++|.
T Consensus 183 L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 183 LRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINR 252 (754)
T ss_pred EEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCc
Confidence 455566665 4555443 35667777777766 5663322 46677777776665 4444332 356777777766
Q ss_pred cccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcc
Q 045935 82 FTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQ 161 (587)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 161 (587)
+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.+..
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~----- 318 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA----- 318 (754)
T ss_pred cC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-----
Confidence 66 4555443 35667777766666 3444432 36677777776666 3333322 356666666666542
Q ss_pred cCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCccccc
Q 045935 162 LSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSG 241 (587)
Q Consensus 162 l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 241 (587)
+|..+ .++|+.|++++|.++. +|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|.+.
T Consensus 319 ---------LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt- 380 (754)
T PRK15370 319 ---------LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT- 380 (754)
T ss_pred ---------CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-
Confidence 11111 1466677777776663 44433 256777777777666 4454442 56667777666655
Q ss_pred ccccccccccccccccCcccCCCCccEEeccCCCCccccchhhh---hcCCccceeccccccee
Q 045935 242 TIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLW---KNSKNLIEFSAASNLLE 302 (587)
Q Consensus 242 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~ 302 (587)
.+|..+.. .++.|++++|++. .+|..+. ...+.+..+++.+|.+.
T Consensus 381 --------------~LP~~l~~-sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 381 --------------NLPENLPA-ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --------------CCCHhHHH-HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 23322211 1566666666665 3333221 12355556666655543
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=6.3e-18 Score=137.24 Aligned_cols=178 Identities=25% Similarity=0.448 Sum_probs=113.2
Q ss_pred ccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccE
Q 045935 19 ELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEI 98 (587)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 98 (587)
++.++..|.||+|++. .+| ..++.+.+|+.|+++.|.+. ..|..++.+++|++|++..|++. ..|.+|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 4455666666777666 555 44566677777777776666 66666667777777777766666 66677777777777
Q ss_pred EecCCCCCcc-CCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCccccc
Q 045935 99 FSSPSCSITG-PLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGK 177 (587)
Q Consensus 99 L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~ 177 (587)
|++.+|++.. .+|..|..++.|+.|.+++|.+. .+|..++++.+|+.|.+.+|.+- .+|..++.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll--------------~lpkeig~ 171 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL--------------SLPKEIGD 171 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh--------------hCcHHHHH
Confidence 7776666643 25666666666777777777666 56666677777777777776653 34555666
Q ss_pred CCCCCEEeCCCCccCCCCCccccCCC---cccEEecCCCccc
Q 045935 178 WNQLDSLLLSSNQFVGRIPPEIGSCS---MLKYISLSSNFVS 216 (587)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~ 216 (587)
+++|++|.+.+|+++ .+|..++++. +-+...+.+|...
T Consensus 172 lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred HHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 667777777777766 4555555432 2334445555433
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=2.6e-15 Score=157.99 Aligned_cols=181 Identities=23% Similarity=0.365 Sum_probs=110.2
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
+...|+++++.++ ++|.. + .++|+.|++++|.+. .+|..+. ++|++|++++|.++ .+|..+. ..|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~-I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPAC-I--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcc-c--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 4567788777777 67722 2 256778888888777 4554443 47788888877776 4555443 36777777
Q ss_pred CCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCC
Q 045935 102 PSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQL 181 (587)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L 181 (587)
++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.+.. +|..+ .+.|
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~--------------LP~~l--p~sL 306 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT--------------LPAHL--PSGI 306 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc--------------Ccccc--hhhH
Confidence 777776 4455443 46777777777776 4454442 467777777776642 11111 1356
Q ss_pred CEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 182 DSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 182 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
+.|++++|.++. +|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|.+.
T Consensus 307 ~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 307 THLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred HHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC
Confidence 667777776662 33322 256677777777666 3444442 56666666666554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=2.5e-17 Score=133.80 Aligned_cols=164 Identities=30% Similarity=0.489 Sum_probs=139.1
Q ss_pred cCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcE
Q 045935 43 TNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGI 122 (587)
Q Consensus 43 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 122 (587)
.++.+++.|.+|+|+++ ..|..+..+.+|++|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|++++-|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34677788899999998 77778899999999999999988 88899999999999999988876 67899999999999
Q ss_pred EEeccccCcc-cCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccC
Q 045935 123 LNLGSTQLNG-SIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGS 201 (587)
Q Consensus 123 L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 201 (587)
||++.|.+.. ..|+.|..+..|+.|.+++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe--------------~lp~dvg~lt~lqil~lrdndll-~lpkeig~ 171 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--------------ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD 171 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc--------------cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence 9999988764 47788888889999999999875 56677888899999999998876 67888899
Q ss_pred CCcccEEecCCCccccccCccccC
Q 045935 202 CSMLKYISLSSNFVSGSIPRELCN 225 (587)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~~~~~~ 225 (587)
+..|++|.+.+|+++ .+|..++.
T Consensus 172 lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHHHHHhcccceee-ecChhhhh
Confidence 999999999999988 66644443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=1.6e-13 Score=124.95 Aligned_cols=244 Identities=17% Similarity=0.216 Sum_probs=177.4
Q ss_pred CccccccCCCCEEeCCCCcCCC----CcCcccccCCCCCcEEEccCCccc---cCCCC-------CcCCCCCCcEEEecc
Q 045935 14 PRQIGELTQLPNLLLGNNLLSG----SLPVSLFTNLQSLSHLDVSNNSLY---GSFPP-------EIGNLKNLTHFFLGI 79 (587)
Q Consensus 14 ~~~~~~~~~L~~L~l~~~~~~~----~i~~~~~~~l~~L~~L~l~~~~~~---~~~~~-------~~~~l~~L~~L~l~~ 79 (587)
-+.+..+..++.++||||.+.. .+. ..+...++|+..++++-... ..+|. ++..+|+|++|+||.
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~-~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIA-KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHH-HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3556678889999999998852 233 56777889999999874322 22333 356789999999999
Q ss_pred cccccCCChh----hhcCCCccEEecCCCCCccCC-------------ccccccCCCCcEEEeccccCcccC----Cccc
Q 045935 80 NQFTGQLPPE----IGELSLLEIFSSPSCSITGPL-------------PEELSNYGSSGILNLGSTQLNGSI----PAEL 138 (587)
Q Consensus 80 ~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~-------------~~~l~~~~~L~~L~l~~~~~~~~~----~~~l 138 (587)
|.+....++. ++++..|++|.+.+|.+.-.. ....++-+.|+++...+|++.... ...|
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 9887555544 467899999999999875321 122445689999999999986432 3456
Q ss_pred cCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCC----CCCccccCCCcccEEecCCCc
Q 045935 139 GKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVG----RIPPEIGSCSMLKYISLSSNF 214 (587)
Q Consensus 139 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~ 214 (587)
...+.|+.+.++.|.|...... .+...+.++++|+.||+.+|.++. .+..++..+++|++|.+++|.
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~---------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVT---------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HhccccceEEEecccccCchhH---------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 7789999999999998622110 112346799999999999998863 234557788999999999999
Q ss_pred cccccCcccc-----CCCCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCc
Q 045935 215 VSGSIPRELC-----NSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFT 277 (587)
Q Consensus 215 ~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~ 277 (587)
+......+|. ..++|+.+.+.+|.++..... .+...+...+ +..|+++.|.+.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~----------~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL----------ALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHH----------HHHHHHhcchhhHHhcCCccccc
Confidence 8876665553 268999999999998743211 3334455566 999999999993
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=8.9e-13 Score=120.13 Aligned_cols=140 Identities=19% Similarity=0.232 Sum_probs=92.2
Q ss_pred CCCCCcEEEcCCCcCccc----cccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCcc--
Q 045935 422 RLGGLVKLNLTGNKLSGL----VPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG-- 495 (587)
Q Consensus 422 ~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-- 495 (587)
.-+.|+++....|++... +...+..++.|+.+.+..|.|...+. ......+..+. +|+.|||.+|.++.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~---~al~eal~~~~--~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV---TALAEALEHCP--HLEVLDLRDNTFTLEG 229 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh---HHHHHHHHhCC--cceeeecccchhhhHH
Confidence 346677777777766532 22345666777777777766653221 22333444444 77777777777753
Q ss_pred --CCchhccCCCCCcEEEccCcccccCCCccc-----CCCCCCceecCCCCcccc----cCChhhcCCCCCccccCCCCc
Q 045935 496 --GLPRSLSNLSYLTSVDLHRNKFTGEIPPEL-----GNLIQLEYLDVSKNMLCG----QIPKKICRLSNLLYLSFEENR 564 (587)
Q Consensus 496 --~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~ 564 (587)
.+...++.+++|++|++++|.+.+.....+ ...|.|+.|.+.+|.|+. .+..+....+.|+.|++++|.
T Consensus 230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 345567778889999999998875433332 346889999999998864 233445668889999999998
Q ss_pred ce
Q 045935 565 FA 566 (587)
Q Consensus 565 i~ 566 (587)
+.
T Consensus 310 l~ 311 (382)
T KOG1909|consen 310 LG 311 (382)
T ss_pred cc
Confidence 84
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2e-12 Score=121.11 Aligned_cols=214 Identities=23% Similarity=0.165 Sum_probs=139.6
Q ss_pred CCCCcccEEEccCccCCCCCC-CCCcCCCCCCeEecCCCcCCCC--CCcCccCCCCCcEEEccCcccccCCCcc-ccCCC
Q 045935 349 GNCTVVVYLLLSNNMLSSKIP-GSRSRLTNLTILDLSRNELAGS--IPPEFGDSLKLQGLFLGNNQLTDSIPGS-LGRLG 424 (587)
Q Consensus 349 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~-l~~~~ 424 (587)
.++.+|+.+.+.++++..... .....|++++.||+++|-+... .......+|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345667777777777653332 3445677888888888765531 1223456778888888888765322211 12467
Q ss_pred CCcEEEcCCCcCccc-cccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccC-Cchhcc
Q 045935 425 GLVKLNLTGNKLSGL-VPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGG-LPRSLS 502 (587)
Q Consensus 425 ~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~ 502 (587)
.|+.|.+++|.++.. +...+..+|+|+.|.+.+|.. ..........+..|++|||++|++.+. ......
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~---------~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI---------ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc---------cceecchhhhhhHHhhccccCCcccccccccccc
Confidence 788888888887732 222456688888888888731 111112222223789999999887632 225567
Q ss_pred CCCCCcEEEccCcccccC-CCcc-----cCCCCCCceecCCCCcccccC-ChhhcCCCCCccccCCCCcceecCcC
Q 045935 503 NLSYLTSVDLHRNKFTGE-IPPE-----LGNLIQLEYLDVSKNMLCGQI-PKKICRLSNLLYLSFEENRFAVLGIN 571 (587)
Q Consensus 503 ~~~~L~~L~L~~n~~~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~ 571 (587)
.+|.|..|+++.|.+... .|.+ ...+++|++|++..|+|.+.- -..+..+++|+.+.+..|++......
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~ 344 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDT 344 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccc
Confidence 889999999999988743 2222 345689999999999997421 24467788899999999988776554
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.2e-12 Score=119.83 Aligned_cols=211 Identities=21% Similarity=0.204 Sum_probs=122.8
Q ss_pred cccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCC--CCcCCCCCCcEEEecccccccCCChh-hhcCC
Q 045935 18 GELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFP--PEIGNLKNLTHFFLGINQFTGQLPPE-IGELS 94 (587)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~ 94 (587)
.+++.|+.+.|.++.+......+....|++++.||||.|-+....+ .....+|+|+.|+++.|.+..-.... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3667788888888877632222466778888888888876652211 22457888888888887664211111 12567
Q ss_pred CccEEecCCCCCccC-CccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCc
Q 045935 95 LLEIFSSPSCSITGP-LPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPS 173 (587)
Q Consensus 95 ~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~ 173 (587)
+|+.|.+++|.++.. +......+|+|+.|++..|...........-+..|++|||++|.+-.. ..-.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~------------~~~~ 265 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF------------DQGY 265 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc------------cccc
Confidence 777777888877643 223345677778887777742212222233456777777777775311 0012
Q ss_pred ccccCCCCCEEeCCCCccCCCC-Ccc-----ccCCCcccEEecCCCcccc-ccCccccCCCCCcEEEcCCcccc
Q 045935 174 WFGKWNQLDSLLLSSNQFVGRI-PPE-----IGSCSMLKYISLSSNFVSG-SIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 174 ~~~~~~~L~~L~l~~~~~~~~~-~~~-----l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
..+.++.|..|+++.+++.+.- |+. ...+++|++|++..|.+.+ .....+..+++|+.|.+..+.+.
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 2446677777777777776422 221 2346777777777777641 11223344556666666555544
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1.2e-11 Score=110.32 Aligned_cols=130 Identities=25% Similarity=0.275 Sum_probs=62.7
Q ss_pred CCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccC
Q 045935 424 GGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSN 503 (587)
Q Consensus 424 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 503 (587)
..|+++|+++|.+. .+.+++.-.|.++.|++++|.|...++ +.... +|+.||||+|.++ .+..+=..
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n---------La~L~--~L~~LDLS~N~Ls-~~~Gwh~K 350 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN---------LAELP--QLQLLDLSGNLLA-ECVGWHLK 350 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh---------hhhcc--cceEeecccchhH-hhhhhHhh
Confidence 34555555555554 334444445555555555554432111 11111 5555555555554 33333334
Q ss_pred CCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCC-hhhcCCCCCccccCCCCcceec
Q 045935 504 LSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIP-KKICRLSNLLYLSFEENRFAVL 568 (587)
Q Consensus 504 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~ 568 (587)
+-+++.|.+++|.+.+. .+++.+-+|..||+++|+|..... ..++++|.|+.+.+.+||+..+
T Consensus 351 LGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 44555555555555422 344555555555555555543221 3345555555555555555544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=7.8e-11 Score=101.00 Aligned_cols=128 Identities=22% Similarity=0.198 Sum_probs=42.3
Q ss_pred ccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhh-hcCCC
Q 045935 17 IGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEI-GELSL 95 (587)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~ 95 (587)
+.+...+++|+|+++.|. .|. ..-..+.+|+.|++++|.+... +.+..+++|++|++++|.++. +.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 344456788888888887 565 3323577888888888888632 357778888888888888873 43444 36788
Q ss_pred ccEEecCCCCCccC-CccccccCCCCcEEEeccccCcccCC---ccccCCCCCceeec
Q 045935 96 LEIFSSPSCSITGP-LPEELSNYGSSGILNLGSTQLNGSIP---AELGKCENLKSVLL 149 (587)
Q Consensus 96 L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~L 149 (587)
|++|++++|++.+. ....+..+++|++|++.+|++....- -.+..+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88888888877643 22445666777777777776653211 12344555555554
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=1.1e-12 Score=126.77 Aligned_cols=181 Identities=31% Similarity=0.440 Sum_probs=145.9
Q ss_pred CCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCcee
Q 045935 374 RLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHL 453 (587)
Q Consensus 374 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 453 (587)
.+..-...|++.|.+. .+|..+..+..|+.+.+..|.+. .++..+.++..|++++++.|++. ..|..+..|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3444556788888887 77888888888888888888887 67778888889999999998887 5566666665 8888
Q ss_pred eccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCce
Q 045935 454 DLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEY 533 (587)
Q Consensus 454 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 533 (587)
.+++|++.. ++..+.... .|..||.+.|.+. .+|..+.++.+|+.|.++.|++. ..|+.+.. -.|.+
T Consensus 149 i~sNNkl~~--------lp~~ig~~~--tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~ 215 (722)
T KOG0532|consen 149 IVSNNKLTS--------LPEEIGLLP--TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIR 215 (722)
T ss_pred EEecCcccc--------CCcccccch--hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceee
Confidence 888877652 333333222 8888999999987 78999999999999999999998 56777774 46999
Q ss_pred ecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCc
Q 045935 534 LDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINR 572 (587)
Q Consensus 534 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 572 (587)
||+++|.+. .+|.+|..|..|++|-|++||+...+.+.
T Consensus 216 lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 216 LDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred eecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 999999998 89999999999999999999998877663
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=4.3e-12 Score=122.77 Aligned_cols=169 Identities=25% Similarity=0.384 Sum_probs=84.2
Q ss_pred EEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEecccc
Q 045935 50 HLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQ 129 (587)
Q Consensus 50 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 129 (587)
..|++.|++. ++|..++.|..|+.+.+..|.+- .+|..++++..|.+++++.|+++ ..|..+..+ -|+.|-+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCc
Confidence 4445555554 55555555555555555555444 44555555555555555555544 233333333 24555555555
Q ss_pred CcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEe
Q 045935 130 LNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYIS 209 (587)
Q Consensus 130 ~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 209 (587)
++ .+|..++..+.|..||.+.|.+. .+|+.++.+.+|+.|.+.+|++. .+|+.+. .-.|..||
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~--------------slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lD 217 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ--------------SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLD 217 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh--------------hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeee
Confidence 54 44444444555555555555543 33444444555555555555544 3333344 33345555
Q ss_pred cCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 210 LSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
++.|++. .+|..|.+++.|++|-|++|++.
T Consensus 218 fScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 218 FSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 5555555 45555555555555555555543
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=1.7e-10 Score=116.30 Aligned_cols=193 Identities=32% Similarity=0.435 Sum_probs=129.2
Q ss_pred EEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCC-CCcEEEecccccccCCChhhhcCCCccEEecCC
Q 045935 25 NLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLK-NLTHFFLGINQFTGQLPPEIGELSLLEIFSSPS 103 (587)
Q Consensus 25 ~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (587)
.+++..+.+...+. .+..++.++.|++.++.+. .++......+ +|+.|++++|.+. .++..+..+++|+.|+++.
T Consensus 97 ~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNIS--ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCch--hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 46666666631222 3455577888888888777 5555566663 7888888888777 5556677888888888888
Q ss_pred CCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCE
Q 045935 104 CSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDS 183 (587)
Q Consensus 104 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~ 183 (587)
|+++. ++......++|+.|++++|.+. .++........|+++.+++|.+. ..+..+.++.++..
T Consensus 173 N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~--------------~~~~~~~~~~~l~~ 236 (394)
T COG4886 173 NDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII--------------ELLSSLSNLKNLSG 236 (394)
T ss_pred chhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce--------------ecchhhhhcccccc
Confidence 88774 3334446778888888888877 55554445556888888887422 22334556667777
Q ss_pred EeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 184 LLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 184 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
+.+..+++. ..+..++.++.++.|++++|.++.... +....+++.|+++++.+.
T Consensus 237 l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 237 LELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 777777765 235567777778888888887774333 666777888888877765
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=2.5e-10 Score=97.93 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=29.7
Q ss_pred cCCCCCcEEEccCCccccCCCCCcC-CCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCcccc-ccCCCC
Q 045935 43 TNLQSLSHLDVSNNSLYGSFPPEIG-NLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEEL-SNYGSS 120 (587)
Q Consensus 43 ~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L 120 (587)
.+..+++.|+|.+|.+... +.+. .+.+|++|++++|.++.. +.+..++.|+.|++++|.++... ..+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence 4455667777777776522 2343 456777777777766632 34666666666666666666432 223 346666
Q ss_pred cEEEeccccCccc-CCccccCCCCCceeecccccCC
Q 045935 121 GILNLGSTQLNGS-IPAELGKCENLKSVLLSFNALP 155 (587)
Q Consensus 121 ~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~~~ 155 (587)
++|++++|++... ....++.+++|+.|++.+|.+.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666666666431 2234455566666666665543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.2e-10 Score=103.96 Aligned_cols=129 Identities=22% Similarity=0.213 Sum_probs=97.4
Q ss_pred CCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCc
Q 045935 94 SLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPS 173 (587)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~ 173 (587)
..|+++++++|.|+ .+..++.-.|.++.|+++.|++... +.++.+++|+.||+++|.++ .+..
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls--------------~~~G 346 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA--------------ECVG 346 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH--------------hhhh
Confidence 46788888888887 4556677778888999998887633 33778889999999998865 3334
Q ss_pred ccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccc-cCccccCCCCCcEEEcCCccccc
Q 045935 174 WFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGS-IPRELCNSESLVEINLDGNLLSG 241 (587)
Q Consensus 174 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 241 (587)
|-.++-++++|.+++|.+.+ ...+..+-+|.+||+++|+|... -...++++|.|+.+.+.+|++..
T Consensus 347 wh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 44566788899999988862 23466677889999999988632 34567889999999999998874
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=1.4e-09 Score=109.54 Aligned_cols=198 Identities=31% Similarity=0.413 Sum_probs=145.2
Q ss_pred EEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCC-CccEEecCCCCCccCCccccccCCCCcEEEeccc
Q 045935 50 HLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELS-LLEIFSSPSCSITGPLPEELSNYGSSGILNLGST 128 (587)
Q Consensus 50 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 128 (587)
.++++.+.+. .....+..++.++.|.+.++.++ .++....... +|+.|+++++++.. ++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 5777777764 23334555678899999988888 6666666674 89999999988873 4457888899999999999
Q ss_pred cCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEE
Q 045935 129 QLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYI 208 (587)
Q Consensus 129 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 208 (587)
+++ ..+...+..+.|+.|++++|.+. .+|........|+++.+++|... ..+..+..+.++..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~--------------~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l 237 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS--------------DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGL 237 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc--------------cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccccc
Confidence 888 44544557788999999999876 33333345556888999888543 355567788888888
Q ss_pred ecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCccccchh
Q 045935 209 SLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLS 283 (587)
Q Consensus 209 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~ 283 (587)
.+.+|++. ..+..+..+++++.|++++|.++ .++. +.... ++.++++++.+....+..
T Consensus 238 ~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~---------------~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQIS---------------SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccCCceee-eccchhccccccceecccccccc---------------cccc-ccccCccCEEeccCccccccchhh
Confidence 88888777 44667777888999999888877 4444 66666 889999888887655443
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=6.6e-10 Score=78.17 Aligned_cols=61 Identities=39% Similarity=0.532 Sum_probs=38.7
Q ss_pred CCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcc
Q 045935 505 SYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRF 565 (587)
Q Consensus 505 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 565 (587)
|+|++|++++|+++...+..|.++++|++|++++|.++...+.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666655555666666666666666666655556666666666666666654
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.4e-09 Score=117.01 Aligned_cols=204 Identities=22% Similarity=0.201 Sum_probs=120.6
Q ss_pred ccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCc--cccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCc
Q 045935 19 ELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNS--LYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLL 96 (587)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 96 (587)
+....|+..+-++.+. .++ .. ..+++|++|-+.++. +....++.|..+|.|++|++++|.-.+.+|+.++++-+|
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~-~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIA-GS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchh-hcc-CC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 3455677777777665 444 22 345678777777775 443334446778888888888776556778888888888
Q ss_pred cEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccc
Q 045935 97 EIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFG 176 (587)
Q Consensus 97 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~ 176 (587)
|+|+++++.+. .+|..+.++..|.+|++..+.-....+.....+.+|++|.+...... ..+..-..+.
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-----------~~~~~l~el~ 665 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-----------NDKLLLKELE 665 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc-----------cchhhHHhhh
Confidence 88888888777 67778888888888888776654444566666788888887665421 0011112223
Q ss_pred cCCCCCEEeCCCCccCCCCCccccCCCccc----EEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 177 KWNQLDSLLLSSNQFVGRIPPEIGSCSMLK----YISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
.+.+|+.+....... .....+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus 666 ~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 666 NLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 444555444432221 0111223333333 2222222222 34455566777777777776654
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.88 E-value=4.2e-09 Score=111.07 Aligned_cols=109 Identities=28% Similarity=0.481 Sum_probs=96.7
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
.++.|+|+++.+.+.+| ..+..+++|++|+|++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 47889999999998888 67889999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCccCCccccccC-CCCcEEEeccccCc
Q 045935 102 PSCSITGPLPEELSNY-GSSGILNLGSTQLN 131 (587)
Q Consensus 102 ~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 131 (587)
++|.+++.+|..+... .++..+++.+|...
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccc
Confidence 9999999999888763 46778888888643
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.5e-09 Score=75.21 Aligned_cols=61 Identities=43% Similarity=0.555 Sum_probs=55.8
Q ss_pred ccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcc
Q 045935 481 WNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNML 541 (587)
Q Consensus 481 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 541 (587)
|+|++|++++|.++...+..|.++++|++|++++|+++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3789999999999977778999999999999999999988888999999999999999975
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=1.3e-08 Score=107.51 Aligned_cols=109 Identities=32% Similarity=0.496 Sum_probs=100.5
Q ss_pred CCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEec
Q 045935 47 SLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLG 126 (587)
Q Consensus 47 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 126 (587)
.++.|+|+++.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCccccCC-CCCceeecccccCC
Q 045935 127 STQLNGSIPAELGKC-ENLKSVLLSFNALP 155 (587)
Q Consensus 127 ~~~~~~~~~~~l~~l-~~L~~L~L~~n~~~ 155 (587)
+|.+++..|..+... .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999999999888753 46788999988743
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6.7e-11 Score=105.52 Aligned_cols=178 Identities=23% Similarity=0.243 Sum_probs=88.7
Q ss_pred CCCeEecCCCcCCCC-CCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCc-Cccccc-cccccCCCCcee
Q 045935 377 NLTILDLSRNELAGS-IPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNK-LSGLVP-TSLENLKGLTHL 453 (587)
Q Consensus 377 ~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~-l~~~~~-~~l~~~~~L~~L 453 (587)
+++++|+++..|+.. ...-++.|.+|+.|.+.++++.+.+...++.-.+|+.++++.|. ++.... -.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555421 11223455666666666666655555555555666666666654 322211 134556666666
Q ss_pred eccCCccccccccccccchhhhhhcccccccEEecccccC--cc-CCchhccCCCCCcEEEccCcc-cccCCCcccCCCC
Q 045935 454 DLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFF--DG-GLPRSLSNLSYLTSVDLHRNK-FTGEIPPELGNLI 529 (587)
Q Consensus 454 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l--~~-~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~ 529 (587)
+++.|.+.. ...... .....+.|+.|+|+|+.- .. .+..-...||+|.+|||++|. ++......|..++
T Consensus 266 NlsWc~l~~------~~Vtv~-V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 266 NLSWCFLFT------EKVTVA-VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred CchHhhccc------hhhhHH-HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 666654321 111111 111112566666666531 11 122223456666666666663 3322223444566
Q ss_pred CCceecCCCCcccccCChh---hcCCCCCccccCCCC
Q 045935 530 QLEYLDVSKNMLCGQIPKK---ICRLSNLLYLSFEEN 563 (587)
Q Consensus 530 ~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n 563 (587)
.|++|.++.|+.. +|+. |...|.|.+|++.|+
T Consensus 339 ~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 6666666666542 3333 345666666666665
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=6.6e-09 Score=111.96 Aligned_cols=107 Identities=22% Similarity=0.265 Sum_probs=72.3
Q ss_pred cCCCCCEEeCCCCc--cCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccc
Q 045935 177 KWNQLDSLLLSSNQ--FVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIH 254 (587)
Q Consensus 177 ~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~ 254 (587)
.+++|+.|-+.++. +.....+.|..+|.|+.||+++|.--...|..++.+-+|+.|+++++.+.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-------------- 608 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-------------- 608 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--------------
Confidence 34467777777765 44334444667888888888877555577888888888888888887776
Q ss_pred cccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceeccccc
Q 045935 255 GSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASN 299 (587)
Q Consensus 255 ~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 299 (587)
.+|..+..++ |.+|++..+.....++... ..+++|+++.+...
T Consensus 609 -~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~-~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 609 -HLPSGLGNLKKLIYLNLEVTGRLESIPGIL-LELQSLRVLRLPRS 652 (889)
T ss_pred -ccchHHHHHHhhheeccccccccccccchh-hhcccccEEEeecc
Confidence 6777777777 7777777765543443333 33777777777654
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.6e-10 Score=101.82 Aligned_cols=207 Identities=24% Similarity=0.189 Sum_probs=126.0
Q ss_pred cccEEEccCccCCCC-CCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcc-cccCC-CccccCCCCCcEE
Q 045935 353 VVVYLLLSNNMLSSK-IPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQ-LTDSI-PGSLGRLGGLVKL 429 (587)
Q Consensus 353 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~-~~~~~-~~~l~~~~~L~~L 429 (587)
.++.++++...++.. ....+..|.+|+.|.+.+..+.+.+...+++...|+.++++.|. +++.. .-.+..|..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466667766555421 12234566777777777777776666677777777777777763 33221 1235678888888
Q ss_pred EcCCCcCccccccc-ccc-CCCCceeeccCCccccccccccccchhhhhhcccccccEEecccc-cCccCCchhccCCCC
Q 045935 430 NLTGNKLSGLVPTS-LEN-LKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNN-FFDGGLPRSLSNLSY 506 (587)
Q Consensus 430 ~L~~~~l~~~~~~~-l~~-~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~ 506 (587)
+++.|.+......+ +.. -++|+.|+++|+.-..... .+.-....+. +|..|||++| .++......|..++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s----h~~tL~~rcp--~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS----HLSTLVRRCP--NLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh----HHHHHHHhCC--ceeeeccccccccCchHHHHHHhcch
Confidence 88888765433222 222 3678888888876433222 2222333333 8888888887 455455566788899
Q ss_pred CcEEEccCccc-ccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcc
Q 045935 507 LTSVDLHRNKF-TGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRF 565 (587)
Q Consensus 507 L~~L~L~~n~~-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 565 (587)
|++|.++.|.. -....-.+...|+|.+||+-+|-=.+...-....+++|+.=.--.|.+
T Consensus 340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q~~~~i 399 (419)
T KOG2120|consen 340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQHFNFI 399 (419)
T ss_pred heeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccccceeeeee
Confidence 99999999954 222333456778999999988833222222234566666544444433
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=3.4e-09 Score=106.86 Aligned_cols=128 Identities=24% Similarity=0.297 Sum_probs=70.3
Q ss_pred ccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccE
Q 045935 19 ELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEI 98 (587)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 98 (587)
.+..++.+++..+.+. .+. ..+..+++|+.|++.+|.+. .+...+..+++|++|++++|.++.. ..+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhh-hhh-cccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 3455555555555554 222 33455666666666666665 2222255566666666666666533 44555555666
Q ss_pred EecCCCCCccCCccccccCCCCcEEEeccccCcccCC-ccccCCCCCceeecccccC
Q 045935 99 FSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIP-AELGKCENLKSVLLSFNAL 154 (587)
Q Consensus 99 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~ 154 (587)
|++.+|.++.. ..+..++.|+.+++++|++..... . ...+.+++.+.+.+|.+
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 66666666533 344445666666666666553322 1 34555666666666554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.61 E-value=1.7e-09 Score=108.09 Aligned_cols=110 Identities=32% Similarity=0.294 Sum_probs=65.0
Q ss_pred CCCcCCCCcccEEEccCccCCCCCCCCCcCC-CCCCeEecCCCcCC----------CCCCcCccCCCCCcEEEccCcccc
Q 045935 345 PEDLGNCTVVVYLLLSNNMLSSKIPGSRSRL-TNLTILDLSRNELA----------GSIPPEFGDSLKLQGLFLGNNQLT 413 (587)
Q Consensus 345 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~----------~~~~~~~~~~~~L~~L~L~~~~~~ 413 (587)
|..+..+.+|+.|.+.+|.+... ..+..+ ..|++|...+ .+. +.+..++.. ..|.+.+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~W-n~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVW-NKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhh-hhHhhhhcchhhHH
Confidence 44556667788888888877631 111111 1233332222 111 011111111 25667777777776
Q ss_pred cCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccc
Q 045935 414 DSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461 (587)
Q Consensus 414 ~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~ 461 (587)
.+...+.-++.++.|+|++|++... ..+..|++|++|||++|.+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence 4556666778888888888888754 37788888888888887764
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=1.2e-08 Score=103.01 Aligned_cols=210 Identities=27% Similarity=0.286 Sum_probs=133.4
Q ss_pred EccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccc
Q 045935 334 DLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLT 413 (587)
Q Consensus 334 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 413 (587)
.+..+.+.. ....+..+.++..+++.+|.+..+.. .+..+++|++|++++|.|+... .+..++.|+.|++++|.+.
T Consensus 78 ~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 78 NLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred ccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcch
Confidence 567777663 23345667788888888888764422 2566788888888888887442 3455666888888888876
Q ss_pred cCCCccccCCCCCcEEEcCCCcCccccc-cccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEeccccc
Q 045935 414 DSIPGSLGRLGGLVKLNLTGNKLSGLVP-TSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNF 492 (587)
Q Consensus 414 ~~~~~~l~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 492 (587)
.+ ..+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+.... .+.... .+..+++.+|.
T Consensus 154 ~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~---------~~~~~~--~l~~~~l~~n~ 219 (414)
T KOG0531|consen 154 DI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE---------GLDLLK--KLVLLSLLDNK 219 (414)
T ss_pred hc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc---------chHHHH--HHHHhhccccc
Confidence 32 234457788888888888764433 2 466778888888887664211 011111 34444667776
Q ss_pred CccCCchhccCCC--CCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcce
Q 045935 493 FDGGLPRSLSNLS--YLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFA 566 (587)
Q Consensus 493 l~~~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 566 (587)
+...-+ +..+. +|+.+++++|++. ..+..+..+..++.+++..|.+... ..+...+.+..+....|++.
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 652211 22222 3778888888887 4445667777888888888877632 33455666777777777665
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=1e-09 Score=102.78 Aligned_cols=86 Identities=22% Similarity=0.099 Sum_probs=43.3
Q ss_pred CCCCCCeEecCCCc-CCCCCCcCc-cCCCCCcEEEccCccc-ccCCCccc-cCCCCCcEEEcCCCcCccc--cccccccC
Q 045935 374 RLTNLTILDLSRNE-LAGSIPPEF-GDSLKLQGLFLGNNQL-TDSIPGSL-GRLGGLVKLNLTGNKLSGL--VPTSLENL 447 (587)
Q Consensus 374 ~~~~L~~L~l~~~~-i~~~~~~~~-~~~~~L~~L~L~~~~~-~~~~~~~l-~~~~~L~~L~L~~~~l~~~--~~~~l~~~ 447 (587)
.+..|+.++.+++. +++....++ .++++|+.+.++.|+. +......+ .+++.|+.+++.+|..... +...-.+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45566777666654 222222222 3456677777766642 22222222 2456666666666654322 12223456
Q ss_pred CCCceeeccCCc
Q 045935 448 KGLTHLDLSYNK 459 (587)
Q Consensus 448 ~~L~~L~l~~~~ 459 (587)
+.|+++.+++|.
T Consensus 372 ~~lr~lslshce 383 (483)
T KOG4341|consen 372 PRLRVLSLSHCE 383 (483)
T ss_pred chhccCChhhhh
Confidence 666666666654
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.47 E-value=2.9e-08 Score=87.79 Aligned_cols=214 Identities=18% Similarity=0.190 Sum_probs=126.6
Q ss_pred cccCCCCEEeCCCCcCCC----CcCcccccCCCCCcEEEccCCccc---cCC-------CCCcCCCCCCcEEEecccccc
Q 045935 18 GELTQLPNLLLGNNLLSG----SLPVSLFTNLQSLSHLDVSNNSLY---GSF-------PPEIGNLKNLTHFFLGINQFT 83 (587)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~----~i~~~~~~~l~~L~~L~l~~~~~~---~~~-------~~~~~~l~~L~~L~l~~~~~~ 83 (587)
..+..++.++||||.|.. ++. ..+++-++|+..++++-... ..+ ..++-.||+|+.+++|.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~-~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELC-NVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHH-HHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345667777777777742 233 44555677777777754222 111 123456777777777777766
Q ss_pred cCCChh----hhcCCCccEEecCCCCCccC----Cc---------cccccCCCCcEEEeccccCcccCC----ccccCCC
Q 045935 84 GQLPPE----IGELSLLEIFSSPSCSITGP----LP---------EELSNYGSSGILNLGSTQLNGSIP----AELGKCE 142 (587)
Q Consensus 84 ~~~~~~----~~~l~~L~~L~l~~~~~~~~----~~---------~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~l~ 142 (587)
...|+. +++-+.|.+|.+++|.+.-. +. .-..+-|.|+++....|++..... ..+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 555533 45567777777777765321 11 112334677777777777652211 1223335
Q ss_pred CCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCC----CCccccCCCcccEEecCCCccccc
Q 045935 143 NLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGR----IPPEIGSCSMLKYISLSSNFVSGS 218 (587)
Q Consensus 143 ~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~ 218 (587)
+|+.+.+..|.|. |+++..+.+ ..+..+++|+.||+.+|.++.. +..++..++.|++|.+..|-++..
T Consensus 186 ~lk~vki~qNgIr---pegv~~L~~-----~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 186 NLKEVKIQQNGIR---PEGVTMLAF-----LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred CceeEEeeecCcC---cchhHHHHH-----HHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 7778888887766 222222211 1134677888888888877632 223455677788888888877655
Q ss_pred cCcccc------CCCCCcEEEcCCcccc
Q 045935 219 IPRELC------NSESLVEINLDGNLLS 240 (587)
Q Consensus 219 ~~~~~~------~~~~L~~L~l~~~~~~ 240 (587)
...++. ..++|+.|...+|...
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhc
Confidence 444432 2577888888887754
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=4.3e-08 Score=87.90 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=32.4
Q ss_pred cccEEecccccCcc-CCchhccCCCCCcEEEccCccccc-CCCcccCCCCCCceecCCCCcccc
Q 045935 482 NIATLNLSNNFFDG-GLPRSLSNLSYLTSVDLHRNKFTG-EIPPELGNLIQLEYLDVSKNMLCG 543 (587)
Q Consensus 482 ~L~~L~L~~~~l~~-~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~ 543 (587)
++..+.+.+|++.. .....+..+|.+.-|.|+.+++.. .....+.++++|.-|.++++++.+
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 55555666665542 122334445555566666666542 122344555666666666666543
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=5.2e-08 Score=86.23 Aligned_cols=187 Identities=18% Similarity=0.164 Sum_probs=102.6
Q ss_pred CCCCcEEEccCCccccCCCCC----cCCCCCCcEEEecccc---cccCC-------ChhhhcCCCccEEecCCCCCccCC
Q 045935 45 LQSLSHLDVSNNSLYGSFPPE----IGNLKNLTHFFLGINQ---FTGQL-------PPEIGELSLLEIFSSPSCSITGPL 110 (587)
Q Consensus 45 l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~---~~~~~-------~~~~~~l~~L~~L~l~~~~~~~~~ 110 (587)
+..+..++||+|.+....... +.+-++|+..+++.-. ..+.+ ..++.+|++|+.++++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 566777777777776443332 3445667777766431 11122 234557777777777777665443
Q ss_pred c----cccccCCCCcEEEeccccCcccCCccc-------------cCCCCCceeecccccCCCCCCcccCCccccCCCCc
Q 045935 111 P----EELSNYGSSGILNLGSTQLNGSIPAEL-------------GKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPS 173 (587)
Q Consensus 111 ~----~~l~~~~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~ 173 (587)
| +.+++.+.|.+|.+++|++.-.....+ ++-|.|+.+....|++.......++ .
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a---------~ 179 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA---------A 179 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH---------H
Confidence 3 334566777777777777653222212 2356777777777776421111110 0
Q ss_pred ccccCCCCCEEeCCCCccCCCC-----CccccCCCcccEEecCCCccccccC----ccccCCCCCcEEEcCCcccc
Q 045935 174 WFGKWNQLDSLLLSSNQFVGRI-----PPEIGSCSMLKYISLSSNFVSGSIP----RELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 174 ~~~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~ 240 (587)
.+..=..|+.+.+..|.|.... ...+..+++|+.|++..|-++.... .+++.-+.|++|++.+|-++
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 1111146777777777664221 1123456777777777777663322 22333345677777777654
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.33 E-value=5.9e-09 Score=97.77 Aligned_cols=134 Identities=25% Similarity=0.185 Sum_probs=55.9
Q ss_pred CCCCcEEEccCccc-ccCCCccc-cCCCCCcEEEcCCCc-Ccccccccc-ccCCCCceeeccCCccccccccccccchhh
Q 045935 399 SLKLQGLFLGNNQL-TDSIPGSL-GRLGGLVKLNLTGNK-LSGLVPTSL-ENLKGLTHLDLSYNKLDVQHNKLSGPLNEL 474 (587)
Q Consensus 399 ~~~L~~L~L~~~~~-~~~~~~~l-~~~~~L~~L~L~~~~-l~~~~~~~l-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 474 (587)
+..|+.+..+++.- ++.....+ .++++|+.+.+.+|+ ++...-..+ .+++.|+.+++.+|... ..+.+.+.
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~-----~d~tL~sl 367 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI-----TDGTLASL 367 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee-----hhhhHhhh
Confidence 45556666655532 21111222 245666666666665 222211122 33556666666554321 11112222
Q ss_pred hhhcccccccEEecccccC-ccCC----chhccCCCCCcEEEccCcccc-cCCCcccCCCCCCceecCCCC
Q 045935 475 FTNSVAWNIATLNLSNNFF-DGGL----PRSLSNLSYLTSVDLHRNKFT-GEIPPELGNLIQLEYLDVSKN 539 (587)
Q Consensus 475 ~~~~~~~~L~~L~L~~~~l-~~~~----~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n 539 (587)
..++. .|+.+.++.|.. +++. ...-.+...|..+.+++|+.. +...+-+..|+.|+++++-+|
T Consensus 368 s~~C~--~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 368 SRNCP--RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccCCc--hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 22222 555555554432 2110 111123344555555555332 223344444555555555555
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=2.9e-07 Score=92.56 Aligned_cols=165 Identities=26% Similarity=0.254 Sum_probs=101.9
Q ss_pred CcCccCCCCCcEEEccCcccccCCCcc----------------------c-------c---CCCCCcEEEcCCCcCcccc
Q 045935 393 PPEFGDSLKLQGLFLGNNQLTDSIPGS----------------------L-------G---RLGGLVKLNLTGNKLSGLV 440 (587)
Q Consensus 393 ~~~~~~~~~L~~L~L~~~~~~~~~~~~----------------------l-------~---~~~~L~~L~L~~~~l~~~~ 440 (587)
|-.+..+.+|++|.+.+|.+.. ..+. | . ..-.|...+.+.|.+. .+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hH
Confidence 5567778899999999998742 1100 0 0 0123556666666665 44
Q ss_pred ccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccC
Q 045935 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGE 520 (587)
Q Consensus 441 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~ 520 (587)
..++.-++.++.|+|++|++.. . ..+..+. .|+.|||+.|.+.-...-.-..|+ |..|.+++|.+++.
T Consensus 180 D~SLqll~ale~LnLshNk~~~-------v--~~Lr~l~--~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTK-------V--DNLRRLP--KLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL 247 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhh-------h--HHHHhcc--cccccccccchhccccccchhhhh-heeeeecccHHHhh
Confidence 5566667777777777765431 1 1222333 777777777777622222223444 77777777777643
Q ss_pred CCcccCCCCCCceecCCCCccccc-CChhhcCCCCCccccCCCCcceecCcCch
Q 045935 521 IPPELGNLIQLEYLDVSKNMLCGQ-IPKKICRLSNLLYLSFEENRFAVLGINRL 573 (587)
Q Consensus 521 ~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~ 573 (587)
.++.++.+|+.||+++|-+.+- ....++.+..|++|.+.|||+.+-+-.+-
T Consensus 248 --~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRa 299 (1096)
T KOG1859|consen 248 --RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRA 299 (1096)
T ss_pred --hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHH
Confidence 5667777888888888866541 12336677778888888888776655443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=1.2e-07 Score=74.98 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=38.5
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
+|+..+|++|.++ ++|+.+-..++-++.++++.|.+. .+|..+..++.|+.|+++.|++. ..|+.+..+.++-.|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3444455555555 455444444445555555555554 44444555555555555555444 33444444444444444
Q ss_pred CCC
Q 045935 102 PSC 104 (587)
Q Consensus 102 ~~~ 104 (587)
.++
T Consensus 131 ~~n 133 (177)
T KOG4579|consen 131 PEN 133 (177)
T ss_pred CCC
Confidence 443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=1.4e-07 Score=74.60 Aligned_cols=87 Identities=26% Similarity=0.435 Sum_probs=43.1
Q ss_pred cccEEecccccCccCCchhcc-CCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccC
Q 045935 482 NIATLNLSNNFFDGGLPRSLS-NLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSF 560 (587)
Q Consensus 482 ~L~~L~L~~~~l~~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 560 (587)
.|+..+|++|.+. ..|..|. .++..+.+++++|+++ .+|+.+..++.|+.|+++.|++. ..|+.+..+.++-.|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 4444555555554 3333332 2335555555555555 44444555555555555555554 44444444555555555
Q ss_pred CCCcceecCcC
Q 045935 561 EENRFAVLGIN 571 (587)
Q Consensus 561 ~~n~i~~~~~~ 571 (587)
-+|.+..++.+
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 55555555444
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=1.3e-06 Score=78.59 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=50.1
Q ss_pred CCcccEEEccCccCCCCC-CCCCcCCCCCCeEecCCCcCCC-CCCcCccCCCCCcEEEccCcccccCCCc------cccC
Q 045935 351 CTVVVYLLLSNNMLSSKI-PGSRSRLTNLTILDLSRNELAG-SIPPEFGDSLKLQGLFLGNNQLTDSIPG------SLGR 422 (587)
Q Consensus 351 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~------~l~~ 422 (587)
+|++..+-+.+|++.+.. ...+..++.+..|+++.++|.. ...+++..++.|..|.++++++.+.... .++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 356667777777765432 3455666777778888887763 2234566778888888888776543221 1344
Q ss_pred CCCCcEEEcC
Q 045935 423 LGGLVKLNLT 432 (587)
Q Consensus 423 ~~~L~~L~L~ 432 (587)
+++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 5555555443
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.09 E-value=9e-06 Score=67.48 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=59.0
Q ss_pred CccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcC
Q 045935 14 PRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGEL 93 (587)
Q Consensus 14 ~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 93 (587)
..+|.++++|+.+++.. .+. .++..+|.++++|+.+.+..+ +......+|.++++++.+.+.. .+.......+..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 45677777888887764 455 677777777877888887764 5444555677777777777765 3322233456667
Q ss_pred CCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCC
Q 045935 94 SLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENL 144 (587)
Q Consensus 94 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 144 (587)
++|+.+.+..+ +......++.++ +++.+.+.. .+.......|.+|++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77777777543 433334455555 666666654 3333444555555554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.9e-05 Score=76.56 Aligned_cols=137 Identities=19% Similarity=0.254 Sum_probs=70.1
Q ss_pred CCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCc-ccccCCCccccCCCCCc
Q 045935 349 GNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNN-QLTDSIPGSLGRLGGLV 427 (587)
Q Consensus 349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~L~ 427 (587)
..+..++.|++++|.+... | .+ .++|++|.+++|.--...|..+ .++|+.|.+++| .+. .. .+.|+
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL------P~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL------PESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc------ccccc
Confidence 3456677888888766533 3 11 2467888887764323444433 356777777777 332 12 23566
Q ss_pred EEEcCCCcCccccccccccC-CCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCC
Q 045935 428 KLNLTGNKLSGLVPTSLENL-KGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSY 506 (587)
Q Consensus 428 ~L~L~~~~l~~~~~~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 506 (587)
.|++..+.... +..+ ++|+.|.+.++.-. .........|++|+.|++++|... .+|..+. .+
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~---------~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~S 178 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPE---------NQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ES 178 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheeccccccc---------cccccccccCCcccEEEecCCCcc-cCccccc--cc
Confidence 67766544321 1111 35556655432100 000000112336777777776654 3343333 46
Q ss_pred CcEEEccCc
Q 045935 507 LTSVDLHRN 515 (587)
Q Consensus 507 L~~L~L~~n 515 (587)
|+.|+++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 777776655
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=2.5e-06 Score=54.57 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=17.7
Q ss_pred CCceecCCCCcccccCChhhcCCCCCccccCCCCccee
Q 045935 530 QLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAV 567 (587)
Q Consensus 530 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 567 (587)
+|++|++++|+|+ .+|..+.+|++|++|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555 233345555555555555555553
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=7.6e-06 Score=52.35 Aligned_cols=36 Identities=44% Similarity=0.719 Sum_probs=16.1
Q ss_pred CCcEEEccCcccccCCCcccCCCCCCceecCCCCccc
Q 045935 506 YLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLC 542 (587)
Q Consensus 506 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 542 (587)
+|++|++++|+++ .++..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555444 33333444555555555555444
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.87 E-value=2e-05 Score=65.34 Aligned_cols=124 Identities=13% Similarity=0.171 Sum_probs=55.0
Q ss_pred ccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCC
Q 045935 418 GSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGL 497 (587)
Q Consensus 418 ~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 497 (587)
.+|.++.+|+.+.+.. .+......+|..+++|+.+.+.+ + +....
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~---------------------------------~-~~~i~ 50 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN---------------------------------N-LTSIG 50 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS---------------------------------T-TSCE-
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc---------------------------------c-ccccc
Confidence 3455566666666654 33334445566666666665554 2 22233
Q ss_pred chhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhhH
Q 045935 498 PRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVK 577 (587)
Q Consensus 498 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 577 (587)
...|.++++++.+.+.+ .+.......|..++.|+.+++..+ +.......|.++ +|+.+.+.. .+..++...|.+++
T Consensus 51 ~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~ 126 (129)
T PF13306_consen 51 DNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT 126 (129)
T ss_dssp TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred eeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence 44566666677777765 333244456666777777777654 444455666666 777777765 56666777777776
Q ss_pred HHH
Q 045935 578 YWK 580 (587)
Q Consensus 578 ~l~ 580 (587)
+|+
T Consensus 127 ~l~ 129 (129)
T PF13306_consen 127 KLK 129 (129)
T ss_dssp ---
T ss_pred cCC
Confidence 654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=5.5e-06 Score=87.45 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=16.5
Q ss_pred CCCCcEEEcCCCcCccc-cccccccCCCCceeeccCCcc
Q 045935 423 LGGLVKLNLTGNKLSGL-VPTSLENLKGLTHLDLSYNKL 460 (587)
Q Consensus 423 ~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~l~~~~i 460 (587)
+|+|+.|.+++-.+... ......++|+|..||++++.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCc
Confidence 45555555554333211 112233445555555555443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.68 E-value=0.00011 Score=62.79 Aligned_cols=80 Identities=21% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecC
Q 045935 23 LPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSP 102 (587)
Q Consensus 23 L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (587)
=++++|.+.++. .+. ..=.-..+...+||++|.+. ....|..++.|.+|.+++|.++...|.--.-+++|..|.+.
T Consensus 21 e~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chh-hccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 456666666554 222 11112345566777777664 22345566666677777666664433333344555555555
Q ss_pred CCCC
Q 045935 103 SCSI 106 (587)
Q Consensus 103 ~~~~ 106 (587)
+|.+
T Consensus 97 nNsi 100 (233)
T KOG1644|consen 97 NNSI 100 (233)
T ss_pred Ccch
Confidence 5544
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=5.6e-05 Score=64.57 Aligned_cols=105 Identities=23% Similarity=0.177 Sum_probs=65.3
Q ss_pred CCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccC-CCcccC
Q 045935 448 KGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGE-IPPELG 526 (587)
Q Consensus 448 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~ 526 (587)
.....+++++|.+...+ .+... +.|.+|.+.+|.++.+.|..-.-++.|+.|.+.+|.+... ....+.
T Consensus 42 d~~d~iDLtdNdl~~l~---------~lp~l--~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD---------NLPHL--PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA 110 (233)
T ss_pred cccceecccccchhhcc---------cCCCc--cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc
Confidence 45667777776654211 11111 2777788888877766665555567777888887776532 224456
Q ss_pred CCCCCceecCCCCcccccC---ChhhcCCCCCccccCCCC
Q 045935 527 NLIQLEYLDVSKNMLCGQI---PKKICRLSNLLYLSFEEN 563 (587)
Q Consensus 527 ~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n 563 (587)
.||+|++|.+-+|+++... .-.+..+|+|++|++.+=
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777888888777776421 233566777777777654
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=2.1e-05 Score=83.18 Aligned_cols=158 Identities=19% Similarity=0.232 Sum_probs=98.7
Q ss_pred CCCcEEEccCCccc-cCCCCCcC-CCCCCcEEEeccccccc-CCChhhhcCCCccEEecCCCCCccCCccccccCCCCcE
Q 045935 46 QSLSHLDVSNNSLY-GSFPPEIG-NLKNLTHFFLGINQFTG-QLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGI 122 (587)
Q Consensus 46 ~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 122 (587)
.+|++|++++.... ...+..++ .+|+|++|.+++-.+.. .+.....++++|++||+++++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56888888876543 22333343 57888888888765542 2223345788888888888888765 67888888888
Q ss_pred EEeccccCcc-cCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCcc-cc
Q 045935 123 LNLGSTQLNG-SIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPE-IG 200 (587)
Q Consensus 123 L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~ 200 (587)
|.+.+-.+.. .....+..+++|+.||+|........ ..+.. .+ +--..+|+|+.||.++..+.....+. +.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~q-----Yl-ec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQ-----YL-ECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHH-----HH-HhcccCccccEEecCCcchhHHHHHHHHH
Confidence 8888776653 22345667888888888887644221 00000 00 11123788999999988776433322 23
Q ss_pred CCCcccEEecCC
Q 045935 201 SCSMLKYISLSS 212 (587)
Q Consensus 201 ~~~~L~~L~l~~ 212 (587)
.-|+|+.+..-+
T Consensus 273 sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 273 SHPNLQQIAALD 284 (699)
T ss_pred hCccHhhhhhhh
Confidence 456666665443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=5.2e-05 Score=67.71 Aligned_cols=68 Identities=25% Similarity=0.270 Sum_probs=31.2
Q ss_pred cCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCC--ccccCCCCCcCCCCCCcEEEecccccc
Q 045935 13 VPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNN--SLYGSFPPEIGNLKNLTHFFLGINQFT 83 (587)
Q Consensus 13 ~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (587)
+..-...+..|+.+++.+.+++ ++. .|-.+++|++|.+++| .+...+......+|+|+++++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3333444444444444444443 221 2334555555555555 333333333344455555555555444
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.38 E-value=0.0014 Score=64.05 Aligned_cols=135 Identities=22% Similarity=0.262 Sum_probs=74.8
Q ss_pred cCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEecccc-CcccCCccccCCCCC
Q 045935 66 IGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQ-LNGSIPAELGKCENL 144 (587)
Q Consensus 66 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L 144 (587)
+..++++++|++++|.++ .+|. -..+|++|.+++|.--..+|+.+. ++|++|++++|. +. .+| +.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 445788889999888766 4451 224688888887654445555442 578888888873 43 333 346
Q ss_pred ceeecccccCC--CCCCcccCCccccCCCCcccccCCCCCEEeCCCCc-cCC-CCCccccCCCcccEEecCCCccccccC
Q 045935 145 KSVLLSFNALP--GSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQ-FVG-RIPPEIGSCSMLKYISLSSNFVSGSIP 220 (587)
Q Consensus 145 ~~L~L~~n~~~--~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~ 220 (587)
+.|++..+... ..+|. .|+.|.+.++. ... ..+.. -.++|++|++++|... ..|
T Consensus 115 e~L~L~~n~~~~L~~LPs-------------------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP 172 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN-------------------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILP 172 (426)
T ss_pred ceEEeCCCCCcccccCcc-------------------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCc
Confidence 67776655432 12222 45555554322 110 01100 1246777777777654 334
Q ss_pred ccccCCCCCcEEEcCCc
Q 045935 221 RELCNSESLVEINLDGN 237 (587)
Q Consensus 221 ~~~~~~~~L~~L~l~~~ 237 (587)
..+. .+|+.|.++.+
T Consensus 173 ~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 173 EKLP--ESLQSITLHIE 187 (426)
T ss_pred cccc--ccCcEEEeccc
Confidence 3332 56777776654
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.02 E-value=7.5e-05 Score=77.79 Aligned_cols=187 Identities=21% Similarity=0.138 Sum_probs=103.6
Q ss_pred cccCCCCEEeCCCCc-CCCC-cCcccccCCCCCcEEEccCC-ccccCCC----CCcCCCCCCcEEEecccc-cccCCChh
Q 045935 18 GELTQLPNLLLGNNL-LSGS-LPVSLFTNLQSLSHLDVSNN-SLYGSFP----PEIGNLKNLTHFFLGINQ-FTGQLPPE 89 (587)
Q Consensus 18 ~~~~~L~~L~l~~~~-~~~~-i~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~~~~~ 89 (587)
..+++|+.+.+.++. +.+. +. .....+++|+.|+++++ ......+ .....+++|++|+++.+. +++..-..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hhCchhhHhhhcccccCChhhHH-HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 346888888887773 3321 22 45677888888888873 2221211 223467888888888886 66554455
Q ss_pred hhc-CCCccEEecCCCC-CccCCccc-cccCCCCcEEEeccccCc-cc-CCccccCCCCCceeecccccC-CCCCCcccC
Q 045935 90 IGE-LSLLEIFSSPSCS-ITGPLPEE-LSNYGSSGILNLGSTQLN-GS-IPAELGKCENLKSVLLSFNAL-PGSLPEQLS 163 (587)
Q Consensus 90 ~~~-l~~L~~L~l~~~~-~~~~~~~~-l~~~~~L~~L~l~~~~~~-~~-~~~~l~~l~~L~~L~L~~n~~-~~~~~~~l~ 163 (587)
++. |++|++|.+.+|. +++..... ...++.|++|+++.|... +. .......|++|+.|.+....- .......+.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 553 8888888877776 56553333 345788888888887743 11 222344567666655443321 000000000
Q ss_pred Cccc---cCCCCcccccCCCCCEEeCCCCccCCCC-CccccCCCcc
Q 045935 164 ELPL---SGPLPSWFGKWNQLDSLLLSSNQFVGRI-PPEIGSCSML 205 (587)
Q Consensus 164 ~l~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L 205 (587)
.+.- .........++++++.+.+..+...... ...+.+|++|
T Consensus 344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 344 GLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 0000 0011223456777777777776644322 2344556655
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.00 E-value=0.00018 Score=75.00 Aligned_cols=111 Identities=26% Similarity=0.154 Sum_probs=61.5
Q ss_pred cCCCCcccEEEccCc-cC-CCC---CCCCCcCCCCCCeEecCCCc-CCCCCCcCccC-CCCCcEEEccCcc-cccCCCcc
Q 045935 348 LGNCTVVVYLLLSNN-ML-SSK---IPGSRSRLTNLTILDLSRNE-LAGSIPPEFGD-SLKLQGLFLGNNQ-LTDSIPGS 419 (587)
Q Consensus 348 ~~~~~~L~~L~l~~~-~~-~~~---~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~-~~~L~~L~L~~~~-~~~~~~~~ 419 (587)
...++.|+.|+++++ .. ... .......+++|+.++++.+. +++....++.. +++|++|.+..|. +++.....
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 455677777777763 11 111 11223445777777777776 55554444443 6777777777665 44333322
Q ss_pred -ccCCCCCcEEEcCCCcCccc--cccccccCCCCceeeccCC
Q 045935 420 -LGRLGGLVKLNLTGNKLSGL--VPTSLENLKGLTHLDLSYN 458 (587)
Q Consensus 420 -l~~~~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~L~l~~~ 458 (587)
...++.|++|++++|..... .......|++++.+.+...
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 23567778888877764311 1222344666666555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00021 Score=64.26 Aligned_cols=86 Identities=21% Similarity=0.131 Sum_probs=52.0
Q ss_pred cccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccC-ChhhcCCCCCccccC
Q 045935 482 NIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQI-PKKICRLSNLLYLSF 560 (587)
Q Consensus 482 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l 560 (587)
+.++|+..+|.++++ .....++.|++|.||-|+|++. ..+..|+.|++|+|+.|.|.... ...+.++|+|++|-|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 455666666666532 1234566777777777777643 44566777777777777665422 234566777777777
Q ss_pred CCCcceecCcC
Q 045935 561 EENRFAVLGIN 571 (587)
Q Consensus 561 ~~n~i~~~~~~ 571 (587)
..||=.+.+..
T Consensus 96 ~ENPCc~~ag~ 106 (388)
T KOG2123|consen 96 DENPCCGEAGQ 106 (388)
T ss_pred ccCCcccccch
Confidence 77766555444
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.0012 Score=59.21 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=34.3
Q ss_pred ccCCCCCcEEEccCc--ccccCCCcccCCCCCCceecCCCCccccc-CChhhcCCCCCccccCCCCccee
Q 045935 501 LSNLSYLTSVDLHRN--KFTGEIPPELGNLIQLEYLDVSKNMLCGQ-IPKKICRLSNLLYLSFEENRFAV 567 (587)
Q Consensus 501 ~~~~~~L~~L~L~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~ 567 (587)
|..+++|+.|.++.| ++...+..-...+|+|+++++++|.|... -...+..+.+|.+|++.+|+.+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 444556666666666 44433333334456666666666655420 11223455556666666665555
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00015 Score=65.02 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=35.6
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccC-CChhhhcCCCccEEe
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQ-LPPEIGELSLLEIFS 100 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 100 (587)
+++.|+.=|+++. .|. .+.+++.|++|.||-|+++.. +.+..|++|+.|+|..|.+.+. -.+.+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3444555555554 222 445555555555555555422 2244555555555555544421 012233444444444
Q ss_pred cCCC
Q 045935 101 SPSC 104 (587)
Q Consensus 101 l~~~ 104 (587)
+..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 4443
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.27 E-value=2.4e-05 Score=79.01 Aligned_cols=185 Identities=30% Similarity=0.283 Sum_probs=93.7
Q ss_pred ccEEEccCccCCCCC----CCCCcCCCCCCeEecCCCcCCCCCCc----CccCC-CCCcEEEccCcccccCC----Cccc
Q 045935 354 VVYLLLSNNMLSSKI----PGSRSRLTNLTILDLSRNELAGSIPP----EFGDS-LKLQGLFLGNNQLTDSI----PGSL 420 (587)
Q Consensus 354 L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~~~----~~~~~-~~L~~L~L~~~~~~~~~----~~~l 420 (587)
+..+.+.+|.+.... ...+...++|+.+++++|.+.+.... .+... ..+++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777766432 23445567777788888777632211 22222 45666666666665432 2333
Q ss_pred cCCCCCcEEEcCCCcCccc----cccccc----cCCCCceeeccCCccccccccccccchhhhhhcccccccEEeccccc
Q 045935 421 GRLGGLVKLNLTGNKLSGL----VPTSLE----NLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNF 492 (587)
Q Consensus 421 ~~~~~L~~L~L~~~~l~~~----~~~~l~----~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 492 (587)
.....++.++++.|.+... .+.++. ...++++|++.+|.++...+. .....+.... ..+..+++..|.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~---~l~~~l~~~~-~~~~el~l~~n~ 244 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA---LLDEVLASGE-SLLRELDLASNK 244 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH---HHHHHHhccc-hhhHHHHHHhcC
Confidence 4456677777777665311 112222 345666666666665422211 1111111111 024446666666
Q ss_pred CccC----CchhccCC-CCCcEEEccCcccccC----CCcccCCCCCCceecCCCCccc
Q 045935 493 FDGG----LPRSLSNL-SYLTSVDLHRNKFTGE----IPPELGNLIQLEYLDVSKNMLC 542 (587)
Q Consensus 493 l~~~----~~~~~~~~-~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 542 (587)
+.+. ....+..+ +.+++++++.|.+++. ..+.+..+++++.+.+++|++.
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 5432 22333444 4556666666666532 2334445556666666666554
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.0036 Score=53.88 Aligned_cols=81 Identities=21% Similarity=0.154 Sum_probs=42.7
Q ss_pred cccEEecccccCccCCchhccCCCCCcEEEccCcccc-cCCCcccC-CCCCCceecCCCC-cccccCChhhcCCCCCccc
Q 045935 482 NIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFT-GEIPPELG-NLIQLEYLDVSKN-MLCGQIPKKICRLSNLLYL 558 (587)
Q Consensus 482 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~-~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 558 (587)
.++.+|.+++.+..+.-+.+..++.++.|.+.+|.-- +.-.+.++ -.++|+.|+|++| .|++....++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3455555555555455555556666666666666322 11001111 2356666666666 4555555556666666666
Q ss_pred cCCC
Q 045935 559 SFEE 562 (587)
Q Consensus 559 ~l~~ 562 (587)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6554
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.61 E-value=0.014 Score=30.75 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=4.9
Q ss_pred CcEEEccCcccc
Q 045935 507 LTSVDLHRNKFT 518 (587)
Q Consensus 507 L~~L~L~~n~~~ 518 (587)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.40 E-value=0.015 Score=30.67 Aligned_cols=21 Identities=48% Similarity=0.733 Sum_probs=11.7
Q ss_pred CCceecCCCCcccccCChhhcC
Q 045935 530 QLEYLDVSKNMLCGQIPKKICR 551 (587)
Q Consensus 530 ~L~~L~l~~n~l~~~~~~~l~~ 551 (587)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 44444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.15 E-value=0.00067 Score=68.77 Aligned_cols=192 Identities=27% Similarity=0.250 Sum_probs=134.0
Q ss_pred CCCeEecCCCcCCCCCC----cCccCCCCCcEEEccCcccccCCCcc----ccCC-CCCcEEEcCCCcCccc----cccc
Q 045935 377 NLTILDLSRNELAGSIP----PEFGDSLKLQGLFLGNNQLTDSIPGS----LGRL-GGLVKLNLTGNKLSGL----VPTS 443 (587)
Q Consensus 377 ~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~----l~~~-~~L~~L~L~~~~l~~~----~~~~ 443 (587)
.+..+.+.+|.+.+... .++...+.|+.|++++|.+.+..... +... ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37788888888875433 34567889999999999987443322 2333 5688899999988744 3345
Q ss_pred cccCCCCceeeccCCccccccccccccchhhhhh--cccccccEEecccccCccC----CchhccCCCC-CcEEEccCcc
Q 045935 444 LENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTN--SVAWNIATLNLSNNFFDGG----LPRSLSNLSY-LTSVDLHRNK 516 (587)
Q Consensus 444 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~-L~~L~L~~n~ 516 (587)
+..+..++.++++.|.+...+ .-..+..+.. ....++++|.+++|.++.. ....+...++ +.++++.+|.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g---~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELG---LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HhcccchhHHHHHhcccchhh---hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 566899999999999875222 1122233332 1222899999999998742 2234556666 7789999999
Q ss_pred cccC----CCcccCCC-CCCceecCCCCccccc----CChhhcCCCCCccccCCCCcceecCcC
Q 045935 517 FTGE----IPPELGNL-IQLEYLDVSKNMLCGQ----IPKKICRLSNLLYLSFEENRFAVLGIN 571 (587)
Q Consensus 517 ~~~~----~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~~ 571 (587)
+.+. ..+.+... ..+++++++.|.|.+. ..+.+..++.++++.++.|++..-+..
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~ 308 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVE 308 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHH
Confidence 8743 33455555 6889999999999763 345567888999999999998776544
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.60 E-value=0.01 Score=51.21 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=16.8
Q ss_pred CcEEEccCcccccCCCccccCCCCCcEEEcCCCc
Q 045935 402 LQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNK 435 (587)
Q Consensus 402 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 435 (587)
++.++-+++.|..+.-..+..+++++.|.+.+|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 4455555555544444444445555555554443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.74 E-value=0.11 Score=28.72 Aligned_cols=23 Identities=52% Similarity=0.632 Sum_probs=17.4
Q ss_pred cCCCCEEeCCCCcCCCCcCccccc
Q 045935 20 LTQLPNLLLGNNLLSGSLPVSLFT 43 (587)
Q Consensus 20 ~~~L~~L~l~~~~~~~~i~~~~~~ 43 (587)
+++|++|+|++|++. .+|.++|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888888888887 78766664
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.74 E-value=0.11 Score=28.72 Aligned_cols=23 Identities=52% Similarity=0.632 Sum_probs=17.4
Q ss_pred cCCCCEEeCCCCcCCCCcCccccc
Q 045935 20 LTQLPNLLLGNNLLSGSLPVSLFT 43 (587)
Q Consensus 20 ~~~L~~L~l~~~~~~~~i~~~~~~ 43 (587)
+++|++|+|++|++. .+|.++|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888888888887 78766664
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.12 E-value=0.069 Score=29.48 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=12.1
Q ss_pred CCCccccCCCCcceecCcCch
Q 045935 553 SNLLYLSFEENRFAVLGINRL 573 (587)
Q Consensus 553 ~~L~~L~l~~n~i~~~~~~~~ 573 (587)
++|+.|++++|+|..++.+.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455566666666666655544
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.12 E-value=0.069 Score=29.48 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=12.1
Q ss_pred CCCccccCCCCcceecCcCch
Q 045935 553 SNLLYLSFEENRFAVLGINRL 573 (587)
Q Consensus 553 ~~L~~L~l~~n~i~~~~~~~~ 573 (587)
++|+.|++++|+|..++.+.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455566666666666655544
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.87 E-value=0.11 Score=25.37 Aligned_cols=13 Identities=46% Similarity=0.503 Sum_probs=5.7
Q ss_pred CCCEEeCCCCcCC
Q 045935 22 QLPNLLLGNNLLS 34 (587)
Q Consensus 22 ~L~~L~l~~~~~~ 34 (587)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.65 E-value=0.0031 Score=55.33 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=44.6
Q ss_pred ccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCC
Q 045935 15 RQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELS 94 (587)
Q Consensus 15 ~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 94 (587)
..+..+...++||++.+++- .+. .-|+.++.|..|+++.+.+. -.|..+.+...+++++...|... ..|.++...+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 34445555555555555543 233 33444555555555555544 44555555555555555554444 4455555555
Q ss_pred CccEEecCCCCC
Q 045935 95 LLEIFSSPSCSI 106 (587)
Q Consensus 95 ~L~~L~l~~~~~ 106 (587)
++++++..++.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 555555555443
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.59 E-value=0.048 Score=29.43 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=8.5
Q ss_pred CCCccccCCCCcceecCcC
Q 045935 553 SNLLYLSFEENRFAVLGIN 571 (587)
Q Consensus 553 ~~L~~L~l~~n~i~~~~~~ 571 (587)
++|++|++++|+|+..++.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4455555555555544433
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.17 E-value=0.02 Score=50.45 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=44.9
Q ss_pred cccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCC
Q 045935 482 NIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFE 561 (587)
Q Consensus 482 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 561 (587)
..+.||++.|++. ..-.-|+-+..|..||++.|.+. ..|+.+++...+..++..+|..+ ..|..+...+.++.++.-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 3444555555443 33334444555556666666555 55556665556666666666555 455555666666666666
Q ss_pred CCcc
Q 045935 562 ENRF 565 (587)
Q Consensus 562 ~n~i 565 (587)
+|++
T Consensus 120 ~~~~ 123 (326)
T KOG0473|consen 120 KTEF 123 (326)
T ss_pred cCcc
Confidence 6653
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=86.16 E-value=6.9 Score=39.00 Aligned_cols=118 Identities=18% Similarity=0.093 Sum_probs=63.8
Q ss_pred CCcEEEcCCCcCcccccc--ccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCc---h
Q 045935 425 GLVKLNLTGNKLSGLVPT--SLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLP---R 499 (587)
Q Consensus 425 ~L~~L~L~~~~l~~~~~~--~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~---~ 499 (587)
++++|.+++|.+.+.... ....-++.+.+++.+-.............+.........-+..+.++.|+...... .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 477788877776644333 23334566666665532100000000000000111111156778888888764332 2
Q ss_pred hccCCCCCcEEEccCccccc----CCCcccCCCCCCceecCCCCccc
Q 045935 500 SLSNLSYLTSVDLHRNKFTG----EIPPELGNLIQLEYLDVSKNMLC 542 (587)
Q Consensus 500 ~~~~~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~ 542 (587)
....-+.+.+|++++|.+.. .+|..++.-.+++.+..+.|...
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 33445778888888888763 36666666677888888777664
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=80.09 E-value=6.5 Score=39.16 Aligned_cols=256 Identities=18% Similarity=0.069 Sum_probs=121.8
Q ss_pred CCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCc---CCCCcccEEEccCccC
Q 045935 288 SKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDL---GNCTVVVYLLLSNNML 364 (587)
Q Consensus 288 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~---~~~~~L~~L~l~~~~~ 364 (587)
.+.+++++++.+.+.+.++..+.+-.. . +.++.|+.++.+...+ ..-..+.+++++.|..
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~------------p-----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~ 226 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN------------P-----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGG 226 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC------------c-----cchhhhhhhhhHHHHhhhhhccccccccccccCCC
Confidence 567777887777777666654433211 1 2444444432211111 1113467778888776
Q ss_pred CCCCCCCCc---CCCCCCeEecCCCcCCC---CCCcCccCCCCCcEEEccCcccc----cCCC----ccccCCCCCcEEE
Q 045935 365 SSKIPGSRS---RLTNLTILDLSRNELAG---SIPPEFGDSLKLQGLFLGNNQLT----DSIP----GSLGRLGGLVKLN 430 (587)
Q Consensus 365 ~~~~~~~~~---~~~~L~~L~l~~~~i~~---~~~~~~~~~~~L~~L~L~~~~~~----~~~~----~~l~~~~~L~~L~ 430 (587)
.+.++.... .-..++.++.+...+.- ..+..+....++...+++.|... .... ..+..-+++ +|+
T Consensus 227 Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln 305 (553)
T KOG4242|consen 227 KDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLN 305 (553)
T ss_pred CccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccc
Confidence 655543321 22356677777766542 22333444556777777766432 1111 222223455 666
Q ss_pred cCCCcCcccccc-cccc-----CCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhc--c
Q 045935 431 LTGNKLSGLVPT-SLEN-----LKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSL--S 502 (587)
Q Consensus 431 L~~~~l~~~~~~-~l~~-----~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~--~ 502 (587)
+..+..-..-+. .+-. -+.=-++++..|...-. .....-.+.. .++++.+.+|.+.++..... .
T Consensus 306 ~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a------~vleaci~g~--R~q~l~~rdnnldgeg~~vgk~~ 377 (553)
T KOG4242|consen 306 SRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERA------EVLEACIFGQ--RVQVLLQRDNNLDGEGGAVGKRK 377 (553)
T ss_pred cccccCchhhhhhhhcccccccccccccCChhhcccccc------chhhccccce--eeeEeecccccccccccccccee
Confidence 666553321111 1100 01111333443332100 0000001111 45666666665544322211 1
Q ss_pred CCCC---------------------------------CcEEEccCcccccC---CCcccCCCCCCceecCCCCcccc---
Q 045935 503 NLSY---------------------------------LTSVDLHRNKFTGE---IPPELGNLIQLEYLDVSKNMLCG--- 543 (587)
Q Consensus 503 ~~~~---------------------------------L~~L~L~~n~~~~~---~~~~l~~l~~L~~L~l~~n~l~~--- 543 (587)
.-+. +.++.++.|+.... .-+.+.+-+.+..|++++|....
T Consensus 378 ~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~ga 457 (553)
T KOG4242|consen 378 QSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGA 457 (553)
T ss_pred eccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCC
Confidence 1122 44555555555421 11233445778888888886643
Q ss_pred -cCChhhcCCCCCccccCCCCcceecC
Q 045935 544 -QIPKKICRLSNLLYLSFEENRFAVLG 569 (587)
Q Consensus 544 -~~~~~l~~l~~L~~L~l~~n~i~~~~ 569 (587)
.+|.+++.-..++.+..+.|.+..-+
T Consensus 458 p~lpkalq~n~rlr~ipds~n~p~~~g 484 (553)
T KOG4242|consen 458 PPLPKALQSNCRLRPIPDSLNLPEDPG 484 (553)
T ss_pred CcCccccCCCCccCCCCCCCCCccccc
Confidence 55677777777888888877655443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.03 E-value=2.4 Score=23.34 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=10.5
Q ss_pred CCCccccCCCCcceec
Q 045935 553 SNLLYLSFEENRFAVL 568 (587)
Q Consensus 553 ~~L~~L~l~~n~i~~~ 568 (587)
.+|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566777777766555
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.64 E-value=1.2 Score=25.07 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=8.5
Q ss_pred CCccccCCCCcceecCc
Q 045935 554 NLLYLSFEENRFAVLGI 570 (587)
Q Consensus 554 ~L~~L~l~~n~i~~~~~ 570 (587)
+|++|+|++|.|...+.
T Consensus 3 ~L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 3 SLRELDLSNNKLGDEGA 19 (28)
T ss_pred ccCEEECCCCCCCHHHH
Confidence 45555555555544443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.20 E-value=3.3 Score=22.74 Aligned_cols=13 Identities=38% Similarity=0.565 Sum_probs=7.3
Q ss_pred cccEEecccccCc
Q 045935 482 NIATLNLSNNFFD 494 (587)
Q Consensus 482 ~L~~L~L~~~~l~ 494 (587)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 5555555555555
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.87 E-value=5.6 Score=21.72 Aligned_cols=12 Identities=33% Similarity=0.227 Sum_probs=7.3
Q ss_pred CCCCceecCCCC
Q 045935 528 LIQLEYLDVSKN 539 (587)
Q Consensus 528 l~~L~~L~l~~n 539 (587)
|++|++|++++|
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 455666666666
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.68 E-value=6.8 Score=39.87 Aligned_cols=60 Identities=35% Similarity=0.408 Sum_probs=34.5
Q ss_pred cccEEecccccCcc--CCchhccCCCCCcEEEccCc--ccccCCCcccC--CCCCCceecCCCCcccc
Q 045935 482 NIATLNLSNNFFDG--GLPRSLSNLSYLTSVDLHRN--KFTGEIPPELG--NLIQLEYLDVSKNMLCG 543 (587)
Q Consensus 482 ~L~~L~L~~~~l~~--~~~~~~~~~~~L~~L~L~~n--~~~~~~~~~l~--~l~~L~~L~l~~n~l~~ 543 (587)
.+..+++++|++.. .+...-...|.|+.|+|++| .+... ..+. ....|++|.+.||++..
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 56666666666542 12222234577888888888 33321 1221 23467888888888764
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.09 E-value=7.7 Score=39.53 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=46.0
Q ss_pred cCCCCCcEEEccCcccccC--CCcccCCCCCCceecCCCC--cccccC-ChhhcCCCCCccccCCCCcceecCc
Q 045935 502 SNLSYLTSVDLHRNKFTGE--IPPELGNLIQLEYLDVSKN--MLCGQI-PKKICRLSNLLYLSFEENRFAVLGI 570 (587)
Q Consensus 502 ~~~~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n--~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~ 570 (587)
.+.+.+..+.|++|++... +...-+..|.|+.|+|++| .+.... ...+.+ ..|++|-+.|||++.-=.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFS 287 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchh
Confidence 4567888999999998632 1112234589999999999 443211 123334 558999999999876533
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.30 E-value=58 Score=40.71 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=20.9
Q ss_pred ccCCCccccccCccccccCCCCEEeCCCCcCC
Q 045935 3 YLSGNVLNGTVPRQIGELTQLPNLLLGNNLLS 34 (587)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 34 (587)
||++|.|+..-+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46667776666666666667777777666543
Done!