Query 045935
Match_columns 587
No_of_seqs 221 out of 2366
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 12:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.2E-61 7.7E-66 525.8 36.3 535 2-571 105-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.1E-61 2.8E-65 521.4 35.7 552 1-582 54-709 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.8E-54 3E-58 462.5 42.1 552 1-569 29-625 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-52 6E-57 452.3 38.4 546 2-580 9-612 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.1E-51 3.7E-56 440.3 38.8 509 4-568 19-562 (606)
6 3t6q_A CD180 antigen; protein- 100.0 4.5E-51 1.5E-55 435.5 35.4 515 23-582 14-552 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 6.1E-51 2.1E-55 434.4 29.2 515 2-568 16-560 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-49 1.2E-53 420.8 28.6 482 1-546 36-562 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-47 7.9E-52 419.8 34.8 512 4-567 11-561 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-47 1.1E-51 418.8 32.6 502 24-577 7-550 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.8E-46 6.2E-51 397.3 30.2 501 12-570 21-535 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-45 8E-50 386.7 27.9 471 46-568 26-512 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 6.3E-45 2.1E-49 385.5 29.3 498 23-582 9-523 (570)
14 4eco_A Uncharacterized protein 100.0 3E-45 1E-49 389.7 17.8 362 103-573 192-607 (636)
15 4ecn_A Leucine-rich repeat pro 100.0 1.1E-43 3.9E-48 383.0 26.7 394 80-568 435-866 (876)
16 2z7x_B TOLL-like receptor 1, v 100.0 3E-43 1E-47 367.8 25.1 458 1-567 4-482 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 8.6E-43 3E-47 367.2 26.6 476 46-582 5-502 (549)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-41 6.3E-46 364.1 29.0 511 12-568 45-582 (635)
19 4ecn_A Leucine-rich repeat pro 100.0 2.3E-41 7.9E-46 365.1 27.9 445 21-577 323-851 (876)
20 4eco_A Uncharacterized protein 100.0 1.9E-42 6.3E-47 368.3 15.5 460 22-576 82-589 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-39 3.8E-44 350.2 33.5 509 24-581 34-571 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-40 1.6E-44 346.3 26.0 465 21-567 31-511 (562)
23 2z7x_B TOLL-like receptor 1, v 100.0 8.4E-41 2.9E-45 349.3 19.6 448 49-582 3-473 (520)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.9E-38 3.4E-42 328.6 23.3 456 43-582 28-502 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 2E-36 6.8E-41 310.9 25.7 365 46-461 30-408 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.1E-35 3.7E-40 305.4 30.6 389 50-497 14-411 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 9.8E-35 3.4E-39 295.3 29.1 409 19-573 9-436 (454)
28 1o6v_A Internalin A; bacterial 100.0 2.2E-33 7.5E-38 288.2 34.9 190 18-238 43-232 (466)
29 1o6v_A Internalin A; bacterial 100.0 1.2E-33 4E-38 290.3 30.4 346 44-543 44-389 (466)
30 1jl5_A Outer protein YOPM; leu 100.0 1.6E-33 5.4E-38 286.4 29.2 387 45-568 10-411 (454)
31 3bz5_A Internalin-J, INLJ; leu 100.0 3.1E-33 1E-37 284.5 31.1 196 8-239 29-224 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 2E-32 6.9E-37 282.5 26.5 300 180-542 33-333 (477)
33 2id5_A Lingo-1, leucine rich r 100.0 3.9E-32 1.4E-36 280.3 26.7 200 24-240 14-213 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-31 7.3E-36 270.9 29.2 349 1-501 46-394 (457)
35 4fmz_A Internalin; leucine ric 100.0 1.1E-30 3.8E-35 257.9 29.5 306 17-460 40-345 (347)
36 4fmz_A Internalin; leucine ric 100.0 1E-30 3.6E-35 258.1 27.1 170 352-566 177-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 2.3E-30 7.8E-35 259.7 28.0 135 68-216 43-178 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 1.8E-30 6.3E-35 260.4 26.6 176 19-216 43-218 (390)
39 3oja_B Anopheles plasmodium-re 100.0 5E-30 1.7E-34 271.2 25.7 135 20-155 50-184 (597)
40 3oja_B Anopheles plasmodium-re 100.0 2.9E-29 9.8E-34 265.4 27.9 309 69-518 50-358 (597)
41 1xku_A Decorin; proteoglycan, 100.0 2.1E-28 7.2E-33 239.5 27.9 198 22-240 32-229 (330)
42 1xku_A Decorin; proteoglycan, 100.0 2.2E-28 7.5E-33 239.4 27.4 269 179-564 52-330 (330)
43 1z7x_W Ribonuclease inhibitor; 100.0 1E-33 3.5E-38 291.3 -14.8 112 350-461 282-411 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 7.8E-33 2.7E-37 284.7 -8.3 87 482-568 342-442 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 4.6E-28 1.6E-32 237.2 25.7 197 22-240 34-230 (332)
46 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-29 4.2E-34 245.6 14.2 249 21-301 50-303 (313)
47 2ft3_A Biglycan; proteoglycan, 100.0 6.2E-28 2.1E-32 236.3 25.1 287 71-458 34-330 (332)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-28 5.7E-33 237.6 17.8 242 46-318 50-296 (313)
49 3ogk_B Coronatine-insensitive 99.9 1.4E-29 4.6E-34 269.1 -2.6 233 40-297 67-326 (592)
50 4fcg_A Uncharacterized protein 99.9 1.2E-26 4E-31 225.9 17.9 225 20-277 80-314 (328)
51 3ogk_B Coronatine-insensitive 99.9 5.2E-30 1.8E-34 272.3 -7.3 431 65-563 68-548 (592)
52 1ozn_A Reticulon 4 receptor; N 99.9 7.9E-26 2.7E-30 216.3 19.8 223 2-241 16-239 (285)
53 2z66_A Variable lymphocyte rec 99.9 3.6E-26 1.2E-30 221.2 17.6 206 21-240 28-236 (306)
54 4fcg_A Uncharacterized protein 99.9 1.3E-25 4.3E-30 218.6 20.3 221 46-299 81-311 (328)
55 2z80_A TOLL-like receptor 2, v 99.9 3.6E-26 1.2E-30 225.8 13.8 274 3-304 37-316 (353)
56 2z66_A Variable lymphocyte rec 99.9 1.8E-25 6E-30 216.3 17.4 225 1-241 32-262 (306)
57 1ozn_A Reticulon 4 receptor; N 99.9 8.3E-25 2.8E-29 209.2 21.0 225 332-568 15-240 (285)
58 3zyi_A Leucine-rich repeat-con 99.9 9.5E-25 3.3E-29 223.0 21.8 230 328-568 75-305 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 7.8E-25 2.7E-29 222.9 20.8 230 328-568 64-294 (440)
60 3zyj_A Leucine-rich repeat-con 99.9 1.4E-24 4.7E-29 221.1 21.0 242 4-278 50-293 (440)
61 2p1m_B Transport inhibitor res 99.9 4.3E-29 1.5E-33 265.5 -13.0 405 92-564 103-542 (594)
62 2z80_A TOLL-like receptor 2, v 99.9 2.8E-25 9.5E-30 219.4 15.1 206 16-238 26-233 (353)
63 3zyi_A Leucine-rich repeat-con 99.9 1.3E-24 4.3E-29 222.1 20.4 242 4-278 61-304 (452)
64 2p1m_B Transport inhibitor res 99.9 5.2E-28 1.8E-32 257.1 -8.1 205 68-299 103-324 (594)
65 1wwl_A Monocyte differentiatio 99.9 2.1E-25 7.2E-30 215.9 8.6 208 350-569 93-312 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 6.8E-25 2.3E-29 212.9 10.3 254 3-299 16-272 (317)
67 1wwl_A Monocyte differentiatio 99.9 7.5E-25 2.6E-29 212.1 10.0 252 16-303 38-310 (312)
68 3g06_A SSPH2 (leucine-rich rep 99.9 4.9E-22 1.7E-26 207.8 28.6 165 352-550 141-305 (622)
69 3g06_A SSPH2 (leucine-rich rep 99.9 7.2E-22 2.5E-26 206.6 28.5 94 22-131 41-134 (622)
70 2z62_A TOLL-like receptor 4, v 99.9 1.1E-22 3.7E-27 193.4 20.1 233 334-579 13-249 (276)
71 3o53_A Protein LRIM1, AGAP0063 99.9 4.9E-24 1.7E-28 206.8 8.3 257 266-561 12-270 (317)
72 2z62_A TOLL-like receptor 4, v 99.9 7.4E-23 2.5E-27 194.6 16.3 215 12-243 21-240 (276)
73 2o6q_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 185.9 23.9 204 354-569 18-221 (270)
74 3oja_A Leucine-rich immune mol 99.9 1.9E-23 6.4E-28 214.4 12.3 241 13-296 26-269 (487)
75 2o6q_A Variable lymphocyte rec 99.9 1.2E-21 4.2E-26 185.3 23.2 202 22-240 17-218 (270)
76 3oja_A Leucine-rich immune mol 99.9 1.2E-22 4.1E-27 208.4 13.1 214 330-566 36-250 (487)
77 3rfs_A Internalin B, repeat mo 99.9 6.2E-22 2.1E-26 187.5 16.8 182 17-240 37-218 (272)
78 3rfs_A Internalin B, repeat mo 99.9 5.8E-22 2E-26 187.7 14.5 163 90-281 59-222 (272)
79 1p9a_G Platelet glycoprotein I 99.9 3.8E-21 1.3E-25 183.4 20.2 203 17-240 6-208 (290)
80 1p9a_G Platelet glycoprotein I 99.9 4E-21 1.4E-25 183.2 19.3 205 348-568 6-210 (290)
81 3goz_A Leucine-rich repeat-con 99.9 7.5E-23 2.6E-27 202.4 6.4 262 2-280 3-300 (362)
82 2ast_B S-phase kinase-associat 99.9 7.8E-23 2.7E-27 200.7 4.8 249 2-284 52-313 (336)
83 2xwt_C Thyrotropin receptor; s 99.9 3.2E-21 1.1E-25 179.0 14.1 196 22-237 32-236 (239)
84 4glp_A Monocyte differentiatio 99.9 3.8E-21 1.3E-25 185.9 15.0 206 352-568 91-309 (310)
85 2ca6_A RAN GTPase-activating p 99.9 2.7E-23 9.1E-28 207.9 -1.6 220 13-240 24-287 (386)
86 1h6u_A Internalin H; cell adhe 99.8 1.3E-20 4.5E-25 181.5 17.0 205 4-240 26-230 (308)
87 3m19_A Variable lymphocyte rec 99.8 7.6E-20 2.6E-24 170.9 18.8 181 352-568 14-194 (251)
88 2ca6_A RAN GTPase-activating p 99.8 9.2E-23 3.1E-27 204.0 -1.6 264 22-306 10-320 (386)
89 4glp_A Monocyte differentiatio 99.8 1.4E-20 5E-25 181.8 13.7 204 70-302 91-307 (310)
90 2xwt_C Thyrotropin receptor; s 99.8 4.9E-21 1.7E-25 177.7 9.3 197 352-563 31-236 (239)
91 3goz_A Leucine-rich repeat-con 99.8 5.5E-22 1.9E-26 196.2 3.0 262 25-306 2-301 (362)
92 3m19_A Variable lymphocyte rec 99.8 1.8E-19 6.3E-24 168.3 19.6 178 22-216 15-192 (251)
93 1h6u_A Internalin H; cell adhe 99.8 7.9E-20 2.7E-24 176.1 16.4 195 351-570 40-234 (308)
94 2ast_B S-phase kinase-associat 99.8 2.7E-21 9.1E-26 189.7 5.7 255 21-310 47-314 (336)
95 2o6s_A Variable lymphocyte rec 99.8 4.3E-19 1.5E-23 160.8 14.7 179 25-227 11-189 (208)
96 4ay9_X Follicle-stimulating ho 99.8 8.5E-19 2.9E-23 172.3 13.5 181 21-216 30-215 (350)
97 1h6t_A Internalin B; cell adhe 99.8 3.8E-18 1.3E-22 162.7 15.7 183 4-216 31-213 (291)
98 2o6s_A Variable lymphocyte rec 99.8 7.6E-18 2.6E-22 152.5 15.7 179 2-204 12-190 (208)
99 1m9s_A Internalin B; cell inva 99.8 7.6E-18 2.6E-22 176.0 16.0 186 3-218 27-212 (605)
100 4ay9_X Follicle-stimulating ho 99.8 4.8E-18 1.6E-22 167.0 13.4 222 327-563 29-256 (350)
101 4fs7_A Uncharacterized protein 99.7 8.4E-17 2.9E-21 160.9 21.8 332 36-453 61-393 (394)
102 3cvr_A Invasion plasmid antige 99.7 1.4E-17 4.9E-22 171.9 16.4 179 22-242 60-245 (571)
103 1h6t_A Internalin B; cell adhe 99.7 9.9E-18 3.4E-22 159.9 13.8 173 348-543 42-214 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 1.7E-17 5.9E-22 151.1 13.9 127 25-155 15-142 (220)
105 2v9t_B SLIT homolog 2 protein 99.7 2.1E-17 7.2E-22 150.6 14.3 152 24-192 14-165 (220)
106 3cvr_A Invasion plasmid antige 99.7 9.9E-17 3.4E-21 165.6 19.6 185 47-286 60-252 (571)
107 2v9t_B SLIT homolog 2 protein 99.7 7E-17 2.4E-21 147.1 15.4 134 400-542 32-165 (220)
108 4ezg_A Putative uncharacterize 99.7 2.3E-17 7.8E-22 147.8 11.6 153 43-216 41-194 (197)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-16 3.4E-21 146.0 15.7 132 402-542 34-166 (220)
110 4fs7_A Uncharacterized protein 99.7 2.2E-16 7.4E-21 157.9 18.8 214 346-581 179-392 (394)
111 1m9s_A Internalin B; cell inva 99.7 6.9E-17 2.4E-21 168.8 15.4 186 334-544 27-212 (605)
112 2xot_A Amphoterin-induced prot 99.7 9.3E-17 3.2E-21 158.4 14.5 179 24-216 21-202 (361)
113 4ezg_A Putative uncharacterize 99.7 6.4E-17 2.2E-21 144.9 12.2 153 67-240 41-194 (197)
114 2xot_A Amphoterin-induced prot 99.7 7.3E-17 2.5E-21 159.1 13.5 177 355-567 21-203 (361)
115 3sb4_A Hypothetical leucine ri 99.7 2.1E-17 7.3E-22 160.9 9.4 245 327-582 48-326 (329)
116 3e6j_A Variable lymphocyte rec 99.7 3.1E-16 1.1E-20 143.8 15.6 154 23-194 21-174 (229)
117 3e6j_A Variable lymphocyte rec 99.7 6E-16 2E-20 141.9 17.3 152 48-216 21-172 (229)
118 1xeu_A Internalin C; cellular 99.7 2E-17 6.9E-22 155.1 7.5 180 8-218 8-187 (263)
119 3sb4_A Hypothetical leucine ri 99.7 3.4E-17 1.1E-21 159.5 8.0 222 178-454 100-327 (329)
120 1xeu_A Internalin C; cellular 99.7 2.4E-16 8.1E-21 147.8 12.3 164 2-194 24-187 (263)
121 4fdw_A Leucine rich hypothetic 99.6 2.8E-14 9.6E-19 141.7 21.1 209 346-566 174-383 (401)
122 1dce_A Protein (RAB geranylger 99.6 6.6E-18 2.3E-22 175.5 -5.8 178 18-216 346-546 (567)
123 2ell_A Acidic leucine-rich nuc 99.6 3.5E-15 1.2E-19 129.8 11.9 133 20-155 23-160 (168)
124 2je0_A Acidic leucine-rich nuc 99.6 1.9E-15 6.6E-20 128.6 9.9 129 19-150 15-148 (149)
125 4fdw_A Leucine rich hypothetic 99.6 4.7E-14 1.6E-18 140.0 20.3 207 20-236 112-332 (401)
126 4gt6_A Cell surface protein; l 99.6 3E-13 1E-17 135.0 25.0 109 345-457 258-366 (394)
127 1w8a_A SLIT protein; signaling 99.6 1.6E-14 5.4E-19 128.5 12.8 129 24-156 11-140 (192)
128 1w8a_A SLIT protein; signaling 99.6 9.8E-15 3.3E-19 129.8 11.5 128 2-133 13-141 (192)
129 4b8c_D Glucose-repressible alc 99.6 9.5E-16 3.2E-20 164.5 5.7 152 2-160 178-334 (727)
130 2ell_A Acidic leucine-rich nuc 99.6 9.9E-15 3.4E-19 127.0 10.8 84 46-131 24-108 (168)
131 4gt6_A Cell surface protein; l 99.5 7.3E-13 2.5E-17 132.2 24.0 131 394-564 259-389 (394)
132 1dce_A Protein (RAB geranylger 99.5 6.6E-17 2.3E-21 168.0 -5.9 103 175-295 459-566 (567)
133 4b8c_D Glucose-repressible alc 99.5 1.5E-15 5.1E-20 162.9 3.8 191 21-237 173-369 (727)
134 2je0_A Acidic leucine-rich nuc 99.5 5.6E-15 1.9E-19 125.7 6.6 124 1-127 21-149 (149)
135 2wfh_A SLIT homolog 2 protein 99.5 4.7E-14 1.6E-18 125.3 12.6 127 24-155 13-139 (193)
136 2wfh_A SLIT homolog 2 protein 99.5 7.7E-14 2.6E-18 123.9 13.1 127 49-192 13-139 (193)
137 2o6r_A Variable lymphocyte rec 99.5 2.5E-13 8.4E-18 119.2 14.1 130 23-156 9-138 (177)
138 2o6r_A Variable lymphocyte rec 99.5 2.3E-13 7.7E-18 119.4 13.4 128 2-133 12-139 (177)
139 1a9n_A U2A', U2A'; complex (nu 99.5 8.5E-14 2.9E-18 121.9 10.5 134 15-154 13-152 (176)
140 4h09_A Hypothetical leucine ri 99.5 8.3E-12 2.8E-16 124.0 24.5 188 374-580 192-379 (379)
141 1ds9_A Outer arm dynein; leuci 99.4 1.6E-15 5.3E-20 135.9 -5.2 166 17-192 14-185 (198)
142 1a9n_A U2A', U2A'; complex (nu 99.4 1.9E-13 6.5E-18 119.7 7.7 58 95-154 43-100 (176)
143 1ds9_A Outer arm dynein; leuci 99.4 4.5E-15 1.5E-19 132.9 -5.4 135 419-569 43-188 (198)
144 4h09_A Hypothetical leucine ri 99.4 4.5E-11 1.6E-15 118.7 22.7 171 395-580 189-359 (379)
145 3un9_A NLR family member X1; l 99.3 1.4E-14 4.7E-19 142.4 -6.1 162 400-566 101-283 (372)
146 3g39_A Variable lymphocyte rec 99.3 8.9E-12 3E-16 108.1 11.7 89 482-570 31-119 (170)
147 3un9_A NLR family member X1; l 99.3 5.8E-14 2E-18 138.0 -4.1 172 400-575 72-261 (372)
148 3g39_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 105.8 11.9 105 23-131 11-115 (170)
149 2r9u_A Variable lymphocyte rec 99.3 2.7E-11 9.1E-16 105.4 11.7 98 482-580 34-131 (174)
150 2r9u_A Variable lymphocyte rec 99.3 3.8E-11 1.3E-15 104.4 11.9 104 24-131 15-118 (174)
151 2ifg_A High affinity nerve gro 99.0 1.1E-09 3.6E-14 107.3 10.0 103 25-131 12-116 (347)
152 2ra8_A Uncharacterized protein 99.0 8.2E-11 2.8E-15 114.4 2.0 163 397-564 169-341 (362)
153 2ifg_A High affinity nerve gro 98.9 2.6E-09 8.9E-14 104.5 10.2 102 51-155 13-116 (347)
154 2ra8_A Uncharacterized protein 98.9 2.5E-10 8.6E-15 111.0 1.0 88 140-238 250-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 1.6E-09 5.3E-14 95.1 0.3 71 499-569 87-167 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 8.9E-09 3E-13 90.3 1.8 118 420-542 32-164 (185)
157 3e4g_A ATP synthase subunit S, 98.4 6.6E-08 2.3E-12 82.2 1.7 82 47-128 62-149 (176)
158 3e4g_A ATP synthase subunit S, 98.4 8.7E-08 3E-12 81.4 2.4 91 63-153 54-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 3E-07 1E-11 84.5 4.2 64 18-84 167-234 (267)
160 3rw6_A Nuclear RNA export fact 98.2 5.5E-07 1.9E-11 82.7 2.7 76 482-559 171-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 1.5E-05 5.2E-10 69.0 1.6 67 500-566 93-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 2.2E-05 7.7E-10 67.9 2.5 115 422-541 39-169 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0016 5.4E-08 52.6 5.6 57 484-542 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.0065 2.2E-07 48.9 5.7 37 482-518 32-68 (130)
165 2lz0_A Uncharacterized protein 91.2 0.6 2.1E-05 35.1 6.7 47 32-80 7-53 (100)
166 2lz0_A Uncharacterized protein 86.4 1.8 6E-05 32.5 6.2 50 6-57 5-54 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-61 Score=525.79 Aligned_cols=535 Identities=31% Similarity=0.443 Sum_probs=363.9
Q ss_pred cccCCCccccccCc--cccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCC---cCCCCCCcEEE
Q 045935 2 RYLSGNVLNGTVPR--QIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPE---IGNLKNLTHFF 76 (587)
Q Consensus 2 l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~ 76 (587)
|+|++|.++|.+|. .++++++|++|++++|.+.+.+|...+.++++|++|++++|.+.+..+.. +.++++|++|+
T Consensus 105 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~ 184 (768)
T 3rgz_A 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184 (768)
T ss_dssp EECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEE
T ss_pred EECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEE
Confidence 45555555555555 55555555555555555554455333355555555555555555444433 45555555555
Q ss_pred ecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCC
Q 045935 77 LGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPG 156 (587)
Q Consensus 77 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 156 (587)
+++|.+.+..+. ..+++|++|++++|.+++.++. +.++++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 185 Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 185 ISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261 (768)
T ss_dssp CCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE
T ss_pred CCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC
Confidence 555555543322 5556666666666666554444 5566666666666666655555556666666666666665543
Q ss_pred CCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCC-CcccEEecCCCccccccCccccCCCCCcEEEcC
Q 045935 157 SLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSC-SMLKYISLSSNFVSGSIPRELCNSESLVEINLD 235 (587)
Q Consensus 157 ~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 235 (587)
..| .. .+++|++|++++|.+++.+|..+.+. ++|++|++++|.+++..|..+..+++|++|+++
T Consensus 262 ~~~-------------~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 262 PIP-------------PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp SCC-------------CC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred ccC-------------cc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 222 21 45566666666666665555555543 666666666666666666666666666666666
Q ss_pred Ccccccc-----------cccccccccccccccCcccCCCC--ccEEeccCCCCccccchhhhh-cCCccceecccccce
Q 045935 236 GNLLSGT-----------IEDLVLGNNHIHGSIPEYLSELP--LVVLDLDSNNFTGIIPLSLWK-NSKNLIEFSAASNLL 301 (587)
Q Consensus 236 ~~~~~~~-----------~~~l~l~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~ 301 (587)
+|.+.+. +..+++++|.+.+.+|..+..++ ++.+++++|.+.+.++..+.. .++.|+++++.+|.+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 6655422 22355555666556666665543 666677666666555544432 145667777777766
Q ss_pred eecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeE
Q 045935 302 EGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTIL 381 (587)
Q Consensus 302 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 381 (587)
.+..|..+..++.++ .+++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|++|
T Consensus 407 ~~~~p~~l~~l~~L~---------------~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 407 TGKIPPTLSNCSELV---------------SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp EEECCGGGGGCTTCC---------------EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccccCHHHhcCCCCC---------------EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 666665555554444 44888888877777778888888888888888777777777778888888
Q ss_pred ecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccc
Q 045935 382 DLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461 (587)
Q Consensus 382 ~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~ 461 (587)
++++|.+.+..|..+..+++|++|++++|.+++..+..++.+++|++|++++|.+.+..|..+..+++|++|++++|++.
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 88888887777878888888888888888887777777888888888888888887777778888888888888887753
Q ss_pred cc--c-------------------------------------------------------------ccccccchhhhhhc
Q 045935 462 VQ--H-------------------------------------------------------------NKLSGPLNELFTNS 478 (587)
Q Consensus 462 ~~--~-------------------------------------------------------------~~~~~~~~~~~~~~ 478 (587)
-. . +.+.+..+..+...
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 00 0 11111122222223
Q ss_pred ccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccc
Q 045935 479 VAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYL 558 (587)
Q Consensus 479 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 558 (587)
. +|+.|++++|.+++.+|..++.+++|+.|+|++|++++.+|..++++++|++||+++|.+++.+|..|..++.|++|
T Consensus 632 ~--~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 632 G--SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp B--CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred c--cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 3 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceecCcC
Q 045935 559 SFEENRFAVLGIN 571 (587)
Q Consensus 559 ~l~~n~i~~~~~~ 571 (587)
++++|++++.-++
T Consensus 710 ~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 710 DLSNNNLSGPIPE 722 (768)
T ss_dssp ECCSSEEEEECCS
T ss_pred ECcCCcccccCCC
Confidence 9999999876544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.1e-61 Score=521.42 Aligned_cols=552 Identities=29% Similarity=0.407 Sum_probs=460.7
Q ss_pred CcccCCCccccc---cCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCC--CcCCCCCCcEE
Q 045935 1 FRYLSGNVLNGT---VPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPP--EIGNLKNLTHF 75 (587)
Q Consensus 1 ~l~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L 75 (587)
+|+|+++.+.|. +|+++.++++|+.++++.+.+. .++ ..|.++++|++|+|++|.+.+.+|. .+.++++|++|
T Consensus 54 ~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 131 (768)
T 3rgz_A 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131 (768)
T ss_dssp EEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEE
T ss_pred EEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCc-hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEE
Confidence 378899999988 8888889999999998888776 455 5678889999999999988877777 78889999999
Q ss_pred EecccccccCCChhh-hcCCCccEEecCCCCCccCCccc---cccCCCCcEEEeccccCcccCCccccCCCCCceeeccc
Q 045935 76 FLGINQFTGQLPPEI-GELSLLEIFSSPSCSITGPLPEE---LSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSF 151 (587)
Q Consensus 76 ~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 151 (587)
++++|.+.+..|..+ .++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 132 ~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 209 (768)
T 3rgz_A 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS 209 (768)
T ss_dssp ECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCS
T ss_pred ECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcC
Confidence 999988877766655 78889999999999888777766 7788889999999888875444 37788899999988
Q ss_pred ccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcE
Q 045935 152 NALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVE 231 (587)
Q Consensus 152 n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 231 (587)
|.+.+. +|. +.++++|++|++++|.+++..|..+.++++|++|++++|.+++..|.. .+++|++
T Consensus 210 n~l~~~-------------~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 210 NNFSTG-------------IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp SCCCSC-------------CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred CcCCCC-------------Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 886532 333 667778888888888887777777888888888888888877665554 6778888
Q ss_pred EEcCCccccc-----------ccccccccccccccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceeccccc
Q 045935 232 INLDGNLLSG-----------TIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASN 299 (587)
Q Consensus 232 L~l~~~~~~~-----------~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 299 (587)
|++++|.+.+ .+..+++++|.+.+..|..+..++ |+.|++++|.+.+.+|...+..+++|++|++.+|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 8888887652 344577778888888888888888 8999999988887888776666888999999988
Q ss_pred ceeecccccccchh-hhHHHHhhccccc------------ccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCC
Q 045935 300 LLEGYLPWEIGNAI-ALERLVKIHDLSF------------IQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSS 366 (587)
Q Consensus 300 ~~~~~~~~~~~~~~-~l~~l~~~~~~~~------------~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~ 366 (587)
.+.+..|..+..+. .++.+ ++....+ ...++.+++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L-~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTL-DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEE-ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ccCccccHHHHhhhcCCcEE-EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 88888887777665 55544 2222111 4568899999999998899999999999999999999988
Q ss_pred CCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCcccccccccc
Q 045935 367 KIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLEN 446 (587)
Q Consensus 367 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~ 446 (587)
..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|.++..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 88888999999999999999999899999999999999999999999889999999999999999999999889999999
Q ss_pred CCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchh--------------------------
Q 045935 447 LKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRS-------------------------- 500 (587)
Q Consensus 447 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-------------------------- 500 (587)
+++|++|++++|.+ .+..+..+.... +|+.|++++|++.+.+|..
T Consensus 513 l~~L~~L~L~~N~l-------~~~~p~~l~~l~--~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 513 LENLAILKLSNNSF-------SGNIPAELGDCR--SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp CTTCCEEECCSSCC-------EEECCGGGGGCT--TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CCCCCEEECCCCcc-------cCcCCHHHcCCC--CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 99999999999655 355666666666 8999999999887655543
Q ss_pred --------------------------------------------ccCCCCCcEEEccCcccccCCCcccCCCCCCceecC
Q 045935 501 --------------------------------------------LSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDV 536 (587)
Q Consensus 501 --------------------------------------------~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 536 (587)
+..+++|+.||+++|++++.+|..++++++|+.|++
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeC
Confidence 334678999999999999999999999999999999
Q ss_pred CCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhhHHHHHH
Q 045935 537 SKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVKYWKIF 582 (587)
Q Consensus 537 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l~~~ 582 (587)
++|.+++.+|..|+++++|++|++++|++++..++.+..++.|+.+
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 9999999999999999999999999999999999999888877654
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.8e-54 Score=462.46 Aligned_cols=552 Identities=20% Similarity=0.153 Sum_probs=401.6
Q ss_pred CcccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEeccc
Q 045935 1 FRYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGIN 80 (587)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 80 (587)
+|+|++|.|++..+.+|.++++|++|++++|.+.+..| +.|.++++|++|++++|.+....+.+|.++++|++|++++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence 37888999988887889999999999999998884444 78888999999999999888555557889999999999999
Q ss_pred ccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCcccc--CCCCCceeecccccCCCCC
Q 045935 81 QFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELG--KCENLKSVLLSFNALPGSL 158 (587)
Q Consensus 81 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~L~~n~~~~~~ 158 (587)
.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.+..
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence 88866667888899999999999988887788888899999999999988866555543 5688999999998887665
Q ss_pred CcccCCcc------ccCCC-----Cccc---ccCCCCCEEeCCCCccCCCCCccccCCCc--ccEEecCCCccccccCcc
Q 045935 159 PEQLSELP------LSGPL-----PSWF---GKWNQLDSLLLSSNQFVGRIPPEIGSCSM--LKYISLSSNFVSGSIPRE 222 (587)
Q Consensus 159 ~~~l~~l~------~~~~~-----~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~ 222 (587)
|..+..+. +.+.- ...+ ...++|+.|++++|.+++..+.++.+++. |++|++++|.+++..+.+
T Consensus 188 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 267 (680)
T 1ziw_A 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267 (680)
T ss_dssp TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc
Confidence 54433221 00000 0000 01245666666666655555555555533 666666666666555555
Q ss_pred ccCCCCCcEEEcCCccccccc----------ccccccccccc---------cccCcccCCCC-ccEEeccCCCCccccch
Q 045935 223 LCNSESLVEINLDGNLLSGTI----------EDLVLGNNHIH---------GSIPEYLSELP-LVVLDLDSNNFTGIIPL 282 (587)
Q Consensus 223 ~~~~~~L~~L~l~~~~~~~~~----------~~l~l~~~~~~---------~~~~~~~~~~~-L~~L~l~~~~~~~~~~~ 282 (587)
|..+++|++|++++|.+.+.. ..++++++... ......+..++ ++.+++++|.+.+..+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 666666666666665544211 11222221111 11112445555 66666666666643333
Q ss_pred hhhhcCCccceecccccceeecc--cccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEcc
Q 045935 283 SLWKNSKNLIEFSAASNLLEGYL--PWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLS 360 (587)
Q Consensus 283 ~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~ 360 (587)
.+..+++|+++++++|.+.... ...+..+ ....++.++++.|.+.+..+..+..+++|+.|+++
T Consensus 348 -~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~-------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 348 -MFTGLINLKYLSLSNSFTSLRTLTNETFVSL-------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp -TTTTCTTCCEEECTTCBSCCCEECTTTTGGG-------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred -HhccccCCcEEECCCCchhhhhcchhhhccc-------------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence 2333666666666665432111 0111100 01467888999999998889999999999999999
Q ss_pred CccCCCCC-CCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccc--cCCCccccCCCCCcEEEcCCCcCc
Q 045935 361 NNMLSSKI-PGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLT--DSIPGSLGRLGGLVKLNLTGNKLS 437 (587)
Q Consensus 361 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~--~~~~~~l~~~~~L~~L~L~~~~l~ 437 (587)
+|.+.... +..+.++++|++|++++|.+....+..+..+++|++|++++|.+. +..+..+..+++|++|++++|.+.
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence 99987544 367889999999999999998888889999999999999999886 456788899999999999999999
Q ss_pred cccccccccCCCCceeeccCCccccccc-cccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcc
Q 045935 438 GLVPTSLENLKGLTHLDLSYNKLDVQHN-KLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNK 516 (587)
Q Consensus 438 ~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~ 516 (587)
+..+.++..+++|++|++++|.+..... .+.+.....+.... +|+.|++++|.++...+..|..+++|++|++++|+
T Consensus 494 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS--HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC--CCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 8777889999999999999998763211 11111112234444 99999999999995555679999999999999999
Q ss_pred cccCCCcccCCCCCCceecCCCCcccccCChhhc-CCCCCccccCCCCcceecC
Q 045935 517 FTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKIC-RLSNLLYLSFEENRFAVLG 569 (587)
Q Consensus 517 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~ 569 (587)
+++..+..|.++++|++|++++|.++...+..|. .+++|+.|++++|++.+-.
T Consensus 572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 9977777789999999999999999987777777 7899999999999988753
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-52 Score=452.29 Aligned_cols=546 Identities=22% Similarity=0.223 Sum_probs=346.3
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccc
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQ 81 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (587)
++.++..++ .+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+.+..|.+|.++++|++|++++|.
T Consensus 9 ~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCS-SCCSCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eECCCCCcc-ccccccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 467788887 5777665 79999999999998 5776889999999999999999998888889999999999999999
Q ss_pred cccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcc
Q 045935 82 FTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQ 161 (587)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 161 (587)
++...+..+.++++|++|++++|.+++..+.++.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 98555557999999999999999998777788999999999999999999888888999999999999999976443322
Q ss_pred cCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCcccc---CCCCCcEEEcCCcc
Q 045935 162 LSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELC---NSESLVEINLDGNL 238 (587)
Q Consensus 162 l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 238 (587)
+. +..+++|++|++++|.+++..+..+..+++|+.++++++.+.......+. ..++|+.|++++|.
T Consensus 165 ~~-----------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 165 LD-----------IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp HG-----------GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred hh-----------ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 11 12457888888888888877777777666665555555444321111110 12445555555544
Q ss_pred cccc------------cccccccccccccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeecc
Q 045935 239 LSGT------------IEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYL 305 (587)
Q Consensus 239 ~~~~------------~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 305 (587)
+.+. +..+++++|.+.+..+..+..++ ++.+++++|.+.+..+..+. .+++|+.+++.++...+..
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~ 312 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSI 312 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC--
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhccc
Confidence 3321 33344444444444455555555 66666666665544333332 2555666655544322111
Q ss_pred cccccchhhhHHHHhhc--ccccccccceEEccCCcccccCCCCcCCCCcccEEEccCc---------------------
Q 045935 306 PWEIGNAIALERLVKIH--DLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNN--------------------- 362 (587)
Q Consensus 306 ~~~~~~~~~l~~l~~~~--~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~--------------------- 362 (587)
.. ..+..+. .......++.+++++|.+.+..+..+..+++|+.|++++|
T Consensus 313 ~~--------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~ 384 (680)
T 1ziw_A 313 SL--------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384 (680)
T ss_dssp ------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCC
T ss_pred cc--------ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCc
Confidence 00 0000000 1112234444555555555555555555555555555554
Q ss_pred -------cCCCCCCCCCcCCCCCCeEecCCCcCCCCCC-cCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCC
Q 045935 363 -------MLSSKIPGSRSRLTNLTILDLSRNELAGSIP-PEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGN 434 (587)
Q Consensus 363 -------~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~ 434 (587)
.+....+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 385 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS
T ss_pred eEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc
Confidence 4444444445555555555555555543222 34555555555555555555555555555555666666555
Q ss_pred cCc--cccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCc--------hhccCC
Q 045935 435 KLS--GLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLP--------RSLSNL 504 (587)
Q Consensus 435 ~l~--~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------~~~~~~ 504 (587)
.+. +..|..+..+++|++|++++|.+. +..+..+.... +|+.|++++|.+++..+ ..|..+
T Consensus 465 ~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-------~i~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l 535 (680)
T 1ziw_A 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIA-------NINDDMLEGLE--KLEILDLQHNNLARLWKHANPGGPIYFLKGL 535 (680)
T ss_dssp CCBCTTCSSCTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCT--TCCEEECCSSCCGGGGSTTSTTSCCCTTTTC
T ss_pred cccccccCCcccccCCCCCEEECCCCCCC-------cCChhhhcccc--ccCEEeCCCCCccccchhhccCCcchhhcCC
Confidence 543 234455666666666666665443 22333344444 67777777777664211 235667
Q ss_pred CCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCchh-hhHHHH
Q 045935 505 SYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLD-YVKYWK 580 (587)
Q Consensus 505 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~~~~l~ 580 (587)
++|++|++++|+++...+..|.++++|++|++++|.++...+..|..+++|++|++++|+++.++.+.+. .++.|+
T Consensus 536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 612 (680)
T 1ziw_A 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence 7777777777777744444577777777777777777765556677777777777777777777776665 455444
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-51 Score=440.27 Aligned_cols=509 Identities=19% Similarity=0.166 Sum_probs=377.8
Q ss_pred cCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccc
Q 045935 4 LSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFT 83 (587)
Q Consensus 4 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (587)
.++..++ .+|..+.. ++++|++++|.+. .++...|.++++|++|++++|.+....|.+|.++++|++|++++|.++
T Consensus 19 c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 19 CENLGLN-EIPGTLPN--STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp CTTSCCS-SCCTTSCT--TCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred CCCCCcc-cCcCCCCC--cCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc
Confidence 3444444 45555543 6777777777777 454467777777777777777777667777777777777777777777
Q ss_pred cCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccC
Q 045935 84 GQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLS 163 (587)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~ 163 (587)
+..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++.....+..+++|++|++++|.+.+..
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----- 169 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS----- 169 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC-----
T ss_pred ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC-----
Confidence 666777777777777777777777655666777777777777777777544344445777777777777765222
Q ss_pred CccccCCCCcccccCCCCC--EEeCCCCccCCCCCccccCCCcccEEecCCCccc-------------------------
Q 045935 164 ELPLSGPLPSWFGKWNQLD--SLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVS------------------------- 216 (587)
Q Consensus 164 ~l~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------------------------- 216 (587)
+..+..+++|+ .|++++|.+++..+..+. ...|+++++++|...
T Consensus 170 --------~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 170 --------KEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp --------HHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC
T ss_pred --------hhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccc
Confidence 23355566676 677777777755554433 356777777665411
Q ss_pred -cccCccccCCC--CCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccc
Q 045935 217 -GSIPRELCNSE--SLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLI 292 (587)
Q Consensus 217 -~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~ 292 (587)
...+..+..+. +++.|++++|.+. +..+..+..++ ++.+++++|.++ .+|..+.. +++|+
T Consensus 241 ~~i~~~~~~~l~~~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~ 304 (606)
T 3t6q_A 241 EDISPAVFEGLCEMSVESINLQKHYFF--------------NISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLK 304 (606)
T ss_dssp CCCCGGGGGGGGGSEEEEEECTTCCCS--------------SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCC
T ss_pred cccChhHhchhhcCceeEEEeecCccC--------------ccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCC
Confidence 00111111111 4555555555443 34555677777 888888888877 56655443 78888
Q ss_pred eecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCC-CCcCCCCcccEEEccCccCCCCC--C
Q 045935 293 EFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIP-EDLGNCTVVVYLLLSNNMLSSKI--P 369 (587)
Q Consensus 293 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~ 369 (587)
+|++.+|.+.+..+..+..++.+ +.+++++|.+.+..+ ..+..+++|+.|++++|.+.... +
T Consensus 305 ~L~l~~n~l~~~~~~~~~~l~~L---------------~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 305 KLVLSANKFENLCQISASNFPSL---------------THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp EEECTTCCCSBGGGGCGGGCTTC---------------SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred EEECccCCcCcCchhhhhccCcC---------------CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 88888888776666555555444 444888888875444 45889999999999999988665 6
Q ss_pred CCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCc-cccCCCCCcEEEcCCCcCccccccccccCC
Q 045935 370 GSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPG-SLGRLGGLVKLNLTGNKLSGLVPTSLENLK 448 (587)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 448 (587)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..++
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 449 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence 6788999999999999999878888999999999999999999866544 478899999999999999888888899999
Q ss_pred CCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCC
Q 045935 449 GLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNL 528 (587)
Q Consensus 449 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l 528 (587)
+|++|++++|.+..... ..+..+.... +|+.|++++|.+++..+..|..+++|++|++++|++++..|..+.++
T Consensus 450 ~L~~L~L~~n~l~~~~~----~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNI----QKTNSLQTLG--RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TCCEEECTTCBCGGGEE----CSSCGGGGCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred CCCEEECCCCCCCcccc----ccchhhccCC--CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 99999999987642100 1112334444 99999999999998888999999999999999999998899999999
Q ss_pred CCCceecCCCCcccccCChhhcCCCCCccccCCCCcceec
Q 045935 529 IQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVL 568 (587)
Q Consensus 529 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 568 (587)
+.| +|++++|.+++..|..|..+++|+.|++++|++.+-
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 999 999999999988888899999999999999999874
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.5e-51 Score=435.48 Aligned_cols=515 Identities=20% Similarity=0.169 Sum_probs=425.1
Q ss_pred CCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecC
Q 045935 23 LPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSP 102 (587)
Q Consensus 23 L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (587)
-++++.++..+. ++| ..+. +.+++|++++|.+.+..+.+|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 14 ~~~~~c~~~~l~-~iP-~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIP-GTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCS-SCC-TTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCcc-cCc-CCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 457888888888 888 3333 479999999999998889999999999999999999998888999999999999999
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCC
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLD 182 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~ 182 (587)
+|.+++..+.++..+++|++|++++|.+++..+..++.+++|++|++++|.+.+.. .+. +..+++|+
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~------------~~~-~~~l~~L~ 156 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK------------LPK-GFPTEKLK 156 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC------------CCT-TCCCTTCC
T ss_pred CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC------------ccc-ccCCcccC
Confidence 99999888999999999999999999999776788999999999999999986321 122 33488999
Q ss_pred EEeCCCCccCCCCCccccCCCccc--EEecCCCccccccCccccCCCCCcEEEcCCccccc----ccc-----ccc----
Q 045935 183 SLLLSSNQFVGRIPPEIGSCSMLK--YISLSSNFVSGSIPRELCNSESLVEINLDGNLLSG----TIE-----DLV---- 247 (587)
Q Consensus 183 ~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~-----~l~---- 247 (587)
+|++++|.+++..+..++.+++|+ .|++++|.+++..+..+. ..+|+.|+++++.... .+. .+.
T Consensus 157 ~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~ 235 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235 (606)
T ss_dssp EEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCC
T ss_pred EEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhh
Confidence 999999999977788899999999 999999999977766654 4689999999886211 000 000
Q ss_pred --ccccccccccCcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccc
Q 045935 248 --LGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLS 325 (587)
Q Consensus 248 --l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 325 (587)
+....+.......+....++.+++++|.+.+ ++...+..+++|+++++++|.+. .+|..+..++.
T Consensus 236 ~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~----------- 302 (606)
T 3t6q_A 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST----------- 302 (606)
T ss_dssp TTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTT-----------
T ss_pred ccccccccChhHhchhhcCceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC-CCChhhccccc-----------
Confidence 0111122222222233348999999999985 44444556999999999999887 44555555444
Q ss_pred cccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCC-CCCCCcCCCCCCeEecCCCcCCCCC--CcCccCCCCC
Q 045935 326 FIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSK-IPGSRSRLTNLTILDLSRNELAGSI--PPEFGDSLKL 402 (587)
Q Consensus 326 ~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~~~~L 402 (587)
++.+++++|.+.+..+..+..+++|+.|++++|.+... .+..+..+++|++|++++|.+.+.. +..+..+++|
T Consensus 303 ----L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 378 (606)
T 3t6q_A 303 ----LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378 (606)
T ss_dssp ----CCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC
T ss_pred ----CCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC
Confidence 45559999999988888899999999999999998744 4456889999999999999998654 6788999999
Q ss_pred cEEEccCcccccCCCccccCCCCCcEEEcCCCcCcccccc-ccccCCCCceeeccCCccccccccccccchhhhhhcccc
Q 045935 403 QGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPT-SLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAW 481 (587)
Q Consensus 403 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~ 481 (587)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+. +..+..+....
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~-- 449 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-------ISSEQLFDGLP-- 449 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB-------TTCTTTTTTCT--
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC-------CcCHHHHhCCC--
Confidence 9999999999988888999999999999999998866554 4889999999999997764 33344444444
Q ss_pred cccEEecccccCccC---CchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccc
Q 045935 482 NIATLNLSNNFFDGG---LPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYL 558 (587)
Q Consensus 482 ~L~~L~L~~~~l~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 558 (587)
+|++|++++|.+.+. .+..+..+++|++|++++|++++..|..+.++++|++|++++|.+++..|..|.+++.| .|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 999999999999752 33678999999999999999998889999999999999999999999999999999999 99
Q ss_pred cCCCCcceecCcCchhhhHHHHHH
Q 045935 559 SFEENRFAVLGINRLDYVKYWKIF 582 (587)
Q Consensus 559 ~l~~n~i~~~~~~~~~~~~~l~~~ 582 (587)
++++|+++.++++.++.++.|+.+
T Consensus 529 ~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 529 NLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp ECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred ECcCCcccccCHhhcccCCCCCEE
Confidence 999999999999988888877654
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.1e-51 Score=434.44 Aligned_cols=515 Identities=20% Similarity=0.177 Sum_probs=407.4
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccc
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQ 81 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (587)
++.++..++ .+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+.+..|.+|.++++|++|++++|.
T Consensus 16 ~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEccCCCcc-cCCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 456677777 6666555 78999999999998 5665789999999999999999987788889999999999999999
Q ss_pred cccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcc-cCCccccCCCCCceeecccccCCCCCCc
Q 045935 82 FTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNG-SIPAELGKCENLKSVLLSFNALPGSLPE 160 (587)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 160 (587)
+++..|..+.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 987778899999999999999999987777889999999999999999875 4688899999999999999987654333
Q ss_pred ccCCccccCCCCcccccCCC----CCEEeCCCCccCCCCCccccCCCcccEEecCCCccc-cccCccccCCCCCcEEEcC
Q 045935 161 QLSELPLSGPLPSWFGKWNQ----LDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVS-GSIPRELCNSESLVEINLD 235 (587)
Q Consensus 161 ~l~~l~~~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 235 (587)
. +..+++ ++++++++|.++...+..+... +|++|++++|.++ ...+..+..+++++.+++.
T Consensus 172 ~-------------~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 172 D-------------LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp T-------------THHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred h-------------hhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccc
Confidence 2 333333 4589999999885555545444 8999999999876 4566777888888887775
Q ss_pred Cccccc------------------ccccccc-cccccccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceec
Q 045935 236 GNLLSG------------------TIEDLVL-GNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFS 295 (587)
Q Consensus 236 ~~~~~~------------------~~~~l~l-~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 295 (587)
.+.+.. .+..+.+ ..+.+.+..|. +..++ ++.++++++.+. .++ .+..+++|+.++
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~ 313 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLS 313 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEE
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEE
Confidence 443321 1111222 34455555555 66666 888888888886 444 333478888888
Q ss_pred ccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCC--CCCCCc
Q 045935 296 AASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSK--IPGSRS 373 (587)
Q Consensus 296 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~ 373 (587)
+.+|.+ +.+| .+ . .+.++.++++.|...... .+..+++|+.|++++|.+... .+..+.
T Consensus 314 l~~n~l-~~lp-~~-~---------------l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 314 IIRCQL-KQFP-TL-D---------------LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp EESCCC-SSCC-CC-C---------------CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred cccccC-cccc-cC-C---------------CCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 888877 3333 22 3 344566699988554333 567889999999999988755 256677
Q ss_pred CCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCC-ccccCCCCCcEEEcCCCcCccccccccccCCCCce
Q 045935 374 RLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIP-GSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTH 452 (587)
Q Consensus 374 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 452 (587)
.+++|++|++++|.+. ..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 374 ~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 8899999999999887 456788899999999999999987766 67888999999999999998888888999999999
Q ss_pred eeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCc
Q 045935 453 LDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLE 532 (587)
Q Consensus 453 L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 532 (587)
|++++|.+... ..+..+.... +|+.|++++|.+++..+..|..+++|++|++++|++++..|..+.++++|+
T Consensus 453 L~l~~n~l~~~------~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 453 LKMAGNSFKDN------TLSNVFANTT--NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp EECTTCEEGGG------EECSCCTTCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred EECCCCcCCCc------chHHhhccCC--CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 99999776410 1334444444 999999999999988888899999999999999999988889999999999
Q ss_pred eecCCCCcccccCChhhcCCC-CCccccCCCCcceec
Q 045935 533 YLDVSKNMLCGQIPKKICRLS-NLLYLSFEENRFAVL 568 (587)
Q Consensus 533 ~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~~~ 568 (587)
+|++++|+++ .+|..+..++ +|++|++++|++.+-
T Consensus 525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999999998 5676688887 599999999998863
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-49 Score=420.78 Aligned_cols=482 Identities=19% Similarity=0.120 Sum_probs=393.9
Q ss_pred CcccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEeccc
Q 045935 1 FRYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGIN 80 (587)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 80 (587)
+|+|++|.|++..+.+|.++++|++|++++|.+. .++...|.++++|++|++++|.+.+..|.+|.++++|++|++++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 4789999999999999999999999999999998 565588999999999999999999888999999999999999999
Q ss_pred ccccCCChhhhcCCCccEEecCCCCCcc-CCccccccCCCCcEEEeccccCcccCCccccCCCCCc----eeecccccCC
Q 045935 81 QFTGQLPPEIGELSLLEIFSSPSCSITG-PLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLK----SVLLSFNALP 155 (587)
Q Consensus 81 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~L~~n~~~ 155 (587)
.+++..+..+.++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..++.+.+|+ +|++++|.+.
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc
Confidence 9987666889999999999999999986 5689999999999999999999987777777766654 8999999976
Q ss_pred CCCCcccCCccccCCCCcccccCCCCCEEeCCCCccC-CCCCccccCCCcccEEec------------------------
Q 045935 156 GSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFV-GRIPPEIGSCSMLKYISL------------------------ 210 (587)
Q Consensus 156 ~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l------------------------ 210 (587)
+..+ ......+|++|++++|.++ ...+..+.+++.++.+.+
T Consensus 195 ~~~~--------------~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 195 FIQD--------------QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp EECT--------------TTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred eeCc--------------ccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 3222 2222337788888877664 233444555555555444
Q ss_pred ---------CCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCcccc
Q 045935 211 ---------SSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGII 280 (587)
Q Consensus 211 ---------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 280 (587)
..+.+.+..+. +..+++|+.|+++++.+. .+| .+..++ ++.+++++|.+ +.+
T Consensus 261 l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~---------------~l~-~l~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK---------------YLE-DVPKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC---------------CCC-CCCTTCCCSEEEEESCCC-SSC
T ss_pred ccHhheeccccccccccccc-cccCCCCCEEEecCccch---------------hhh-hccccccCCEEEcccccC-ccc
Confidence 44455555555 677788888888887765 455 667777 99999999999 577
Q ss_pred chhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCccccc--CCCCcCCCCcccEEE
Q 045935 281 PLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCP--IPEDLGNCTVVVYLL 358 (587)
Q Consensus 281 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~--~~~~~~~~~~L~~L~ 358 (587)
|. + .++.|+.+++.+|...+.. .+.. .+.++.+++++|.+.+. .+..+..+++|+.|+
T Consensus 323 p~-~--~l~~L~~L~l~~n~~~~~~--~~~~---------------l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 323 PT-L--DLPFLKSLTLTMNKGSISF--KKVA---------------LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CC-C--CCSSCCEEEEESCSSCEEC--CCCC---------------CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred cc-C--CCCccceeeccCCcCccch--hhcc---------------CCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence 73 3 5899999999998544322 2222 34556669999998855 367788899999999
Q ss_pred ccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCC-cCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCc
Q 045935 359 LSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIP-PEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLS 437 (587)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~ 437 (587)
+++|.+... +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.
T Consensus 383 L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 383 LSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp CCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence 999998754 4778889999999999999887766 67889999999999999999888888999999999999999988
Q ss_pred c-ccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcc
Q 045935 438 G-LVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNK 516 (587)
Q Consensus 438 ~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~ 516 (587)
+ ..+..+..+++|++|++++|.+. +..+..+.... +|+.|++++|++++..|..|..+++|++|++++|+
T Consensus 462 ~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 462 DNTLSNVFANTTNLTFLDLSKCQLE-------QISWGVFDTLH--RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCC-------EECTTTTTTCT--TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CcchHHhhccCCCCCEEECCCCcCC-------ccChhhhcccc--cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 6 36788999999999999997664 33444555555 99999999999998889999999999999999999
Q ss_pred cccCCCcccCCCC-CCceecCCCCcccccCC
Q 045935 517 FTGEIPPELGNLI-QLEYLDVSKNMLCGQIP 546 (587)
Q Consensus 517 ~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~ 546 (587)
++ .+|..+..++ +|++|++++|++....+
T Consensus 533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 533 IE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred Cc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99 6677788887 59999999999975433
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-47 Score=419.79 Aligned_cols=512 Identities=22% Similarity=0.247 Sum_probs=316.6
Q ss_pred cCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCC-CCCcCCCCCCcEEEeccccc
Q 045935 4 LSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSF-PPEIGNLKNLTHFFLGINQF 82 (587)
Q Consensus 4 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~ 82 (587)
.++++++ .+|. -.+++++|+|++|.+. .++...|.++++|++|++++|.....+ |.+|.++++|++|++++|.+
T Consensus 11 cs~~~L~-~vP~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 11 YRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp ESCCCSS-CCCS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred ccCCCCC-CCCC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 3444555 3333 3355666666666665 333355666666666666666433222 55566666666666666666
Q ss_pred ccCCChhhhcCCCccEEecCCCCCccCCccc--cccCCCCcEEEeccccCcccCC-ccccCCCCCceeecccccCCCCCC
Q 045935 83 TGQLPPEIGELSLLEIFSSPSCSITGPLPEE--LSNYGSSGILNLGSTQLNGSIP-AELGKCENLKSVLLSFNALPGSLP 159 (587)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~ 159 (587)
.+..|..+.++++|++|++++|.+++..+.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 6555566666666666666666665544333 5666666666666666654433 345666666666666666543322
Q ss_pred cccCCccccCCCCcccccC--CCCCEEeCCCCccCCCCCccccCCCc------ccEEecCCCccccccCccccCC---CC
Q 045935 160 EQLSELPLSGPLPSWFGKW--NQLDSLLLSSNQFVGRIPPEIGSCSM------LKYISLSSNFVSGSIPRELCNS---ES 228 (587)
Q Consensus 160 ~~l~~l~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~~~~~---~~ 228 (587)
. .+..+ ++|+.|++++|.+.+..+..+..+++ |++|++++|.+++..+..+... ..
T Consensus 166 ~-------------~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 166 H-------------ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp G-------------GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred H-------------HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 2 22222 45566666666555544444444443 6666666665554444444321 34
Q ss_pred CcEEEcCCcccc---------------------cccccccccccccccccCcccCCCC-ccEEeccCCCCccccchhhhh
Q 045935 229 LVEINLDGNLLS---------------------GTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWK 286 (587)
Q Consensus 229 L~~L~l~~~~~~---------------------~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~ 286 (587)
++.+.++.+... ..+..+++++|.+.+..+..+..++ ++.|++++|.+.+..+.. +.
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~ 311 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FY 311 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-TT
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH-hc
Confidence 445554422111 1122233333334445556666666 777777777776544433 33
Q ss_pred cCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCC
Q 045935 287 NSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSS 366 (587)
Q Consensus 287 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~ 366 (587)
.+++|++|++++|.+.+..+..+..++.++ .++++.|.+....+..|..+++|+.|++++|.+..
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---------------~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVA---------------YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSCSSCTTCC---------------EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCCEEECCCCCCCccCHHHhcCCCCCC---------------EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 477777777777776655555555544443 33777777776666667777777777777777653
Q ss_pred CCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCC-ccccCCCCCcEEEcCCCcCcccccc-cc
Q 045935 367 KIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIP-GSLGRLGGLVKLNLTGNKLSGLVPT-SL 444 (587)
Q Consensus 367 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~L~~~~l~~~~~~-~l 444 (587)
. ..+++|+.+++++|.+. .+|.. ..+++.|++++|.+.+... ..+..+++|++|++++|.+.+..+. .+
T Consensus 377 i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 377 I-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp C-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred c-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 2 22567777777777776 33332 4567788888887765422 2245788999999999988754333 45
Q ss_pred ccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcc
Q 045935 445 ENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPE 524 (587)
Q Consensus 445 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 524 (587)
..+++|++|++++|.+..... .+..+..+.... +|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~--~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWE--TELCWDVFEGLS--HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCC--SCCCSSCSSCBC--CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred ccCCccccccCCCCccccccc--cccchhhhcCcc--cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence 668899999999987752211 122223344444 8999999999999888888999999999999999998666665
Q ss_pred cCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCccee
Q 045935 525 LGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAV 567 (587)
Q Consensus 525 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 567 (587)
+. ++|+.|++++|.+++..|..| ++|+.+++++|++.+
T Consensus 524 ~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 524 LP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp CC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred hh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence 55 889999999999998877765 478899999999876
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-47 Score=418.81 Aligned_cols=502 Identities=21% Similarity=0.174 Sum_probs=396.2
Q ss_pred CEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCC-ChhhhcCCCccEEecC
Q 045935 24 PNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQL-PPEIGELSLLEIFSSP 102 (587)
Q Consensus 24 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 102 (587)
+..+.++++++ .+| . -.+++++|+|++|.+.+..+..|.++++|++|++++|.....+ |..+.++++|++|+++
T Consensus 7 ~~~dcs~~~L~-~vP-~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVP-Q---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCC-S---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCC-C---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 35677888888 899 3 4589999999999999888999999999999999999554444 7889999999999999
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCcccCCcc--ccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCC
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAE--LGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQ 180 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 180 (587)
+|.+++..|.++.++++|++|++++|.+++..+.. ++++++|++|++++|.+.+.. .+..|+++++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~------------~~~~~~~L~~ 149 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY------------LHPSFGKLNS 149 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC------------CCGGGGTCSS
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc------------cchhHhhCCC
Confidence 99999988999999999999999999998766554 899999999999999976332 2345788999
Q ss_pred CCEEeCCCCccCCCCCccccCC--CcccEEecCCCccccccCccccCCCC------CcEEEcCCccccccccc-------
Q 045935 181 LDSLLLSSNQFVGRIPPEIGSC--SMLKYISLSSNFVSGSIPRELCNSES------LVEINLDGNLLSGTIED------- 245 (587)
Q Consensus 181 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~------- 245 (587)
|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+....+.
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 9999999999998888888877 89999999999999888877776665 99999999976643222
Q ss_pred ------cccc---------ccccccccCcccCCC--C-ccEEeccCCCCccccchhhhhcCCccceecccccceeecccc
Q 045935 246 ------LVLG---------NNHIHGSIPEYLSEL--P-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPW 307 (587)
Q Consensus 246 ------l~l~---------~~~~~~~~~~~~~~~--~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 307 (587)
+.+. .+.+.......+..+ + ++.|++++|.+.+..+.. +..+++|+.|++.+|.+.+..+.
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTT
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChH
Confidence 1111 122222333344443 3 888888888887554443 44488888888888888877666
Q ss_pred cccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCc
Q 045935 308 EIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNE 387 (587)
Q Consensus 308 ~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 387 (587)
.+..++.+ +.+++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.
T Consensus 309 ~~~~l~~L---------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 309 AFYGLDNL---------------QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTTTCSSC---------------CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred HhcCCCCC---------------CEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 66555444 444888888887778888888889999999888887777778888889999998888
Q ss_pred CCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccc-cccccCCCCceeeccCCcccccccc
Q 045935 388 LAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVP-TSLENLKGLTHLDLSYNKLDVQHNK 466 (587)
Q Consensus 388 i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~ 466 (587)
++.. ..+++|+.|++++|+++. .+.. ..+++.|++++|.+.+... ..+..+++|++|++++|.+......
T Consensus 374 l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 444 (844)
T 3j0a_A 374 LTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444 (844)
T ss_dssp SCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS
T ss_pred CCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccc
Confidence 8732 237788899998888873 3322 4678999999998875422 2356789999999999876521100
Q ss_pred ccccchhhhhhcccccccEEecccccCc-----cCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcc
Q 045935 467 LSGPLNELFTNSVAWNIATLNLSNNFFD-----GGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNML 541 (587)
Q Consensus 467 ~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 541 (587)
..+.. .++|+.|++++|.++ +..+..|..+++|++|+|++|.+++..+..+.++++|++|++++|.+
T Consensus 445 ------~~~~~--~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 445 ------QTPSE--NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp ------SSSCS--CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred ------ccccc--CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence 01111 228999999999986 34456788999999999999999988888899999999999999999
Q ss_pred cccCChhhcCCCCCccccCCCCcceecCcCchhhhH
Q 045935 542 CGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVK 577 (587)
Q Consensus 542 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 577 (587)
+...+..+. ++|+.|++++|++++..++.|..++
T Consensus 517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 517 TVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp SSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred CccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence 976666665 8999999999999999888876544
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-46 Score=397.31 Aligned_cols=501 Identities=20% Similarity=0.160 Sum_probs=362.6
Q ss_pred ccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhh
Q 045935 12 TVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIG 91 (587)
Q Consensus 12 ~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 91 (587)
.+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+.+..+.+|.++++|++|++++|.+++..+..+.
T Consensus 21 ~ip~~l~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 21 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SCCSSSC--SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCcc--ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 3444333 46777888887777 45546777778888888887777766666777778888888887777766667777
Q ss_pred cCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcc-cCCccccCCCCCceeecccccCCCCCCcccCCccccCC
Q 045935 92 ELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNG-SIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGP 170 (587)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~ 170 (587)
++++|++|++++|+++...+..++.+++|++|++++|.++. ..|..++++++|++|++++|.+.+..+
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~----------- 166 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----------- 166 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG-----------
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH-----------
Confidence 77778888887777776555567777777777777777765 356777777777777777777653222
Q ss_pred CCcccccCCCC----CEEeCCCCccCCCCCccccCCCcccEEecCCCccc-cccCccccCCCCCcEEEcCCccccccccc
Q 045935 171 LPSWFGKWNQL----DSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVS-GSIPRELCNSESLVEINLDGNLLSGTIED 245 (587)
Q Consensus 171 ~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 245 (587)
..+..+++| +.+++++|.+++..+..+... +|++|++++|... ...+..+..++.++...+....+...
T Consensus 167 --~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--- 240 (570)
T 2z63_A 167 --TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--- 240 (570)
T ss_dssp --GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC---
T ss_pred --HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc---
Confidence 233444455 677777777775555555544 6777777776432 12344455556665554433222110
Q ss_pred ccccccccccccCcccC---CCCccEEeccCC-CCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhh
Q 045935 246 LVLGNNHIHGSIPEYLS---ELPLVVLDLDSN-NFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKI 321 (587)
Q Consensus 246 l~l~~~~~~~~~~~~~~---~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~ 321 (587)
..+.......+. .+.++.+++.++ .+.+..+..+. .+++|+.+++.++.+.+ ++..+..+
T Consensus 241 -----~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~-l~~~~~~~--------- 304 (570)
T 2z63_A 241 -----GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIER-VKDFSYNF--------- 304 (570)
T ss_dssp -----SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEECS-CCBCCSCC---------
T ss_pred -----hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccchh-hhhhhccC---------
Confidence 001111112222 233677777776 55555554443 48899999999988763 34333332
Q ss_pred cccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCC--CcCccCC
Q 045935 322 HDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSI--PPEFGDS 399 (587)
Q Consensus 322 ~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~~ 399 (587)
.++.+++++|.+. .+|. ..++.|+.|++++|.+....+. ..+++|++|++++|.+.... +..+..+
T Consensus 305 -------~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 305 -------GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp -------CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred -------CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccccc
Confidence 4556699999988 4444 4678999999999998755443 67899999999999987543 5678889
Q ss_pred CCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccc-cccccCCCCceeeccCCccccccccccccchhhhhhc
Q 045935 400 LKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVP-TSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNS 478 (587)
Q Consensus 400 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~ 478 (587)
++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. +..+..+...
T Consensus 373 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l 444 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-------VAFNGIFNGL 444 (570)
T ss_dssp SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE-------ECCTTTTTTC
T ss_pred CccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc-------ccchhhhhcC
Confidence 9999999999999865444 8899999999999999886655 47889999999999997654 2344445555
Q ss_pred ccccccEEecccccCc-cCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCcc
Q 045935 479 VAWNIATLNLSNNFFD-GGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLY 557 (587)
Q Consensus 479 ~~~~L~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 557 (587)
. +|+.|++++|.+. +..|..+..+++|++|++++|++++..|..+.++++|++|++++|.+++..+..|.++++|++
T Consensus 445 ~--~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 445 S--SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp T--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred C--cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 5 9999999999987 468889999999999999999999888999999999999999999999888888999999999
Q ss_pred ccCCCCcceecCc
Q 045935 558 LSFEENRFAVLGI 570 (587)
Q Consensus 558 L~l~~n~i~~~~~ 570 (587)
|++++|++++-..
T Consensus 523 L~l~~N~~~~~~~ 535 (570)
T 2z63_A 523 IWLHTNPWDCSCP 535 (570)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEecCCcccCCCc
Confidence 9999999987643
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-45 Score=386.75 Aligned_cols=471 Identities=17% Similarity=0.098 Sum_probs=273.4
Q ss_pred CCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEe
Q 045935 46 QSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNL 125 (587)
Q Consensus 46 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 125 (587)
++|++|++++|.+.+..+.+|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+.+++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 34444444444444334444444444444444444444333344444444444444444444443334444444444444
Q ss_pred ccccCcc-cCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCc
Q 045935 126 GSTQLNG-SIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSM 204 (587)
Q Consensus 126 ~~~~~~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 204 (587)
++|.+++ ..+..++.+++|++|++++|...+.+| +..+.++++|++|++++|.+++..|..+..+++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~------------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR------------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccC------------HhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 4444443 123344444444444444444211100 122334444444444444444444444444445
Q ss_pred ccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCc-ccCCCC-ccEEeccCCCCccccch
Q 045935 205 LKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPE-YLSELP-LVVLDLDSNNFTGIIPL 282 (587)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~-~~~~~~-L~~L~l~~~~~~~~~~~ 282 (587)
|++|++++|.+.......+..+++|++|++++|.+.+.. ..+. .....+ ++.++++++.+.+..+.
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ------------FSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC------------CCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCcccccc------------ccccchhhhhhcccceeccccccchhHHH
Confidence 555555444443111111223444555555444443110 0000 111122 55555555554433222
Q ss_pred hh---hhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccC-----CCCcCCCCcc
Q 045935 283 SL---WKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPI-----PEDLGNCTVV 354 (587)
Q Consensus 283 ~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~-----~~~~~~~~~L 354 (587)
.+ ...++.++.+++.+|.+.+....... ..........++.+++..+.+.... +..+...++|
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~---------~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L 312 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPS---------ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCC---------TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTC
T ss_pred HHHHHhhhhcccccccccccccccccccccc---------chhhhhhhcccccccccccccchhhhcccchhhhhhcccc
Confidence 22 12355666666666655443211000 0111122334455566665554211 1112234679
Q ss_pred cEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCC---cCccCCCCCcEEEccCcccccCCC--ccccCCCCCcEE
Q 045935 355 VYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIP---PEFGDSLKLQGLFLGNNQLTDSIP--GSLGRLGGLVKL 429 (587)
Q Consensus 355 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~--~~l~~~~~L~~L 429 (587)
+.|++++|.+.......+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|
T Consensus 313 ~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp CEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred eEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence 999999999874433333578999999999999875442 346788999999999999875432 457889999999
Q ss_pred EcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcE
Q 045935 430 NLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTS 509 (587)
Q Consensus 430 ~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 509 (587)
++++|.+. .+|..+..+++|++|++++|.+... .+.. +++|+.|++++|.+++. ...+++|++
T Consensus 393 ~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l----~~~~--------~~~L~~L~Ls~N~l~~~----~~~l~~L~~ 455 (549)
T 2z81_A 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV----KTCI--------PQTLEVLDVSNNNLDSF----SLFLPRLQE 455 (549)
T ss_dssp ECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC----CTTS--------CTTCSEEECCSSCCSCC----CCCCTTCCE
T ss_pred ECCCCCCc-cCChhhcccccccEEECCCCCcccc----cchh--------cCCceEEECCCCChhhh----cccCChhcE
Confidence 99999998 5677888899999999999887521 1111 23899999999999853 257899999
Q ss_pred EEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceec
Q 045935 510 VDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVL 568 (587)
Q Consensus 510 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 568 (587)
|++++|+++ .+|. ...+++|++|++++|.+++..|..|..+++|++|++++|++.+-
T Consensus 456 L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 456 LYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp EECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred EECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 999999998 6665 46789999999999999988888899999999999999998754
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-45 Score=385.53 Aligned_cols=498 Identities=20% Similarity=0.133 Sum_probs=394.1
Q ss_pred CCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecC
Q 045935 23 LPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSP 102 (587)
Q Consensus 23 L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (587)
.++++-++.++. ++|.. + -+++++|++++|.+.+..+.+|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 9 ~~~~~c~~~~l~-~ip~~-l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTEEECCSSCCS-SCCSS-S--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEeCCCCcc-ccCCC-c--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 456777888887 78832 2 3579999999999998888899999999999999999987777889999999999999
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCC
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLD 182 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~ 182 (587)
+|.++...+.++..+++|++|++++|.++...+..++.+++|++|++++|.+.+. .+|..+.++++|+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~------------~lp~~~~~l~~L~ 152 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF------------KLPEYFSNLTNLE 152 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC------------CCCGGGGGCTTCC
T ss_pred CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee------------cChhhhcccCCCC
Confidence 9999988888999999999999999999866666799999999999999987521 3567788899999
Q ss_pred EEeCCCCccCCCCCccccCCCcc----cEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccC
Q 045935 183 SLLLSSNQFVGRIPPEIGSCSML----KYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIP 258 (587)
Q Consensus 183 ~L~l~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~ 258 (587)
+|++++|.+++..+..++.+++| +.+++++|.++...+..+... +|+.|++++|..... ..+
T Consensus 153 ~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~-------------~~~ 218 (570)
T 2z63_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN-------------VMK 218 (570)
T ss_dssp EEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTT-------------HHH
T ss_pred EEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccccccc-------------chh
Confidence 99999999987777788888888 899999999997777777655 899999988743311 122
Q ss_pred cccCCCC-ccEEeccCCCC-----ccccchhhhhcCC--ccceeccccc-ceeecccccccchhhhHHHHhhcccccccc
Q 045935 259 EYLSELP-LVVLDLDSNNF-----TGIIPLSLWKNSK--NLIEFSAASN-LLEGYLPWEIGNAIALERLVKIHDLSFIQH 329 (587)
Q Consensus 259 ~~~~~~~-L~~L~l~~~~~-----~~~~~~~~~~~~~--~L~~l~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 329 (587)
..+..+. ++...+....+ ...++...+..++ .++.+.+..+ .+.+..+..+..++.+
T Consensus 219 ~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L-------------- 284 (570)
T 2z63_A 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV-------------- 284 (570)
T ss_dssp HHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC--------------
T ss_pred hhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc--------------
Confidence 2233333 33222211110 0122222222222 3455555555 4455555555544444
Q ss_pred cceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccC
Q 045935 330 HGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGN 409 (587)
Q Consensus 330 l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~ 409 (587)
+.++++++.+. .+|..+..+ .|+.|++++|.+..... ..+++|++|++++|.+....+. ..+++|++|++++
T Consensus 285 -~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~ 356 (570)
T 2z63_A 285 -SSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356 (570)
T ss_dssp -SEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred -cEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence 55599999988 577788888 99999999999884333 4678999999999998755443 7789999999999
Q ss_pred cccccCC--CccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccch-hhhhhcccccccEE
Q 045935 410 NQLTDSI--PGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLN-ELFTNSVAWNIATL 486 (587)
Q Consensus 410 ~~~~~~~--~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~L~~L 486 (587)
|.+++.. +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.. ..+ ..+.... +|+.|
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~~l~--~L~~L 426 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQ-------MSEFSVFLSLR--NLIYL 426 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEES-------CTTSCTTTTCT--TCCEE
T ss_pred CccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCcccc-------ccchhhhhcCC--CCCEE
Confidence 9987553 5677889999999999999885544 48999999999999987652 111 2333444 99999
Q ss_pred ecccccCccCCchhccCCCCCcEEEccCcccc-cCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcc
Q 045935 487 NLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFT-GEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRF 565 (587)
Q Consensus 487 ~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 565 (587)
++++|.+.+..+..|..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++..|..|..+++|++|++++|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 99999999888999999999999999999997 46889999999999999999999988899999999999999999999
Q ss_pred eecCcCchhhhHHHHHH
Q 045935 566 AVLGINRLDYVKYWKIF 582 (587)
Q Consensus 566 ~~~~~~~~~~~~~l~~~ 582 (587)
+.++.+.|.+++.|+.+
T Consensus 507 ~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp SCCCTTTTTTCTTCCEE
T ss_pred CCCCHHHhhcccCCcEE
Confidence 99999888888777654
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3e-45 Score=389.73 Aligned_cols=362 Identities=21% Similarity=0.289 Sum_probs=210.1
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCccc-----------------CCcccc--CCCCCceeecccccCCCCCCcccC
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLNGS-----------------IPAELG--KCENLKSVLLSFNALPGSLPEQLS 163 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~L~~n~~~~~~~~~l~ 163 (587)
.|++++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-------- 262 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-------- 262 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--------
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC--------
Confidence 345555 667777777777777777777753 666666 7777777777777754
Q ss_pred CccccCCCCcccccCCCCCEEeCCCCc-cCC-CCCccccCC------CcccEEecCCCccccccCc--cccCCCCCcEEE
Q 045935 164 ELPLSGPLPSWFGKWNQLDSLLLSSNQ-FVG-RIPPEIGSC------SMLKYISLSSNFVSGSIPR--ELCNSESLVEIN 233 (587)
Q Consensus 164 ~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~ 233 (587)
+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .+..+++|++|+
T Consensus 263 -----~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 263 -----TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp -----SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEE
T ss_pred -----ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEe
Confidence 3444555666777777777776 665 566656554 77777777777777 6666 677777777777
Q ss_pred cCCcccccccccccccccccccccCcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchh
Q 045935 234 LDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAI 313 (587)
Q Consensus 234 l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 313 (587)
+++|.+.+. +| .+.. +++|+.|++++|.
T Consensus 337 L~~N~l~g~--------------ip-~~~~------------------------l~~L~~L~L~~N~------------- 364 (636)
T 4eco_A 337 CLYNQLEGK--------------LP-AFGS------------------------EIKLASLNLAYNQ------------- 364 (636)
T ss_dssp CCSCCCEEE--------------CC-CCEE------------------------EEEESEEECCSSE-------------
T ss_pred CcCCcCccc--------------hh-hhCC------------------------CCCCCEEECCCCc-------------
Confidence 776655421 11 1222 2233333222222
Q ss_pred hhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCc-ccEEEccCccCCCCCCCCCcCC--CCCCeEecCCCcCCC
Q 045935 314 ALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTV-VVYLLLSNNMLSSKIPGSRSRL--TNLTILDLSRNELAG 390 (587)
Q Consensus 314 ~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~i~~ 390 (587)
+. .+|..+..+++ |+.|++++|.+. ..+..+... ++|++|++++|.+.+
T Consensus 365 --------------------------l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 365 --------------------------IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp --------------------------EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred --------------------------cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 22 22333333444 444444444444 223333222 245555555555544
Q ss_pred CCCcCcc-------CCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCcccccccccc-------CCCCceeecc
Q 045935 391 SIPPEFG-------DSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLEN-------LKGLTHLDLS 456 (587)
Q Consensus 391 ~~~~~~~-------~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~-------~~~L~~L~l~ 456 (587)
..|..+. .+++|++|++++|.++......+..+++|++|++++|.+....+..+.. +++|++|+++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence 4444444 4455666666666555333333444566666666666655222222222 2266666666
Q ss_pred CCccccccccccccchhhhh--hcccccccEEecccccCccCCchhccCCCCCcEEEc------cCcccccCCCcccCCC
Q 045935 457 YNKLDVQHNKLSGPLNELFT--NSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDL------HRNKFTGEIPPELGNL 528 (587)
Q Consensus 457 ~~~i~~~~~~~~~~~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L------~~n~~~~~~~~~l~~l 528 (587)
+|.+. .++..+. ... +|+.|++++|.+++ +|..+..+++|++|++ ++|++.+.+|..+.++
T Consensus 497 ~N~l~--------~lp~~~~~~~l~--~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 497 FNKLT--------KLSDDFRATTLP--YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp SSCCC--------BCCGGGSTTTCT--TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred CCcCC--------ccChhhhhccCC--CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 65543 1222222 222 67777777777764 6667777777777777 4466666777777777
Q ss_pred CCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCch
Q 045935 529 IQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRL 573 (587)
Q Consensus 529 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~ 573 (587)
++|++|++++|.+. .+|..+. ++|++|++++|++..++...+
T Consensus 566 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~ 607 (636)
T 4eco_A 566 PSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYV 607 (636)
T ss_dssp SSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTT
T ss_pred CCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhc
Confidence 88888888888774 5666544 677888888887777765544
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-43 Score=382.98 Aligned_cols=394 Identities=18% Similarity=0.166 Sum_probs=238.4
Q ss_pred cccccCCChhhhcCCCccEEecCCCCCcc-----------------CCccccc--cCCCCcEEEeccccCcccCCccccC
Q 045935 80 NQFTGQLPPEIGELSLLEIFSSPSCSITG-----------------PLPEELS--NYGSSGILNLGSTQLNGSIPAELGK 140 (587)
Q Consensus 80 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~ 140 (587)
|.+++ +|..+.++++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 34443 45555555555555555555554 2455544 5555555555555555555555555
Q ss_pred CCCCceeeccccc-CCC-CCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCc--cccCCCcccEEecCCCccc
Q 045935 141 CENLKSVLLSFNA-LPG-SLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPP--EIGSCSMLKYISLSSNFVS 216 (587)
Q Consensus 141 l~~L~~L~L~~n~-~~~-~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~ 216 (587)
+++|++|++++|. +++ .+|..+..+. ..+..+++|++|++++|.++ .+|. .+.++++|+.|++++|.++
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLA------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHH------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhh------hcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 5555555555555 443 3333222211 01223445555555555555 4454 5555555555555555555
Q ss_pred cccCccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCC--ccEEeccCCCCccccchhhhh-cCCccce
Q 045935 217 GSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP--LVVLDLDSNNFTGIIPLSLWK-NSKNLIE 293 (587)
Q Consensus 217 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~-~~~~L~~ 293 (587)
.+| .+..+++|+.|++++|.+. .+|..+..++ |+.|++++|.+. .+|..+.. ..++|+.
T Consensus 587 -~lp-~~~~L~~L~~L~Ls~N~l~---------------~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 587 -HLE-AFGTNVKLTDLKLDYNQIE---------------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648 (876)
T ss_dssp -BCC-CCCTTSEESEEECCSSCCS---------------CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred -cch-hhcCCCcceEEECcCCccc---------------cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence 444 5555555555555555544 3344444433 555555555555 34432211 0122444
Q ss_pred ecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCc--CCCCcccEEEccCccCCCCCCCC
Q 045935 294 FSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDL--GNCTVVVYLLLSNNMLSSKIPGS 371 (587)
Q Consensus 294 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~ 371 (587)
|++++|.+.+..+. ++..+ ..+++|+.|++++|.+.......
T Consensus 649 L~Ls~N~l~g~ip~------------------------------------l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~ 692 (876)
T 4ecn_A 649 VDFSYNKIGSEGRN------------------------------------ISCSMDDYKGINASTVTLSYNEIQKFPTEL 692 (876)
T ss_dssp EECCSSCTTTTSSS------------------------------------CSSCTTTCCCCCEEEEECCSSCCCSCCHHH
T ss_pred EECcCCcCCCcccc------------------------------------chhhhccccCCCcCEEEccCCcCCccCHHH
Confidence 44444433221110 01111 13357888888888877444444
Q ss_pred CcCCCCCCeEecCCCcCCCCCCcCccC--------CCCCcEEEccCcccccCCCcccc--CCCCCcEEEcCCCcCccccc
Q 045935 372 RSRLTNLTILDLSRNELAGSIPPEFGD--------SLKLQGLFLGNNQLTDSIPGSLG--RLGGLVKLNLTGNKLSGLVP 441 (587)
Q Consensus 372 ~~~~~~L~~L~l~~~~i~~~~~~~~~~--------~~~L~~L~L~~~~~~~~~~~~l~--~~~~L~~L~L~~~~l~~~~~ 441 (587)
+..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.++ .++..+. .+++|+.|++++|.+.+ +|
T Consensus 693 ~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp 769 (876)
T 4ecn_A 693 FATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FP 769 (876)
T ss_dssp HHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred HccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cc
Confidence 456788888888888877 44443332 238888888888887 5666665 78889999999888886 57
Q ss_pred cccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCC
Q 045935 442 TSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEI 521 (587)
Q Consensus 442 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 521 (587)
..+..+++|++|++++|+ ++++|.+.+.+|..|..+++|++|+|++|++. .+
T Consensus 770 ~~l~~L~~L~~L~Ls~N~---------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~I 821 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQR---------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KV 821 (876)
T ss_dssp CGGGGCTTCCEEECCCCB---------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BC
T ss_pred hhhhcCCCCCEEECCCCC---------------------------CcccccccccChHHHhcCCCCCEEECCCCCCC-cc
Confidence 778888888888888853 45667777788888999999999999999995 77
Q ss_pred CcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceec
Q 045935 522 PPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVL 568 (587)
Q Consensus 522 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 568 (587)
|..+. ++|+.|+|++|++....+..+.....+..+.+.+|+...+
T Consensus 822 p~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I 866 (876)
T 4ecn_A 822 DEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866 (876)
T ss_dssp CSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred CHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence 77765 6999999999998876666665555566777777765543
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-43 Score=367.77 Aligned_cols=458 Identities=20% Similarity=0.208 Sum_probs=264.2
Q ss_pred CcccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEeccc
Q 045935 1 FRYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGIN 80 (587)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 80 (587)
+|+++++.++ .+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+.+..|.+|.++++|++|++++|
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 3678888888 5776665 78888888888887 455467888888888888888888666778888888888888888
Q ss_pred ccccCCChhhhcCCCccEEecCCCCCcc-CCccccccCCCCcEEEeccccCcccCCccccCCCCC--ceeecccccC--C
Q 045935 81 QFTGQLPPEIGELSLLEIFSSPSCSITG-PLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENL--KSVLLSFNAL--P 155 (587)
Q Consensus 81 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~L~~n~~--~ 155 (587)
.++ .+|.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 877 45554 78888888888888876 366788888888888888888764 345556666 8888888776 3
Q ss_pred CCCCcccCCccccCCCCcccccCC-CCCEEeCCCCccCCCCC-ccccCCCcccEEecCCCc-------cccccCccccCC
Q 045935 156 GSLPEQLSELPLSGPLPSWFGKWN-QLDSLLLSSNQFVGRIP-PEIGSCSMLKYISLSSNF-------VSGSIPRELCNS 226 (587)
Q Consensus 156 ~~~~~~l~~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~ 226 (587)
+..|. .+..+. +...+++++|.+.+..+ ..+.++++|+.+++++|. +.+..+ .+..+
T Consensus 154 ~~~~~-------------~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l 219 (520)
T 2z7x_B 154 KEDPE-------------GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTN 219 (520)
T ss_dssp SCCTT-------------TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGC
T ss_pred ccccc-------------cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccc
Confidence 33332 222222 23345566666543322 345566777777776664 333333 44555
Q ss_pred CCCcEEEcCCcccccccccccccccccccccCcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeeccc
Q 045935 227 ESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLP 306 (587)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 306 (587)
++|+.|+++++.+.+.. +. .++... ..++|+++++.+|.+.+.+|
T Consensus 220 ~~L~~L~l~~~~l~~~~--------------------------------~~-~~~~~~--~~~~L~~L~l~~n~l~~~~p 264 (520)
T 2z7x_B 220 PKLSNLTLNNIETTWNS--------------------------------FI-RILQLV--WHTTVWYFSISNVKLQGQLD 264 (520)
T ss_dssp TTCCEEEEEEEEEEHHH--------------------------------HH-HHHHHH--HTSSCSEEEEEEEEEESCCC
T ss_pred cchhhccccccccCHHH--------------------------------HH-HHHHHh--hhCcccEEEeecccccCccc
Confidence 55555555554433110 00 000000 12355555555554444333
Q ss_pred ccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCC---CCCCeEec
Q 045935 307 WEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRL---TNLTILDL 383 (587)
Q Consensus 307 ~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l 383 (587)
..+... ....++.|+.+++++|.+ ......+..+ .+|+.|++
T Consensus 265 ~~~~~~----------------------------------~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 265 FRDFDY----------------------------------SGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp CCCCCC----------------------------------CSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEE
T ss_pred cchhhc----------------------------------ccccCceeEeccccccce-ecchhhhhcccccCceeEEEc
Confidence 322000 004455555555555554 1111111111 34555555
Q ss_pred CCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCcc--ccccccccCCCCceeeccCCccc
Q 045935 384 SRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSG--LVPTSLENLKGLTHLDLSYNKLD 461 (587)
Q Consensus 384 ~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~l~~~~i~ 461 (587)
++|.+.... .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.
T Consensus 310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 555544221 11345555555555555555455555555555555555555553 22334555555555555554443
Q ss_pred cccccccccchh-hhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCc
Q 045935 462 VQHNKLSGPLNE-LFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNM 540 (587)
Q Consensus 462 ~~~~~~~~~~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 540 (587)
. .++. .+.... +|+.|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|.
T Consensus 388 ~-------~l~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 388 Y-------DEKKGDCSWTK--SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp C-------CGGGCSCCCCT--TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred c-------ccccchhccCc--cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence 1 0111 111112 566666666666544444433 56777777777776 556656667777777777777
Q ss_pred ccccCCh-hhcCCCCCccccCCCCccee
Q 045935 541 LCGQIPK-KICRLSNLLYLSFEENRFAV 567 (587)
Q Consensus 541 l~~~~~~-~l~~l~~L~~L~l~~n~i~~ 567 (587)
++. +|. .|..+++|++|++++|++.+
T Consensus 456 l~~-l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 456 LKS-VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCc-cCHHHhccCCcccEEECcCCCCcc
Confidence 763 443 36667777777777777665
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.6e-43 Score=367.15 Aligned_cols=476 Identities=18% Similarity=0.171 Sum_probs=374.2
Q ss_pred CCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEe
Q 045935 46 QSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNL 125 (587)
Q Consensus 46 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 125 (587)
+...+.+.+++.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|++++..+.++..+++|++|++
T Consensus 5 ~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp CTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 33444567777776 6666554 79999999999999887889999999999999999999888899999999999999
Q ss_pred ccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCc-cCCCCCccccCCCc
Q 045935 126 GSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQ-FVGRIPPEIGSCSM 204 (587)
Q Consensus 126 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~ 204 (587)
++|.+++..+..++.+++|++|++++|.+.+. ..+..+.++++|++|++++|. +....+..+.++++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCccccc------------chhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence 99999977777799999999999999997632 234567889999999999998 44344467999999
Q ss_pred ccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCccc-CCCC-ccEEeccCCCCcccc--
Q 045935 205 LKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYL-SELP-LVVLDLDSNNFTGII-- 280 (587)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~~~-- 280 (587)
|++|++++|.+++..|..+..+++|++|++++|.+. ..+..+ ..++ ++.+++++|.+.+..
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~---------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA---------------FLLEIFADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST---------------THHHHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCccc---------------ccchhhHhhcccccEEEccCCcccccccc
Confidence 999999999999889999999999999999998765 333333 3456 999999999988632
Q ss_pred chhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccC------CCCcCCCCcc
Q 045935 281 PLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPI------PEDLGNCTVV 354 (587)
Q Consensus 281 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~------~~~~~~~~~L 354 (587)
+......++.|+.+++.++.+.+..+..+.. .......++.+++++|.+.+.. ...+..++++
T Consensus 215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLK-----------LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp CCSSCCCCCCCCEEEEESCEEEHHHHHHHHG-----------GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred ccchhhhhhcccceeccccccchhHHHHHHH-----------Hhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 3333445789999999999877654332211 1223456677799988876421 2345677889
Q ss_pred cEEEccCccCCCCC-----CCCCcCCCCCCeEecCCCcCCCCCCcCc-cCCCCCcEEEccCcccccCCC---ccccCCCC
Q 045935 355 VYLLLSNNMLSSKI-----PGSRSRLTNLTILDLSRNELAGSIPPEF-GDSLKLQGLFLGNNQLTDSIP---GSLGRLGG 425 (587)
Q Consensus 355 ~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~---~~l~~~~~ 425 (587)
+.+.+.++.+.... ...+...++|+++++++|.+. .+|..+ ..+++|++|++++|.+++..+ ..++.+++
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 99999998765321 111223468999999999987 666655 579999999999999986543 33678899
Q ss_pred CcEEEcCCCcCccccc--cccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccC
Q 045935 426 LVKLNLTGNKLSGLVP--TSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSN 503 (587)
Q Consensus 426 L~~L~L~~~~l~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 503 (587)
|++|++++|.+.+..+ ..+..+++|++|++++|.+. .++..+.... +|+.|++++|.++ .++..+.
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------~lp~~~~~~~--~L~~L~Ls~N~l~-~l~~~~~- 430 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--------PMPDSCQWPE--KMRFLNLSSTGIR-VVKTCIP- 430 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC--------CCCSCCCCCT--TCCEEECTTSCCS-CCCTTSC-
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc--------cCChhhcccc--cccEEECCCCCcc-cccchhc-
Confidence 9999999999985532 45888999999999998775 1233333333 9999999999998 4454442
Q ss_pred CCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhhHHHHHH
Q 045935 504 LSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVKYWKIF 582 (587)
Q Consensus 504 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l~~~ 582 (587)
++|++|++++|++++. ...+++|++|++++|.++ .+|. ...+++|++|++++|++++++.+.+..++.|+.+
T Consensus 431 -~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 431 -QTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp -TTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred -CCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence 6899999999999854 257899999999999998 5665 4679999999999999999999888877776643
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-41 Score=364.09 Aligned_cols=511 Identities=19% Similarity=0.166 Sum_probs=367.5
Q ss_pred ccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhh
Q 045935 12 TVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIG 91 (587)
Q Consensus 12 ~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 91 (587)
.+|+.+. +++++|||++|.|+ .++...|.++++|++|+|++|.+....+.+|.++++|++|+|++|++++..+..|.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 4555443 47999999999998 78878899999999999999999977788899999999999999999866667789
Q ss_pred cCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcc-cCCccccCCCCCceeecccccCCCCCCcccCCccccCC
Q 045935 92 ELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNG-SIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGP 170 (587)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~ 170 (587)
++++|++|++++|++++..+..++.+++|++|++++|.++. ..+..++.+++|++|++++|.+.+..+..+..+.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~---- 197 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH---- 197 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH----
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh----
Confidence 99999999999999998777789999999999999999875 3567788999999999999998765554443321
Q ss_pred CCcccccC-CCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccc-cccCccccCCCCCcEEEcCCcccccc--ccc-
Q 045935 171 LPSWFGKW-NQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVS-GSIPRELCNSESLVEINLDGNLLSGT--IED- 245 (587)
Q Consensus 171 ~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~- 245 (587)
++ .....++++.+.+....+. ......++.+++.++... ...+..+..+..++...+..+..... +..
T Consensus 198 ------~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 198 ------QMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp ------TCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ------hhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 11 2344677888877743333 334455677777776443 12333445556665554433221110 000
Q ss_pred -------------ccccccccc---cccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeeccccc
Q 045935 246 -------------LVLGNNHIH---GSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWE 308 (587)
Q Consensus 246 -------------l~l~~~~~~---~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 308 (587)
..+..+... ......+.... ++.+.+.++.+....+ +.....++.+.+.++.+.+.....
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~ 347 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLK 347 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---GGSCCCCSEEEEESCEESSCCCCB
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---cccchhhhhhhcccccccCcCccc
Confidence 000000000 01112222233 5555555555442221 122456666666666554322211
Q ss_pred ccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCC--CCCCCcCCCCCCeEecCCC
Q 045935 309 IGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSK--IPGSRSRLTNLTILDLSRN 386 (587)
Q Consensus 309 ~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 386 (587)
...++.+++..+..... .....+++|+.++++.|.+... .+..+....+|+.+++..+
T Consensus 348 ------------------l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 348 ------------------LKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407 (635)
T ss_dssp ------------------CTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred ------------------chhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence 22344556666665532 2344678899999998887532 2334456778999999888
Q ss_pred cCCCCCCcCccCCCCCcEEEccCcccccCCC-ccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccc
Q 045935 387 ELAGSIPPEFGDSLKLQGLFLGNNQLTDSIP-GSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHN 465 (587)
Q Consensus 387 ~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~ 465 (587)
... ..+..+..+++|+.+++..+......+ ..+..+++++.++++.|.+....+..+..++.+++|++++|.+.
T Consensus 408 ~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~---- 482 (635)
T 4g8a_A 408 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---- 482 (635)
T ss_dssp SEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG----
T ss_pred ccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc----
Confidence 765 445567889999999999887664433 45678899999999999998888888999999999999997532
Q ss_pred cccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccC
Q 045935 466 KLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQI 545 (587)
Q Consensus 466 ~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 545 (587)
....+..+.... +|+.|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..
T Consensus 483 --~~~~~~~~~~l~--~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 483 --ENFLPDIFTELR--NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558 (635)
T ss_dssp --GGEECSCCTTCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred --cccCchhhhhcc--ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC
Confidence 122334444444 9999999999999888999999999999999999999888889999999999999999999888
Q ss_pred ChhhcCC-CCCccccCCCCcceec
Q 045935 546 PKKICRL-SNLLYLSFEENRFAVL 568 (587)
Q Consensus 546 ~~~l~~l-~~L~~L~l~~n~i~~~ 568 (587)
|..|..+ ++|++|++++|++.+-
T Consensus 559 ~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 559 KQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp SSCTTCCCTTCCEEECTTCCBCCS
T ss_pred HHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999888 6899999999999874
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-41 Score=365.06 Aligned_cols=445 Identities=18% Similarity=0.205 Sum_probs=289.9
Q ss_pred CCCCEEeCCCCcCCCCcCcccccCCCCCcEEEc-cCCccccCCCCCcCCC-CCCcE-----EEe----------cccccc
Q 045935 21 TQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDV-SNNSLYGSFPPEIGNL-KNLTH-----FFL----------GINQFT 83 (587)
Q Consensus 21 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~~~l-~~L~~-----L~l----------~~~~~~ 83 (587)
..+..|+|+++.+.|.+| ..++++++|++|+| ++|.+.+..+..-... +.+.. +.. ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 457777777777777777 66777777888887 6666654422111000 00000 000 000000
Q ss_pred c-----------CCChhhhcCCCccEEecCC--CCCccCCccccccCCCCcEEEeccccCcc-----------------c
Q 045935 84 G-----------QLPPEIGELSLLEIFSSPS--CSITGPLPEELSNYGSSGILNLGSTQLNG-----------------S 133 (587)
Q Consensus 84 ~-----------~~~~~~~~l~~L~~L~l~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------------~ 133 (587)
. ..+........++.+.+.. |++++ +|..+.++++|++|++++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 0000112223444444443 67777 89999999999999999999997 2
Q ss_pred CCcccc--CCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCc-cCC-CCCccccCC-------
Q 045935 134 IPAELG--KCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQ-FVG-RIPPEIGSC------- 202 (587)
Q Consensus 134 ~~~~l~--~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------- 202 (587)
+|..++ ++++|++|++++|.+. +.+|..+.++++|+.|++++|+ +++ .+|..++++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~-------------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l 547 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNM-------------TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTC-------------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred CChhhhhccCCCCCEEECcCCCCC-------------ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence 888877 9999999999999964 4566678889999999999998 876 567655544
Q ss_pred CcccEEecCCCccccccCc--cccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCccc
Q 045935 203 SMLKYISLSSNFVSGSIPR--ELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGI 279 (587)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~ 279 (587)
++|++|++++|.++ .+|. .+..+++|+.|++++|.+. .+| .+..++ |+.|++++|.+. .
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~---------------~lp-~~~~L~~L~~L~Ls~N~l~-~ 609 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR---------------HLE-AFGTNVKLTDLKLDYNQIE-E 609 (876)
T ss_dssp TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC---------------BCC-CCCTTSEESEEECCSSCCS-C
T ss_pred CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc---------------cch-hhcCCCcceEEECcCCccc-c
Confidence 59999999999999 8888 8999999999999998866 334 444444 555555555554 3
Q ss_pred cchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCc-ccEEE
Q 045935 280 IPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTV-VVYLL 358 (587)
Q Consensus 280 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~-L~~L~ 358 (587)
+| ..+..+++ |+.|+
T Consensus 610 lp----------------------------------------------------------------~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 610 IP----------------------------------------------------------------EDFCAFTDQVEGLG 625 (876)
T ss_dssp CC----------------------------------------------------------------TTSCEECTTCCEEE
T ss_pred ch----------------------------------------------------------------HHHhhccccCCEEE
Confidence 33 23333333 44444
Q ss_pred ccCccCCCCCCCCCcCCC--CCCeEecCCCcCCCCCCcC---cc--CCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 045935 359 LSNNMLSSKIPGSRSRLT--NLTILDLSRNELAGSIPPE---FG--DSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNL 431 (587)
Q Consensus 359 l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~i~~~~~~~---~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L 431 (587)
+++|.+. ..+..+...+ +|+.|++++|.+.+..|.. +. .+++|+.|++++|.++......+..+++|++|++
T Consensus 626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704 (876)
T ss_dssp CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence 4444443 2222332222 2444444444444322211 11 2345666666666666333333345666666666
Q ss_pred CCCcCccccccccc-------cCCCCceeeccCCccccccccccccchhhhh--hcccccccEEecccccCccCCchhcc
Q 045935 432 TGNKLSGLVPTSLE-------NLKGLTHLDLSYNKLDVQHNKLSGPLNELFT--NSVAWNIATLNLSNNFFDGGLPRSLS 502 (587)
Q Consensus 432 ~~~~l~~~~~~~l~-------~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~ 502 (587)
++|.+.......+. +|++|++|++++|.+. .++..+. ... +|+.|++++|.+++ +|..+.
T Consensus 705 s~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--------~lp~~l~~~~l~--~L~~L~Ls~N~L~~-lp~~l~ 773 (876)
T 4ecn_A 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--------SLSDDFRATTLP--YLSNMDVSYNCFSS-FPTQPL 773 (876)
T ss_dssp CSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--------CCCGGGSTTTCT--TCCEEECCSSCCSS-CCCGGG
T ss_pred CCCcCCccChHHhccccccccccCCccEEECCCCCCc--------cchHHhhhccCC--CcCEEEeCCCCCCc-cchhhh
Confidence 66666522222222 2337777777776654 2233332 223 78888888888874 677888
Q ss_pred CCCCCcEEEccC------cccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhh
Q 045935 503 NLSYLTSVDLHR------NKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYV 576 (587)
Q Consensus 503 ~~~~L~~L~L~~------n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~ 576 (587)
.+++|+.|+|++ |++.+.+|..+.++++|++|++++|.+ +.+|..+. ++|+.|++++|++..++...+...
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~ 850 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPY 850 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHH
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccc
Confidence 899999999976 778888999999999999999999999 47887764 699999999999999988777554
Q ss_pred H
Q 045935 577 K 577 (587)
Q Consensus 577 ~ 577 (587)
.
T Consensus 851 ~ 851 (876)
T 4ecn_A 851 I 851 (876)
T ss_dssp H
T ss_pred c
Confidence 3
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-42 Score=368.27 Aligned_cols=460 Identities=17% Similarity=0.201 Sum_probs=322.9
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccc------c------CCCCCcCCCCCCcEEEecccccccCCChh
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLY------G------SFPPEIGNLKNLTHFFLGINQFTGQLPPE 89 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 89 (587)
+++.|+|+++.+.|.+| ..++++++|++|+|++|.+. + .+|... +..|+ ++++.+.+.+..+..
T Consensus 82 ~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 55666666666666666 55566666666666666441 1 111111 23344 444444444433333
Q ss_pred hhc-CCCccEEecCCCCCccCCccccccCCCCcEEEec--cccCcccCCccccCCCCCceeecccccCCCC-CCcccCC-
Q 045935 90 IGE-LSLLEIFSSPSCSITGPLPEELSNYGSSGILNLG--STQLNGSIPAELGKCENLKSVLLSFNALPGS-LPEQLSE- 164 (587)
Q Consensus 90 ~~~-l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~- 164 (587)
+.. +..+..+++....+. ......++.+.+. .|.+++ +|..++++++|++|++++|.+++. .+.....
T Consensus 158 ~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 321 122222222211111 0111223333332 467776 888999999999999999998752 1110000
Q ss_pred --ccccCCCCcccc--cCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCc-ccc-ccCccccCC------CCCcEE
Q 045935 165 --LPLSGPLPSWFG--KWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNF-VSG-SIPRELCNS------ESLVEI 232 (587)
Q Consensus 165 --l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L 232 (587)
-...+.+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..+..+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 000111677788 99999999999999998999999999999999999998 887 788877765 788888
Q ss_pred EcCCcccccccccccccccccccccCcccCCCCccEEeccCCCCccccch-hhhhcCCccceecccccceeecccccccc
Q 045935 233 NLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPL-SLWKNSKNLIEFSAASNLLEGYLPWEIGN 311 (587)
Q Consensus 233 ~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 311 (587)
++++|.++ .+|. ..+..+++|+.|
T Consensus 311 ~L~~n~l~--------------------------------------~ip~~~~l~~l~~L~~L----------------- 335 (636)
T 4eco_A 311 YIGYNNLK--------------------------------------TFPVETSLQKMKKLGML----------------- 335 (636)
T ss_dssp ECCSSCCS--------------------------------------SCCCHHHHTTCTTCCEE-----------------
T ss_pred ECCCCcCC--------------------------------------ccCchhhhccCCCCCEE-----------------
Confidence 88777654 2333 112224555555
Q ss_pred hhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCC-CCeEecCCCcCCC
Q 045935 312 AIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTN-LTILDLSRNELAG 390 (587)
Q Consensus 312 ~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~~ 390 (587)
++++|.+.+.+| .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.++
T Consensus 336 ----------------------~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 336 ----------------------ECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp ----------------------ECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred ----------------------eCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 444444444455 6677889999999999988 56667888999 999999999998
Q ss_pred CCCcCccCCC--CCcEEEccCcccccCCCcccc-------CCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccc
Q 045935 391 SIPPEFGDSL--KLQGLFLGNNQLTDSIPGSLG-------RLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461 (587)
Q Consensus 391 ~~~~~~~~~~--~L~~L~L~~~~~~~~~~~~l~-------~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~ 461 (587)
.+|..+..++ +|++|++++|.+++..+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 7787777655 899999999999988887777 7889999999999998554455677999999999998876
Q ss_pred cccccccccchhhhhhcccccccEEecccccCccCCchhcc--CCCCCcEEEccCcccccCCCcccCCCCCCceecC---
Q 045935 462 VQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLS--NLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDV--- 536 (587)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l--- 536 (587)
................+. +|+.|++++|.++ .+|..+. .+++|++|++++|++++ +|..+.++++|++|++
T Consensus 471 ~i~~~~~~~~~~~~~~l~--~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTY--LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp BCCSSSSEETTEECTTGG--GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred CcCHHHhccccccccccC--CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 211111111100011122 8999999999999 7888886 99999999999999995 8999999999999999
Q ss_pred ---CCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhh
Q 045935 537 ---SKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYV 576 (587)
Q Consensus 537 ---~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~ 576 (587)
++|.+.+.+|..+.++++|++|++++|+++.++...+..+
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L 589 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI 589 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTC
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCcC
Confidence 5677888999999999999999999999998887755433
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-39 Score=350.19 Aligned_cols=509 Identities=20% Similarity=0.169 Sum_probs=374.2
Q ss_pred CEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCC
Q 045935 24 PNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPS 103 (587)
Q Consensus 24 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (587)
++.+=++.++. ++|.+ +. +++++|+|++|.++...+.+|.++++|++|++++|.+++..+.+|.++++|++|++++
T Consensus 34 ~~~~c~~~~l~-~vP~~-lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPDN-LP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TEEECTTSCCS-SCCSS-SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCcC-ccCCC-CC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 45566666777 78832 22 4799999999999977788999999999999999999977778899999999999999
Q ss_pred CCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCE
Q 045935 104 CSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDS 183 (587)
Q Consensus 104 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~ 183 (587)
|+++...+.+|..+++|++|++++|.+++..+..|+++++|++|++++|.+.+. ..|..+..+++|++
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~------------~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF------------KLPEYFSNLTNLEH 177 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------------CCCGGGGGCTTCCE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC------------CCchhhccchhhhh
Confidence 999987778899999999999999999977777899999999999999997532 34566788999999
Q ss_pred EeCCCCccCCCCCccccCCCc----ccEEecCCCccccccCccccCCCCCcEEEcCCccccccccc--------ccccc-
Q 045935 184 LLLSSNQFVGRIPPEIGSCSM----LKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIED--------LVLGN- 250 (587)
Q Consensus 184 L~l~~~~~~~~~~~~l~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------l~l~~- 250 (587)
|++++|++++..+..+..+++ ...++++.|.++...+.. .....++.+.+.++.....+.. +.+..
T Consensus 178 L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l 256 (635)
T 4g8a_A 178 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 256 (635)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEE
T ss_pred hcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccc
Confidence 999999998777777765544 447889999988544443 3445677888877754321111 00000
Q ss_pred --------cccccccCcccCCCC-ccEEeccCCCCcc--ccchhhhhcCCccceecccccceeecccccccchhhhHHHH
Q 045935 251 --------NHIHGSIPEYLSELP-LVVLDLDSNNFTG--IIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLV 319 (587)
Q Consensus 251 --------~~~~~~~~~~~~~~~-L~~L~l~~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~ 319 (587)
..+.......+.... +....+..+.... ......+.....+..+.+..+.+..
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---------------- 320 (635)
T 4g8a_A 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER---------------- 320 (635)
T ss_dssp EEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE----------------
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc----------------
Confidence 001111111222222 2222222211110 0111112224455555555554432
Q ss_pred hhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCC--CCCcCcc
Q 045935 320 KIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAG--SIPPEFG 397 (587)
Q Consensus 320 ~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~ 397 (587)
+....+...++.+++..+.+....+ ..++.++.+.+.++...... ....+++|+.+++++|.+.. ..+..+.
T Consensus 321 -~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 321 -VKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp -CGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred -ccccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchh
Confidence 2233445567778888888774433 24567888999888876432 23467899999999998753 3455567
Q ss_pred CCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccc-cccccCCCCceeeccCCccccccccccccchhhhh
Q 045935 398 DSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVP-TSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFT 476 (587)
Q Consensus 398 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~ 476 (587)
.+.+|+.+++..+.... .+..+..+++|+.++++++......+ ..+..+++++.+++++|.+.. ..+..+.
T Consensus 395 ~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~-------~~~~~~~ 466 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------AFNGIFN 466 (635)
T ss_dssp SCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE-------CCTTTTT
T ss_pred hhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccc-------ccccccc
Confidence 78899999999998764 44556789999999999987654433 467889999999999977653 3333344
Q ss_pred hcccccccEEecccccCc-cCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCC
Q 045935 477 NSVAWNIATLNLSNNFFD-GGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNL 555 (587)
Q Consensus 477 ~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 555 (587)
... +++.|++++|... ...|..|..+++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|..+++|
T Consensus 467 ~~~--~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 467 GLS--SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred cch--hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 444 8999999999754 3577889999999999999999998889999999999999999999998888999999999
Q ss_pred ccccCCCCcceecCcCchhhh-HHHHH
Q 045935 556 LYLSFEENRFAVLGINRLDYV-KYWKI 581 (587)
Q Consensus 556 ~~L~l~~n~i~~~~~~~~~~~-~~l~~ 581 (587)
++|++++|+++.+.++.+.++ ++|+.
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 999999999999999988766 45554
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.8e-40 Score=346.27 Aligned_cols=465 Identities=19% Similarity=0.164 Sum_probs=242.6
Q ss_pred CCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEe
Q 045935 21 TQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFS 100 (587)
Q Consensus 21 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 100 (587)
...+++++++++++ .+|.... ++|++|++++|.+.+..+.+|.++++|++|++++|.+++..|..+.++++|++|+
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 34477777777777 5773332 6777777777777755556777777777777777777766667777777777777
Q ss_pred cCCCCCccCCccccccCCCCcEEEeccccCccc-CCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCC
Q 045935 101 SPSCSITGPLPEELSNYGSSGILNLGSTQLNGS-IPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWN 179 (587)
Q Consensus 101 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~ 179 (587)
+++|.++. +|.. .+++|++|++++|.+++. .+..|+++++|++|++++|.+.+. .+..++
T Consensus 107 Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----------------~~~~l~ 167 (562)
T 3a79_B 107 VSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----------------DLLPVA 167 (562)
T ss_dssp CTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----------------TTGGGT
T ss_pred CCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----------------chhhhh
Confidence 77777763 4433 677777777777777652 346777777777777777776421 123334
Q ss_pred CC--CEEeCCCCcc--CCCCCccccCCC-cccEEecCCCccccccCc-cccCCCCCcEEEcCCccccccccccccccccc
Q 045935 180 QL--DSLLLSSNQF--VGRIPPEIGSCS-MLKYISLSSNFVSGSIPR-ELCNSESLVEINLDGNLLSGTIEDLVLGNNHI 253 (587)
Q Consensus 180 ~L--~~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~ 253 (587)
+| ++|++++|.+ ++..+..+..+. ..-.+++++|.+.+..+. .+..+++|+.+++++|..... .+
T Consensus 168 ~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---------~l 238 (562)
T 3a79_B 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ---------RL 238 (562)
T ss_dssp TSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH---------HH
T ss_pred hceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc---------hH
Confidence 44 7777777777 555566665543 122456666666543332 344567777777777641100 00
Q ss_pred ccccCcccCCCC-ccEEeccCCCCccccchhhh--hcCCccceecccccceeecccccccchhhhHHHHhhccccccccc
Q 045935 254 HGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLW--KNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHH 330 (587)
Q Consensus 254 ~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 330 (587)
. .....+...+ ++.+++.++.+.+....... ...++|+++++.+|.+.+.+|..+....
T Consensus 239 ~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~----------------- 300 (562)
T 3a79_B 239 M-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS----------------- 300 (562)
T ss_dssp H-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC-----------------
T ss_pred H-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc-----------------
Confidence 0 0111122222 44444433333221110000 0123455555554444433332221000
Q ss_pred ceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCc---CCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEc
Q 045935 331 GVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRS---RLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFL 407 (587)
Q Consensus 331 ~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L 407 (587)
...++.|+.+++..+.+ ......+. ...+|++|++++|.+.... ....+++|++|++
T Consensus 301 -----------------~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 301 -----------------ETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp -----------------SCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred -----------------cccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 03333333333333332 01000000 1134555555555543221 1134455555555
Q ss_pred cCcccccCCCccccCCCCCcEEEcCCCcCccc--cccccccCCCCceeeccCCccccccccccccchhhhhhcccccccE
Q 045935 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGL--VPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIAT 485 (587)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~ 485 (587)
++|.+++..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+... .....+.... +|+.
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~------~~~~~~~~l~--~L~~ 432 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH------AYDRTCAWAE--SILV 432 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC------CSSCCCCCCT--TCCE
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc------cChhhhcCcc--cCCE
Confidence 55555544445555555555555555555432 123345555555555555444310 0000111111 5556
Q ss_pred EecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChh-hcCCCCCccccCCCCc
Q 045935 486 LNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKK-ICRLSNLLYLSFEENR 564 (587)
Q Consensus 486 L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~ 564 (587)
|++++|.+++..+..+. ++|++|++++|+++ .+|..+.++++|++|++++|.++. +|.. |..+++|+.|++++|+
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCC
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCC
Confidence 66666655543333332 56666666666666 455555566666666666666663 3433 6666666667777766
Q ss_pred cee
Q 045935 565 FAV 567 (587)
Q Consensus 565 i~~ 567 (587)
+.+
T Consensus 509 ~~c 511 (562)
T 3a79_B 509 WDC 511 (562)
T ss_dssp BCC
T ss_pred cCC
Confidence 654
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.4e-41 Score=349.30 Aligned_cols=448 Identities=19% Similarity=0.202 Sum_probs=330.7
Q ss_pred cEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccc
Q 045935 49 SHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGST 128 (587)
Q Consensus 49 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 128 (587)
++|++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|++++..|.++..+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999998 6776665 89999999999998776788999999999999999998877888999999999999999
Q ss_pred cCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcc--c
Q 045935 129 QLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSML--K 206 (587)
Q Consensus 129 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~ 206 (587)
.++ .++.. .+++|++|++++|.+.+. .+|..++++++|++|++++|.+++ ..+..+++| +
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~------------~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~ 141 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDAL------------PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNIS 141 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSC------------CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEE
T ss_pred cee-ecCcc--ccCCccEEeccCCccccc------------cchhhhccCCcceEEEecCcccch---hhccccccceee
Confidence 888 44444 788899999999887521 345667788888999988888764 356677777 8
Q ss_pred EEecCCCcc--ccccCccccCCCC-CcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCC-------
Q 045935 207 YISLSSNFV--SGSIPRELCNSES-LVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNN------- 275 (587)
Q Consensus 207 ~L~l~~~~~--~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~------- 275 (587)
+|++++|.+ .+..|..+..+.. ...+++++|.+.+. ..+..+..++ ++.+++++|.
T Consensus 142 ~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~-------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF-------------ILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp EEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCC-------------CCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred EEEeecccccccccccccccccccceEEEEeccCcchhh-------------hhhhhhhcccceeeccccccccccccce
Confidence 888888888 6666666655442 23344444443321 1223344455 6666666654
Q ss_pred CccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCccc
Q 045935 276 FTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVV 355 (587)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~ 355 (587)
+.+.++ . +..++.|+.+++.++.+.+..+.. ..+ .. ..++|+
T Consensus 209 ~~~~~~-~-l~~l~~L~~L~l~~~~l~~~~~~~----------------------------------~~~-~~-~~~~L~ 250 (520)
T 2z7x_B 209 FLSILA-K-LQTNPKLSNLTLNNIETTWNSFIR----------------------------------ILQ-LV-WHTTVW 250 (520)
T ss_dssp HHHHHH-G-GGGCTTCCEEEEEEEEEEHHHHHH----------------------------------HHH-HH-HTSSCS
T ss_pred eecchh-h-hccccchhhccccccccCHHHHHH----------------------------------HHH-Hh-hhCccc
Confidence 333332 1 223555666655555443221100 000 00 124788
Q ss_pred EEEccCccCCCCCCCCC-----cCCCCCCeEecCCCcCCCCCC-cCccCC---CCCcEEEccCcccccCCCccccCCCCC
Q 045935 356 YLLLSNNMLSSKIPGSR-----SRLTNLTILDLSRNELAGSIP-PEFGDS---LKLQGLFLGNNQLTDSIPGSLGRLGGL 426 (587)
Q Consensus 356 ~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~i~~~~~-~~~~~~---~~L~~L~L~~~~~~~~~~~~l~~~~~L 426 (587)
.|++++|.+.+..+..+ ..+++|+.+++++|.+ ..| ..+..+ .+|+.|++++|.+.... ....+++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L 326 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF 326 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence 88888888775666655 7889999999999988 344 333333 67999999999886433 12578999
Q ss_pred cEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCch-hccCCC
Q 045935 427 VKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPR-SLSNLS 505 (587)
Q Consensus 427 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~ 505 (587)
++|++++|.+.+..+..+..+++|++|++++|.+... +..+..+.... +|+.|++++|.+++.+|. .+..++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----~~~~~~~~~l~--~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-----SKIAEMTTQMK--SLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-----HHHHHHHTTCT--TCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-----ccchHHHhhCC--CCCEEECCCCcCCcccccchhccCc
Confidence 9999999999987888999999999999999876410 12334455555 999999999999974554 488899
Q ss_pred CCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhhHHHHHH
Q 045935 506 YLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVKYWKIF 582 (587)
Q Consensus 506 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l~~~ 582 (587)
+|++|++++|++++..+..+. ++|++|++++|.++ .+|..+..+++|++|++++|+++.++...+..++.|+.+
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 999999999999877666654 79999999999999 788877899999999999999999988877777766543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.9e-38 Score=328.62 Aligned_cols=456 Identities=19% Similarity=0.173 Sum_probs=330.5
Q ss_pred cCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcE
Q 045935 43 TNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGI 122 (587)
Q Consensus 43 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 122 (587)
..+...++++++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+.++..+++|++
T Consensus 28 ~~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 28 FSNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp -----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 44556689999999998 5776654 89999999999999777789999999999999999999888999999999999
Q ss_pred EEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCC
Q 045935 123 LNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSC 202 (587)
Q Consensus 123 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 202 (587)
|++++|.++ .++.. .+++|++|++++|.+.+. .+|..|.++++|++|++++|.++.. .+..+
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l------------~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l 166 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVL------------PVCKEFGNLTKLTFLGLSAAKFRQL---DLLPV 166 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBC------------CCCGGGGGCTTCCEEEEECSBCCTT---TTGGG
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCcccc------------CchHhhcccCcccEEecCCCccccC---chhhh
Confidence 999999998 55554 799999999999997631 3456788999999999999998753 45556
Q ss_pred Ccc--cEEecCCCcc--ccccCccccCCCC-CcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCC
Q 045935 203 SML--KYISLSSNFV--SGSIPRELCNSES-LVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNF 276 (587)
Q Consensus 203 ~~L--~~L~l~~~~~--~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~ 276 (587)
++| ++|++++|.+ ++..|..+..+.. .-.+++++|.+.+. .....+..++ ++.+++++|..
T Consensus 167 ~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~-------------~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV-------------QVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCC-------------CCEEEESSEEEEEEEEEECCST
T ss_pred hhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhh-------------hhhhcccccceEEEeccccccc
Confidence 666 9999999998 7777877766541 12445555554321 1112334455 77777777642
Q ss_pred cc-ccch--hhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCc
Q 045935 277 TG-IIPL--SLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTV 353 (587)
Q Consensus 277 ~~-~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~ 353 (587)
.- .++. ..+...+.++.+.+.++.+.+ +.+.+.. ..+ ..++
T Consensus 234 ~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~----------------------------------~~~~~~~-~~~-~~~~ 277 (562)
T 3a79_B 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTW----------------------------------KCSVKLF-QFF-WPRP 277 (562)
T ss_dssp THHHHHHHHHHHHSCSSCEEEEEEEEEECH----------------------------------HHHHHHH-HHH-TTSS
T ss_pred ccchHHHHHHHHhccCcceEEEecCCcCcH----------------------------------HHHHHHH-Hhh-hccc
Confidence 10 0000 112335666666665554332 2221111 111 2247
Q ss_pred ccEEEccCccCCCCCCCCC-----cCCCCCCeEecCCCcCCCCCC-cCcc---CCCCCcEEEccCcccccCCCccccCCC
Q 045935 354 VVYLLLSNNMLSSKIPGSR-----SRLTNLTILDLSRNELAGSIP-PEFG---DSLKLQGLFLGNNQLTDSIPGSLGRLG 424 (587)
Q Consensus 354 L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~i~~~~~-~~~~---~~~~L~~L~L~~~~~~~~~~~~l~~~~ 424 (587)
|++|++++|.+.+..+..+ ..++.|+.+++..+.+ ..| ..+. ...+|++|++++|.+.... ....++
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~ 353 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPS 353 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCC
Confidence 8888888888875555444 4444455555555544 222 1111 2367999999999886432 125789
Q ss_pred CCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCc-hhccC
Q 045935 425 GLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLP-RSLSN 503 (587)
Q Consensus 425 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~ 503 (587)
+|++|++++|.+.+..+..+..+++|++|++++|.+... ...+..+.... +|+.|++++|.+++.+| ..+..
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-----FKVALMTKNMS--SLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT-----THHHHTTTTCT--TCCEEECTTSCCBSCCSSCCCCC
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc-----ccchhhhcCCC--CCCEEECCCCcCCCccChhhhcC
Confidence 999999999999988888999999999999999876521 12233344444 99999999999987344 45889
Q ss_pred CCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhhHHHHHH
Q 045935 504 LSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVKYWKIF 582 (587)
Q Consensus 504 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l~~~ 582 (587)
+++|++|++++|++++.++..+. ++|++|++++|.++ .+|..+..+++|++|++++|+++.++...+..++.|+.+
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 99999999999999876665554 79999999999998 677777799999999999999999988877777766543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-36 Score=310.87 Aligned_cols=365 Identities=19% Similarity=0.139 Sum_probs=217.5
Q ss_pred CCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCC-ChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEE
Q 045935 46 QSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQL-PPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILN 124 (587)
Q Consensus 46 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 124 (587)
++|++|++++|.+.+..+..|.++++|++|++++|.+.+.+ +..+.++++|++|++++|.+++..+.++..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 44555555555554444445555555555555555443222 33445555555555555555544445555555555555
Q ss_pred eccccCcccCCcc--ccCCCCCceeecccccCCCCCCcccCCccccCCCCcc-cccCCCCCEEeCCCCccCCCCCccccC
Q 045935 125 LGSTQLNGSIPAE--LGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSW-FGKWNQLDSLLLSSNQFVGRIPPEIGS 201 (587)
Q Consensus 125 l~~~~~~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~ 201 (587)
+++|.+++..+.. +..+++|++|++++|.+.+.. |.. +.++++|++|++++|.+++..+..+..
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ-------------PASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC-------------CCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccC-------------cccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 5555554322222 445555555555555543221 111 344455555555555555444444443
Q ss_pred C--CcccEEecCCCccccccCcc--------ccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCCccEEec
Q 045935 202 C--SMLKYISLSSNFVSGSIPRE--------LCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDL 271 (587)
Q Consensus 202 ~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l 271 (587)
+ ++|+.+++++|.+.+..+.. +..+++|++|++++|.+.+..+. .+...+....++.+++
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----------~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK----------RFFDAIAGTKIQSLIL 246 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH----------HHHHHTTTCCEEEEEC
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh----------hhhccccccceeeEee
Confidence 3 45555555555554332222 12334555555555554422111 0011111122555555
Q ss_pred cCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCC
Q 045935 272 DSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNC 351 (587)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~ 351 (587)
+++...+..... ...+..... .+..+ ....++.+++++|.+.+..+..+..+
T Consensus 247 ~~~~~~~~~~~~--~~~~~~~~~-------------~~~~~-------------~~~~L~~L~l~~n~l~~~~~~~~~~l 298 (455)
T 3v47_A 247 SNSYNMGSSFGH--TNFKDPDNF-------------TFKGL-------------EASGVKTCDLSKSKIFALLKSVFSHF 298 (455)
T ss_dssp TTCTTTSCCTTC--CSSCCCCTT-------------TTGGG-------------TTSCCCEEECCSSCCCEECTTTTTTC
T ss_pred ccccccccccch--hhhccCccc-------------ccccc-------------cccCceEEEecCccccccchhhcccC
Confidence 555443211000 000111000 00000 12345666888888888888889999
Q ss_pred CcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 045935 352 TVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNL 431 (587)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L 431 (587)
++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 99999999999998888888899999999999999998777888999999999999999999888888999999999999
Q ss_pred CCCcCccccccccccCCCCceeeccCCccc
Q 045935 432 TGNKLSGLVPTSLENLKGLTHLDLSYNKLD 461 (587)
Q Consensus 432 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~ 461 (587)
++|.+.+..+..+..+++|++|++++|++.
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 999998776677889999999999998875
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-35 Score=305.37 Aligned_cols=389 Identities=18% Similarity=0.170 Sum_probs=206.3
Q ss_pred EEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCC-ccccccCCCCcEEEeccc
Q 045935 50 HLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPL-PEELSNYGSSGILNLGST 128 (587)
Q Consensus 50 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~ 128 (587)
.++.+++.+. .+|. + .++|++|++++|.+++..|..+.++++|++|++++|.+...+ +..+..+++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3445555444 3443 1 255666666666666555566666666666666666654332 345666666666666666
Q ss_pred cCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCcc-ccCCCcccE
Q 045935 129 QLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPE-IGSCSMLKY 207 (587)
Q Consensus 129 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~ 207 (587)
.+++..+..++++++|++|++++|.+.+..+. ...+..+++|++|++++|.+++..|.. +.++++|++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLS-----------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHH-----------SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccC-----------cccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 66655556666666666666666665422111 112445566666666666666544443 556666666
Q ss_pred EecCCCccccccCccccCC--CCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCccccchhh
Q 045935 208 ISLSSNFVSGSIPRELCNS--ESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSL 284 (587)
Q Consensus 208 L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~ 284 (587)
|++++|.+++..+..+..+ .+++.|++++|.+...... .+.......+...+ ++.|++++|.+.+..+..+
T Consensus 159 L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY------WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp EECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT------CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred EeCCCCcccccChhhhhccccccccccccccCcccccchh------hccccccccccccceeeeEecCCCcccccchhhh
Confidence 6666666665555555543 4566666666655421100 00000011122333 6666666666665555444
Q ss_pred hhc--CCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcC--CCCcccEEEcc
Q 045935 285 WKN--SKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLG--NCTVVVYLLLS 360 (587)
Q Consensus 285 ~~~--~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~--~~~~L~~L~l~ 360 (587)
+.. .+.++.+++.++...+. .+..+.+....+..+. ..+.|+.|+++
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGS-----------------------------SFGHTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSC-----------------------------CTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred hccccccceeeEeecccccccc-----------------------------ccchhhhccCcccccccccccCceEEEec
Confidence 331 25556665555542211 1111111111111111 12456666666
Q ss_pred CccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCcccc
Q 045935 361 NNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLV 440 (587)
Q Consensus 361 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~ 440 (587)
+|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 284 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 66666555555666666666666666666555556666666666666666666555555666666666666666666555
Q ss_pred ccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCC
Q 045935 441 PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGL 497 (587)
Q Consensus 441 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 497 (587)
+..+..+++|++|++++|.+. +..+..+.... +|+.|++++|+++...
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~--~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLK-------SVPDGIFDRLT--SLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-------CCCTTTTTTCT--TCCEEECCSSCBCCCT
T ss_pred hhhccccccccEEECCCCccc-------cCCHhHhccCC--cccEEEccCCCcccCC
Confidence 556666666666666665543 11222222333 6666666666665433
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.8e-35 Score=295.25 Aligned_cols=409 Identities=24% Similarity=0.257 Sum_probs=193.1
Q ss_pred ccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccE
Q 045935 19 ELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEI 98 (587)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 98 (587)
+.++|++|+++++.+ +++| ..++++++|++|++++|.+.+..|..++++++|+++++.+|.. .++++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHE 75 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSE
T ss_pred ccccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCE
Confidence 468899999999999 5899 6689999999999999999888999999888876555555431 34566
Q ss_pred EecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccC
Q 045935 99 FSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKW 178 (587)
Q Consensus 99 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~ 178 (587)
|++++|.+++ +|. -.++|++|++++|.+++ ++.. .++|++|++++|.+.+ ++.. .
T Consensus 76 L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~--------------l~~~---~ 130 (454)
T 1jl5_A 76 LELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA--------------LSDL---P 130 (454)
T ss_dssp EECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC--------------CCSC---C
T ss_pred EEecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc--------------ccCC---C
Confidence 6666666653 222 12566677776666664 3332 3566777777666542 1110 1
Q ss_pred CCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccC
Q 045935 179 NQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIP 258 (587)
Q Consensus 179 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~ 258 (587)
++|++|++++|.+++ +| .++++++|++|++++|.+++ +|..+ .+|++|++++|.+. .+|
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~---------------~l~ 189 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE---------------ELP 189 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS---------------SCC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC---------------cCc
Confidence 467777777777664 44 46667777777777776663 44332 46677777666655 233
Q ss_pred cccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccC
Q 045935 259 EYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSF 337 (587)
Q Consensus 259 ~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~ 337 (587)
.+..++ ++.+++++|.+.+ ++.. .++|+++ ++++
T Consensus 190 -~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L---------------------------------------~l~~ 224 (454)
T 1jl5_A 190 -ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESI---------------------------------------VAGN 224 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEE---------------------------------------ECCS
T ss_pred -cccCCCCCCEEECCCCcCCc-CCCC----cCcccEE---------------------------------------ECcC
Confidence 344555 6666666665553 2211 1233333 4444
Q ss_pred CcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCC
Q 045935 338 NRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIP 417 (587)
Q Consensus 338 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 417 (587)
|.+. .+| .+..+++|+.|++++|.+... +. .+++|++|++++|.+.+ +|.. +++|++|++++|.+++..
T Consensus 225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~- 293 (454)
T 1jl5_A 225 NILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS- 293 (454)
T ss_dssp SCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-
T ss_pred CcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-
Confidence 4444 333 255556666666666665532 21 12556666666666553 3322 255666666666655321
Q ss_pred ccccCCCCCcEEEcCCCcCccccccccccC-CCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccC
Q 045935 418 GSLGRLGGLVKLNLTGNKLSGLVPTSLENL-KGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGG 496 (587)
Q Consensus 418 ~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~ 496 (587)
. ..++|++|++++|.+.+. + .+ ++|++|++++|.+.. ++.. +++|+.|++++|.++ .
T Consensus 294 ~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~--------lp~~-----~~~L~~L~L~~N~l~-~ 351 (454)
T 1jl5_A 294 E---LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE--------LPAL-----PPRLERLIASFNHLA-E 351 (454)
T ss_dssp C---CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC--------CCCC-----CTTCCEEECCSSCCS-C
T ss_pred C---cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc--------cccc-----CCcCCEEECCCCccc-c
Confidence 1 124566666666665531 1 12 356666666655431 1111 126666666666666 3
Q ss_pred CchhccCCCCCcEEEccCccccc--CCCcccCCC-------------CCCceecCCCCcccc--cCChhhcCCCCCcccc
Q 045935 497 LPRSLSNLSYLTSVDLHRNKFTG--EIPPELGNL-------------IQLEYLDVSKNMLCG--QIPKKICRLSNLLYLS 559 (587)
Q Consensus 497 ~~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~l-------------~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~ 559 (587)
+|. .+++|++|++++|++++ .+|..+..+ ++|++|++++|++++ .+| ++++.|.
T Consensus 352 lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~ 422 (454)
T 1jl5_A 352 VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLR 422 (454)
T ss_dssp CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------
T ss_pred ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhhee
Confidence 443 35666666666666665 455555554 788999999998875 344 3466777
Q ss_pred CCCCcceecCcCch
Q 045935 560 FEENRFAVLGINRL 573 (587)
Q Consensus 560 l~~n~i~~~~~~~~ 573 (587)
+.+|.+.+.-.-..
T Consensus 423 ~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 423 MNSERVVDPYEFAH 436 (454)
T ss_dssp --------------
T ss_pred CcCcccCCccccCH
Confidence 88887766544333
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-33 Score=288.23 Aligned_cols=190 Identities=23% Similarity=0.281 Sum_probs=118.0
Q ss_pred cccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCcc
Q 045935 18 GELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLE 97 (587)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 97 (587)
..++++++|+++++.+. .++ + +..+++|++|++++|.+.+. +. +.++++|++|++++|.+.+. +. +.++++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-G-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-T-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred hHhccccEEecCCCCCc-cCc-c-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccC-hh-hcCCCCCC
Confidence 34677788888877776 566 2 66778888888888777633 32 77777888888877777643 23 77777777
Q ss_pred EEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCccccc
Q 045935 98 IFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGK 177 (587)
Q Consensus 98 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~ 177 (587)
+|++++|.+++.. .+..+++|++|++++|.+.+. ..+..+++|++|++++ .+.+ ...+.+
T Consensus 116 ~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~---------------~~~~~~ 175 (466)
T 1o6v_A 116 GLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTD---------------LKPLAN 175 (466)
T ss_dssp EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCC---------------CGGGTT
T ss_pred EEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccC---------------chhhcc
Confidence 7777777776542 367777777777777776632 2466677777777653 2210 112455
Q ss_pred CCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcc
Q 045935 178 WNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNL 238 (587)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 238 (587)
+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC
Confidence 66666666666666532 235556666666666665553332 3344555555554443
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-33 Score=290.31 Aligned_cols=346 Identities=28% Similarity=0.353 Sum_probs=201.2
Q ss_pred CCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEE
Q 045935 44 NLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGIL 123 (587)
Q Consensus 44 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 123 (587)
.++++++|+++++.+. .++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3567888888888776 344 467788888888888877743 33 7778888888888877775433 7777777777
Q ss_pred EeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCC
Q 045935 124 NLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCS 203 (587)
Q Consensus 124 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 203 (587)
++++|.+++.. .+..+++|++|++++|.+.+ + ..+..+++|++|+++ +.+... ..+.+++
T Consensus 118 ~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~--------------~-~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~ 177 (466)
T 1o6v_A 118 TLFNNQITDID--PLKNLTNLNRLELSSNTISD--------------I-SALSGLTSLQQLSFG-NQVTDL--KPLANLT 177 (466)
T ss_dssp ECCSSCCCCCG--GGTTCTTCSEEEEEEEEECC--------------C-GGGTTCTTCSEEEEE-ESCCCC--GGGTTCT
T ss_pred ECCCCCCCCCh--HHcCCCCCCEEECCCCccCC--------------C-hhhccCCcccEeecC-CcccCc--hhhccCC
Confidence 77777776432 26677777777777776542 1 124556666666664 233311 2255666
Q ss_pred cccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCCccEEeccCCCCccccchh
Q 045935 204 MLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLS 283 (587)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 283 (587)
+|++|++++|.+++. ..+..+++|++|++++|.+. +..+
T Consensus 178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-------------------------------------~~~~-- 216 (466)
T 1o6v_A 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS-------------------------------------DITP-- 216 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-------------------------------------CCGG--
T ss_pred CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccc-------------------------------------cccc--
Confidence 666666666655522 22444455555555444332 1111
Q ss_pred hhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCcc
Q 045935 284 LWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNM 363 (587)
Q Consensus 284 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 363 (587)
+..+++|+.|++++|.
T Consensus 217 ----------------------------------------------------------------~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 217 ----------------------------------------------------------------LGILTNLDELSLNGNQ 232 (466)
T ss_dssp ----------------------------------------------------------------GGGCTTCCEEECCSSC
T ss_pred ----------------------------------------------------------------ccccCCCCEEECCCCC
Confidence 1122333333333333
Q ss_pred CCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccc
Q 045935 364 LSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTS 443 (587)
Q Consensus 364 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~ 443 (587)
+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+
T Consensus 233 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-- 304 (466)
T 1o6v_A 233 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-- 304 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--
T ss_pred cccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--
Confidence 3221 123334444445554444442221 4445555555555555543222 4455555555555555543322
Q ss_pred cccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCc
Q 045935 444 LENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPP 523 (587)
Q Consensus 444 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 523 (587)
+..+++|++|++++|.+. +..+ +.... +|+.|++++|.+++. ..+..+++|++|++++|++++..|
T Consensus 305 ~~~l~~L~~L~L~~n~l~-------~~~~--~~~l~--~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 370 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNIS-------DISP--VSSLT--KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP- 370 (466)
T ss_dssp GGGCTTCSEEECCSSCCS-------CCGG--GGGCT--TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-
T ss_pred hcCCCCCCEEECcCCcCC-------Cchh--hccCc--cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-
Confidence 455555555555554432 1111 12222 667777777776643 468889999999999999986655
Q ss_pred ccCCCCCCceecCCCCcccc
Q 045935 524 ELGNLIQLEYLDVSKNMLCG 543 (587)
Q Consensus 524 ~l~~l~~L~~L~l~~n~l~~ 543 (587)
+..+++|++|++++|++++
T Consensus 371 -~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 -LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -GTTCTTCCEEECCCEEEEC
T ss_pred -hhcCCCCCEEeccCCcccC
Confidence 7889999999999998875
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-33 Score=286.38 Aligned_cols=387 Identities=27% Similarity=0.346 Sum_probs=264.3
Q ss_pred CCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEE
Q 045935 45 LQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILN 124 (587)
Q Consensus 45 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 124 (587)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++.+|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 57889999999988 58898899999999999999988888888888888888777766542 4689999
Q ss_pred eccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCc
Q 045935 125 LGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSM 204 (587)
Q Consensus 125 l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 204 (587)
+++|.+++ +|.. .++|++|++++|.+.+ +|. .+++|++|++++|.+++ ++.. .++
T Consensus 78 l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~--------------lp~---~~~~L~~L~l~~n~l~~-l~~~---~~~ 132 (454)
T 1jl5_A 78 LNNLGLSS-LPEL---PPHLESLVASCNSLTE--------------LPE---LPQSLKSLLVDNNNLKA-LSDL---PPL 132 (454)
T ss_dssp CTTSCCSC-CCSC---CTTCSEEECCSSCCSS--------------CCC---CCTTCCEEECCSSCCSC-CCSC---CTT
T ss_pred ecCCcccc-CCCC---cCCCCEEEccCCcCCc--------------ccc---ccCCCcEEECCCCccCc-ccCC---CCC
Confidence 99999884 3432 3789999999999863 222 23689999999999884 2321 279
Q ss_pred ccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCCccEEeccCCCCccccchhh
Q 045935 205 LKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSL 284 (587)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 284 (587)
|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+. .+++|++++|.+.+ ++ .
T Consensus 133 L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~---------------~lp~~~~--~L~~L~L~~n~l~~-l~-~- 190 (454)
T 1jl5_A 133 LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK---------------KLPDLPP--SLEFIAAGNNQLEE-LP-E- 190 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS---------------CCCCCCT--TCCEEECCSSCCSS-CC-C-
T ss_pred CCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc---------------ccCCCcc--cccEEECcCCcCCc-Cc-c-
Confidence 9999999999995 66 6999999999999999876 2333221 38888888888875 44 2
Q ss_pred hhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccC
Q 045935 285 WKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNML 364 (587)
Q Consensus 285 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~ 364 (587)
+..+++|+.+++.+ |.+.+ +|.. .++|+.|++++|.+
T Consensus 191 ~~~l~~L~~L~l~~---------------------------------------N~l~~-l~~~---~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 191 LQNLPFLTAIYADN---------------------------------------NSLKK-LPDL---PLSLESIVAGNNIL 227 (454)
T ss_dssp CTTCTTCCEEECCS---------------------------------------SCCSS-CCCC---CTTCCEEECCSSCC
T ss_pred ccCCCCCCEEECCC---------------------------------------CcCCc-CCCC---cCcccEEECcCCcC
Confidence 33356666665544 44442 2222 25899999999998
Q ss_pred CCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCcccccccc
Q 045935 365 SSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSL 444 (587)
Q Consensus 365 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l 444 (587)
.. .+ .+..+++|++|++++|.+.+ +|. .+++|++|++++|.+++ .+.. +++|++|++++|.+.+. +. +
T Consensus 228 ~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~-~ 295 (454)
T 1jl5_A 228 EE-LP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE-L 295 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-C
T ss_pred Cc-cc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC-c
Confidence 84 44 47899999999999999884 443 24799999999999986 3332 48999999999998753 21 1
Q ss_pred ccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcc
Q 045935 445 ENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPE 524 (587)
Q Consensus 445 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 524 (587)
.++|++|++++|.+... +. .+.+|+.|++++|.+++ +|.. +++|++|++++|+++ .+|.
T Consensus 296 --~~~L~~L~l~~N~l~~i--------~~-----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~- 354 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRSL--------CD-----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE- 354 (454)
T ss_dssp --CTTCCEEECCSSCCSEE--------CC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-
T ss_pred --CCcCCEEECcCCcCCcc--------cC-----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-
Confidence 27899999999876521 11 12289999999999984 5543 589999999999999 5665
Q ss_pred cCCCCCCceecCCCCcccc--cCChhhcCC-------------CCCccccCCCCcceec
Q 045935 525 LGNLIQLEYLDVSKNMLCG--QIPKKICRL-------------SNLLYLSFEENRFAVL 568 (587)
Q Consensus 525 l~~l~~L~~L~l~~n~l~~--~~~~~l~~l-------------~~L~~L~l~~n~i~~~ 568 (587)
.+++|++|++++|++++ .+|..+..+ ++|++|++++|+++++
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 47899999999999997 678888777 8999999999999874
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.1e-33 Score=284.51 Aligned_cols=196 Identities=18% Similarity=0.168 Sum_probs=128.0
Q ss_pred ccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCC
Q 045935 8 VLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLP 87 (587)
Q Consensus 8 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 87 (587)
.+.+..+..++++++|++|+++++.+. .+| .+..+++|++|++++|.+.+. + +..+++|++|++++|.+++. +
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred CcCcccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence 344555667888888888888888887 456 477888888888888888743 3 77888888888888887743 3
Q ss_pred hhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccc
Q 045935 88 PEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPL 167 (587)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 167 (587)
+.++++|++|++++|++++. + +..+++|++|++++|.+++. .++.+++|++|++++|...+.
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~---------- 163 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITK---------- 163 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCC----------
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccc----------
Confidence 67777888888888777753 2 66777777777777777643 256667777777776643211
Q ss_pred cCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCccc
Q 045935 168 SGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLL 239 (587)
Q Consensus 168 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 239 (587)
+ .+..+++|++|++++|.+++ ++ +..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 164 ---~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 164 ---L--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp ---C--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC
T ss_pred ---c--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc
Confidence 1 13455666666666666653 22 55556666666666655532 244445555555544443
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=282.53 Aligned_cols=300 Identities=20% Similarity=0.200 Sum_probs=175.0
Q ss_pred CCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCc
Q 045935 180 QLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPE 259 (587)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~ 259 (587)
+++.|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.. ..+.
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~ 98 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL--------------IPLG 98 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS--------------CCTT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc--------------cCcc
Confidence 45555555555554444555555666666666665555555555555556655555554430 1111
Q ss_pred ccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCC
Q 045935 260 YLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFN 338 (587)
Q Consensus 260 ~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~ 338 (587)
.+..++ |+.|++++|.+.+..+.. +..+++|+.| ++++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L---------------------------------------~l~~n 138 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSL---------------------------------------EVGDN 138 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEE---------------------------------------EECCT
T ss_pred cccCCCCCCEEECCCCccccCChhH-ccccccCCEE---------------------------------------ECCCC
Confidence 223333 333333333333222211 1223444444 44444
Q ss_pred cccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCc
Q 045935 339 RLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPG 418 (587)
Q Consensus 339 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 418 (587)
.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 44444555666777777777777777655555566677777777777777666666677777777777777665544444
Q ss_pred cccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCc
Q 045935 419 SLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLP 498 (587)
Q Consensus 419 ~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 498 (587)
......+|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+.... +|+.|++++|.+++..+
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~--~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-------IEGSMLHELL--RLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-------ECTTSCTTCT--TCCEEECCSSCCSEECT
T ss_pred ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc-------cChhhccccc--cCCEEECCCCccceECH
Confidence 44445577777777777765444566677777777777765431 1222233333 67777777777766666
Q ss_pred hhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCccc
Q 045935 499 RSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLC 542 (587)
Q Consensus 499 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 542 (587)
..|..+++|++|++++|++++..+..|..+++|++|++++|++.
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 66777777777777777776555555666777777777777665
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-32 Score=280.33 Aligned_cols=200 Identities=14% Similarity=0.068 Sum_probs=150.2
Q ss_pred CEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCC
Q 045935 24 PNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPS 103 (587)
Q Consensus 24 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (587)
+.++.++.++. ++|.+. .+++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 56777777776 677322 25777888888887766677778888888888888877766677778888888888888
Q ss_pred CCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCE
Q 045935 104 CSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDS 183 (587)
Q Consensus 104 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~ 183 (587)
|.++...+..+..+++|++|++++|.+....+..|..+++|++|++++|.+.+. .+..|..+++|++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~ 156 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-------------SHRAFSGLNSLEQ 156 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-------------CTTSSTTCTTCCE
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee-------------ChhhccCCCCCCE
Confidence 877766556677788888888888887767777778888888888888876532 2334566778888
Q ss_pred EeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 184 LLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 184 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
|++++|.+++..+..+.++++|+.|++++|.+....+..|..+++|+.|++++|...
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 888888887666666788888888888888888777777888888888888776543
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-31 Score=270.94 Aligned_cols=349 Identities=19% Similarity=0.221 Sum_probs=254.7
Q ss_pred CcccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEeccc
Q 045935 1 FRYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGIN 80 (587)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 80 (587)
+|+|++|.|++. | .+.++++|++|++++|.+. .++ +..+++|++|++++|.+.+. + +.++++|++|++++|
T Consensus 46 ~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 46 SLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp EEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSS
T ss_pred EEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCC
Confidence 478999999975 5 7999999999999999998 466 88999999999999999854 3 889999999999999
Q ss_pred ccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCc
Q 045935 81 QFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPE 160 (587)
Q Consensus 81 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 160 (587)
.+++ ++ +..+++|++|++++|++++. .+..+++|++|++++|...+.. .+..+++|++|++++|.+.+
T Consensus 117 ~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~---- 184 (457)
T 3bz5_A 117 KLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE---- 184 (457)
T ss_dssp CCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC----
T ss_pred cCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce----
Confidence 9985 44 88999999999999999874 3889999999999999654344 47889999999999999863
Q ss_pred ccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 161 QLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 161 ~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
++ +..+++|+.|++++|.+++. .+..+++|++|++++|.+++ +| +..+++|+.|++++|.++
T Consensus 185 ----------l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 185 ----------LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ----------CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ----------ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 22 56788999999999999854 48899999999999999996 55 778899999999998876
Q ss_pred cccccccccccccccccCcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHh
Q 045935 241 GTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVK 320 (587)
Q Consensus 241 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~ 320 (587)
+ .| +.. ++.|+.+.+..+.+
T Consensus 247 ~---------------~~--~~~------------------------l~~L~~L~l~~n~L------------------- 266 (457)
T 3bz5_A 247 E---------------LD--VST------------------------LSKLTTLHCIQTDL------------------- 266 (457)
T ss_dssp C---------------CC--CTT------------------------CTTCCEEECTTCCC-------------------
T ss_pred C---------------cC--HHH------------------------CCCCCEEeccCCCC-------------------
Confidence 2 11 122 33444444333221
Q ss_pred hcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCC
Q 045935 321 IHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSL 400 (587)
Q Consensus 321 ~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 400 (587)
+.++++.|...+.+| +..+++|+.|++++|...+..+. ..++|+.+++++ ++
T Consensus 267 ----------~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~-------------~~ 318 (457)
T 3bz5_A 267 ----------LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ-------------NP 318 (457)
T ss_dssp ----------SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT-------------CT
T ss_pred ----------CEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhh-------------cc
Confidence 122555555444443 34567777777777765433332 233444444433 35
Q ss_pred CCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhccc
Q 045935 401 KLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVA 480 (587)
Q Consensus 401 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~ 480 (587)
+|++|++++|.+++. .+..+++|++|++++|.+.+ ++.|..|++++|.+. +. ....
T Consensus 319 ~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~-------g~-----~~~~- 374 (457)
T 3bz5_A 319 KLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFE-------AE-----GQTI- 374 (457)
T ss_dssp TCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEE-------EE-----EEEE-
T ss_pred cCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEE-------ec-----ceee-
Confidence 777888888877763 26677788888888877764 245566666664432 11 0111
Q ss_pred ccccEEecccccCccCCchhc
Q 045935 481 WNIATLNLSNNFFDGGLPRSL 501 (587)
Q Consensus 481 ~~L~~L~L~~~~l~~~~~~~~ 501 (587)
.|..+++++|.+++.+|..+
T Consensus 375 -~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 375 -TMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp -ECCCBCCBTTBEEEECCTTC
T ss_pred -ecCccccccCcEEEEcChhH
Confidence 56667777777766555443
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-30 Score=257.93 Aligned_cols=306 Identities=23% Similarity=0.318 Sum_probs=166.4
Q ss_pred ccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCc
Q 045935 17 IGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLL 96 (587)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 96 (587)
+.++++|++|+++++.+. .++ .+..+++|++|++++|.+.. .+. +..+++|++|++++|.+++ + ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred chhcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 445566666666666665 444 25556666666666665552 222 5556666666666655542 2 235555555
Q ss_pred cEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccc
Q 045935 97 EIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFG 176 (587)
Q Consensus 97 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~ 176 (587)
++|++++|.+++.. .+..+++|++|++++|..... ...+ .
T Consensus 113 ~~L~l~~n~i~~~~--~~~~l~~L~~L~l~~n~~~~~-~~~~-------------------------------------~ 152 (347)
T 4fmz_A 113 RELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSD-LSPL-------------------------------------S 152 (347)
T ss_dssp SEEECTTSCCCCCG--GGTTCTTCCEEECTTCTTCCC-CGGG-------------------------------------T
T ss_pred CEEECcCCcccCch--hhccCCceeEEECCCCCCccc-ccch-------------------------------------h
Confidence 55555555544321 144444444444444432211 1223 4
Q ss_pred cCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccc
Q 045935 177 KWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGS 256 (587)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~ 256 (587)
.+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|+.+++++|.+..
T Consensus 153 ~l~~L~~L~l~~~~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--------------- 213 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDV-T-PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--------------- 213 (347)
T ss_dssp TCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC---------------
T ss_pred hCCCCcEEEecCCCcCCc-h-hhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC---------------
Confidence 445555555555555422 1 14555566666666665553222 4455555555555554331
Q ss_pred cCcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEcc
Q 045935 257 IPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLS 336 (587)
Q Consensus 257 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~ 336 (587)
.+. +..+++|+.+++.+|.
T Consensus 214 -----------------------~~~--~~~~~~L~~L~l~~n~------------------------------------ 232 (347)
T 4fmz_A 214 -----------------------ITP--VANMTRLNSLKIGNNK------------------------------------ 232 (347)
T ss_dssp -----------------------CGG--GGGCTTCCEEECCSSC------------------------------------
T ss_pred -----------------------Cch--hhcCCcCCEEEccCCc------------------------------------
Confidence 000 1113333333333222
Q ss_pred CCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCC
Q 045935 337 FNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSI 416 (587)
Q Consensus 337 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 416 (587)
+.+.. . +..+++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..
T Consensus 233 ---l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 233 ---ITDLS-P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp ---CCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGG
T ss_pred ---cCCCc-c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcC
Confidence 22111 1 44556666677766666543 3456667777777777777643 35667777888888888777666
Q ss_pred CccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCcc
Q 045935 417 PGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKL 460 (587)
Q Consensus 417 ~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i 460 (587)
+..+..+++|++|++++|.+.+..+ +..+++|++|++++|++
T Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp HHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred hhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 6777777888888888887775543 66777777777777654
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1e-30 Score=258.10 Aligned_cols=170 Identities=28% Similarity=0.379 Sum_probs=84.9
Q ss_pred CcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 045935 352 TVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNL 431 (587)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L 431 (587)
++|+.|++++|.+....+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 177 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 250 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250 (347)
T ss_dssp TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence 444444444444432221 3444555555555555543221 4445555555555555543222 445555566666
Q ss_pred CCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEE
Q 045935 432 TGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVD 511 (587)
Q Consensus 432 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 511 (587)
++|.+.+. ..+..+++|++|++++| .+++ . ..+..+++|++|+
T Consensus 251 ~~n~l~~~--~~~~~l~~L~~L~l~~n---------------------------------~l~~-~-~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 251 GTNQISDI--NAVKDLTKLKMLNVGSN---------------------------------QISD-I-SVLNNLSQLNSLF 293 (347)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSS---------------------------------CCCC-C-GGGGGCTTCSEEE
T ss_pred CCCccCCC--hhHhcCCCcCEEEccCC---------------------------------ccCC-C-hhhcCCCCCCEEE
Confidence 55555432 23444455555555444 3331 1 2345555666666
Q ss_pred ccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcce
Q 045935 512 LHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFA 566 (587)
Q Consensus 512 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 566 (587)
+++|++++..+..+.++++|++|++++|++++..| +..+++|++|++++|+|+
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 66666655555555566666666666666654333 555666666666666554
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-30 Score=259.75 Aligned_cols=135 Identities=17% Similarity=0.150 Sum_probs=78.6
Q ss_pred CCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCcee
Q 045935 68 NLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSV 147 (587)
Q Consensus 68 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 147 (587)
.++++++|+++++.++...+..+..+++|++|++++|.+++..+.++..+++|++|++++|.+++..+..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35677777777777664333445667777777777777766555566666666666666666665555556666666666
Q ss_pred ecccccCCCCCCcccCCccccCCCCcc-cccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccc
Q 045935 148 LLSFNALPGSLPEQLSELPLSGPLPSW-FGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVS 216 (587)
Q Consensus 148 ~L~~n~~~~~~~~~l~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 216 (587)
++++|.+. .+|.. |.++++|++|++++|.+++..+..+.++++|++|++++|.++
T Consensus 123 ~L~~n~l~--------------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 123 VLERNDLS--------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCC--------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCccC--------------cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 66666543 11111 344455555555555555444444555555555555555444
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.8e-30 Score=260.43 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=113.4
Q ss_pred ccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccE
Q 045935 19 ELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEI 98 (587)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 98 (587)
.++++++++++++.+. .+|...|.++++|++|++++|.+....+..|..+++|++|++++|.+++..|..+.++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4577777888777776 677666777778888888877777666667777777777777777777665666777777777
Q ss_pred EecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccC
Q 045935 99 FSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKW 178 (587)
Q Consensus 99 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~ 178 (587)
|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+..+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~l 185 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------------DLSLI 185 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----------------CGGGC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----------------ccccc
Confidence 77777777644444456677777777777776655555666666666666666665421 12344
Q ss_pred CCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccc
Q 045935 179 NQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVS 216 (587)
Q Consensus 179 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 216 (587)
++|+.|++++|.++. +...++|++|++++|.++
T Consensus 186 ~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 186 PSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN 218 (390)
T ss_dssp TTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC
T ss_pred cccceeecccccccc-----cCCCCcceEEECCCCeee
Confidence 555555555555441 222334555555555444
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5e-30 Score=271.22 Aligned_cols=135 Identities=14% Similarity=0.207 Sum_probs=86.7
Q ss_pred cCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEE
Q 045935 20 LTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIF 99 (587)
Q Consensus 20 ~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 99 (587)
+++++.++++++.+. .+|...|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456677777777666 5665666667777777777777665555666677777777777776665555556666666666
Q ss_pred ecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCC
Q 045935 100 SSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALP 155 (587)
Q Consensus 100 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~ 155 (587)
++++|.++...+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 66666666444444566666666666666666555555666666666666666543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-29 Score=265.42 Aligned_cols=309 Identities=21% Similarity=0.151 Sum_probs=156.2
Q ss_pred CCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceee
Q 045935 69 LKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVL 148 (587)
Q Consensus 69 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 148 (587)
+++++.++++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45666666666666544334455666666666666666655555566666666666666666555555555555555555
Q ss_pred cccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCC
Q 045935 149 LSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSES 228 (587)
Q Consensus 149 L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 228 (587)
+++|.+.+. .+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++.. +..+++
T Consensus 130 L~~n~l~~l-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~ 193 (597)
T 3oja_B 130 LERNDLSSL-------------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPS 193 (597)
T ss_dssp CCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTT
T ss_pred eeCCCCCCC-------------CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhh
Confidence 555554311 0111334445555555555554444444444555555555544444221 122233
Q ss_pred CcEEEcCCcccccccccccccccccccccCcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeeccccc
Q 045935 229 LVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWE 308 (587)
Q Consensus 229 L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 308 (587)
|+.|++++|.+. +
T Consensus 194 L~~L~l~~n~l~-------------------------------------~------------------------------ 206 (597)
T 3oja_B 194 LFHANVSYNLLS-------------------------------------T------------------------------ 206 (597)
T ss_dssp CSEEECCSSCCS-------------------------------------E------------------------------
T ss_pred hhhhhcccCccc-------------------------------------c------------------------------
Confidence 333333333221 0
Q ss_pred ccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcC
Q 045935 309 IGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388 (587)
Q Consensus 309 ~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 388 (587)
+...+.|+.|++++|.+....... .++|+.|++++|.+
T Consensus 207 ---------------------------------------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l 244 (597)
T 3oja_B 207 ---------------------------------------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNL 244 (597)
T ss_dssp ---------------------------------------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCC
T ss_pred ---------------------------------------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCC
Confidence 011123444444444443222111 14566666666666
Q ss_pred CCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCcccccccccc
Q 045935 389 AGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLS 468 (587)
Q Consensus 389 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 468 (587)
++ +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ++..+..+++|++|++++|.+.
T Consensus 245 ~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~------- 314 (597)
T 3oja_B 245 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL------- 314 (597)
T ss_dssp CC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-------
T ss_pred CC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-------
Confidence 53 2455666666666666666666666666666677777777766653 3444445556666666655443
Q ss_pred ccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccc
Q 045935 469 GPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFT 518 (587)
Q Consensus 469 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~ 518 (587)
.++..+.... +|+.|++++|.+... + +..+++|+.|++++|++.
T Consensus 315 -~i~~~~~~l~--~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 315 -HVERNQPQFD--RLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp -CCGGGHHHHT--TCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred -ccCcccccCC--CCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 1122222222 455555555554422 1 444555666666665554
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.1e-28 Score=239.52 Aligned_cols=198 Identities=20% Similarity=0.224 Sum_probs=168.6
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
++++++++++.+. .+|.. + .+++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 7899999999998 78833 3 378999999999999777778999999999999999999777899999999999999
Q ss_pred CCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCC
Q 045935 102 PSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQL 181 (587)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L 181 (587)
++|.++. +|..+. ++|++|++++|.++...+..+..+++|++|++++|.+.. .+..+..+..+++|
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-----------SGIENGAFQGMKKL 173 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----------GGBCTTGGGGCTTC
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-----------cCcChhhccCCCCc
Confidence 9999884 444443 799999999999997777789999999999999998752 12335567889999
Q ss_pred CEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 182 DSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 182 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
++|++++|.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 174 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 174 SYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 999999999984 554443 89999999999999888889999999999999888765
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.2e-28 Score=239.38 Aligned_cols=269 Identities=21% Similarity=0.228 Sum_probs=148.7
Q ss_pred CCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccC
Q 045935 179 NQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIP 258 (587)
Q Consensus 179 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~ 258 (587)
++++.|++++|.+++..+..+.++++|++|++++|.+++..|.+|..+++|++|++++|.+. .+|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------------~l~ 116 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK---------------ELP 116 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS---------------BCC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC---------------ccC
Confidence 45666666666666555556666777777777777666555666666666666666666544 111
Q ss_pred cccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCC
Q 045935 259 EYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFN 338 (587)
Q Consensus 259 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~ 338 (587)
..+. -.+++|++++|.
T Consensus 117 ~~~~-~~L~~L~l~~n~--------------------------------------------------------------- 132 (330)
T 1xku_A 117 EKMP-KTLQELRVHENE--------------------------------------------------------------- 132 (330)
T ss_dssp SSCC-TTCCEEECCSSC---------------------------------------------------------------
T ss_pred hhhc-ccccEEECCCCc---------------------------------------------------------------
Confidence 1111 012233333222
Q ss_pred cccccCCCCcCCCCcccEEEccCccCCC--CCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCC
Q 045935 339 RLSCPIPEDLGNCTVVVYLLLSNNMLSS--KIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSI 416 (587)
Q Consensus 339 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 416 (587)
+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..
T Consensus 133 -l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 133 -ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVD 208 (330)
T ss_dssp -CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred -ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccC
Confidence 222222233444555555555555432 23344455555666666655554 2232221 45556666655555544
Q ss_pred CccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccC
Q 045935 417 PGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGG 496 (587)
Q Consensus 417 ~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~ 496 (587)
+..+..+++|++|++++|.+.+..+..+..+++|++|+++ +|.++ .
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~---------------------------------~N~l~-~ 254 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN---------------------------------NNKLV-K 254 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC---------------------------------SSCCS-S
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC---------------------------------CCcCc-c
Confidence 5555555566666666655554444344444444444444 44444 4
Q ss_pred CchhccCCCCCcEEEccCcccccCCCcccCC------CCCCceecCCCCcccc--cCChhhcCCCCCccccCCCCc
Q 045935 497 LPRSLSNLSYLTSVDLHRNKFTGEIPPELGN------LIQLEYLDVSKNMLCG--QIPKKICRLSNLLYLSFEENR 564 (587)
Q Consensus 497 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~------l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~ 564 (587)
+|..+..+++|++|++++|++++..+..|.. .+.++.|++++|++.. ..|..|..+..++.+++++|+
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 5556667777777777777777555445432 3678888888888753 456778888888888888874
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1e-33 Score=291.31 Aligned_cols=112 Identities=22% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCCcccEEEccCccCCCCCCCCC-----cCCCCCCeEecCCCcCCCC----CCcCccCCCCCcEEEccCcccccCCCccc
Q 045935 350 NCTVVVYLLLSNNMLSSKIPGSR-----SRLTNLTILDLSRNELAGS----IPPEFGDSLKLQGLFLGNNQLTDSIPGSL 420 (587)
Q Consensus 350 ~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 420 (587)
.+++|++|++++|.+.+..+..+ ...++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH
Confidence 34455555555555432211111 1224566666666665533 22334445666666666666554333222
Q ss_pred cC-----CCCCcEEEcCCCcCcc----ccccccccCCCCceeeccCCccc
Q 045935 421 GR-----LGGLVKLNLTGNKLSG----LVPTSLENLKGLTHLDLSYNKLD 461 (587)
Q Consensus 421 ~~-----~~~L~~L~L~~~~l~~----~~~~~l~~~~~L~~L~l~~~~i~ 461 (587)
.. .++|++|++++|.+++ ..+.++..+++|++|++++|+++
T Consensus 362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 21 4566666666666653 34445555666666666665543
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7.8e-33 Score=284.69 Aligned_cols=87 Identities=21% Similarity=0.092 Sum_probs=44.3
Q ss_pred cccEEecccccCccCCchhccC-----CCCCcEEEccCccccc----CCCcccCCCCCCceecCCCCcccccCChh----
Q 045935 482 NIATLNLSNNFFDGGLPRSLSN-----LSYLTSVDLHRNKFTG----EIPPELGNLIQLEYLDVSKNMLCGQIPKK---- 548 (587)
Q Consensus 482 ~L~~L~L~~~~l~~~~~~~~~~-----~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---- 548 (587)
+|+.|++++|.+++..+..+.. .++|++|++++|++++ .++..+..+++|++|++++|++.+.....
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~ 421 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHH
Confidence 5555555555554332222221 4566666666666654 34555556666666666666665421111
Q ss_pred hc-CCCCCccccCCCCcceec
Q 045935 549 IC-RLSNLLYLSFEENRFAVL 568 (587)
Q Consensus 549 l~-~l~~L~~L~l~~n~i~~~ 568 (587)
+. ....|+.|++.++.+...
T Consensus 422 l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 422 VRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp HTSTTCCCCEEECTTCCCCHH
T ss_pred hccCCcchhheeecccccCHH
Confidence 11 123455555555555443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.6e-28 Score=237.25 Aligned_cols=197 Identities=19% Similarity=0.240 Sum_probs=131.8
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
++++++++++.+. .+|... .++|++|++++|.+....+..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5788888888877 777332 367888888888877666677888888888888888777666777778888888888
Q ss_pred CCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCC
Q 045935 102 PSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQL 181 (587)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L 181 (587)
++|.++ .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.+.. .+..+..+..+ +|
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-----------SGFEPGAFDGL-KL 174 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-----------GGSCTTSSCSC-CC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-----------CCCCcccccCC-cc
Confidence 888776 3444433 677888888777775555667777777777777777641 11223334444 67
Q ss_pred CEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 182 DSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 182 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
++|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 175 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 175 NYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp SCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred CEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 777777777663 343332 56666666666666555555655566665555555433
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.2e-29 Score=245.58 Aligned_cols=249 Identities=26% Similarity=0.386 Sum_probs=201.1
Q ss_pred CCCCEEeCCCCcCCC--CcCcccccCCCCCcEEEccC-CccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCcc
Q 045935 21 TQLPNLLLGNNLLSG--SLPVSLFTNLQSLSHLDVSN-NSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLE 97 (587)
Q Consensus 21 ~~L~~L~l~~~~~~~--~i~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 97 (587)
.++++|+++++.+.+ .+| ..|.++++|++|++++ |.+.+..|..|.++++|++|++++|.+++.+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578888888888887 677 6778888888888885 788778888888888888888888888878888888888888
Q ss_pred EEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCC-CCceeecccccCCCCCCcccCCccccCCCCcccc
Q 045935 98 IFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCE-NLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFG 176 (587)
Q Consensus 98 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~ 176 (587)
+|++++|.+++.+|..+..+++|++|++++|++++..+..+..++ +|++|++++|.+.+ .+|..+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-------------~~~~~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-------------KIPPTFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-------------ECCGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-------------cCChHHh
Confidence 888888888888888888888888888888888877888888887 88888888888653 3344455
Q ss_pred cCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccc
Q 045935 177 KWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGS 256 (587)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~ 256 (587)
.++ |++|++++|.+++..+..+..+++|++|++++|.+++..+. +..+++|++|++++|.+.+ .
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~--------------~ 259 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG--------------T 259 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE--------------C
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC--------------c
Confidence 555 88888888888877788888888888888888888755554 6777888888888877653 4
Q ss_pred cCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccce
Q 045935 257 IPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLL 301 (587)
Q Consensus 257 ~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 301 (587)
.|..+..++ |+.|++++|.+++.+|.. ..+++|+.+++.+|..
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSE
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCCC
Confidence 566777777 888888888888877765 4478899999988863
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=6.2e-28 Score=236.29 Aligned_cols=287 Identities=18% Similarity=0.181 Sum_probs=162.5
Q ss_pred CCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecc
Q 045935 71 NLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLS 150 (587)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~ 150 (587)
++++++++++.++ .+|..+ .++|++|++++|.+++..+.++..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3444444444443 333322 1345555555555554444455555555555555555554445555556666666666
Q ss_pred cccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCcccc--ccCccccCCCC
Q 045935 151 FNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSG--SIPRELCNSES 228 (587)
Q Consensus 151 ~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~ 228 (587)
+|.+. .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.++. ..+..+..+ +
T Consensus 111 ~n~l~--------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 111 KNHLV--------------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp SSCCC--------------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred CCcCC--------------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 66543 1111111 466666666666664444456666677777776666642 344444444 5
Q ss_pred CcEEEcCCcccccccccccccccccccccCcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceeeccccc
Q 045935 229 LVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWE 308 (587)
Q Consensus 229 L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 308 (587)
|++|++++|.+. .+|..+ .++|++|
T Consensus 174 L~~L~l~~n~l~--------------------------------------~l~~~~---~~~L~~L-------------- 198 (332)
T 2ft3_A 174 LNYLRISEAKLT--------------------------------------GIPKDL---PETLNEL-------------- 198 (332)
T ss_dssp CSCCBCCSSBCS--------------------------------------SCCSSS---CSSCSCC--------------
T ss_pred cCEEECcCCCCC--------------------------------------ccCccc---cCCCCEE--------------
Confidence 555555555433 111111 1233333
Q ss_pred ccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcC
Q 045935 309 IGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNEL 388 (587)
Q Consensus 309 ~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 388 (587)
++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus 199 -------------------------~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 199 -------------------------HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp -------------------------BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred -------------------------ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 4444444444445566667777777777777666656666777777777777777
Q ss_pred CCCCCcCccCCCCCcEEEccCcccccCCCccccC------CCCCcEEEcCCCcCc--cccccccccCCCCceeeccCC
Q 045935 389 AGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGR------LGGLVKLNLTGNKLS--GLVPTSLENLKGLTHLDLSYN 458 (587)
Q Consensus 389 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~------~~~L~~L~L~~~~l~--~~~~~~l~~~~~L~~L~l~~~ 458 (587)
. .+|..+..+++|++|++++|.+++..+..+.. .+.|+.|++++|.+. ...+.++..+++|+.+++++|
T Consensus 254 ~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 254 S-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp C-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred e-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6 56666777777777777777777655554433 356778888887765 455666777777777777765
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.7e-28 Score=237.61 Aligned_cols=242 Identities=26% Similarity=0.433 Sum_probs=185.5
Q ss_pred CCCcEEEccCCcccc--CCCCCcCCCCCCcEEEecc-cccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcE
Q 045935 46 QSLSHLDVSNNSLYG--SFPPEIGNLKNLTHFFLGI-NQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGI 122 (587)
Q Consensus 46 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 122 (587)
.++++|+++++.+.+ .+|..|.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 568888888888876 6777888888888888885 7777777888888888888888888888777888888888888
Q ss_pred EEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCC-CCCEEeCCCCccCCCCCccccC
Q 045935 123 LNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWN-QLDSLLLSSNQFVGRIPPEIGS 201 (587)
Q Consensus 123 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~ 201 (587)
|++++|.+++..+..+..+++|++|++++|.+.+ .+|..+..++ +|++|++++|++++..|..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-------------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 8888888887777888888888888888888643 3444555665 7888888888887777777777
Q ss_pred CCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCcccc
Q 045935 202 CSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGII 280 (587)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 280 (587)
++ |++|++++|.+++..+..+..+++|+.|++++|.+.+ .+..+..++ |++|++++|.+++.+
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF---------------DLGKVGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC---------------BGGGCCCCTTCCEEECCSSCCEECC
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee---------------ecCcccccCCCCEEECcCCcccCcC
Confidence 76 8888888888887777778888888888888887652 222245556 888888888888777
Q ss_pred chhhhhcCCccceecccccceeecccccccchhhhHHH
Q 045935 281 PLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERL 318 (587)
Q Consensus 281 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l 318 (587)
|..+.. +++|++|++++|.+.+.+|.. ..++.++.+
T Consensus 261 p~~l~~-l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 261 PQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp CGGGGG-CTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred ChHHhc-CcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 766554 788888888888888777765 555555555
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.4e-29 Score=269.12 Aligned_cols=233 Identities=14% Similarity=0.081 Sum_probs=127.1
Q ss_pred ccccCCCCCcEEEccCCccc---cCCCCCcC------------CCCCCcEEEecccccccCCChhhhc-CCC-ccEEecC
Q 045935 40 SLFTNLQSLSHLDVSNNSLY---GSFPPEIG------------NLKNLTHFFLGINQFTGQLPPEIGE-LSL-LEIFSSP 102 (587)
Q Consensus 40 ~~~~~l~~L~~L~l~~~~~~---~~~~~~~~------------~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~ 102 (587)
..+.++++|++|+++++... +..|..+. .+++|++|++++|.+++..+..+.. ++. |++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 45556666666666654321 12222221 5667777777777665444444444 333 7777776
Q ss_pred CCC-CccC-CccccccCCCCcEEEeccccCcccCC----ccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccc
Q 045935 103 SCS-ITGP-LPEELSNYGSSGILNLGSTQLNGSIP----AELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFG 176 (587)
Q Consensus 103 ~~~-~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~ 176 (587)
+|. ++.. ++.....+++|++|++++|.+++... ..+..+++|++|++++|.+.+..+. .++..+.
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~---------~l~~~~~ 217 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK---------DLETIAR 217 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH---------HHHHHHH
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH---------HHHHHHh
Confidence 665 2211 11223356777777777776654422 2334567777777777765422111 1222344
Q ss_pred cCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccc---cccCccccCCCCCcEEEcCCccccccccccccccccc
Q 045935 177 KWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVS---GSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHI 253 (587)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~ 253 (587)
++++|++|++++|.+.+ .+..+.++++|++|+++..... ...+..+..+++|+.+.++++...
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------------- 283 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN------------- 283 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-------------
T ss_pred hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-------------
Confidence 66777777777776663 4556666777777777643221 223344555667777766654322
Q ss_pred ccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceeccc
Q 045935 254 HGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAA 297 (587)
Q Consensus 254 ~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 297 (587)
.+|..+..++ |++|++++|.+++.....+...+++|+.|++.
T Consensus 284 --~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 284 --EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp --TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred --HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 3444455555 66666666665543333334446666666665
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-26 Score=225.88 Aligned_cols=225 Identities=23% Similarity=0.316 Sum_probs=174.1
Q ss_pred cCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEE
Q 045935 20 LTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIF 99 (587)
Q Consensus 20 ~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 99 (587)
.+++++|+++++.+. .+| ..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 477888888888887 777 44566888888888888887 77777888888888888888877 677778888888888
Q ss_pred ecCCCCCccCCcccccc---------CCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCC
Q 045935 100 SSPSCSITGPLPEELSN---------YGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGP 170 (587)
Q Consensus 100 ~l~~~~~~~~~~~~l~~---------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~ 170 (587)
++++|++.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+. .
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~--------------~ 220 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS--------------A 220 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC--------------C
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC--------------c
Confidence 88887777777766554 788888888888887 66777888888888888888765 3
Q ss_pred CCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccc
Q 045935 171 LPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGN 250 (587)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~ 250 (587)
+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~---------- 290 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL---------- 290 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC----------
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch----------
Confidence 4445667788888888888877777777888888888888888777778888888888888888777654
Q ss_pred cccccccCcccCCCC-ccEEeccCCCCc
Q 045935 251 NHIHGSIPEYLSELP-LVVLDLDSNNFT 277 (587)
Q Consensus 251 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~ 277 (587)
+.+|..+..++ ++.+.+..+.+.
T Consensus 291 ----~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 291 ----SRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ----CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ----hhccHHHhhccCceEEeCCHHHHH
Confidence 35677777777 888877766554
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=5.2e-30 Score=272.29 Aligned_cols=431 Identities=14% Similarity=0.080 Sum_probs=244.2
Q ss_pred CcCCCCCCcEEEecccccc---cCCChh------------hhcCCCccEEecCCCCCccCCcccccc-CCC-CcEEEecc
Q 045935 65 EIGNLKNLTHFFLGINQFT---GQLPPE------------IGELSLLEIFSSPSCSITGPLPEELSN-YGS-SGILNLGS 127 (587)
Q Consensus 65 ~~~~l~~L~~L~l~~~~~~---~~~~~~------------~~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~-L~~L~l~~ 127 (587)
.+..+++|++|+++++... +.+|.. ...+++|++|++++|.+++..+..+.. ++. |++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 3456788888888776321 111111 126778888888887776655555554 333 88888877
Q ss_pred cc-Cccc-CCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCC----CCCccccC
Q 045935 128 TQ-LNGS-IPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVG----RIPPEIGS 201 (587)
Q Consensus 128 ~~-~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~ 201 (587)
|. ++.. .+.....+++|++|++++|.+.+..+.. ++..+..+++|++|+++++.+++ .++..+.+
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~---------l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW---------LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH---------HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH---------HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 75 2211 2222346778888888887754321110 11223466788888888777752 22333456
Q ss_pred CCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCcccc
Q 045935 202 CSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGII 280 (587)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 280 (587)
+++|++|++++|.+. ..+..+..+++|++|.++....... ....+..+..++ ++.+++.++... .+
T Consensus 219 ~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~-----------~~~~~~~l~~~~~L~~L~l~~~~~~-~l 285 (592)
T 3ogk_B 219 CRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIG-----------MPEKYMNLVFPRKLCRLGLSYMGPN-EM 285 (592)
T ss_dssp CTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTT-----------CTTSSSCCCCCTTCCEEEETTCCTT-TG
T ss_pred CCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccc-----------hHHHHHHhhccccccccCccccchh-HH
Confidence 778888888887776 3556667777788877765321100 001222333334 555555543211 22
Q ss_pred chhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCC-CCcCCCCcccEEEc
Q 045935 281 PLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIP-EDLGNCTVVVYLLL 359 (587)
Q Consensus 281 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~-~~~~~~~~L~~L~l 359 (587)
+. ++..+++|++| ++++|.+..... ..+..+++|+.|++
T Consensus 286 ~~-~~~~~~~L~~L---------------------------------------~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 286 PI-LFPFAAQIRKL---------------------------------------DLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp GG-GGGGGGGCCEE---------------------------------------EETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred HH-HHhhcCCCcEE---------------------------------------ecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 22 12224444444 444444322111 22456788888888
Q ss_pred cCccCCCCCCCCCcCCCCCCeEecCC-----------CcCCCCCCcC-ccCCCCCcEEEccCcccccCCCccccC-CCCC
Q 045935 360 SNNMLSSKIPGSRSRLTNLTILDLSR-----------NELAGSIPPE-FGDSLKLQGLFLGNNQLTDSIPGSLGR-LGGL 426 (587)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~i~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~L 426 (587)
.++......+.....+++|++|++++ +.+++..... ...+++|++|++..+.+++.....+.. +++|
T Consensus 326 ~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L 405 (592)
T 3ogk_B 326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL 405 (592)
T ss_dssp EGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSC
T ss_pred cCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCC
Confidence 83322212222334577888888883 3343221112 344788888888777776555555544 7888
Q ss_pred cEEEcC----CCcCccc-----cccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCcc-C
Q 045935 427 VKLNLT----GNKLSGL-----VPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDG-G 496 (587)
Q Consensus 427 ~~L~L~----~~~l~~~-----~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-~ 496 (587)
++|+++ .+.+++. .+..+..+++|++|++++|.- .+.+.....+... .++|+.|++++|.+++ .
T Consensus 406 ~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~-----~l~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG-----GLTDLGLSYIGQY-SPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG-----GCCHHHHHHHHHS-CTTCCEEEECSCCSSHHH
T ss_pred cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC-----CccHHHHHHHHHh-CccceEeeccCCCCCHHH
Confidence 888886 4445532 222356688888888876431 1122222222221 1278888888888765 3
Q ss_pred CchhccCCCCCcEEEccCcccccC-CCcccCCCCCCceecCCCCcccccCChhh-cCCCCCccccCCCC
Q 045935 497 LPRSLSNLSYLTSVDLHRNKFTGE-IPPELGNLIQLEYLDVSKNMLCGQIPKKI-CRLSNLLYLSFEEN 563 (587)
Q Consensus 497 ~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n 563 (587)
.+..+..+++|++|++++|++++. ++.....+++|++|++++|++++.....+ ..+|.++...+..+
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 344557778888888888887643 33344567888888888888775443333 35676666655554
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=7.9e-26 Score=216.28 Aligned_cols=223 Identities=20% Similarity=0.190 Sum_probs=194.4
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccc
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQ 81 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (587)
++.+++.++ .+|..+ .++|++|+++++.+. .++...|.++++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 16 ~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 456667777 455544 579999999999998 6776789999999999999999997788899999999999999997
Q ss_pred -cccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCc
Q 045935 82 -FTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPE 160 (587)
Q Consensus 82 -~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 160 (587)
+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++...+..++.+++|++|++++|.+.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 168 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV--- 168 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE---
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc---
Confidence 7766678899999999999999999988888899999999999999999977777789999999999999987622
Q ss_pred ccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 161 QLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 161 ~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
.+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 169 ----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 169 ----------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ----------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 1234677899999999999999888889999999999999999999766677889999999999999887
Q ss_pred c
Q 045935 241 G 241 (587)
Q Consensus 241 ~ 241 (587)
.
T Consensus 239 c 239 (285)
T 1ozn_A 239 C 239 (285)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.6e-26 Score=221.18 Aligned_cols=206 Identities=20% Similarity=0.162 Sum_probs=108.7
Q ss_pred CCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccC--CCCCcCCCCCCcEEEecccccccCCChhhhcCCCccE
Q 045935 21 TQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGS--FPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEI 98 (587)
Q Consensus 21 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 98 (587)
++|++|++++|.+. .+|.+.|.++++|++|++++|.+... .+..+..+++|++|++++|.+. .++..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 45556666666555 45544555556666666665555411 1333444555566666555555 34444555555555
Q ss_pred EecCCCCCccCCc-cccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCccccc
Q 045935 99 FSSPSCSITGPLP-EELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGK 177 (587)
Q Consensus 99 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~ 177 (587)
|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+|..+..
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~~ 173 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN------------FLPDIFTE 173 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG------------EECSCCTT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc------------cchhHHhh
Confidence 5555555554332 3455555555555555555544555555555555555555554310 12333445
Q ss_pred CCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 178 WNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 555555555555555444555555555555555555555444444555555555555555443
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.3e-25 Score=218.63 Aligned_cols=221 Identities=18% Similarity=0.229 Sum_probs=103.4
Q ss_pred CCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEe
Q 045935 46 QSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNL 125 (587)
Q Consensus 46 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 125 (587)
+++++|++++|.+. .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 44455555555444 44444444555555555555444 44444455555555555555444 34444455555555555
Q ss_pred ccccCcccCCccccC---------CCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCC
Q 045935 126 GSTQLNGSIPAELGK---------CENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIP 196 (587)
Q Consensus 126 ~~~~~~~~~~~~l~~---------l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 196 (587)
++|.+.+..|..+.. +++|++|++++|.+. .+|..+.++++|++|++++|.++ .+|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--------------~lp~~l~~l~~L~~L~L~~N~l~-~l~ 222 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--------------SLPASIANLQNLKSLKIRNSPLS-ALG 222 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--------------CCCGGGGGCTTCCEEEEESSCCC-CCC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--------------cchHhhcCCCCCCEEEccCCCCC-cCc
Confidence 554444344433322 445555555554433 22333444445555555555544 233
Q ss_pred ccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCC
Q 045935 197 PEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNN 275 (587)
Q Consensus 197 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~ 275 (587)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..++ |+.|++++|.
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~--------------~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL--------------TLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC--------------BCCTTGGGCTTCCEEECTTCT
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh--------------hcchhhhcCCCCCEEeCCCCC
Confidence 344445555555555544444444444445555555554443321 3333444444 5555555554
Q ss_pred CccccchhhhhcCCccceeccccc
Q 045935 276 FTGIIPLSLWKNSKNLIEFSAASN 299 (587)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~l~l~~~ 299 (587)
+.+.+|..+.. ++.++.+.+..+
T Consensus 289 ~~~~iP~~l~~-L~~L~~l~l~~~ 311 (328)
T 4fcg_A 289 NLSRLPSLIAQ-LPANCIILVPPH 311 (328)
T ss_dssp TCCCCCGGGGG-SCTTCEEECCGG
T ss_pred chhhccHHHhh-ccCceEEeCCHH
Confidence 44444444433 444444444433
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=3.6e-26 Score=225.78 Aligned_cols=274 Identities=15% Similarity=0.171 Sum_probs=180.8
Q ss_pred ccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEeccccc
Q 045935 3 YLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQF 82 (587)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (587)
+++++.++ .+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+.+..+..|.++++|++|++++|.+
T Consensus 37 ~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 37 KGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp ECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 44556666 4555443 47777777777776 56655677777777777777777766666777777777777777777
Q ss_pred ccCCChhhhcCCCccEEecCCCCCccCCc-cccccCCCCcEEEecccc-CcccCCccccCCCCCceeecccccCCCCCCc
Q 045935 83 TGQLPPEIGELSLLEIFSSPSCSITGPLP-EELSNYGSSGILNLGSTQ-LNGSIPAELGKCENLKSVLLSFNALPGSLPE 160 (587)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 160 (587)
++..+..+.++++|++|++++|.++.... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 189 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY--- 189 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE---
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc---
Confidence 74433446777777777777777764333 356777777777777773 5545556677777777777777775432
Q ss_pred ccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCcccc---CCCCCcEEEcCCc
Q 045935 161 QLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELC---NSESLVEINLDGN 237 (587)
Q Consensus 161 ~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~ 237 (587)
.+..+..+++|++|++++|.++......+..+++|++|++++|.+++..+..+. ....++.++++++
T Consensus 190 ----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 190 ----------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp ----------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred ----------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 234455667777777777776533222344567777777777777654443332 2445666666665
Q ss_pred ccccccccccccccccccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeec
Q 045935 238 LLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGY 304 (587)
Q Consensus 238 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 304 (587)
.+.+ +.+. .+|..+..++ |+.|++++|.++ .+|..++..+++|+++++.+|.+.+.
T Consensus 260 ~l~~---------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 260 KITD---------ESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp BCCH---------HHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccC---------cchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 5442 1222 3556677777 899999999888 67777666688999999998877654
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.8e-25 Score=216.32 Aligned_cols=225 Identities=22% Similarity=0.166 Sum_probs=197.8
Q ss_pred CcccCCCccccccCccccccCCCCEEeCCCCcCCCCc---CcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEe
Q 045935 1 FRYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSL---PVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFL 77 (587)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 77 (587)
+|+|++|.|++..+..|.++++|++|++++|.+. .+ + ..+..+++|++|++++|.+. .++..+..+++|++|++
T Consensus 32 ~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCS-QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEE-HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEEC
T ss_pred EEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcc-cccccccccCEEECCCCccc-cChhhcCCCCCCCEEEC
Confidence 3789999999666667899999999999999987 33 4 45667999999999999988 56777899999999999
Q ss_pred cccccccCCC-hhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcc-cCCccccCCCCCceeecccccCC
Q 045935 78 GINQFTGQLP-PEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNG-SIPAELGKCENLKSVLLSFNALP 155 (587)
Q Consensus 78 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~~~ 155 (587)
++|.+++..+ ..+..+++|++|++++|.++...+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+.
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 9999985544 578999999999999999998888889999999999999999986 57888999999999999999976
Q ss_pred CCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCC-CCcEEEc
Q 045935 156 GSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSE-SLVEINL 234 (587)
Q Consensus 156 ~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l 234 (587)
+. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++ +|++|++
T Consensus 189 ~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 189 QL-------------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp EE-------------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred Cc-------------CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 32 245577889999999999999977777889999999999999999988898998885 9999999
Q ss_pred CCccccc
Q 045935 235 DGNLLSG 241 (587)
Q Consensus 235 ~~~~~~~ 241 (587)
++|++..
T Consensus 256 ~~N~~~~ 262 (306)
T 2z66_A 256 TQNDFAC 262 (306)
T ss_dssp TTCCEEC
T ss_pred cCCCeec
Confidence 9999874
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=8.3e-25 Score=209.18 Aligned_cols=225 Identities=26% Similarity=0.265 Sum_probs=165.5
Q ss_pred eEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcc
Q 045935 332 VFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQ 411 (587)
Q Consensus 332 ~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~ 411 (587)
.++.+.+.+. .+|..+ .+.++.|++++|.+....+..|..+++|++|++++|.+++..+.++..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 3466666665 344433 3577888888888776666677777888888888887776667777778888888888886
Q ss_pred -cccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEeccc
Q 045935 412 -LTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSN 490 (587)
Q Consensus 412 -~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 490 (587)
++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+.... +|+.|++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~--~L~~L~l~~ 162 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------LPDDTFRDLG--NLTHLFLHG 162 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCT--TCCEEECCS
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-------cCHhHhccCC--CccEEECCC
Confidence 665556777777888888888888776666777778888888888866542 2222333333 788888888
Q ss_pred ccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceec
Q 045935 491 NFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVL 568 (587)
Q Consensus 491 ~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 568 (587)
|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|++.+-
T Consensus 163 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 888755556678888888888888888877778888888888888888888866666688888888888888887754
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=9.5e-25 Score=223.03 Aligned_cols=230 Identities=22% Similarity=0.213 Sum_probs=201.4
Q ss_pred cccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEc
Q 045935 328 QHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFL 407 (587)
Q Consensus 328 ~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L 407 (587)
..++.+++++|.+....+..|..+++|+.|++++|.+....+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45667799999998888889999999999999999999888888999999999999999999777777899999999999
Q ss_pred cCcccccCCCccccCCCCCcEEEcCCCc-CccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEE
Q 045935 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNK-LSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATL 486 (587)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L 486 (587)
++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++++|.+... + .+.... +|+.|
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--------~-~~~~l~--~L~~L 223 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--------P-NLTPLV--GLEEL 223 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--------C-CCTTCT--TCCEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--------c-cccccc--cccEE
Confidence 9999997777788999999999999954 5544445789999999999999887521 1 122233 89999
Q ss_pred ecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcce
Q 045935 487 NLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFA 566 (587)
Q Consensus 487 ~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 566 (587)
++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.++...+..|..+++|+.|++++|++.
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99999999888999999999999999999999888899999999999999999999777788899999999999999987
Q ss_pred ec
Q 045935 567 VL 568 (587)
Q Consensus 567 ~~ 568 (587)
+-
T Consensus 304 Cd 305 (452)
T 3zyi_A 304 CD 305 (452)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=7.8e-25 Score=222.88 Aligned_cols=230 Identities=22% Similarity=0.227 Sum_probs=202.8
Q ss_pred cccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEc
Q 045935 328 QHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFL 407 (587)
Q Consensus 328 ~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L 407 (587)
..++.+++++|.+....+..|..+++|+.|++++|.+....+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45677799999999888889999999999999999998877788999999999999999999777778999999999999
Q ss_pred cCcccccCCCccccCCCCCcEEEcCCCc-CccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEE
Q 045935 408 GNNQLTDSIPGSLGRLGGLVKLNLTGNK-LSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATL 486 (587)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L 486 (587)
++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++++|.+... +. +.... +|+.|
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--------~~-~~~l~--~L~~L 212 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--------PN-LTPLI--KLDEL 212 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--------CC-CTTCS--SCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--------cc-cCCCc--ccCEE
Confidence 9999998777889999999999999965 5544455789999999999999887521 11 22333 99999
Q ss_pred ecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcce
Q 045935 487 NLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFA 566 (587)
Q Consensus 487 ~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 566 (587)
++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|+|++|.++...+..|..+++|+.|++++|++.
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 99999999888999999999999999999999888899999999999999999999877888999999999999999987
Q ss_pred ec
Q 045935 567 VL 568 (587)
Q Consensus 567 ~~ 568 (587)
+-
T Consensus 293 Cd 294 (440)
T 3zyj_A 293 CN 294 (440)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=221.06 Aligned_cols=242 Identities=24% Similarity=0.187 Sum_probs=200.8
Q ss_pred cCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccc
Q 045935 4 LSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFT 83 (587)
Q Consensus 4 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (587)
.++..++ .+|..+. +++++|+|++|.+. .++...|.++++|++|+|++|.+....+..|.++++|++|++++|.++
T Consensus 50 c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 50 CVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp CCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred eCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 4455555 5666554 68999999999998 566688899999999999999998777788999999999999999988
Q ss_pred cCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEecccc-CcccCCccccCCCCCceeecccccCCCCCCccc
Q 045935 84 GQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQ-LNGSIPAELGKCENLKSVLLSFNALPGSLPEQL 162 (587)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l 162 (587)
...+..+..+++|++|++++|.++...+..+..+++|++|++++|. +....+..|..+++|++|++++|.+..
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~------ 199 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE------ 199 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS------
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc------
Confidence 6656678899999999999999987777788999999999999854 554455678889999999999998762
Q ss_pred CCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccc
Q 045935 163 SELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGT 242 (587)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 242 (587)
+| .+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|..+++|+.|++++|.++.
T Consensus 200 --------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 269 (440)
T 3zyj_A 200 --------IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL- 269 (440)
T ss_dssp --------CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC-
T ss_pred --------cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc-
Confidence 22 25678899999999999988778889999999999999999998888889999999999999988762
Q ss_pred cccccccccccccccCcccCCCC-ccEEeccCCCCcc
Q 045935 243 IEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTG 278 (587)
Q Consensus 243 ~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~ 278 (587)
..+..+..++ |+.+++++|.+.-
T Consensus 270 -------------~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 270 -------------LPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp -------------CCTTTTSSCTTCCEEECCSSCEEC
T ss_pred -------------cChhHhccccCCCEEEcCCCCccC
Confidence 3345667777 9999999998763
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.3e-29 Score=265.46 Aligned_cols=405 Identities=17% Similarity=0.139 Sum_probs=215.6
Q ss_pred cCCCccEEecCCCCCccCCccccc-cCCCCcEEEeccc-cCccc-CCccccCCCCCceeecccccCCCCCCcccCCcccc
Q 045935 92 ELSLLEIFSSPSCSITGPLPEELS-NYGSSGILNLGST-QLNGS-IPAELGKCENLKSVLLSFNALPGSLPEQLSELPLS 168 (587)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~ 168 (587)
.+++|++|++++|.+++..+..+. .+++|++|++++| .++.. .+..+..+++|++|++++|.+.+..+..+.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~----- 177 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS----- 177 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG-----
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH-----
Confidence 455566666665555544444443 4566666666665 33322 222333566666666666665433222211
Q ss_pred CCCCcccccCCCCCEEeCCCCc--cCC-CCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCccccccccc
Q 045935 169 GPLPSWFGKWNQLDSLLLSSNQ--FVG-RIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIED 245 (587)
Q Consensus 169 ~~~~~~~~~~~~L~~L~l~~~~--~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 245 (587)
.....+++|++|++++|. ++. .+...+.++++|++|++++|......+..+..+++|++|.++.+...
T Consensus 178 ----~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~----- 248 (594)
T 2p1m_B 178 ----HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE----- 248 (594)
T ss_dssp ----GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----
T ss_pred ----HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----
Confidence 112355667777776665 110 01111234577777777776222235555566677777776544310
Q ss_pred ccccccccccccCcccCCCC-ccEE-eccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcc
Q 045935 246 LVLGNNHIHGSIPEYLSELP-LVVL-DLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHD 323 (587)
Q Consensus 246 l~l~~~~~~~~~~~~~~~~~-L~~L-~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 323 (587)
+..+.+. .++..+..++ ++.+ .+.+... +.++.. ...+++|
T Consensus 249 --~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~-~~~~~~L-------------------------------- 291 (594)
T 2p1m_B 249 --VRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAV-YSVCSRL-------------------------------- 291 (594)
T ss_dssp --CCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGG-HHHHTTC--------------------------------
T ss_pred --cchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHH-HHhhCCC--------------------------------
Confidence 0111111 1111222233 3333 1111110 011111 1113333
Q ss_pred cccccccceEEccCCccccc-CCCCcCCCCcccEEEccCccCCCC-CCCCCcCCCCCCeEecCCC---------cCCCCC
Q 045935 324 LSFIQHHGVFDLSFNRLSCP-IPEDLGNCTVVVYLLLSNNMLSSK-IPGSRSRLTNLTILDLSRN---------ELAGSI 392 (587)
Q Consensus 324 ~~~~~~l~~l~l~~~~i~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~---------~i~~~~ 392 (587)
+.+++++|.+... ....+..+++|+.|++.+| +... .......+++|++|++.++ .+++..
T Consensus 292 -------~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 292 -------TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp -------CEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred -------CEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 4445555554322 1122456788999999988 3322 1112234788999988442 333222
Q ss_pred CcCcc-CCCCCcEEEccCcccccCCCcccc-CCCCCcEEEcC--C----CcCccc-----cccccccCCCCceeeccCCc
Q 045935 393 PPEFG-DSLKLQGLFLGNNQLTDSIPGSLG-RLGGLVKLNLT--G----NKLSGL-----VPTSLENLKGLTHLDLSYNK 459 (587)
Q Consensus 393 ~~~~~-~~~~L~~L~L~~~~~~~~~~~~l~-~~~~L~~L~L~--~----~~l~~~-----~~~~l~~~~~L~~L~l~~~~ 459 (587)
...+. .+++|++|.+..+.+++.....+. .+++|++|+++ + +.++.. .+..+..+++|++|++++ .
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 22222 378899998877777655444443 57889999998 3 334421 112256788899999876 2
Q ss_pred cccccccccccchhhhhhcccccccEEecccccCccCCchhc-cCCCCCcEEEccCcccccCCCc-ccCCCCCCceecCC
Q 045935 460 LDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSL-SNLSYLTSVDLHRNKFTGEIPP-ELGNLIQLEYLDVS 537 (587)
Q Consensus 460 i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~ 537 (587)
++ +.....+.. ..++|+.|++++|.+++.....+ ..+++|++|++++|++++.... ....+++|++|+++
T Consensus 443 l~-------~~~~~~l~~-~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 443 LT-------DKVFEYIGT-YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp CC-------HHHHHHHHH-HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred cc-------HHHHHHHHH-hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 22 112222222 12278999999888875544444 6688899999999988643332 34567889999999
Q ss_pred CCcccccCChhh-cCCCCCccccCCCCc
Q 045935 538 KNMLCGQIPKKI-CRLSNLLYLSFEENR 564 (587)
Q Consensus 538 ~n~l~~~~~~~l-~~l~~L~~L~l~~n~ 564 (587)
+|+++......+ ..++.|+...+..+.
T Consensus 515 ~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 515 SCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 988864444444 557777766666553
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=2.8e-25 Score=219.43 Aligned_cols=206 Identities=14% Similarity=0.048 Sum_probs=116.8
Q ss_pred cccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCC
Q 045935 16 QIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSL 95 (587)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 95 (587)
+-..|+.....+.+++.++ ++|.+. .++|++|++++|.+....+..|.++++|++|++++|.+++..+..+.++++
T Consensus 26 ~~~~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 26 ASLSCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp -CCEECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 3445666666777777777 677332 247777777777777555556777777777777777776555566777777
Q ss_pred ccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCC-ccccCCCCCceeeccccc-CCCCCCcccCCccccCCCCc
Q 045935 96 LEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIP-AELGKCENLKSVLLSFNA-LPGSLPEQLSELPLSGPLPS 173 (587)
Q Consensus 96 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~~~~~~~ 173 (587)
|++|++++|+++...+..+..+++|++|++++|+++.... ..+..+++|++|++++|. +.. ..+.
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-------------~~~~ 168 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-------------IQRK 168 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-------------ECTT
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-------------cCHH
Confidence 7777777777665444446666666777666666663322 345566666666666653 211 1122
Q ss_pred ccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcc
Q 045935 174 WFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNL 238 (587)
Q Consensus 174 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 238 (587)
.+..+++|++|++++|.+++..+..+.++++|++|++++|.++......+..+++|++|++++|.
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 33444555555555555544444445555555555555554432211122223444444444443
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.3e-24 Score=222.11 Aligned_cols=242 Identities=24% Similarity=0.174 Sum_probs=204.7
Q ss_pred cCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccc
Q 045935 4 LSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFT 83 (587)
Q Consensus 4 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (587)
.++..++ .+|..+. +++++|+|++|.+. .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++
T Consensus 61 c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 61 CTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp CCSSCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcC-ccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 3445555 4565554 68999999999998 565588999999999999999999888889999999999999999998
Q ss_pred cCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEecccc-CcccCCccccCCCCCceeecccccCCCCCCccc
Q 045935 84 GQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQ-LNGSIPAELGKCENLKSVLLSFNALPGSLPEQL 162 (587)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l 162 (587)
...+..+..+++|++|++++|.++...+..+..+++|++|++++|. +....+..|..+++|++|++++|.+.+.
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----- 211 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM----- 211 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-----
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-----
Confidence 6666778899999999999999997777789999999999999854 5544556788999999999999997632
Q ss_pred CCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccc
Q 045935 163 SELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGT 242 (587)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 242 (587)
| .+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|..+++|+.|++++|.++.
T Consensus 212 ---------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 280 (452)
T 3zyi_A 212 ---------P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS- 280 (452)
T ss_dssp ---------C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-
T ss_pred ---------c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-
Confidence 2 25678899999999999998888899999999999999999998888999999999999999998762
Q ss_pred cccccccccccccccCcccCCCC-ccEEeccCCCCcc
Q 045935 243 IEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTG 278 (587)
Q Consensus 243 ~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~ 278 (587)
..+..+..++ ++.+++++|.+.-
T Consensus 281 -------------~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 281 -------------LPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp -------------CCTTSSTTCTTCCEEECCSSCEEC
T ss_pred -------------cChHHhccccCCCEEEccCCCcCC
Confidence 3345667788 9999999998864
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5.2e-28 Score=257.07 Aligned_cols=205 Identities=15% Similarity=0.113 Sum_probs=113.6
Q ss_pred CCCCCcEEEecccccccCCChhhh-cCCCccEEecCCC-CCccC-CccccccCCCCcEEEeccccCcccCCccc----cC
Q 045935 68 NLKNLTHFFLGINQFTGQLPPEIG-ELSLLEIFSSPSC-SITGP-LPEELSNYGSSGILNLGSTQLNGSIPAEL----GK 140 (587)
Q Consensus 68 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l----~~ 140 (587)
.+++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++.....+++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456677777777666554444454 5677777777666 33332 22233456777777777776654433322 25
Q ss_pred CCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCc-cCCCCCccccCCCcccEEecCCCc-----
Q 045935 141 CENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQ-FVGRIPPEIGSCSMLKYISLSSNF----- 214 (587)
Q Consensus 141 l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~----- 214 (587)
+++|++|++++|. ....+..+ +..+.++++|++|++++|. +. .++..+..+++|++|+++.+.
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l---------~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSAL---------ERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHH---------HHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred CCcCcEEEecccC-CcCCHHHH---------HHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccch
Confidence 5677777777665 10101111 1112345777777777763 33 245556667777777755442
Q ss_pred --cccccCccccCCCCCcEE-EcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCc
Q 045935 215 --VSGSIPRELCNSESLVEI-NLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKN 290 (587)
Q Consensus 215 --~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~ 290 (587)
+. ..+..+.++++|+.+ .+.+.... .++..+..++ |++|++++|.+++.....+...+++
T Consensus 252 ~~~~-~l~~~l~~~~~L~~Ls~~~~~~~~---------------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 252 DVYS-GLSVALSGCKELRCLSGFWDAVPA---------------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315 (594)
T ss_dssp HHHH-HHHHHHHTCTTCCEEECCBTCCGG---------------GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTT
T ss_pred hhHH-HHHHHHhcCCCcccccCCcccchh---------------hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCC
Confidence 22 233355667777776 23222111 2333333445 7778887777665444444555788
Q ss_pred cceeccccc
Q 045935 291 LIEFSAASN 299 (587)
Q Consensus 291 L~~l~l~~~ 299 (587)
|+.|++.+|
T Consensus 316 L~~L~l~~~ 324 (594)
T 2p1m_B 316 LQRLWVLDY 324 (594)
T ss_dssp CCEEEEEGG
T ss_pred cCEEeCcCc
Confidence 888887766
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.1e-25 Score=215.94 Aligned_cols=208 Identities=23% Similarity=0.213 Sum_probs=164.4
Q ss_pred CCCcccEEEccCccCCCCCCCCC--cCCCCCCeEecCCCcCCCCCCcCccCC-----CCCcEEEccCcccccCCCccccC
Q 045935 350 NCTVVVYLLLSNNMLSSKIPGSR--SRLTNLTILDLSRNELAGSIPPEFGDS-----LKLQGLFLGNNQLTDSIPGSLGR 422 (587)
Q Consensus 350 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~~~l~~ 422 (587)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56788899999988886666654 7888999999999988865 6666665 88999999999998777788888
Q ss_pred CCCCcEEEcCCCcCccc--ccccc--ccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCc
Q 045935 423 LGGLVKLNLTGNKLSGL--VPTSL--ENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLP 498 (587)
Q Consensus 423 ~~~L~~L~L~~~~l~~~--~~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 498 (587)
+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+... .......+.... +|+.|++++|.+++..+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP----SGVCSALAAARV--QLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH----HHHHHHHHHTTC--CCSEEECTTSCCCSSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch----HHHHHHHHhcCC--CCCEEECCCCcCCcccc
Confidence 99999999999987543 22233 7889999999999876411 011112223334 89999999999986553
Q ss_pred -hhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecC
Q 045935 499 -RSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLG 569 (587)
Q Consensus 499 -~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 569 (587)
..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++.+
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~~ 312 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDSE 312 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCCC
T ss_pred hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCCC
Confidence 55677899999999999999 7777776 8999999999999865 66 899999999999999998753
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=6.8e-25 Score=212.89 Aligned_cols=254 Identities=18% Similarity=0.148 Sum_probs=197.8
Q ss_pred ccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEeccccc
Q 045935 3 YLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQF 82 (587)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (587)
+++.+.+.......+..+++|++|++++|.+. .++...|.++++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 56777777667677778889999999999998 4555788999999999999999875443 88999999999999988
Q ss_pred ccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCccc
Q 045935 83 TGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQL 162 (587)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l 162 (587)
++. ...++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 93 ~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 161 (317)
T 3o53_A 93 QEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF--- 161 (317)
T ss_dssp EEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG---
T ss_pred ccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH---
Confidence 732 2458999999999998865433 36789999999999987777788889999999999998764322
Q ss_pred CCccccCCCCccc-ccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCccccc
Q 045935 163 SELPLSGPLPSWF-GKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSG 241 (587)
Q Consensus 163 ~~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 241 (587)
..+ ..+++|++|++++|.+++. + ....+++|++|++++|.++ .++..+..+++|++|++++|.+.
T Consensus 162 ----------~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~- 227 (317)
T 3o53_A 162 ----------AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227 (317)
T ss_dssp ----------GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-
T ss_pred ----------HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-
Confidence 223 3678999999999998744 2 3445899999999999998 45555888899999999999877
Q ss_pred ccccccccccccccccCcccCCCC-ccEEeccCCCCc-cccchhhhhcCCccceeccccc
Q 045935 242 TIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFT-GIIPLSLWKNSKNLIEFSAASN 299 (587)
Q Consensus 242 ~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~-~~~~~~~~~~~~~L~~l~l~~~ 299 (587)
.+|..+..++ ++.+++++|.+. +..+.. +..++.|+.+++.++
T Consensus 228 --------------~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~-~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 228 --------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTV 272 (317)
T ss_dssp --------------EECTTCCCCTTCCEEECTTCCCBHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred --------------chhhHhhcCCCCCEEEccCCCccCcCHHHH-HhccccceEEECCCc
Confidence 4566677777 888888888887 434433 333677777766643
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=7.5e-25 Score=212.06 Aligned_cols=252 Identities=19% Similarity=0.127 Sum_probs=162.2
Q ss_pred cccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccc-cCCCCCcC-------CCCCCcEEEecccccccCCC
Q 045935 16 QIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLY-GSFPPEIG-------NLKNLTHFFLGINQFTGQLP 87 (587)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~ 87 (587)
.+...++|+++++++|.+ .+|..... . |++|++++|.+. ...+..+. ++++|++|++++|.+++.+|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~-~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTD-I--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHH-H--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHH-H--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 345566777777777777 56633332 2 677777777763 23444333 57777777777777776666
Q ss_pred hhh--hcCCCccEEecCCCCCccCCccccccC-----CCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCc
Q 045935 88 PEI--GELSLLEIFSSPSCSITGPLPEELSNY-----GSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPE 160 (587)
Q Consensus 88 ~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 160 (587)
..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..++.+++|++|++++|.+.+..+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~- 190 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG- 190 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-
Confidence 665 6777777777777777765 6666655 777777777777776666777777777777777777532110
Q ss_pred ccCCccccCCCCcc--cccCCCCCEEeCCCCccCCC---CCccccCCCcccEEecCCCccccccC-ccccCCCCCcEEEc
Q 045935 161 QLSELPLSGPLPSW--FGKWNQLDSLLLSSNQFVGR---IPPEIGSCSMLKYISLSSNFVSGSIP-RELCNSESLVEINL 234 (587)
Q Consensus 161 ~l~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l 234 (587)
++.. +..+++|++|++++|++++. ....+.++++|++|++++|.+++..| ..+..+++|++|++
T Consensus 191 ----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 191 ----------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp ----------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred ----------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 1111 25667777777777777621 11223466777777777777775553 34455677777777
Q ss_pred CCcccccccccccccccccccccCcccCCCCccEEeccCCCCccccchhhhhcCCccceecccccceee
Q 045935 235 DGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEG 303 (587)
Q Consensus 235 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 303 (587)
++|.++ .+|..+. ..++.|++++|++++. |. +..+++|+.+++.+|.+++
T Consensus 261 s~N~l~---------------~ip~~~~-~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 261 SFTGLK---------------QVPKGLP-AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTSCCS---------------SCCSSCC-SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTTC
T ss_pred CCCccC---------------hhhhhcc-CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCCC
Confidence 777765 4444444 2277777777777754 44 3447778888887776653
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=4.9e-22 Score=207.83 Aligned_cols=165 Identities=28% Similarity=0.278 Sum_probs=103.5
Q ss_pred CcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 045935 352 TVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNL 431 (587)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L 431 (587)
++|+.|++++|.+.... . .+++|+.|++++|.++. +| ..+++|+.|++++|.+++. +. .+++|+.|++
T Consensus 141 ~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L 208 (622)
T 3g06_A 141 PGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWA 208 (622)
T ss_dssp TTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEEC
Confidence 66777777777776432 1 34567788888877763 34 3457777888888777642 22 2467777777
Q ss_pred CCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEE
Q 045935 432 TGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVD 511 (587)
Q Consensus 432 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 511 (587)
++|.+... +. .+++|++|++++|.+.. ++ ..+++|+.|++++|.++ .+|. .+++|++|+
T Consensus 209 ~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~--------lp-----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 209 YNNRLTSL-PA---LPSGLKELIVSGNRLTS--------LP-----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLS 267 (622)
T ss_dssp CSSCCSSC-CC---CCTTCCEEECCSSCCSC--------CC-----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred cCCccccc-CC---CCCCCCEEEccCCccCc--------CC-----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence 77777632 32 23667777777765541 11 01126777777777766 3443 456677777
Q ss_pred ccCcccccCCCcccCCCCCCceecCCCCcccccCChhhc
Q 045935 512 LHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKIC 550 (587)
Q Consensus 512 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 550 (587)
+++|+++ .+|..+.++++|+.|++++|++++..|..+.
T Consensus 268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 7777776 5566666777777777777777665555554
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=7.2e-22 Score=206.58 Aligned_cols=94 Identities=27% Similarity=0.207 Sum_probs=56.1
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
++++|+++++.++ .+|... . ++|++|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l-~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCL-P--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCC-C--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhh-C--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 5777777777777 677332 2 67777777777766 4443 4567777777777666 3443 4566666666
Q ss_pred CCCCCccCCccccccCCCCcEEEeccccCc
Q 045935 102 PSCSITGPLPEELSNYGSSGILNLGSTQLN 131 (587)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 131 (587)
++|.++.. +. .+++|+.|++++|.++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCS
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCC
Confidence 66655532 22 3445555555555544
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.1e-22 Score=193.45 Aligned_cols=233 Identities=26% Similarity=0.277 Sum_probs=168.8
Q ss_pred EccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccc
Q 045935 334 DLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLT 413 (587)
Q Consensus 334 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 413 (587)
+..+..+. .+|..+. +.++.|++++|.+....+..+..+++|++|++++|.+....+.++..+++|++|++++|.++
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 34444443 3444443 56888888888887666667777888888888888887666667788888888888888887
Q ss_pred cCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccC
Q 045935 414 DSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFF 493 (587)
Q Consensus 414 ~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l 493 (587)
+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+... ..+..+.... +|+.|++++|.+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~l~~~~~~l~--~L~~L~Ls~N~l 161 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF------KLPEYFSNLT--NLEHLDLSSNKI 161 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------CCCGGGGGCT--TCCEEECCSSCC
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee------cCchhhccCC--CCCEEECCCCCC
Confidence 76667777888888888888888766665678888888888888765421 1244444444 888888888888
Q ss_pred ccCCchhccCCCCCc----EEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecC
Q 045935 494 DGGLPRSLSNLSYLT----SVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLG 569 (587)
Q Consensus 494 ~~~~~~~~~~~~~L~----~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 569 (587)
++..+..+..+++|+ +|++++|.+++..+..+ ...+|++|++++|.++...+..|..+++|+.|++++|++.+-.
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 866666776666666 88999999885544444 4458999999999998766667888999999999999988643
Q ss_pred cCchhhhHHH
Q 045935 570 INRLDYVKYW 579 (587)
Q Consensus 570 ~~~~~~~~~l 579 (587)
..+..+..|
T Consensus 241 -~~l~~l~~~ 249 (276)
T 2z62_A 241 -PRIDYLSRW 249 (276)
T ss_dssp -TTTHHHHHH
T ss_pred -CchHHHHHH
Confidence 233444444
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=4.9e-24 Score=206.83 Aligned_cols=257 Identities=19% Similarity=0.179 Sum_probs=144.2
Q ss_pred ccEEeccCCCCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCC
Q 045935 266 LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIP 345 (587)
Q Consensus 266 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~ 345 (587)
++..+++.+.+. ..+..++..+++|++|++++|.+.+..+..+..++.+ +.+++++|.+.+..+
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L---------------~~L~Ls~n~l~~~~~ 75 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL---------------ELLNLSSNVLYETLD 75 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTC---------------CEEECTTSCCEEEEE
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcC---------------CEEECCCCcCCcchh
Confidence 444555555554 3333444446677777777776665444444333333 333666666654333
Q ss_pred CCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCC
Q 045935 346 EDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGG 425 (587)
Q Consensus 346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 425 (587)
+..+++|+.|++++|.+.... ..++|++|++++|.+.+..+ ..+++|++|++++|.+++..+..+..+++
T Consensus 76 --~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~ 145 (317)
T 3o53_A 76 --LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSR 145 (317)
T ss_dssp --ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSS
T ss_pred --hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCC
Confidence 566666666666666655322 22566666666666653322 22456666666666666555555566666
Q ss_pred CcEEEcCCCcCcccccccc-ccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCC
Q 045935 426 LVKLNLTGNKLSGLVPTSL-ENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNL 504 (587)
Q Consensus 426 L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 504 (587)
|++|++++|.+.+..+..+ ..+++|++|++++|.+... +.. .. .++|+.|++++|.++ .++..+..+
T Consensus 146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~-~~--l~~L~~L~Ls~N~l~-~l~~~~~~l 213 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--------KGQ-VV--FAKLKTLDLSSNKLA-FMGPEFQSA 213 (317)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--------ECC-CC--CTTCCEEECCSSCCC-EECGGGGGG
T ss_pred CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--------ccc-cc--cccCCEEECCCCcCC-cchhhhccc
Confidence 6666666666665444444 3456666666666655321 000 01 126666666666666 333346666
Q ss_pred CCCcEEEccCcccccCCCcccCCCCCCceecCCCCccc-ccCChhhcCCCCCccccCC
Q 045935 505 SYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLC-GQIPKKICRLSNLLYLSFE 561 (587)
Q Consensus 505 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~ 561 (587)
++|++|++++|+++ .+|..+..+++|+.|++++|++. +..|..+..++.|+.++++
T Consensus 214 ~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 66666666666666 44555666666666666666665 4455556666666666665
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=7.4e-23 Score=194.63 Aligned_cols=215 Identities=20% Similarity=0.137 Sum_probs=181.2
Q ss_pred ccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhh
Q 045935 12 TVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIG 91 (587)
Q Consensus 12 ~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 91 (587)
.+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+....+..|.++++|++|++++|.+++..+..+.
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 4555553 57999999999998 67757899999999999999999877777899999999999999999877778899
Q ss_pred cCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCccc-CCccccCCCCCceeecccccCCCCCCcccCCccccCC
Q 045935 92 ELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGS-IPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGP 170 (587)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~ 170 (587)
++++|++|++++|.++...+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+.
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~---------- 167 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT---------- 167 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG----------
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH----------
Confidence 999999999999999987777899999999999999999864 588899999999999999998743332
Q ss_pred CCcccccCCCCC----EEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCccccccc
Q 045935 171 LPSWFGKWNQLD----SLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTI 243 (587)
Q Consensus 171 ~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 243 (587)
.+..+++|+ .|++++|.+++..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|++....
T Consensus 168 ---~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 168 ---DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp ---GGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ---HhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 333444555 89999999985544444 4558999999999999776677888999999999999988543
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1e-21 Score=185.87 Aligned_cols=204 Identities=24% Similarity=0.263 Sum_probs=116.3
Q ss_pred ccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCC
Q 045935 354 VVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTG 433 (587)
Q Consensus 354 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~ 433 (587)
.+.++++++.+..+ |..+. +++++|++++|.+....+.+|..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~i-p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAI-PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCcc-CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 34455555554432 21111 3455555555555544444455555555555555555544444445555555555555
Q ss_pred CcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEcc
Q 045935 434 NKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLH 513 (587)
Q Consensus 434 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~ 513 (587)
|.+....+..+..+++|++|++++|.+. +..+..+.... +|+.|++++|.+++..+..|..+++|++|+++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLK-------SLPPRVFDSLT--KLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCC-------CCCTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccC-------eeCHHHhCcCc--CCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 5555444444555555555555554432 11122222222 56666666666664445556777777777777
Q ss_pred CcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecC
Q 045935 514 RNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLG 569 (587)
Q Consensus 514 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 569 (587)
+|++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++..-.
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 77777555556777777777777777777655566777777777777777776543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.9e-23 Score=214.44 Aligned_cols=241 Identities=18% Similarity=0.145 Sum_probs=182.1
Q ss_pred cCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhc
Q 045935 13 VPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGE 92 (587)
Q Consensus 13 ~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 92 (587)
+......+++|++|+|++|.+.+ ++...|..+++|++|+|++|.+.+..+ +..+++|++|++++|.+++. + .
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~ 97 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----V 97 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----E
T ss_pred HHHhcccCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----C
Confidence 33334445589999999999984 554788999999999999999875554 88999999999999988742 2 3
Q ss_pred CCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCC
Q 045935 93 LSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLP 172 (587)
Q Consensus 93 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~ 172 (587)
.++|++|++++|.+++..+. .+++|++|++++|.+++..+..++.+++|++|++++|.+.+.. |
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~ 161 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------------F 161 (487)
T ss_dssp CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-------------G
T ss_pred CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-------------h
Confidence 48999999999998865443 4578999999999998777888888999999999999876433 3
Q ss_pred cccc-cCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCccccccccccccccc
Q 045935 173 SWFG-KWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNN 251 (587)
Q Consensus 173 ~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~ 251 (587)
..+. .+++|++|++++|.+++. .....+++|++|++++|.+++ .|..+..+++|+.|++++|.+.
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~----------- 227 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV----------- 227 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-----------
T ss_pred HHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-----------
Confidence 3343 678999999999998854 234468999999999999984 4555888899999999988877
Q ss_pred ccccccCcccCCCC-ccEEeccCCCCc-cccchhhhhcCCccceecc
Q 045935 252 HIHGSIPEYLSELP-LVVLDLDSNNFT-GIIPLSLWKNSKNLIEFSA 296 (587)
Q Consensus 252 ~~~~~~~~~~~~~~-L~~L~l~~~~~~-~~~~~~~~~~~~~L~~l~l 296 (587)
.+|..+..++ ++.+++++|.+. +.++..+ ..++.++.+.+
T Consensus 228 ----~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~-~~l~~L~~l~~ 269 (487)
T 3oja_A 228 ----LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAK 269 (487)
T ss_dssp ----EECTTCCCCTTCCEEECTTCCBCHHHHHHHH-TTCHHHHHHHH
T ss_pred ----ccchhhccCCCCCEEEcCCCCCcCcchHHHH-HhCCCCcEEec
Confidence 4556666666 788888887776 3333322 22444444444
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.2e-21 Score=185.33 Aligned_cols=202 Identities=19% Similarity=0.175 Sum_probs=167.9
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
..++++++++.+. ++|.. +. +++++|++++|.+....+..|.++++|++|++++|.++...+..+.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~-~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSN-IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSC-CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCC-CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 5788999999998 78833 22 68999999999998666678999999999999999888555556788999999999
Q ss_pred CCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCC
Q 045935 102 PSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQL 181 (587)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L 181 (587)
++|.++...+..+..+++|++|++++|.++...+..|..+++|++|++++|.+.+. .+..+..+++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------~~~~~~~l~~L 159 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-------------PKGVFDKLTSL 159 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-------------CHhHccCCccc
Confidence 99999877777788899999999999999877777888999999999999987632 12336678899
Q ss_pred CEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 182 DSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 182 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
++|++++|.++...+..+.++++|++|++++|.++...+..+..+++|+.|++++|++.
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 99999999988766667888999999999999998666667888889999999988865
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.2e-22 Score=208.41 Aligned_cols=214 Identities=26% Similarity=0.254 Sum_probs=99.1
Q ss_pred cceEEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccC
Q 045935 330 HGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGN 409 (587)
Q Consensus 330 l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~ 409 (587)
++.+++++|.+.+..|..|..+++|+.|++++|.+....+ +..+++|++|++++|.+++. ...++|++|++++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L~L~~ 108 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAAN 108 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEEECCS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEEECcC
Confidence 3444555555444444445555555555555555443322 44445555555555544421 1124555555555
Q ss_pred cccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhh-hcccccccEEec
Q 045935 410 NQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFT-NSVAWNIATLNL 488 (587)
Q Consensus 410 ~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~-~~~~~~L~~L~L 488 (587)
|.+++..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..+..+. ... +|+.|++
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~l~~~l~--~L~~L~L 176 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-------TVNFAELAASSD--TLEHLNL 176 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-------EEEGGGGGGGTT--TCCEEEC
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-------CcChHHHhhhCC--cccEEec
Confidence 554433222 2344555555555555444444455555555555554332 11122221 112 5555555
Q ss_pred ccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcce
Q 045935 489 SNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFA 566 (587)
Q Consensus 489 ~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 566 (587)
++|.+++. + .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 177 s~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 177 QYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 55555422 1 12234555555555555552 2333455555555555555555 24444555555555555555554
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=6.2e-22 Score=187.50 Aligned_cols=182 Identities=21% Similarity=0.153 Sum_probs=87.9
Q ss_pred ccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCc
Q 045935 17 IGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLL 96 (587)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 96 (587)
+.++++|++|+++++.+. .++ .+..+++|++|++++|.+.+ ...+..+++|++|++++|.+++..+..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~--~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT--TGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCcc-ccc--ccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 344555555555555544 333 24445555555555555442 1244455555555555555443333334444555
Q ss_pred cEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccc
Q 045935 97 EIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFG 176 (587)
Q Consensus 97 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~ 176 (587)
++|++++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------------------------------ 155 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK------------------------------------ 155 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc------------------------------------
Confidence 55555554444433333444444444444444444333333444
Q ss_pred cCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 177 KWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
+++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 156 -l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 156 -LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 445555555555554443444455555555555555555444444455555555555555544
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=5.8e-22 Score=187.68 Aligned_cols=163 Identities=21% Similarity=0.155 Sum_probs=114.1
Q ss_pred hhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccC
Q 045935 90 IGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSG 169 (587)
Q Consensus 90 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~ 169 (587)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------ 124 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL------------ 124 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC------------
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc------------
Confidence 44444455555554444432 3455566666666666666655555566677777777777765422
Q ss_pred CCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCccccccccccccc
Q 045935 170 PLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLG 249 (587)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~ 249 (587)
.+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 125 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------- 195 (272)
T 3rfs_A 125 -PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-------- 195 (272)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--------
T ss_pred -CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc--------
Confidence 22335667788888888888886666678899999999999999997777778899999999999998762
Q ss_pred ccccccccCcccCCCC-ccEEeccCCCCccccc
Q 045935 250 NNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIP 281 (587)
Q Consensus 250 ~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 281 (587)
..+..+..++ ++.+++++|.+.+..+
T Consensus 196 ------~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 196 ------VPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp ------CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ------cCHHHHhCCcCCCEEEccCCCccccCc
Confidence 3445567777 8888888887765443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.8e-21 Score=183.38 Aligned_cols=203 Identities=20% Similarity=0.193 Sum_probs=167.7
Q ss_pred ccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCc
Q 045935 17 IGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLL 96 (587)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 96 (587)
+++++++++++++++.+. ++|.+. .+++++|++++|.+....+..|..+++|++|++++|.+++. +. ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 678899999999999998 788443 27899999999999877778899999999999999988743 22 2788999
Q ss_pred cEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccc
Q 045935 97 EIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFG 176 (587)
Q Consensus 97 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~ 176 (587)
++|++++|.++ .+|..+..+++|++|++++|+++...+..|..+++|++|++++|.+.+.. +..|.
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-------------~~~~~ 145 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-------------PGLLT 145 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-------------TTTTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-------------hhhcc
Confidence 99999999987 56777888999999999999998777778888999999999999876321 23356
Q ss_pred cCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 177 KWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
.+++|+.|++++|+++...+..+.++++|++|++++|.++ .+|..+....+|+.+++++|++.
T Consensus 146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 7789999999999988665666788899999999999888 67777777888888888888865
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=4e-21 Score=183.21 Aligned_cols=205 Identities=24% Similarity=0.214 Sum_probs=140.5
Q ss_pred cCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCc
Q 045935 348 LGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLV 427 (587)
Q Consensus 348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~ 427 (587)
+..+++++.++++++.+..+... + .++++.|++++|.++...+..+..+++|++|++++|.+++.... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 34556677777777666643322 2 24677777777777655566677777777777777776643332 5667777
Q ss_pred EEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCC
Q 045935 428 KLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYL 507 (587)
Q Consensus 428 ~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L 507 (587)
+|++++|.+. .++..+..+++|++|++++|.+. +..+..+.... +|+.|++++|.++...+..|..+++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-------~l~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-------SLPLGALRGLG--ELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-------CCCSSTTTTCT--TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-------ccCHHHHcCCC--CCCEEECCCCCCCccChhhcccccCC
Confidence 7777777776 44556667777777777776554 22223333333 77777777777776666667788888
Q ss_pred cEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceec
Q 045935 508 TSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVL 568 (587)
Q Consensus 508 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 568 (587)
++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|+.+++++|++.+-
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 88888888888555556677888888888888887 5677777778888888888888764
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=7.5e-23 Score=202.41 Aligned_cols=262 Identities=18% Similarity=0.149 Sum_probs=189.1
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCc----ccccCCC-CCcEEEccCCccccCCCCCcCCC-----CC
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPV----SLFTNLQ-SLSHLDVSNNSLYGSFPPEIGNL-----KN 71 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 71 (587)
..|++|.+++.+|..+...++|++|++++|.+. ..+. ..+.+++ +|++|++++|.+....+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 468999999999888888888999999999998 5654 6678888 89999999999987767666654 89
Q ss_pred CcEEEecccccccCCChhhh----cC-CCccEEecCCCCCccCCcccccc-----CCCCcEEEeccccCcccCCcc----
Q 045935 72 LTHFFLGINQFTGQLPPEIG----EL-SLLEIFSSPSCSITGPLPEELSN-----YGSSGILNLGSTQLNGSIPAE---- 137 (587)
Q Consensus 72 L~~L~l~~~~~~~~~~~~~~----~l-~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~---- 137 (587)
|++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+.. .++|++|++++|.+++.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999876666544 44 89999999999998776655433 369999999999988654433
Q ss_pred ccCCC-CCceeecccccCCCCCCcccCCccccCCCCcccccC-CCCCEEeCCCCccCCC----CCccccC-CCcccEEec
Q 045935 138 LGKCE-NLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKW-NQLDSLLLSSNQFVGR----IPPEIGS-CSMLKYISL 210 (587)
Q Consensus 138 l~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l 210 (587)
+..++ +|++|++++|.+.+..+..+. ..+..+ ++|++|++++|.+++. ++..+.. .++|++|++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~---------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELA---------KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHH---------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHH---------HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 45555 899999999988654433221 123445 4899999999998853 2334444 458999999
Q ss_pred CCCccccccC----ccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCcccc
Q 045935 211 SSNFVSGSIP----RELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGII 280 (587)
Q Consensus 211 ~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 280 (587)
++|.+++..+ ..+..+++|++|++++|.+...... ....++..+..++ ++.+++++|.+.+..
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~-------~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE-------QCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH-------HHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH-------HHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 9998886544 3345678899999988874311000 0012334455555 666777777666443
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=7.8e-23 Score=200.68 Aligned_cols=249 Identities=19% Similarity=0.187 Sum_probs=194.7
Q ss_pred cccCCCccccccCcccccc--CCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccC-CCCCcCCCCCCcEEEec
Q 045935 2 RYLSGNVLNGTVPRQIGEL--TQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGS-FPPEIGNLKNLTHFFLG 78 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~ 78 (587)
++++++.+. +..+.++ +++++++++++.+.+..+ . +.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 52 l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 52 LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-E-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp EECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-S-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred eccccccCC---HHHHHhhhhccceEEEcCCccccccch-h-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 577888777 4667777 999999999999985555 4 56799999999999988754 67778899999999999
Q ss_pred ccccccCCChhhhcCCCccEEecCCC-CCccC-CccccccCCCCcEEEeccc-cCccc-CCccccCCC-CCceeeccccc
Q 045935 79 INQFTGQLPPEIGELSLLEIFSSPSC-SITGP-LPEELSNYGSSGILNLGST-QLNGS-IPAELGKCE-NLKSVLLSFNA 153 (587)
Q Consensus 79 ~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~L~~n~ 153 (587)
+|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 99988777888999999999999999 67753 5666888999999999999 88754 466678899 99999999995
Q ss_pred CCCCCCcccCCcccc-CCCCcccccCCCCCEEeCCCCc-cCCCCCccccCCCcccEEecCCC-ccccccCccccCCCCCc
Q 045935 154 LPGSLPEQLSELPLS-GPLPSWFGKWNQLDSLLLSSNQ-FVGRIPPEIGSCSMLKYISLSSN-FVSGSIPRELCNSESLV 230 (587)
Q Consensus 154 ~~~~~~~~l~~l~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~ 230 (587)
+. ++ +.++..+.++++|++|++++|. +++..+..+.++++|++|++++| .++......+..+++|+
T Consensus 207 ~~-----------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 207 KN-----------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp GG-----------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred cc-----------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 21 11 2334556788999999999999 77667778899999999999999 45544445678899999
Q ss_pred EEEcCCcccccccccccccccccccccCcccCCC-C-ccEEeccCCCCccccchhh
Q 045935 231 EINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSEL-P-LVVLDLDSNNFTGIIPLSL 284 (587)
Q Consensus 231 ~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~-~-L~~L~l~~~~~~~~~~~~~ 284 (587)
.|++++| ++.. .+..+ . +..|++++|.+++..|...
T Consensus 276 ~L~l~~~-i~~~-----------------~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 276 TLQVFGI-VPDG-----------------TLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp EEECTTS-SCTT-----------------CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred EEeccCc-cCHH-----------------HHHHHHhhCcceEEecccCccccCCcc
Confidence 9999988 4421 11222 2 5556677777776665543
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.2e-21 Score=179.03 Aligned_cols=196 Identities=21% Similarity=0.240 Sum_probs=128.7
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCc-cccCCCCCcCCCCCCcEEEecc-cccccCCChhhhcCCCccEE
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNS-LYGSFPPEIGNLKNLTHFFLGI-NQFTGQLPPEIGELSLLEIF 99 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 99 (587)
+|++|++++|.+. .++...|.++++|++|++++|. +....+.+|.++++|++|++++ |.++...+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 6777777777777 5665667777777777777775 6655555677777777777777 66665545666777777777
Q ss_pred ecCCCCCccCCccccccCCCCc---EEEeccc-cCcccCCccccCCCCCc-eeecccccCCCCCCcccCCccccCCCCcc
Q 045935 100 SSPSCSITGPLPEELSNYGSSG---ILNLGST-QLNGSIPAELGKCENLK-SVLLSFNALPGSLPEQLSELPLSGPLPSW 174 (587)
Q Consensus 100 ~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~~~~~~~~ 174 (587)
++++|.+++ +|. +..+++|+ +|++++| .++...+..|..+++|+ +|++++|.+. . +|..
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~-------------i~~~ 174 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S-------------VQGY 174 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-E-------------ECTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-c-------------cCHh
Confidence 777777765 443 66666666 7777777 66655555677777777 7777777654 1 1222
Q ss_pred cccCCCCCEEeCCCCc-cCCCCCccccCC-CcccEEecCCCccccccCccccCCCCCcEEEcCCc
Q 045935 175 FGKWNQLDSLLLSSNQ-FVGRIPPEIGSC-SMLKYISLSSNFVSGSIPRELCNSESLVEINLDGN 237 (587)
Q Consensus 175 ~~~~~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 237 (587)
....++|++|++++|+ ++...+..|.++ ++|++|++++|.++. +|.. .+++|+.|+++++
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 2222567777777774 665555566666 777777777777763 3332 3566666766654
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.8e-21 Score=185.87 Aligned_cols=206 Identities=20% Similarity=0.208 Sum_probs=154.3
Q ss_pred CcccEEEccCccCCCCCCCCC--cCCCCCCeEecCCCcCCCCCC----cCccCCCCCcEEEccCcccccCCCccccCCCC
Q 045935 352 TVVVYLLLSNNMLSSKIPGSR--SRLTNLTILDLSRNELAGSIP----PEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGG 425 (587)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 425 (587)
+.|++|++++|.+....+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 447777777777766666555 677778888888887765433 23446788888888888888777778888888
Q ss_pred CcEEEcCCCcCccc--c--ccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhc
Q 045935 426 LVKLNLTGNKLSGL--V--PTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSL 501 (587)
Q Consensus 426 L~~L~L~~~~l~~~--~--~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 501 (587)
|++|++++|.+.+. . +..+..+++|++|++++|.++.. .......+.... +|+.|++++|.+++..|..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----~~~~~~l~~~l~--~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----TGVCAALAAAGV--QPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----HHHHHHHHHHTC--CCSSEECTTSCCCCCCCSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----HHHHHHHHhcCC--CCCEEECCCCCCCccchhhH
Confidence 99999988886532 1 22346788999999999876410 111111233334 89999999999987767777
Q ss_pred cCC---CCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceec
Q 045935 502 SNL---SYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVL 568 (587)
Q Consensus 502 ~~~---~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 568 (587)
..+ ++|++|++++|+++ .+|..+. ++|++|++++|.+++. |. +..+++|++|++++|+++..
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence 776 69999999999999 6777764 8999999999999853 44 67889999999999999764
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.7e-23 Score=207.87 Aligned_cols=220 Identities=15% Similarity=0.133 Sum_probs=132.7
Q ss_pred cCccccccCCCCEEeCCCCcCCCCcCc---ccccCCCCCcEEEccCCccc---cCCCCCc-------CCCCCCcEEEecc
Q 045935 13 VPRQIGELTQLPNLLLGNNLLSGSLPV---SLFTNLQSLSHLDVSNNSLY---GSFPPEI-------GNLKNLTHFFLGI 79 (587)
Q Consensus 13 ~~~~~~~~~~L~~L~l~~~~~~~~i~~---~~~~~l~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~ 79 (587)
++.++.++++|++|+|++|.+.+..+. ..+.++++|++|++++|.+. +.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 566777778888888888877643221 33567788888888876432 3333333 5777788888887
Q ss_pred ccccc----CCChhhhcCCCccEEecCCCCCccCCccccc----cC---------CCCcEEEeccccCccc-CC---ccc
Q 045935 80 NQFTG----QLPPEIGELSLLEIFSSPSCSITGPLPEELS----NY---------GSSGILNLGSTQLNGS-IP---AEL 138 (587)
Q Consensus 80 ~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~~---------~~L~~L~l~~~~~~~~-~~---~~l 138 (587)
|.++. .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++.. .+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 77765 2455667777777777777777644333333 23 6777777777776522 22 245
Q ss_pred cCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccC----CCCCccccCCCcccEEecCCCc
Q 045935 139 GKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFV----GRIPPEIGSCSMLKYISLSSNF 214 (587)
Q Consensus 139 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~ 214 (587)
..+++|++|++++|.+....... .++..+.++++|++|++++|.++ ..++..+..+++|++|++++|.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~--------l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEH--------LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHH--------HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HhCCCcCEEECcCCCCCHhHHHH--------HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 56667777777777654110000 01124556667777777777664 3445556666677777777766
Q ss_pred cccc----cCccccC--CCCCcEEEcCCcccc
Q 045935 215 VSGS----IPRELCN--SESLVEINLDGNLLS 240 (587)
Q Consensus 215 ~~~~----~~~~~~~--~~~L~~L~l~~~~~~ 240 (587)
+++. ++.++.. +++|++|++++|.+.
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 6643 3334422 566666666666554
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.3e-20 Score=181.52 Aligned_cols=205 Identities=20% Similarity=0.271 Sum_probs=164.6
Q ss_pred cCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccc
Q 045935 4 LSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFT 83 (587)
Q Consensus 4 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (587)
+..+.+++.. .+.++++|++|+++++.+. .++ .+..+++|++|++++|.+.. .+. +..+++|++|++++|.++
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 26 AGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp TTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS
T ss_pred hCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC
Confidence 4445555443 3567899999999999988 676 47889999999999998874 343 889999999999999887
Q ss_pred cCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccC
Q 045935 84 GQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLS 163 (587)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~ 163 (587)
+ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+
T Consensus 99 ~-~-~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~------- 165 (308)
T 1h6u_A 99 N-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD------- 165 (308)
T ss_dssp C-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-------
T ss_pred C-c-hhhcCCCCCCEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-------
Confidence 4 3 4688999999999999998864 348889999999999999874433 8888999999999998752
Q ss_pred CccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccc
Q 045935 164 ELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLS 240 (587)
Q Consensus 164 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (587)
++. +..+++|++|++++|.+++. + .+..+++|++|++++|.+++.. .+..+++|+.|++++|+++
T Consensus 166 -------~~~-l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 166 -------LTP-LANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -------CGG-GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred -------Chh-hcCCCCCCEEECCCCccCcC-h-hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 222 66788999999999998843 3 2788999999999999988544 3788899999999998876
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=7.6e-20 Score=170.91 Aligned_cols=181 Identities=24% Similarity=0.219 Sum_probs=115.8
Q ss_pred CcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 045935 352 TVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNL 431 (587)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L 431 (587)
...+.++++++.+..... .+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 346778888887774433 332 57888888888888777777888888888888888888777777788888888888
Q ss_pred CCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEE
Q 045935 432 TGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVD 511 (587)
Q Consensus 432 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 511 (587)
++|.+.+..+..+..+++|++|++++|.+. +..+..|..+++|++|+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---------------------------------~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK---------------------------------SLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------------------CCCTTTTTTCTTCCEEE
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCC---------------------------------CcChhHhccCCcccEEE
Confidence 888887666666777777777777775543 22223344445555555
Q ss_pred ccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceec
Q 045935 512 LHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVL 568 (587)
Q Consensus 512 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 568 (587)
+++|++++..+..+..+++|++|++++|.++...+..|..+++|+.|++++|++.+.
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 555555533333444555555555555555544444455555555555555555443
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=9.2e-23 Score=203.97 Aligned_cols=264 Identities=17% Similarity=0.146 Sum_probs=200.1
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccC----CCCCcCCCCCCcEEEecccc---cccCCChhh----
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGS----FPPEIGNLKNLTHFFLGINQ---FTGQLPPEI---- 90 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~---- 90 (587)
.|+...++...+. .++ ..+..+++|++|++++|.+... ++..+..+++|++|++++|. +++.+|..+
T Consensus 10 ~L~~~~l~~~~~~-~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 10 SLKLDAITTEDEK-SVF-AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp CCEESSCCSHHHH-TTS-HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred ccccCCCCHHHHH-HHH-HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 3444444444444 566 6778899999999999998755 33457899999999999974 344555554
Q ss_pred ---hcCCCccEEecCCCCCcc----CCccccccCCCCcEEEeccccCcccCCcccc----CC---------CCCceeecc
Q 045935 91 ---GELSLLEIFSSPSCSITG----PLPEELSNYGSSGILNLGSTQLNGSIPAELG----KC---------ENLKSVLLS 150 (587)
Q Consensus 91 ---~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~----~l---------~~L~~L~L~ 150 (587)
..+++|++|++++|.++. .++..+..+++|++|++++|.++...+..+. .+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 689999999999999987 3666788999999999999998754443333 34 899999999
Q ss_pred cccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCC-----CCCccccCCCcccEEecCCCccc----cccCc
Q 045935 151 FNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVG-----RIPPEIGSCSMLKYISLSSNFVS----GSIPR 221 (587)
Q Consensus 151 ~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~----~~~~~ 221 (587)
+|.+....... +...+..+++|++|++++|+++. ..+..+..+++|++|++++|.++ ..++.
T Consensus 168 ~n~l~~~~~~~---------l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 168 RNRLENGSMKE---------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp SSCCTGGGHHH---------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCCCcHHHHH---------HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 99975221110 11345678899999999999872 23337888999999999999996 56777
Q ss_pred cccCCCCCcEEEcCCcccccccccccccccccccccCcccCC--CC-ccEEeccCCCCcc----ccchhhhhcCCcccee
Q 045935 222 ELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSE--LP-LVVLDLDSNNFTG----IIPLSLWKNSKNLIEF 294 (587)
Q Consensus 222 ~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~--~~-L~~L~l~~~~~~~----~~~~~~~~~~~~L~~l 294 (587)
.+..+++|++|++++|.+...... .++..+.. ++ |+.|++++|.+++ .++..++..+++|+.|
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~----------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAA----------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHH----------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHccCCCcCEEECCCCCCchhhHH----------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 888999999999999987632110 23445533 66 9999999999997 4777776668999999
Q ss_pred cccccceeeccc
Q 045935 295 SAASNLLEGYLP 306 (587)
Q Consensus 295 ~l~~~~~~~~~~ 306 (587)
++.+|.+.+..+
T Consensus 309 ~l~~N~l~~~~~ 320 (386)
T 2ca6_A 309 ELNGNRFSEEDD 320 (386)
T ss_dssp ECTTSBSCTTSH
T ss_pred EccCCcCCcchh
Confidence 999998876553
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=181.81 Aligned_cols=204 Identities=18% Similarity=0.097 Sum_probs=98.9
Q ss_pred CCCcEEEecccccccCCChhh--hcCCCccEEecCCCCCccCCc----cccccCCCCcEEEeccccCcccCCccccCCCC
Q 045935 70 KNLTHFFLGINQFTGQLPPEI--GELSLLEIFSSPSCSITGPLP----EELSNYGSSGILNLGSTQLNGSIPAELGKCEN 143 (587)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 143 (587)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555554544444 555555555555555554322 22234555555555555555444455555555
Q ss_pred CceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCc----cccCCCcccEEecCCCcccccc
Q 045935 144 LKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPP----EIGSCSMLKYISLSSNFVSGSI 219 (587)
Q Consensus 144 L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~ 219 (587)
|++|++++|.+.+.... ..+..+..+++|++|++++|+++. .+. .+.++++|++|++++|.+++..
T Consensus 171 L~~L~Ls~N~l~~~~~~---------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGL---------MAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp CCEEECCSCTTCHHHHH---------HTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred CCEEECCCCCCccchhh---------hHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 55555555553210000 001112344555555555555541 111 1344555555555555555444
Q ss_pred CccccCC---CCCcEEEcCCcccccccccccccccccccccCcccCCCCccEEeccCCCCccccchhhhhcCCccceecc
Q 045935 220 PRELCNS---ESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELPLVVLDLDSNNFTGIIPLSLWKNSKNLIEFSA 296 (587)
Q Consensus 220 ~~~~~~~---~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 296 (587)
|..+..+ ++|++|++++|.++ .+|..+. ..|+.|++++|++++. +. +..+++|+.+++
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~---------------~lp~~~~-~~L~~L~Ls~N~l~~~-~~--~~~l~~L~~L~L 301 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLE---------------QVPKGLP-AKLRVLDLSSNRLNRA-PQ--PDELPEVDNLTL 301 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCC---------------SCCSCCC-SCCSCEECCSCCCCSC-CC--TTSCCCCSCEEC
T ss_pred hhhHHhccCcCcCCEEECCCCCCC---------------chhhhhc-CCCCEEECCCCcCCCC-ch--hhhCCCccEEEC
Confidence 4444443 35555555555544 2233332 1255566666655532 21 223566666666
Q ss_pred ccccee
Q 045935 297 ASNLLE 302 (587)
Q Consensus 297 ~~~~~~ 302 (587)
++|.++
T Consensus 302 ~~N~l~ 307 (310)
T 4glp_A 302 DGNPFL 307 (310)
T ss_dssp SSTTTS
T ss_pred cCCCCC
Confidence 666554
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=4.9e-21 Score=177.74 Aligned_cols=197 Identities=24% Similarity=0.211 Sum_probs=114.7
Q ss_pred CcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCc-CCCCCCcCccCCCCCcEEEccC-cccccCCCccccCCCCCcEE
Q 045935 352 TVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNE-LAGSIPPEFGDSLKLQGLFLGN-NQLTDSIPGSLGRLGGLVKL 429 (587)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~l~~~~~L~~L 429 (587)
+.++.|++++|.+....+..|..+++|++|++++|. ++...+.+|..+++|++|++++ |.++...+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367778888777776666667777778888887776 6655555677777777777777 77776666667777777777
Q ss_pred EcCCCcCccccccccccCCCCc---eeeccCC-ccccccccccccchhhhhhccccccc-EEecccccCccCCchhccCC
Q 045935 430 NLTGNKLSGLVPTSLENLKGLT---HLDLSYN-KLDVQHNKLSGPLNELFTNSVAWNIA-TLNLSNNFFDGGLPRSLSNL 504 (587)
Q Consensus 430 ~L~~~~l~~~~~~~l~~~~~L~---~L~l~~~-~i~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~l~~~~~~~~~~~ 504 (587)
++++|.+.+ .|. +..+++|+ +|++++| .+. +..+..+.... +|+ .|++++|.++...+..|..
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-------~i~~~~~~~l~--~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-------SIPVNAFQGLC--NETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-------EECTTTTTTTB--SSEEEEECCSCCCCEECTTTTTT-
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchh-------hcCcccccchh--cceeEEEcCCCCCcccCHhhcCC-
Confidence 777777764 333 56666666 6666665 332 11112222222 555 5555555555222223333
Q ss_pred CCCcEEEccCcc-cccCCCcccCCC-CCCceecCCCCcccccCChhhcCCCCCccccCCCC
Q 045935 505 SYLTSVDLHRNK-FTGEIPPELGNL-IQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEEN 563 (587)
Q Consensus 505 ~~L~~L~L~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 563 (587)
++|++|++++|+ +++..+..|.++ ++|++|++++|+++. +|.. .+++|+.|+++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 455555555553 554444445555 555555555555552 2222 3344555555444
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=5.5e-22 Score=196.22 Aligned_cols=262 Identities=18% Similarity=0.179 Sum_probs=192.7
Q ss_pred EEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCC----CCcCCCC-CCcEEEecccccccCCChhhhcC-----C
Q 045935 25 NLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFP----PEIGNLK-NLTHFFLGINQFTGQLPPEIGEL-----S 94 (587)
Q Consensus 25 ~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~ 94 (587)
+++++.+.+.+.+| ..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 46889999997777 666777779999999999986665 6778888 99999999999998777777765 9
Q ss_pred CccEEecCCCCCccCCcccccc----C-CCCcEEEeccccCcccCCccc----cC-CCCCceeecccccCCCCCCcccCC
Q 045935 95 LLEIFSSPSCSITGPLPEELSN----Y-GSSGILNLGSTQLNGSIPAEL----GK-CENLKSVLLSFNALPGSLPEQLSE 164 (587)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~l~~----~-~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~L~~n~~~~~~~~~l~~ 164 (587)
+|++|++++|.+++..+..+.. + ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+..+..+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-- 158 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL-- 158 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH--
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH--
Confidence 9999999999999877665444 4 899999999999986665544 34 3699999999999874333222
Q ss_pred ccccCCCCcccccCC-CCCEEeCCCCccCCCCCcc----ccCC-CcccEEecCCCccccc----cCccccC-CCCCcEEE
Q 045935 165 LPLSGPLPSWFGKWN-QLDSLLLSSNQFVGRIPPE----IGSC-SMLKYISLSSNFVSGS----IPRELCN-SESLVEIN 233 (587)
Q Consensus 165 l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~ 233 (587)
+..+..++ +|++|++++|++++..+.. +..+ ++|++|++++|.+++. ++..+.. .++|++|+
T Consensus 159 -------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 159 -------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp -------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred -------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence 22344454 9999999999998666543 3445 5999999999999863 3444444 45899999
Q ss_pred cCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCccccch---h---hhhcCCccceecccccceeeccc
Q 045935 234 LDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPL---S---LWKNSKNLIEFSAASNLLEGYLP 306 (587)
Q Consensus 234 l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~---~---~~~~~~~L~~l~l~~~~~~~~~~ 306 (587)
+++|.+...... .+...+..++ ++.|++++|.+.+..+. . .+..++.|+.+++++|.+.+..+
T Consensus 232 Ls~N~l~~~~~~----------~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 232 LCLNCLHGPSLE----------NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCSSCCCCCCHH----------HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CcCCCCCcHHHH----------HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 999987632110 2233455666 88999988874422211 1 22346778888888888765543
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.8e-19 Score=168.30 Aligned_cols=178 Identities=20% Similarity=0.189 Sum_probs=111.7
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
..++++++++.+. ++|.+ +. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567788888777 67733 22 57788888888877666667777788888888877777665666677777777777
Q ss_pred CCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCC
Q 045935 102 PSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQL 181 (587)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L 181 (587)
++|.++...+..+..+++|++|++++|.++...+..|..+++|++|++++|.+.+. .+..+..+++|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L 157 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-------------PAGAFDKLTNL 157 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-------------CHHHcCcCcCC
Confidence 77777655555666666666666666666644444455566666666666654411 11224444555
Q ss_pred CEEeCCCCccCCCCCccccCCCcccEEecCCCccc
Q 045935 182 DSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVS 216 (587)
Q Consensus 182 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 216 (587)
++|++++|++++..+..+..+++|++|++++|.+.
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 55555555555444444555555555555555544
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=7.9e-20 Score=176.08 Aligned_cols=195 Identities=23% Similarity=0.313 Sum_probs=94.9
Q ss_pred CCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 045935 351 CTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLN 430 (587)
Q Consensus 351 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~ 430 (587)
++.|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 44455555555554432 1 34445555555555555543222 45555555555555555432 2344555555555
Q ss_pred cCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEE
Q 045935 431 LTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSV 510 (587)
Q Consensus 431 L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 510 (587)
+++|.+.+. ..+..+++|++|++++|.+... +. +.... +|+.|++++|.+++ .+. +..+++|++|
T Consensus 114 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~--------~~-l~~l~--~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--------SP-LAGLT--NLQYLSIGNAQVSD-LTP-LANLSKLTTL 178 (308)
T ss_dssp CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--------GG-GGGCT--TCCEEECCSSCCCC-CGG-GTTCTTCCEE
T ss_pred CCCCCCCCc--hhhcCCCCCCEEECCCCccCcC--------cc-ccCCC--CccEEEccCCcCCC-Chh-hcCCCCCCEE
Confidence 555555432 1245555555555555443210 00 22222 55555555555552 222 5555555555
Q ss_pred EccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecCc
Q 045935 511 DLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGI 570 (587)
Q Consensus 511 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 570 (587)
++++|++++. +. +..+++|++|++++|.+.+.. .+..+++|+.|++++|+++..+.
T Consensus 179 ~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 179 KADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred ECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 5555555532 21 455555555555555555332 25555555555555555555433
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=2.7e-21 Score=189.74 Aligned_cols=255 Identities=16% Similarity=0.142 Sum_probs=196.7
Q ss_pred CCCCEEeCCCCcCCCCcCcccccCC--CCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccC-CChhhhcCCCcc
Q 045935 21 TQLPNLLLGNNLLSGSLPVSLFTNL--QSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQ-LPPEIGELSLLE 97 (587)
Q Consensus 21 ~~L~~L~l~~~~~~~~i~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~ 97 (587)
..+++++++++.+.+ ..+.++ +++++|+++++.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 348899999988762 556667 8999999999999865554 66899999999999998754 777888999999
Q ss_pred EEecCCCCCccCCccccccCCCCcEEEeccc-cCccc-CCccccCCCCCceeecccc-cCCCCCCcccCCccccCCCCcc
Q 045935 98 IFSSPSCSITGPLPEELSNYGSSGILNLGST-QLNGS-IPAELGKCENLKSVLLSFN-ALPGSLPEQLSELPLSGPLPSW 174 (587)
Q Consensus 98 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~~~~~~~~ 174 (587)
+|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .++..
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------~~~~~ 189 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------HVQVA 189 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------HHHHH
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------HHHHH
Confidence 9999999998888888999999999999999 57753 5566888999999999999 76421 13344
Q ss_pred cccCC-CCCEEeCCCCc--cC-CCCCccccCCCcccEEecCCCc-cccccCccccCCCCCcEEEcCCcc-cccccccccc
Q 045935 175 FGKWN-QLDSLLLSSNQ--FV-GRIPPEIGSCSMLKYISLSSNF-VSGSIPRELCNSESLVEINLDGNL-LSGTIEDLVL 248 (587)
Q Consensus 175 ~~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~l 248 (587)
+..++ +|++|++++|. ++ ..++..+.++++|++|++++|. +++..+..+..+++|++|++++|. +..
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~------- 262 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP------- 262 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-------
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-------
Confidence 67888 99999999994 44 3455667789999999999998 777788889999999999999985 210
Q ss_pred cccccccccCcccCCCC-ccEEeccCCCCccccchhhhhcCCccceecccccceeeccccccc
Q 045935 249 GNNHIHGSIPEYLSELP-LVVLDLDSNNFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIG 310 (587)
Q Consensus 249 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 310 (587)
.....+..++ |+.|++++| +.+.....+. ..+..|++.+|.+++..|..++
T Consensus 263 -------~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~---~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 263 -------ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK---EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp -------GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH---HHSTTSEESCCCSCCTTCSSCS
T ss_pred -------HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH---hhCcceEEecccCccccCCccc
Confidence 1112455667 999999888 5433222222 2355666777777766654443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.3e-19 Score=160.77 Aligned_cols=179 Identities=20% Similarity=0.197 Sum_probs=89.1
Q ss_pred EEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCC
Q 045935 25 NLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSC 104 (587)
Q Consensus 25 ~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 104 (587)
.++.+++.+. ++|.. ..++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 11 ~v~c~~~~l~-~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCcc-CCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4444445444 44411 1235555555555555333334455555555555555555333333455555555555555
Q ss_pred CCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEE
Q 045935 105 SITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSL 184 (587)
Q Consensus 105 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L 184 (587)
.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-------------PDGVFDRLTSLQYI 153 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEE
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-------------CHHHhccCCCccEE
Confidence 55544444455555555555555555544444455555555555555554311 11223445555556
Q ss_pred eCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCC
Q 045935 185 LLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSE 227 (587)
Q Consensus 185 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 227 (587)
++++|.+. +.+++|++|++..|.+++.+|..++.++
T Consensus 154 ~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 154 WLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred EecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 65555443 2344555555555555555555554443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=8.5e-19 Score=172.34 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=84.2
Q ss_pred CCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCC-CCCcCCCCCCcE-EEecccccccCCChhhhcCCCccE
Q 045935 21 TQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSF-PPEIGNLKNLTH-FFLGINQFTGQLPPEIGELSLLEI 98 (587)
Q Consensus 21 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~ 98 (587)
+++++|+|++|+|+ .+|.++|+++++|++|+|++|.+.+.+ +.+|.+++++++ +.++.|.+....+..+..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 45555555555555 555455555555555555555543222 234555555443 233334444444445555555555
Q ss_pred EecCCCCCccCCccccccCCCCcEEEecc-ccCcccCCccccCCC-CCceeecccccCCCCCCcccCCccccCCCCcccc
Q 045935 99 FSSPSCSITGPLPEELSNYGSSGILNLGS-TQLNGSIPAELGKCE-NLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFG 176 (587)
Q Consensus 99 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~ 176 (587)
|++++|+++...+..+....++..+++.+ +.+.......|..+. .++.|++++|.+. .++....
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--------------~i~~~~f 174 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--------------EIHNSAF 174 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--------------EECTTSS
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--------------CCChhhc
Confidence 55555555544333444444455555533 233333333333332 3455555555543 1122222
Q ss_pred cCCCCCEEeCCC-CccCCCCCccccCCCcccEEecCCCccc
Q 045935 177 KWNQLDSLLLSS-NQFVGRIPPEIGSCSMLKYISLSSNFVS 216 (587)
Q Consensus 177 ~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 216 (587)
...+|+++++.+ |.++...+.+|.++++|++|++++|.++
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 233455555543 3343222234455555555555555555
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.8e-18 Score=162.74 Aligned_cols=183 Identities=22% Similarity=0.293 Sum_probs=110.6
Q ss_pred cCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccc
Q 045935 4 LSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFT 83 (587)
Q Consensus 4 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 83 (587)
+....+++.. .+.++++|++|+++++.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 31 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 31 LKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp TTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hcCCCccccc--chhhcCcccEEEccCCCcc-cCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 3444444332 2346677777777777776 454 25667777777777777663322 667777777777777666
Q ss_pred cCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccC
Q 045935 84 GQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLS 163 (587)
Q Consensus 84 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~ 163 (587)
+ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 104 ~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~------ 171 (291)
T 1h6t_A 104 D-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI------ 171 (291)
T ss_dssp C-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC------
T ss_pred C-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc------
Confidence 3 2 3366667777777777766643 4566666666666666666533 4556666666666666665421
Q ss_pred CccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccc
Q 045935 164 ELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVS 216 (587)
Q Consensus 164 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 216 (587)
+. +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.++
T Consensus 172 --------~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 172 --------VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp --------GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred --------hh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 11 4455666666666666653 22 3556666666666666555
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=7.6e-18 Score=152.52 Aligned_cols=179 Identities=21% Similarity=0.162 Sum_probs=141.2
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccc
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQ 81 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (587)
++.+++.++ .+|..+ .++|++|++++|.+. .++...|.++++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 12 v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 12 VECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 345556665 444444 458899999999888 5666778888999999999998886666667888999999999988
Q ss_pred cccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcc
Q 045935 82 FTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQ 161 (587)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 161 (587)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 88655566788899999999999888776667888889999999999888666666888889999999888753
Q ss_pred cCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCc
Q 045935 162 LSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSM 204 (587)
Q Consensus 162 l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 204 (587)
+.++.|+.|++..|.+++.+|..++.++.
T Consensus 162 --------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --------------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --------------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 35668888888888888888887776655
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=7.6e-18 Score=176.04 Aligned_cols=186 Identities=22% Similarity=0.283 Sum_probs=145.0
Q ss_pred ccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEeccccc
Q 045935 3 YLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQF 82 (587)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 82 (587)
+|..+.+++..+ +.++++|++|+++++.+. .++ .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+
T Consensus 27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred hccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 456666665543 578888999999998887 566 47888999999999998874433 88889999999999888
Q ss_pred ccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCccc
Q 045935 83 TGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQL 162 (587)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l 162 (587)
.+ + ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 100 ~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~---- 169 (605)
T 1m9s_A 100 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---- 169 (605)
T ss_dssp CC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG----
T ss_pred CC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch----
Confidence 74 3 3688888999999998888753 5688888899999988888754 66788888888888888875321
Q ss_pred CCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccc
Q 045935 163 SELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGS 218 (587)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 218 (587)
. +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+...
T Consensus 170 ----------~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 ----------P-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ----------G-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred ----------h-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 1 56778888888888888743 3578888888888888888744
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=4.8e-18 Score=166.95 Aligned_cols=222 Identities=19% Similarity=0.131 Sum_probs=160.8
Q ss_pred ccccceEEccCCcccccCCCCcCCCCcccEEEccCccCCCC-CCCCCcCCCCCCe-EecCCCcCCCCCCcCccCCCCCcE
Q 045935 327 IQHHGVFDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSK-IPGSRSRLTNLTI-LDLSRNELAGSIPPEFGDSLKLQG 404 (587)
Q Consensus 327 ~~~l~~l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~-L~l~~~~i~~~~~~~~~~~~~L~~ 404 (587)
+..++.+++++|.++...+.+|.++++|+.|++++|.+.+. .+..|.+++++++ +.+..|.+....+.+|..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 45678889999999866667789999999999999987654 4467788888776 455567888777788899999999
Q ss_pred EEccCcccccCCCccccCCCCCcEEEcCC-CcCccccccccccCC-CCceeeccCCccccccccccccchhhhhhccccc
Q 045935 405 LFLGNNQLTDSIPGSLGRLGGLVKLNLTG-NKLSGLVPTSLENLK-GLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWN 482 (587)
Q Consensus 405 L~L~~~~~~~~~~~~l~~~~~L~~L~L~~-~~l~~~~~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~ 482 (587)
|++++|.+....+..+....++..+++.+ +.+....+..+..+. .+++|++++|.+.... +..+ ... +
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~-------~~~f-~~~--~ 178 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-------NSAF-NGT--Q 178 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-------TTSS-TTE--E
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC-------hhhc-ccc--c
Confidence 99999998876666666677788888866 456655555666654 6888999998765211 1111 222 7
Q ss_pred ccEEeccc-ccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCC-cccccCChhhcCCCCCccccC
Q 045935 483 IATLNLSN-NFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKN-MLCGQIPKKICRLSNLLYLSF 560 (587)
Q Consensus 483 L~~L~L~~-~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l 560 (587)
|+++++++ |.++...+..|..+++|++|++++|+++...+..+.+ |+.|.+.++ .++ .+| .+.++++|+.+++
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l 253 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLK-KLP-TLEKLVALMEASL 253 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCC-CCC-CTTTCCSCCEEEC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcC-cCC-CchhCcChhhCcC
Confidence 89999975 5666444567889999999999999998554445554 444444444 344 455 3778899999998
Q ss_pred CCC
Q 045935 561 EEN 563 (587)
Q Consensus 561 ~~n 563 (587)
.++
T Consensus 254 ~~~ 256 (350)
T 4ay9_X 254 TYP 256 (350)
T ss_dssp SCH
T ss_pred CCC
Confidence 765
No 101
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.75 E-value=8.4e-17 Score=160.85 Aligned_cols=332 Identities=13% Similarity=0.073 Sum_probs=163.8
Q ss_pred CcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccc
Q 045935 36 SLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELS 115 (587)
Q Consensus 36 ~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 115 (587)
+|...+|.+|++|+.+.++.+ +......+|.+|++|+.+++..+ ++.....++.+|..|+.+.+..+ +......+|.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 455566666666666666543 44344556666666666666543 33233455666666666555432 2323334455
Q ss_pred cCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCC
Q 045935 116 NYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRI 195 (587)
Q Consensus 116 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 195 (587)
.+..+....... .......+|..|.+|+.+.+..+... --...|..+++|+.+++..+ ++...
T Consensus 138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~~--------------I~~~~F~~c~~L~~i~l~~~-~~~I~ 200 (394)
T 4fs7_A 138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSMET--------------LHNGLFSGCGKLKSIKLPRN-LKIIR 200 (394)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCE--------------ECTTTTTTCTTCCBCCCCTT-CCEEC
T ss_pred cccccccccCcc--ccccchhhhcccCCCcEEecCCccce--------------eccccccCCCCceEEEcCCC-ceEeC
Confidence 544332222211 12233455667777777776543311 01233566677777777654 33244
Q ss_pred CccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCC
Q 045935 196 PPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSN 274 (587)
Q Consensus 196 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~ 274 (587)
..+|.+++.|+.+.+..+... +...+....+|+.+.+...... .....+..+. ++.+.+..+
T Consensus 201 ~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~~~---------------i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 201 DYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSFTE---------------LGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp TTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTCCE---------------ECSSTTTTCSSCCEEEECCT
T ss_pred chhhccccccceeecCCCceE--eehhhcccCCCceEEECCCcee---------------cccccccccccceeEEcCCC
Confidence 456777777777777655332 2233334456666666443211 1122333333 444443332
Q ss_pred CCccccchhhhhcCCccceecccccceeecccccccchhhhHHHHhhcccccccccceEEccCCcccccCCCCcCCCCcc
Q 045935 275 NFTGIIPLSLWKNSKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGVFDLSFNRLSCPIPEDLGNCTVV 354 (587)
Q Consensus 275 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~l~~~~i~~~~~~~~~~~~~L 354 (587)
... +....|..+..++.+.... .. ....+|..+.+|
T Consensus 264 ~~~--i~~~~F~~~~~l~~~~~~~---------------------------------------~~---i~~~~F~~~~~L 299 (394)
T 4fs7_A 264 KLR--IGGSLFYNCSGLKKVIYGS---------------------------------------VI---VPEKTFYGCSSL 299 (394)
T ss_dssp TCE--ECSCTTTTCTTCCEEEECS---------------------------------------SE---ECTTTTTTCTTC
T ss_pred cce--eeccccccccccceeccCc---------------------------------------ee---eccccccccccc
Confidence 211 2222222233333222211 11 112345555666
Q ss_pred cEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCC
Q 045935 355 VYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGN 434 (587)
Q Consensus 355 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~ 434 (587)
+.+.+.++ +..+...+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 66666543 33344455666666666666533 44344555666666666666554 44445555666666666666443
Q ss_pred cCccccccccccCCCCcee
Q 045935 435 KLSGLVPTSLENLKGLTHL 453 (587)
Q Consensus 435 ~l~~~~~~~l~~~~~L~~L 453 (587)
+. ....+|.+|++|+++
T Consensus 377 -~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 -LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -GG-GGGGGBCTTCEEEEE
T ss_pred -CE-EhhheecCCCCCcEE
Confidence 11 123455555555543
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.4e-17 Score=171.90 Aligned_cols=179 Identities=25% Similarity=0.316 Sum_probs=144.2
Q ss_pred CCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEec
Q 045935 22 QLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSS 101 (587)
Q Consensus 22 ~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 101 (587)
+|++|+++++.+. .+|... +++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 8999999999998 588444 378999999999988 666 457899999999999885 666 554 9999999
Q ss_pred CCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCC
Q 045935 102 PSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQL 181 (587)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L 181 (587)
++|.+++ +|. .+++|++|++++|.+++ ++. .+++|++|++++|.+++ +|. +. ++|
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~--------------lp~-l~--~~L 182 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF--------------LPE-LP--ESL 182 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--------------CCC-CC--TTC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC--------------cch-hh--CCC
Confidence 9999986 555 67899999999999885 454 57899999999999763 334 33 789
Q ss_pred CEEeCCCCccCCCCCccccCCCcc-------cEEecCCCccccccCccccCCCCCcEEEcCCcccccc
Q 045935 182 DSLLLSSNQFVGRIPPEIGSCSML-------KYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGT 242 (587)
Q Consensus 182 ~~L~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 242 (587)
+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.
T Consensus 183 ~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 183 EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 99999999998 5565 544 66 99999999998 6788888899999999999988753
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=9.9e-18 Score=159.88 Aligned_cols=173 Identities=26% Similarity=0.335 Sum_probs=123.5
Q ss_pred cCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCc
Q 045935 348 LGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLV 427 (587)
Q Consensus 348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~ 427 (587)
+..++.|+.|++++|.+... ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 34567888899998887754 346778889999999888875433 78888888888888888752 3377888888
Q ss_pred EEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCC
Q 045935 428 KLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYL 507 (587)
Q Consensus 428 ~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L 507 (587)
+|++++|.+.+. ..+..+++|++|++++|.+... ..+.... +|+.|++++|.+++..+ +..+++|
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---------~~l~~l~--~L~~L~L~~N~l~~~~~--l~~l~~L 180 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---------TVLSRLT--KLDTLSLEDNQISDIVP--LAGLTKL 180 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---------GGGGGCT--TCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---------hhhccCC--CCCEEEccCCccccchh--hcCCCcc
Confidence 888888888753 4677788888888888765421 1233333 77777777777764333 6777777
Q ss_pred cEEEccCcccccCCCcccCCCCCCceecCCCCcccc
Q 045935 508 TSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCG 543 (587)
Q Consensus 508 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 543 (587)
++|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 181 ~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 777777777764 33 36677777777777777654
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=151.14 Aligned_cols=127 Identities=15% Similarity=0.058 Sum_probs=58.8
Q ss_pred EEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCC-CCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCC
Q 045935 25 NLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFP-PEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPS 103 (587)
Q Consensus 25 ~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (587)
+++++++.+. .+|... .+.+++|++++|.+....+ ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4444444444 344211 1233445555554443322 2244445555555555544433333444455555555555
Q ss_pred CCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCC
Q 045935 104 CSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALP 155 (587)
Q Consensus 104 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~ 155 (587)
|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 5554444444445555555555555554444444445555555555555443
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.1e-17 Score=150.56 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=94.3
Q ss_pred CEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCC
Q 045935 24 PNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPS 103 (587)
Q Consensus 24 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (587)
+.++.+++.+. ++|... . ++|++|++++|.+....+..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l-~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL-P--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC-C--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc-C--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45666666665 566222 1 5666666666666655555666666666666666666655566666666666666666
Q ss_pred CCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCE
Q 045935 104 CSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDS 183 (587)
Q Consensus 104 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~ 183 (587)
|.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+.. +..+..+++|++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------~~~~~~l~~L~~ 156 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-------------KGTFSPLRAIQT 156 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-------------TTTTTTCTTCCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-------------HHHHhCCCCCCE
Confidence 6666544445566666677777666666555666666667777777776654221 223455666777
Q ss_pred EeCCCCccC
Q 045935 184 LLLSSNQFV 192 (587)
Q Consensus 184 L~l~~~~~~ 192 (587)
|++++|.+.
T Consensus 157 L~L~~N~~~ 165 (220)
T 2v9t_B 157 MHLAQNPFI 165 (220)
T ss_dssp EECCSSCEE
T ss_pred EEeCCCCcC
Confidence 777777665
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=9.9e-17 Score=165.63 Aligned_cols=185 Identities=24% Similarity=0.304 Sum_probs=134.8
Q ss_pred CCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEec
Q 045935 47 SLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLG 126 (587)
Q Consensus 47 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 126 (587)
+|++|++++|.+.+ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888874 66555 377888888888887 566 457888888888888876 555 544 88888888
Q ss_pred cccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCccc
Q 045935 127 STQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLK 206 (587)
Q Consensus 127 ~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 206 (587)
+|.+++ ++. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--------------lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~ 183 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM--------------LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLE 183 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC--------------CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc--------------CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCC
Confidence 888875 444 57788888888888752 222 35688888888888875 555 54 8888
Q ss_pred EEecCCCccccccCccccCCCCC-------cEEEcCCcccccccccccccccccccccCcccCCCC-ccEEeccCCCCcc
Q 045935 207 YISLSSNFVSGSIPRELCNSESL-------VEINLDGNLLSGTIEDLVLGNNHIHGSIPEYLSELP-LVVLDLDSNNFTG 278 (587)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~ 278 (587)
.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..++ ++.|++++|.+++
T Consensus 184 ~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~---------------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 184 ALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT---------------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC---------------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred EEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce---------------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 8888888887 5555 543 66 88888888776 5666666677 8888888888887
Q ss_pred ccchhhhh
Q 045935 279 IIPLSLWK 286 (587)
Q Consensus 279 ~~~~~~~~ 286 (587)
.+|..+..
T Consensus 245 ~~p~~l~~ 252 (571)
T 3cvr_A 245 RIRESLSQ 252 (571)
T ss_dssp HHHHHHHH
T ss_pred cCHHHHHH
Confidence 77766543
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=7e-17 Score=147.08 Aligned_cols=134 Identities=21% Similarity=0.289 Sum_probs=67.1
Q ss_pred CCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcc
Q 045935 400 LKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSV 479 (587)
Q Consensus 400 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~ 479 (587)
+++++|++++|.+++..+..+..+++|++|++++|.+.+..+.++..+++|++|++++|.+.. ..+..+....
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-------l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-------LPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-------CCTTTTTTCT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-------cCHhHccCCC
Confidence 345555555555554444445555555555555555554444455555555555555543320 1111111111
Q ss_pred cccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCccc
Q 045935 480 AWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLC 542 (587)
Q Consensus 480 ~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 542 (587)
+|+.|++++|.++...+..|..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 105 --~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 105 --SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp --TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred --CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 3444444444444444555666666666666666666544455556666666666666554
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.3e-17 Score=147.78 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=91.8
Q ss_pred cCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcE
Q 045935 43 TNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGI 122 (587)
Q Consensus 43 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 122 (587)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+. . +..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44555666666666555 333 4555666666666666443 1 235556666666666666666555556666666666
Q ss_pred EEeccccCcccCCccccCCCCCceeeccccc-CCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccC
Q 045935 123 LNLGSTQLNGSIPAELGKCENLKSVLLSFNA-LPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGS 201 (587)
Q Consensus 123 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 201 (587)
|++++|.+++..+..++.+++|++|++++|. +. .++ .+..+++|++|++++|.+++ .+ .+..
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~--------------~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~ 179 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--------------DIM-PLKTLPELKSLNIQFDGVHD-YR-GIED 179 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC--------------CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGG
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc--------------ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhcc
Confidence 6666666665555666666777777777665 33 112 35566677777777777763 22 5667
Q ss_pred CCcccEEecCCCccc
Q 045935 202 CSMLKYISLSSNFVS 216 (587)
Q Consensus 202 ~~~L~~L~l~~~~~~ 216 (587)
+++|++|++++|.+.
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 777777777777665
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1e-16 Score=146.05 Aligned_cols=132 Identities=25% Similarity=0.306 Sum_probs=64.0
Q ss_pred CcEEEccCcccccCCC-ccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhccc
Q 045935 402 LQGLFLGNNQLTDSIP-GSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVA 480 (587)
Q Consensus 402 L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~ 480 (587)
+++|++++|.+++..+ ..+..+++|++|++++|.+.+..+.++..+++|++|++++|.+. +..+..+....
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~- 105 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-------NVQHKMFKGLE- 105 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------CCCGGGGTTCS-
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-------ccCHhHhcCCc-
Confidence 3444455444443322 23444555555555555554443334444444444444443322 11111111111
Q ss_pred ccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCccc
Q 045935 481 WNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLC 542 (587)
Q Consensus 481 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 542 (587)
+|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++.
T Consensus 106 -~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 106 -SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred -CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 3444444444444444555666666666666666666555566666666666666666654
No 110
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.71 E-value=2.2e-16 Score=157.87 Aligned_cols=214 Identities=11% Similarity=0.053 Sum_probs=121.1
Q ss_pred CCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCC
Q 045935 346 EDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGG 425 (587)
Q Consensus 346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 425 (587)
.+|.++.+|+.+.+..+ +..+...+|.++..|+.+.+..+... ....+.....|+.+.+.... +.+....+.++..
T Consensus 179 ~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~ 254 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTD 254 (394)
T ss_dssp TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSS
T ss_pred ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eeccccccccccc
Confidence 34555555555555543 33334445555555665555543321 11223334556666655432 2234445555666
Q ss_pred CcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCC
Q 045935 426 LVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLS 505 (587)
Q Consensus 426 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 505 (587)
++.+.+..+... ....++..+..++.+......+ ....+..+. +|+.+.+.++ +..+...+|.+|.
T Consensus 255 l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----------~~~~F~~~~--~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 255 LESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----------PEKTFYGCS--SLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp CCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE----------CTTTTTTCT--TCCEEEECTT-CCEECTTTTTTCT
T ss_pred ceeEEcCCCcce-eeccccccccccceeccCceee----------ccccccccc--cccccccccc-cceechhhhcCCC
Confidence 666666554332 3444566666666665544221 112233333 6666666554 4435566777888
Q ss_pred CCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhhHHHHH
Q 045935 506 YLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVKYWKI 581 (587)
Q Consensus 506 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l~~ 581 (587)
+|+.+++..+ ++.....+|.+|++|+.+++..+ ++.....+|.+|++|+.+++..+ +..++ .+|.++++|+.
T Consensus 321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~-~~F~~c~~L~~ 392 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYR-YDFEDTTKFKW 392 (394)
T ss_dssp TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGG-GGBCTTCEEEE
T ss_pred CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhh-heecCCCCCcE
Confidence 8888888644 55456677888888888888766 55566677888888888888654 44443 46777766654
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=6.9e-17 Score=168.79 Aligned_cols=186 Identities=25% Similarity=0.315 Sum_probs=132.7
Q ss_pred EccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccc
Q 045935 334 DLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLT 413 (587)
Q Consensus 334 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 413 (587)
.+..+.+.... .+..++.|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+.
T Consensus 27 ~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 27 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred hccCCCccccc--chhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence 44444444322 2456677888888888876542 46778888999998888875433 778888888888888887
Q ss_pred cCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccC
Q 045935 414 DSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFF 493 (587)
Q Consensus 414 ~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l 493 (587)
+. ..+..+++|++|++++|.+.+. ..+..+++|+.|+|++|.+... ..+..+. +|+.|+|++|.+
T Consensus 101 ~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---------~~l~~l~--~L~~L~Ls~N~l 165 (605)
T 1m9s_A 101 DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---------TVLSRLT--KLDTLSLEDNQI 165 (605)
T ss_dssp CC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC---------GGGGSCT--TCSEEECCSSCC
T ss_pred CC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc---------hhhcccC--CCCEEECcCCcC
Confidence 53 3577788888888888888753 4577788888888888766421 2233333 788888888888
Q ss_pred ccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCccccc
Q 045935 494 DGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQ 544 (587)
Q Consensus 494 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 544 (587)
.+..+ +..+++|++|+|++|++++. ..+..+++|+.|+|++|++...
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 75444 77788888888888888743 4577788888888888877643
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=9.3e-17 Score=158.41 Aligned_cols=179 Identities=19% Similarity=0.084 Sum_probs=120.7
Q ss_pred CEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcC-CCCCCcEEEecccccccCCChhhhcCCCccEEecC
Q 045935 24 PNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIG-NLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSP 102 (587)
Q Consensus 24 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (587)
++++++++.+. .+|... .+.+++|+|++|.+....+..+. ++++|++|++++|.++...+..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57888888887 677332 24578888888888766666676 78888888888888876666677788888888888
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCC
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLD 182 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~ 182 (587)
+|+++...+..+..+++|++|++++|.++...+..|..+++|++|+|++|.+....+..+ ..+..+++|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~----------~~~~~l~~L~ 166 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI----------KDGNKLPKLM 166 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT----------C----CTTCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh----------cCcccCCcCC
Confidence 888776666677777888888888887776666777777777777777777652111110 0013456667
Q ss_pred EEeCCCCccCCCCCccccCCCc--ccEEecCCCccc
Q 045935 183 SLLLSSNQFVGRIPPEIGSCSM--LKYISLSSNFVS 216 (587)
Q Consensus 183 ~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~ 216 (587)
.|++++|.++...+..+..++. ++.|++++|.+.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 7777766666444444555554 355666665554
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=6.4e-17 Score=144.86 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=98.5
Q ss_pred CCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCce
Q 045935 67 GNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKS 146 (587)
Q Consensus 67 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 146 (587)
..+++|++|++++|.++ .++ .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45667777777777666 444 56677777777777775543 246666777777777777776656666777777777
Q ss_pred eecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCc-cCCCCCccccCCCcccEEecCCCccccccCccccC
Q 045935 147 VLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQ-FVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCN 225 (587)
Q Consensus 147 L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 225 (587)
|++++|.+.+. .+..+..+++|++|++++|. ++ ..+ .+.++++|++|++++|.+++ .+ .+..
T Consensus 117 L~Ls~n~i~~~-------------~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~ 179 (197)
T 4ezg_A 117 LDISHSAHDDS-------------ILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIED 179 (197)
T ss_dssp EECCSSBCBGG-------------GHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGG
T ss_pred EEecCCccCcH-------------hHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhcc
Confidence 77777775422 23345566677777777776 54 333 46677777777777777763 23 5666
Q ss_pred CCCCcEEEcCCcccc
Q 045935 226 SESLVEINLDGNLLS 240 (587)
Q Consensus 226 ~~~L~~L~l~~~~~~ 240 (587)
+++|++|++++|++.
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 777777777777654
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=7.3e-17 Score=159.15 Aligned_cols=177 Identities=23% Similarity=0.181 Sum_probs=111.8
Q ss_pred cEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCcc-CCCCCcEEEccCcccccCCCccccCCCCCcEEEcCC
Q 045935 355 VYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFG-DSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTG 433 (587)
Q Consensus 355 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~ 433 (587)
+.++++++.+... |..+ .+.++.|++++|.++...+..+. .+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4566666666543 2222 23466777777776655555555 666777777777766665556666666677777776
Q ss_pred CcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEcc
Q 045935 434 NKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLH 513 (587)
Q Consensus 434 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~ 513 (587)
|.+....+..+..+++|++|++++ |.++...+..|..+++|++|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~---------------------------------N~i~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYN---------------------------------NHIVVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCS---------------------------------SCCCEECTTTTTTCTTCCEEECC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCC---------------------------------CcccEECHHHhCCcccCCEEECC
Confidence 666655444555555555555555 44444455667777777788888
Q ss_pred CcccccCCCccc---CCCCCCceecCCCCcccccCChhhcCCCCC--ccccCCCCccee
Q 045935 514 RNKFTGEIPPEL---GNLIQLEYLDVSKNMLCGQIPKKICRLSNL--LYLSFEENRFAV 567 (587)
Q Consensus 514 ~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~i~~ 567 (587)
+|++++..+..+ ..+++|+.|+|++|.++...+..|..++.+ +.|++++|++.+
T Consensus 145 ~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 777774333334 457788888888888875555667777763 778888887765
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2.1e-17 Score=160.90 Aligned_cols=245 Identities=12% Similarity=0.064 Sum_probs=175.4
Q ss_pred ccccceEEccCCccc--ccCCCCcCCCCcccEEEccCccCCCCCCCCCcC--------CCCCCeEecCCCcCCCCCCcCc
Q 045935 327 IQHHGVFDLSFNRLS--CPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSR--------LTNLTILDLSRNELAGSIPPEF 396 (587)
Q Consensus 327 ~~~l~~l~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~i~~~~~~~~ 396 (587)
...|+.+|+++|.+. ......+ +.+..+.+..+. +....|.+ +++|+++++.+ .++.+...+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 566788899999887 2222222 224445555553 34466777 88899999988 7776777788
Q ss_pred cCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcC----ccccccccccCCCCc-eeeccCCcc-----------
Q 045935 397 GDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKL----SGLVPTSLENLKGLT-HLDLSYNKL----------- 460 (587)
Q Consensus 397 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l----~~~~~~~l~~~~~L~-~L~l~~~~i----------- 460 (587)
..|++|+++++++|.+..+.+.+|..+.++.++....... ......+|..|..|+ .+.+.....
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 8889999999998888777778888877777777765321 122334566666666 333322110
Q ss_pred -------ccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCc-
Q 045935 461 -------DVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLE- 532 (587)
Q Consensus 461 -------~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~- 532 (587)
...+.-...........+ ++|+++++++|.++.+...+|.+|++|+++++.+| ++.....+|.+|++|+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~--~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYM--PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHC--TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred ccccceEEEeeeecHHHHHHHHHhc--CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 000000000011111123 39999999999999788889999999999999998 7767889999999999
Q ss_pred eecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhhHHHHHH
Q 045935 533 YLDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVKYWKIF 582 (587)
Q Consensus 533 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l~~~ 582 (587)
.+++.+ .++...+.+|.+|++|+.|++++|.++.++..+|.++++|+.+
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 999999 7876778999999999999999999999999999999988754
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=3.1e-16 Score=143.85 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=113.1
Q ss_pred CCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecC
Q 045935 23 LPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSP 102 (587)
Q Consensus 23 L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (587)
-+.++.+++++. ++|.+. .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456777777776 777332 3778888888888877667778888888888888888764444556778888888888
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCC
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLD 182 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~ 182 (587)
+|+++...+..+..+++|++|++++|.++ .++..+..+++|++|++++|.+.+.. +..+..+++|+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~-------------~~~~~~l~~L~ 162 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP-------------HGAFDRLSSLT 162 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC-------------TTTTTTCTTCC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC-------------HHHHhCCCCCC
Confidence 88887666666777888888888888887 66677777888888888888765221 23356677888
Q ss_pred EEeCCCCccCCC
Q 045935 183 SLLLSSNQFVGR 194 (587)
Q Consensus 183 ~L~l~~~~~~~~ 194 (587)
.|++++|.+...
T Consensus 163 ~L~l~~N~~~c~ 174 (229)
T 3e6j_A 163 HAYLFGNPWDCE 174 (229)
T ss_dssp EEECTTSCBCTT
T ss_pred EEEeeCCCccCC
Confidence 888888887643
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=6e-16 Score=141.94 Aligned_cols=152 Identities=22% Similarity=0.190 Sum_probs=94.1
Q ss_pred CcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEecc
Q 045935 48 LSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGS 127 (587)
Q Consensus 48 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 127 (587)
-+.++.+++.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777665 5554443 6777777777777766566677777777777777777655445566666777777777
Q ss_pred ccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccE
Q 045935 128 TQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKY 207 (587)
Q Consensus 128 ~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 207 (587)
|.++...+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.++...+..+..+++|+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT--------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC--------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc--------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 6666555555566666666666666654 23344455556666666666665444444555566666
Q ss_pred EecCCCccc
Q 045935 208 ISLSSNFVS 216 (587)
Q Consensus 208 L~l~~~~~~ 216 (587)
|++++|.+.
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 666655554
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2e-17 Score=155.11 Aligned_cols=180 Identities=19% Similarity=0.259 Sum_probs=117.6
Q ss_pred ccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCC
Q 045935 8 VLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLP 87 (587)
Q Consensus 8 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 87 (587)
.|.+.+|+. +++++..++++++.+. .++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++. +
T Consensus 8 ~i~~~~pd~--~l~~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~ 79 (263)
T 1xeu_A 8 PINQVFPDP--GLANAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-S 79 (263)
T ss_dssp EHHHHCCSH--HHHHHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-G
T ss_pred CHHHhCCCH--HHHHHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-h
Confidence 455555553 5666777777777776 444 3566777777777777776 344 567777777777777777643 3
Q ss_pred hhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccc
Q 045935 88 PEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPL 167 (587)
Q Consensus 88 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 167 (587)
. +..+++|++|++++|++++. + .+.. ++|++|++++|++++. ..+..+++|+.|++++|.+.+.
T Consensus 80 ~-l~~l~~L~~L~L~~N~l~~l-~-~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~---------- 143 (263)
T 1xeu_A 80 P-LKDLTKLEELSVNRNRLKNL-N-GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI---------- 143 (263)
T ss_dssp G-GTTCSSCCEEECCSSCCSCC-T-TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC----------
T ss_pred h-hccCCCCCEEECCCCccCCc-C-cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC----------
Confidence 3 67777777777777777643 2 2222 6777777777777642 3466777777777777776521
Q ss_pred cCCCCcccccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccc
Q 045935 168 SGPLPSWFGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGS 218 (587)
Q Consensus 168 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 218 (587)
..+..+++|++|++++|.+++. ..+..+++|+.|++++|.++..
T Consensus 144 -----~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 -----VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -----GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -----hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 1355666777777777777644 4566777777777777766633
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3.4e-17 Score=159.52 Aligned_cols=222 Identities=15% Similarity=0.066 Sum_probs=134.3
Q ss_pred CCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCccccccccccccccccccccc
Q 045935 178 WNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIHGSI 257 (587)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~~~~ 257 (587)
|++|+++++.. .++.+...+|.+|++|+.+++++|.++...+.+|..+.++..+........... ....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~----------~~i~ 168 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK----------NRWE 168 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS----------TTTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc----------cccc
Confidence 78888888887 676666677888888888888888887777778877777776665543221000 0011
Q ss_pred CcccCCCC-cc-EEeccCCCCccccchhhhhc---CCccceecccccceeecccccccchhhhHHHHhhcccccccccce
Q 045935 258 PEYLSELP-LV-VLDLDSNNFTGIIPLSLWKN---SKNLIEFSAASNLLEGYLPWEIGNAIALERLVKIHDLSFIQHHGV 332 (587)
Q Consensus 258 ~~~~~~~~-L~-~L~l~~~~~~~~~~~~~~~~---~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 332 (587)
...+..+. ++ .+.+.... .++..++.. ..++..+.+.+
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~---------------------------------- 211 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEG---------------------------------- 211 (329)
T ss_dssp TSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEE----------------------------------
T ss_pred ccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEee----------------------------------
Confidence 12222222 22 23332211 122222211 11222222211
Q ss_pred EEccCCcccccCCCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCc-EEEccCcc
Q 045935 333 FDLSFNRLSCPIPEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQ-GLFLGNNQ 411 (587)
Q Consensus 333 l~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~-~L~L~~~~ 411 (587)
.-...........+++|+.+++++|.+..+...+|.++++|+++++.++ +..+...+|..+++|+ .+++.+ .
T Consensus 212 -----~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 212 -----KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp -----CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred -----eecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 1000000000112567778888877777777777788888888888776 6656667788888888 888877 5
Q ss_pred cccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceee
Q 045935 412 LTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLD 454 (587)
Q Consensus 412 ~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 454 (587)
++.+...+|.+|++|+.++++++.+....+.+|.+|++|+++.
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666677788888888888877777766677888888888775
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=2.4e-16 Score=147.80 Aligned_cols=164 Identities=18% Similarity=0.240 Sum_probs=139.7
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccc
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQ 81 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (587)
++++++.+++.. .+.++++|++|++++|.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.
T Consensus 24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSC
T ss_pred HHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCc
Confidence 567888888554 6899999999999999998 677 578999999999999999844 43 9999999999999999
Q ss_pred cccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcc
Q 045935 82 FTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQ 161 (587)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 161 (587)
+++ ++. +.. ++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+.+.
T Consensus 97 l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---- 165 (263)
T 1xeu_A 97 LKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---- 165 (263)
T ss_dssp CSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC----
T ss_pred cCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch----
Confidence 984 433 333 9999999999999864 4699999999999999999854 3688999999999999998632
Q ss_pred cCCccccCCCCcccccCCCCCEEeCCCCccCCC
Q 045935 162 LSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGR 194 (587)
Q Consensus 162 l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 194 (587)
..+..+++|+.|++++|.++..
T Consensus 166 -----------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -----------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -----------TTSTTCCCCCEEEEEEEEEECC
T ss_pred -----------HHhccCCCCCEEeCCCCcccCC
Confidence 3467889999999999998744
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=2.8e-14 Score=141.66 Aligned_cols=209 Identities=9% Similarity=0.041 Sum_probs=125.5
Q ss_pred CCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCC
Q 045935 346 EDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGG 425 (587)
Q Consensus 346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 425 (587)
.+|..|++|+.+++.+|.+..+....|. +.+|+.+.+..+ +......+|..+++|+.+.+..+ ++.+...+|.+ .+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG 249 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence 4455555555555555555544444444 355555555533 44344455555666666666543 33344444544 45
Q ss_pred CcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCC
Q 045935 426 LVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLS 505 (587)
Q Consensus 426 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 505 (587)
|+.+.+.+ .+......+|.+|++|+.+++.++.+.. .........+|..+. +|+.+++.+ .+..+...+|.+|+
T Consensus 250 L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~--~~~~~I~~~aF~~c~--~L~~l~l~~-~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 250 ITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFND--DPEAMIHPYCLEGCP--KLARFEIPE-SIRILGQGLLGGNR 323 (401)
T ss_dssp CSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCC--CTTCEECTTTTTTCT--TCCEECCCT-TCCEECTTTTTTCC
T ss_pred ccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccC--CcccEECHHHhhCCc--cCCeEEeCC-ceEEEhhhhhcCCC
Confidence 66666632 3443444566666666666665544320 011112233444444 666666663 35546677888999
Q ss_pred CCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCC-CCccccCCCCcce
Q 045935 506 YLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLS-NLLYLSFEENRFA 566 (587)
Q Consensus 506 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~ 566 (587)
+|+.++|..+ ++.....+|.+| +|+.+++++|.+....+..|.+++ .++.|++-.+.+.
T Consensus 324 ~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 9999999665 665677888999 999999999988777777888875 6788888777544
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=6.6e-18 Score=175.47 Aligned_cols=178 Identities=19% Similarity=0.163 Sum_probs=90.7
Q ss_pred cccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCc-------------cccCCCCCcCCCCCCcEEE-ecccccc
Q 045935 18 GELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNS-------------LYGSFPPEIGNLKNLTHFF-LGINQFT 83 (587)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~ 83 (587)
..+++|+.|+|++|.+. .+| ..++++++|+.|++++|. ..+..|..+..+++|++|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp-~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhH-HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45666666777666665 666 555666666666665543 2223344445555555555 3333221
Q ss_pred cCCCh------hhhc--CCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCC
Q 045935 84 GQLPP------EIGE--LSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALP 155 (587)
Q Consensus 84 ~~~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~ 155 (587)
.++. .+.. ...|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 0000 0111 1235555555555553 333 555555555555555555 44555555555555555555543
Q ss_pred CCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCCC-CccccCCCcccEEecCCCccc
Q 045935 156 GSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGRI-PPEIGSCSMLKYISLSSNFVS 216 (587)
Q Consensus 156 ~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 216 (587)
+ +| .+..+++|+.|++++|.+++.. |..+.++++|+.|++++|.++
T Consensus 500 ~--------------lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 500 N--------------VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp C--------------CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred C--------------Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 1 22 3444555555555555555433 455555555555555555555
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=3.5e-15 Score=129.81 Aligned_cols=133 Identities=17% Similarity=0.109 Sum_probs=100.5
Q ss_pred cCCCCEEeCCCCcCC-CCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccE
Q 045935 20 LTQLPNLLLGNNLLS-GSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEI 98 (587)
Q Consensus 20 ~~~L~~L~l~~~~~~-~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 98 (587)
.++|++|++++|.+. +.+| ..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 477888888888886 5677 5578888888888888887744 67788888888888888888667777777888888
Q ss_pred EecCCCCCccCC-ccccccCCCCcEEEeccccCcccCC---ccccCCCCCceeecccccCC
Q 045935 99 FSSPSCSITGPL-PEELSNYGSSGILNLGSTQLNGSIP---AELGKCENLKSVLLSFNALP 155 (587)
Q Consensus 99 L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~L~~n~~~ 155 (587)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888888877542 2567777788888888887774443 36677777777777777654
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.9e-15 Score=128.58 Aligned_cols=129 Identities=18% Similarity=0.144 Sum_probs=101.8
Q ss_pred ccCCCCEEeCCCCcCC-CCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCcc
Q 045935 19 ELTQLPNLLLGNNLLS-GSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLE 97 (587)
Q Consensus 19 ~~~~L~~L~l~~~~~~-~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 97 (587)
..++|++|++++|.+. +.+| ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3477889999999887 6777 6778889999999999888744 6788888999999998888866777777788888
Q ss_pred EEecCCCCCccC-CccccccCCCCcEEEeccccCcccCC---ccccCCCCCceeecc
Q 045935 98 IFSSPSCSITGP-LPEELSNYGSSGILNLGSTQLNGSIP---AELGKCENLKSVLLS 150 (587)
Q Consensus 98 ~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~L~ 150 (587)
+|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888888888763 34677788888888888888775544 467777788877765
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=4.7e-14 Score=140.01 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=89.2
Q ss_pred cCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEE
Q 045935 20 LTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIF 99 (587)
Q Consensus 20 ~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 99 (587)
+..++.+.+.+. ++ .|+..+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+......+|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 344555555332 33 3444455543 4555555443 333334444443 355555543 2332333445555555555
Q ss_pred ecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcc-----cCCccc----cCC
Q 045935 100 SSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQ-----LSELPL----SGP 170 (587)
Q Consensus 100 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-----l~~l~~----~~~ 170 (587)
++..++++.....+|. +.+|+.+.+..+ ++.....+|..|++|+.+++..+- ....... +..+.+ ..-
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l-~~I~~~aF~~~~L~~i~lp~~i~~I 262 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENV-STIGQEAFRESGITTVKLPNGVTNI 262 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTC-CEECTTTTTTCCCSEEEEETTCCEE
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCc-cCccccccccCCccEEEeCCCccEE
Confidence 5555544443333343 345555555432 333444445555555555554321 1000000 000000 000
Q ss_pred CCcccccCCCCCEEeCCCCccC-----CCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCC
Q 045935 171 LPSWFGKWNQLDSLLLSSNQFV-----GRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDG 236 (587)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 236 (587)
-...|.+|++|+.+++.++.+. .....+|.+|++|+.+.+.+ .++.....+|.+|.+|+.+.+..
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 0233455555555555544332 23334455555555555552 34444445555555555555543
No 126
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.58 E-value=3e-13 Score=134.99 Aligned_cols=109 Identities=11% Similarity=0.251 Sum_probs=56.1
Q ss_pred CCCcCCCCcccEEEccCccCCCCCCCCCcCCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCC
Q 045935 345 PEDLGNCTVVVYLLLSNNMLSSKIPGSRSRLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLG 424 (587)
Q Consensus 345 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 424 (587)
..+|..|..|+.+.+.+... .+...+|.+++.|+.+.+.. .++.....+|..|.+|+.+.+..+ ++.+...+|.+|.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 34556666666666654332 23445555666666666642 233344445555566666655543 3334445555555
Q ss_pred CCcEEEcCCCcCccccccccccCCCCceeeccC
Q 045935 425 GLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSY 457 (587)
Q Consensus 425 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~ 457 (587)
+|+.+.+..+ +......+|.+|++|+.+++.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 5555555432 3333444555555555555554
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.6e-14 Score=128.46 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=97.3
Q ss_pred CEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCC-CcCCCCCCcEEEecccccccCCChhhhcCCCccEEecC
Q 045935 24 PNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPP-EIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSP 102 (587)
Q Consensus 24 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (587)
++++++++++. ++|... . ++|++|++++|.+....+. .|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~-~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI-P--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCC-C--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCC-C--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67888888886 777333 2 3788888888887755443 37778888888888888876667777888888888888
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCC
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPG 156 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 156 (587)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 888877777777778888888888888877777777777888888888877654
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=9.8e-15 Score=129.80 Aligned_cols=128 Identities=25% Similarity=0.322 Sum_probs=115.6
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCc-ccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEeccc
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPV-SLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGIN 80 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 80 (587)
++++++.++ .+|..+.. ++++|++++|.+. .++. +.|.++++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 13 l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 13 VDCTGRGLK-EIPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EECTTSCCS-SCCSCCCT--TCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCCCcC-cCccCCCC--CCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 688999996 77776654 9999999999998 5553 46899999999999999999888999999999999999999
Q ss_pred ccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCccc
Q 045935 81 QFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGS 133 (587)
Q Consensus 81 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 133 (587)
.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99987778899999999999999999998899999999999999999998744
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=9.5e-16 Score=164.45 Aligned_cols=152 Identities=23% Similarity=0.270 Sum_probs=84.9
Q ss_pred cccCCCccccccCccccccCCCCEEeCCC-----CcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEE
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGN-----NLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFF 76 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 76 (587)
|+|+++.++. .+..+.....|+.+.+++ +.+. ++...|..++.|+.|+|++|.+. .++..+..+++|++|+
T Consensus 178 l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 178 IELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLY 253 (727)
T ss_dssp -----------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCB
T ss_pred EEeeCCCCCc-chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEE
Confidence 4566666664 344444444444443332 2222 33366777777888888877776 5666666777788888
Q ss_pred ecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCC
Q 045935 77 LGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPG 156 (587)
Q Consensus 77 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 156 (587)
|++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+.+
T Consensus 254 Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 254 LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred eeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 8887777 67777777888888888888777 56777777778888888887776 556667777788888888877765
Q ss_pred CCCc
Q 045935 157 SLPE 160 (587)
Q Consensus 157 ~~~~ 160 (587)
..|.
T Consensus 331 ~~p~ 334 (727)
T 4b8c_D 331 QFLK 334 (727)
T ss_dssp HHHH
T ss_pred CChH
Confidence 4444
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=9.9e-15 Score=126.96 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=37.8
Q ss_pred CCCcEEEccCCccc-cCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEE
Q 045935 46 QSLSHLDVSNNSLY-GSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILN 124 (587)
Q Consensus 46 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 124 (587)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.++..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555544 34444444555555555555544422 3344444444444444444433333333344444444
Q ss_pred eccccCc
Q 045935 125 LGSTQLN 131 (587)
Q Consensus 125 l~~~~~~ 131 (587)
+++|.++
T Consensus 102 Ls~N~l~ 108 (168)
T 2ell_A 102 LSGNKLK 108 (168)
T ss_dssp CBSSSCC
T ss_pred ccCCccC
Confidence 4444433
No 131
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.55 E-value=7.3e-13 Score=132.21 Aligned_cols=131 Identities=13% Similarity=0.151 Sum_probs=60.8
Q ss_pred cCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchh
Q 045935 394 PEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNE 473 (587)
Q Consensus 394 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 473 (587)
.+|..+..|+.+.+.++... +...++.++++|+.+.+.. .+......+|.+|.+|+.+++..+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--------------- 321 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--------------- 321 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT---------------
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc---------------
Confidence 34555555555555443322 3444455555555555542 233333445555555555555431
Q ss_pred hhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCC
Q 045935 474 LFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLS 553 (587)
Q Consensus 474 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 553 (587)
++.+...+|.+|.+|+++.+..+ ++.....+|.+|++|+.+++.++... . .++..+.
T Consensus 322 -------------------v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~~~~ 378 (394)
T 4gt6_A 322 -------------------ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NAISTDS 378 (394)
T ss_dssp -------------------CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCBCCC
T ss_pred -------------------ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h--hhhhccC
Confidence 11133345556666666666433 33344455666666666666655432 1 3455556
Q ss_pred CCccccCCCCc
Q 045935 554 NLLYLSFEENR 564 (587)
Q Consensus 554 ~L~~L~l~~n~ 564 (587)
.|+.+.+..+.
T Consensus 379 ~L~~i~i~~~~ 389 (394)
T 4gt6_A 379 GLQNLPVAPGS 389 (394)
T ss_dssp CC---------
T ss_pred CCCEEEeCCCC
Confidence 66666655543
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=6.6e-17 Score=167.95 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=52.6
Q ss_pred cccCCCCCEEeCCCCccCCCCCccccCCCcccEEecCCCccccccCccccCCCCCcEEEcCCcccccccccccccccccc
Q 045935 175 FGKWNQLDSLLLSSNQFVGRIPPEIGSCSMLKYISLSSNFVSGSIPRELCNSESLVEINLDGNLLSGTIEDLVLGNNHIH 254 (587)
Q Consensus 175 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~l~~~~~~ 254 (587)
+..+++|+.|++++|.++ .+|..++++++|+.|++++|.+++ +| .+..+++|+.|++++|.++
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~-------------- 521 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ-------------- 521 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC--------------
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCC--------------
Confidence 444555555555555555 445555555555555555555553 33 4555555555555555444
Q ss_pred ccc--CcccCCCC-ccEEeccCCCCccccch--hhhhcCCccceec
Q 045935 255 GSI--PEYLSELP-LVVLDLDSNNFTGIIPL--SLWKNSKNLIEFS 295 (587)
Q Consensus 255 ~~~--~~~~~~~~-L~~L~l~~~~~~~~~~~--~~~~~~~~L~~l~ 295 (587)
.. |..+..++ |+.|++++|.+++..+. .+...+++|+.|+
T Consensus 522 -~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 522 -QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 22 44455555 55555555555543221 2233366676664
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=1.5e-15 Score=162.91 Aligned_cols=191 Identities=21% Similarity=0.209 Sum_probs=111.4
Q ss_pred CCCCEEeCCCCcCCCCcCcccccCCCCCcEEEcc-----CCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCC
Q 045935 21 TQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVS-----NNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSL 95 (587)
Q Consensus 21 ~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~-----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 95 (587)
+.++.|+|.++.+. .++ ..+.....|+.+.+. .+.+. ..+..+..+++|++|+|++|.+. .+|..+..+++
T Consensus 173 ~~~~~l~L~~n~~~-~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EAN-QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCC-cch-hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 56788888888876 455 223333444444433 33333 45677888899999999999888 77777888999
Q ss_pred ccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCccc
Q 045935 96 LEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWF 175 (587)
Q Consensus 96 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~ 175 (587)
|++|++++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..|
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~--------------~lp~~~ 312 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT--------------TLPWEF 312 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC--------------CCCSST
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC--------------ccChhh
Confidence 999999999988 77888899999999999999988 67888888999999999999875 456667
Q ss_pred ccCCCCCEEeCCCCccCCCCCccccCCC-cccEEecCCCccccccCccccCCCCCcEEEcCCc
Q 045935 176 GKWNQLDSLLLSSNQFVGRIPPEIGSCS-MLKYISLSSNFVSGSIPRELCNSESLVEINLDGN 237 (587)
Q Consensus 176 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 237 (587)
..+++|++|++++|.+++..|..+..+. ....+++++|.+++..|. .|+.|+++.|
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 7888999999999998877666665432 223466777777766654 3445555554
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=5.6e-15 Score=125.68 Aligned_cols=124 Identities=21% Similarity=0.178 Sum_probs=109.7
Q ss_pred CcccCCCccc-cccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecc
Q 045935 1 FRYLSGNVLN-GTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGI 79 (587)
Q Consensus 1 ~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 79 (587)
+|++++|.++ +.+|..+.++++|++|++++|.+. .+ ..+.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 3789999999 889999999999999999999998 44 5789999999999999999976787788899999999999
Q ss_pred cccccC-CChhhhcCCCccEEecCCCCCccCCc---cccccCCCCcEEEecc
Q 045935 80 NQFTGQ-LPPEIGELSLLEIFSSPSCSITGPLP---EELSNYGSSGILNLGS 127 (587)
Q Consensus 80 ~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~ 127 (587)
|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 98 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 98 NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999852 34788999999999999999987765 5789999999998763
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=4.7e-14 Score=125.29 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=100.9
Q ss_pred CEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCC
Q 045935 24 PNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPS 103 (587)
Q Consensus 24 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (587)
++++++++.+. ++|.+. .++|++|++++|.+. .+|..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 57788888887 777433 257888888888887 6667788888888888888888866667788888888888888
Q ss_pred CCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCC
Q 045935 104 CSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALP 155 (587)
Q Consensus 104 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~ 155 (587)
|.++...+.++..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8888777777888888888888888888666667888888888888888865
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=7.7e-14 Score=123.90 Aligned_cols=127 Identities=22% Similarity=0.281 Sum_probs=73.3
Q ss_pred cEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccc
Q 045935 49 SHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGST 128 (587)
Q Consensus 49 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 128 (587)
++++++++.+. .+|..+. ++|++|++++|.++ .+|..+.++++|++|++++|.++...+.+|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45566666555 4444332 45666666666665 45556666666666666666666555555666666666666666
Q ss_pred cCcccCCccccCCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccC
Q 045935 129 QLNGSIPAELGKCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFV 192 (587)
Q Consensus 129 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~ 192 (587)
+++...+..|..+++|++|++++|.+.... +..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~-------------~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVP-------------EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCC-------------TTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeC-------------hhhhhcCccccEEEeCCCCee
Confidence 666555555666666666666666654211 122445556666666666654
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=2.5e-13 Score=119.16 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=92.7
Q ss_pred CCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecC
Q 045935 23 LPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSP 102 (587)
Q Consensus 23 L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (587)
.+.++++++++. .+|... .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467778788777 677322 3678888888888775555567778888888888887775545556777778888887
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccCCC
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNALPG 156 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 156 (587)
+|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 777776666666777777777777777775555556677777777777777653
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=2.3e-13 Score=119.39 Aligned_cols=128 Identities=21% Similarity=0.223 Sum_probs=110.7
Q ss_pred cccCCCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccc
Q 045935 2 RYLSGNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQ 81 (587)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 81 (587)
++++++.++ .+|..+ .++|++|++++|.+. .++...|.++++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 12 l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 12 IRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 567888887 455444 379999999999998 6776788999999999999999996666778999999999999999
Q ss_pred cccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCccc
Q 045935 82 FTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGS 133 (587)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 133 (587)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 9966666789999999999999999976666678899999999999998744
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=8.5e-14 Score=121.93 Aligned_cols=134 Identities=15% Similarity=0.088 Sum_probs=102.4
Q ss_pred ccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCC
Q 045935 15 RQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELS 94 (587)
Q Consensus 15 ~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 94 (587)
..+.++++|++|++++|.+. .++ ......++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 45778889999999999998 676 5444445999999999998854 5788899999999999988854445558888
Q ss_pred CccEEecCCCCCccCCcc--ccccCCCCcEEEeccccCcccCCc----cccCCCCCceeecccccC
Q 045935 95 LLEIFSSPSCSITGPLPE--ELSNYGSSGILNLGSTQLNGSIPA----ELGKCENLKSVLLSFNAL 154 (587)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~L~~n~~ 154 (587)
+|++|++++|.++. ++. .+..+++|++|++++|.++ ..+. .+..+++|+.|++++|..
T Consensus 89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888888864 343 6777888888888888877 3344 366777777777777764
No 140
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.47 E-value=8.3e-12 Score=124.03 Aligned_cols=188 Identities=13% Similarity=0.058 Sum_probs=103.4
Q ss_pred CCCCCCeEecCCCcCCCCCCcCccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCcee
Q 045935 374 RLTNLTILDLSRNELAGSIPPEFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHL 453 (587)
Q Consensus 374 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 453 (587)
.+..+..+.+..... .....++..+..|+.+.+..+ +..+....+.++..|+.+.+..+ +......++.+|.+|+.+
T Consensus 192 ~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 334455554443322 133345555666666666544 23344455556666666666554 333444566666666666
Q ss_pred eccCCccccccccccccchhhhhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCce
Q 045935 454 DLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEY 533 (587)
Q Consensus 454 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 533 (587)
.+..+-- .....++..+. +|+.+.+.++.++.+...+|.+|.+|+.++|..+ ++.....+|.+|++|+.
T Consensus 269 ~l~~~i~--------~i~~~aF~~c~--~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 269 NFYAKVK--------TVPYLLCSGCS--NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp EECCCCS--------EECTTTTTTCT--TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred cccccce--------ecccccccccc--ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 6654211 11222333333 6666666666665556667778888888888654 44455677788888888
Q ss_pred ecCCCCcccccCChhhcCCCCCccccCCCCcceecCcCchhhhHHHH
Q 045935 534 LDVSKNMLCGQIPKKICRLSNLLYLSFEENRFAVLGINRLDYVKYWK 580 (587)
Q Consensus 534 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l~ 580 (587)
+.+..+ ++.....+|.+|..++ +. ..+.......|..+++||
T Consensus 338 i~ip~~-v~~I~~~aF~~c~~~~-~~---~~~~~~~~~~f~~~~~Lk 379 (379)
T 4h09_A 338 ISYPKS-ITLIESGAFEGSSITK-YP---TWLSKGNNGDYGIFTKIK 379 (379)
T ss_dssp CCCCTT-CCEECTTTTTTSSCCC-CC---TTCEECTTSCEEC-----
T ss_pred EEECCc-cCEEchhHhhCCCCCc-Cc---cccccCceeehhhhhhcC
Confidence 887654 5545667777775443 21 234555555666666553
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1.6e-15 Score=135.91 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=115.7
Q ss_pred ccccCCCCEEeCCCCcCCCCcCc-----ccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhh
Q 045935 17 IGELTQLPNLLLGNNLLSGSLPV-----SLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIG 91 (587)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~i~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 91 (587)
+.....++.++++.+.+.+.+|. ..+.++++|++|++++|.+.. +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 55666777777777777666551 267788888888888888874 55 7778888888888888887 6677777
Q ss_pred cCCCccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCC-ccccCCCCCceeecccccCCCCCCcccCCccccCC
Q 045935 92 ELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIP-AELGKCENLKSVLLSFNALPGSLPEQLSELPLSGP 170 (587)
Q Consensus 92 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~ 170 (587)
.+++|++|++++|.+++ ++ .+..+++|++|++++|.++.... ..+..+++|++|++++|.+.+..|..-. ....
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~---~~~~ 165 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA---TSEY 165 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT---HHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccc---hHHH
Confidence 77888888888888875 33 67778888888888888874322 4677888888888888887543221000 0000
Q ss_pred CCcccccCCCCCEEeCCCCccC
Q 045935 171 LPSWFGKWNQLDSLLLSSNQFV 192 (587)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~~~ 192 (587)
....+..+++|+.|+ ++.++
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHhCCCcEEEC--CcccC
Confidence 012256788888887 55554
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.9e-13 Score=119.68 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=24.1
Q ss_pred CccEEecCCCCCccCCccccccCCCCcEEEeccccCcccCCccccCCCCCceeecccccC
Q 045935 95 LLEIFSSPSCSITGPLPEELSNYGSSGILNLGSTQLNGSIPAELGKCENLKSVLLSFNAL 154 (587)
Q Consensus 95 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~~ 154 (587)
+|++|++++|.+++. ..+..+++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 444444444443322 2344444444444444444432222234444444444444443
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=4.5e-15 Score=132.90 Aligned_cols=135 Identities=25% Similarity=0.261 Sum_probs=84.2
Q ss_pred cccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccCCc
Q 045935 419 SLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGGLP 498 (587)
Q Consensus 419 ~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 498 (587)
.+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+. .++..+.... +|+.|++++|.+++ ++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~--------~l~~~~~~~~--~L~~L~L~~N~l~~-l~ 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--------KIENLDAVAD--TLEELWISYNQIAS-LS 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--------SCSSHHHHHH--HCSEEEEEEEECCC-HH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--------cccchhhcCC--cCCEEECcCCcCCc-CC
Confidence 45556666666666666554 33 5555666666666665543 1222222222 67777777777763 33
Q ss_pred hhccCCCCCcEEEccCcccccCCC-cccCCCCCCceecCCCCcccccCCh----------hhcCCCCCccccCCCCccee
Q 045935 499 RSLSNLSYLTSVDLHRNKFTGEIP-PELGNLIQLEYLDVSKNMLCGQIPK----------KICRLSNLLYLSFEENRFAV 567 (587)
Q Consensus 499 ~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~----------~l~~l~~L~~L~l~~n~i~~ 567 (587)
.+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|. .+..+++|+.|+ +|+++.
T Consensus 110 -~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp -HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred -ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 56777778888888887773221 3567778888888888877654443 367788888776 777765
Q ss_pred cC
Q 045935 568 LG 569 (587)
Q Consensus 568 ~~ 569 (587)
..
T Consensus 187 ~e 188 (198)
T 1ds9_A 187 DE 188 (198)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.38 E-value=4.5e-11 Score=118.68 Aligned_cols=171 Identities=14% Similarity=0.089 Sum_probs=131.9
Q ss_pred CccCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCccccccccccCCCCceeeccCCccccccccccccchhh
Q 045935 395 EFGDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNEL 474 (587)
Q Consensus 395 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 474 (587)
.+..+..+..+.+...... .....+..+..|+.+.+..+ +......++..|..|+.+.+..+--. ....+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~--------I~~~a 258 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTS--------IGSFL 258 (379)
T ss_dssp ECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCE--------ECTTT
T ss_pred cccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccE--------eCccc
Confidence 3445566777777665332 45566777889999999765 44455678899999999999864222 23344
Q ss_pred hhhcccccccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCC
Q 045935 475 FTNSVAWNIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSN 554 (587)
Q Consensus 475 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 554 (587)
+..+. +|+.+.+..+ +......+|.+|.+|+.+.+.++.++.....+|.+|.+|+.++|..+ ++.....+|.+|.+
T Consensus 259 F~~~~--~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 259 LQNCT--ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTCT--TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cceee--hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 55555 8999999765 44466778999999999999999888777899999999999999765 66567789999999
Q ss_pred CccccCCCCcceecCcCchhhhHHHH
Q 045935 555 LLYLSFEENRFAVLGINRLDYVKYWK 580 (587)
Q Consensus 555 L~~L~l~~n~i~~~~~~~~~~~~~l~ 580 (587)
|+++.+..+ ++.++..+|.++..++
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred CCEEEECCc-cCEEchhHhhCCCCCc
Confidence 999999765 9999999999886543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=1.4e-14 Score=142.45 Aligned_cols=162 Identities=20% Similarity=0.121 Sum_probs=79.2
Q ss_pred CCCcEEEccCcccccCCCccc-cCCCCCcEEEcCCCcCcccccccc-----ccCCCCceeeccCCccccccccccccchh
Q 045935 400 LKLQGLFLGNNQLTDSIPGSL-GRLGGLVKLNLTGNKLSGLVPTSL-----ENLKGLTHLDLSYNKLDVQHNKLSGPLNE 473 (587)
Q Consensus 400 ~~L~~L~L~~~~~~~~~~~~l-~~~~~L~~L~L~~~~l~~~~~~~l-----~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 473 (587)
++|++|++++|.+++.....+ ..+++|++|++++|.++......+ ...++|++|++++|.++.. ....+..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~---~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA---GVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH---HHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH---HHHHHHH
Confidence 355555555555442222111 123455666666665543322222 2345566666666554311 1111222
Q ss_pred hhhhcccccccEEecccccCccC----CchhccCCCCCcEEEccCcccccC----CCcccCCCCCCceecCCCCcccccC
Q 045935 474 LFTNSVAWNIATLNLSNNFFDGG----LPRSLSNLSYLTSVDLHRNKFTGE----IPPELGNLIQLEYLDVSKNMLCGQI 545 (587)
Q Consensus 474 ~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~ 545 (587)
.+.... +|++|+|++|.+++. ++..+..+++|++|+|++|.+++. +...+..+++|++|+|++|.|.+..
T Consensus 178 ~L~~~~--~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 178 GLAGNT--SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHTCS--SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHhcCC--CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 222223 566666666666532 244556667777777777777642 2334445677788888887776544
Q ss_pred ChhhcCCCC-----Ccccc--CCCCcce
Q 045935 546 PKKICRLSN-----LLYLS--FEENRFA 566 (587)
Q Consensus 546 ~~~l~~l~~-----L~~L~--l~~n~i~ 566 (587)
...+..... |+.+. +.+|.++
T Consensus 256 ~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 256 RQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 444432211 55555 5555544
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=8.9e-12 Score=108.05 Aligned_cols=89 Identities=22% Similarity=0.185 Sum_probs=74.2
Q ss_pred cccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCC
Q 045935 482 NIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFE 561 (587)
Q Consensus 482 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 561 (587)
+|+.|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 67778888888876667788889999999999999986666677888999999999999987666778889999999999
Q ss_pred CCcceecCc
Q 045935 562 ENRFAVLGI 570 (587)
Q Consensus 562 ~n~i~~~~~ 570 (587)
+|++.....
T Consensus 111 ~N~~~c~c~ 119 (170)
T 3g39_A 111 NNPWDCACS 119 (170)
T ss_dssp SSCBCTTBG
T ss_pred CCCCCCCch
Confidence 998887643
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=5.8e-14 Score=138.00 Aligned_cols=172 Identities=23% Similarity=0.211 Sum_probs=122.8
Q ss_pred CCCcEEEccCcccccCCCccc----c-CCCCCcEEEcCCCcCcccccccc-ccCCCCceeeccCCccccccccccccchh
Q 045935 400 LKLQGLFLGNNQLTDSIPGSL----G-RLGGLVKLNLTGNKLSGLVPTSL-ENLKGLTHLDLSYNKLDVQHNKLSGPLNE 473 (587)
Q Consensus 400 ~~L~~L~L~~~~~~~~~~~~l----~-~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 473 (587)
+.|++|++++|.++......+ . .++.|++|++++|.++......+ ..+++|++|++++|.+...+ ...+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~---~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA---CKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH---HHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH---HHHHHH
Confidence 467777777777654332222 2 23799999999999875433333 44678999999998775211 111111
Q ss_pred hhhhcccccccEEecccccCccC----CchhccCCCCCcEEEccCcccccC----CCcccCCCCCCceecCCCCcccc--
Q 045935 474 LFTNSVAWNIATLNLSNNFFDGG----LPRSLSNLSYLTSVDLHRNKFTGE----IPPELGNLIQLEYLDVSKNMLCG-- 543 (587)
Q Consensus 474 ~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~-- 543 (587)
.+.. ..++|++|+|++|.+++. ++..+..+++|++|+|++|.+++. +...+..+++|++|+|++|.|.+
T Consensus 149 ~L~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLH-DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHS-TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHh-cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 2211 123899999999999753 445557899999999999999853 35667778899999999999975
Q ss_pred --cCChhhcCCCCCccccCCCCcceecCcCchhh
Q 045935 544 --QIPKKICRLSNLLYLSFEENRFAVLGINRLDY 575 (587)
Q Consensus 544 --~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~ 575 (587)
.++.++..+++|++|++++|+|+..+...+..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 34455667899999999999998887766644
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=2e-11 Score=105.79 Aligned_cols=105 Identities=18% Similarity=0.111 Sum_probs=71.0
Q ss_pred CCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecC
Q 045935 23 LPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSP 102 (587)
Q Consensus 23 L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (587)
.++++++++.+. ++|... .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 467777777777 677333 2677777777777776667777777777777777777775444555667777777777
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCc
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLN 131 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 131 (587)
+|+++...+..+..+++|++|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 77666555555666666666666666654
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=2.7e-11 Score=105.35 Aligned_cols=98 Identities=22% Similarity=0.248 Sum_probs=77.7
Q ss_pred cccEEecccccCccCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCcccccCChhhcCCCCCccccCC
Q 045935 482 NIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLCGQIPKKICRLSNLLYLSFE 561 (587)
Q Consensus 482 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 561 (587)
+|+.|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 67778888888876677888899999999999999986655667889999999999999986666668889999999999
Q ss_pred CCcceecCcCchhhhHHHH
Q 045935 562 ENRFAVLGINRLDYVKYWK 580 (587)
Q Consensus 562 ~n~i~~~~~~~~~~~~~l~ 580 (587)
+|++.....+ +..+..|.
T Consensus 114 ~N~~~c~~~~-~~~l~~~~ 131 (174)
T 2r9u_A 114 NNPWDCECRD-IMYLRNWV 131 (174)
T ss_dssp SSCBCTTBGG-GHHHHHHH
T ss_pred CCCccccccc-HHHHHHHH
Confidence 9998876432 33444443
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=3.8e-11 Score=104.39 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=64.9
Q ss_pred CEEeCCCCcCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCC
Q 045935 24 PNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPS 103 (587)
Q Consensus 24 ~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 103 (587)
+.++++++.+. ++|.+. .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777776 677332 26677777777777766666677777777777777766643333455666666666666
Q ss_pred CCCccCCccccccCCCCcEEEeccccCc
Q 045935 104 CSITGPLPEELSNYGSSGILNLGSTQLN 131 (587)
Q Consensus 104 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 131 (587)
|.++...+..+..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6665444444555556666666555554
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=1.1e-09 Score=107.32 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=70.2
Q ss_pred EEeCCCC-cCCCCcCcccccCCCCCcEEEccC-CccccCCCCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecC
Q 045935 25 NLLLGNN-LLSGSLPVSLFTNLQSLSHLDVSN-NSLYGSFPPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSP 102 (587)
Q Consensus 25 ~L~l~~~-~~~~~i~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 102 (587)
.++.+++ ++. .+| . +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+++
T Consensus 12 ~v~~~~~n~l~-~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 666 577 3 66777777777774 77765555667777777777777777776666667777777777777
Q ss_pred CCCCccCCccccccCCCCcEEEeccccCc
Q 045935 103 SCSITGPLPEELSNYGSSGILNLGSTQLN 131 (587)
Q Consensus 103 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 131 (587)
+|+++...+..+..++ |++|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7777655444455444 777777777765
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=8.2e-11 Score=114.43 Aligned_cols=163 Identities=16% Similarity=0.196 Sum_probs=76.6
Q ss_pred cCCCCCcEEEccCcccccCCCccccCCCCCcEEEcCCCcCcccccccc--ccCCCCceeeccCCccccccccccccchhh
Q 045935 397 GDSLKLQGLFLGNNQLTDSIPGSLGRLGGLVKLNLTGNKLSGLVPTSL--ENLKGLTHLDLSYNKLDVQHNKLSGPLNEL 474 (587)
Q Consensus 397 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 474 (587)
..+|+|+.|.+++|.-.. .+. + ..++|++|++..|.+.......+ ..+|+|++|+|+.+.-...+......+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 445566666665542111 111 2 24566666666555543222222 245666666654211000000000011111
Q ss_pred hhhcccccccEEecccccCccCCchhc---cCCCCCcEEEccCcccccC----CCcccCCCCCCceecCCCCcccccCCh
Q 045935 475 FTNSVAWNIATLNLSNNFFDGGLPRSL---SNLSYLTSVDLHRNKFTGE----IPPELGNLIQLEYLDVSKNMLCGQIPK 547 (587)
Q Consensus 475 ~~~~~~~~L~~L~L~~~~l~~~~~~~~---~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~ 547 (587)
+....+|+|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|++++|.+.+....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 111112366666666666653222222 2456777777777776642 223334567777777777777654333
Q ss_pred hhcC-CCCCccccCCCCc
Q 045935 548 KICR-LSNLLYLSFEENR 564 (587)
Q Consensus 548 ~l~~-l~~L~~L~l~~n~ 564 (587)
.+.. + .-.+++++++
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 3433 2 2456666665
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.93 E-value=2.6e-09 Score=104.54 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=50.0
Q ss_pred EEccCC-ccccCCCCCcCCCCCCcEEEecc-cccccCCChhhhcCCCccEEecCCCCCccCCccccccCCCCcEEEeccc
Q 045935 51 LDVSNN-SLYGSFPPEIGNLKNLTHFFLGI-NQFTGQLPPEIGELSLLEIFSSPSCSITGPLPEELSNYGSSGILNLGST 128 (587)
Q Consensus 51 L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 128 (587)
++.+++ .+. .+|. +..+++|++|+|++ |.+.+..+..|..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 444 3444 55555555555553 5554433344555555555555555555544445555555555555555
Q ss_pred cCcccCCccccCCCCCceeecccccCC
Q 045935 129 QLNGSIPAELGKCENLKSVLLSFNALP 155 (587)
Q Consensus 129 ~~~~~~~~~l~~l~~L~~L~L~~n~~~ 155 (587)
.++...+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55533333333333 555555555543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=2.5e-10 Score=111.03 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=45.8
Q ss_pred CCCCCceeecccccCCCCCCcccCCccccCCCCcccccCCCCCEEeCCCCccCCC----CCccccCCCcccEEecCCCcc
Q 045935 140 KCENLKSVLLSFNALPGSLPEQLSELPLSGPLPSWFGKWNQLDSLLLSSNQFVGR----IPPEIGSCSMLKYISLSSNFV 215 (587)
Q Consensus 140 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~ 215 (587)
.+++|+.|++.+|.+.+..+..+.. ...+++|++|+++.|.+++. ++..+..+++|+.|++++|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~----------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLE----------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHH----------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHh----------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 3566666666666554211111100 01356777777777666532 122234567777777777777
Q ss_pred ccccCccccCCCCCcEEEcCCcc
Q 045935 216 SGSIPRELCNSESLVEINLDGNL 238 (587)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~~~ 238 (587)
++.....+...- -..+++++++
T Consensus 320 ~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 320 SDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp CHHHHHHHHHHC-CSEEECCSBC
T ss_pred CHHHHHHHHHHc-CCEEEecCCc
Confidence 655444444311 2446666654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=1.6e-09 Score=95.12 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=47.0
Q ss_pred hhccCCCCCcEEEccCcccccC----CCcccCCCCCCceecC--CCCccccc----CChhhcCCCCCccccCCCCcceec
Q 045935 499 RSLSNLSYLTSVDLHRNKFTGE----IPPELGNLIQLEYLDV--SKNMLCGQ----IPKKICRLSNLLYLSFEENRFAVL 568 (587)
Q Consensus 499 ~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~ 568 (587)
..+...+.|++|+|++|.+++. +...+...++|++|++ ++|.+... +.+.+...+.|++|++++|.+...
T Consensus 87 ~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 87 EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 3344556677777777776642 3455666677888888 77777642 345566678888888888887655
Q ss_pred C
Q 045935 569 G 569 (587)
Q Consensus 569 ~ 569 (587)
+
T Consensus 167 ~ 167 (185)
T 1io0_A 167 L 167 (185)
T ss_dssp H
T ss_pred H
Confidence 4
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=8.9e-09 Score=90.26 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=69.3
Q ss_pred ccCCCCCcEEEcCCC-cCccc----cccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCc
Q 045935 420 LGRLGGLVKLNLTGN-KLSGL----VPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFD 494 (587)
Q Consensus 420 l~~~~~L~~L~L~~~-~l~~~----~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~ 494 (587)
+...+.|++|++++| .+... +..++...++|++|+|++|.+.-.+ ...+...+.... +|++|+|++|.++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g---~~~l~~~L~~n~--~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV---AFALAEMLKVNN--TLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH---HHHHHHHHHHCS--SCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH---HHHHHHHHHhCC--CcCEEECcCCcCC
Confidence 444556666666666 55422 2233444566666666666554211 111222333333 6777777777776
Q ss_pred cC----CchhccCCCCCcEEEc--cCcccccC----CCcccCCCCCCceecCCCCccc
Q 045935 495 GG----LPRSLSNLSYLTSVDL--HRNKFTGE----IPPELGNLIQLEYLDVSKNMLC 542 (587)
Q Consensus 495 ~~----~~~~~~~~~~L~~L~L--~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 542 (587)
+. +...+...++|++|+| ++|.++.. +...+...++|++|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 42 3455666778888888 77888743 3345566688888888888775
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.40 E-value=6.6e-08 Score=82.16 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=35.9
Q ss_pred CCcEEEccCCccccCCCCCcCCCCCCcEEEecccc-cccCCChhhhcC----CCccEEecCCCC-CccCCccccccCCCC
Q 045935 47 SLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGINQ-FTGQLPPEIGEL----SLLEIFSSPSCS-ITGPLPEELSNYGSS 120 (587)
Q Consensus 47 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~l~~~~~L 120 (587)
+|++||+++|.++......+..|++|++|+|++|. +++.....++.+ ++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555443333334455555555555552 443222333332 234444444442 444333334444444
Q ss_pred cEEEeccc
Q 045935 121 GILNLGST 128 (587)
Q Consensus 121 ~~L~l~~~ 128 (587)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=8.7e-08 Score=81.42 Aligned_cols=91 Identities=18% Similarity=0.037 Sum_probs=62.4
Q ss_pred CCCcCCCCCCcEEEecccccccCCChhhhcCCCccEEecCCCC-CccCCccccccC----CCCcEEEecccc-CcccCCc
Q 045935 63 PPEIGNLKNLTHFFLGINQFTGQLPPEIGELSLLEIFSSPSCS-ITGPLPEELSNY----GSSGILNLGSTQ-LNGSIPA 136 (587)
Q Consensus 63 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~ 136 (587)
|.....-.+|++|++++|.+++.....+..|++|++|++++|. +++.....+..+ ++|++|++++|. +++....
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4333333578888888888776666667778888888888874 666554555553 367788887775 7666666
Q ss_pred cccCCCCCceeeccccc
Q 045935 137 ELGKCENLKSVLLSFNA 153 (587)
Q Consensus 137 ~l~~l~~L~~L~L~~n~ 153 (587)
.++++++|++|+++++.
T Consensus 134 ~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HGGGCTTCCEEEEESCT
T ss_pred HHhcCCCCCEEECCCCC
Confidence 66777777777777765
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=3e-07 Score=84.52 Aligned_cols=64 Identities=27% Similarity=0.395 Sum_probs=30.6
Q ss_pred cccCCCCEEeCCCCcCCC--CcCcccccCCCCCcEEEccCCccccCCCCCcCCCC--CCcEEEeccccccc
Q 045935 18 GELTQLPNLLLGNNLLSG--SLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLK--NLTHFFLGINQFTG 84 (587)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~--~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~ 84 (587)
.++++|++|+|++|.+.+ .++ ..+..+++|++|+|++|.+.+. ..+..++ +|++|++++|++.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 445555555555555553 222 3334555555555555555422 1222222 55555555555443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=5.5e-07 Score=82.72 Aligned_cols=76 Identities=29% Similarity=0.379 Sum_probs=56.6
Q ss_pred cccEEecccccCcc--CCchhccCCCCCcEEEccCcccccCCCcccCCCC--CCceecCCCCcccccCC-------hhhc
Q 045935 482 NIATLNLSNNFFDG--GLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLI--QLEYLDVSKNMLCGQIP-------KKIC 550 (587)
Q Consensus 482 ~L~~L~L~~~~l~~--~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~-------~~l~ 550 (587)
+|++|+|++|.+++ .++..+..+++|+.|+|++|++++. ..+..+. .|++|++++|++++..| ..+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 78888888888875 3446677889999999999998854 3333344 89999999999886554 3466
Q ss_pred CCCCCcccc
Q 045935 551 RLSNLLYLS 559 (587)
Q Consensus 551 ~l~~L~~L~ 559 (587)
.+|+|+.|+
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 788888775
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.60 E-value=1.5e-05 Score=69.00 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=35.8
Q ss_pred hccCCCCCcEEEccCcccccC----CCcccCCCCCCceecCCCC---cccc----cCChhhcCCCCCccccCCCCcce
Q 045935 500 SLSNLSYLTSVDLHRNKFTGE----IPPELGNLIQLEYLDVSKN---MLCG----QIPKKICRLSNLLYLSFEENRFA 566 (587)
Q Consensus 500 ~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~i~ 566 (587)
.+..-+.|++|+|++|.|+.. +.+++..-+.|++|+|++| .+.. .+.+++..-+.|+.|+++.|.+.
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 333445566666666665532 3344455556666666654 2222 23345556666777777666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.59 E-value=2.2e-05 Score=67.94 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=62.4
Q ss_pred CCCCCcEEEcCCC-cCccc----cccccccCCCCceeeccCCccccccccccccchhhhhhcccccccEEecccccCccC
Q 045935 422 RLGGLVKLNLTGN-KLSGL----VPTSLENLKGLTHLDLSYNKLDVQHNKLSGPLNELFTNSVAWNIATLNLSNNFFDGG 496 (587)
Q Consensus 422 ~~~~L~~L~L~~~-~l~~~----~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~ 496 (587)
.-+.|++|+|+++ .+... +.+++..-+.|++|+|++|.|. ......+...+.... +|++|+|++|.+++.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig---d~ga~alA~aL~~N~--tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS---DSEARGLIELIETSP--SLRVLNVESNFLTPE 113 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB---HHHHTTHHHHHHHCS--SCCEEECCSSBCCHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC---hHHHHHHHHHHhcCC--ccCeEecCCCcCCHH
Confidence 3445555555553 44321 2233444455666666665554 222223334444444 667777777766542
Q ss_pred ----CchhccCCCCCcEEEccCc---cccc----CCCcccCCCCCCceecCCCCcc
Q 045935 497 ----LPRSLSNLSYLTSVDLHRN---KFTG----EIPPELGNLIQLEYLDVSKNML 541 (587)
Q Consensus 497 ----~~~~~~~~~~L~~L~L~~n---~~~~----~~~~~l~~l~~L~~L~l~~n~l 541 (587)
+...+..-+.|++|+|++| .+.. .+.+.+..-+.|++|+++.|.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3344555567888888755 3332 2345556667888888877754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0016 Score=52.56 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=37.0
Q ss_pred cEEecccccCc-cCCchhccCCCCCcEEEccCcccccCCCcccCCCCCCceecCCCCccc
Q 045935 484 ATLNLSNNFFD-GGLPRSLSNLSYLTSVDLHRNKFTGEIPPELGNLIQLEYLDVSKNMLC 542 (587)
Q Consensus 484 ~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 542 (587)
..++-+++.++ ..+|..+. ++|++|+|++|+++...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46667777665 23443332 36777777777777555566677777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.24 E-value=0.0065 Score=48.92 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=24.3
Q ss_pred cccEEecccccCccCCchhccCCCCCcEEEccCcccc
Q 045935 482 NIATLNLSNNFFDGGLPRSLSNLSYLTSVDLHRNKFT 518 (587)
Q Consensus 482 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~n~~~ 518 (587)
+|+.|+|++|.++...+..|..+++|+.|+|++|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6667777777766555555666667777777766653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.22 E-value=0.6 Score=35.10 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=29.4
Q ss_pred cCCCCcCcccccCCCCCcEEEccCCccccCCCCCcCCCCCCcEEEeccc
Q 045935 32 LLSGSLPVSLFTNLQSLSHLDVSNNSLYGSFPPEIGNLKNLTHFFLGIN 80 (587)
Q Consensus 32 ~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 80 (587)
.+. .|..++|.+|++|+.+.|..+ ++.....+|.+|.+|+.+.+.+.
T Consensus 7 ~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344 556666777777777777654 44355556677777777766553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.35 E-value=1.8 Score=32.50 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=42.0
Q ss_pred CCccccccCccccccCCCCEEeCCCCcCCCCcCcccccCCCCCcEEEccCCc
Q 045935 6 GNVLNGTVPRQIGELTQLPNLLLGNNLLSGSLPVSLFTNLQSLSHLDVSNNS 57 (587)
Q Consensus 6 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~l~~L~~L~l~~~~ 57 (587)
+..++.+-..+|..|+.|+.+.|-.+ ++ .|...+|.+|.+|+.+.+.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCCC
Confidence 44677788899999999999999765 44 5777999999999999998753
Done!