BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045936
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Query: 17 SENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHI-- 74
++ VS N LVVDD P+ RR+ + L S+G++ + A +G +A+++ +K HI
Sbjct: 120 TDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL---SKNHIDI 176
Query: 75 VFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTM 132
V D+ MP MDG T+ +R + + ++GVT+ E++ +++G+D C +KP+T+
Sbjct: 177 VLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 234
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 5/117 (4%)
Query: 21 VSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHI--VFID 78
VS N LVVDD P+ RR+ + L S+G++ + A +G +A+++ +K HI V D
Sbjct: 3 VSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL---SKNHIDIVLSD 59
Query: 79 MEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
+ MP MDG T+ +R + + ++GVT+ E++ +++G+D C +KP+T+ I
Sbjct: 60 VNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVI 116
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDD+P IR + L+ G++++ AENG+EA+ F +G + +V +D+EMP + G+E
Sbjct: 5 LVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG-NYDLVILDIEMPGISGLEV 63
Query: 90 TKAMRAMKVESKIVGVTS 107
+R K ++KI+ +T+
Sbjct: 64 AGEIRKKKKDAKIILLTA 81
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD+ +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+R + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD+ +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWMMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+R + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD+ +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 5 LVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 63
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 64 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 112
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D +MP MDG+E
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWDMPNMDGLE 70
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+R + QAG KP T A +
Sbjct: 71 LLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATL 119
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD+ +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 5 LVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 63
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFM---QAGLDLCYTKPLTMAKI 135
K +RA S + V +E ++E + QAG KP T A +
Sbjct: 64 LLKTIRADGAMSALP-VLMTTAEAKKENIIAAAQAGASGYVVKPFTAATL 112
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDD+P IR + L+ G++++ AENG+EA+ F +G + +V +D+E P + G+E
Sbjct: 5 LVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG-NYDLVILDIEXPGISGLEV 63
Query: 90 TKAMRAMKVESKIVGVTS 107
+R K ++KI+ +T+
Sbjct: 64 AGEIRKKKKDAKIILLTA 81
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATL 116
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD+ +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWRMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G F + D MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-FGFIICDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D +MP MDG+E
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWDMPNMDGLE 70
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT++ + QAG KP T A +
Sbjct: 71 LLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFTAATL 119
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 21/131 (16%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAK------------FHIVF 76
LVVDD+ + R++ + LK +G +VE ++GKEA+ L G F +F
Sbjct: 65 LVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIF 124
Query: 77 IDMEMPVMDGIEATKAMRAMK----VESKIVGVTSRN--SETEREVFMQAGLDLCYTKPL 130
+D +MP MDG EAT+ +R ++ V + I+ V+ + SE RE +QAG+D K L
Sbjct: 125 MDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARET-IQAGMDAFLDKSL 183
Query: 131 T-MAKIVPLLE 140
+A ++ +E
Sbjct: 184 NQLANVIREIE 194
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D +MP MDG+E
Sbjct: 8 LVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWKMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D +MP MDG+E
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWDMPNMDGLE 70
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT++ + QAG KP T A +
Sbjct: 71 LLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFTAATL 119
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VTS + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G F + D MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-FGFIISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G F + D MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-FGFIISDWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 68 LLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 4 GAEGASSSKKARISENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAV 63
G G +++ +AR+ LVVDD+ I + S+ LK GF+V A NG +A+
Sbjct: 14 GTPGENTTPEARV-------------LVVDDEANIVELLSVSLKFQGFEVYTATNGAQAL 60
Query: 64 DLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLD 123
D R + V +D+ P DG + +RA +++ + +T+R+S ++ + G D
Sbjct: 61 DRARE-TRPDAVILDVXXPGXDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGD 119
Query: 124 LCYTKPLTMAKIVPLL 139
TKP ++ ++V L
Sbjct: 120 DYVTKPFSLEEVVARL 135
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATL 115
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D +MP MDG+E
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWDMPNMDGLE 70
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 71 LLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATL 119
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATL 115
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD+ +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWMMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWRMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 9 LVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFM---QAGLDLCYTKPLTMAKI 135
K +RA S + V +E ++E + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALP-VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATL 115
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFM---QAGLDLCYTKPLTMAKI 135
K +RA S + V +E ++E + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALP-VLMVIAEAKKENIIAAAQAGASGWVVKPFTAATL 115
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATL 116
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDD+ I I L+ G++V A +G EAV++ + ++ +D+ +P DG+E
Sbjct: 6 LVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-LQPDLILLDIMLPNKDGVEV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+ +R K + I+ +T+++SE ++ + ++ G D TKP + +++
Sbjct: 65 CREVRK-KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELL 110
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDD+ I I L+ G++V A +G EAV++ + ++ +D+ +P DG+E
Sbjct: 6 LVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-LQPDLILLDIMLPNKDGVEV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+ +R K + I+ +T+++SE ++ + ++ G D TKP + +++
Sbjct: 65 CREVRK-KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELL 110
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 46 LKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105
L+ GF+V A +G EA+ T + + +D+ MPV+DG+ A+RAM + + +
Sbjct: 27 LRLSGFEVATAVDGAEALR-SATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVL 85
Query: 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144
++R+S +R ++AG D KP +A++V ++ L +
Sbjct: 86 SARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLR 124
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFM---QAGLDLCYTKPLTMAKI 135
K +RA S + V +E ++E + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALP-VLMVIAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 10 LVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 68
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 69 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 117
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDD+ I + L+ G+ V A +G+EA+ T K ++ +D+ +P +DGIE
Sbjct: 7 LVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET-EKPDLIVLDVMLPKLDGIEV 65
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131
K +R K+ I+ +T+++ E ++ + ++ G D TKP +
Sbjct: 66 CKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFS 107
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V MP MDG+E
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISXWNMPNMDGLE 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 68 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISXWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVV D +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 10 LVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 68
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 69 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 117
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISAWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVD +RRI +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 7 LVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 65
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 66 LLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 114
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVD----LFRTGAKFHIVFIDMEMPVM 84
LVV+D+ + + + +L G + +E+A +G+EA D L G ++++F+D++MP +
Sbjct: 5 LVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKV 64
Query: 85 DGIEATKAM-RAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142
DG+ +TK + R + S IV +T+ ++ + +++G++ +KP+ K+ +L E
Sbjct: 65 DGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEF 123
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVD----LFRTGAKFHIVFIDMEMPVM 84
LVV+D+ + + + +L G + +E+A +G+EA D L G ++++F+D++MP +
Sbjct: 6 LVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKV 65
Query: 85 DGIEATKAM-RAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142
DG+ +TK + R + S IV +T+ ++ + +++G++ +KP+ K+ +L E
Sbjct: 66 DGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEF 124
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 24 NRPYFALVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMP 82
N+ L+VDD +RRI +L+ +GF + A++G A+ + + G F V D MP
Sbjct: 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG-DFDFVVTDWNMP 68
Query: 83 VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFM---QAGLDLCYTKPLTMAKIVPLL 139
M GI+ K +RA + E K + V +E +RE + QAG++ KP T A + L
Sbjct: 69 GMQGIDLLKNIRADE-ELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKL 127
Query: 140 EEL 142
+++
Sbjct: 128 DKI 130
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLF-RTGAKFHIVFIDMEMPVMDGIE 88
L+V+D+ + + +L+ GF+ V +G A+ F R GA IV +D+ +P M G +
Sbjct: 8 LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGAD--IVLLDLMLPGMSGTD 65
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
K +RA + ++ VT+R+SE ++ V ++ G D TKP + +++
Sbjct: 66 VCKQLRA-RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELI 112
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 26 PYFALVVDDDPMIRRIHSMILKSV-GFKVEV-AENGKEAVDLFRTGAKFHIVFIDMEMPV 83
PY ++VDD M+R + +K++ FKV A NG+EA+D ++ +D+EMPV
Sbjct: 13 PYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPV 72
Query: 84 MDGIEATKAMRAMKVESKIVGVTS 107
MDG+E + + +K +KI ++S
Sbjct: 73 MDGMEFLRHAK-LKTRAKICMLSS 95
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISXWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFM---QAGLDLCYTKPLTMAKI 135
K +RA S + V +E ++E + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALP-VLMVIAEAKKENIIAAAQAGASGWVVKPFTAATL 115
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVV+D+ ++R + ++ G +V+ AE+ KEA D + I +D+ +P DG+
Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGLSL 62
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
+ R+ V I+ +T+R S ++ + AG D TKP + ++
Sbjct: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEV 108
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD+ I I + G++V A NG+EA++ F + I+ +D+ +P +DG+E
Sbjct: 5 LIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-AEQPDIIILDLMLPEIDGLEV 63
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131
K +R I+ +++++SE ++ + ++ G D TKP +
Sbjct: 64 AKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFS 104
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ + G + V MP MDG+E
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISXWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFM---QAGLDLCYTKPLTMAKI 135
K +RA S + V +E ++E + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALP-VLMVIAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVD RRI +LK +GF VE AE+G +A++ + G + V D P DG+E
Sbjct: 8 LVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNXPNXDGLE 66
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA S ++ VT+ + QAG KP T A +
Sbjct: 67 LLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKPFTAATL 115
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 26 PYFALVVDDDPMIRRIHSMILKSV-GFKVEV-AENGKEAVDLFRTGAKFHIVFIDMEMPV 83
PY ++VDD M+R + +K++ FKV A NG+EA+D ++ +++EMPV
Sbjct: 13 PYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLNIEMPV 72
Query: 84 MDGIEATKAMRAMKVESKIVGVTS 107
MDG+E + + +K +KI + S
Sbjct: 73 MDGMEFLRHAK-LKTRAKICMLAS 95
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 31 VVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEAT 90
+VDDD +R IL GF + A++G + +DL + G +V +D+ P DG +
Sbjct: 12 IVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFS-GVVLLDIXXPGXDGWDTI 70
Query: 91 KAMRAMKVES--KIVGVTSRNSETEREVFMQAGLDLCYTKPL 130
+A+ +E IV +T++N+ + + +Q + TKP
Sbjct: 71 RAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPF 112
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI L +G++ V AE+G EA + A ++ D MP M+G++
Sbjct: 9 LVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLD 68
Query: 89 ATKAMRAMK--VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131
K +R+ E I+ +T+ + E ++AG++ KP T
Sbjct: 69 LVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 113
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI L +G++ V AE+G EA + A ++ D MP M+G++
Sbjct: 9 LVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLD 68
Query: 89 ATKAMRAMK--VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131
K +R+ E I+ +T+ + E ++AG++ KP T
Sbjct: 69 LVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFT 113
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD 85
P L+ +D+ + R + + L+ + V NG +A+ ++ +F ++ +D++MPVMD
Sbjct: 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ-NRQFDVIIMDIQMPVMD 68
Query: 86 GIEATKAMRAMK-----VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131
G+EA +R + + I+ +T+ + +R A LD +KPL
Sbjct: 69 GLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLN 116
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 71/141 (50%), Gaps = 31/141 (21%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+V+D+ + + ++K +G +++A NG EA+ + + + +V +D+ MPV+DG++A
Sbjct: 12 LLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSSS-YDLVLMDVCMPVLDGLKA 70
Query: 90 TKAMRAMK--------VESKIVGVTSRN---------------------SETEREVFMQA 120
T+ +R+ + +E+ + TS N +E+ E +
Sbjct: 71 TRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECYAN- 129
Query: 121 GLDLCYTKPLTMAKIVPLLEE 141
G+D +KP+T+ K+ L++
Sbjct: 130 GMDSFISKPVTLQKLRECLQQ 150
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD+ I I + G++V A NG+EA++ F + I+ + + +P +DG+E
Sbjct: 5 LIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-AEQPDIIILXLMLPEIDGLEV 63
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131
K +R I+ +++++SE ++ + ++ G D TKP +
Sbjct: 64 AKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFS 104
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
Length = 150
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVMDG 86
LV +D M+R +L ++ VE A+NG+EA+ L + I +D+EMPV G
Sbjct: 24 LVAEDQSMLRDAMCQLL-TLQPDVESVLQAKNGQEAIQLLEKES-VDIAILDVEMPVKTG 81
Query: 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLL 139
+E + +R+ K+E+K+V VT+ E ++AG+D K ++A ++ L
Sbjct: 82 LEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTL 134
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD ++R+I S LK G++V AENG+ A++ ++ +D+ MPVMDG
Sbjct: 6 LLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP-DLIVLDIMMPVMDGFTV 64
Query: 90 TKAMRAMKVESKI--VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
K ++ + +I + +T++ E + + + G KP + ++ +
Sbjct: 65 LKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFI 113
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
L+VDD +R + I+ G++V A NG+EAV+ ++ K IV +D+ MP M+GI+
Sbjct: 6 LIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-LKPDIVTMDITMPEMNGID 64
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144
A K + + +KI+ ++ + ++AG KP +++V L ++ K
Sbjct: 65 AIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVSK 120
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 26 PYFALVVDDDPMIR-RIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM 84
P+ ++V+D+P+ + R+ S + G+ V V +G ++ + + ++ +D+ +P
Sbjct: 2 PHHIVIVEDEPVTQARLQSYFTQE-GYTVSVTASGAGLREIXQNQS-VDLILLDINLPDE 59
Query: 85 DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+G+ T+A+R + I+ VT R+ +R V ++ G D TKPL + ++V
Sbjct: 60 NGLXLTRALRE-RSTVGIILVTGRSDRIDRIVGLEXGADDYVTKPLELRELV 110
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD IR + + + G++ A NG +A+D+ T + +V +DM++P MDGIE
Sbjct: 7 LIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 65
Query: 90 TKAMRAMKVESKIVGVTS 107
K M+ + +++ +T+
Sbjct: 66 LKRMKVIDENIRVIIMTA 83
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD IR + + + G++ A NG +A+D+ T + +V +DM++P MDGIE
Sbjct: 5 LIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 63
Query: 90 TKAMRAMKVESKIVGVTS 107
K M+ + +++ +T+
Sbjct: 64 LKRMKVIDENIRVIIMTA 81
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD IR + + + G++ A NG +A+D+ T + +V +DM++P MDGIE
Sbjct: 7 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 65
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K M+ + +++ +T+ + + G + KP + +I
Sbjct: 66 LKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEI 111
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDDD + + +++L+ GF V +G +A+ R + +V +D+ +P M+GI+
Sbjct: 9 LVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE-LRPDLVLLDLMLPGMNGIDV 67
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKP 129
+ +RA IV +T++ + + +++G D KP
Sbjct: 68 CRVLRA-DSGVPIVMLTAKTDTVDVVLGLESGADDYIMKP 106
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD IR + + + G++ A NG +A+D+ T + +V +DM++P MDGIE
Sbjct: 7 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 65
Query: 90 TKAMRAMKVESKIVGVTS 107
K M+ + +++ +T+
Sbjct: 66 AKRMKVIDENIRVIIMTA 83
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI L +G++ V AE+G EA + A ++ MP M+G++
Sbjct: 9 LVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITAWNMPEMNGLD 68
Query: 89 ATKAMRAMK--VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131
K +R+ E I+ +T+ + E ++AG++ KP T
Sbjct: 69 LVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFT 113
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVV+D+ IR + +L+ GF+ AE+ AV+ ++ + +P GI+
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLAWMLPGGSGIQF 64
Query: 90 TKAMR--AMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
K +R +M + +V +T+R E +R ++ G D C TKP + ++V
Sbjct: 65 IKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELV 113
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD IR + + + G++ A NG +A+D+ T + +V +DM++P MDGIE
Sbjct: 7 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 65
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K M+ + +++ +T+ + + G + KP + +I
Sbjct: 66 LKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEI 111
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD IR + + + G++ A NG +A+D+ T + +V +DM++P MDGIE
Sbjct: 9 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 67
Query: 90 TKAMRAMKVESKIVGVTS 107
K M+ + +++ +T+
Sbjct: 68 LKRMKVIDENIRVIIMTA 85
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
L+VDD +R + I+ G++V A NG+EAV+ ++ K IV +D+ MP M+GI+
Sbjct: 5 LIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-LKPDIVTMDITMPEMNGID 63
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142
A K + + +KI+ ++ + ++AG KP +++V L ++
Sbjct: 64 AIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 117
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD IR + + + G++ A NG +A+D+ T + +V +DM++P MDGIE
Sbjct: 7 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLDMKIPGMDGIEI 65
Query: 90 TKAMRAMKVESKIVGVTS 107
K M+ + +++ +T+
Sbjct: 66 LKRMKVIDENIRVIIMTA 83
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LV++DD + R + L G KVE AE GKEA L + F++V + + +P ++G+E
Sbjct: 4 LVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL-SEKHFNVVLLXLLLPDVNGLEI 62
Query: 90 TKAMRAMKVESKIVGVTSRNS-ETEREVFMQAGLDLCYTKPLTMAKI 135
K ++ E++++ +T + +T E D TKP + +I
Sbjct: 63 LKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFL-TKPCMLEEI 108
>pdb|3I42|A Chain A, Structure Of Response Regulator Receiver Domain
(Chey-Like) From Methylobacillus Flagellatus
Length = 127
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
AL+V+D +L+ +GF+ + +G +A+ T + VFID+ +P G+
Sbjct: 6 ALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG-YDAVFIDLNLPDTSGLA 64
Query: 89 ATKAMRAMKVE--SKIVGVT--SRNSETER--EVFMQAGLDLCYTKPLTMAKIVPLLEEL 142
K +RA+ +E SK V V+ ++N + E+F D KP+ +A + P+L+ +
Sbjct: 65 LVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELF-----DFYLEKPIDIASLEPILQSI 119
Query: 143 Q 143
+
Sbjct: 120 E 120
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD ++R+I S LK G++V AENG+ A++ IV M MPVMDG
Sbjct: 6 LLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM-MPVMDGFTV 64
Query: 90 TKAMRAMKVESKI--VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
K ++ + +I + +T++ E + + + G KP + ++ +
Sbjct: 65 LKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFI 113
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 26 PYFALVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFH---IVFIDMEM 81
P L+ +D+ +IR + +L+ G++ V A +G+EAV+L A+ H +V +D++M
Sbjct: 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVEL----AELHKPDLVIMDVKM 68
Query: 82 PVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140
P DGI+A + + ++ + IV +T+ + E AG KP +++ ++P +E
Sbjct: 69 PRRDGIDAASEIASKRI-APIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIE 126
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVV + + +LK +GF VE AE+G +A++ + G + V D MP MDG+E
Sbjct: 8 LVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLE 66
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFM---QAGLDLCYTKPLTMAKI 135
K +RA S + V +E ++E + QAG KP T A +
Sbjct: 67 LLKTIRADGAMSALP-VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 115
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVV+D+ IR + +L+ GF+ AE+ AV+ ++ + +P GI+
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLAWMLPGGSGIQF 64
Query: 90 TKAMR--AMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
K ++ +M + +V +T+R E +R ++ G D C TKP + ++V
Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELV 113
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L++DDD ++R + L+ FKV A NG + + +F + + +V D+ P +DG+E
Sbjct: 9 LIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-EQPDLVICDLRXPQIDGLEL 67
Query: 90 TKAMRAMKVESKIV 103
+ +R E+ I+
Sbjct: 68 IRRIRQTASETPII 81
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L++DDD ++R + L+ FKV A NG + + +F + + +V D+ P +DG+E
Sbjct: 9 LIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-EQPDLVICDLRXPQIDGLEL 67
Query: 90 TKAMRAMKVESKIV 103
+ +R E+ I+
Sbjct: 68 IRRIRQTASETPII 81
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVV+D+ + + + LK F V+V +G+E + F +V +D+ +PV DG E
Sbjct: 5 VLVVEDERDLADLITEALKKEMFTVDVCYDGEEGM-YMALNEPFDVVILDIMLPVHDGWE 63
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
K+MR V + ++ +T+ + R + G D KP + +++
Sbjct: 64 ILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELI 111
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFH-----IVFIDMEMPVM 84
LVVDDD + +LK ++VE+A NG F G K I+ +D+ MP +
Sbjct: 10 LVVDDDQAMAAAIERVLKRDHWQVEIAHNG------FDAGIKLSTFEPAIMTLDLSMPKL 63
Query: 85 DGIEATKAMRAMKV--ESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142
DG++ +++R KV + KI+ V+ + ++ + G D KP ++ + +L
Sbjct: 64 DGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTE-GADDYLEKPFDNDALLDRIHDL 122
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+V+D+ IRR L+ G +V AE + + L K ++ +D+ +P DGIE
Sbjct: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGDGIEF 63
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
+ +R IV +++R+ E+++ + AG D +KP + ++
Sbjct: 64 IRDLRQWSAVPVIV-LSARSEESDKIAALDAGADDYLSKPFGIGEL 108
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD IR + + + G++ A NG +A+D+ T + +V + M++P MDGIE
Sbjct: 7 LIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV-TKERPDLVLLXMKIPGMDGIEI 65
Query: 90 TKAMRAMKVESKIVGVTS 107
K M+ + +++ +T+
Sbjct: 66 LKRMKVIDENIRVIIMTA 83
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVV+D+ IR + +L+ GF+ AE+ AV+ ++ +D +P GI+
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGSGIQF 64
Query: 90 TKAMR--AMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
K ++ +M + +V +T+R E +R ++ G D TKP + ++V
Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELV 113
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVV+D+ IR + +L+ GF+ AE+ AV+ ++ +D +P GI+
Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGSGIQF 64
Query: 90 TKAMR--AMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
K ++ +M + +V +T+R E +R ++ G D TKP + ++V
Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELV 113
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVV+D+ + + + LK F V+V +G+E F +V +D+ +PV DG E
Sbjct: 6 LVVEDERDLADLITEALKKEXFTVDVCYDGEEGX-YXALNEPFDVVILDIXLPVHDGWEI 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
K+ R V + ++ +T+ + R + G D KP + +++
Sbjct: 65 LKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELI 111
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 19 NPVSKNRPYF----ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHI 74
NP ++R LV DD R + +L+ G KV + NG E V +
Sbjct: 3 NPFLRHRARVRSMRMLVADDHEANRMVLQRLLEKAGHKV-LCVNGAEQVLDAMAEEDYDA 61
Query: 75 VFIDMEMPVMDGIEATKAMRAMKVE----SKIVGVTSRNSETEREVFMQAGLDLCYTKPL 130
V +D+ MP M+G++ K +R M+ + +V +++ + QAG KP+
Sbjct: 62 VIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 121
Query: 131 TMAKIVPLLEEL 142
AK++ L +L
Sbjct: 122 VAAKLLDTLADL 133
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 10 SSKKARISENPVSKNR--------PYFALVVDDDPMIRRIHSMILKSVGFKV-EVAENGK 60
S +K I+ + SK R P+ L+VDD + + I S GF + + A +G+
Sbjct: 12 SIQKTTIAADSSSKPRGINYDTGIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGE 71
Query: 61 EAVDLFRTG-AKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQ 119
EAV ++ IV + + MP MDGI + ++++ +++ E + +
Sbjct: 72 EAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLI 131
Query: 120 AGLDLCYTKPLTMAKIV 136
G KPL AK++
Sbjct: 132 KGAKTFIVKPLDRAKVL 148
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
L+VDD R + L+ +GFK + A +G++ + + H+V D MP MDG+
Sbjct: 10 LIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN-PHHLVISDFNMPKMDGLG 68
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFMQA---GLDLCYTKPLTMAKIVPLLE 140
+A+RA K + ++ +R + +A G + KP T+ K+ +E
Sbjct: 69 LLQAVRANPATKKAAFII-LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIE 122
>pdb|3F6C|A Chain A, Crystal Structure Of N-Terminal Domain Of Positive
Transcription Regulator Evga From Escherichia Coli
pdb|3F6C|B Chain B, Crystal Structure Of N-Terminal Domain Of Positive
Transcription Regulator Evga From Escherichia Coli
Length = 134
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 29 ALVVDDDPM-IRRIHSMILKS-VGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG 86
A+++DD P+ I I ++++K+ + E+ E G AV T K IV ID+++P ++G
Sbjct: 4 AIIIDDHPLAIAAIRNLLIKNDIEILAELTEGG-SAVQRVET-LKPDIVIIDVDIPGVNG 61
Query: 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140
I+ + +R + I+ V+++N + AG + +K M I+ +E
Sbjct: 62 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIE 115
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
VVDDD +R +L+S GF+VE + ++ R + + +DM MP M GIE
Sbjct: 8 FVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLE-HRRPEQHGCLVLDMRMPGMSGIEL 66
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEE-LQKN 145
+ + A+ IV +T+ M+AG KP ++ +E+ LQ N
Sbjct: 67 QEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM 84
+P+ L+VDDD + ++L+ G++V A +G+EA+ ++ D+ +P +
Sbjct: 3 KPHTLLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLPDALI-CDVLLPGI 61
Query: 85 DGIEATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
DG K +R + I+ +T++ + + +AG + KP ++V
Sbjct: 62 DGYTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELV 115
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LV++DD + R + L G KVE AE GKEA L + F++V +D+ +P ++G+E
Sbjct: 4 LVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL-SEKHFNVVLLDLLLPDVNGLEI 62
Query: 90 TKAMRAMKVESKIVGVTSRNS-ETEREVFMQAGLDLCYTKPLTMAKI 135
K ++ E++++ +T + +T E D TKP + +I
Sbjct: 63 LKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFL-TKPCMLEEI 108
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 9/70 (12%)
Query: 30 LVVDDDP----MIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG-AKFHIVFIDMEMPVM 84
LVV+D+P +IRR+ + K + ++E +NG +A L++ AK+ ++ +D+ +P+
Sbjct: 9 LVVEDNPDDIALIRRV--LDRKDIHCQLEFVDNGAKA--LYQVQQAKYDLIILDIGLPIA 64
Query: 85 DGIEATKAMR 94
+G E A+R
Sbjct: 65 NGFEVXSAVR 74
>pdb|3CZ5|A Chain A, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|B Chain B, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|C Chain C, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|D Chain D, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
Length = 153
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 30 LVVDDDPMIRRIHS-MILKSVGFKV--EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG 86
++VDD P++R + +I + G+ V E A+ G EA L+R IV +D+ +P G
Sbjct: 9 MLVDDHPIVREGYRRLIERRPGYAVVAEAADAG-EAYRLYRETTP-DIVVMDLTLPGPGG 66
Query: 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142
IEAT+ +R ++I+ T +AG TK A++V +E +
Sbjct: 67 IEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAI 122
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 24 NRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV 83
NR L+V+D P IL+ G++ E NG+EAV F + + ++ D+ MP
Sbjct: 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVR-FLSLTRPDLIISDVLMPE 63
Query: 84 MDGIEATKAMRA 95
MDG + ++
Sbjct: 64 MDGYALCRWLKG 75
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
Length = 132
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDDD I IL+ G++VE+A E + F++ +++P +G E
Sbjct: 7 LIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN-EFFNLALFXIKLPDXEGTEL 65
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVF-MQAGLDLCYTKPLT----MAKIVPLLEELQK 144
+ ++ K + VT S E VF + AG D KP+ + KI L+E +K
Sbjct: 66 LEKAHKLRPGXKKIXVTGYAS-LENSVFSLNAGADAYIXKPVNPRDLLEKIKEKLDEQEK 124
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 31 VVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEAT 90
VVDDD I + S L+ +G +V+ G+ D FH+V +D+ +P G E
Sbjct: 7 VVDDDKNILKKVSEKLQQLG-RVKTFLTGE---DFLNDEEAFHVVVLDVXLPDYSGYEIC 62
Query: 91 KAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT----MAKIVPLLEELQKN 145
+ ++ + E+ ++ +T + + +AG D TKP +A++ LE +K
Sbjct: 63 RXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKKG 121
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 31 VVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEAT 90
VVDDD I + S L+ +G +V+ G+ D FH+V +D+ +P G E
Sbjct: 7 VVDDDKNILKKVSEKLQQLG-RVKTFLTGE---DFLNDEEAFHVVVLDVXLPDYSGYEIC 62
Query: 91 KAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT----MAKIVPLLE 140
+ ++ + E+ ++ +T + + +AG D TKP +A++ LE
Sbjct: 63 RXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
VVDDD IR + L G ENG E + + ++ D+ MP MDG+
Sbjct: 7 WVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-DVLLSDIRMPGMDGLAL 65
Query: 90 TKAMRAMKVESKIVGVTSRNS-ETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140
K ++ ++ +T+ + + + Q D KP + + V L+E
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL-PKPFDIDEAVALVE 116
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
VVDDD IR + L G ENG E + + ++ D+ MP MDG+
Sbjct: 7 WVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-DVLLSDIRMPGMDGLAL 65
Query: 90 TKAMRAMKVESKIVGVTSRNS-ETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140
K ++ ++ +T+ + + + Q D KP + + V L+E
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL-PKPFDIDEAVALVE 116
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
VVDDD IR + L G ENG E + + ++ D+ MP MDG+
Sbjct: 7 WVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-DVLLSDIRMPGMDGLAL 65
Query: 90 TKAMRAMKVESKIVGVTSRNS-ETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140
K ++ ++ +T+ + + + Q D KP + + V L+E
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL-PKPFDIDEAVALVE 116
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 24 NRPYFALVVDDDPMIRRIHSMILKS------VGFKVEVAENGKEAVDLFRTGAKFHIVFI 77
+R LVVDD +R + I+ S VGF + E ++A++L K ++ +
Sbjct: 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL-----KPDVITM 77
Query: 78 DMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETER---EVFMQAGLDLCYTKP----- 129
D+EMP ++GIEA K + K ++++ V+S E E +D TKP
Sbjct: 78 DIEMPNLNGIEALKLIMK-KAPTRVIMVSSLTEEGAAITIEALRNGAVDFI-TKPHGSIS 135
Query: 130 LTMAKIVP-LLEELQK 144
LT ++ P LLE++++
Sbjct: 136 LTFRQVAPELLEKIRQ 151
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVV+ + IR + +L+ GF+ AE+ AV+ ++ ++ +P GI+
Sbjct: 6 LVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLEWMLPGGSGIQF 64
Query: 90 TKAMR--AMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
K ++ +M + +V +T+R E +R ++ G D TKP + ++V
Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELV 113
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 30 LVVDDDPMIRRIHSMILKSV--GFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI 87
LV++D+P R + LK V G +E A +GKEAV + + I D++M MDG+
Sbjct: 7 LVLEDEPFQRLVAVTALKKVVPGSILEAA-DGKEAVAILESCGHVDIAICDLQMSGMDGL 65
Query: 88 EATK-AMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT----KPLTMAKIVPLL 139
+ A + KV S I+ + + M L L + KP ++ +I LL
Sbjct: 66 AFLRHASLSGKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALL 122
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+V+D+ + ++ +L++ G++ G A+ + R K ++ +D+++P + G+E
Sbjct: 5 LIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN-KPDLILMDIQLPEISGLEV 63
Query: 90 TKAMRAMKVESKI--VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144
TK ++ + I V VT+ + + E + G + +KP++ +V LE +++
Sbjct: 64 TKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPIS---VVHFLETIKR 117
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+V+D+ + R I ++ G+ V A +G E + + ++V +D+ +P +G+
Sbjct: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-SEYDINLVIMDINLPGKNGLLL 65
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131
+ +R + ++ +T R++E ++ + ++ G D TKP
Sbjct: 66 ARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFN 106
>pdb|3GRC|A Chain A, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|B Chain B, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|C Chain C, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|D Chain D, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
Length = 140
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM 84
RP L+ +DDP I R+ ++ L+ GF + + +A++ + +D+ +P
Sbjct: 6 RPRI-LICEDDPDIARLLNLXLEKGGFDSDXVHSAAQALEQV-ARRPYAAXTVDLNLPDQ 63
Query: 85 DGIEATKAMR--AMKVESKIVGVTSRNSETEREVFMQ 119
DG+ +A+R + + IV V++ E E E Q
Sbjct: 64 DGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQ 100
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+V+D+ + R I ++ G+ V A +G E + + ++V D+ +P +G+
Sbjct: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQIL-SEYDINLVIXDINLPGKNGLLL 65
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131
+ +R + + +T R++E ++ + ++ G D TKP
Sbjct: 66 ARELRE-QANVALXFLTGRDNEVDKILGLEIGADDYITKPFN 106
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM-PVMDGIE 88
L+V+D + + IL G+ VE+A G+ AV+ G ++ +D+E+ MDG++
Sbjct: 9 LIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQ 68
Query: 89 ATKAMR 94
A++
Sbjct: 69 TALAIQ 74
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
VVDDD IR + L G ENG E + + ++ + MP MDG+
Sbjct: 7 WVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-DVLLSXIRMPGMDGLAL 65
Query: 90 TKAMRAMKVESKIVGVTSRNS-ETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140
K ++ ++ +T+ + + + Q D KP + + V L+E
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL-PKPFDIDEAVALVE 116
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Query: 24 NRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV 83
N+ LVVDD R L+ +V A + +EA+ +V +D P
Sbjct: 122 NQQIEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYXPE 181
Query: 84 MDGIEATKAMRAM--KVESKIVGVTSRNSETEREVFMQAGLDLCYTKPL 130
+DGI + +R K + I+G++ + +++ G + +P
Sbjct: 182 IDGISLVRXLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPF 230
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 53 VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103
V+ A NG+EAV+ ++ K IV +D+ MP M+GI+A K + + +KI+
Sbjct: 8 VDDATNGREAVEKYKE-LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 57
>pdb|3KCN|A Chain A, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
pdb|3KCN|B Chain B, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
Length = 151
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDDD + L S F+V E+G EA+ + F ++ +D P +G E
Sbjct: 8 LLVDDDYSLLNTLKRNL-SFDFEVTTCESGPEALACIKKSDPFSVIXVDXRXPGXEGTEV 66
Query: 90 TKAMRAMKVESKIVGVTSRNSET 112
+ R + S + +T T
Sbjct: 67 IQKARLISPNSVYLXLTGNQDLT 89
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 53 VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103
V+ A NG+EAV+ ++ K IV +D+ MP M+GI+A K + + +KI+
Sbjct: 8 VDDATNGREAVEKYKE-LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 57
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LV+D++ + R + +L +G +V + +E + + K +VF+D+ MP G+E
Sbjct: 10 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHK--VVFMDVCMP---GVE 64
Query: 89 ATKAMRAMKVESK----------IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPL 138
+ A+++ K +V ++ ++ +E M GLD KP+++ I +
Sbjct: 65 NYQI--ALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDV 122
Query: 139 LEEL 142
L +L
Sbjct: 123 LSDL 126
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 30 LVVDDDPMIRR--IHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI 87
+V DD P+ R + ++ L V A++G A++L + + +D MP MDG
Sbjct: 19 VVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLP-DVALLDYRMPGMDGA 77
Query: 88 EATKAMRAMKVESKIVGVTSRN 109
+ A+R+ ++ ++++ +++ +
Sbjct: 78 QVAAAVRSYELPTRVLLISAHD 99
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 22 SKNRPYFALVVDDDPMIRR-IHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFI 77
S P L++DD PM+R + +I S+ + V A NG++ ++L + ++ +
Sbjct: 1 SNQEPATILLIDDHPMLRTGVKQLI--SMAPDITVVGEASNGEQGIELAESLDPD-LILL 57
Query: 78 DMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLD 123
D+ MP M+G+E +R + +IV + N E + ++ G D
Sbjct: 58 DLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGAD 103
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG 86
Y +VDD+ +R+ + +L GF V++ ++ EA F + ++ D+ MP M G
Sbjct: 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSA-EAFLAFAPDVRNGVLVTDLRMPDMSG 62
Query: 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140
+E + + +K+ + +T M+AG KP I+ +E
Sbjct: 63 VELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIE 116
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFH-IVFIDMEMPVMDGIE 88
++DDD +R+ L+ GF V + EA L A F IV D+ MP MDG+
Sbjct: 7 FLIDDDRDLRKAMQQTLELAGFTVSSFASATEA--LAGLSADFAGIVISDIRMPGMDGLA 64
Query: 89 ATKAMRAMKVESKIVGVT 106
+ + A+ + ++ VT
Sbjct: 65 LFRKILALDPDLPMILVT 82
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFH-IVFIDMEMPVMDGIE 88
++DDD +R+ L+ GF V + EA L A F IV D+ MP MDG+
Sbjct: 7 FLIDDDRDLRKAMQQTLELAGFTVSSFASATEA--LAGLSADFAGIVISDIRMPGMDGLA 64
Query: 89 ATKAMRAMKVESKIVGVT 106
+ + A+ + ++ VT
Sbjct: 65 LFRKILALDPDLPMILVT 82
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+V+D+ + R + S+G +A +G +A++L G ++ D+ MP M+G++
Sbjct: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-GGFTPDLMICDIAMPRMNGLKL 69
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPL 130
+ +R ++ ++ +++ + + ++ G++ KP+
Sbjct: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110
>pdb|2QVG|A Chain A, The Crystal Structure Of A Two-Component Response
Regulator From Legionella Pneumophila
Length = 143
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 33 DDDPMIRRIHSMILK-SVGFKVEVAENGKEAVDLF---RTGAKFH--IVFIDMEMPVMDG 86
DD+ I+ + + K S K+E+A++G +A+D K H ++ +D+ +P +G
Sbjct: 15 DDEVDIQSVERVFHKISSLIKIEIAKSGNQALDXLYGRNKENKIHPKLILLDINIPKXNG 74
Query: 87 IEATKAMR--AMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143
IE K +R + + ++ +T+ + ++ F + KPL + + L LQ
Sbjct: 75 IEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVG-FKVEV-AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI 87
++ +D M+R+ ++K G F++ +NG +A+ L ++V +D+EMP M G+
Sbjct: 7 IIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE-YNPNVVILDIEMPGMTGL 65
Query: 88 EATKAMRAMKVESKIVGVTS 107
E +R + K++ VT+
Sbjct: 66 EVLAEIRKKHLNIKVIIVTT 85
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 56 AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104
A+ GK A D+F G F ++ +D++ +G+E T + A +K+ G
Sbjct: 11 ADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTG 59
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 56 AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104
A+ GK A D+F G F ++ +D++ +G+E T + A +K+ G
Sbjct: 8 ADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTG 56
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEA----VDLFRTGAKFHIVFIDMEMPVMD 85
LVVDD+ I S IL+ G+ + A+ +EA +LF F ++ +D+ MP D
Sbjct: 5 LVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF-----FPVIVLDVWMPDGD 59
Query: 86 GIEATKAMRAMKVESKIVGVTSRNS 110
G+ ++ +S ++ +T S
Sbjct: 60 GVNFIDFIKENSPDSVVIVITGHGS 84
>pdb|3HDV|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|D Chain D, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
Length = 136
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM 84
RP LVVDD+ + R + LKS G A+ +EA + + D+
Sbjct: 7 RP-LVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLXITDLRXQPE 65
Query: 85 DGIEATKAMRAMKVESKIVGVTSRNSETEREV-FMQAGLDLCYTKPLTMAKIVPLL 139
G++ + +RA + + + V S +++ E V G+ KP+ + K++ L+
Sbjct: 66 SGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVXHLGVVDFLLKPVDLGKLLELV 121
>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution
Length = 295
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 56 AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104
A+ GK A D+F G F ++ +D++ +G+E T + A +K+ G
Sbjct: 20 ADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNG 68
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAK-FHIVFIDMEMPVMDGIE 88
LV+DD+ I + +L+ G +V A + E + +F +V DM+MP + G++
Sbjct: 7 LVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMD 66
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131
+ ++ + ++ +T + M+ G KP+T
Sbjct: 67 ILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVT 109
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEA----VDLFRTGAKFHIVFIDMEMPVMD 85
LVVDD+ I S IL+ G+ + A+ +EA +LF F ++ +D+ P D
Sbjct: 4 LVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF-----FPVIVLDVWXPDGD 58
Query: 86 GIEATKAMRAMKVESKIVGVTSRNS 110
G+ ++ +S ++ +T S
Sbjct: 59 GVNFIDFIKENSPDSVVIVITGHGS 83
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK--VEVAENGKEAVDLFRTGAKFH--IVFIDMEMPVMD 85
L VDD ++R+I + I+ S V A + A DL + KF+ ++ +D+EMP MD
Sbjct: 7 LSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK---KFNPDVLTLDVEMPRMD 63
Query: 86 G---IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKP 129
G +E +R M V + +T + SE +D TKP
Sbjct: 64 GLDFLEKLMRLRPMPV-VMVSSLTGKGSEVTLRALELGAIDFV-TKP 108
>pdb|1M72|A Chain A, Crystal Structure Of Caspase-1 From Spodoptera
Frugiperda
pdb|1M72|B Chain B, Crystal Structure Of Caspase-1 From Spodoptera
Frugiperda
pdb|1M72|C Chain C, Crystal Structure Of Caspase-1 From Spodoptera
Frugiperda
Length = 272
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 26/76 (34%)
Query: 9 SSSKKARISENPVSKNRPYF---------ALVVDDDPMIRRIHSM--------------- 44
SSS+ R++ PV +N PY+ A++ + + IHS+
Sbjct: 6 SSSQPNRVARMPVDRNAPYYNMNHKHRGMAIIFNHEHF--DIHSLKSRTGTNVDSDNLSK 63
Query: 45 ILKSVGFKVEVAENGK 60
+LK++GFKV V N K
Sbjct: 64 VLKTLGFKVTVFPNLK 79
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG 86
Y +VDD+ +R+ + +L GF V++ ++ EA F + ++ + MP M G
Sbjct: 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSA-EAFLAFAPDVRNGVLVTXLRMPDMSG 62
Query: 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140
+E + + +K+ + +T M+AG KP I+ +E
Sbjct: 63 VELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIE 116
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 30 LVVDDDPMIRR--IHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG 86
L+VDD+ + R I ++ K++ F +++ A++G A+ + +++ D+ MP MDG
Sbjct: 6 LIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPP-NVLLTDVRMPRMDG 64
Query: 87 IE 88
IE
Sbjct: 65 IE 66
>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
Burkholderia Pseudomallei With A Phosphorylated Aspartic
Acid, Calcium Ion And Citrate
Length = 184
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGA-KFHIVFIDMEMPVMDGIE 88
LV+DD+ + + L+ G+ V A N EA+ L GA KF + + + + G+
Sbjct: 11 LVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKL--AGAEKFEFITVXLHLGNDSGLS 68
Query: 89 ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145
+ ++ +++I+ +T S ++ G D KP A + +L LQ N
Sbjct: 69 LIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKP---ANVESILAALQTN 122
>pdb|2QV0|A Chain A, Crystal Structure Of The Response Regulatory Domain Of
Protein Mrke From Klebsiella Pneumoniae
pdb|2QV0|B Chain B, Crystal Structure Of The Response Regulatory Domain Of
Protein Mrke From Klebsiella Pneumoniae
Length = 143
Score = 29.3 bits (64), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDL--FRTGAKFHIVFIDMEMPVMDGI 87
++V+D+ + ++ S ++ + ++E+ + + +D+ F K +F+D+ +P +DG+
Sbjct: 13 IIVEDEFLAQQELSWLINTHS-QMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGV 71
Query: 88 EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142
+ + + IV +T+ E E F D KP ++I+ +L++L
Sbjct: 72 LLAQNISQFAHKPFIVFITAW-KEHAVEAFELEAFDYI-LKPYQESRIINMLQKL 124
>pdb|2NN3|C Chain C, Structure Of Pro-Sf-Caspase-1
pdb|2NN3|D Chain D, Structure Of Pro-Sf-Caspase-1
Length = 310
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 26/76 (34%)
Query: 9 SSSKKARISENPVSKNRPYF---------ALVVDDDPMIRRIHSM--------------- 44
SSS+ R++ PV +N PY+ A++ + + IHS+
Sbjct: 34 SSSQPNRVARMPVDRNAPYYNMNHKHRGMAIIFNHEHF--DIHSLKSRTGTNVDSDNLSK 91
Query: 45 ILKSVGFKVEVAENGK 60
+LK++GFKV V N K
Sbjct: 92 VLKTLGFKVTVFPNLK 107
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDDD + +++L+ GF V +G +A+ R ++ +GI+
Sbjct: 9 LVVDDDASLAEXLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLXLPG-XNGIDV 67
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPL 130
+ +RA IV +T++ + + +++G D KP
Sbjct: 68 CRVLRA-DSGVPIVXLTAKTDTVDVVLGLESGADDYIXKPF 107
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG 86
Y LVVDD P I + L+ G++ A +G+E ++ +V +D+ DG
Sbjct: 4 YTILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPP-DLVLLDIXXEPXDG 62
Query: 87 IEATKAMR 94
E + ++
Sbjct: 63 WETLERIK 70
>pdb|2RDM|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
Length = 132
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM---PVMDG 86
L+ DD+ ++ L GF V +G +A++ ++GA V D+ P DG
Sbjct: 9 LLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXLKSGAAIDGVVTDIRFCQPP--DG 66
Query: 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGL--DLCYTKPLTMAKIVPLLEEL 142
+ + R + IV ++ + + G+ + KP T A+++ + +L
Sbjct: 67 WQVARVAREIDPNXPIVYISGHAALE----WASNGVPDSIILEKPFTSAQLITAVSQL 120
>pdb|2R5U|A Chain A, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
pdb|2R5U|B Chain B, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
pdb|2R5U|C Chain C, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
pdb|2R5U|D Chain D, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
pdb|2R5U|E Chain E, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
pdb|2R5U|F Chain F, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
Length = 200
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 16 ISENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIV 75
IS P + N Y+A +V + ++RR+ + V + AE A + R A+ + V
Sbjct: 110 ISTVPTAANAGYYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDV 169
Query: 76 --------FI---DMEMPVMDGIEA 89
F+ D+ P MD I+A
Sbjct: 170 ADRRLSEDFVALEDLLQPTMDEIDA 194
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b
Length = 346
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142
SRN E ++ + Q +D+ T PL PL++E+
Sbjct: 96 SRNEEHHQDTYRQIHIDIPRTNPLIPLFQQPLVQEI 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,625,316
Number of Sequences: 62578
Number of extensions: 122102
Number of successful extensions: 562
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 157
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)