BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045936
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M8Y4|ARR22_ARATH Two-component response regulator ARR22 OS=Arabidopsis thaliana
GN=ARR22 PE=2 SV=1
Length = 142
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 83/122 (68%), Gaps = 2/122 (1%)
Query: 23 KNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG-AKFHIVFIDMEM 81
K + L+VDDDP+ RR+H MI+K++G + A+NG+EAV L R G A F ++ +D EM
Sbjct: 18 KKKLINVLIVDDDPLNRRLHEMIIKTIGGISQTAKNGEEAVILHRDGEASFDLILMDKEM 77
Query: 82 PVMDGIEATKAMRAMKVESKIVGVTS-RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140
P DG+ TK +R MKV S IVGVTS + E ER+ FM+AGL+ C KPLT AKI PL+
Sbjct: 78 PERDGVSTTKKLREMKVTSMIVGVTSVADQEEERKAFMEAGLNHCLEKPLTKAKIFPLIS 137
Query: 141 EL 142
L
Sbjct: 138 HL 139
>sp|P14376|RCSC_ECOLI Sensor kinase protein RcsC OS=Escherichia coli (strain K12) GN=rcsC
PE=1 SV=3
Length = 949
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 17 SENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVF 76
++ VS N LVVDD P+ RR+ + L S+G++ + A +G +A+++ + IV
Sbjct: 815 TDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-SKNHIDIVL 873
Query: 77 IDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTM 132
D+ MP MDG T+ +R + + ++GVT+ E++ +++G+D C +KP+T+
Sbjct: 874 SDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929
>sp|Q56128|RCSC_SALTI Sensor protein RcsC OS=Salmonella typhi GN=rcsC PE=3 SV=2
Length = 948
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 17 SENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVF 76
++ N LVVDD P+ RR+ + L S+G++ + A +G +A+++ A IV
Sbjct: 815 TDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNA-IDIVL 873
Query: 77 IDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTM 132
D+ MP MDG T+ +R + + +VGVT+ E++ +++G+D C +KP+T+
Sbjct: 874 SDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929
>sp|P58662|RCSC_SALTY Sensor protein RcsC OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=rcsC PE=3 SV=1
Length = 948
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 17 SENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVF 76
++ N LVVDD P+ RR+ + L S+G++ + A +G +A+++ A IV
Sbjct: 815 TDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNA-IDIVL 873
Query: 77 IDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTM 132
D+ MP MDG T+ +R + + +VGVT+ E++ +++G+D C +KP+T+
Sbjct: 874 SDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929
>sp|Q55E44|DHKE_DICDI Hybrid signal transduction histidine kinase E OS=Dictyostelium
discoideum GN=dhkE PE=3 SV=1
Length = 1699
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 20 PVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDM 79
PV+ +R AL+VDD + R++ + +L+ + + V AENG EA+ + F I+F+D
Sbjct: 1568 PVTPHRRN-ALIVDDTELNRKVLAQLLRRMDWSVSFAENGIEALKEITSERCFDIIFMDC 1626
Query: 80 EMPVMDGIEATKAMRAMKVES-----KIVGVTSRNSETEREVFMQAGLDLCYTKPLTM 132
+MP++DG E TK +R ++E+ IV +++ +S + +V G++ KP+T+
Sbjct: 1627 QMPILDGFETTKLLRLRELENNWKPLNIVALSADSSSSFGQVCFDCGMNGYLGKPITL 1684
>sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase A OS=Dictyostelium
discoideum GN=dhkA PE=1 SV=1
Length = 2150
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
Query: 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
AL+V+D+ + R++ + + K + + + AENG+EA+ F IVF+D +MPV+DG +
Sbjct: 2027 ALIVEDNELNRKVLAQLFKKIDWTISFAENGREALKEITGERCFDIVFMDCQMPVLDGFQ 2086
Query: 89 ATKAMRAMKVES-----KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
TK +R+ + E+ IV +++ +S + + + +G+D KP+T+A +
Sbjct: 2087 TTKIIRSKERENNWKRMNIVALSAGSSSSFVQDCLDSGMDSFMGKPITLATL 2138
>sp|Q86AT9|DHKI_DICDI Hybrid signal transduction histidine kinase I OS=Dictyostelium
discoideum GN=dhkI-1 PE=3 SV=1
Length = 1736
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 22 SKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVF----I 77
S+ P LV +D+ M +++ +L GF + +A++GK+A+D + I++ +
Sbjct: 1545 SQMIPQKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSILYDCILM 1604
Query: 78 DMEMPVMDGIEATKAMRAMKVES----KIVGVTSRNSETEREVFMQAGLDLCYTKPL 130
D++MP++ G+EAT A+R ++ I+ VT+ + ++E F+++G+D TKP+
Sbjct: 1605 DIQMPILSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPI 1661
>sp|A1TEL7|MPRA_MYCVP Response regulator MprA OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=mprA PE=3 SV=1
Length = 231
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD 85
P LVVDDD +R L G+ VE+A++G+EA+DL + V +D+ MP +D
Sbjct: 2 PVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLI-ASDRPDAVVLDVMMPRLD 60
Query: 86 GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
G+E + +R+ + I+ +T+R+S +ER + AG D KP + +++
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELL 111
>sp|Q9P896|TCSA_EMENI Two-component system protein A OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tcsA
PE=3 SV=2
Length = 682
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGA-KFHIVFIDMEMPVMDGI 87
L+V+D+ + + +L ++GF +++ A NG EAV + R + I+ +D+ MPV+DG+
Sbjct: 565 LLVEDNIVNHTVMLKLLHTIGFQRIDGAWNGAEAVRMVRQKPLSYDIILMDVSMPVLDGL 624
Query: 88 EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLL 139
AT+ +R M + I+ +T + + E ++ G+D C KP+ +++ +L
Sbjct: 625 AATEQIRDMGLTMPIIAITGNAMKGDAETYIAQGMDDCICKPVHRDQLLRVL 676
>sp|P39663|SPHR_SYNE7 Alkaline phosphatase synthesis transcriptional regulatory protein
SphR OS=Synechococcus elongatus (strain PCC 7942)
GN=sphR PE=1 SV=1
Length = 257
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 70/115 (60%), Gaps = 8/115 (6%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGA--------KFHIVFIDMEM 81
LVV+D+ +IR + +++L+ GF V+VA +G+ A++ FR+ + +V +D+ +
Sbjct: 27 LVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDLML 86
Query: 82 PVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
P ++G++ + +R V I+ ++++++ET+R V ++ G D TKP ++V
Sbjct: 87 PAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELV 141
>sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1
Length = 1080
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 10/111 (9%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDD+ + RR+ + LK G +V AE+G+ A+ L + F F+D++MP MDG EA
Sbjct: 948 LVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFEA 1007
Query: 90 TKAMRAMKVESK----------IVGVTSRNSETEREVFMQAGLDLCYTKPL 130
T+ +R M+ E+K I+ +T+ E +++G+D +KP
Sbjct: 1008 TRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPF 1058
>sp|Q54SK5|DHKM_DICDI Hybrid signal transduction histidine kinase M OS=Dictyostelium
discoideum GN=dhkM PE=3 SV=1
Length = 2388
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFR-TGAKFHIVFIDMEMPVMDGIE 88
L+V+D+ + +I +L+ F+VE+++NG+ A++ + + + F ++ +D+ MPVMDGI
Sbjct: 2264 LLVEDNLVNAKIAMTVLRKHNFRVELSKNGQLAMERIKQSHSSFDLILMDIHMPVMDGIT 2323
Query: 89 ATKAMRAMKVES-----KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143
+K R + E I+ +T+ + + + ++AG + +KPL A ++ LL++L
Sbjct: 2324 CSKLTRKFETEHGLKHLPIIALTADATTGHKNLCLEAGCNEFMSKPLDYALLISLLKKLV 2383
Query: 144 KN 145
N
Sbjct: 2384 FN 2385
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLF--RTGAKFHIVFIDMEMP--VMD 85
LV+DD+P I ++ +M L+ GFKV + A+ F R G F+++ +D +P V+D
Sbjct: 1543 LVIDDNPNIGKVIAMHLEPFGFKVFQRTTFQSAIYFFNERNG-DFNLILLDPLIPSLVID 1601
Query: 86 GIEATK 91
I+ K
Sbjct: 1602 EIKQMK 1607
>sp|Q1B3X8|MPRA_MYCSS Response regulator MprA OS=Mycobacterium sp. (strain MCS) GN=mprA
PE=3 SV=1
Length = 230
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD 85
P LVVDDD +R L G+ VE+A++G EA+DL + V +D+ MP +D
Sbjct: 2 PVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLI-ANNRPDAVVLDVMMPRLD 60
Query: 86 GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
G+E + +R+ + I+ +T+R+S +ER + AG D KP + +++
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELL 111
>sp|A1UL70|MPRA_MYCSK Response regulator MprA OS=Mycobacterium sp. (strain KMS) GN=mprA
PE=3 SV=1
Length = 230
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD 85
P LVVDDD +R L G+ VE+A++G EA+DL + V +D+ MP +D
Sbjct: 2 PVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLI-ANNRPDAVVLDVMMPRLD 60
Query: 86 GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
G+E + +R+ + I+ +T+R+S +ER + AG D KP + +++
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELL 111
>sp|A3Q5L9|MPRA_MYCSJ Response regulator MprA OS=Mycobacterium sp. (strain JLS) GN=mprA
PE=3 SV=1
Length = 230
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD 85
P LVVDDD +R L G+ VE+A++G EA+DL + V +D+ MP +D
Sbjct: 2 PVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLI-ANNRPDAVVLDVMMPRLD 60
Query: 86 GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
G+E + +R+ + I+ +T+R+S +ER + AG D KP + +++
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELL 111
>sp|P30855|EVGS_ECOLI Sensor protein EvgS OS=Escherichia coli (strain K12) GN=evgS PE=1
SV=2
Length = 1197
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Query: 17 SENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVF 76
+E P++ L+ DD P R + L +G+ V+ A +G +A+ + + ++
Sbjct: 949 AEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV-SMQHYDLLI 1007
Query: 77 IDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
D+ MP MDG E T+ +R I G+T+ ERE + G++LC KPLT+ +
Sbjct: 1008 TDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLK 1067
Query: 137 PLLEELQK 144
L +L +
Sbjct: 1068 THLSQLHQ 1075
>sp|Q9HUI2|ARUR_PSEAE Transcriptional regulatory protein AruR OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=aruR PE=3 SV=1
Length = 244
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEA----VDLFRTGAKFHIVFIDMEMPVMD 85
LVVDDDP+IR + L G+ V A N ++A + G +V +D+ +P D
Sbjct: 8 LVVDDDPVIRELLQAYLGEEGYDVLCAGNAEQAEACLAECAHLGQPVELVLLDIRLPGKD 67
Query: 86 GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
G+ T+ +R ++ E I+ +T RN E +R V ++ G D KPL ++V
Sbjct: 68 GLTLTRELR-VRSEVGIILITGRNDEIDRIVGLECGADDYVIKPLNPRELV 117
>sp|P48027|GACS_PSESY Sensor protein GacS OS=Pseudomonas syringae pv. syringae GN=gacS
PE=3 SV=1
Length = 907
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 20 PVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDM 79
P+S P L VDD+P + +L+ +G +V E G AV+ + A F +V +D+
Sbjct: 651 PLSSRAPR-VLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAVQQEA-FDLVLMDV 708
Query: 80 EMPVMDGIEATKAMRAMKVESK-----IVGVTSRNSETEREVFMQAGLDLCYTKPLT--- 131
+MP MDG +AT+A+RA + E IV +T+ E+ +Q+G+D TKP++
Sbjct: 709 QMPGMDGRQATEAIRAWEAERNQSSLPIVALTAHAMANEKRSLLQSGMDDYLTKPISERQ 768
Query: 132 MAKIV 136
+A++V
Sbjct: 769 LAQVV 773
>sp|O74539|MAK3_SCHPO Peroxide stress-activated histidine kinase mak3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mak3 PE=1 SV=1
Length = 2344
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAK--FHIVFIDMEMPVMDGI 87
L+ +D+P++R L+ +G V+ AE+GKE + +F + + + F+D MPV DG+
Sbjct: 2213 LIAEDNPIVRMTLKKQLEHLGMDVDAAEDGKETLQIFESHPDNYYQVCFVDYHMPVYDGL 2272
Query: 88 EATKAMRAMKVESK-------IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLL 139
E T+ MR K+E K I +T+ T F + G+ +KP ++ +L
Sbjct: 2273 EVTRRMR--KIERKHGCAPLPIFALTADMQPTMETQFQEVGITHYLSKPFKKETLIKML 2329
>sp|P58402|EVGS_ECO57 Sensor protein EvgS OS=Escherichia coli O157:H7 GN=evgS PE=3 SV=1
Length = 1197
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Query: 17 SENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVF 76
+E P++ L+ DD P R + L +G+ V+ A +G +A+ + + ++
Sbjct: 949 AEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV-SMQHYDLLI 1007
Query: 77 IDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
D+ MP +DG E T+ +R I G+T+ ERE + G++LC KPLT+ +
Sbjct: 1008 TDVNMPNVDGFELTRKLREQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLDVLK 1067
Query: 137 PLLEELQK 144
L +L +
Sbjct: 1068 THLSQLHQ 1075
>sp|A0R3I8|MPRA_MYCS2 Response regulator MprA OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=mprA PE=1 SV=1
Length = 230
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDDD +R L G+ VE+A++G EA+D T + + +D+ MP +DG+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAI-TNNRPDALILDVMMPRLDGLEV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144
+ +R+ + I+ +T+R+S +ER + AG D KP + +++ + L +
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119
>sp|Q7A0U4|SRRA_STAAW Transcriptional regulatory protein SrrA OS=Staphylococcus aureus
(strain MW2) GN=srrA PE=3 SV=1
Length = 241
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD+ IRR+ M L+ F++ A NG+EA +L + + +D+ +P MDGI+
Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMEN-NYACILLDLMLPEMDGIQV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+R K ++ I+ +T++ ET R ++G D KP + ++V
Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVV 110
>sp|Q9L524|SRRA_STAAU Transcriptional regulatory protein SrrA OS=Staphylococcus aureus
GN=srrA PE=2 SV=2
Length = 241
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD+ IRR+ M L+ F++ A NG+EA +L + + +D+ +P MDGI+
Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMEN-NYACILLDLMLPEMDGIQV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+R K ++ I+ +T++ ET R ++G D KP + ++V
Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVV 110
>sp|Q6G972|SRRA_STAAS Transcriptional regulatory protein SrrA OS=Staphylococcus aureus
(strain MSSA476) GN=srrA PE=3 SV=2
Length = 241
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD+ IRR+ M L+ F++ A NG+EA +L + + +D+ +P MDGI+
Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMEN-NYACILLDLMLPEMDGIQV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+R K ++ I+ +T++ ET R ++G D KP + ++V
Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVV 110
>sp|Q6GGK6|SRRA_STAAR Transcriptional regulatory protein SrrA OS=Staphylococcus aureus
(strain MRSA252) GN=srrA PE=3 SV=2
Length = 241
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD+ IRR+ M L+ F++ A NG+EA +L + + +D+ +P MDGI+
Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMEN-NYACILLDLMLPEMDGIQV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+R K ++ I+ +T++ ET R ++G D KP + ++V
Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVV 110
>sp|Q7A5H6|SRRA_STAAN Transcriptional regulatory protein SrrA OS=Staphylococcus aureus
(strain N315) GN=srrA PE=1 SV=1
Length = 241
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD+ IRR+ M L+ F++ A NG+EA +L + + +D+ +P MDGI+
Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMEN-NYACILLDLMLPEMDGIQV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+R K ++ I+ +T++ ET R ++G D KP + ++V
Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVV 110
>sp|Q7A2R6|SRRA_STAAM Transcriptional regulatory protein SrrA OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=srrA PE=1 SV=1
Length = 241
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD+ IRR+ M L+ F++ A NG+EA +L + + +D+ +P MDGI+
Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMEN-NYACILLDLMLPEMDGIQV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+R K ++ I+ +T++ ET R ++G D KP + ++V
Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVV 110
>sp|Q5HFT0|SRRA_STAAC Transcriptional regulatory protein SrrA OS=Staphylococcus aureus
(strain COL) GN=srrA PE=2 SV=1
Length = 241
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD+ IRR+ M L+ F++ A NG+EA +L + + +D+ +P MDGI+
Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMEN-NYACILLDLMLPEMDGIQV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+R K ++ I+ +T++ ET R ++G D KP + ++V
Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVV 110
>sp|Q2FY79|SRRA_STAA8 Transcriptional regulatory protein SrrA OS=Staphylococcus aureus
(strain NCTC 8325) GN=srrA PE=3 SV=1
Length = 241
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+VDD+ IRR+ M L+ F++ A NG+EA +L + + +D+ +P MDGI+
Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMEN-NYACILLDLMLPEMDGIQV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+R K ++ I+ +T++ ET R ++G D KP + ++V
Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVV 110
>sp|O14002|MAK2_SCHPO Peroxide stress-activated histidine kinase mak2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mak2 PE=3 SV=1
Length = 2310
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLF--RTGAKFHIVFIDMEMPVMD 85
+AL+ +D+ + R++ + L ++GF+V A +G E V ++ + + ++F D MP+ D
Sbjct: 2180 YALIAEDNLIARKLLTKQLSNLGFQVHAAVDGVELVKMYEAKQFGFYSVIFADYHMPIRD 2239
Query: 86 GIEATKAMRAMKVESK------IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLL 139
G EA +RA + E+ ++ +T+ ++ ++ ++ G++ TKP T ++V +
Sbjct: 2240 GAEAVMDIRAYERENNCSTPIPVIALTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAV 2299
Query: 140 EEL 142
E
Sbjct: 2300 REF 2302
>sp|P35163|RESD_BACSU Transcriptional regulatory protein ResD OS=Bacillus subtilis
(strain 168) GN=resD PE=3 SV=2
Length = 240
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG--AKFHIVFIDMEMPVMDGI 87
LVVDD+ IRR+ M L+ + ++ AENG EA+ G A + ++ +D+ MP DGI
Sbjct: 10 LVVDDEARIRRLLRMYLERENYAIDEAENGDEAI---AKGLEANYDLILLDLMMPGTDGI 66
Query: 88 EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
E + +R K + I+ +T++ E R +AG D KP + ++V
Sbjct: 67 EVCRQIREKKA-TPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVV 114
>sp|A1KHB7|MPRA_MYCBP Response regulator MprA OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=mprA PE=3 SV=1
Length = 230
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDDD +R L G+ VE+A +G EA+D+ + +V +D+ MP +DG+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALV-LDVMMPRLDGLEV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144
+ +R+ + I+ +T+R+S +ER + AG D KP + +++ + L +
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119
>sp|Q7U0X4|MPRA_MYCBO Response regulator MprA OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=mprA PE=1 SV=1
Length = 230
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDDD +R L G+ VE+A +G EA+D+ + +V +D+ MP +DG+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALV-LDVMMPRLDGLEV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144
+ +R+ + I+ +T+R+S +ER + AG D KP + +++ + L +
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119
>sp|Q742C1|MPRA_MYCPA Response regulator MprA OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=mprA PE=3 SV=1
Length = 228
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDDD +R L G+ VE+A +G EA+D+ + +V +D+ MP +DG+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALV-LDVMMPRLDGLEV 62
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145
+ +R+ + I+ +T+R+S +ER + AG D KP + +++ + L +
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118
>sp|A0QBQ9|MPRA_MYCA1 Response regulator MprA OS=Mycobacterium avium (strain 104) GN=mprA
PE=3 SV=1
Length = 228
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDDD +R L G+ VE+A +G EA+D+ + +V +D+ MP +DG+E
Sbjct: 4 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALV-LDVMMPRLDGLEV 62
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145
+ +R+ + I+ +T+R+S +ER + AG D KP + +++ + L +
Sbjct: 63 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118
>sp|O53894|MPRA_MYCTU Response regulator MprA OS=Mycobacterium tuberculosis GN=mprA PE=1
SV=1
Length = 230
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDDD +R L G+ VE+A +G EA+D+ + +V +D+ MP +DG+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALV-LDVMMPRLDGLEV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145
+ +R + I+ +T+R+S +ER + AG D KP + +++ + L +
Sbjct: 65 CRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>sp|A5U123|MPRA_MYCTA Response regulator MprA OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=mprA PE=3 SV=1
Length = 230
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDDD +R L G+ VE+A +G EA+D+ + +V +D+ MP +DG+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALV-LDVMMPRLDGLEV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145
+ +R + I+ +T+R+S +ER + AG D KP + +++ + L +
Sbjct: 65 CRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>sp|Q9P4U6|TCSB_EMENI Two-component system protein B OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tcsB PE=1
SV=2
Length = 1065
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 74/129 (57%), Gaps = 14/129 (10%)
Query: 29 ALVVDDDPMIRRI--HSMILKSVGFKVEVAENGKEAVDLFRT----GAKFHIVFIDMEMP 82
ALV +D+ + + + + L+ V + V V ++G+EA D + G F ++F+D++MP
Sbjct: 935 ALVAEDNVVNQEVVLRMLALEDV-YDVTVVKDGQEAYDTVKANMEEGKVFDLIFMDIQMP 993
Query: 83 VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPL-------TMAKI 135
+DGIE+T+ +R M + IV +++ + ++ + M +G+D+ +KP+ + +
Sbjct: 994 NLDGIESTRLIRQMGCSAPIVALSAFSEDSNIKDCMNSGMDMFISKPIRRPALKQVLRRF 1053
Query: 136 VPLLEELQK 144
P+ EE +K
Sbjct: 1054 TPIPEEAEK 1062
>sp|Q54YH4|DHKB_DICDI Hybrid signal transduction histidine kinase B OS=Dictyostelium
discoideum GN=dhkB PE=1 SV=1
Length = 1969
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 74/129 (57%), Gaps = 16/129 (12%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+V+D+ + +I S +LK G+ +VA NG EAV+ + GA + ++ +D +MP MDG EA
Sbjct: 1842 LLVEDNFVNVKIFSKLLKDSGYIFDVAHNGVEAVECVKKGA-YDLILMDCQMPEMDGFEA 1900
Query: 90 TKAMRAMK----VESK---------IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
T A+R ++ +ES IV +T+ + +++ + G++ KP+ + I
Sbjct: 1901 TTAIRELEKSNLIESPPSKKHSHVVIVALTANSGYKDKQKCLSVGMNDFLQKPIKTSDI- 1959
Query: 137 PLLEELQKN 145
L++ ++K+
Sbjct: 1960 -LIQMIKKH 1967
>sp|Q86CZ2|DHKK_DICDI Hybrid signal transduction histidine kinase K OS=Dictyostelium
discoideum GN=dhkK PE=1 SV=1
Length = 1213
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
L+ +D+ + +R+ L+ +G K EVA NG E +++ + ++F+D +MP++DG+
Sbjct: 1078 LIAEDNIINQRVAVKFLEKIGIKAEVAGNGNEVLEILER-QHYDLIFMDFQMPILDGLRC 1136
Query: 90 TKAMRAMKVESK---------IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140
+K +R + K I G+T+ T+++ G++ +KP + ++ +E
Sbjct: 1137 SKTIREFEQNHKWNRICPSIFICGLTANTMSTDKKRCFDHGMNHFISKPFQLEQLRSAIE 1196
>sp|Q551X9|DHKF_DICDI Hybrid signal transduction histidine kinase F OS=Dictyostelium
discoideum GN=dhkF PE=3 SV=1
Length = 1109
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Query: 23 KNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP 82
+ RP L+VDD+ + R++ + LK +G+ + A NG E ++ + + ++F+D+ MP
Sbjct: 924 RTRPRI-LLVDDNAVNRKVVKLQLKKLGYDCDTATNGFEGFEM-QKKDNYELIFMDLNMP 981
Query: 83 VMDGIEATKAMRA------MKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136
+ DG A+K +R+ K + IVG+++ ++ + G+D KPL K+
Sbjct: 982 LCDGSMASKLIRSHEELNNYKSRANIVGLSATYLHGSKDYCVSMGMDDFVVKPL---KLQ 1038
Query: 137 PLLEELQK 144
PL E ++K
Sbjct: 1039 PLGELVKK 1046
>sp|A0PWB4|MPRA_MYCUA Response regulator MprA OS=Mycobacterium ulcerans (strain Agy99)
GN=mprA PE=3 SV=1
Length = 232
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89
LVVDDD +R L G+ VE+A +G EA+++ + +V +D+ MP +DG+E
Sbjct: 6 LVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALV-LDVMMPRLDGLEV 64
Query: 90 TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145
+ +R+ + I+ +T+R+S +ER + AG D KP + +++ + L +
Sbjct: 65 CRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>sp|C4YM07|SRR1_CANAW Stress response regulator protein 1 OS=Candida albicans (strain
WO-1) GN=SRR1 PE=3 SV=1
Length = 282
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAE--NGKEAVDLFRTGAKFHIVFIDMEMPVM 84
Y L+VDD+ + +I + IL + K + + + K DL + F +FID+EMP +
Sbjct: 154 YSFLIVDDNIINLKILNRILLKLFPKCHIVQIQDSKLVKDLLHKQS-FDSIFIDIEMPDV 212
Query: 85 DGIEATKAMRA-MKVES-KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMA 133
+GI+ + +R K ++ +V VT+RNS + E+F Q G+D + KPL +
Sbjct: 213 NGIDIAQFVRQDTKFDNMGMVAVTTRNSTQDLELFKQCGIDFTFHKPLNYS 263
>sp|Q59M56|SRR1_CANAL Stress response regulator protein 1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SRR1 PE=3 SV=1
Length = 282
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAE--NGKEAVDLFRTGAKFHIVFIDMEMPVM 84
Y L+VDD+ + +I + IL + K + + + K DL + F +FID+EMP +
Sbjct: 154 YSFLIVDDNIINLKILNRILLKLFPKCHIVQIQDSKLVKDLLHKQS-FDSIFIDIEMPDV 212
Query: 85 DGIEATKAMRA-MKVES-KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMA 133
+GI+ + +R K ++ +V VT+RNS + E+F Q G+D + KPL +
Sbjct: 213 NGIDIAQFVRQDTKFDNMGMVAVTTRNSTQDLELFKQCGIDFTFHKPLNYS 263
>sp|A7MRY4|LUXN_VIBHB Autoinducer 1 sensor kinase/phosphatase LuxN OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=luxN PE=1 SV=1
Length = 849
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 11 SKKARISENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGA 70
S + +++ N N+ L+VDD + R + M L +G A NG+ AV++F+
Sbjct: 705 SNEHKVAPNVQINNQSPTVLIVDDKEVQRALVQMYLNQLGVNSLQANNGENAVEVFKAN- 763
Query: 71 KFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPL 130
++ +D++MPVM+G +A++ ++ + ++ IV ++ + E E ++ + +D KP
Sbjct: 764 HVDLILMDVQMPVMNGFDASQRIKELSPQTPIVALSGESGERELDMINKL-MDGRLEKPT 822
Query: 131 TM 132
T+
Sbjct: 823 TL 824
>sp|P0C5S6|LUXN_VIBHA Autoinducer 1 sensor kinase/phosphatase LuxN OS=Vibrio harveyi
GN=luxN PE=3 SV=1
Length = 849
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 11 SKKARISENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGA 70
S + +++ N N+ L+VDD + R + M L +G A NG+ AV++F+
Sbjct: 705 SNEHKVAPNVQINNQSPTVLIVDDKEVQRALVQMYLNQLGVNSLQANNGENAVEVFKAN- 763
Query: 71 KFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPL 130
++ +D++MPVM+G +A++ ++ + ++ IV ++ + E E ++ + +D KP
Sbjct: 764 HVDLILMDVQMPVMNGFDASQRIKELSPQTPIVALSGESGERELDMINKL-MDGRLEKPT 822
Query: 131 TM 132
T+
Sbjct: 823 TL 824
>sp|Q06065|ATOC_ECOLI Acetoacetate metabolism regulatory protein AtoC OS=Escherichia coli
(strain K12) GN=atoC PE=3 SV=2
Length = 461
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFH--IVFIDMEMPVMDGI 87
L+VDD+ +RR+ S GF+ A NG+ A+ LF A H +V +D+ MP MDGI
Sbjct: 8 LIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF---ADIHPDVVLMDIRMPEMDGI 64
Query: 88 EATKAMRAMKVESKIVGVTS 107
+A K MR+ + + ++ +T+
Sbjct: 65 KALKEMRSHETRTPVILMTA 84
>sp|A3LP85|SRR1_PICST Stress response regulator protein 1 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=SRR1 PE=3 SV=3
Length = 289
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 25/146 (17%)
Query: 7 GASSSKKARISENPVSKN------------RP--YFALVVDDDPMIRRIHSMILKSVGFK 52
AS SK + S +PVS+N P Y L+VDD+ I+ IL+ + FK
Sbjct: 128 SASLSKPSFTSHSPVSENIDINLVIRRKSANPATYNFLIVDDN----IINIKILERILFK 183
Query: 53 VEVAENGKEAVDLFRTG-----AKFHIVFIDMEMPVMDGIEATKAMRAMKVESK--IVGV 105
+ N K+ D + KF +VF+D+EMP + G++ ++ MR V + I+ V
Sbjct: 184 LYPNCNIKKLQDPTKVANAIKTHKFDVVFLDIEMPEITGVDISREMRQQPVFNSVGIIAV 243
Query: 106 TSRNSETEREVFMQAGLDLCYTKPLT 131
T+R + V+ G+D + KPLT
Sbjct: 244 TTRTMAHDLLVYETVGIDYTFAKPLT 269
>sp|O22267|CKI1_ARATH Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1
Length = 1122
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 21/131 (16%)
Query: 30 LVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAK------------FHIVF 76
LVVDD+ + R++ + LK +G +VE ++GKEA+ L G F +F
Sbjct: 989 LVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIF 1048
Query: 77 IDMEMPVMDGIEATKAMRAMK----VESKIVGVTSRN--SETEREVFMQAGLDLCYTKPL 130
+D +MP MDG EAT+ +R ++ V + I+ V+ + SE RE +QAG+D K L
Sbjct: 1049 MDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARET-IQAGMDAFLDKSL 1107
Query: 131 T-MAKIVPLLE 140
+A ++ +E
Sbjct: 1108 NQLANVIREIE 1118
>sp|Q93P00|CHEY_YEREN Chemotaxis protein CheY OS=Yersinia enterocolitica GN=cheY PE=3
SV=3
Length = 129
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 30 LVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE 88
LVVDD +RRI +LK +GF VE AE+G +A++ RTG F V D MP MDG++
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLRTGG-FDFVVSDWNMPNMDGLD 67
Query: 89 ATKAMRAMKVESK--IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKI 135
K +RA ++ VT+ + QAG KP T A +
Sbjct: 68 LLKTIRADGALGTLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATL 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,443,335
Number of Sequences: 539616
Number of extensions: 1665416
Number of successful extensions: 5663
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 418
Number of HSP's that attempted gapping in prelim test: 5056
Number of HSP's gapped (non-prelim): 695
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)