Query 045936
Match_columns 145
No_of_seqs 120 out of 1173
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:03:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 8.1E-25 1.8E-29 153.4 16.6 117 27-145 1-118 (229)
2 PF00072 Response_reg: Respons 99.9 4.2E-22 9E-27 124.8 16.2 111 29-140 1-112 (112)
3 COG4753 Response regulator con 99.9 2.6E-22 5.5E-27 151.1 14.2 116 27-143 2-120 (475)
4 COG2204 AtoC Response regulato 99.9 2.1E-21 4.6E-26 146.3 16.5 118 26-144 4-121 (464)
5 COG4565 CitB Response regulato 99.9 1.8E-21 4E-26 131.8 14.0 116 27-143 1-118 (224)
6 COG2197 CitB Response regulato 99.9 1.3E-20 2.7E-25 130.9 16.4 118 27-145 1-120 (211)
7 COG4566 TtrR Response regulato 99.9 2.6E-20 5.6E-25 124.0 13.0 118 26-144 4-121 (202)
8 COG3437 Response regulator con 99.8 1.4E-19 3.1E-24 131.0 13.8 118 24-142 12-132 (360)
9 PRK10046 dpiA two-component re 99.8 8E-19 1.7E-23 123.0 16.6 117 26-143 4-122 (225)
10 PRK10816 DNA-binding transcrip 99.8 2E-18 4.3E-23 120.1 16.8 117 27-144 1-117 (223)
11 PRK09836 DNA-binding transcrip 99.8 3.5E-18 7.6E-23 119.1 17.0 117 27-144 1-117 (227)
12 PRK10840 transcriptional regul 99.8 6E-18 1.3E-22 117.7 16.4 119 26-145 3-126 (216)
13 PRK09468 ompR osmolarity respo 99.8 9.7E-18 2.1E-22 117.8 17.3 118 26-144 5-122 (239)
14 COG0784 CheY FOG: CheY-like re 99.8 1.4E-17 3E-22 106.7 16.5 118 25-143 4-124 (130)
15 PRK10643 DNA-binding transcrip 99.8 1E-17 2.2E-22 116.0 16.8 117 27-144 1-117 (222)
16 PRK10336 DNA-binding transcrip 99.8 1.1E-17 2.3E-22 115.8 16.7 117 27-144 1-117 (219)
17 PRK10529 DNA-binding transcrip 99.8 1.4E-17 3E-22 115.8 17.0 116 27-144 2-117 (225)
18 PRK11173 two-component respons 99.8 1.3E-17 2.9E-22 117.1 16.9 116 27-144 4-119 (237)
19 COG4567 Response regulator con 99.8 3.6E-18 7.8E-23 110.0 12.5 114 28-142 11-124 (182)
20 PRK10161 transcriptional regul 99.8 1.8E-17 4E-22 115.6 16.9 117 27-144 3-121 (229)
21 PRK11083 DNA-binding response 99.8 2.2E-17 4.7E-22 114.7 16.9 117 27-144 4-120 (228)
22 TIGR03787 marine_sort_RR prote 99.8 2.2E-17 4.7E-22 115.1 16.7 116 28-144 2-119 (227)
23 COG3706 PleD Response regulato 99.8 1.2E-17 2.5E-22 125.4 16.1 119 25-144 131-251 (435)
24 PRK10766 DNA-binding transcrip 99.8 2.5E-17 5.5E-22 114.3 16.6 116 27-144 3-118 (221)
25 PRK09958 DNA-binding transcrip 99.8 2.6E-17 5.7E-22 112.8 16.3 117 27-144 1-118 (204)
26 TIGR02154 PhoB phosphate regul 99.8 3.1E-17 6.8E-22 113.7 16.7 117 27-144 3-121 (226)
27 PRK10841 hybrid sensory kinase 99.8 2.1E-17 4.5E-22 135.6 17.9 118 25-143 800-917 (924)
28 PLN03029 type-a response regul 99.8 3.9E-17 8.5E-22 114.4 16.8 118 25-142 7-145 (222)
29 PRK11466 hybrid sensory histid 99.8 1.7E-17 3.7E-22 136.0 17.0 120 25-144 680-799 (914)
30 CHL00148 orf27 Ycf27; Reviewed 99.8 6.9E-17 1.5E-21 113.2 17.4 118 25-144 5-122 (240)
31 PRK10955 DNA-binding transcrip 99.8 4.7E-17 1E-21 113.5 16.4 114 28-144 3-116 (232)
32 PRK09483 response regulator; P 99.8 5.6E-17 1.2E-21 112.2 16.4 118 27-145 2-121 (217)
33 KOG0519 Sensory transduction h 99.8 1.7E-17 3.7E-22 133.7 15.4 120 25-144 665-785 (786)
34 TIGR01387 cztR_silR_copR heavy 99.8 6.1E-17 1.3E-21 111.7 16.1 115 29-144 1-115 (218)
35 PRK10430 DNA-binding transcrip 99.8 6.7E-17 1.5E-21 114.2 16.6 116 27-142 2-120 (239)
36 PRK11517 transcriptional regul 99.8 9.4E-17 2E-21 111.4 16.8 116 27-144 1-116 (223)
37 PRK11107 hybrid sensory histid 99.8 4.7E-17 1E-21 133.2 17.5 118 25-143 666-785 (919)
38 PRK10701 DNA-binding transcrip 99.8 1E-16 2.2E-21 112.7 16.8 115 28-144 3-117 (240)
39 PRK13856 two-component respons 99.8 9.5E-17 2.1E-21 113.2 16.5 115 28-144 3-118 (241)
40 PRK15347 two component system 99.8 9E-17 1.9E-21 131.7 17.7 117 26-143 690-810 (921)
41 TIGR02956 TMAO_torS TMAO reduc 99.7 1.1E-16 2.3E-21 131.9 17.3 118 25-143 701-821 (968)
42 PRK09935 transcriptional regul 99.7 3E-16 6.6E-21 107.7 16.8 118 26-144 3-122 (210)
43 PRK15115 response regulator Gl 99.7 1.3E-16 2.9E-21 121.7 15.9 117 26-143 5-121 (444)
44 COG3947 Response regulator con 99.7 2.5E-17 5.3E-22 116.5 10.4 115 27-144 1-115 (361)
45 TIGR02875 spore_0_A sporulatio 99.7 4E-16 8.7E-21 111.5 16.4 117 26-143 2-122 (262)
46 PRK10923 glnG nitrogen regulat 99.7 3.5E-16 7.5E-21 120.2 16.6 116 27-143 4-119 (469)
47 PRK10365 transcriptional regul 99.7 2.5E-16 5.3E-21 120.1 15.6 118 25-143 4-121 (441)
48 PRK11091 aerobic respiration c 99.7 3.8E-16 8.2E-21 126.4 17.1 117 25-143 524-643 (779)
49 PRK11361 acetoacetate metaboli 99.7 4.7E-16 1E-20 119.1 16.7 117 26-143 4-120 (457)
50 PRK09959 hybrid sensory histid 99.7 3.7E-16 8E-21 131.2 17.2 118 25-143 957-1074(1197)
51 PRK15479 transcriptional regul 99.7 1E-15 2.2E-20 105.8 16.6 117 27-144 1-117 (221)
52 PRK14084 two-component respons 99.7 6.5E-16 1.4E-20 109.3 15.8 114 27-143 1-116 (246)
53 PRK10710 DNA-binding transcrip 99.7 2.4E-15 5.2E-20 105.4 17.8 116 27-144 11-126 (240)
54 TIGR02915 PEP_resp_reg putativ 99.7 5.8E-16 1.3E-20 118.3 15.4 112 29-143 1-117 (445)
55 PRK10360 DNA-binding transcrip 99.7 1.5E-15 3.2E-20 103.5 15.9 114 27-144 2-117 (196)
56 TIGR01818 ntrC nitrogen regula 99.7 8E-16 1.7E-20 118.0 15.6 114 29-143 1-114 (463)
57 PRK10100 DNA-binding transcrip 99.7 9.6E-16 2.1E-20 106.8 14.1 116 26-145 10-127 (216)
58 PRK09390 fixJ response regulat 99.7 1.6E-15 3.5E-20 103.0 14.6 117 26-143 3-119 (202)
59 PRK11475 DNA-binding transcrip 99.7 1.3E-15 2.9E-20 105.5 13.6 106 39-145 3-115 (207)
60 PRK09581 pleD response regulat 99.7 1.1E-15 2.4E-20 116.1 13.2 116 25-142 154-271 (457)
61 PRK15411 rcsA colanic acid cap 99.7 4.9E-15 1.1E-19 102.8 15.1 117 27-145 1-123 (207)
62 PRK10403 transcriptional regul 99.7 1.3E-14 2.7E-19 99.7 16.7 118 26-144 6-125 (215)
63 PRK10651 transcriptional regul 99.7 1.3E-14 2.9E-19 99.7 16.7 119 25-144 5-125 (216)
64 PRK10610 chemotaxis regulatory 99.7 3.2E-14 6.9E-19 89.3 16.7 119 25-144 4-125 (129)
65 PRK13435 response regulator; P 99.7 1.2E-14 2.7E-19 94.9 15.0 115 25-144 4-120 (145)
66 PRK09581 pleD response regulat 99.7 1E-14 2.3E-19 110.8 16.7 115 28-143 4-120 (457)
67 PRK15369 two component system 99.7 2.4E-14 5.1E-19 97.7 16.7 118 26-144 3-122 (211)
68 PRK11697 putative two-componen 99.7 1.4E-14 3E-19 101.9 15.4 113 27-143 2-116 (238)
69 PRK13558 bacterio-opsin activa 99.7 6.1E-15 1.3E-19 117.6 15.0 116 26-142 7-124 (665)
70 PRK12555 chemotaxis-specific m 99.6 1.5E-14 3.2E-19 107.1 15.5 115 27-143 1-128 (337)
71 PRK00742 chemotaxis-specific m 99.6 6.5E-14 1.4E-18 104.3 16.1 105 26-132 3-111 (354)
72 PRK13837 two-component VirA-li 99.6 9.7E-14 2.1E-18 113.2 17.6 117 25-144 696-813 (828)
73 PRK13557 histidine kinase; Pro 99.6 1.7E-13 3.8E-18 106.1 17.2 120 25-144 414-534 (540)
74 PRK09191 two-component respons 99.6 4.6E-13 9.9E-18 95.4 15.6 114 26-143 137-252 (261)
75 COG3707 AmiR Response regulato 99.6 1.1E-13 2.3E-18 93.0 11.1 113 26-140 5-118 (194)
76 cd00156 REC Signal receiver do 99.5 5.2E-13 1.1E-17 80.6 13.2 112 30-142 1-112 (113)
77 COG2201 CheB Chemotaxis respon 99.5 8.2E-13 1.8E-17 96.8 12.6 104 26-131 1-108 (350)
78 PRK10693 response regulator of 99.5 1.2E-12 2.5E-17 95.8 12.0 88 55-143 2-90 (303)
79 PRK15029 arginine decarboxylas 99.4 9.9E-12 2.2E-16 99.6 12.9 108 27-135 1-122 (755)
80 COG3279 LytT Response regulato 99.2 4.2E-10 9.1E-15 79.9 10.8 113 27-142 2-116 (244)
81 PRK11107 hybrid sensory histid 98.8 2.4E-07 5.3E-12 76.5 14.9 113 25-142 535-649 (919)
82 PF06490 FleQ: Flagellar regul 98.7 5.7E-07 1.2E-11 56.2 10.3 107 28-142 1-107 (109)
83 cd02071 MM_CoA_mut_B12_BD meth 98.4 4.3E-05 9.3E-10 48.7 13.1 107 33-140 10-121 (122)
84 PRK02261 methylaspartate mutas 98.3 0.00024 5.2E-09 46.2 14.8 118 26-144 3-135 (137)
85 PF03709 OKR_DC_1_N: Orn/Lys/A 98.3 2.1E-05 4.6E-10 49.6 9.6 104 38-142 5-111 (115)
86 COG3706 PleD Response regulato 98.3 2.2E-06 4.8E-11 65.2 6.0 90 51-143 13-102 (435)
87 TIGR00640 acid_CoA_mut_C methy 98.2 0.00021 4.5E-09 46.2 12.8 110 33-143 13-127 (132)
88 smart00448 REC cheY-homologous 98.1 4.2E-05 9E-10 39.2 7.9 54 27-81 1-54 (55)
89 TIGR01501 MthylAspMutase methy 98.0 0.0008 1.7E-08 43.5 12.7 109 35-144 14-133 (134)
90 cd02067 B12-binding B12 bindin 97.8 0.0011 2.3E-08 41.9 11.3 94 33-128 10-109 (119)
91 cd02072 Glm_B12_BD B12 binding 97.6 0.0056 1.2E-07 39.3 12.6 103 36-140 13-127 (128)
92 PRK15399 lysine decarboxylase 97.3 0.0054 1.2E-07 49.9 11.6 98 28-128 2-105 (713)
93 COG2185 Sbm Methylmalonyl-CoA 97.3 0.017 3.6E-07 37.7 11.7 116 26-142 12-136 (143)
94 PF02310 B12-binding: B12 bind 97.3 0.011 2.5E-07 37.0 10.6 92 35-128 13-111 (121)
95 PRK15400 lysine decarboxylase 97.2 0.0069 1.5E-07 49.3 11.0 97 28-127 2-104 (714)
96 COG4999 Uncharacterized domain 97.2 0.0061 1.3E-07 38.3 8.2 110 25-139 10-121 (140)
97 cd02070 corrinoid_protein_B12- 97.1 0.023 5E-07 39.3 11.5 97 27-127 83-190 (201)
98 cd02069 methionine_synthase_B1 97.1 0.021 4.5E-07 40.0 10.9 100 27-127 89-200 (213)
99 TIGR03815 CpaE_hom_Actino heli 97.1 0.0032 6.9E-08 46.6 7.2 84 50-142 1-85 (322)
100 PRK09426 methylmalonyl-CoA mut 96.8 0.044 9.6E-07 44.9 12.5 108 35-143 595-707 (714)
101 PRK10618 phosphotransfer inter 96.8 0.027 5.8E-07 47.4 11.2 49 25-80 688-736 (894)
102 cd02068 radical_SAM_B12_BD B12 96.6 0.079 1.7E-06 33.7 9.9 105 37-143 3-111 (127)
103 TIGR02370 pyl_corrinoid methyl 96.3 0.1 2.2E-06 36.1 9.9 90 34-127 96-192 (197)
104 PRK05718 keto-hydroxyglutarate 96.0 0.27 5.8E-06 34.4 11.0 94 42-139 8-104 (212)
105 TIGR02026 BchE magnesium-proto 95.8 0.34 7.3E-06 38.2 11.7 107 35-143 21-136 (497)
106 TIGR02311 HpaI 2,4-dihydroxyhe 95.7 0.41 8.9E-06 34.3 11.2 89 53-142 16-106 (249)
107 PRK10558 alpha-dehydro-beta-de 95.4 0.52 1.1E-05 33.9 10.7 101 40-141 8-112 (256)
108 PRK00043 thiE thiamine-phospha 95.3 0.6 1.3E-05 32.2 10.5 86 55-143 110-208 (212)
109 PF01081 Aldolase: KDPG and KH 95.2 0.16 3.5E-06 35.0 7.4 92 43-139 2-97 (196)
110 cd04728 ThiG Thiazole synthase 95.2 0.51 1.1E-05 33.7 9.8 108 28-139 95-220 (248)
111 COG0512 PabA Anthranilate/para 95.0 0.22 4.7E-06 34.2 7.4 80 27-108 2-83 (191)
112 PRK08385 nicotinate-nucleotide 94.9 0.8 1.7E-05 33.4 10.5 95 28-126 156-257 (278)
113 PRK09140 2-dehydro-3-deoxy-6-p 94.7 0.95 2.1E-05 31.5 10.1 95 42-139 3-100 (206)
114 TIGR01182 eda Entner-Doudoroff 94.7 0.72 1.6E-05 32.1 9.3 91 45-139 4-97 (204)
115 PRK10128 2-keto-3-deoxy-L-rham 94.6 1.2 2.6E-05 32.3 11.1 100 41-141 8-111 (267)
116 PRK07896 nicotinate-nucleotide 94.6 0.37 8E-06 35.3 8.2 95 28-126 172-272 (289)
117 cd02065 B12-binding_like B12 b 94.4 0.71 1.5E-05 28.8 8.7 72 33-105 10-86 (125)
118 TIGR01334 modD putative molybd 94.4 0.31 6.6E-06 35.6 7.3 95 28-126 158-261 (277)
119 cd00452 KDPG_aldolase KDPG and 94.4 0.85 1.8E-05 31.2 9.3 79 43-126 90-169 (190)
120 PF01729 QRPTase_C: Quinolinat 94.4 0.43 9.3E-06 32.2 7.6 95 28-126 52-153 (169)
121 PRK06552 keto-hydroxyglutarate 94.4 1.2 2.6E-05 31.2 10.2 95 44-139 8-105 (213)
122 PRK07428 nicotinate-nucleotide 94.3 0.53 1.2E-05 34.5 8.4 95 28-126 168-269 (288)
123 COG0157 NadC Nicotinate-nucleo 94.0 0.78 1.7E-05 33.4 8.6 94 28-126 160-260 (280)
124 PRK05458 guanosine 5'-monophos 93.9 0.54 1.2E-05 35.1 7.9 66 60-126 100-166 (326)
125 PRK10669 putative cation:proto 93.9 2 4.3E-05 34.4 11.7 109 27-142 418-546 (558)
126 PRK05749 3-deoxy-D-manno-octul 93.9 2.3 4.9E-05 32.6 11.7 110 26-144 262-387 (425)
127 PRK00208 thiG thiazole synthas 93.8 1.8 3.8E-05 31.1 10.8 88 48-139 121-220 (250)
128 PRK05848 nicotinate-nucleotide 93.7 0.76 1.7E-05 33.5 8.3 96 28-127 154-256 (273)
129 TIGR01305 GMP_reduct_1 guanosi 93.7 0.75 1.6E-05 34.4 8.3 56 71-127 121-177 (343)
130 PF10087 DUF2325: Uncharacteri 93.6 0.96 2.1E-05 27.3 9.9 76 28-106 1-82 (97)
131 PRK03659 glutathione-regulated 93.5 1.5 3.2E-05 35.6 10.4 97 27-127 401-517 (601)
132 PF05690 ThiG: Thiazole biosyn 93.5 1.7 3.8E-05 30.9 9.4 94 44-139 117-220 (247)
133 PF07688 KaiA: KaiA domain; I 93.5 1.1 2.4E-05 32.2 8.4 77 28-107 2-79 (283)
134 TIGR03239 GarL 2-dehydro-3-deo 93.4 2.1 4.6E-05 30.7 11.1 83 58-141 21-105 (249)
135 PRK01130 N-acetylmannosamine-6 93.2 2 4.4E-05 30.0 11.4 86 38-126 106-200 (221)
136 PRK15320 transcriptional activ 93.2 0.52 1.1E-05 32.7 6.2 98 28-128 3-102 (251)
137 COG0800 Eda 2-keto-3-deoxy-6-p 93.1 2.1 4.6E-05 29.9 10.0 96 40-138 4-102 (211)
138 TIGR02082 metH 5-methyltetrahy 92.7 3.2 7E-05 36.4 11.6 99 28-127 734-844 (1178)
139 TIGR01302 IMP_dehydrog inosine 92.6 0.99 2.1E-05 35.2 8.0 64 59-125 226-290 (450)
140 PRK07114 keto-hydroxyglutarate 92.6 2.6 5.6E-05 29.8 9.9 94 42-139 8-108 (222)
141 PRK06843 inosine 5-monophospha 92.6 1.1 2.4E-05 34.5 8.0 63 61-126 157-220 (404)
142 PF13941 MutL: MutL protein 92.6 4.2 9E-05 32.0 11.8 109 21-130 71-187 (457)
143 PF02254 TrkA_N: TrkA-N domain 92.5 1.6 3.4E-05 26.9 10.3 93 27-127 22-115 (116)
144 TIGR01303 IMP_DH_rel_1 IMP deh 92.5 1.4 3E-05 34.7 8.6 68 57-126 224-292 (475)
145 PRK13111 trpA tryptophan synth 92.4 1.2 2.5E-05 32.2 7.6 58 85-142 75-138 (258)
146 PRK05096 guanosine 5'-monophos 92.2 1.3 2.7E-05 33.3 7.7 54 71-125 122-176 (346)
147 PRK06015 keto-hydroxyglutarate 92.2 2.6 5.7E-05 29.3 8.8 59 78-138 34-92 (201)
148 PRK05703 flhF flagellar biosyn 92.1 3.9 8.4E-05 31.8 10.6 103 26-128 251-366 (424)
149 cd06533 Glyco_transf_WecG_TagA 92.1 2.5 5.5E-05 28.4 9.1 69 26-97 46-123 (171)
150 PRK06559 nicotinate-nucleotide 91.9 2.3 5E-05 31.3 8.7 92 28-126 169-267 (290)
151 TIGR00262 trpA tryptophan synt 91.9 1.7 3.6E-05 31.3 7.9 58 85-142 73-136 (256)
152 PF04131 NanE: Putative N-acet 91.9 3 6.5E-05 28.7 9.9 85 39-127 81-172 (192)
153 PF03328 HpcH_HpaI: HpcH/HpaI 91.8 3.2 6.9E-05 29.0 10.4 84 58-142 9-106 (221)
154 PRK09490 metH B12-dependent me 91.6 3.4 7.3E-05 36.4 10.5 98 28-126 753-862 (1229)
155 cd04727 pdxS PdxS is a subunit 91.5 4.2 9.2E-05 29.7 9.7 86 53-141 116-243 (283)
156 PF00478 IMPDH: IMP dehydrogen 91.4 2 4.4E-05 32.5 8.1 67 59-127 109-176 (352)
157 PRK06774 para-aminobenzoate sy 91.4 0.61 1.3E-05 31.8 5.1 77 29-107 2-80 (191)
158 TIGR00566 trpG_papA glutamine 91.2 1.3 2.8E-05 30.3 6.5 77 29-107 2-80 (188)
159 TIGR00693 thiE thiamine-phosph 91.2 3.4 7.4E-05 28.1 9.6 69 55-126 102-178 (196)
160 PRK11359 cyclic-di-GMP phospho 91.1 3.6 7.8E-05 34.0 10.1 101 40-142 681-794 (799)
161 PRK06543 nicotinate-nucleotide 91.1 4.8 0.0001 29.5 9.9 92 28-126 161-263 (281)
162 PRK06096 molybdenum transport 91.1 2.3 5E-05 31.2 8.0 95 29-127 160-263 (284)
163 PRK03562 glutathione-regulated 90.8 4.8 0.0001 32.8 10.3 53 71-126 464-516 (621)
164 PRK14329 (dimethylallyl)adenos 90.8 4.8 0.0001 31.6 10.0 96 34-142 35-138 (467)
165 PRK13566 anthranilate synthase 90.8 1.9 4.1E-05 35.8 8.1 82 22-107 522-606 (720)
166 PRK00278 trpC indole-3-glycero 90.7 4.8 0.0001 29.0 14.6 99 36-136 146-253 (260)
167 TIGR01579 MiaB-like-C MiaB-lik 90.6 6 0.00013 30.5 10.3 94 35-141 9-106 (414)
168 cd04729 NanE N-acetylmannosami 90.5 4.4 9.6E-05 28.2 10.5 85 40-127 112-205 (219)
169 TIGR00642 mmCoA_mut_beta methy 90.5 6.1 0.00013 32.3 10.5 110 28-142 496-615 (619)
170 smart00052 EAL Putative diguan 90.4 3.6 7.7E-05 28.5 8.4 92 41-133 137-240 (241)
171 PRK06978 nicotinate-nucleotide 90.4 2.9 6.4E-05 30.8 8.0 92 28-126 178-275 (294)
172 cd01573 modD_like ModD; Quinol 90.2 3.1 6.6E-05 30.3 8.0 71 53-127 187-257 (272)
173 PF01408 GFO_IDH_MocA: Oxidore 90.1 3 6.6E-05 25.7 10.4 103 28-142 2-109 (120)
174 TIGR00343 pyridoxal 5'-phospha 90.1 6 0.00013 29.0 9.4 56 85-141 184-246 (287)
175 PF03602 Cons_hypoth95: Conser 90.0 4.1 8.8E-05 27.8 8.1 70 27-96 66-140 (183)
176 TIGR03151 enACPred_II putative 90.0 6.3 0.00014 29.2 11.1 82 42-126 101-188 (307)
177 PRK08007 para-aminobenzoate sy 90.0 0.98 2.1E-05 30.8 5.1 77 29-107 2-80 (187)
178 CHL00162 thiG thiamin biosynth 89.9 5.9 0.00013 28.6 11.5 95 44-142 131-237 (267)
179 PRK07807 inosine 5-monophospha 89.8 2.3 4.9E-05 33.6 7.4 67 58-126 227-294 (479)
180 cd04724 Tryptophan_synthase_al 89.8 3.2 6.9E-05 29.6 7.7 56 86-142 64-125 (242)
181 PRK05637 anthranilate synthase 89.7 3.3 7.3E-05 28.8 7.6 78 27-106 2-80 (208)
182 PLN02274 inosine-5'-monophosph 89.6 3.7 8.1E-05 32.6 8.6 65 60-126 250-315 (505)
183 PRK07649 para-aminobenzoate/an 89.5 0.7 1.5E-05 31.8 4.1 49 29-78 2-50 (195)
184 COG3967 DltE Short-chain dehyd 89.4 5.9 0.00013 27.9 8.5 77 26-105 5-84 (245)
185 PRK05670 anthranilate synthase 89.2 2.2 4.7E-05 29.1 6.3 78 29-107 2-80 (189)
186 PLN02335 anthranilate synthase 89.2 2.1 4.6E-05 30.1 6.4 80 26-107 18-99 (222)
187 cd00381 IMPDH IMPDH: The catal 89.2 4.7 0.0001 30.1 8.5 63 63-127 99-162 (325)
188 PRK10060 RNase II stability mo 89.1 9.2 0.0002 31.4 10.8 105 37-143 541-658 (663)
189 TIGR00736 nifR3_rel_arch TIM-b 89.0 6.4 0.00014 28.0 8.6 65 61-126 152-218 (231)
190 PRK03958 tRNA 2'-O-methylase; 89.0 5.5 0.00012 27.1 9.9 56 28-83 33-91 (176)
191 PF04131 NanE: Putative N-acet 88.9 3.9 8.5E-05 28.2 7.2 70 50-125 45-116 (192)
192 TIGR01306 GMP_reduct_2 guanosi 88.8 4.7 0.0001 30.1 8.1 56 72-128 109-165 (321)
193 PRK09016 quinolinate phosphori 88.4 3.3 7.1E-05 30.6 7.0 92 28-126 181-278 (296)
194 PF01729 QRPTase_C: Quinolinat 88.3 4.1 8.8E-05 27.5 7.0 71 71-142 49-121 (169)
195 PF03808 Glyco_tran_WecB: Glyc 88.3 5.9 0.00013 26.6 9.6 72 25-99 47-127 (172)
196 COG1908 FrhD Coenzyme F420-red 88.1 1.7 3.7E-05 27.5 4.7 56 75-130 4-62 (132)
197 PRK05567 inosine 5'-monophosph 88.1 4.7 0.0001 31.9 8.2 64 61-126 231-295 (486)
198 cd01948 EAL EAL domain. This d 87.9 4.7 0.0001 27.9 7.6 92 41-133 136-239 (240)
199 PRK06552 keto-hydroxyglutarate 87.9 7.4 0.00016 27.3 8.7 84 36-125 95-180 (213)
200 PRK06895 putative anthranilate 87.7 4 8.8E-05 27.8 6.9 77 27-107 2-80 (190)
201 cd01568 QPRTase_NadC Quinolina 87.6 2.8 6.1E-05 30.4 6.3 94 28-126 153-253 (269)
202 TIGR01319 glmL_fam conserved h 87.5 12 0.00027 29.4 11.4 109 21-130 67-183 (463)
203 PRK14974 cell division protein 87.4 11 0.00023 28.5 11.2 101 27-128 169-288 (336)
204 PF01596 Methyltransf_3: O-met 87.2 7.5 0.00016 27.1 8.0 77 27-105 71-153 (205)
205 TIGR00064 ftsY signal recognit 87.1 9.5 0.00021 27.7 10.9 102 26-128 100-226 (272)
206 TIGR00696 wecB_tagA_cpsF bacte 87.1 7.4 0.00016 26.4 9.0 71 25-98 47-125 (177)
207 PLN02591 tryptophan synthase 87.0 3.7 8.1E-05 29.5 6.5 57 85-142 65-127 (250)
208 PLN02871 UDP-sulfoquinovose:DA 86.9 13 0.00028 29.0 11.5 106 27-144 291-399 (465)
209 PF14606 Lipase_GDSL_3: GDSL-l 86.9 1.9 4.1E-05 29.4 4.7 59 48-107 31-101 (178)
210 PF04321 RmlD_sub_bind: RmlD s 86.9 2 4.3E-05 31.3 5.3 52 27-79 1-59 (286)
211 PRK14331 (dimethylallyl)adenos 86.7 8.4 0.00018 30.0 8.8 95 35-142 13-115 (437)
212 KOG2550 IMP dehydrogenase/GMP 86.3 4.6 0.0001 31.2 6.9 66 58-125 251-317 (503)
213 PTZ00314 inosine-5'-monophosph 86.2 6.3 0.00014 31.3 7.9 55 71-126 253-308 (495)
214 COG0742 N6-adenine-specific me 85.8 5.5 0.00012 27.4 6.5 56 27-82 67-125 (187)
215 TIGR00089 RNA modification enz 85.7 10 0.00023 29.3 8.9 94 35-141 12-111 (429)
216 COG3010 NanE Putative N-acetyl 85.7 10 0.00022 26.6 9.8 68 54-127 132-208 (229)
217 PRK12724 flagellar biosynthesi 85.4 16 0.00034 28.6 11.3 99 27-128 253-368 (432)
218 PRK07455 keto-hydroxyglutarate 85.3 9.6 0.00021 26.0 9.0 92 43-135 6-98 (187)
219 PF00448 SRP54: SRP54-type pro 85.0 10 0.00022 26.1 8.6 91 38-129 44-150 (196)
220 PRK08072 nicotinate-nucleotide 85.0 13 0.00028 27.2 10.2 92 28-126 160-258 (277)
221 COG0157 NadC Nicotinate-nucleo 84.9 8.2 0.00018 28.2 7.4 69 72-141 158-228 (280)
222 COG3836 HpcH 2,4-dihydroxyhept 84.8 12 0.00026 26.8 10.1 98 40-139 6-108 (255)
223 cd00564 TMP_TenI Thiamine mono 84.8 9.4 0.0002 25.5 8.7 68 55-126 101-176 (196)
224 cd00561 CobA_CobO_BtuR ATP:cor 84.7 8.3 0.00018 25.7 6.9 44 70-114 94-142 (159)
225 COG2200 Rtn c-di-GMP phosphodi 84.1 13 0.00028 26.6 10.8 103 38-141 137-251 (256)
226 TIGR03128 RuMP_HxlA 3-hexulose 84.0 9.9 0.00022 26.0 7.5 6 75-80 55-60 (206)
227 cd04723 HisA_HisF Phosphoribos 83.8 13 0.00028 26.3 8.4 67 58-126 147-216 (233)
228 PRK12727 flagellar biosynthesi 83.5 22 0.00047 28.8 9.8 87 27-113 381-473 (559)
229 PRK05986 cob(I)alamin adenolsy 83.5 7.5 0.00016 26.8 6.5 49 64-114 109-162 (191)
230 PRK08857 para-aminobenzoate sy 83.5 4.5 9.7E-05 27.7 5.5 48 29-78 2-50 (193)
231 COG0621 MiaB 2-methylthioadeni 83.4 16 0.00035 28.6 8.9 97 34-143 14-115 (437)
232 PF02581 TMP-TENI: Thiamine mo 83.4 11 0.00025 25.3 9.7 69 54-126 100-175 (180)
233 PF07652 Flavi_DEAD: Flaviviru 83.2 9.4 0.0002 25.2 6.5 84 25-108 32-135 (148)
234 CHL00101 trpG anthranilate syn 83.1 6.8 0.00015 26.7 6.2 49 29-78 2-50 (190)
235 TIGR00708 cobA cob(I)alamin ad 83.0 7.8 0.00017 26.3 6.3 44 70-114 96-144 (173)
236 COG2109 BtuR ATP:corrinoid ade 82.9 10 0.00022 26.2 6.8 53 63-116 115-172 (198)
237 PF00977 His_biosynth: Histidi 82.7 14 0.00031 26.0 9.0 69 58-127 148-219 (229)
238 COG2022 ThiG Uncharacterized e 82.5 15 0.00033 26.2 9.4 81 44-127 124-210 (262)
239 PRK04148 hypothetical protein; 82.4 4.6 0.0001 26.2 4.9 95 25-134 16-114 (134)
240 PRK11889 flhF flagellar biosyn 82.3 22 0.00047 27.8 11.3 103 26-128 269-386 (436)
241 CHL00200 trpA tryptophan synth 82.3 11 0.00025 27.3 7.4 57 85-142 78-140 (263)
242 PRK07414 cob(I)yrinic acid a,c 82.3 9.4 0.0002 26.0 6.5 44 70-114 114-162 (178)
243 COG5012 Predicted cobalamin bi 81.9 13 0.00027 26.4 7.1 87 39-127 121-212 (227)
244 PRK14333 (dimethylallyl)adenos 81.9 19 0.00041 28.2 8.9 95 34-142 18-121 (448)
245 PRK00536 speE spermidine synth 81.9 17 0.00037 26.4 8.1 23 70-96 138-160 (262)
246 PRK12723 flagellar biosynthesi 81.8 22 0.00047 27.4 12.2 103 26-128 206-321 (388)
247 PRK14098 glycogen synthase; Pr 81.7 24 0.00052 27.9 9.6 110 27-143 337-449 (489)
248 PF03060 NMO: Nitronate monoox 81.2 20 0.00044 26.8 10.6 82 42-126 128-217 (330)
249 PRK13125 trpA tryptophan synth 81.2 17 0.00037 25.9 11.4 90 37-128 116-214 (244)
250 COG0159 TrpA Tryptophan syntha 81.1 14 0.0003 26.9 7.3 50 85-134 80-135 (265)
251 PRK14723 flhF flagellar biosyn 81.0 33 0.00071 29.0 10.3 102 27-128 216-332 (767)
252 KOG4175 Tryptophan synthase al 80.9 7.3 0.00016 27.2 5.6 42 96-137 92-139 (268)
253 PF02572 CobA_CobO_BtuR: ATP:c 80.7 8.2 0.00018 26.1 5.8 45 70-115 95-144 (172)
254 PRK07003 DNA polymerase III su 80.6 6.9 0.00015 32.9 6.3 71 71-143 119-191 (830)
255 TIGR01815 TrpE-clade3 anthrani 80.6 16 0.00034 30.6 8.4 54 22-77 512-565 (717)
256 PF00218 IGPS: Indole-3-glycer 80.4 19 0.00042 26.0 10.4 87 39-127 147-237 (254)
257 PRK00811 spermidine synthase; 80.2 20 0.00044 26.1 9.9 77 27-105 101-189 (283)
258 PRK13587 1-(5-phosphoribosyl)- 80.1 19 0.0004 25.6 8.6 67 60-127 151-220 (234)
259 PF09456 RcsC: RcsC Alpha-Beta 80.0 11 0.00023 22.8 8.1 90 29-142 2-91 (92)
260 TIGR01425 SRP54_euk signal rec 79.9 27 0.00058 27.3 10.1 81 27-108 129-223 (429)
261 PRK12704 phosphodiesterase; Pr 79.7 4.2 9.1E-05 32.5 4.7 43 101-143 251-295 (520)
262 PRK06559 nicotinate-nucleotide 79.6 13 0.00028 27.4 6.9 70 72-142 167-238 (290)
263 PF10727 Rossmann-like: Rossma 79.5 14 0.00029 23.7 7.2 104 19-125 3-123 (127)
264 TIGR03471 HpnJ hopanoid biosyn 79.5 20 0.00043 28.2 8.4 96 35-136 33-134 (472)
265 PRK03692 putative UDP-N-acetyl 79.4 20 0.00044 25.6 9.3 70 25-97 104-181 (243)
266 COG2265 TrmA SAM-dependent met 79.3 28 0.00061 27.2 10.3 95 26-125 315-413 (432)
267 PLN02716 nicotinate-nucleotide 79.3 24 0.00051 26.3 9.6 96 28-126 172-288 (308)
268 PRK14326 (dimethylallyl)adenos 79.3 30 0.00066 27.6 11.4 95 34-142 25-128 (502)
269 PRK06978 nicotinate-nucleotide 79.2 8.7 0.00019 28.4 5.9 69 72-142 176-246 (294)
270 PRK06731 flhF flagellar biosyn 79.2 22 0.00048 25.9 11.6 102 27-128 104-220 (270)
271 PRK11557 putative DNA-binding 79.1 21 0.00046 25.7 9.9 84 28-114 130-217 (278)
272 PRK14330 (dimethylallyl)adenos 79.1 24 0.00051 27.5 8.6 95 35-142 13-112 (434)
273 PRK07765 para-aminobenzoate sy 79.0 14 0.00031 25.8 6.8 50 27-78 1-53 (214)
274 PRK04128 1-(5-phosphoribosyl)- 79.0 20 0.00044 25.3 7.6 65 58-126 144-209 (228)
275 PF00290 Trp_syntA: Tryptophan 78.7 13 0.00028 27.0 6.6 51 86-136 74-130 (259)
276 PRK08385 nicotinate-nucleotide 78.4 13 0.00027 27.3 6.5 53 88-142 171-223 (278)
277 cd04824 eu_ALAD_PBGS_cysteine_ 78.3 17 0.00037 27.1 7.1 49 56-107 221-271 (320)
278 PF02662 FlpD: Methyl-viologen 78.3 9.9 0.00021 24.2 5.4 49 80-128 8-59 (124)
279 PLN02889 oxo-acid-lyase/anthra 78.1 26 0.00057 30.2 9.0 86 20-107 75-170 (918)
280 PRK07455 keto-hydroxyglutarate 78.0 19 0.00042 24.6 8.1 65 55-125 111-177 (187)
281 TIGR01334 modD putative molybd 77.9 19 0.00041 26.4 7.3 54 87-142 176-229 (277)
282 PF14097 SpoVAE: Stage V sporu 77.9 19 0.00041 24.4 9.7 79 29-109 3-95 (180)
283 PRK14337 (dimethylallyl)adenos 77.8 31 0.00068 26.9 9.2 95 34-142 15-117 (446)
284 PF01380 SIS: SIS domain SIS d 77.5 14 0.00031 22.9 6.5 99 28-133 7-109 (131)
285 TIGR00875 fsa_talC_mipB fructo 77.5 22 0.00048 25.0 9.1 81 45-128 96-185 (213)
286 COG0626 MetC Cystathionine bet 77.3 31 0.00068 26.7 9.2 97 27-126 103-205 (396)
287 cd04726 KGPDC_HPS 3-Keto-L-gul 77.3 20 0.00043 24.4 12.0 85 38-126 91-184 (202)
288 PRK13143 hisH imidazole glycer 77.2 12 0.00026 25.7 6.0 45 27-78 1-45 (200)
289 TIGR00078 nadC nicotinate-nucl 77.1 24 0.00053 25.6 7.7 91 28-126 150-248 (265)
290 PRK09016 quinolinate phosphori 76.9 18 0.00039 26.8 7.0 54 87-142 196-249 (296)
291 cd01572 QPRTase Quinolinate ph 76.8 17 0.00038 26.4 6.9 54 88-142 170-223 (268)
292 PF06283 ThuA: Trehalose utili 76.8 21 0.00044 24.8 7.1 76 28-106 1-88 (217)
293 cd05014 SIS_Kpsf KpsF-like pro 76.7 15 0.00033 22.8 7.1 87 36-130 12-100 (128)
294 TIGR01574 miaB-methiolase tRNA 76.6 34 0.00073 26.7 9.1 94 35-142 12-115 (438)
295 PRK10742 putative methyltransf 76.6 26 0.00056 25.3 8.0 100 26-131 110-222 (250)
296 PRK05848 nicotinate-nucleotide 76.4 23 0.00049 25.9 7.4 55 87-142 169-223 (273)
297 TIGR03499 FlhF flagellar biosy 76.3 18 0.00038 26.4 6.9 7 72-78 273-279 (282)
298 COG4122 Predicted O-methyltran 76.2 25 0.00053 24.9 9.3 56 28-84 86-145 (219)
299 PRK06096 molybdenum transport 76.1 22 0.00048 26.2 7.2 53 88-142 178-230 (284)
300 PLN02778 3,5-epimerase/4-reduc 76.1 23 0.0005 25.9 7.5 56 22-78 5-64 (298)
301 PRK04302 triosephosphate isome 76.1 24 0.00052 24.7 13.2 83 42-126 106-200 (223)
302 PRK07107 inosine 5-monophospha 76.0 28 0.00061 27.8 8.3 55 71-126 254-310 (502)
303 PRK14328 (dimethylallyl)adenos 76.0 35 0.00076 26.6 9.3 97 34-143 13-119 (439)
304 PRK09776 putative diguanylate 75.9 40 0.00088 29.1 9.9 101 39-140 976-1088(1092)
305 cd04726 KGPDC_HPS 3-Keto-L-gul 75.8 14 0.00031 25.1 6.1 24 114-137 96-121 (202)
306 PRK14722 flhF flagellar biosyn 75.7 34 0.00074 26.3 10.3 88 28-115 169-263 (374)
307 cd06346 PBP1_ABC_ligand_bindin 75.6 28 0.00061 25.3 10.4 81 30-113 142-232 (312)
308 KOG1562 Spermidine synthase [A 75.5 25 0.00055 26.2 7.3 61 28-89 147-213 (337)
309 PRK01362 putative translaldola 75.4 26 0.00055 24.7 9.5 81 45-126 96-183 (214)
310 PRK06106 nicotinate-nucleotide 75.3 30 0.00065 25.4 9.3 92 28-126 166-264 (281)
311 PF10672 Methyltrans_SAM: S-ad 75.2 26 0.00055 25.8 7.4 52 28-79 148-203 (286)
312 PLN00141 Tic62-NAD(P)-related 75.1 26 0.00056 24.6 7.7 36 19-54 10-45 (251)
313 COG0421 SpeE Spermidine syntha 75.1 30 0.00066 25.4 8.6 76 28-105 102-188 (282)
314 PRK07764 DNA polymerase III su 74.9 19 0.00042 30.6 7.5 71 71-143 120-192 (824)
315 cd08187 BDH Butanol dehydrogen 74.8 35 0.00076 26.0 9.8 63 27-93 29-105 (382)
316 TIGR01578 MiaB-like-B MiaB-lik 74.8 37 0.00081 26.3 9.5 94 35-142 12-108 (420)
317 PRK08072 nicotinate-nucleotide 74.7 22 0.00049 26.0 7.0 69 72-141 158-228 (277)
318 PRK14958 DNA polymerase III su 74.7 13 0.00029 29.6 6.3 71 71-143 119-191 (509)
319 PRK07896 nicotinate-nucleotide 74.7 25 0.00053 26.0 7.2 68 72-141 170-239 (289)
320 COG1419 FlhF Flagellar GTP-bin 74.6 38 0.00083 26.3 8.6 101 27-128 234-347 (407)
321 COG1091 RfbD dTDP-4-dehydrorha 74.5 12 0.00026 27.4 5.6 52 27-80 1-59 (281)
322 PRK10538 malonic semialdehyde 74.5 26 0.00057 24.4 8.7 78 27-105 1-80 (248)
323 PRK05742 nicotinate-nucleotide 74.4 31 0.00068 25.3 8.2 91 28-126 162-259 (277)
324 PF00919 UPF0004: Uncharacteri 74.1 17 0.00037 22.1 6.9 69 35-116 12-85 (98)
325 cd03823 GT1_ExpE7_like This fa 74.0 30 0.00065 24.9 11.1 66 72-144 263-328 (359)
326 PRK09522 bifunctional glutamin 73.9 15 0.00032 29.6 6.4 51 27-78 2-55 (531)
327 cd01743 GATase1_Anthranilate_S 73.9 17 0.00036 24.5 5.9 48 29-77 1-48 (184)
328 PRK07428 nicotinate-nucleotide 73.8 31 0.00067 25.5 7.5 70 72-142 166-237 (288)
329 PRK13561 putative diguanylate 73.8 31 0.00068 28.1 8.4 99 38-139 535-647 (651)
330 PF01564 Spermine_synth: Sperm 73.7 25 0.00054 25.2 7.0 77 27-105 101-189 (246)
331 cd06341 PBP1_ABC_ligand_bindin 73.7 33 0.00071 25.2 10.6 74 39-115 150-230 (341)
332 PLN02522 ATP citrate (pro-S)-l 73.6 50 0.0011 27.2 13.0 113 28-144 169-315 (608)
333 cd01568 QPRTase_NadC Quinolina 73.2 33 0.00071 24.9 7.6 54 88-142 169-222 (269)
334 TIGR00007 phosphoribosylformim 73.2 29 0.00062 24.2 11.4 68 58-127 146-217 (230)
335 KOG0781 Signal recognition par 73.2 36 0.00079 27.2 8.0 74 26-100 406-499 (587)
336 PF05768 DUF836: Glutaredoxin- 73.1 15 0.00034 21.1 5.7 67 58-140 15-81 (81)
337 PRK03708 ppnK inorganic polyph 73.1 34 0.00073 25.0 10.6 87 38-144 17-111 (277)
338 KOG0026 Anthranilate synthase, 73.0 26 0.00057 23.7 7.6 90 15-106 7-99 (223)
339 PRK15484 lipopolysaccharide 1, 72.8 38 0.00083 25.6 13.5 108 27-144 225-343 (380)
340 COG4262 Predicted spermidine s 72.8 42 0.00092 26.0 8.5 77 27-105 314-405 (508)
341 PRK12726 flagellar biosynthesi 72.6 43 0.00093 26.0 10.0 102 27-128 235-351 (407)
342 PF02887 PK_C: Pyruvate kinase 72.4 8.1 0.00018 24.0 3.8 64 71-140 16-81 (117)
343 TIGR00308 TRM1 tRNA(guanine-26 72.2 42 0.00091 25.7 10.6 81 27-112 70-152 (374)
344 cd05212 NAD_bind_m-THF_DH_Cycl 72.0 23 0.0005 23.1 6.0 55 25-82 27-82 (140)
345 PRK10537 voltage-gated potassi 71.8 44 0.00096 25.8 10.0 97 26-127 240-355 (393)
346 COG0134 TrpC Indole-3-glycerol 71.7 35 0.00077 24.7 11.6 87 39-127 145-235 (254)
347 TIGR01361 DAHP_synth_Bsub phos 71.2 36 0.00079 24.6 7.4 65 59-124 148-225 (260)
348 PRK04180 pyridoxal biosynthesi 71.2 28 0.00062 25.7 6.7 57 85-142 190-253 (293)
349 COG0763 LpxB Lipid A disacchar 71.0 20 0.00044 27.5 6.2 44 62-109 77-121 (381)
350 PRK10416 signal recognition pa 71.0 41 0.00089 25.1 11.1 90 27-117 143-252 (318)
351 PRK13307 bifunctional formalde 71.0 32 0.00069 26.6 7.3 89 56-144 181-274 (391)
352 TIGR03088 stp2 sugar transfera 71.0 40 0.00087 25.0 11.5 107 26-144 229-337 (374)
353 PRK07695 transcriptional regul 70.8 31 0.00067 23.6 10.4 67 55-125 101-174 (201)
354 PRK02290 3-dehydroquinate synt 70.7 44 0.00095 25.3 9.1 67 73-142 90-158 (344)
355 PLN02775 Probable dihydrodipic 70.7 40 0.00087 24.9 14.1 104 25-132 10-138 (286)
356 PRK13306 ulaD 3-keto-L-gulonat 70.6 34 0.00073 24.0 7.7 12 74-85 58-69 (216)
357 PRK14325 (dimethylallyl)adenos 70.6 49 0.0011 25.8 10.5 96 34-142 15-118 (444)
358 cd01844 SGNH_hydrolase_like_6 70.6 22 0.00048 23.5 5.9 39 70-108 56-102 (177)
359 PLN02589 caffeoyl-CoA O-methyl 70.4 37 0.00081 24.4 10.0 54 27-80 105-165 (247)
360 PRK12323 DNA polymerase III su 70.3 17 0.00036 30.2 5.9 71 71-143 124-196 (700)
361 PRK06543 nicotinate-nucleotide 70.1 35 0.00075 25.1 7.1 69 72-142 159-234 (281)
362 cd01573 modD_like ModD; Quinol 70.0 26 0.00056 25.6 6.4 53 87-141 171-223 (272)
363 PRK00748 1-(5-phosphoribosyl)- 70.0 34 0.00075 23.8 8.4 67 59-127 148-219 (233)
364 cd08185 Fe-ADH1 Iron-containin 69.9 47 0.001 25.3 9.1 64 27-94 26-103 (380)
365 cd00331 IGPS Indole-3-glycerol 69.6 34 0.00074 23.7 13.2 79 46-126 117-199 (217)
366 TIGR01125 MiaB-like tRNA modif 69.6 51 0.0011 25.6 9.5 91 35-141 12-108 (430)
367 PRK05286 dihydroorotate dehydr 69.5 35 0.00076 25.7 7.2 58 87-144 276-341 (344)
368 PRK14340 (dimethylallyl)adenos 69.5 53 0.0011 25.8 9.2 95 34-142 18-121 (445)
369 PRK07413 hypothetical protein; 69.4 27 0.00059 26.9 6.6 48 65-114 120-172 (382)
370 cd00331 IGPS Indole-3-glycerol 69.2 35 0.00076 23.6 9.9 81 58-140 32-115 (217)
371 PRK13170 hisH imidazole glycer 69.2 26 0.00057 24.0 6.1 44 27-77 1-44 (196)
372 cd03825 GT1_wcfI_like This fam 69.1 38 0.00083 24.6 7.4 75 27-105 1-82 (365)
373 TIGR02320 PEP_mutase phosphoen 69.0 36 0.00078 25.0 7.0 85 58-142 167-254 (285)
374 PRK01033 imidazole glycerol ph 68.7 41 0.00089 24.2 8.6 68 58-126 153-224 (258)
375 TIGR00734 hisAF_rel hisA/hisF 68.6 38 0.00082 23.8 8.5 68 58-127 142-212 (221)
376 PLN02366 spermidine synthase 68.5 46 0.001 24.7 10.0 69 27-96 116-195 (308)
377 PRK03522 rumB 23S rRNA methylu 68.5 45 0.00099 24.7 9.9 87 27-120 196-286 (315)
378 PRK13146 hisH imidazole glycer 68.3 27 0.00058 24.2 6.0 44 27-77 2-47 (209)
379 TIGR00078 nadC nicotinate-nucl 68.3 43 0.00094 24.3 7.6 54 88-142 166-219 (265)
380 PRK14607 bifunctional glutamin 68.1 22 0.00047 28.6 6.1 50 28-78 1-51 (534)
381 PRK13802 bifunctional indole-3 67.9 72 0.0016 26.8 11.7 89 37-127 147-239 (695)
382 cd03804 GT1_wbaZ_like This fam 67.6 47 0.001 24.4 10.3 104 27-144 222-325 (351)
383 PF00563 EAL: EAL domain; Int 67.5 10 0.00023 26.1 3.9 84 40-125 138-228 (236)
384 COG2179 Predicted hydrolase of 67.1 27 0.00058 23.7 5.5 102 30-134 39-144 (175)
385 PRK09496 trkA potassium transp 67.1 57 0.0012 25.2 9.8 96 26-126 23-122 (453)
386 KOG1203 Predicted dehydrogenas 67.0 56 0.0012 25.5 7.9 77 26-103 79-156 (411)
387 TIGR03061 pip_yhgE_Nterm YhgE/ 66.9 34 0.00073 22.6 8.1 81 25-110 42-132 (164)
388 PLN02781 Probable caffeoyl-CoA 66.9 43 0.00092 23.7 9.4 54 27-80 94-153 (234)
389 cd00516 PRTase_typeII Phosphor 66.8 38 0.00082 24.5 6.8 69 55-125 190-264 (281)
390 PRK13398 3-deoxy-7-phosphohept 66.6 47 0.001 24.1 8.3 82 44-126 128-229 (266)
391 PRK06106 nicotinate-nucleotide 66.5 50 0.0011 24.3 7.4 54 87-142 181-235 (281)
392 PRK15482 transcriptional regul 66.3 47 0.001 24.0 10.5 84 28-114 137-224 (285)
393 TIGR02855 spore_yabG sporulati 66.1 50 0.0011 24.3 10.1 96 26-123 104-221 (283)
394 PRK05742 nicotinate-nucleotide 65.6 49 0.0011 24.3 7.1 53 88-142 178-230 (277)
395 cd08179 NADPH_BDH NADPH-depend 65.6 58 0.0013 24.8 8.5 63 27-93 24-100 (375)
396 PRK11059 regulatory protein Cs 65.6 64 0.0014 26.4 8.5 93 37-131 533-638 (640)
397 PRK14952 DNA polymerase III su 65.4 71 0.0015 26.1 8.6 71 71-143 118-190 (584)
398 COG1737 RpiR Transcriptional r 65.4 50 0.0011 24.0 10.5 84 28-114 134-219 (281)
399 PRK14949 DNA polymerase III su 65.2 40 0.00087 29.2 7.3 71 71-143 119-191 (944)
400 PRK09140 2-dehydro-3-deoxy-6-p 65.1 44 0.00095 23.2 11.7 77 44-126 98-177 (206)
401 PRK14956 DNA polymerase III su 65.1 42 0.00091 26.8 7.0 71 71-143 121-193 (484)
402 PF01959 DHQS: 3-dehydroquinat 65.0 60 0.0013 24.8 9.4 86 55-142 80-167 (354)
403 cd05013 SIS_RpiR RpiR-like pro 64.9 31 0.00066 21.4 10.5 83 28-112 15-100 (139)
404 PRK15427 colanic acid biosynth 64.6 62 0.0013 24.8 13.1 107 27-144 254-369 (406)
405 PF00117 GATase: Glutamine ami 64.6 40 0.00087 22.6 7.4 75 30-107 1-80 (192)
406 COG1303 Uncharacterized protei 64.6 40 0.00087 22.6 9.2 81 28-113 34-117 (179)
407 PRK14964 DNA polymerase III su 64.1 44 0.00096 26.7 7.1 71 71-143 116-188 (491)
408 PRK08691 DNA polymerase III su 64.0 24 0.00053 29.4 5.7 72 71-144 119-192 (709)
409 PRK14951 DNA polymerase III su 63.8 43 0.00094 27.6 7.1 71 71-143 124-196 (618)
410 PRK00994 F420-dependent methyl 63.8 50 0.0011 23.8 6.5 60 67-129 57-116 (277)
411 PRK00955 hypothetical protein; 63.6 78 0.0017 26.2 8.4 106 34-143 26-178 (620)
412 cd00956 Transaldolase_FSA Tran 63.1 49 0.0011 23.1 9.5 82 46-127 97-184 (211)
413 cd06342 PBP1_ABC_LIVBP_like Ty 63.1 56 0.0012 23.7 11.9 72 39-113 152-230 (334)
414 PRK10551 phage resistance prot 63.1 78 0.0017 25.4 10.1 98 42-140 402-511 (518)
415 PLN02476 O-methyltransferase 62.9 58 0.0013 23.9 10.2 76 28-105 145-226 (278)
416 PRK14334 (dimethylallyl)adenos 62.7 72 0.0016 24.9 8.2 93 35-140 13-112 (440)
417 PRK14327 (dimethylallyl)adenos 62.5 80 0.0017 25.4 8.4 95 34-142 78-183 (509)
418 PRK12656 fructose-6-phosphate 62.4 53 0.0011 23.3 9.3 80 45-127 100-188 (222)
419 cd06329 PBP1_SBP_like_3 Peripl 62.4 60 0.0013 23.9 11.3 76 28-106 145-234 (342)
420 PRK14960 DNA polymerase III su 62.3 48 0.001 27.7 7.1 72 71-144 118-191 (702)
421 PRK02615 thiamine-phosphate py 62.1 68 0.0015 24.4 10.5 67 55-125 246-319 (347)
422 PRK07413 hypothetical protein; 62.1 44 0.00096 25.8 6.5 45 70-115 304-355 (382)
423 PRK04457 spermidine synthase; 61.8 58 0.0013 23.5 11.2 75 26-102 90-173 (262)
424 PF13578 Methyltransf_24: Meth 61.8 23 0.0005 21.2 4.3 54 27-82 24-80 (106)
425 cd04740 DHOD_1B_like Dihydroor 61.6 46 0.001 24.3 6.5 55 87-142 220-280 (296)
426 PRK01372 ddl D-alanine--D-alan 61.5 42 0.00091 24.4 6.3 40 38-78 24-63 (304)
427 KOG3040 Predicted sugar phosph 61.3 56 0.0012 23.2 6.6 73 28-106 41-118 (262)
428 PRK08508 biotin synthase; Prov 61.3 61 0.0013 23.6 7.1 40 87-126 78-117 (279)
429 PRK11543 gutQ D-arabinose 5-ph 61.3 63 0.0014 23.8 8.2 84 28-114 44-131 (321)
430 PLN02591 tryptophan synthase 61.3 59 0.0013 23.4 11.3 99 28-128 109-218 (250)
431 PRK12653 fructose-6-phosphate 60.9 56 0.0012 23.1 9.3 80 45-127 98-186 (220)
432 PRK11337 DNA-binding transcrip 60.8 62 0.0013 23.5 10.3 84 28-114 142-229 (292)
433 cd06349 PBP1_ABC_ligand_bindin 60.7 64 0.0014 23.6 10.9 83 30-115 140-232 (340)
434 PRK14332 (dimethylallyl)adenos 60.5 81 0.0018 24.8 10.8 97 34-143 22-126 (449)
435 TIGR00959 ffh signal recogniti 60.5 81 0.0018 24.7 12.1 86 26-112 128-227 (428)
436 TIGR00735 hisF imidazoleglycer 60.3 60 0.0013 23.2 8.4 71 56-127 29-102 (254)
437 PF01180 DHO_dh: Dihydroorotat 60.2 41 0.00089 24.6 6.0 56 86-141 230-293 (295)
438 PRK00771 signal recognition pa 60.0 83 0.0018 24.7 9.5 86 27-112 124-220 (437)
439 cd03813 GT1_like_3 This family 59.7 83 0.0018 24.6 11.6 106 27-144 325-441 (475)
440 PRK14338 (dimethylallyl)adenos 59.6 85 0.0018 24.7 8.3 92 34-139 32-133 (459)
441 PF05582 Peptidase_U57: YabG p 59.4 70 0.0015 23.6 10.9 95 27-123 106-222 (287)
442 TIGR03590 PseG pseudaminic aci 59.2 66 0.0014 23.3 11.0 62 42-109 45-113 (279)
443 PF04413 Glycos_transf_N: 3-De 59.0 45 0.00097 22.7 5.7 49 86-135 37-86 (186)
444 TIGR01684 viral_ppase viral ph 59.0 72 0.0016 23.8 6.9 95 30-126 65-189 (301)
445 PRK11829 biofilm formation reg 58.9 99 0.0021 25.2 11.2 100 38-139 540-652 (660)
446 PRK07315 fructose-bisphosphate 58.3 73 0.0016 23.5 7.8 68 56-125 153-229 (293)
447 cd06348 PBP1_ABC_ligand_bindin 58.0 72 0.0016 23.4 11.7 63 38-103 153-222 (344)
448 cd02810 DHOD_DHPD_FMN Dihydroo 57.9 23 0.00051 25.7 4.4 39 87-125 230-269 (289)
449 PF02882 THF_DHG_CYH_C: Tetrah 57.8 33 0.00072 22.9 4.7 57 25-83 35-91 (160)
450 cd08176 LPO Lactadehyde:propan 57.8 82 0.0018 24.0 9.7 64 27-94 29-105 (377)
451 cd01836 FeeA_FeeB_like SGNH_hy 57.7 54 0.0012 21.8 8.2 50 58-107 52-114 (191)
452 COG0352 ThiE Thiamine monophos 57.5 64 0.0014 22.6 10.5 67 55-125 110-183 (211)
453 PRK09283 delta-aminolevulinic 57.4 74 0.0016 23.9 6.8 47 56-106 224-272 (323)
454 PLN02823 spermine synthase 57.4 82 0.0018 23.8 8.9 68 27-96 128-209 (336)
455 TIGR00678 holB DNA polymerase 57.4 52 0.0011 22.0 5.8 68 71-141 96-166 (188)
456 PF04309 G3P_antiterm: Glycero 57.4 11 0.00024 25.6 2.4 64 58-127 105-168 (175)
457 PRK05718 keto-hydroxyglutarate 57.3 64 0.0014 22.6 7.5 72 46-122 104-177 (212)
458 cd04730 NPD_like 2-Nitropropan 57.1 64 0.0014 22.5 11.8 83 42-127 94-184 (236)
459 COG0313 Predicted methyltransf 56.9 76 0.0017 23.3 8.8 82 26-110 30-117 (275)
460 PRK07994 DNA polymerase III su 56.8 59 0.0013 27.0 6.8 71 71-143 119-191 (647)
461 cd01833 XynB_like SGNH_hydrola 56.8 12 0.00026 24.1 2.5 38 70-107 39-87 (157)
462 PRK11840 bifunctional sulfur c 56.6 84 0.0018 23.7 11.3 89 48-140 195-295 (326)
463 COG2070 Dioxygenases related t 56.5 85 0.0018 23.7 9.4 82 42-125 119-210 (336)
464 PF01993 MTD: methylene-5,6,7, 56.0 62 0.0014 23.4 5.9 63 66-131 55-117 (276)
465 COG2518 Pcm Protein-L-isoaspar 55.8 50 0.0011 23.2 5.5 64 28-95 96-161 (209)
466 cd00945 Aldolase_Class_I Class 55.5 59 0.0013 21.6 8.9 41 86-126 158-199 (201)
467 PRK15128 23S rRNA m(5)C1962 me 55.3 96 0.0021 24.0 7.7 52 28-79 245-301 (396)
468 PRK12655 fructose-6-phosphate 55.1 73 0.0016 22.5 9.3 81 45-126 98-185 (220)
469 TIGR00259 thylakoid_BtpA membr 55.0 80 0.0017 23.0 10.5 83 58-142 158-252 (257)
470 COG4981 Enoyl reductase domain 54.9 86 0.0019 25.6 7.1 70 71-140 93-169 (717)
471 PRK13586 1-(5-phosphoribosyl)- 54.8 74 0.0016 22.6 8.2 68 58-127 147-217 (232)
472 PRK14339 (dimethylallyl)adenos 54.7 1E+02 0.0022 24.0 8.0 90 37-140 4-101 (420)
473 PF02684 LpxB: Lipid-A-disacch 54.5 58 0.0013 25.0 6.1 46 60-109 72-118 (373)
474 cd01748 GATase1_IGP_Synthase T 54.5 44 0.00095 22.8 5.1 42 29-77 1-42 (198)
475 PF07364 DUF1485: Protein of u 54.2 60 0.0013 24.0 6.0 72 39-110 47-142 (292)
476 COG4378 Uncharacterized protei 54.1 47 0.001 20.1 4.9 72 27-103 1-75 (103)
477 PRK10624 L-1,2-propanediol oxi 54.1 97 0.0021 23.7 8.7 63 27-93 31-106 (382)
478 cd04823 ALAD_PBGS_aspartate_ri 54.0 85 0.0018 23.6 6.6 47 57-107 222-270 (320)
479 PRK14961 DNA polymerase III su 54.0 95 0.0021 23.5 7.9 71 71-143 119-191 (363)
480 TIGR01163 rpe ribulose-phospha 53.9 68 0.0015 21.8 9.7 54 85-139 43-97 (210)
481 PRK06737 acetolactate synthase 53.9 21 0.00046 20.7 2.9 30 29-58 6-35 (76)
482 TIGR01855 IMP_synth_hisH imida 53.8 49 0.0011 22.6 5.2 42 29-77 1-42 (196)
483 cd01080 NAD_bind_m-THF_DH_Cycl 53.7 66 0.0014 21.6 6.8 57 24-83 42-99 (168)
484 PTZ00142 6-phosphogluconate de 53.7 1.1E+02 0.0024 24.3 10.7 67 26-96 24-90 (470)
485 PF00497 SBP_bac_3: Bacterial 53.4 65 0.0014 21.5 7.1 52 25-79 109-160 (225)
486 PRK13397 3-deoxy-7-phosphohept 53.3 84 0.0018 22.7 7.6 65 61-126 140-217 (250)
487 PF02602 HEM4: Uroporphyrinoge 53.1 60 0.0013 22.4 5.7 101 26-136 117-230 (231)
488 PRK09922 UDP-D-galactose:(gluc 53.0 93 0.002 23.1 13.1 108 26-144 210-323 (359)
489 PRK14010 potassium-transportin 52.9 41 0.0009 28.0 5.4 57 82-140 442-500 (673)
490 PF13659 Methyltransf_26: Meth 52.8 49 0.0011 19.9 5.5 56 26-82 23-81 (117)
491 PRK13125 trpA tryptophan synth 52.8 81 0.0018 22.4 7.2 52 88-140 64-123 (244)
492 cd04731 HisF The cyclase subun 52.7 79 0.0017 22.3 8.8 69 56-126 26-98 (243)
493 TIGR02085 meth_trns_rumB 23S r 52.4 1E+02 0.0022 23.5 10.5 87 27-120 256-346 (374)
494 cd01825 SGNH_hydrolase_peri1 S 52.4 65 0.0014 21.2 5.7 39 70-108 55-105 (189)
495 PLN02316 synthase/transferase 52.3 1.7E+02 0.0037 26.0 11.8 111 27-143 870-996 (1036)
496 PRK14114 1-(5-phosphoribosyl)- 52.3 85 0.0018 22.4 8.2 68 58-126 145-221 (241)
497 KOG4300 Predicted methyltransf 52.2 84 0.0018 22.4 7.6 84 22-107 95-183 (252)
498 PRK14089 ipid-A-disaccharide s 52.2 1E+02 0.0022 23.4 7.3 38 70-109 75-112 (347)
499 PRK12826 3-ketoacyl-(acyl-carr 51.9 77 0.0017 21.8 9.8 79 26-105 6-89 (251)
500 PLN02898 HMP-P kinase/thiamin- 51.9 1.2E+02 0.0026 24.1 9.7 83 55-141 396-493 (502)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.93 E-value=8.1e-25 Score=153.37 Aligned_cols=117 Identities=30% Similarity=0.520 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVESKIVGV 105 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ii~l 105 (145)
++||++||++.....+...|+..||.+..+.++++++..+.. . ||+||+|+++|+++|+++++.+|+. ....|||++
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~L 78 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-Q-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVL 78 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-C-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEE
Confidence 479999999999999999999999999999999999999987 6 9999999999999999999999964 567889999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
|+..+......+++.|||+|++|||++.+|.++++.++++
T Consensus 79 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 79 TARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred ECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999998863
No 2
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.90 E-value=4.2e-22 Score=124.85 Aligned_cols=111 Identities=30% Similarity=0.540 Sum_probs=106.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCC-eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~-~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
|+|+|+++..+..++.+|+..|+ .+..+++..+++..+.. ..||++++|+.+++.+|.++++.|++..+.+|++++++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~ 79 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK-HPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTD 79 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-STESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEES
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc-cCceEEEEEeeeccccccccccccccccccccEEEecC
Confidence 78999999999999999999999 88899999999999988 67999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhcccEEeeCCCCHHHHHHHHH
Q 045936 108 RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~ 140 (145)
..+......+++.|+++|+.||++.++|..+|+
T Consensus 80 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 80 EDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp STSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999999999999999999999999875
No 3
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.89 E-value=2.6e-22 Score=151.14 Aligned_cols=116 Identities=28% Similarity=0.489 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHH--hcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 27 YFALVVDDDPMIRRIHSMILK--SVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~--~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
++|||+||.+..++.|+.++. ..|+.++ +++++++|++.+.. .+||++|.|++||.++|+++++.+++..|.+.+|
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-~~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~I 80 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-TQPDIVITDINMPGMDGLDLIKAIKEQSPDTEFI 80 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHhCCCceEE
Confidence 689999999999999999995 4588866 99999999999998 7899999999999999999999999999999999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++|+..+-+.+..|+..|+.+||.||++.++|..++.++.
T Consensus 81 ILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~ 120 (475)
T COG4753 81 ILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKII 120 (475)
T ss_pred EEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875
No 4
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.88 E-value=2.1e-21 Score=146.34 Aligned_cols=118 Identities=26% Similarity=0.440 Sum_probs=113.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..+||++||++..+..+...|...||.+..+.++++++..+... .+|+|++|..||+++|+++++.+++..|.+|||++
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 45799999999999999999999999999999999999999984 79999999999999999999999999999999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|++.+-.....|++.||.+|+.||+++++|...+++.++
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~ 121 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALE 121 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
No 5
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.88 E-value=1.8e-21 Score=131.78 Aligned_cols=116 Identities=24% Similarity=0.394 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSV-GFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++|||+||++...+.-+.++++. ||.++ .+.+.++|...+.. ..||+||+|.-||+.+|++++..+++.+..+-||+
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~ 79 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-FKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIV 79 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh-hCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999876 68855 89999999999987 57899999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+..+.+.+..+++.|+.|||.||+..++|..+|.+..
T Consensus 80 iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 80 ITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred EeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997764
No 6
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.87 E-value=1.3e-20 Score=130.94 Aligned_cols=118 Identities=31% Similarity=0.422 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-CeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG-FKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g-~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++|+++||++..+..++..|...+ +.++ .+.++++++..+.. ..||++++|+.||+++|+++++.|++..|.++|++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvv 79 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-LKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVV 79 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh-cCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEE
Confidence 369999999999999999998776 7765 78889999999776 68999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
+|...++.....+++.|+++|+.|..+++++..+++.+..|
T Consensus 80 lt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 80 LTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred EeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999998754
No 7
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.85 E-value=2.6e-20 Score=124.03 Aligned_cols=118 Identities=21% Similarity=0.299 Sum_probs=110.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..-|.|+||+...+..+.-+|...||.+.+++++++.+..... ..|.++|+|..||+++|.++...|.+..+..|||++
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~-~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfi 82 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL-DRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFL 82 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC-CCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEE
Confidence 3468999999999999999999999999999999999998654 579999999999999999999999999999999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+..+-.....++..||-|||.||++...|..++++.++
T Consensus 83 TGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 83 TGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred eCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987753
No 8
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-19 Score=130.99 Aligned_cols=118 Identities=28% Similarity=0.474 Sum_probs=108.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCC---CC
Q 045936 24 NRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKV---ES 100 (145)
Q Consensus 24 ~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~---~~ 100 (145)
...++|+++||.+..+..+..+|+..||.+..+.+++++++.... .++|++++|.+||+++|.+++.+|+...| .+
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~-~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-EPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc-cCCceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 346789999999999999999999999999999999999999887 57999999999999999999999999544 57
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
|++++|+..+.+....++..|+++|+.||+++.+|..++...
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~ 132 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSH 132 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999988544
No 9
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.83 E-value=8e-19 Score=122.99 Aligned_cols=117 Identities=18% Similarity=0.291 Sum_probs=107.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV-GFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~-g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
+.+|+++||++..+..+...|... |+. +..+.++.+++..+.. ..||++++|+.+|+.+|+++++.+++..+.++|+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~ii 82 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-FKPGLILLDNYLPDGRGINLLHELVQAHYPGDVV 82 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 468999999999999999999864 775 6689999999999987 5799999999999999999999999877778999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++|+..+......+++.|+++|+.||++.++|..+++++.
T Consensus 83 vls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 83 FTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred EEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 10
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.82 E-value=2e-18 Score=120.07 Aligned_cols=117 Identities=26% Similarity=0.417 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|++++|++.....+...|...|+.+..+.+.++++..+.. ..||++++|..+++.+|+++++.+++..+.+|+++++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~ls 79 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE-HLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLT 79 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 479999999999999999999999999999999999998876 5799999999999999999999999887889999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|...++.+++
T Consensus 80 ~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred cCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 99999989999999999999999999999999988764
No 11
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.81 E-value=3.5e-18 Score=119.11 Aligned_cols=117 Identities=21% Similarity=0.370 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|+++++++..+..+...|...|+.+..+.++.+++..+.. ..||++++|+.+++.+|+++++.+++..+.+|+++++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~ls 79 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-GDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLT 79 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 479999999999999999999999998899999999988876 5799999999999999999999999887889999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
...+......+++.|+++|+.||++.++|..+++.+++
T Consensus 80 ~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 80 ALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred cCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987764
No 12
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.80 E-value=6e-18 Score=117.72 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=107.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC-e-EEEecCHHHHHHHHhcCCCccEEEEeCCCCC---CCHHHHHHHHHhhCCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF-K-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPV---MDGIEATKAMRAMKVES 100 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~-~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~---~~g~~~~~~l~~~~~~~ 100 (145)
+++|+++||++..+..+...|...++ . +..+.++++++..+.. ..||++++|+.+++ .+|.++++.+++..|.+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~ 81 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-LDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSL 81 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCC
Confidence 46899999999999999999987664 4 5578999999998876 57999999999998 48999999999888899
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
|||+++...+......+++.|+++|+.||.++++|..+++.+..|
T Consensus 82 ~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred cEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999887653
No 13
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.80 E-value=9.7e-18 Score=117.81 Aligned_cols=118 Identities=26% Similarity=0.460 Sum_probs=109.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..+|+++++++.....+...|...||.+..+.++++++..+.. ..||++++|..+++.+|+++++.+++..+.+|++++
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~l 83 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-ESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIML 83 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 4589999999999999999999999999999999999998876 579999999999999999999999988788999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++..+......++..|+++|+.||++.++|...++.+++
T Consensus 84 s~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 84 TAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred ECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 999998888899999999999999999999999988764
No 14
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.80 E-value=1.4e-17 Score=106.74 Aligned_cols=118 Identities=33% Similarity=0.555 Sum_probs=103.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHH-HHHHHHhcCC-CccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGK-EAVDLFRTGA-KFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~-~~l~~l~~~~-~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
...+||++||++..+..+...|...|+.+..+.++. +++..++. . .||++++|.+||+++|+++++.+++..+..|+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~-~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pv 82 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRE-LPQPDLILLDINMPGMDGIELLRRLRARGPNIPV 82 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHh-CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCE
Confidence 356899999999999999999999999999999995 99999987 5 49999999999999999999999998667777
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHH-HHHHHHHHh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAK-IVPLLEELQ 143 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~-l~~~l~~~~ 143 (145)
+++|+.........++..|+++|+.||+...+ +...+++.+
T Consensus 83 v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 83 ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHH
Confidence 77888887776677789999999999977777 777776554
No 15
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.80 E-value=1e-17 Score=116.00 Aligned_cols=117 Identities=21% Similarity=0.407 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|++++|++..+..+...|...|+.+..+.+..+++..+.. ..||++++|..+++.+|+++++.++...+..|+++++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~ls 79 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES-GHYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLILT 79 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 479999999999999999999999998899999999998876 5799999999999999999999999887889999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
...+......++..|+++|+.||++.+++...++.+.+
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 80 ARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 99998889999999999999999999999999887653
No 16
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.80 E-value=1.1e-17 Score=115.76 Aligned_cols=117 Identities=24% Similarity=0.392 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|++++|++.....+...|...|+.+..+.+..+++..+.. ..||++++|..+++.+|.++++.+++..+.+|+++++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt 79 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-APYDAVILDLTLPGMDGRDILREWREKGQREPVLILT 79 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 479999999999999999999889998889999999998876 5799999999999999999999999888889999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
...+......++..|+++|+.||++.++|..+++.+++
T Consensus 80 ~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 80 ARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred CCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 99998888999999999999999999999999887653
No 17
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.80 E-value=1.4e-17 Score=115.84 Aligned_cols=116 Identities=24% Similarity=0.365 Sum_probs=106.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|+++||++..+..+...|...|+.+..+.+..+++..+.. ..||++++|+.+++.+|.++++.+++. +..|+++++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~-~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIEFIRDLRQW-SAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcC-CCCCEEEEE
Confidence 479999999999999999999999999899999999988876 579999999999999999999999874 578999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|...++.+++
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99888889999999999999999999999999987654
No 18
>PRK11173 two-component response regulator; Provisional
Probab=99.79 E-value=1.3e-17 Score=117.09 Aligned_cols=116 Identities=21% Similarity=0.376 Sum_probs=106.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|++++|++.....+...|+..|+.+..+.++.+++..+.. ..||++++|+.+++.+|+++++.+++. +..|+++++
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~-~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-NDINLVIMDINLPGKNGLLLARELREQ-ANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEcCCCCCCCHHHHHHHHhcC-CCCCEEEEE
Confidence 479999999999999999999999999999999999999887 579999999999999999999999875 578999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|...++.+++
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 98888888889999999999999999999998887664
No 19
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.79 E-value=3.6e-18 Score=109.95 Aligned_cols=114 Identities=25% Similarity=0.269 Sum_probs=108.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
+.||+||+..+...|...+++.||.+..+++.++++..++. ..|.-.++|+.+.+.+|+.+++.|++..+++.++++|+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art-~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTG 89 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-APPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTG 89 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc-CCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEec
Confidence 68999999999999999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 108 RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+.+-.....+...|+.+||.||-+.+.+..++.+-
T Consensus 90 y~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 90 YASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred chHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 99999999999999999999999999999887543
No 20
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.79 E-value=1.8e-17 Score=115.62 Aligned_cols=117 Identities=25% Similarity=0.369 Sum_probs=107.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~ii~ 104 (145)
.+|+++||++.....+...|...|+.+..+.+.++++..+.. ..||++++|..+++.+|.++++.+++.. +.+|+++
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ 81 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 81 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEE
Confidence 579999999999999999999889999899999999998876 5799999999999999999999998753 6789999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......++..|+++|+.||++.++|...++.+++
T Consensus 82 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 82 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 9999988889999999999999999999999999987764
No 21
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.79 E-value=2.2e-17 Score=114.73 Aligned_cols=117 Identities=26% Similarity=0.388 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|++++|++.....+...|...|+.+..+.+..+++..+.. ..||++++|+.+++.+|+++++.+++..+.+|+++++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls 82 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-QPPDLVILDVGLPDISGFELCRQLLAFHPALPVIFLT 82 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 579999999999999999999889998889999999998876 5799999999999999999999999987889999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|..+++.+++
T Consensus 83 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 83 ARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred cCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 98888888889999999999999999999999987654
No 22
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.79 E-value=2.2e-17 Score=115.05 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=106.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEEE
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV--MDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~--~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+|++++|++..+..+...|...||.+..+.+.++++..+.. ..||++++|+.+++ .+|.++++.++...+..|++++
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~l 80 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-RLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFL 80 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999889998888999999998876 57999999999997 4899999999988788999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++..+......++..|+++|+.||++.+++..+++.+++
T Consensus 81 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 81 TARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred ECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 999998889999999999999999999999999987764
No 23
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.79 E-value=1.2e-17 Score=125.35 Aligned_cols=119 Identities=28% Similarity=0.397 Sum_probs=111.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~i 102 (145)
...+||++||+...+..++..|...||.+..++++.+|+..+.+ .+||+||+|+.||.++|+++++.+|+.. ..+|+
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipi 209 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPI 209 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHhcccccccccE
Confidence 45799999999999999999999999999999999999999987 5899999999999999999999999864 46899
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|++++..+......+++.|++||+.||++..++..++++.++
T Consensus 210 i~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~ 251 (435)
T COG3706 210 ILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLR 251 (435)
T ss_pred EEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888764
No 24
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.79 E-value=2.5e-17 Score=114.27 Aligned_cols=116 Identities=26% Similarity=0.450 Sum_probs=106.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|+++++++.....+...|...||.+..+.++++++..+.. ..||++++|..+++.+|.++++.+++. +..|+++++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~-~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-QHVDLILLDINLPGEDGLMLTRELRSR-STVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCCCEEEEE
Confidence 579999999999999999999999999999999999998876 579999999999999999999999875 578999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|...++.+++
T Consensus 81 ~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 99888888899999999999999999999998877653
No 25
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.78 E-value=2.6e-17 Score=112.81 Aligned_cols=117 Identities=23% Similarity=0.327 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
++|+++++++.....+...|+..|+.+. .+.+.++++..+.. ..||++++|..+++.+|.++++.++...+..|++++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 79 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV 79 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-cCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 4799999999999999999988899876 78999999998886 579999999999999999999999998888899999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++..+......++..|+++|+.||++.++|..+++.+++
T Consensus 80 s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 80 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred eCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 998888889999999999999999999999999988764
No 26
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.78 E-value=3.1e-17 Score=113.69 Aligned_cols=117 Identities=26% Similarity=0.432 Sum_probs=107.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ii~ 104 (145)
.+|++++|++..+..+...|...|+.+..+.+.++++..+.. ..||++++|..+++.+|+++++.++.. .+..|+++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 81 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-RGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIM 81 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-cCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEE
Confidence 579999999999999999999889998889999999998876 579999999999999999999999875 35789999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......++..|+++|+.||++.++|...++.+++
T Consensus 82 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 82 LTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred EecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 9999988888999999999999999999999999988764
No 27
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.78 E-value=2.1e-17 Score=135.57 Aligned_cols=118 Identities=31% Similarity=0.575 Sum_probs=111.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
...+||++||++..+..+...|+..||.+..+.++++++..+.. ..||+||+|.+||+++|+++++.+++..+.+|||+
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~-~~~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII~ 878 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-NHIDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVIG 878 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 45789999999999999999999999999999999999999987 67999999999999999999999999888899999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+....+....+++.|+++|+.||++.++|...+.+..
T Consensus 879 lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 879 VTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998764
No 28
>PLN03029 type-a response regulator protein; Provisional
Probab=99.78 E-value=3.9e-17 Score=114.36 Aligned_cols=118 Identities=19% Similarity=0.385 Sum_probs=104.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcC-------------------CCccEEEEeCCCCCCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG-------------------AKFHIVFIDMEMPVMD 85 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~-------------------~~~dlil~d~~~~~~~ 85 (145)
..++||+++|++..+..+...|+..||.+..+.++.+++..+... ..+|+||+|+.|++++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 567999999999999999999999999999999999999987531 1367999999999999
Q ss_pred HHHHHHHHHhhC--CCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 86 GIEATKAMRAMK--VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 86 g~~~~~~l~~~~--~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
|+++++.+++.. +.+|+|++++.........+++.|+++|+.||++..+|...+..+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~ 145 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHM 145 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHH
Confidence 999999999863 578999999999999999999999999999999999997765443
No 29
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.78 E-value=1.7e-17 Score=135.97 Aligned_cols=120 Identities=18% Similarity=0.320 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.+.+|+++||++..+..+...|...||.+..+.++.+++..+....+||+||+|+.||+++|+++++.+++..+.+|+++
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~ 759 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIG 759 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 45689999999999999999999999999999999999998865356899999999999999999999999888999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++.........++..|+++|+.||++.++|...++++++
T Consensus 760 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred EeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988753
No 30
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.77 E-value=6.9e-17 Score=113.19 Aligned_cols=118 Identities=27% Similarity=0.441 Sum_probs=107.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
..++|++++|++.....+...|...|+.+..+.+..+++..+.. ..||++++|+.+++.+|+++++.++.. +.+|+++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~-~~~~ii~ 82 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-EQPDLVILDVMMPKLDGYGVCQEIRKE-SDVPIIM 82 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCcEEE
Confidence 35689999999999999999999889998888999999998876 579999999999999999999999875 6899999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......++..|+++|+.||++.++|..+++.+++
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 9999888888899999999999999999999999987653
No 31
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.77 E-value=4.7e-17 Score=113.51 Aligned_cols=114 Identities=28% Similarity=0.497 Sum_probs=104.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
+|++++|++..+..+...|...|+.+..+.+.++++..+.. .||++++|+.+++.+|.++++.++...+ .|+++++.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~d~vl~d~~~~~~~g~~~~~~l~~~~~-~~ii~lt~ 79 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKNGIDTLKELRQTHQ-TPVIMLTA 79 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc--CCCEEEEeCCCCCCcHHHHHHHHHhcCC-CcEEEEEC
Confidence 79999999999999999999889998899999999998753 5999999999999999999999998776 89999999
Q ss_pred CCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 108 RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
..+......+++.|+++|+.||++.++|..+++.+++
T Consensus 80 ~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 80 RGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred CCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 8888888899999999999999999999999988764
No 32
>PRK09483 response regulator; Provisional
Probab=99.77 E-value=5.6e-17 Score=112.17 Aligned_cols=118 Identities=29% Similarity=0.401 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSV-GFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++|+++|+++..+..+...|... |+.+. .+++.++++..+.. ..||++++|+.+++.+|.++++.+++..+.+|+++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-NAVDVVLMDMNMPGIGGLEATRKILRYTPDVKIIM 80 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEEE
Confidence 47999999999999999999874 78865 78999999998887 57999999999999999999999998888999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
++...+......++..|+++|+.||++.+++..+++.+.++
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 81 LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 99999998889999999999999999999999999887653
No 33
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.77 E-value=1.7e-17 Score=133.67 Aligned_cols=120 Identities=32% Similarity=0.566 Sum_probs=111.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVESKIV 103 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ii 103 (145)
++.+||++||++..+......|+.+|..+..+.++.+|+..+.....||+||+|++||.+||++..+.||+. ..+.|||
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIv 744 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPIV 744 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCCCcccEEEEEcCCcccchHHHHHHHHHhhcCCCCEE
Confidence 467899999999999999999999999999888999999999854689999999999999999999999985 4689999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++|+..+++...++++.|.|+|+.||++.+.+...+++.+.
T Consensus 745 AlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 745 ALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
No 34
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.77 E-value=6.1e-17 Score=111.74 Aligned_cols=115 Identities=22% Similarity=0.416 Sum_probs=106.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
|+++++++..+..+...|...|+.+..+.+..+++..+.. ..||++++|+.+++.+|.++++.+++..+.+|+++++..
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~~ 79 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-DDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTAR 79 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEcC
Confidence 5899999999999999999889988899999999998876 579999999999999999999999988888999999999
Q ss_pred CChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 109 NSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.+......++..|+++|+.||++.+++...++.+++
T Consensus 80 ~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 80 DSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred CCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999987654
No 35
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.77 E-value=6.7e-17 Score=114.16 Aligned_cols=116 Identities=16% Similarity=0.311 Sum_probs=103.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCeEE-EecCHHHHHHHHhc-CCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSV-GFKVE-VAENGKEAVDLFRT-GAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~l~~l~~-~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
++|+++||++..+..+...|... |+.+. .++++.+++..+.. ...||++|+|+.+|+.+|+++++.+++..+.+|++
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 57999999999999999999764 67644 78899999888752 24699999999999999999999999988899999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
++++..+......++..|+++|+.||++.++|..++++.
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 36
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.77 E-value=9.4e-17 Score=111.35 Aligned_cols=116 Identities=16% Similarity=0.391 Sum_probs=106.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|+++++++.....+...|...|+.+..+.+.++++..+.. ..||++++|..+++.+|.++++.+++. +..|+++++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~-~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-DDYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEECCCCCCCHHHHHHHHHcC-CCCCEEEEE
Confidence 479999999999999999999899988899999999998876 579999999999999999999999875 468999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......++..|+++|+.||++.+++...++..++
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 99898899999999999999999999999999987654
No 37
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.76 E-value=4.7e-17 Score=133.22 Aligned_cols=118 Identities=28% Similarity=0.495 Sum_probs=110.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~i 102 (145)
..++||++||++..+..+...|+..|+.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.|++. .+.+|+
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~-~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ-RPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 45789999999999999999999999999999999999999987 679999999999999999999999974 457999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+++|+..+......+++.|+++|+.||++.++|...+++..
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 785 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYK 785 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998765
No 38
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.76 E-value=1e-16 Score=112.73 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=104.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
+|++++|++.....+...|...|+.+..+.++.+++..+.. ..||++++|+.+++.+|+++++.+++. ...|++++++
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-~~~dlvild~~l~~~~g~~~~~~ir~~-~~~pii~l~~ 80 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-EQPDLVLLDIMLPGKDGMTICRDLRPK-WQGPIVLLTS 80 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCCEEEEEC
Confidence 79999999999999999999999999889999999999886 579999999999999999999999984 3578999998
Q ss_pred CCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 108 RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
..+......++..|+++|+.||++..+|..+++..++
T Consensus 81 ~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 81 LDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 8888888889999999999999999999999987654
No 39
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.76 E-value=9.5e-17 Score=113.17 Aligned_cols=115 Identities=18% Similarity=0.347 Sum_probs=103.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
+|++++|++.....+...|...||.+..+.++++++..+.. ..||++++|+.+++.+|+++++.+++. +.+|++++++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~l~~~~g~~l~~~i~~~-~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-ETVDVVVVDLNLGREDGLEIVRSLATK-SDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCcEEEEEC
Confidence 79999999999999999999999999999999999998876 579999999999999999999999875 4689999988
Q ss_pred CC-ChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 108 RN-SETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 108 ~~-~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.. +......+++.|+++|+.||++.++|..+++.+++
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 54 55667789999999999999999999999987664
No 40
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.76 E-value=9e-17 Score=131.68 Aligned_cols=117 Identities=33% Similarity=0.491 Sum_probs=108.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh----CCCCc
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM----KVESK 101 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~----~~~~~ 101 (145)
+++||++||++..+..+...|...|+.+..+.++++++..+.. ..||+|++|+.||+++|+++++.+++. .+.+|
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~p 768 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ-HRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDCM 768 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCCc
Confidence 4689999999999999999999999999999999999999987 679999999999999999999999874 36789
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
|+++|+..+......++..|+++|+.||++.++|...+++..
T Consensus 769 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 769 IVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred EEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987654
No 41
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.75 E-value=1.1e-16 Score=131.87 Aligned_cols=118 Identities=22% Similarity=0.446 Sum_probs=110.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCC---Cc
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVE---SK 101 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~---~~ 101 (145)
...+||++||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.+++..+. +|
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~p 779 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ-HAFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVK 779 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHhCccccCCCe
Confidence 34589999999999999999999999999999999999999987 679999999999999999999999987654 89
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
|+++|+....+....++..|+++|+.||++.++|...+++++
T Consensus 780 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 821 (968)
T TIGR02956 780 FIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVIL 821 (968)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998875
No 42
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.75 E-value=3e-16 Score=107.69 Aligned_cols=118 Identities=18% Similarity=0.314 Sum_probs=106.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV-GFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
..+|+++++++.....+...+... ++.+. .+.+..+++..+.. ..||++++|..+++.+|.++++.++...+.+|++
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~ii 81 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT-RPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVL 81 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 457999999999999999999876 57765 67899999988876 5799999999999999999999999888889999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++++..+......++..|+++|+.||++.++|..+++.+++
T Consensus 82 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 82 FLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 99999888888899999999999999999999999988764
No 43
>PRK15115 response regulator GlrR; Provisional
Probab=99.74 E-value=1.3e-16 Score=121.73 Aligned_cols=117 Identities=26% Similarity=0.416 Sum_probs=109.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..+|+++||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|..+++.+|+++++.++...+.+|+|++
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~-~~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIvl 83 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR-EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIIL 83 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 4689999999999999999999999999999999999999886 679999999999999999999999998889999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++..+......++..|+.+|+.||++.++|...++..+
T Consensus 84 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~ 121 (444)
T PRK15115 84 TAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDAL 121 (444)
T ss_pred ECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHH
Confidence 99988888899999999999999999999999988765
No 44
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.74 E-value=2.5e-17 Score=116.53 Aligned_cols=115 Identities=29% Similarity=0.421 Sum_probs=103.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|+|+||+..+...+..+|++.|+.+..|+...+++..+.. ..||++++|+.||+++|+++.++++...+.+|||++|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~-~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIs 79 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-FKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFIS 79 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh-cCCCEEEEEeecCCccHHHHHHHHHHhhccCcEEEEe
Confidence 379999999999999999999999888899999999999998 6899999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++... ....+...+++|+.||++++.|-++|.+..+
T Consensus 80 sh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 80 SHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred cchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 98654 4455666679999999999999999988764
No 45
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.74 E-value=4e-16 Score=111.46 Aligned_cols=117 Identities=20% Similarity=0.370 Sum_probs=104.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCC--Cc
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV-GFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVE--SK 101 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~--~~ 101 (145)
+.+|+++||++.....+...|... ++.+. .+.++.+++..+.. ..||++++|+.||+.+|+++++.+++..+. .|
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~~ 80 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-QQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPR 80 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhccccCCe
Confidence 468999999999999999999764 45544 78999999999887 579999999999999999999999987654 78
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++++++..+......++..|+++|+.||++.++|...++++.
T Consensus 81 iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~ 122 (262)
T TIGR02875 81 VIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLA 122 (262)
T ss_pred EEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 999999989888899999999999999999999999998765
No 46
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.73 E-value=3.5e-16 Score=120.25 Aligned_cols=116 Identities=24% Similarity=0.335 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|++++|++..+..+...|...||.+..+.++++++..+.. ..||++|+|..+++.+|+++++.++...+.+|+++++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-~~~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvlt 82 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-KTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMT 82 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEEE
Confidence 589999999999999999999999999999999999999987 5799999999999999999999999888889999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+..+......++..|+++|+.||++.+++...+++.+
T Consensus 83 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 119 (469)
T PRK10923 83 AHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 (469)
T ss_pred CCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHH
Confidence 9999888999999999999999999999999887664
No 47
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.73 E-value=2.5e-16 Score=120.09 Aligned_cols=118 Identities=27% Similarity=0.381 Sum_probs=109.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.+++|+++||++..+..+...|...|+.+..+.++.+++..+.. ..||+|++|..+++.+|+++++.++...+..|+++
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi~ 82 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLI 82 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 35789999999999999999999999999999999999998886 57999999999999999999999999888999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+..+......++..|+.+|+.||++.++|...+++.+
T Consensus 83 lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l 121 (441)
T PRK10365 83 MTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 (441)
T ss_pred EECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHH
Confidence 999988888999999999999999999999999887654
No 48
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.73 E-value=3.8e-16 Score=126.36 Aligned_cols=117 Identities=23% Similarity=0.514 Sum_probs=104.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CC-Cc
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VE-SK 101 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~-~~ 101 (145)
.+.+||++||++..+..+...|+..||.+..++++++++..+.. ..||+|++|+.||+++|+++++.|++.. +. +|
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ 602 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP-DEYDLVLLDIQLPDMTGLDIARELRERYPREDLPP 602 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-CCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCc
Confidence 45789999999999999999999999999999999999999986 6799999999999999999999999875 44 47
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++++++.... ....++..|+++|+.||++.++|...+++++
T Consensus 603 ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 643 (779)
T PRK11091 603 LVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFW 643 (779)
T ss_pred EEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHh
Confidence 8888876654 4567899999999999999999999998875
No 49
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.73 E-value=4.7e-16 Score=119.09 Aligned_cols=117 Identities=26% Similarity=0.417 Sum_probs=108.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..+|++++|++..+..+...|...||.+..+.+.++++..+.. ..||++++|..+++.+|+++++.++...+.+|++++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlillD~~~p~~~g~~ll~~i~~~~~~~pvI~l 82 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD-IHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILM 82 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 4479999999999999999999999999999999999999887 579999999999999999999999988888999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++..+......++..|+++|+.||++.+++...++..+
T Consensus 83 t~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l 120 (457)
T PRK11361 83 TAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL 120 (457)
T ss_pred eCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhc
Confidence 99999889999999999999999999999999887654
No 50
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.72 E-value=3.7e-16 Score=131.19 Aligned_cols=118 Identities=30% Similarity=0.516 Sum_probs=110.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
...+||++||++..+..+...|+..|+.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.++...+.+|+++
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~ 1035 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM-QHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWG 1035 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 45689999999999999999999999999999999999999987 67999999999999999999999999888899999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+..+......+++.|+++|+.||++.++|...++++.
T Consensus 1036 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 1074 (1197)
T PRK09959 1036 LTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLH 1074 (1197)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999887653
No 51
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.72 E-value=1e-15 Score=105.81 Aligned_cols=117 Identities=22% Similarity=0.363 Sum_probs=106.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|+++++++.....+...+...|+.+..+.+..+++..+.. ..||++++|..+++.+|.++++.++...+.+|+++++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~lt 79 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-EMYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLLT 79 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEE
Confidence 369999999999999999999889988889999999888776 5799999999999999999999999888889999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
...+......++..|+++|+.||++.+++...++.+++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 80 ARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred CCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 99888888899999999999999999999999887653
No 52
>PRK14084 two-component response regulator; Provisional
Probab=99.72 E-value=6.5e-16 Score=109.27 Aligned_cols=114 Identities=25% Similarity=0.414 Sum_probs=99.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-C-eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG-F-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g-~-~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++|+++||++..+..+...|...+ + .+..+.++++++..+.. ..||++++|+.|++.+|+++++.+++..+..++++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-~~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI~ 79 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-NQYDIIFLDINLMDESGIELAAKIQKMKEPPAIIF 79 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 479999999999999999998765 4 36689999999998886 57999999999999999999999998777778888
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+... ....+++.|+.+|+.||++.++|..+++++.
T Consensus 80 ~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~ 116 (246)
T PRK14084 80 ATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVR 116 (246)
T ss_pred EecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHH
Confidence 887643 4567899999999999999999999998765
No 53
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.71 E-value=2.4e-15 Score=105.35 Aligned_cols=116 Identities=21% Similarity=0.377 Sum_probs=105.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|+++++++.....+...|...|+.+..+.+..+++..+.. ..||++++|..+++.+|.++++.++. .+..|+++++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~-~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ-TPPDLILLDLMLPGTDGLTLCREIRR-FSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCCCEEEEE
Confidence 389999999999999999999899998889999999998876 57999999999999999999999986 4578999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
...+......++..|+++|+.||++.++|...++.+++
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 98888888889999999999999999999998877653
No 54
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.71 E-value=5.8e-16 Score=118.27 Aligned_cols=112 Identities=19% Similarity=0.343 Sum_probs=103.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC-----CCHHHHHHHHHhhCCCCcEE
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV-----MDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~-----~~g~~~~~~l~~~~~~~~ii 103 (145)
|+++||++..+..+...+ .||.+..+.+..+++..+.. ..||+|++|..+|+ .+|+++++.+++..+.+|||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~piI 77 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-HEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVI 77 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCEE
Confidence 589999999999999888 78999999999999999987 57999999999995 78999999999988999999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++|+..+.+....+++.|+++|+.||++.++|..+++..+
T Consensus 78 ~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~ 117 (445)
T TIGR02915 78 VITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAF 117 (445)
T ss_pred EEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhh
Confidence 9999999999999999999999999999999998887654
No 55
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.71 E-value=1.5e-15 Score=103.50 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=101.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSV-GFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~-g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++|+++++++..+..+...|... ++. +..+++..+++..+.. ..||++++|..+++.+|.++++.++ +..|+++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~---~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG-RGVQVCICDISMPDISGLELLSQLP---KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHc---cCCCEEE
Confidence 47999999999999999999754 565 4588999999999876 5799999999999999999988885 3578999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++...+......++..|+++|+.||++.+++..+++.+++
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 9999998889999999999999999999999999998765
No 56
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.71 E-value=8e-16 Score=118.03 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=106.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
||++||++..+..+...|...||.+..++++.+++..+.. ..||+|++|+.+|+.+|+++++.++...+.+|+|++++.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~~ 79 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-GQPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTAH 79 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeCC
Confidence 5899999999999999999999999999999999998886 579999999999999999999999998888999999999
Q ss_pred CChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 109 NSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+......++..|+++|+.||++.++|...+++++
T Consensus 80 ~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 114 (463)
T TIGR01818 80 SDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERAL 114 (463)
T ss_pred CCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHH
Confidence 88888889999999999999999999999987764
No 57
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.70 E-value=9.6e-16 Score=106.83 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=95.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHH-HHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEAT-KAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~-~~l~~~~~~~~ii 103 (145)
..++++++|+|.....++.+|. .++. +..+.++.+++..+. +||+||+|+.+|+.+|++++ +.++...|.++|+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vv 85 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKIL 85 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEE
Confidence 3469999999999999999997 4555 447788888888642 49999999999999999986 5688888999999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
++|...+..........|+.+|+.|+.+.++|..+|+.+++|
T Consensus 86 vlt~~~~~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 86 LLNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred EEECCchhHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 999987743322223359999999999999999999988764
No 58
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.70 E-value=1.6e-15 Score=102.96 Aligned_cols=117 Identities=25% Similarity=0.347 Sum_probs=106.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+.+|+++++++.....+...|...|+.+..+.+..+++..+.. ..||++++|..+++.+|+++++.++...+..|++++
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii~l 81 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-LRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVM 81 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc-CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 4579999999999999999999889998889999999988876 579999999999999999999999988888999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+...+......++..|+.+|+.||++.+++...++..+
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~ 119 (202)
T PRK09390 82 TGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERAL 119 (202)
T ss_pred ECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHH
Confidence 99888888889999999999999999999988887654
No 59
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.69 E-value=1.3e-15 Score=105.45 Aligned_cols=106 Identities=11% Similarity=0.057 Sum_probs=89.8
Q ss_pred HHHHHHHHHh---cCCeEEEecCHHHHHHHHhcCCCccEEE---EeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChH
Q 045936 39 RRIHSMILKS---VGFKVEVAENGKEAVDLFRTGAKFHIVF---IDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSET 112 (145)
Q Consensus 39 ~~~l~~~l~~---~g~~v~~~~~~~~~l~~l~~~~~~dlil---~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~ 112 (145)
+..+..+|.. .||.+..+.++++++..+.. ..||++| +|..||+.+|+++++.|++.+|.+|||++|...++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~-~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~ 81 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR-ISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEA 81 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc-CCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHH
Confidence 5677888864 35666789999999999876 5789998 677889999999999999999999999999987776
Q ss_pred HHHHHH-HhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 113 EREVFM-QAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 113 ~~~~~~-~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
....++ +.|+.+|+.||.+.++|..+|+.+++|
T Consensus 82 ~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 82 RLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred HHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 555544 799999999999999999999988754
No 60
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.68 E-value=1.1e-15 Score=116.10 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=104.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~i 102 (145)
...+||++||++..+..+...+.. ++.+..+.++.+++..+.. ..||+|++|+.||+++|+++++.+++. .+.+|+
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~-~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~i 231 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE-TNYDLVIVSANFENYDPLRLCSQLRSKERTRYVPI 231 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc-CCCCEEEecCCCCCchHhHHHHHHHhccccCCCcE
Confidence 456899999999999999999965 4666788999999998876 679999999999999999999999974 378999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+++++..+......++..|+.+|+.||+++++|...+...
T Consensus 232 i~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~ 271 (457)
T PRK09581 232 LLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQ 271 (457)
T ss_pred EEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888654
No 61
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.68 E-value=4.9e-15 Score=102.76 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=97.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC--Ce-EEEecCHHHHHHHHhcCCCccEEEEeCC--CCCCCHHHHHHHHHhhCCCCc
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG--FK-VEVAENGKEAVDLFRTGAKFHIVFIDME--MPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g--~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~--~~~~~g~~~~~~l~~~~~~~~ 101 (145)
+.|+|+||++..+..++.+|...+ +. +..++++++++..+.. ..||++++|+. ++..+|.++++.|++.+|.++
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~-~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~ 79 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS-LRPSVVFINEDCFIHDASNSQRIKQIINQHPNTL 79 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc-cCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCe
Confidence 468999999999999999998655 34 4478999999998876 57999999965 777789999999999999999
Q ss_pred EEEEecCCChHHHHHHHHhcccE-EeeCCCCHHHHHHHHHHHhhC
Q 045936 102 IVGVTSRNSETEREVFMQAGLDL-CYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~l~~~~~~ 145 (145)
++++|...+..... ++..|+.. |+.|+.++++|..+++.+.+|
T Consensus 80 iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 80 FIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred EEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 99999987766543 55555554 789999999999999988753
No 62
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.67 E-value=1.3e-14 Score=99.67 Aligned_cols=118 Identities=26% Similarity=0.425 Sum_probs=104.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-cCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKS-VGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~-~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
..+++++++++.....+...|.. .++.+. .+.+..+++..+.. ..||++++|..+++.+|.++++.+++..+..|++
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~ii 84 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-LDPDVILLDLNMKGMSGLDTLNALRRDGVTAQII 84 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 46899999999999999999975 467765 68899999988876 5799999999999999999999999888888999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++...+......++..|+++|+.||++.+++...++.+..
T Consensus 85 ~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 85 ILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred EEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 99988888888889999999999999999999999987543
No 63
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.67 E-value=1.3e-14 Score=99.69 Aligned_cols=119 Identities=23% Similarity=0.412 Sum_probs=106.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhc-CCeE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSV-GFKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~-g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
...+|+++++++.....+...|... ++.+ ..+.+.++++..+.. ..||++++|..+++.+|+++++.++...+..|+
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~v 83 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMNGLETLDKLREKSLSGRI 83 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcE
Confidence 3468999999999999999999765 5654 468899999998876 579999999999999999999999988888999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++++...+......++..|+++|+.||++.++|...++.+++
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 84 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 999999888888899999999999999999999999988764
No 64
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.67 E-value=3.2e-14 Score=89.25 Aligned_cols=119 Identities=34% Similarity=0.443 Sum_probs=104.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCc
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESK 101 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~ 101 (145)
+.++++++++++.....+...+...|+. +..+.+.++++..+.. ..+|++++|..+++.+|+++++.++... +..|
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGFGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc-cCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 4568999999999999999999988885 6688899999888876 5799999999999999999999998753 5678
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++++...+......+++.|+++|+.||++.+++...++++.+
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 8889888888888889999999999999999999999988654
No 65
>PRK13435 response regulator; Provisional
Probab=99.66 E-value=1.2e-14 Score=94.94 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=98.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~~~~~~~i 102 (145)
..++|+++++++.....+...|+..|+.+. .+++.++++..+.. ..||++++|..++ +.+|.++++.++.. +.+|+
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~dliivd~~~~~~~~~~~~~~~l~~~-~~~pi 81 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-RQPDVALVDVHLADGPTGVEVARRLSAD-GGVEV 81 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-cCCCEEEEeeecCCCCcHHHHHHHHHhC-CCCCE
Confidence 356899999999999999999998899876 78999999998876 5799999999987 47899999998764 57899
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++++..+ ...++..|+++|+.||++.++|...++++..
T Consensus 82 i~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 82 VFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred EEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 98887543 2456788999999999999999999988754
No 66
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.66 E-value=1e-14 Score=110.83 Aligned_cols=115 Identities=27% Similarity=0.369 Sum_probs=105.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEE
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKIVGV 105 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~ii~l 105 (145)
+|+++++++..+..+...|...|+.+..+.+..+++..+.. ..||+|++|..+++.+|.++++.+++.. +.+|++++
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~ 82 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER-EQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMV 82 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh-cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEE
Confidence 79999999999999999998889999999999999999886 5799999999999999999999998753 47899999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++..+......++..|+++|+.||++.++|..+++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~ 120 (457)
T PRK09581 83 TALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLT 120 (457)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 99999889999999999999999999999999887764
No 67
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.66 E-value=2.4e-14 Score=97.72 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=105.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV-GFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
..+|+++++++..+..+...|... ++.+. .+.+..+++..+.. ..||++++|..+++.+|.++++.+++..+..|++
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ii 81 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ-LEPDIVILDLGLPGMNGLDVIPQLHQRWPAMNIL 81 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 468999999999999999999875 46644 78899999888776 5799999999999999999999999888889999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++...+......++..|+++|+.||++..+|...++...+
T Consensus 82 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 82 VLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred EEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 99999888888899999999999999999999999987653
No 68
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.65 E-value=1.4e-14 Score=101.91 Aligned_cols=113 Identities=26% Similarity=0.333 Sum_probs=95.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-Ce-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG-FK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g-~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++|+|+||++..+..+...|+..| +. +..+.++.+++..+.. ..||++++|+.+++.+|+++++.++.. ...++++
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~dlv~lDi~~~~~~G~~~~~~l~~~-~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-LKPDVVFLDIQMPRISGLELVGMLDPE-HMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHhccc-CCCEEEE
Confidence 589999999999999999998887 34 3478899999998876 579999999999999999999988643 2345777
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+.. +....+++.|+.+|+.||++.++|...+.++.
T Consensus 80 vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~ 116 (238)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLR 116 (238)
T ss_pred EeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHH
Confidence 77654 35667899999999999999999999988764
No 69
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.65 E-value=6.1e-15 Score=117.58 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=103.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+++||++||++..+..+...|...||.+..+.++.+++..+.. ..||+||+|+.+|+++|+++++.++...+..|+|++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~-~~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~l 85 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA-GEIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVVV 85 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc-cCCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 5689999999999999999998889999999999999998876 579999999999999999999999998889999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHH--HHHHHHHHH
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMA--KIVPLLEEL 142 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~--~l~~~l~~~ 142 (145)
++..+......++..|+.+|+.||.... .+..+++..
T Consensus 86 t~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~ 124 (665)
T PRK13558 86 PTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESA 124 (665)
T ss_pred ECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHh
Confidence 9999999999999999999999997543 455555433
No 70
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.65 E-value=1.5e-14 Score=107.11 Aligned_cols=115 Identities=26% Similarity=0.341 Sum_probs=96.6
Q ss_pred cEEEEEeCCHHHHHHHHHHH-HhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMIL-KSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l-~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++||++||++..+..+...| ...|+.+. .++++++++..+.. ..||+|++|+.+++++|+++++.+++..+ +|+++
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-~~pDlVllD~~mp~~~G~e~l~~l~~~~~-~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-QPPDVILMDLEMPRMDGVEATRRIMAERP-CPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-cCCCEEEEcCCCCCCCHHHHHHHHHHHCC-CcEEE
Confidence 47999999999999999999 45678876 78999999999987 67999999999999999999999988654 78888
Q ss_pred EecCCC--hHHHHHHHHhcccEEeeCCC---------CHHHHHHHHHHHh
Q 045936 105 VTSRNS--ETEREVFMQAGLDLCYTKPL---------TMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~--~~~~~~~~~~g~~~~l~kP~---------~~~~l~~~l~~~~ 143 (145)
+++... ......+++.|+++|+.||+ ..+++...++.+.
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 887643 44566789999999999999 5566666666543
No 71
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.61 E-value=6.5e-14 Score=104.27 Aligned_cols=105 Identities=30% Similarity=0.398 Sum_probs=91.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV-GFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
+++||+++|++..+..+...|... |+.+. .+.+.++++..+.. ..||+|++|+.+++.+|+++++.+++..+ +|++
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-~~~DlVllD~~mp~~dgle~l~~i~~~~~-~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-LNPDVITLDVEMPVMDGLDALEKIMRLRP-TPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-hCCCEEEEeCCCCCCChHHHHHHHHHhCC-CCEE
Confidence 468999999999999999999876 78876 88999999998876 57999999999999999999999998877 8999
Q ss_pred EEecCC--ChHHHHHHHHhcccEEeeCCCCH
Q 045936 104 GVTSRN--SETEREVFMQAGLDLCYTKPLTM 132 (145)
Q Consensus 104 ~lt~~~--~~~~~~~~~~~g~~~~l~kP~~~ 132 (145)
+++... .......+++.|+++|+.||+..
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~~ 111 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFLG 111 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCccc
Confidence 998753 33556788999999999999953
No 72
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.60 E-value=9.7e-14 Score=113.23 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=106.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcC-CCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG-AKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~-~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
.+.+|+++||++..+..+...|...||.+..+.+.++++..+... .+||+|++ .+++.+|.++++.++...+.+|||
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipII 773 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPII 773 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEE
Confidence 456899999999999999999999999999999999999998653 24799999 689999999999999988999999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..........++..| ++|+.||++.++|..++++.++
T Consensus 774 vls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~ 813 (828)
T PRK13837 774 LGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALA 813 (828)
T ss_pred EEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHc
Confidence 999998888888899999 9999999999999999988764
No 73
>PRK13557 histidine kinase; Provisional
Probab=99.59 E-value=1.7e-13 Score=106.12 Aligned_cols=120 Identities=23% Similarity=0.351 Sum_probs=108.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~~~~~~~ii 103 (145)
.+.+|+++++++.....+...|+..||.+..+.+..+++..+.....||++++|..+++ .+|+++++.++...+..|++
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii 493 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 493 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 34589999999999999999999999999899999999998865336999999999997 89999999999988889999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..........++..|+.+|+.||++.++|...++.++.
T Consensus 494 ~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 494 LTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred EEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 99998888888888899999999999999999999988764
No 74
>PRK09191 two-component response regulator; Provisional
Probab=99.56 E-value=4.6e-13 Score=95.38 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=97.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~~~~~~~ii 103 (145)
..+++++++++..+..+...|+..|+.+. .+.+..+++..+.. ..||++++|..+++ .+|+++++.++... .+|++
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-~~~dlvi~d~~~~~~~~g~e~l~~l~~~~-~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-TRPGLILADIQLADGSSGIDAVNDILKTF-DVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-cCCCEEEEecCCCCCCCHHHHHHHHHHhC-CCCEE
Confidence 45799999999999999999998898877 68899999998876 57999999999985 78999999998876 88999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++++..+... .....|+.+|+.||++.++|...++++.
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~ 252 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQAL 252 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHH
Confidence 9988765443 3344678889999999999999998765
No 75
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-13 Score=92.97 Aligned_cols=113 Identities=29% Similarity=0.396 Sum_probs=96.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
..++|+++|.+..+..+...|...||.++ ++.+.-++...+.. ..||+||+|+.+|..+-.+- ..+.+..+..|+++
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~-~~pDvVildie~p~rd~~e~-~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER-LQPDVVILDIEMPRRDIIEA-LLLASENVARPIVA 82 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh-cCCCEEEEecCCCCccHHHH-HHHhhcCCCCCEEE
Confidence 45899999999999999999999999865 77788888888776 68999999999999883332 23334456778999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHH
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~ 140 (145)
++++.++.....+.+.|+.+|+.||+++..+...|.
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 999999999999999999999999999999988774
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.55 E-value=5.2e-13 Score=80.65 Aligned_cols=112 Identities=31% Similarity=0.549 Sum_probs=99.4
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCC
Q 045936 30 LVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 30 lii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
+++++++.....+...+...|+.+..+.+..+++..+.. ..+|++++|..+++.++.++++.++...+..++++++...
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 79 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-EKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHG 79 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-CCCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEecc
Confidence 478899999999999998889988888899999988876 5799999999999999999999998877788999888877
Q ss_pred ChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 110 SETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 110 ~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.......++..|+.+|+.||++.+++...++..
T Consensus 80 ~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 80 DDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred cHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 777778889999999999999999999888754
No 77
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.49 E-value=8.2e-13 Score=96.84 Aligned_cols=104 Identities=32% Similarity=0.432 Sum_probs=91.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcC-Ce-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVG-FK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g-~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
+++|+++||.+..+..+...|...| .. +..+.|+.++++.+.. ..||+|.+|..||.++|+++++.+.+. +.+||+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-~~PDVi~ld~emp~mdgl~~l~~im~~-~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-LKPDVITLDVEMPVMDGLEALRKIMRL-RPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh-cCCCEEEEecccccccHHHHHHHHhcC-CCCcEE
Confidence 3689999999999999999999888 54 5699999999999998 679999999999999999999999887 568998
Q ss_pred EEecCCC--hHHHHHHHHhcccEEeeCCCC
Q 045936 104 GVTSRNS--ETEREVFMQAGLDLCYTKPLT 131 (145)
Q Consensus 104 ~lt~~~~--~~~~~~~~~~g~~~~l~kP~~ 131 (145)
++++... .+....+++.|+.+|+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 8877443 456777899999999999984
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.47 E-value=1.2e-12 Score=95.77 Aligned_cols=88 Identities=18% Similarity=0.356 Sum_probs=79.3
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCC-CHH
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPL-TMA 133 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~-~~~ 133 (145)
.+.++++++..+.. ..||+|++|+.+|+++|+++++.+++..+.+|+|++++..+.+....+++.|+++|+.||+ +.+
T Consensus 2 ~a~~g~~al~~l~~-~~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~ 80 (303)
T PRK10693 2 LAANGVDALELLGG-FTPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDLN 80 (303)
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcHH
Confidence 46788999999887 5799999999999999999999999888889999999999999999999999999999999 488
Q ss_pred HHHHHHHHHh
Q 045936 134 KIVPLLEELQ 143 (145)
Q Consensus 134 ~l~~~l~~~~ 143 (145)
++..++++.+
T Consensus 81 ~L~~~i~~~l 90 (303)
T PRK10693 81 RLREMVFACL 90 (303)
T ss_pred HHHHHHHHHh
Confidence 8888876654
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.39 E-value=9.9e-12 Score=99.60 Aligned_cols=108 Identities=8% Similarity=0.034 Sum_probs=89.2
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH----HHHHHHH
Q 045936 27 YFALVVDDDPM--------IRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI----EATKAMR 94 (145)
Q Consensus 27 ~~vlii~~~~~--------~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~----~~~~~l~ 94 (145)
|+||++||+.. ....+...|+..||.+..+.++++++..+.....||+||+|+++|+++|+ ++++.+|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR 80 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHH
Confidence 47999999995 68999999999999999999999999999752369999999999999997 8999999
Q ss_pred hhCCCCcEEEEecCCC--hHHHHHHHHhcccEEeeCCCCHHHH
Q 045936 95 AMKVESKIVGVTSRNS--ETEREVFMQAGLDLCYTKPLTMAKI 135 (145)
Q Consensus 95 ~~~~~~~ii~lt~~~~--~~~~~~~~~~g~~~~l~kP~~~~~l 135 (145)
+..+.+|||++|+..+ ...... .-.-+++|+.+..+..++
T Consensus 81 ~~~~~iPIIlLTar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 81 ERQQNVPVFLLGDREKALAAMDRD-LLELVDEFAWILEDTADF 122 (755)
T ss_pred hhCCCCCEEEEEcCCcccccCCHH-HHHhhheEEEecCCCHHH
Confidence 8888999999999886 333222 334477888886665554
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=4.2e-10 Score=79.92 Aligned_cols=113 Identities=29% Similarity=0.436 Sum_probs=96.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-CeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG-FKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g-~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++++++||++..+..+...+.... +.+. .+.++.++++.+.. ..+|++++|+.|++++|+++.+.++...+..+|++
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivf 80 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-LRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVF 80 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc-cCCCeEEEeeccCccchHHHHHHhcccCCCCeEEE
Confidence 579999999999999999998432 3322 78899999999987 58999999999999999999999999877777888
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+|+... ....+++..+.+|+.||+..+.+...+.+.
T Consensus 81 vt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 81 VTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred EEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 888765 445566888999999999999999999764
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.82 E-value=2.4e-07 Score=76.50 Aligned_cols=113 Identities=17% Similarity=0.271 Sum_probs=91.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHH-HHHHHHhhC-CCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE-ATKAMRAMK-VESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~-~~~~l~~~~-~~~~i 102 (145)
.+.+|+++++++..+..+..+|...|+.+..+.+..+ +.. ..||++++|..+++..+.. +...++... ...++
T Consensus 535 ~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~-~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (919)
T PRK11107 535 AGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE-AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFL 609 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc-CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcE
Confidence 4568999999999999999999999999998888777 333 5699999999999876655 444444432 24557
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
++++..........+...|+++|+.||++..++...+...
T Consensus 610 i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 649 (919)
T PRK11107 610 ILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEP 649 (919)
T ss_pred EEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHh
Confidence 7778888888888899999999999999999999888653
No 82
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=98.69 E-value=5.7e-07 Score=56.23 Aligned_cols=107 Identities=17% Similarity=0.110 Sum_probs=78.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
||||+||+...+..+..+|+=.|+.+..+++.+. ...... ..++.+++-..-.. ...+.++.+.+..|..|++++..
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~-~~~~~~~v~~g~~~-~~~~~l~~l~~~~~~~Pvlllg~ 77 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS-SPWEACAVILGSCS-KLAELLKELLKWAPHIPVLLLGE 77 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh-cCCcEEEEEecCch-hHHHHHHHHHhhCCCCCEEEECC
Confidence 6899999999999999999988999887776444 333333 34565544433222 55678888888999999999988
Q ss_pred CCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 108 RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
......... +-+.+..|++..+|...|++.
T Consensus 78 ~~~~~~~~n-----vvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 78 HDSPEELPN-----VVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCccccccC-----eeEecCCCCCHHHHHHHHHHh
Confidence 776621211 555688999999999999875
No 83
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=98.38 E-value=4.3e-05 Score=48.68 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=78.5
Q ss_pred eCCHHHHHHHHHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhhCCCCcEEEEec
Q 045936 33 DDDPMIRRIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 33 ~~~~~~~~~l~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
|.+..-...+..+|+..||++.. ....++.++.+.. ..+|+|.+...+.... ..++++.+++..+....+++.+
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~-~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ-EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 45555556677788999999873 4467888888877 5799999887765432 3467778888755444455665
Q ss_pred CCChHHHHHHHHhcccEEeeCCCCHHHHHHHHH
Q 045936 108 RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~ 140 (145)
...++....+.+.|++.|+..--+.++....|+
T Consensus 89 ~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 89 IIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 556666788899999999998888888877664
No 84
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=98.27 E-value=0.00024 Score=46.19 Aligned_cols=118 Identities=11% Similarity=0.053 Sum_probs=86.1
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhh
Q 045936 26 PYFALVV----DDDPMIRRIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAM 96 (145)
Q Consensus 26 ~~~vlii----~~~~~~~~~l~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~ 96 (145)
+.+|++. |.+..-...+..+|+..||++.. ....++.++.+.+ ..+|+|.+...+.... ..++++.+++.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-TDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 3456666 66777777788889999999874 3467888888877 5799999988776442 45688888887
Q ss_pred CC-CCcEEEEecC-----CChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 97 KV-ESKIVGVTSR-----NSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 97 ~~-~~~ii~lt~~-----~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.+ +++|++-... ...+....+.+.|++.++...-+.+++...+++.+.
T Consensus 82 ~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 82 GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred CCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 44 5554433222 134455678899999999988899999999887653
No 85
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=98.27 E-value=2.1e-05 Score=49.60 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEEEecCCChHHHH
Q 045936 38 IRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV--MDGIEATKAMRAMKVESKIVGVTSRNSETERE 115 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~--~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~ 115 (145)
....+...|...|+.++.+.+.++++..+++...+..|+++|. +. ....++++.++......||.+++.....+...
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 3456778888889999999999999999998667889999997 21 23567999999999999999999877555555
Q ss_pred HHHHhcccEEeeCCCCHHHH-HHHHHHH
Q 045936 116 VFMQAGLDLCYTKPLTMAKI-VPLLEEL 142 (145)
Q Consensus 116 ~~~~~g~~~~l~kP~~~~~l-~~~l~~~ 142 (145)
.-.-..+++|+....+..++ ...|.+.
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~A 111 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAA 111 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHH
Confidence 55556688888776655444 3455443
No 86
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.27 E-value=2.2e-06 Score=65.17 Aligned_cols=90 Identities=27% Similarity=0.331 Sum_probs=77.5
Q ss_pred CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCC
Q 045936 51 FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPL 130 (145)
Q Consensus 51 ~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~ 130 (145)
+.+..+.++.+++..+.. ..+|.+++|..||+++|+++++.+++.... +++++...++......+.+|++.+++||.
T Consensus 13 ~~v~~a~~g~~~l~~~~~-~~~~~~lld~~m~~~~~~~~~~~lk~~~~~--~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 13 KEVATAKKGLIALAILLD-HKPDYKLLDVMMPGMDGFELCRRLKAEPAT--VVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhccchHHHHHHHhc-CCCCeEEeecccCCcCchhHHHHHhcCCcc--eEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 345568889999999887 689999999999999999999999986433 77888888888888999999999999999
Q ss_pred CHHHHHHHHHHHh
Q 045936 131 TMAKIVPLLEELQ 143 (145)
Q Consensus 131 ~~~~l~~~l~~~~ 143 (145)
....+..+.+.+.
T Consensus 90 ~~~~~~~r~~~l~ 102 (435)
T COG3706 90 NDSQLFLRAKSLV 102 (435)
T ss_pred ChHHHHHhhhhhc
Confidence 9999888776553
No 87
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=98.17 E-value=0.00021 Score=46.18 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=79.6
Q ss_pred eCCHHHHHHHHHHHHhcCCeEE---EecCHHHHHHHHhcCCCccEEEEeCCCCCC-C-HHHHHHHHHhhCCCCcEEEEec
Q 045936 33 DDDPMIRRIHSMILKSVGFKVE---VAENGKEAVDLFRTGAKFHIVFIDMEMPVM-D-GIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 33 ~~~~~~~~~l~~~l~~~g~~v~---~~~~~~~~l~~l~~~~~~dlil~d~~~~~~-~-g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
|-+..-...+..+|+..||+|. ...+.++.++.+.+ ..+|+|.+...+... . ...+++.|++..+....+++.+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4555556778889999999987 35678888888877 579988887665432 2 3457777877655433444554
Q ss_pred CCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 108 RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
....+....+.+.|++.|+..--+..+....+.+..
T Consensus 92 ~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 92 VIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred CCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 455566778999999999988888888888877643
No 88
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=98.15 E-value=4.2e-05 Score=39.24 Aligned_cols=54 Identities=35% Similarity=0.702 Sum_probs=47.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM 81 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~ 81 (145)
++++++++++.....+...+...|+.+..+.+..++...+.. ..++++++|+.+
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~ 54 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE-EKPDLILLDIMM 54 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh-cCCCEEEEeccC
Confidence 368999999999999999999889998889999999888876 569999998754
No 89
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=97.98 E-value=0.0008 Score=43.52 Aligned_cols=109 Identities=12% Similarity=0.117 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCeEE---EecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhhCCCCcEEEEecCC
Q 045936 35 DPMIRRIHSMILKSVGFKVE---VAENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~---~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
+..-...+...|+..||+|. ...+.++.++.+.+ ..+|+|-+...+.... ..++.+.|++....-+.+++....
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~ 92 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNL 92 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCc
Confidence 33444667888999999987 45688899998887 5799999987765433 346778888876644455555521
Q ss_pred ---ChH---HHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 110 ---SET---EREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 110 ---~~~---~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.++ ....+.+.|++..+...-+++++...+++.++
T Consensus 93 vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 93 VVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 111 24468899999999988889999999988764
No 90
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=97.83 E-value=0.0011 Score=41.89 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=65.9
Q ss_pred eCCHHHHHHHHHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCC-CCcEEEEe
Q 045936 33 DDDPMIRRIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKV-ESKIVGVT 106 (145)
Q Consensus 33 ~~~~~~~~~l~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~-~~~ii~lt 106 (145)
|.+..-...+..+|+..||++.. ..+.++.++.+.+ ..||+|.+...+... ...++++.+++..+ +++|+ +.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~-~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~-vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL-VG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE-EE
Confidence 44555556778889999999863 3467788888877 579999988765443 35678888888876 55554 44
Q ss_pred cCCChHHHHHHHHhcccEEeeC
Q 045936 107 SRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~k 128 (145)
+.........+...|+|.++..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 4444334457888999888753
No 91
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=97.65 E-value=0.0056 Score=39.30 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhcCCeEE---EecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhhCC-CCcEEEEecCC
Q 045936 36 PMIRRIHSMILKSVGFKVE---VAENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAMKV-ESKIVGVTSRN 109 (145)
Q Consensus 36 ~~~~~~l~~~l~~~g~~v~---~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~~~-~~~ii~lt~~~ 109 (145)
..-...+...|+..||+|. ...+.++.++.+.+ ..+|+|.+...+.... ..++++.+++... +++|+ +....
T Consensus 13 diGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vi-vGG~~ 90 (128)
T cd02072 13 AVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY-VGGNL 90 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEE-EECCC
Confidence 3444677888999999987 45578888888877 5799999887665442 3468888888765 54444 43331
Q ss_pred --C----hHHHHHHHHhcccEEeeCCCCHHHHHHHHH
Q 045936 110 --S----ETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 110 --~----~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~ 140 (145)
. .+....+.+.|++.++...-+++++...|+
T Consensus 91 ~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 91 VVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 1 334566889999999988878888877665
No 92
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=97.35 E-value=0.0054 Score=49.93 Aligned_cols=98 Identities=8% Similarity=0.069 Sum_probs=68.6
Q ss_pred EEEEEeCCH-H-----HHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 28 FALVVDDDP-M-----IRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 28 ~vlii~~~~-~-----~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
++++++++. . ....|...|+..||.+..+.+..++...++.......++++++-. ...++..+++....+|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P 78 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQLNEYLP 78 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHhCCCCC
Confidence 566676553 1 145677778888999999999999999888655688999996433 3558899999999999
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeC
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~k 128 (145)
|+++........+....-..+++|+..
T Consensus 79 v~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (713)
T PRK15399 79 LYAFINTHSTMDVSVQDMRMALWFFEY 105 (713)
T ss_pred EEEEcCccccccCChhHhhhcceeeee
Confidence 999877543333222333335555543
No 93
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=97.34 E-value=0.017 Score=37.68 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=83.0
Q ss_pred CcEEEE----EeCCHHHHHHHHHHHHhcCCeEE---EecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhh
Q 045936 26 PYFALV----VDDDPMIRRIHSMILKSVGFKVE---VAENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAM 96 (145)
Q Consensus 26 ~~~vli----i~~~~~~~~~l~~~l~~~g~~v~---~~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~ 96 (145)
..+|++ .|.+..-...+.+.|...||+|. .+.+.+|+++..-+ ...|+|.+.....+. ...++++.+++.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~-~dv~vIgvSsl~g~h~~l~~~lve~lre~ 90 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE-EDVDVIGVSSLDGGHLTLVPGLVEALREA 90 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh-cCCCEEEEEeccchHHHHHHHHHHHHHHh
Confidence 345544 46677777889999999999977 57789999888755 458887776543332 245677888887
Q ss_pred CCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 97 KVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+..-..+++...-.++......+.|++.++..-....+....+...
T Consensus 91 G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 91 GVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred CCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHH
Confidence 7654445667777777778888999999998766667666655443
No 94
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=97.28 E-value=0.011 Score=37.04 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCCeEEEe---cCHHHHHHHHhcCCCccEEEEeCCC-CCC-CHHHHHHHHHhhCCCCcEEEEecCC
Q 045936 35 DPMIRRIHSMILKSVGFKVEVA---ENGKEAVDLFRTGAKFHIVFIDMEM-PVM-DGIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~~---~~~~~~l~~l~~~~~~dlil~d~~~-~~~-~g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
++.-...+..+|++.||++... .+.++..+.+.. ..||+|.+...+ +.. ...++++.+|+..|++++++- +..
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G-G~~ 90 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG-GPH 90 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE-ESS
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE-CCc
Confidence 4566778899999999998755 345777787877 579999998743 333 356788888888887777644 444
Q ss_pred ChHHHHHHHH--hcccEEeeC
Q 045936 110 SETEREVFMQ--AGLDLCYTK 128 (145)
Q Consensus 110 ~~~~~~~~~~--~g~~~~l~k 128 (145)
........++ .|+|..+..
T Consensus 91 ~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 91 ATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SGHHHHHHHHHHHTSEEEEEE
T ss_pred hhcChHHHhccCcCcceecCC
Confidence 3344444554 677766543
No 95
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=97.23 E-value=0.0069 Score=49.33 Aligned_cols=97 Identities=10% Similarity=0.106 Sum_probs=66.9
Q ss_pred EEEEEeCCH------HHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 28 FALVVDDDP------MIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 28 ~vlii~~~~------~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
++++++++. .....|...|++.||.|..+.+..+++..+........++++++- . ...++..+++....+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~P 78 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK--Y-NLELCEEISKMNENLP 78 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch--h-hHHHHHHHHHhCCCCC
Confidence 456665542 124567778888999999999999999988865568899999643 2 2558999999999999
Q ss_pred EEEEecCCChHHHHHHHHhcccEEee
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
|+++........+....-.-+++|+.
T Consensus 79 v~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (714)
T PRK15400 79 LYAFANTYSTLDVSLNDLRLQVSFFE 104 (714)
T ss_pred EEEEccccccccCChHHhhhccceee
Confidence 99987754333222222233445544
No 96
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=97.19 E-value=0.0061 Score=38.33 Aligned_cols=110 Identities=13% Similarity=0.234 Sum_probs=72.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHH-HHHhhCCCCcEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATK-AMRAMKVESKIV 103 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~-~l~~~~~~~~ii 103 (145)
.+.+.+.++.+........+.|.+.|.+|+.-.+..+ +-. ..||.++++.-.+-..-..+.. ++.+.-...-.+
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----lp~-~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~v 84 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----LPP-AHYDMMLLGVAVTFRENLTMQHERLAKALSMTDFV 84 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----cCh-hhhceeeecccccccCCchHHHHHHHHHHhhhcce
Confidence 3568999999999999999999999988875443222 212 3599999988665433222211 222222222223
Q ss_pred EEec-CCChHHHHHHHHhcccEEeeCCCCHHHHHHHH
Q 045936 104 GVTS-RNSETEREVFMQAGLDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 104 ~lt~-~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l 139 (145)
+++- .......+...+.|+.+|+.||++..+|...+
T Consensus 85 ilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 85 ILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred EEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 3333 33444567788999999999999999998744
No 97
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=97.12 E-value=0.023 Score=39.27 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=69.2
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhcCCeEEEe---cCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhC
Q 045936 27 YFALVV----DDDPMIRRIHSMILKSVGFKVEVA---ENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMK 97 (145)
Q Consensus 27 ~~vlii----~~~~~~~~~l~~~l~~~g~~v~~~---~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~ 97 (145)
.+|++. |.+..-...+..+|+..||++... -+.++.++.+.. ..||+|-+...+... ...++++.+++.+
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-HKPDILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHCC
Confidence 366666 666666677888999999998732 367888888887 579999999876543 3456888888887
Q ss_pred C--CCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 98 V--ESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 98 ~--~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+ +++|++-...-... -+...|+|.|-.
T Consensus 162 ~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~ 190 (201)
T cd02070 162 LRDKVKVMVGGAPVNQE---FADEIGADGYAE 190 (201)
T ss_pred CCcCCeEEEECCcCCHH---HHHHcCCcEEEC
Confidence 6 56666554444433 455679998874
No 98
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=97.06 E-value=0.021 Score=39.97 Aligned_cols=100 Identities=12% Similarity=0.069 Sum_probs=71.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhcCCeEEEe---cCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhC
Q 045936 27 YFALVV----DDDPMIRRIHSMILKSVGFKVEVA---ENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMK 97 (145)
Q Consensus 27 ~~vlii----~~~~~~~~~l~~~l~~~g~~v~~~---~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~ 97 (145)
-+|++. |.+..-...+..+|+..||+|... -..++.++.+.+ ..||+|.+...+... ...++++.|++.+
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~-~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~ 167 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE-HKADIIGLSGLLVPSLDEMVEVAEEMNRRG 167 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEccchhccHHHHHHHHHHHHhcC
Confidence 356666 666666677788889999998743 357888888887 679999999877643 2456888888887
Q ss_pred CCCcEEEEecCCChHHHHH---HHHhcccEEee
Q 045936 98 VESKIVGVTSRNSETEREV---FMQAGLDLCYT 127 (145)
Q Consensus 98 ~~~~ii~lt~~~~~~~~~~---~~~~g~~~~l~ 127 (145)
++++|++-....+.+.... +...|+|.|-.
T Consensus 168 ~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~ 200 (213)
T cd02069 168 IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVK 200 (213)
T ss_pred CCCeEEEEChhcCHHHHhhhhccccCCCceEec
Confidence 7777776665656555433 23469988864
No 99
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=97.06 E-value=0.0032 Score=46.57 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE-ecCCChHHHHHHHHhcccEEeeC
Q 045936 50 GFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV-TSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 50 g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l-t~~~~~~~~~~~~~~g~~~~l~k 128 (145)
|.++..+.+..++-+.. ....+|++|..+-. .++.... .+...++++ ....+.+....+++.|+.+|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~----~~~~~~~--p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRAW---ARAPLVLVDADMAE----ACAAAGL--PRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhcc---ccCCeEEECchhhh----HHHhccC--CCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 34555666666553332 34678888865421 1222211 122335544 55667888999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 045936 129 PLTMAKIVPLLEEL 142 (145)
Q Consensus 129 P~~~~~l~~~l~~~ 142 (145)
|.+..+|...+.++
T Consensus 72 P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 72 PEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998775
No 100
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=96.85 E-value=0.044 Score=44.93 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEEEEecCC
Q 045936 35 DPMIRRIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
+..-...+..+|...||.|.. +.+.+++.+.... ..+++|.+...+... ....+++.|++....-..+++.+..
T Consensus 595 H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~-~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~ 673 (714)
T PRK09426 595 HDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE-NDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGVI 673 (714)
T ss_pred hhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH-cCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 344446677888889999862 4578888888776 568887776554433 2456888888876432223455443
Q ss_pred ChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 110 SETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 110 ~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+.....+.+.|+++|+..-.+..+++..+++.+
T Consensus 674 ~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 674 PPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred ChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 4444567889999999998888888888887765
No 101
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.80 E-value=0.027 Score=47.41 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=41.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDME 80 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~ 80 (145)
.+.+||++||++..+..+..+|+.+|+.|..+.+. ... ..||+||+|..
T Consensus 688 ~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~~~-~~~Dlvl~D~~ 736 (894)
T PRK10618 688 DGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------LIS-QEYDIFLTDNP 736 (894)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------ccC-CCCCEEEECCC
Confidence 46799999999999999999999999999877652 223 56999999987
No 102
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=96.55 E-value=0.079 Score=33.66 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCChHH
Q 045936 37 MIRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMPVM-DGIEATKAMRAMKVESKIVGVTSRNSETE 113 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~ 113 (145)
.-...+..++.+.|+.+. .....++.++.+.....||+|.+....... ....+++.+|+..|+++|++-..... ..
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t-~~ 81 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHAT-FF 81 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchh-hC
Confidence 344567788888887755 234556667766541469999998755443 35678999999888777664433322 22
Q ss_pred HHH-HHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 114 REV-FMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 114 ~~~-~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
... ....++ ||+..--....+...++.+.
T Consensus 82 p~~~~~~~~~-D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 82 PEEILEEPGV-DFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred HHHHhcCCCC-CEEEECCcHHHHHHHHHHHH
Confidence 223 233445 55655555555555555543
No 103
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=96.31 E-value=0.1 Score=36.05 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhhC--CCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAMK--VESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~~--~~~~ii~lt 106 (145)
.+..-...+..+|+..||+|.. -...++.++.+.. ..||+|.+...+.... ..++++.+++.. +.++|++-.
T Consensus 96 ~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG 174 (197)
T TIGR02370 96 VHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-EKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGG 174 (197)
T ss_pred hhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 3344445667788899999873 3367888888887 6799999998776542 346788888873 245555444
Q ss_pred cCCChHHHHHHHHhcccEEee
Q 045936 107 SRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~ 127 (145)
..-.+. -+...|+|.|-.
T Consensus 175 ~~~~~~---~~~~~gad~~~~ 192 (197)
T TIGR02370 175 APVTQD---WADKIGADVYGE 192 (197)
T ss_pred hhcCHH---HHHHhCCcEEeC
Confidence 444432 355779998864
No 104
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.05 E-value=0.27 Score=34.43 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=61.9
Q ss_pred HHHHHHhcC-CeEEEecCHHHHHHHHhcC--CCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHH
Q 045936 42 HSMILKSVG-FKVEVAENGKEAVDLFRTG--AKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFM 118 (145)
Q Consensus 42 l~~~l~~~g-~~v~~~~~~~~~l~~l~~~--~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~ 118 (145)
+...+.+.+ ..|....+.++++...+.- ..++++ +..+....+++.++.+++.+|+ .+|...+-.+.+....+.
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~i--Eitl~~~~~~~~I~~l~~~~p~-~~IGAGTVl~~~~a~~a~ 84 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVL--EVTLRTPAALEAIRLIAKEVPE-ALIGAGTVLNPEQLAQAI 84 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEE--EEecCCccHHHHHHHHHHHCCC-CEEEEeeccCHHHHHHHH
Confidence 445566666 3466788888887765431 235544 4445555799999999988875 344555666778899999
Q ss_pred HhcccEEeeCCCCHHHHHHHH
Q 045936 119 QAGLDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 119 ~~g~~~~l~kP~~~~~l~~~l 139 (145)
++|++-.+..-+++ ++.+..
T Consensus 85 ~aGA~FivsP~~~~-~vi~~a 104 (212)
T PRK05718 85 EAGAQFIVSPGLTP-PLLKAA 104 (212)
T ss_pred HcCCCEEECCCCCH-HHHHHH
Confidence 99997665544444 555443
No 105
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=95.76 E-value=0.34 Score=38.24 Aligned_cols=107 Identities=17% Similarity=0.108 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhcC-CeEEEec------CHHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEe
Q 045936 35 DPMIRRIHSMILKSVG-FKVEVAE------NGKEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g-~~v~~~~------~~~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt 106 (145)
.|.-...+...|+..| +.|...+ +.++..+.+.. ..||+|.+....+... ..++++.+|+..|+++||+-
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~-~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G- 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA-HCPDLVLITAITPAIYIACETLKFARERLPNAIIVLG- 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh-cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc-
Confidence 5777788999998889 5666432 34455566665 5799999876555433 45788888888888777644
Q ss_pred cCCChHHHHHHHH-hcccEEeeCCCCHHHHHHHHHHHh
Q 045936 107 SRNSETEREVFMQ-AGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 107 ~~~~~~~~~~~~~-~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+.........++. ...-||+..--....+...++.+.
T Consensus 99 G~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 99 GIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred CCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHH
Confidence 3332223334443 344466766767777777666543
No 106
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=95.74 E-value=0.41 Score=34.31 Aligned_cols=89 Identities=13% Similarity=0.039 Sum_probs=62.0
Q ss_pred EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEEEEecCCChHHHHHHHHhcccEE-eeCCC
Q 045936 53 VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVESKIVGVTSRNSETEREVFMQAGLDLC-YTKPL 130 (145)
Q Consensus 53 v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~~~~~g~~~~-l~kP~ 130 (145)
++.........+.+.. ..+|.|++|+.....+..++...++.. ...+.+++=....+...+..+++.|++++ ++|--
T Consensus 16 ~~~~~~~p~~~e~~~~-~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~ 94 (249)
T TIGR02311 16 LWLGLADPYAAEICAG-AGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIE 94 (249)
T ss_pred EEEeCCCcHHHHHHHh-cCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcC
Confidence 3333333455555554 459999999988888877777777664 32344444456667778899999999997 57788
Q ss_pred CHHHHHHHHHHH
Q 045936 131 TMAKIVPLLEEL 142 (145)
Q Consensus 131 ~~~~l~~~l~~~ 142 (145)
+.++....++.+
T Consensus 95 s~e~a~~~v~~~ 106 (249)
T TIGR02311 95 TAEQAEAAVAAT 106 (249)
T ss_pred CHHHHHHHHHHc
Confidence 888888777653
No 107
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.41 E-value=0.52 Score=33.95 Aligned_cols=101 Identities=14% Similarity=0.030 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCe--EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC-CCCcEEEEecCCChHHHHH
Q 045936 40 RIHSMILKSVGFK--VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK-VESKIVGVTSRNSETEREV 116 (145)
Q Consensus 40 ~~l~~~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~ 116 (145)
..++..|...... .+.........+.+.. ..+|.|++|+.....+--++...++... ..+..++=....++..+..
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~-~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGL-AGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHh-cCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 4466666553322 3332333455555554 3599999999998888777777776643 3444454556668888999
Q ss_pred HHHhcccEEeeC-CCCHHHHHHHHHH
Q 045936 117 FMQAGLDLCYTK-PLTMAKIVPLLEE 141 (145)
Q Consensus 117 ~~~~g~~~~l~k-P~~~~~l~~~l~~ 141 (145)
+++.|+++++.. --+.++....++.
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 999999998654 4556666666543
No 108
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.27 E-value=0.6 Score=32.16 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=58.0
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCCC--------CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPVM--------DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~~--------~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+++.+++.+.... .+|.|.++.-.+.. .|++.++.+++..+.+||++..+- +.+....++..|++.+.
T Consensus 110 ~~~t~~e~~~a~~~--gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 110 STHTLEEAAAALAA--GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVA 186 (212)
T ss_pred eCCCHHHHHHHhHc--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 55677777776654 48999876444332 257888998887655888766555 67788889999999985
Q ss_pred -----eCCCCHHHHHHHHHHHh
Q 045936 127 -----TKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 127 -----~kP~~~~~l~~~l~~~~ 143 (145)
.+.-++.+....+.+.+
T Consensus 187 ~gs~i~~~~d~~~~~~~l~~~~ 208 (212)
T PRK00043 187 VVSAITGAEDPEAAARALLAAF 208 (212)
T ss_pred EeHHhhcCCCHHHHHHHHHHHH
Confidence 34445555555554443
No 109
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=95.22 E-value=0.16 Score=35.04 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=53.5
Q ss_pred HHHHHhcCC-eEEEecCHHHHHHH---HhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHH
Q 045936 43 SMILKSVGF-KVEVAENGKEAVDL---FRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFM 118 (145)
Q Consensus 43 ~~~l~~~g~-~v~~~~~~~~~l~~---l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~ 118 (145)
.+.|++.+. .+....+.+++... +.++ .+. +++..+...+.++.++.+++.+|++ ++-..+-.+.+....+.
T Consensus 2 ~~~l~~~~iiaVir~~~~~~a~~~~~al~~g-Gi~--~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~ 77 (196)
T PF01081_consen 2 EERLKENKIIAVIRGDDPEDAVPIAEALIEG-GIR--AIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAI 77 (196)
T ss_dssp HHHHHHHSEEEEETTSSGGGHHHHHHHHHHT-T----EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHH
T ss_pred hHHHhhCCEEEEEEcCCHHHHHHHHHHHHHC-CCC--EEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHH
Confidence 345555563 34455555555443 3332 234 4455555667899999999888763 45566677888999999
Q ss_pred HhcccEEeeCCCCHHHHHHHH
Q 045936 119 QAGLDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 119 ~~g~~~~l~kP~~~~~l~~~l 139 (145)
++|++-.+. |...+++.+..
T Consensus 78 ~aGA~FivS-P~~~~~v~~~~ 97 (196)
T PF01081_consen 78 AAGAQFIVS-PGFDPEVIEYA 97 (196)
T ss_dssp HHT-SEEEE-SS--HHHHHHH
T ss_pred HcCCCEEEC-CCCCHHHHHHH
Confidence 999976665 44444444433
No 110
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=95.20 E-value=0.51 Score=33.70 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=65.9
Q ss_pred EEEEEeCCHHHHHHHHHHH------HhcCCeEE--EecCHHHHHHHHhcCCCccEEEE-----eCCCCCCCHHHHHHHHH
Q 045936 28 FALVVDDDPMIRRIHSMIL------KSVGFKVE--VAENGKEAVDLFRTGAKFHIVFI-----DMEMPVMDGIEATKAMR 94 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l------~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~-----d~~~~~~~g~~~~~~l~ 94 (145)
++=|+.|+.....-+...+ -..||.+. +..|...+-+.... .+++|.- .... +..-.++++.++
T Consensus 95 KlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~--G~~~vmPlg~pIGsg~-Gi~~~~~I~~I~ 171 (248)
T cd04728 95 KLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA--GCAAVMPLGSPIGSGQ-GLLNPYNLRIII 171 (248)
T ss_pred EEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc--CCCEeCCCCcCCCCCC-CCCCHHHHHHHH
Confidence 5555655544333322222 23488866 55566666555443 4677621 1111 122267888888
Q ss_pred hhCCCCcEEEEecCCChHHHHHHHHhcccEEe-----eCCCCHHHHHHHH
Q 045936 95 AMKVESKIVGVTSRNSETEREVFMQAGLDLCY-----TKPLTMAKIVPLL 139 (145)
Q Consensus 95 ~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~l 139 (145)
+. .++|||+=..-..++....+++.|+++++ .|.-++..+....
T Consensus 172 e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af 220 (248)
T cd04728 172 ER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAF 220 (248)
T ss_pred Hh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHH
Confidence 76 57888888888899999999999999985 4544454444444
No 111
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.05 E-value=0.22 Score=34.17 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=52.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC--CCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM--PVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~--~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++||++|+...+--.|.+++++.|..+....+.+-....++. ..||.|++.--- |. +.-...+.+++.....||+-
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~-~~pd~iviSPGPG~P~-d~G~~~~~i~~~~~~~PiLG 79 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA-LKPDAIVISPGPGTPK-DAGISLELIRRFAGRIPILG 79 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh-cCCCEEEEcCCCCChH-HcchHHHHHHHhcCCCCEEE
Confidence 579999999999999999999999777655554333334554 468999987432 11 11123444444444578876
Q ss_pred EecC
Q 045936 105 VTSR 108 (145)
Q Consensus 105 lt~~ 108 (145)
++-.
T Consensus 80 VCLG 83 (191)
T COG0512 80 VCLG 83 (191)
T ss_pred ECcc
Confidence 6543
No 112
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.92 E-value=0.8 Score=33.45 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=64.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---cC--Ce-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCC-CC
Q 045936 28 FALVVDDDPMIRRIHSMILKS---VG--FK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKV-ES 100 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~---~g--~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~-~~ 100 (145)
.||+-|++-... .+...++. .. .. .+.+.+.+++.+.+.. .+|+|++|- +....--+..+.++.... ..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a--gaDiI~LDn-~~~e~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA--GADIIMLDN-MTPEEIREVIEALKREGLRER 231 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc--CcCEEEECC-CCHHHHHHHHHHHHhcCcCCC
Confidence 378888886655 55555533 22 22 3489999999999986 389999994 333334455666665442 22
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..+..++.-+.+........|+|.+-
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 34666778888889999999998864
No 113
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=94.71 E-value=0.95 Score=31.51 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=57.3
Q ss_pred HHHHHHhcCC-eEEEecCHHHHHHHHhcC--CCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHH
Q 045936 42 HSMILKSVGF-KVEVAENGKEAVDLFRTG--AKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFM 118 (145)
Q Consensus 42 l~~~l~~~g~-~v~~~~~~~~~l~~l~~~--~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~ 118 (145)
+.+.|...+. .+....+.++++..++.- .... ++.+.+...++.+.++.+++.++..-+|-..+-.+.+....+.
T Consensus 3 ~~~~l~~~~~~~v~r~~~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~ 80 (206)
T PRK09140 3 LMQPFTKLPLIAILRGITPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred hhhHHHhCCEEEEEeCCCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHH
Confidence 3455555553 355666666666554321 1233 4455555667888888888877643345555666777888889
Q ss_pred HhcccEEeeCCCCHHHHHHHH
Q 045936 119 QAGLDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 119 ~~g~~~~l~kP~~~~~l~~~l 139 (145)
++|++..+. |....++....
T Consensus 81 ~aGA~fivs-p~~~~~v~~~~ 100 (206)
T PRK09140 81 DAGGRLIVT-PNTDPEVIRRA 100 (206)
T ss_pred HcCCCEEEC-CCCCHHHHHHH
Confidence 999966554 55555555443
No 114
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.65 E-value=0.72 Score=32.10 Aligned_cols=91 Identities=11% Similarity=0.196 Sum_probs=53.8
Q ss_pred HHHhcCC-eEEEecCHHHHHHHHhc--CCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhc
Q 045936 45 ILKSVGF-KVEVAENGKEAVDLFRT--GAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAG 121 (145)
Q Consensus 45 ~l~~~g~-~v~~~~~~~~~l~~l~~--~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g 121 (145)
.|.+.+. .+....+.++++...+. .....++=+.+ ..-..++.++.+++.++. -++-..+-.+.+....+.++|
T Consensus 4 ~l~~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~~~-~~vGAGTVl~~~~a~~a~~aG 80 (204)
T TIGR01182 4 LLREAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEVPD-ALIGAGTVLNPEQLRQAVDAG 80 (204)
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcC
Confidence 3444452 35566666666554332 02345444443 445678888888887764 234455666778888888888
Q ss_pred ccEEeeCCCCHHHHHHHH
Q 045936 122 LDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 122 ~~~~l~kP~~~~~l~~~l 139 (145)
++-.+ .|....++.+..
T Consensus 81 A~Fiv-sP~~~~~v~~~~ 97 (204)
T TIGR01182 81 AQFIV-SPGLTPELAKHA 97 (204)
T ss_pred CCEEE-CCCCCHHHHHHH
Confidence 86554 455555555443
No 115
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=94.63 E-value=1.2 Score=32.34 Aligned_cols=100 Identities=11% Similarity=0.042 Sum_probs=63.3
Q ss_pred HHHHHHHhcCC--eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC-CCCcEEEEecCCChHHHHHH
Q 045936 41 IHSMILKSVGF--KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK-VESKIVGVTSRNSETEREVF 117 (145)
Q Consensus 41 ~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~ 117 (145)
.++..|+.... -.+.....-...+.+.. ..+|.|++|......+--++...++... ..+..++=....++..+..+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~-~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~ 86 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAAT-SGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQV 86 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHH-cCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHH
Confidence 35555654322 23322333445555544 3599999999998888777776776643 34444555566778889999
Q ss_pred HHhcccEEeeCCC-CHHHHHHHHHH
Q 045936 118 MQAGLDLCYTKPL-TMAKIVPLLEE 141 (145)
Q Consensus 118 ~~~g~~~~l~kP~-~~~~l~~~l~~ 141 (145)
++.|+++.+..-+ +.++....++.
T Consensus 87 LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 87 LDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred hCCCCCeeEecCcCCHHHHHHHHHh
Confidence 9999999876544 45665555543
No 116
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.60 E-value=0.37 Score=35.34 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=63.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----cC-C-eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 28 FALVVDDDPMIRRIHSMILKS----VG-F-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~----~g-~-~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
.|+|-|++-.....+...++. .+ . ..+.+.+.+++.+.+.. .+|+|.+| +|....--+.++.++..++++
T Consensus 172 ~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~--gaDiI~LD-nm~~e~vk~av~~~~~~~~~v- 247 (289)
T PRK07896 172 AALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE--GAELVLLD-NFPVWQTQEAVQRRDARAPTV- 247 (289)
T ss_pred eeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc--CCCEEEeC-CCCHHHHHHHHHHHhccCCCE-
Confidence 477777775554334443332 22 2 24488999999999875 48999999 555444445555555555443
Q ss_pred EEEEecCCChHHHHHHHHhcccEEe
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+..++.-+.+........|+|.+-
T Consensus 248 ~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 248 LLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4667778888999999999998864
No 117
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=94.41 E-value=0.71 Score=28.82 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=50.9
Q ss_pred eCCHHHHHHHHHHHHhcCCeEEEe---cCHHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHHHhhCC-CCcEEEE
Q 045936 33 DDDPMIRRIHSMILKSVGFKVEVA---ENGKEAVDLFRTGAKFHIVFIDMEMPVM-DGIEATKAMRAMKV-ESKIVGV 105 (145)
Q Consensus 33 ~~~~~~~~~l~~~l~~~g~~v~~~---~~~~~~l~~l~~~~~~dlil~d~~~~~~-~g~~~~~~l~~~~~-~~~ii~l 105 (145)
+.++.-...+...++..|+.+... ...++..+.+.. ..||+|.+....... .....+..+++..+ ++++++-
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~-~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE-EDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH-cCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 556666677888899999997743 366777777776 579999998766543 35566777777766 6666544
No 118
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.39 E-value=0.31 Score=35.55 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=64.0
Q ss_pred EEEEEeCCHHHHH---HHHHHHH---hc-C-Ce-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCC
Q 045936 28 FALVVDDDPMIRR---IHSMILK---SV-G-FK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKV 98 (145)
Q Consensus 28 ~vlii~~~~~~~~---~l~~~l~---~~-g-~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~ 98 (145)
.|||-|++-.... .+...++ +. + .. .+.+.+.+++.+.+.. .+|+|++| +++..+-.+.++.+++..+
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~--GaDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA--SPDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc--CcCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 3677777655543 3444332 22 2 22 3478899999999876 38999999 4555555566666654444
Q ss_pred CCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 99 ESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 99 ~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.. .+..++.-+.+........|+|-+.
T Consensus 235 ~~-~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 235 IP-TLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred CE-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 33 5677888899999999999998864
No 119
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.39 E-value=0.85 Score=31.16 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=56.8
Q ss_pred HHHHHhcCCeE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhc
Q 045936 43 SMILKSVGFKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAG 121 (145)
Q Consensus 43 ~~~l~~~g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g 121 (145)
....+..|..+ ..+++.+|+.+..+. .+|.+-++- .+. .|.+.++.++...+..|++.+.+- +.+.....+..|
T Consensus 90 ~~~~~~~~~~~i~gv~t~~e~~~A~~~--Gad~i~~~p-~~~-~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G 164 (190)
T cd00452 90 VKAANRAGIPLLPGVATPTEIMQALEL--GADIVKLFP-AEA-VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAG 164 (190)
T ss_pred HHHHHHcCCcEECCcCCHHHHHHHHHC--CCCEEEEcC-Ccc-cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCC
Confidence 33344445443 367799999888765 479887743 233 388999999887777887766555 788899999999
Q ss_pred ccEEe
Q 045936 122 LDLCY 126 (145)
Q Consensus 122 ~~~~l 126 (145)
++.+-
T Consensus 165 ~~~v~ 169 (190)
T cd00452 165 VVAVG 169 (190)
T ss_pred CEEEE
Confidence 98864
No 120
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.38 E-value=0.43 Score=32.17 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=63.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----cC--Ce-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 28 FALVVDDDPMIRRIHSMILKS----VG--FK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~----~g--~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
.+++-+++-.....+...++. .+ .. .+.+.+.+++.+.+.. .+|+|.+|-..| .+--++++.++...+.
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~--g~d~I~lD~~~~-~~~~~~v~~l~~~~~~- 127 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA--GADIIMLDNMSP-EDLKEAVEELRELNPR- 127 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT--T-SEEEEES-CH-HHHHHHHHHHHHHTTT-
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh--CCCEEEecCcCH-HHHHHHHHHHhhcCCc-
Confidence 477777776665545554432 23 22 3488999999999886 399999995433 3344566666666665
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..+.+++.-+.+.+......|+|.+-
T Consensus 128 v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 128 VKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp SEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 55677888888899999999998764
No 121
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.37 E-value=1.2 Score=31.22 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=60.0
Q ss_pred HHHHhcC-CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC--cEEEEecCCChHHHHHHHHh
Q 045936 44 MILKSVG-FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES--KIVGVTSRNSETEREVFMQA 120 (145)
Q Consensus 44 ~~l~~~g-~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~--~ii~lt~~~~~~~~~~~~~~ 120 (145)
..|.+.+ ..|....+.++++...+.-..-.+=+++..+..-.+++.++.+++.++.. -++-..+-.+.+....+.++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a 87 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA 87 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc
Confidence 4555666 34667777787766554311112334555555667889999998876543 24455666788888899999
Q ss_pred cccEEeeCCCCHHHHHHHH
Q 045936 121 GLDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 121 g~~~~l~kP~~~~~l~~~l 139 (145)
|++-.+ .|...+++....
T Consensus 88 GA~Fiv-sP~~~~~v~~~~ 105 (213)
T PRK06552 88 GAQFIV-SPSFNRETAKIC 105 (213)
T ss_pred CCCEEE-CCCCCHHHHHHH
Confidence 997655 566555555543
No 122
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.28 E-value=0.53 Score=34.51 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=62.8
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hcC--CeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 28 FALVVDDDPMIRRIHSMILK----SVG--FKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~----~~g--~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
.|||-|++-.....+...+. ..+ ..+. .+++.+++.+.+.. .+|+|.+| ++....--+.++.+++..+++
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~--GaD~I~LD-n~~~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY--GADIIMLD-NMPVDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc--CCCEEEEC-CCCHHHHHHHHHHHHhcCCCe
Confidence 47888877655544444442 234 2333 78999999999875 48999999 333333334555555555555
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+ +..++.-+.+........|+|.+-
T Consensus 245 ~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 245 K-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred E-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 4 445666788888888999998864
No 123
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=94.04 E-value=0.78 Score=33.37 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=63.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----cCCe--E-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 28 FALVVDDDPMIRRIHSMILKS----VGFK--V-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~----~g~~--v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
-|||=|++-.....+...+++ .+|. + +.+.+.+++.+.+.. .+|+|++| +|....--+.++.+. ....
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a--gaDiImLD-Nm~~e~~~~av~~l~--~~~~ 234 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA--GADIIMLD-NMSPEELKEAVKLLG--LAGR 234 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc--CCCEEEec-CCCHHHHHHHHHHhc--cCCc
Confidence 377777777766656666643 3553 2 389999999999986 38999999 343333334444441 2233
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.++-.++.-..+........|+|.+-
T Consensus 235 ~~lEaSGgIt~~ni~~yA~tGVD~IS 260 (280)
T COG0157 235 ALLEASGGITLENIREYAETGVDVIS 260 (280)
T ss_pred eEEEEeCCCCHHHHHHHhhcCCCEEE
Confidence 45667888888889888999998763
No 124
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.91 E-value=0.54 Score=35.12 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+++.+.+..+-.+|+|.+|...+... ..+++++|++..|+.++++ .+..+.+....+.++|++...
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 34444554421359999999887654 5578999999888777654 234477788889999999965
No 125
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.90 E-value=2 Score=34.41 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=57.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcC--------------------CCccEEEEeCCCCCCCH
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG--------------------AKFHIVFIDMEMPVMDG 86 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~--------------------~~~dlil~d~~~~~~~g 86 (145)
-+++|++-.+.-+ .+.+.|++.|++++..+..++..+.+++. +..|.+++-..-+. +.
T Consensus 418 ~hiiI~G~G~~G~-~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~-~~ 495 (558)
T PRK10669 418 NHALLVGYGRVGS-LLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGY-EA 495 (558)
T ss_pred CCEEEECCChHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChH-HH
Confidence 3566666655333 34444555555555444333333333220 23565555433222 22
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
..++..+++..++.++++-+. +++......+.|+|..+. | ..++...+.+.
T Consensus 496 ~~iv~~~~~~~~~~~iiar~~--~~~~~~~l~~~Gad~vv~-p--~~~~a~~i~~~ 546 (558)
T PRK10669 496 GEIVASAREKRPDIEIIARAH--YDDEVAYITERGANQVVM-G--EREIARTMLEL 546 (558)
T ss_pred HHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHcCCCEEEC-h--HHHHHHHHHHH
Confidence 245566677778888876654 445566667899997663 3 34444444443
No 126
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=93.87 E-value=2.3 Score=32.59 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=59.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEE---------------EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHH
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVE---------------VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEAT 90 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~---------------~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~ 90 (145)
..+++|+.+.+.....+...++..|.... ......+....+. ..|++++--.....-|..++
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~---~aDi~~v~~S~~e~~g~~~l 338 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA---IADIAFVGGSLVKRGGHNPL 338 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH---hCCEEEECCCcCCCCCCCHH
Confidence 45677888877655677777777665322 2222334444433 36887764333222333344
Q ss_pred HHHHhhCCCCcEEEEecCCChHHHHHHH-HhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 91 KAMRAMKVESKIVGVTSRNSETEREVFM-QAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 91 ~~l~~~~~~~~ii~lt~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+.+. ..+|||.-....+........ .. +++..|-+.++|...+.++++
T Consensus 339 EAma---~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 339 EPAA---FGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHH---hCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHHhc
Confidence 4332 356776432223333332222 33 345568889999998887753
No 127
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.78 E-value=1.8 Score=31.06 Aligned_cols=88 Identities=10% Similarity=0.042 Sum_probs=57.9
Q ss_pred hcCCeEE--EecCHHHHHHHHhcCCCccEEEE-----eCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHh
Q 045936 48 SVGFKVE--VAENGKEAVDLFRTGAKFHIVFI-----DMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQA 120 (145)
Q Consensus 48 ~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~-----d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ 120 (145)
..||.+. +..|...+-+...- .+++|.- .... +..-.++++.+++. .+.|||+=..-..++....+++.
T Consensus 121 ~~Gf~vlpyc~~d~~~ak~l~~~--G~~~vmPlg~pIGsg~-gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~Amel 196 (250)
T PRK00208 121 KEGFVVLPYCTDDPVLAKRLEEA--GCAAVMPLGAPIGSGL-GLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMEL 196 (250)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHc--CCCEeCCCCcCCCCCC-CCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHc
Confidence 3488866 55566666555544 4677621 1111 11125778888876 57888888888999999999999
Q ss_pred cccEEe-----eCCCCHHHHHHHH
Q 045936 121 GLDLCY-----TKPLTMAKIVPLL 139 (145)
Q Consensus 121 g~~~~l-----~kP~~~~~l~~~l 139 (145)
|+++++ .|.-++..+....
T Consensus 197 GAdgVlV~SAItka~dP~~ma~af 220 (250)
T PRK00208 197 GADAVLLNTAIAVAGDPVAMARAF 220 (250)
T ss_pred CCCEEEEChHhhCCCCHHHHHHHH
Confidence 999985 4544455544444
No 128
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.73 E-value=0.76 Score=33.45 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=61.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----cCC--e-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 28 FALVVDDDPMIRRIHSMILKS----VGF--K-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~----~g~--~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
.||+-|++-.....+...+++ .++ . .+.+++.+++...+.. .+|+|.+|- ++-..--+.+++++...++.
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~--GaDiI~LDn-~~~e~l~~~v~~~~~~~~~~ 230 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA--GADIVMCDN-MSVEEIKEVVAYRNANYPHV 230 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc--CCCEEEECC-CCHHHHHHHHHHhhccCCCe
Confidence 467777776555555554432 343 2 3489999999999976 389999873 22222233444443333443
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEee
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+..++.-+++........|+|.+..
T Consensus 231 -~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 231 -LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred -EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 45566677889999999999988743
No 129
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.73 E-value=0.75 Score=34.44 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=43.4
Q ss_pred CccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 71 KFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 71 ~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+|+|++|....... -++.+++||+..|.. .|+-.+-..++....+.++|||....
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~-~viaGNV~T~e~a~~Li~aGAD~ikV 177 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEH-TIMAGNVVTGEMVEELILSGADIVKV 177 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCC-eEEEecccCHHHHHHHHHcCCCEEEE
Confidence 489999998776544 567899999988764 34455577888889999999999754
No 130
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.57 E-value=0.96 Score=27.33 Aligned_cols=76 Identities=16% Similarity=0.037 Sum_probs=49.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEe------cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVA------ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~------~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
+|+|++........++..+++.|+..... ......+...- ...|+||+=.+.-.-+....++..-+. .+.|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t~~vsH~~~~~vk~~akk-~~ip 77 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFTDYVSHNAMWKVKKAAKK-YGIP 77 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEeCCcChHHHHHHHHHHHH-cCCc
Confidence 48899998888899999999999887766 22222233222 247988877766665555555544332 2567
Q ss_pred EEEEe
Q 045936 102 IVGVT 106 (145)
Q Consensus 102 ii~lt 106 (145)
++..-
T Consensus 78 ~~~~~ 82 (97)
T PF10087_consen 78 IIYSR 82 (97)
T ss_pred EEEEC
Confidence 76553
No 131
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.54 E-value=1.5 Score=35.57 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=55.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcC--------------------CCccEEEEeCCCCCCCH
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG--------------------AKFHIVFIDMEMPVMDG 86 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~--------------------~~~dlil~d~~~~~~~g 86 (145)
.+|+|++-.+.- ..+.+.|...|+.++..+...+.++.+++. ...+++++-.+-+ ...
T Consensus 401 ~~vII~G~Gr~G-~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~-~~n 478 (601)
T PRK03659 401 PQVIIVGFGRFG-QVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEP-EDT 478 (601)
T ss_pred CCEEEecCchHH-HHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCH-HHH
Confidence 356666655433 334444555555555444434444433321 2345555544322 334
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
..++...|+.+|+.+|++-+ .+++......+.|++..++
T Consensus 479 ~~i~~~~r~~~p~~~IiaRa--~~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 479 MKIVELCQQHFPHLHILARA--RGRVEAHELLQAGVTQFSR 517 (601)
T ss_pred HHHHHHHHHHCCCCeEEEEe--CCHHHHHHHHhCCCCEEEc
Confidence 56777788888888886544 4566777888999998764
No 132
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=93.51 E-value=1.7 Score=30.88 Aligned_cols=94 Identities=13% Similarity=0.078 Sum_probs=51.5
Q ss_pred HHHHhcCCeEEE--ecCHHHHHHHHhcCCCccEEEEeCCCCCCCH---HHHHHHHHhhCCCCcEEEEecCCChHHHHHHH
Q 045936 44 MILKSVGFKVEV--AENGKEAVDLFRTGAKFHIVFIDMEMPVMDG---IEATKAMRAMKVESKIVGVTSRNSETEREVFM 118 (145)
Q Consensus 44 ~~l~~~g~~v~~--~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g---~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~ 118 (145)
..|-..||.|.. ..|.--+-+.... .+.-+.-+..-+....| ...++.|++.. ++|+|+=++-..++....++
T Consensus 117 e~Lv~eGF~VlPY~~~D~v~akrL~d~-GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AM 194 (247)
T PF05690_consen 117 EILVKEGFVVLPYCTDDPVLAKRLEDA-GCAAVMPLGSPIGSGRGIQNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAM 194 (247)
T ss_dssp HHHHHTT-EEEEEE-S-HHHHHHHHHT-T-SEBEEBSSSTTT---SSTHHHHHHHHHHG-SSSBEEES---SHHHHHHHH
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHHHC-CCCEEEecccccccCcCCCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHH
Confidence 455567999873 3344444444443 33333333332222233 35677777665 78999989999999999999
Q ss_pred HhcccEEee-----CCCCHHHHHHHH
Q 045936 119 QAGLDLCYT-----KPLTMAKIVPLL 139 (145)
Q Consensus 119 ~~g~~~~l~-----kP~~~~~l~~~l 139 (145)
+.|+++.|. +--++-.+.++.
T Consensus 195 ElG~daVLvNTAiA~A~dPv~MA~Af 220 (247)
T PF05690_consen 195 ELGADAVLVNTAIAKAKDPVAMARAF 220 (247)
T ss_dssp HTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred HcCCceeehhhHHhccCCHHHHHHHH
Confidence 999999873 344444444443
No 133
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=93.47 E-value=1.1 Score=32.19 Aligned_cols=77 Identities=6% Similarity=0.037 Sum_probs=54.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcC-CCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG-AKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~-~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.|-+.-.++.....+..+|....|.+..+.+.++.+..+... ..+|++++..... -..++..|.+.+--.|+|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~---~~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPL---LPPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTST---THHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCC---cHHHHHHHHHcCccccEEEEe
Confidence 355666778889999999988789999999999999998753 4699999886543 456788898888888998886
Q ss_pred c
Q 045936 107 S 107 (145)
Q Consensus 107 ~ 107 (145)
.
T Consensus 79 ~ 79 (283)
T PF07688_consen 79 S 79 (283)
T ss_dssp -
T ss_pred c
Confidence 6
No 134
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=93.40 E-value=2.1 Score=30.72 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=57.5
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC-CCCcEEEEecCCChHHHHHHHHhcccEEeeC-CCCHHHH
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK-VESKIVGVTSRNSETEREVFMQAGLDLCYTK-PLTMAKI 135 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~k-P~~~~~l 135 (145)
......+.+.. ..+|.|++|......+--++...++... ..+..++=....++..+..+++.|+++++.. --+.++.
T Consensus 21 ~sp~~~e~~a~-~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea 99 (249)
T TIGR03239 21 GNPITTEVLGL-AGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEA 99 (249)
T ss_pred CCcHHHHHHHh-cCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHH
Confidence 33455555554 3599999999998888777777776643 2344444456678888999999999998654 4455666
Q ss_pred HHHHHH
Q 045936 136 VPLLEE 141 (145)
Q Consensus 136 ~~~l~~ 141 (145)
...++.
T Consensus 100 ~~~v~a 105 (249)
T TIGR03239 100 ERAVAA 105 (249)
T ss_pred HHHHHH
Confidence 666543
No 135
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.22 E-value=2 Score=29.97 Aligned_cols=86 Identities=9% Similarity=0.049 Sum_probs=58.1
Q ss_pred HHHHHHHHHHh-cCCeE-EEecCHHHHHHHHhcCCCccEEEEeCC-------CCCCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 38 IRRIHSMILKS-VGFKV-EVAENGKEAVDLFRTGAKFHIVFIDME-------MPVMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 38 ~~~~l~~~l~~-~g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~-------~~~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
....+....++ .+..+ ..+.+.+++...... .+|++.+... .......+.++.+++.. +.|++...+-
T Consensus 106 ~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~--G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-~iPvia~GGI 182 (221)
T PRK01130 106 TLAELVKRIKEYPGQLLMADCSTLEEGLAAQKL--GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV-GCPVIAEGRI 182 (221)
T ss_pred CHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc--CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-CCCEEEECCC
Confidence 33445555555 56554 467788888666554 4888765321 11223467888887754 6888887777
Q ss_pred CChHHHHHHHHhcccEEe
Q 045936 109 NSETEREVFMQAGLDLCY 126 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~~l 126 (145)
.+.+....++..|++.++
T Consensus 183 ~t~~~~~~~l~~GadgV~ 200 (221)
T PRK01130 183 NTPEQAKKALELGAHAVV 200 (221)
T ss_pred CCHHHHHHHHHCCCCEEE
Confidence 788999999999999975
No 136
>PRK15320 transcriptional activator SprB; Provisional
Probab=93.16 E-value=0.52 Score=32.70 Aligned_cols=98 Identities=13% Similarity=-0.027 Sum_probs=68.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhc--CCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 28 FALVVDDDPMIRRIHSMILKSV--GFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~--g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
.|++.+++=...-.+.+++++. |..|.++.+....+..++. .||.+++=.--|. .-+=+...+++.-++-|++++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~--~p~a~lil~l~p~-eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD--MPDAGLILALNPH-EHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh--CCCceEEEeeCch-hHHHHHHHHHHHcCCCceEEE
Confidence 5788888888888899998765 5667788888889988875 4775554332333 334455667788888999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeC
Q 045936 106 TSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~k 128 (145)
++.---...--..-.|+.+|+.|
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH
Confidence 88665444444455676666543
No 137
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.11 E-value=2.1 Score=29.92 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=58.8
Q ss_pred HHHHHHHHhcC-CeEEEecCHHHHHHHHhc--CCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHH
Q 045936 40 RIHSMILKSVG-FKVEVAENGKEAVDLFRT--GAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREV 116 (145)
Q Consensus 40 ~~l~~~l~~~g-~~v~~~~~~~~~l~~l~~--~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~ 116 (145)
..+...++..+ ..|....+.++++...+. ...++.| ++.+..-...+.++.+++.++ --+|--.+--+++....
T Consensus 4 ~~~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~I--EITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~ 80 (211)
T COG0800 4 MKILSKLKAQPVVPVIRGDDVEEALPLAKALIEGGIPAI--EITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQ 80 (211)
T ss_pred hHHHHHHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCeE--EEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHH
Confidence 34455666666 346678888887765432 0224444 334445567888888888877 22333344557778888
Q ss_pred HHHhcccEEeeCCCCHHHHHHH
Q 045936 117 FMQAGLDLCYTKPLTMAKIVPL 138 (145)
Q Consensus 117 ~~~~g~~~~l~kP~~~~~l~~~ 138 (145)
+..+|++-.+...++++-+..+
T Consensus 81 a~~aGa~fiVsP~~~~ev~~~a 102 (211)
T COG0800 81 AIAAGAQFIVSPGLNPEVAKAA 102 (211)
T ss_pred HHHcCCCEEECCCCCHHHHHHH
Confidence 8888887666555555544433
No 138
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=92.66 E-value=3.2 Score=36.41 Aligned_cols=99 Identities=12% Similarity=0.090 Sum_probs=69.0
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhcCCeEEEec---CHHHHHHHHhcCCCccEEEEeCCCCCC-C-HHHHHHHHHhhCC
Q 045936 28 FALVV----DDDPMIRRIHSMILKSVGFKVEVAE---NGKEAVDLFRTGAKFHIVFIDMEMPVM-D-GIEATKAMRAMKV 98 (145)
Q Consensus 28 ~vlii----~~~~~~~~~l~~~l~~~g~~v~~~~---~~~~~l~~l~~~~~~dlil~d~~~~~~-~-g~~~~~~l~~~~~ 98 (145)
+|++. |-|..-...+..+|+.+||+|.... ..++.++.+.+ ..+|+|-+...+... . ..++++.|++.++
T Consensus 734 kVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e-~~~diVgLS~Lmt~t~~~m~~vi~~L~~~g~ 812 (1178)
T TIGR02082 734 KIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKD-HNADVIGLSGLITPSLDEMKEVAEEMNRRGI 812 (1178)
T ss_pred eEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-hCCCEEEEcCcccccHHHHHHHHHHHHhcCC
Confidence 56665 5555555666778899999987432 56778888877 579999998776543 3 4568899999888
Q ss_pred CCcEEEEecCCChHHHHHH---HHhcccEEee
Q 045936 99 ESKIVGVTSRNSETEREVF---MQAGLDLCYT 127 (145)
Q Consensus 99 ~~~ii~lt~~~~~~~~~~~---~~~g~~~~l~ 127 (145)
.++|++-....+......- ...|++.|-.
T Consensus 813 ~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~ 844 (1178)
T TIGR02082 813 TIPLLIGGAATSKTHTAVKIAPIYKGPVVYVL 844 (1178)
T ss_pred CceEEEeccccchhHHHhhhhhhccCCeEEec
Confidence 8888877766666555431 1237777753
No 139
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.64 E-value=0.99 Score=35.24 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 59 GKEAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 59 ~~~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
.+.+...+.. .+|+|.+|..... ....+.++++++.+|+.+|++ .+....+....+.++|++.+
T Consensus 226 ~~r~~~L~~a--G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 226 KERAEALVKA--GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 3445545543 4899999986654 345678999998888888765 66778888889999999887
No 140
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.64 E-value=2.6 Score=29.76 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=56.0
Q ss_pred HHHHHHhcC-CeEEEecCHHHHHHHHhcC--CCccEEEEeCCCCCCCHHHHHHHHHhh----CCCCcEEEEecCCChHHH
Q 045936 42 HSMILKSVG-FKVEVAENGKEAVDLFRTG--AKFHIVFIDMEMPVMDGIEATKAMRAM----KVESKIVGVTSRNSETER 114 (145)
Q Consensus 42 l~~~l~~~g-~~v~~~~~~~~~l~~l~~~--~~~dlil~d~~~~~~~g~~~~~~l~~~----~~~~~ii~lt~~~~~~~~ 114 (145)
+...|.+.+ ..|....+.+++...++.- ..+. .++..+..-++.+.++.|++. +|+ -++-..+-.+.+..
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~-~~vGaGTVl~~e~a 84 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPG-MILGVGSIVDAATA 84 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCC-eEEeeEeCcCHHHH
Confidence 344555566 3466777788777654421 1233 445555556678888887643 232 23445666788888
Q ss_pred HHHHHhcccEEeeCCCCHHHHHHHH
Q 045936 115 EVFMQAGLDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 115 ~~~~~~g~~~~l~kP~~~~~l~~~l 139 (145)
..+.++|++-++. |....++.+..
T Consensus 85 ~~a~~aGA~FiVs-P~~~~~v~~~~ 108 (222)
T PRK07114 85 ALYIQLGANFIVT-PLFNPDIAKVC 108 (222)
T ss_pred HHHHHcCCCEEEC-CCCCHHHHHHH
Confidence 8889999865554 55555555443
No 141
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.59 E-value=1.1 Score=34.52 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=46.7
Q ss_pred HHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 61 EAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 61 ~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+-..+.. ..|+|.+|...+. ....++++++++..|+.++ ++......+....+.++|++...
T Consensus 157 ~v~~lv~a--GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~v-i~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 157 RVEELVKA--HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDL-IAGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHhc--CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcE-EEEecCCHHHHHHHHHcCCCEEE
Confidence 34334443 4999999998764 4556889999998887764 45566777888889999999864
No 142
>PF13941 MutL: MutL protein
Probab=92.58 E-value=4.2 Score=31.95 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=73.1
Q ss_pred CCCCCCcEEEEEeCCHHHHHH-HHHHHHhcCCe---EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC---HHHHHHHH
Q 045936 21 VSKNRPYFALVVDDDPMIRRI-HSMILKSVGFK---VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD---GIEATKAM 93 (145)
Q Consensus 21 ~~~~~~~~vlii~~~~~~~~~-l~~~l~~~g~~---v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~---g~~~~~~l 93 (145)
.+..++++++++.=.+..... -+..-..-|-. +....-.++.++.++. ..||+||+-=--.+.+ .+...+.|
T Consensus 71 SSAaGGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~-~~PDiILLaGGtDgG~~~~il~nA~~L 149 (457)
T PF13941_consen 71 SSAAGGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIRE-IRPDIILLAGGTDGGNKEVILHNAEML 149 (457)
T ss_pred CCCCCcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhc-cCCCEEEEeCCccCCchHHHHHHHHHH
Confidence 666778898888877665533 33333334533 3345556667777876 6899999864444433 35666777
Q ss_pred HhhCCCCcEEEEecCCChHHHHHHHH-hcccEEeeCCC
Q 045936 94 RAMKVESKIVGVTSRNSETEREVFMQ-AGLDLCYTKPL 130 (145)
Q Consensus 94 ~~~~~~~~ii~lt~~~~~~~~~~~~~-~g~~~~l~kP~ 130 (145)
.+....+|||+-.+....+.+...+. .|..-+++.++
T Consensus 150 a~~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV 187 (457)
T PF13941_consen 150 AEANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENV 187 (457)
T ss_pred HhCCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 77777889888877777777777777 67777776655
No 143
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.51 E-value=1.6 Score=26.90 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=56.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCH-HHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENG-KEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~-~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..+.++|.++..... +...|+.+...+-. .+.++.+.- ...+.+++...- +.....++..+++.++..++++.
T Consensus 22 ~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i-~~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 22 IDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGI-EKADAVVILTDD-DEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp SEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTG-GCESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCc-cccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEEE
Confidence 468888888876444 33456665543322 334444443 357878776542 23345677778887887777655
Q ss_pred ecCCChHHHHHHHHhcccEEee
Q 045936 106 TSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.. ++.....+...|++..+.
T Consensus 96 ~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 96 VN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp ES--SHHHHHHHHHTT-SEEEE
T ss_pred EC--CHHHHHHHHHCCcCEEEC
Confidence 44 455666777889987653
No 144
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.50 E-value=1.4 Score=34.72 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=50.3
Q ss_pred cCHHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 57 ENGKEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 57 ~~~~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+..+-+..+.. ...|.|.+|....... -.+.+++|+..+|++++|+ ......+....+.++|++.+-
T Consensus 224 ~~~~~ra~~Lv~-aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLD-AGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ccHHHHHHHHHH-hCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 344555555554 3589999998875433 4678999999888888775 557788888889999998763
No 145
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.38 E-value=1.2 Score=32.20 Aligned_cols=58 Identities=21% Similarity=0.084 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhhCCCCcEEEEecC------CChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 85 DGIEATKAMRAMKVESKIVGVTSR------NSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 85 ~g~~~~~~l~~~~~~~~ii~lt~~------~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
..++.++.+|+..+++|+++++=. .-......+.++|+++.+...+.+++....+...
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 356777777766677888766522 3345678889999999998888888777666543
No 146
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.23 E-value=1.3 Score=33.31 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=43.1
Q ss_pred CccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 71 KFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 71 ~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
.+|+|++|....... -.+.++++|+.+|+.+| +..+....+....+..+|||..
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~v-IaGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREAWPDKTI-CAGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcE-EEecccCHHHHHHHHHcCCCEE
Confidence 589999998776544 56799999999888765 4666777778888999999985
No 147
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.19 E-value=2.6 Score=29.26 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=34.4
Q ss_pred eCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHH
Q 045936 78 DMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPL 138 (145)
Q Consensus 78 d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 138 (145)
+..+..-..++.++.+++.++. -+|-..+-.+.+....+.++|++-.+ .|...+++.+.
T Consensus 34 Eit~~tp~a~~~I~~l~~~~~~-~~vGAGTVl~~e~a~~ai~aGA~Fiv-SP~~~~~vi~~ 92 (201)
T PRK06015 34 EITLRTPAALDAIRAVAAEVEE-AIVGAGTILNAKQFEDAAKAGSRFIV-SPGTTQELLAA 92 (201)
T ss_pred EEeCCCccHHHHHHHHHHHCCC-CEEeeEeCcCHHHHHHHHHcCCCEEE-CCCCCHHHHHH
Confidence 3344445567777777766653 23444555677777777777775444 45555554443
No 148
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.13 E-value=3.9 Score=31.77 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=56.4
Q ss_pred CcEEEEEeCCHHHH---HHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC-CCCC--HHH-HHHHHHhh-C
Q 045936 26 PYFALVVDDDPMIR---RIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM-PVMD--GIE-ATKAMRAM-K 97 (145)
Q Consensus 26 ~~~vlii~~~~~~~---~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~-~~~~--g~~-~~~~l~~~-~ 97 (145)
+.+|.+++-++... ..+..+-...|+.+..+.+..+....+.....+|+||+|.-= ...+ ..+ +.+.++.. .
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~ 330 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGE 330 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCC
Confidence 46788888887532 334444555676666666666666655543468999999631 1111 222 33333422 2
Q ss_pred CCCcEEEEecCCChHHHHHHH----HhcccEE-eeC
Q 045936 98 VESKIVGVTSRNSETEREVFM----QAGLDLC-YTK 128 (145)
Q Consensus 98 ~~~~ii~lt~~~~~~~~~~~~----~~g~~~~-l~k 128 (145)
+....+++++.........+. ..+.+.+ ++|
T Consensus 331 ~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TK 366 (424)
T PRK05703 331 PIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTK 366 (424)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 333466777766655544432 3355454 455
No 149
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=92.09 E-value=2.5 Score=28.38 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=48.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc--CCeEEEe-------cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV--GFKVEVA-------ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~--g~~v~~~-------~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+.+|.++...+...+.+...+++. |..++.+ .+.++.++.+.. ..||+|++.+..|.+. .++...++.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~-~~pdiv~vglG~PkQE--~~~~~~~~~ 122 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA-SGADILFVGLGAPKQE--LWIARHKDR 122 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH-cCCCEEEEECCCCHHH--HHHHHHHHH
Confidence 578999999999999988888654 4555432 123335777776 5799999999888765 344555554
Q ss_pred C
Q 045936 97 K 97 (145)
Q Consensus 97 ~ 97 (145)
.
T Consensus 123 l 123 (171)
T cd06533 123 L 123 (171)
T ss_pred C
Confidence 4
No 150
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.93 E-value=2.3 Score=31.28 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=62.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----cCC--eE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 28 FALVVDDDPMIRRIHSMILKS----VGF--KV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~----~g~--~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
.|||-|++-.....+...++. .++ .+ +.+++.+++.+.+.. .+|+|++|- |...+--+.++.++. .
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a--gaDiImLDn-mspe~l~~av~~~~~----~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA--GADIIMLDN-MSLEQIEQAITLIAG----R 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc--CCCEEEECC-CCHHHHHHHHHHhcC----c
Confidence 588888887776555555432 232 23 388999999999976 389999993 333333344444432 2
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.++-.++.-+.+........|+|..-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 35667788888899999999998753
No 151
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=91.85 E-value=1.7 Score=31.33 Aligned_cols=58 Identities=21% Similarity=0.104 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhhCCCCcEEEEecCCC------hHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 85 DGIEATKAMRAMKVESKIVGVTSRNS------ETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 85 ~g~~~~~~l~~~~~~~~ii~lt~~~~------~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+.++.++.+++.....|+++++-... ......+.++|+++++......++....++.+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 34566777766545677664444332 45677778888888877777766666555443
No 152
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=91.85 E-value=3 Score=28.70 Aligned_cols=85 Identities=9% Similarity=0.010 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCeE-EEecCHHHHHHHHhcCCCccEEEEeC------CCCCCCHHHHHHHHHhhCCCCcEEEEecCCCh
Q 045936 39 RRIHSMILKSVGFKV-EVAENGKEAVDLFRTGAKFHIVFIDM------EMPVMDGIEATKAMRAMKVESKIVGVTSRNSE 111 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~------~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~ 111 (145)
...+-..++..+..+ .-+++.+|+....+. .+|+|=.-+ .....+.+++++.|.+. ..|+|.=.....+
T Consensus 81 l~~li~~i~~~~~l~MADist~ee~~~A~~~--G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~--~~pvIaEGri~tp 156 (192)
T PF04131_consen 81 LEELIREIKEKYQLVMADISTLEEAINAAEL--GFDIIGTTLSGYTPYTKGDGPDFELVRELVQA--DVPVIAEGRIHTP 156 (192)
T ss_dssp HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT--T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT--TSEEEEESS--SH
T ss_pred HHHHHHHHHHhCcEEeeecCCHHHHHHHHHc--CCCEEEcccccCCCCCCCCCCCHHHHHHHHhC--CCcEeecCCCCCH
Confidence 445555555555333 278999999998876 388875332 11133578899999875 6787777888899
Q ss_pred HHHHHHHHhcccEEee
Q 045936 112 TEREVFMQAGLDLCYT 127 (145)
Q Consensus 112 ~~~~~~~~~g~~~~l~ 127 (145)
+....+++.|++..+.
T Consensus 157 e~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 157 EQAAKALELGAHAVVV 172 (192)
T ss_dssp HHHHHHHHTT-SEEEE
T ss_pred HHHHHHHhcCCeEEEE
Confidence 9999999999999753
No 153
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=91.84 E-value=3.2 Score=28.98 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=50.3
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCC---------CCHHHHHHHHHhhC-CCCcEEEEecCCChHHHHH---HHHhcccE
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPV---------MDGIEATKAMRAMK-VESKIVGVTSRNSETEREV---FMQAGLDL 124 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~---------~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~---~~~~g~~~ 124 (145)
+..+.++.... ..+|.|++|+.-.. .+-.+++..++... ..+.+++=.+..+...... ++..|+++
T Consensus 9 ~~~~~~~~a~~-~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~g 87 (221)
T PF03328_consen 9 NSPKMLEKAAA-SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGADG 87 (221)
T ss_dssp TSHHHHHHHHT-TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSSE
T ss_pred CCHHHHHHHHh-cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCCe
Confidence 34444555554 46999999997755 33445555555422 2344554455555555566 89999999
Q ss_pred E-eeCCCCHHHHHHHHHHH
Q 045936 125 C-YTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 125 ~-l~kP~~~~~l~~~l~~~ 142 (145)
+ ++|--+.+++....+.+
T Consensus 88 I~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 88 IVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp EEETT--SHHHHHHHHHHH
T ss_pred eeccccCcHHHHHHHHHHH
Confidence 7 45566677777666543
No 154
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=91.64 E-value=3.4 Score=36.44 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=66.9
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhcCCeEEEec---CHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCC
Q 045936 28 FALVV----DDDPMIRRIHSMILKSVGFKVEVAE---NGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKV 98 (145)
Q Consensus 28 ~vlii----~~~~~~~~~l~~~l~~~g~~v~~~~---~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~ 98 (145)
+|++. |-+..-...+..+|+.+||+|+... ..++.++.+.+ ..+|+|.+...+... ...++++.|++.++
T Consensus 753 kvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e-~~~diVgLS~L~t~s~~~m~~~i~~L~~~g~ 831 (1229)
T PRK09490 753 KILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKE-ENADIIGLSGLITPSLDEMVHVAKEMERQGF 831 (1229)
T ss_pred eEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-hCCCEEEEcCcchhhHHHHHHHHHHHHhcCC
Confidence 56666 5666666677778899999987432 56778888877 579999998776543 24568899998888
Q ss_pred CCcEEEEecCCChHHHHHH--HH-hcccEEe
Q 045936 99 ESKIVGVTSRNSETEREVF--MQ-AGLDLCY 126 (145)
Q Consensus 99 ~~~ii~lt~~~~~~~~~~~--~~-~g~~~~l 126 (145)
.++|++-.+..+......- -. .|++.|.
T Consensus 832 ~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~ 862 (1229)
T PRK09490 832 TIPLLIGGATTSKAHTAVKIAPNYSGPVVYV 862 (1229)
T ss_pred CCeEEEEeeccchhhhhhhhhhcccCCcEEe
Confidence 8888877666554331111 11 2777665
No 155
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=91.49 E-value=4.2 Score=29.73 Aligned_cols=86 Identities=20% Similarity=0.153 Sum_probs=57.5
Q ss_pred EEEecCHHHHHHHHhcCCCccEEEEeCC-----------------------------------CCCCCHHHHHHHHHhhC
Q 045936 53 VEVAENGKEAVDLFRTGAKFHIVFIDME-----------------------------------MPVMDGIEATKAMRAMK 97 (145)
Q Consensus 53 v~~~~~~~~~l~~l~~~~~~dlil~d~~-----------------------------------~~~~~g~~~~~~l~~~~ 97 (145)
..-+++.+|++...+.+ +|+|=.-+. -....++++++.+++..
T Consensus 116 MAD~stleEal~a~~~G--ad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~ 193 (283)
T cd04727 116 VCGARNLGEALRRISEG--AAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG 193 (283)
T ss_pred EccCCCHHHHHHHHHCC--CCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc
Confidence 33688999999988763 777654330 01224678888887754
Q ss_pred CCCcEE--EEecCCChHHHHHHHHhcccEEe-----eCCCCHHHHHHHHHH
Q 045936 98 VESKIV--GVTSRNSETEREVFMQAGLDLCY-----TKPLTMAKIVPLLEE 141 (145)
Q Consensus 98 ~~~~ii--~lt~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~l~~ 141 (145)
..|++ ...+-..++....+++.|++.++ .+.-++.+....+.+
T Consensus 194 -~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ 243 (283)
T cd04727 194 -RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVE 243 (283)
T ss_pred -CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHH
Confidence 47887 56666689999999999999985 333345554444433
No 156
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=91.44 E-value=2 Score=32.46 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 59 GKEAVDLFRTGAKFHIVFIDMEMPVM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 59 ~~~~l~~l~~~~~~dlil~d~~~~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
..+-...+-+ ...|++++|...... .-.+.++.+|+.+|+++|| ..+....+....+.++||+....
T Consensus 109 ~~er~~~L~~-agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 109 DFERAEALVE-AGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKV 176 (352)
T ss_dssp HHHHHHHHHH-TT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHH-cCCCEEEccccCccHHHHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEE
Confidence 3444444444 358999999766543 3567999999999988776 56677778888899999998753
No 157
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=91.40 E-value=0.61 Score=31.85 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=45.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC--CCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM--PVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~--~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
||++|+.......+.++|+..|+.+....+.+--++.+.. ..||.|++.--- +...+. ....++......|++-++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~iilsgGP~~~~~~~~-~~~~i~~~~~~~PiLGIC 79 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ-LAPSHLVISPGPCTPNEAGI-SLAVIRHFADKLPILGVC 79 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh-cCCCeEEEcCCCCChHhCCC-chHHHHHhcCCCCEEEEC
Confidence 7999999999999999999999887755543212233343 357877664321 111111 123333333357777654
Q ss_pred c
Q 045936 107 S 107 (145)
Q Consensus 107 ~ 107 (145)
-
T Consensus 80 ~ 80 (191)
T PRK06774 80 L 80 (191)
T ss_pred H
Confidence 3
No 158
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=91.22 E-value=1.3 Score=30.27 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=44.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC--CCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM--PVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~--~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
||++|........+..+|+..|+.+....+....++.+.. ..||.|++.--- +...+. ..+.++......|++-++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iilsgGpg~p~~~~~-~~~~i~~~~~~~PvLGIC 79 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA-LLPLLIVISPGPCTPNEAGI-SLEAIRHFAGKLPILGVC 79 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh-cCCCEEEEcCCCCChhhcch-hHHHHHHhccCCCEEEEC
Confidence 8999999999999999999989886654432211233333 348866653211 111122 234444433457777654
Q ss_pred c
Q 045936 107 S 107 (145)
Q Consensus 107 ~ 107 (145)
-
T Consensus 80 ~ 80 (188)
T TIGR00566 80 L 80 (188)
T ss_pred H
Confidence 3
No 159
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=91.20 E-value=3.4 Score=28.09 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=48.7
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCC--------CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPV--------MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~--------~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+++.+++.+.... .+|.+.++.-.+. ..|++.++++.+..+.+|++++.+- +.+....++..|++++.
T Consensus 102 s~h~~~e~~~a~~~--g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 102 STHNLEELAEAEAE--GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVA 178 (196)
T ss_pred eCCCHHHHHHHhHc--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 67788888765543 4899887654331 2378888888776566887766554 57778888899998863
No 160
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=91.10 E-value=3.6 Score=34.03 Aligned_cols=101 Identities=12% Similarity=0.159 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHHHhhC--CCCcEEEEecCCC
Q 045936 40 RIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMP-----VMDGIEATKAMRAMK--VESKIVGVTSRNS 110 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~-----~~~g~~~~~~l~~~~--~~~~ii~lt~~~~ 110 (145)
......|+..||.+. .+.++...+..+.. -++|.|=+|-.+- +.....+++.+.... .++. ++..+-.+
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~-l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-via~gVe~ 758 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLVS-LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLT-VVAEGVET 758 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHhh-CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCe-EEEEcCCC
Confidence 445556788898875 46677777777776 6799999886442 122344566665432 2333 45677788
Q ss_pred hHHHHHHHHhcccE----EeeCCCCHHHHHHHHHHH
Q 045936 111 ETEREVFMQAGLDL----CYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 111 ~~~~~~~~~~g~~~----~l~kP~~~~~l~~~l~~~ 142 (145)
.+....+.+.|++. |+.||.+.++|...|++.
T Consensus 759 ~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred HHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 88888899999864 588999999999988764
No 161
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.07 E-value=4.8 Score=29.52 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=61.6
Q ss_pred EEEEEeCCHHHH--H--HHHHHHH----hcCC--eE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALVVDDDPMIR--R--IHSMILK----SVGF--KV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii~~~~~~~--~--~l~~~l~----~~g~--~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
.|||-|++-... . .+...++ ..++ .+ +.+++.+++.+.+.. .+|+|++| +++..+--+.+..++.
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~--gaDiImLD-n~s~e~l~~av~~~~~- 236 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA--GVDTIMLD-NFSLDDLREGVELVDG- 236 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc--CCCEEEEC-CCCHHHHHHHHHHhCC-
Confidence 588888887653 1 2444443 3343 33 489999999999876 48999998 3333333344444432
Q ss_pred CCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 97 KVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
...+-.++.-+.+........|+|..-
T Consensus 237 ---~~~leaSGgI~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 237 ---RAIVEASGNVNLNTVGAIASTGVDVIS 263 (281)
T ss_pred ---CeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 236777888899999998899998764
No 162
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=91.06 E-value=2.3 Score=31.18 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=62.6
Q ss_pred EEEEeCCHHHHH---HHHHHH----HhcC-Ce-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCC
Q 045936 29 ALVVDDDPMIRR---IHSMIL----KSVG-FK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVE 99 (145)
Q Consensus 29 vlii~~~~~~~~---~l~~~l----~~~g-~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~ 99 (145)
|||-|++-.... .+...+ +..+ .. .+.+.+.+++.+.+.. .+|+|++| +|....--+..+.+++..+.
T Consensus 160 vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a--gaDiI~LD-n~~~e~l~~av~~~~~~~~~ 236 (284)
T PRK06096 160 ILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA--QPDVLQLD-KFSPQQATEIAQIAPSLAPH 236 (284)
T ss_pred hhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc--CCCEEEEC-CCCHHHHHHHHHHhhccCCC
Confidence 666666654443 233333 2223 22 3488999999999986 38999998 45544445556655544443
Q ss_pred CcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 100 SKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
..+-.++.-+.+........|+|.+..
T Consensus 237 -~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 237 -CTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred -eEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 356778888999999999999988643
No 163
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.82 E-value=4.8 Score=32.84 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=35.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 71 KFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 71 ~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..+++++-.+-+ ......+...|+.+|+.++++-+ .+........+.|++...
T Consensus 464 ~A~~vvv~~~d~-~~n~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 464 KAEVLINAIDDP-QTSLQLVELVKEHFPHLQIIARA--RDVDHYIRLRQAGVEKPE 516 (621)
T ss_pred cCCEEEEEeCCH-HHHHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHCCCCEEe
Confidence 456666654322 23456777888888888876544 455667777889999764
No 164
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.79 E-value=4.8 Score=31.65 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC----HHHHH---HHHHhhCCCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD----GIEAT---KAMRAMKVESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~----g~~~~---~~l~~~~~~~~ii~lt 106 (145)
-|....+.+...|...||.++. . ....|+++++.-.-..+ ....+ +.+++..|..+| +++
T Consensus 35 ~N~~dse~~~~~l~~~G~~~~~-----------~-~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~i-vvg 101 (467)
T PRK14329 35 MNFADSEIVASILQMAGYNTTE-----------N-LEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLIV-GVL 101 (467)
T ss_pred CcHHHHHHHHHHHHHCcCEECC-----------C-cccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcEE-EEE
Confidence 4556668888999889988753 1 23589999987443322 33344 444555566544 455
Q ss_pred cCCChHHHHHHHHh-cccEEeeCCCCHHHHHHHHHHH
Q 045936 107 SRNSETEREVFMQA-GLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 107 ~~~~~~~~~~~~~~-g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+..........+.. +.-+++..+-....+...++..
T Consensus 102 Gc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~ 138 (467)
T PRK14329 102 GCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEV 138 (467)
T ss_pred CChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHH
Confidence 55444444444444 4357777888888887777654
No 165
>PRK13566 anthranilate synthase; Provisional
Probab=90.78 E-value=1.9 Score=35.77 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=49.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC--C-CCCHHHHHHHHHhhCC
Q 045936 22 SKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM--P-VMDGIEATKAMRAMKV 98 (145)
Q Consensus 22 ~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~--~-~~~g~~~~~~l~~~~~ 98 (145)
.+..+.+|+++|........+.++|++.|+.+..+...... ..+.. ..||.||+.-.- + +....++++... ..
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~~~-~~~DgVVLsgGpgsp~d~~~~~lI~~a~--~~ 597 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EMLDR-VNPDLVVLSPGPGRPSDFDCKATIDAAL--AR 597 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHhhh-cCCCEEEECCCCCChhhCCcHHHHHHHH--HC
Confidence 44456799999999888999999999999887755543221 22222 358987763111 1 112233444332 23
Q ss_pred CCcEEEEec
Q 045936 99 ESKIVGVTS 107 (145)
Q Consensus 99 ~~~ii~lt~ 107 (145)
+.||+-++-
T Consensus 598 ~iPILGICl 606 (720)
T PRK13566 598 NLPIFGVCL 606 (720)
T ss_pred CCcEEEEeh
Confidence 577776644
No 166
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=90.74 E-value=4.8 Score=29.03 Aligned_cols=99 Identities=10% Similarity=0.078 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeC-CCCC-CCHHHHHHHHHhhCCC-CcEEEEecCCCh
Q 045936 36 PMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDM-EMPV-MDGIEATKAMRAMKVE-SKIVGVTSRNSE 111 (145)
Q Consensus 36 ~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~-~~~~-~~g~~~~~~l~~~~~~-~~ii~lt~~~~~ 111 (145)
+.....+....+..|.. ++.+++.+++.+.... .+|+|-+.- ++.. ...++....+....|. .++|..++-.++
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~--gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ 223 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALKL--GAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTP 223 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc--CCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCH
Confidence 44555566666677877 4588999998776654 478776542 1111 1125556666655453 578888888899
Q ss_pred HHHHHHHHhcccEEe-----eCCCCHHHHH
Q 045936 112 TEREVFMQAGLDLCY-----TKPLTMAKIV 136 (145)
Q Consensus 112 ~~~~~~~~~g~~~~l-----~kP~~~~~l~ 136 (145)
+....+...|++.++ .++-++.+..
T Consensus 224 ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~ 253 (260)
T PRK00278 224 EDLKRLAKAGADAVLVGESLMRADDPGAAL 253 (260)
T ss_pred HHHHHHHHcCCCEEEECHHHcCCCCHHHHH
Confidence 999999999999975 5555554443
No 167
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=90.56 E-value=6 Score=30.46 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCC----CHHHHHHHHHhhCCCCcEEEEecCCC
Q 045936 35 DPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM----DGIEATKAMRAMKVESKIVGVTSRNS 110 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~----~g~~~~~~l~~~~~~~~ii~lt~~~~ 110 (145)
|....+.+...|...||..+.. ...+|+|+++.-.... .+++.++.+++..|..+|+ +++...
T Consensus 9 N~~ds~~~~~~l~~~g~~~~~~------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vv-vgGc~a 75 (414)
T TIGR01579 9 NQYESESLKNQLIQKGYEVVPD------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKII-VTGCYA 75 (414)
T ss_pred CHHHHHHHHHHHHHCcCEECCC------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEE-EECCcc
Confidence 4455677888888888875421 1358999998644332 3677888888877766544 555544
Q ss_pred hHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 111 ETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 111 ~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
......++.....+++..+-....+...++.
T Consensus 76 ~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~ 106 (414)
T TIGR01579 76 QSNPKELADLKDVDLVLGNKEKDKINKLLSL 106 (414)
T ss_pred ccCHHHHhcCCCCcEEECCCCHHHHHHHHHH
Confidence 4444444455445566677776666666544
No 168
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.52 E-value=4.4 Score=28.22 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=57.0
Q ss_pred HHHHHHHHhcC-Ce-EEEecCHHHHHHHHhcCCCccEEEEeCC-C------CCCCHHHHHHHHHhhCCCCcEEEEecCCC
Q 045936 40 RIHSMILKSVG-FK-VEVAENGKEAVDLFRTGAKFHIVFIDME-M------PVMDGIEATKAMRAMKVESKIVGVTSRNS 110 (145)
Q Consensus 40 ~~l~~~l~~~g-~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~-~------~~~~g~~~~~~l~~~~~~~~ii~lt~~~~ 110 (145)
..+...++..| .. +..+.+.+++...... .+|.+.+... . .....++.++.+++.. +.|+++..+-.+
T Consensus 112 ~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~--G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~ 188 (219)
T cd04729 112 AELIKRIHEEYNCLLMADISTLEEALNAAKL--GFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-GIPVIAEGRINS 188 (219)
T ss_pred HHHHHHHHHHhCCeEEEECCCHHHHHHHHHc--CCCEEEccCccccccccCCCCCCHHHHHHHHHhc-CCCEEEeCCCCC
Confidence 33444444444 44 3467788888776654 3887754321 1 1223567888887755 688888887778
Q ss_pred hHHHHHHHHhcccEEee
Q 045936 111 ETEREVFMQAGLDLCYT 127 (145)
Q Consensus 111 ~~~~~~~~~~g~~~~l~ 127 (145)
.+....++..|++.++.
T Consensus 189 ~~~~~~~l~~GadgV~v 205 (219)
T cd04729 189 PEQAAKALELGADAVVV 205 (219)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 89999999999999764
No 169
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=90.49 E-value=6.1 Score=32.30 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=69.1
Q ss_pred EEEEEeCCHHHHH-----HHHHHHHhcCCeEE---EecCHHHHHHHHhcCCCcc-EEEEeCCCC-CCCHHHHHHHHHhhC
Q 045936 28 FALVVDDDPMIRR-----IHSMILKSVGFKVE---VAENGKEAVDLFRTGAKFH-IVFIDMEMP-VMDGIEATKAMRAMK 97 (145)
Q Consensus 28 ~vlii~~~~~~~~-----~l~~~l~~~g~~v~---~~~~~~~~l~~l~~~~~~d-lil~d~~~~-~~~g~~~~~~l~~~~ 97 (145)
+|.++---+.... .-.++|..-||.+. .+.+.+++...... ...+ +|||..+-. ...+.++++.||...
T Consensus 496 ~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~-sga~i~viCssD~~Y~~~a~~~~~al~~ag 574 (619)
T TIGR00642 496 KVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKK-AGAQVAVLCSSDKVYAQQGLEVAKALKAAG 574 (619)
T ss_pred eEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHh-cCCCEEEEeCCCcchHHHHHHHHHHHHhCC
Confidence 5666554333333 33455566678766 45678888777765 3456 445544322 224667888998876
Q ss_pred CCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 98 VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 98 ~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.. .+++++.... ......+|+|+|+.--.+.-+.+..+++.
T Consensus 575 ~~--~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~~~~ 615 (619)
T TIGR00642 575 AK--ALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSSTLDI 615 (619)
T ss_pred CC--EEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHHHHH
Confidence 63 5666665543 33478899999998887777666666543
No 170
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=90.45 E-value=3.6 Score=28.54 Aligned_cols=92 Identities=11% Similarity=0.206 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCCC-----CCHHHHHHHHHhhC-CCCcEEEEecCCChH
Q 045936 41 IHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMPV-----MDGIEATKAMRAMK-VESKIVGVTSRNSET 112 (145)
Q Consensus 41 ~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~-----~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~ 112 (145)
.....|+..|+.+. -+..+...+..+.. -+||.|=+|..+-. .....+++.+.... ....-++..+-.+.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~-l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~ 215 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR-LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETPE 215 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh-CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCCCHH
Confidence 44566678898865 35555666667765 57999999965421 11334555554432 222345677788888
Q ss_pred HHHHHHHhcccE----EeeCCCCHH
Q 045936 113 EREVFMQAGLDL----CYTKPLTMA 133 (145)
Q Consensus 113 ~~~~~~~~g~~~----~l~kP~~~~ 133 (145)
....+...|++. |+.||.+.+
T Consensus 216 ~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 216 QLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHcCCCEEeeceeccCCCCC
Confidence 888899999864 467776543
No 171
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.42 E-value=2.9 Score=30.78 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=61.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---cC--CeE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 28 FALVVDDDPMIRRIHSMILKS---VG--FKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~---~g--~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
.|||-|++-.....+...++. .. ..+ +.+++.+++.+.+.. .+|+|++|- |+...--+.++.++ ...
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a--GaDiImLDn-mspe~l~~av~~~~----~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH--GAQSVLLDN-FTLDMMREAVRVTA----GRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc--CCCEEEECC-CCHHHHHHHHHhhc----CCe
Confidence 588888887666544444432 21 233 488999999999976 389999993 43333333444432 224
Q ss_pred EEEEecCCChHHHHHHHHhcccEEe
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
++-.++.-+.+........|+|..-
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRIS 275 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 5667888888889999999998764
No 172
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=90.22 E-value=3.1 Score=30.32 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=49.5
Q ss_pred EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 53 VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 53 v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
-+.+.+.+++.+.... .+|.|.+|-..| .+--++.+.++...+++|+++. +.-+.+........|++.+..
T Consensus 187 gVev~t~eea~~A~~~--gaD~I~ld~~~p-~~l~~~~~~~~~~~~~i~i~As-GGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 187 VVEVDSLEEALAAAEA--GADILQLDKFSP-EELAELVPKLRSLAPPVLLAAA-GGINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEEcCCHHHHHHHHHc--CCCEEEECCCCH-HHHHHHHHHHhccCCCceEEEE-CCCCHHHHHHHHHcCCcEEEE
Confidence 3478899999888764 489999994433 2223455556655556776544 456778888999999998753
No 173
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.11 E-value=3 Score=25.68 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=52.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHh-cCCeEE-EecCHHH-HHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 28 FALVVDDDPMIRRIHSMILKS-VGFKVE-VAENGKE-AVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~-~g~~v~-~~~~~~~-~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
+|.+++-...-...+..+... .++.++ .++...+ +-...+. .... ..-| +-+.+....++.-+|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-~~~~-~~~~----------~~~ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-YGIP-VYTD----------LEELLADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-TTSE-EESS----------HHHHHHHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-hccc-chhH----------HHHHHHhhcCCEEEEe
Confidence 566676655555555555554 345544 3333333 3322222 1222 2222 1122222222332222
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCC--CHHHHHHHHHHH
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPL--TMAKIVPLLEEL 142 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~--~~~~l~~~l~~~ 142 (145)
.....-.+....+++.|..-++-||+ +.+++.+.++..
T Consensus 70 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 70 TPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp SSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHH
Confidence 22333445677789999999999999 677777766544
No 174
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=90.05 E-value=6 Score=29.02 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=40.2
Q ss_pred CHHHHHHHHHhhCCCCcEE--EEecCCChHHHHHHHHhcccEEe-----eCCCCHHHHHHHHHH
Q 045936 85 DGIEATKAMRAMKVESKIV--GVTSRNSETEREVFMQAGLDLCY-----TKPLTMAKIVPLLEE 141 (145)
Q Consensus 85 ~g~~~~~~l~~~~~~~~ii--~lt~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~l~~ 141 (145)
.++++++.+++.. ..||+ ...+-..++....+++.|+++++ .|.-++.+....+.+
T Consensus 184 ~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ 246 (287)
T TIGR00343 184 VPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVE 246 (287)
T ss_pred CCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHH
Confidence 5788888888754 57887 55666689999999999999974 444456655554443
No 175
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=90.02 E-value=4.1 Score=27.78 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=45.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe--E-EEecCHHHHHHHH-hcCCCccEEEEeCCCCCCCH-HHHHHHHHhh
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK--V-EVAENGKEAVDLF-RTGAKFHIVFIDMEMPVMDG-IEATKAMRAM 96 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~--v-~~~~~~~~~l~~l-~~~~~~dlil~d~~~~~~~g-~~~~~~l~~~ 96 (145)
.+|..+|.++.....++.-++..+.. + +...+...++... .....+|+|++|-=...... .+++..|.+.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~ 140 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAEN 140 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHC
Confidence 37999999999999999999887733 2 3456766666555 23367999999943333333 5577777654
No 176
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=90.01 E-value=6.3 Score=29.20 Aligned_cols=82 Identities=11% Similarity=0.001 Sum_probs=58.4
Q ss_pred HHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCC-C----CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHH
Q 045936 42 HSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEM-P----VMDGIEATKAMRAMKVESKIVGVTSRNSETERE 115 (145)
Q Consensus 42 l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~-~----~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~ 115 (145)
+...++..|..+. .+.+.+++...... .+|.|++.-.- . ..+.+.+++.+++.. ++||+.-.+-.+.....
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~--GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA--GADAVIAEGMESGGHIGELTTMALVPQVVDAV-SIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc--CCCEEEEECcccCCCCCCCcHHHHHHHHHHHh-CCCEEEECCCCCHHHHH
Confidence 5556666786654 67888888777665 48988874322 1 223577888887654 58888877888888888
Q ss_pred HHHHhcccEEe
Q 045936 116 VFMQAGLDLCY 126 (145)
Q Consensus 116 ~~~~~g~~~~l 126 (145)
.++..|+++..
T Consensus 178 ~al~~GA~gV~ 188 (307)
T TIGR03151 178 AAFALGAEAVQ 188 (307)
T ss_pred HHHHcCCCEee
Confidence 99999999875
No 177
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=90.00 E-value=0.98 Score=30.81 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=46.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC--CCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM--PVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~--~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
||++|+.......+.++|+..|+.+..+.+.+..+..+.. ..||.||+.--- |...+. ..+.++......|++-++
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iils~GPg~p~~~~~-~~~~~~~~~~~~PiLGIC 79 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA-LKPQKIVISPGPCTPDEAGI-SLDVIRHYAGRLPILGVC 79 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh-cCCCEEEEcCCCCChHHCCc-cHHHHHHhcCCCCEEEEC
Confidence 8999999999999999999999876655543222333333 358877765321 111111 223333333467777654
Q ss_pred c
Q 045936 107 S 107 (145)
Q Consensus 107 ~ 107 (145)
-
T Consensus 80 l 80 (187)
T PRK08007 80 L 80 (187)
T ss_pred H
Confidence 3
No 178
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=89.86 E-value=5.9 Score=28.64 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=61.4
Q ss_pred HHHHhcCCeEEEec--CHHHHHHHHhcCCCccEEEEeCCCC--CCCHH---HHHHHHHhhCCCCcEEEEecCCChHHHHH
Q 045936 44 MILKSVGFKVEVAE--NGKEAVDLFRTGAKFHIVFIDMEMP--VMDGI---EATKAMRAMKVESKIVGVTSRNSETEREV 116 (145)
Q Consensus 44 ~~l~~~g~~v~~~~--~~~~~l~~l~~~~~~dlil~d~~~~--~~~g~---~~~~~l~~~~~~~~ii~lt~~~~~~~~~~ 116 (145)
..|-..||.|..+. |.--|-+.... .+.- ++-+-.| ...|+ ..++.|+++ +.+||++=++-..++....
T Consensus 131 e~Lv~eGF~VlPY~~~D~v~a~rLed~-Gc~a--VMPlgsPIGSg~Gl~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~ 206 (267)
T CHL00162 131 EFLVKKGFTVLPYINADPMLAKHLEDI-GCAT--VMPLGSPIGSGQGLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQ 206 (267)
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHHHc-CCeE--EeeccCcccCCCCCCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHH
Confidence 34556799987433 44444444333 3333 3344443 33343 466667665 4589998899999999999
Q ss_pred HHHhcccEEe-----eCCCCHHHHHHHHHHH
Q 045936 117 FMQAGLDLCY-----TKPLTMAKIVPLLEEL 142 (145)
Q Consensus 117 ~~~~g~~~~l-----~kP~~~~~l~~~l~~~ 142 (145)
+++.|+++.+ .|--++.++...++..
T Consensus 207 AmElGaDgVL~nSaIakA~dP~~mA~a~~~A 237 (267)
T CHL00162 207 AMELGASGVLLNTAVAQAKNPEQMAKAMKLA 237 (267)
T ss_pred HHHcCCCEEeecceeecCCCHHHHHHHHHHH
Confidence 9999999974 5666777777766543
No 179
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.78 E-value=2.3 Score=33.61 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=47.1
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+..+.+..+.. ...|+|.+|.... +..-.+++++||+.+|+.+|+ ..+....+....+.++|+|.+-
T Consensus 227 ~~~~~a~~Lv~-aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 227 DVAAKARALLE-AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hHHHHHHHHHH-hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEEE
Confidence 33444444444 3589999997664 345678999999988876654 3466677778888999998863
No 180
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.76 E-value=3.2 Score=29.59 Aligned_cols=56 Identities=21% Similarity=0.088 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCC------hHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 86 GIEATKAMRAMKVESKIVGVTSRNS------ETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~lt~~~~------~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
++++++.+|+.. .+|+++++-... ......+.++|+++++...+.++++...++.+
T Consensus 64 ~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 64 VLELVKEIRKKN-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHhhcC-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 455666666544 567666554332 55677788888888887655666655555443
No 181
>PRK05637 anthranilate synthase component II; Provisional
Probab=89.69 E-value=3.3 Score=28.81 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=45.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~~~~~~~ii~l 105 (145)
++|+++|....+...+..+|+..|+.+..+..... .+.+.. ..||.||+.---.. .+.....+.++......||+-+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~-~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI 79 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA-ANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI 79 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh-cCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE
Confidence 47999999988999999999999987665544221 222333 35887777321111 1111223444432335677655
Q ss_pred e
Q 045936 106 T 106 (145)
Q Consensus 106 t 106 (145)
.
T Consensus 80 C 80 (208)
T PRK05637 80 C 80 (208)
T ss_pred c
Confidence 3
No 182
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=89.61 E-value=3.7 Score=32.64 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+-.+.+-+ ...|+|.+|..... ...++.+++||+.+|+.+++ ..+....+....+.++|+|...
T Consensus 250 ~~r~~~l~~-ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~ 315 (505)
T PLN02274 250 KERLEHLVK-AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVI-GGNVVTMYQAQNLIQAGVDGLR 315 (505)
T ss_pred HHHHHHHHH-cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEE-EecCCCHHHHHHHHHcCcCEEE
Confidence 343344433 34899999985422 22458999999988776654 4456677788889999999874
No 183
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=89.48 E-value=0.7 Score=31.80 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=36.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEe
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d 78 (145)
||++|+....-..+..+|++.|+.+......+.....+.. ..||.||+.
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN-MKPDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh-CCCCEEEEC
Confidence 8999999999999999999999887755544333333443 358877765
No 184
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=89.37 E-value=5.9 Score=27.95 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=57.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccE--EEEeCCCCCCCH-HHHHHHHHhhCCCCcE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHI--VFIDMEMPVMDG-IEATKAMRAMKVESKI 102 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dl--il~d~~~~~~~g-~~~~~~l~~~~~~~~i 102 (145)
+..|||-+...-+.-.+..-+.+.|-.|..+.-.++.+..... ..|++ ..||. .+.++ -++..++++.+|...+
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~-~~p~~~t~v~Dv--~d~~~~~~lvewLkk~~P~lNv 81 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKA-ENPEIHTEVCDV--ADRDSRRELVEWLKKEYPNLNV 81 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHh-cCcchheeeecc--cchhhHHHHHHHHHhhCCchhe
Confidence 4468888888888888888888899888877777777777766 34664 45554 45554 4699999999998887
Q ss_pred EEE
Q 045936 103 VGV 105 (145)
Q Consensus 103 i~l 105 (145)
++=
T Consensus 82 liN 84 (245)
T COG3967 82 LIN 84 (245)
T ss_pred eee
Confidence 654
No 185
>PRK05670 anthranilate synthase component II; Provisional
Probab=89.21 E-value=2.2 Score=29.08 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=44.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEe-CCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFID-MEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d-~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
|||+|........+..+|.+.|+.+............+.. ..||.+|+. -.....+.-...+.++......|++-++-
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl 80 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA-LNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL 80 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh-CCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence 8999999999999999999999886654432111112233 248877763 11111111123334444334577776644
No 186
>PLN02335 anthranilate synthase
Probab=89.16 E-value=2.1 Score=30.07 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=46.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC--CCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM--PVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~--~~~~g~~~~~~l~~~~~~~~ii 103 (145)
..+|+++|........+.++|++.|+.+..+......+..+.. ..||.|++.--- +...+ ...+.++......|++
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~-~~~d~iVisgGPg~p~d~~-~~~~~~~~~~~~~PiL 95 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR-KNPRGVLISPGPGTPQDSG-ISLQTVLELGPLVPLF 95 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh-cCCCEEEEcCCCCChhhcc-chHHHHHHhCCCCCEE
Confidence 3479999987788899999999999876644432111222232 347876664321 11111 1344454444567877
Q ss_pred EEec
Q 045936 104 GVTS 107 (145)
Q Consensus 104 ~lt~ 107 (145)
-++-
T Consensus 96 GICl 99 (222)
T PLN02335 96 GVCM 99 (222)
T ss_pred EecH
Confidence 6544
No 187
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=89.15 E-value=4.7 Score=30.11 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=44.0
Q ss_pred HHHHhcCCCccEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 63 VDLFRTGAKFHIVFIDMEMPVM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 63 l~~l~~~~~~dlil~d~~~~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+..+.+ ..+++|.+|...... ...+.++.+++..|++++++ ......+....+.++|++....
T Consensus 99 ~~~l~e-agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 99 AEALVE-AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHh-cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 333333 358999998755432 34678889988777666654 5666777888899999998753
No 188
>PRK10060 RNase II stability modulator; Provisional
Probab=89.09 E-value=9.2 Score=31.39 Aligned_cols=105 Identities=10% Similarity=0.128 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCC----C-CCCHHHHHHHHHhhC--CCCcEEEEec
Q 045936 37 MIRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEM----P-VMDGIEATKAMRAMK--VESKIVGVTS 107 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~----~-~~~g~~~~~~l~~~~--~~~~ii~lt~ 107 (145)
.....+...|+..|+.+. -+.++-..+..+.. -++|.|=+|-.. . +.....+++.+-... .++.+ +..+
T Consensus 541 ~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~-l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~v-iAeG 618 (663)
T PRK10060 541 ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLAR-FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQV-IAEG 618 (663)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHh-CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcE-EEec
Confidence 334455667788898866 46777778888887 689999888533 2 223445555554421 23333 4566
Q ss_pred CCChHHHHHHHHhcccE----EeeCCCCHHHHHHHHHHHh
Q 045936 108 RNSETEREVFMQAGLDL----CYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~----~l~kP~~~~~l~~~l~~~~ 143 (145)
-.+.+....+...|++. |+.||.+.+++...+++..
T Consensus 619 VEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~ 658 (663)
T PRK10060 619 VETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYL 658 (663)
T ss_pred CCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhh
Confidence 77777788888999865 4789999999988886643
No 189
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=89.02 E-value=6.4 Score=28.00 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=49.4
Q ss_pred HHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 61 EAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 61 ~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+..+.+.+ ...|.+-+|...++. ..++.++.+++..+.+|||.-.+-.+.+...+.++.||+...
T Consensus 152 ~~a~~l~~-aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 152 IDALNLVD-DGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred HHHHHHHH-cCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 44455555 458988888766654 358888999887656889888888888888888899999874
No 190
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=88.98 E-value=5.5 Score=27.08 Aligned_cols=56 Identities=18% Similarity=0.340 Sum_probs=46.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcC--CeEEEecCHHHHHHHHhc-CCCccEEEEeCCCCC
Q 045936 28 FALVVDDDPMIRRIHSMILKSVG--FKVEVAENGKEAVDLFRT-GAKFHIVFIDMEMPV 83 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g--~~v~~~~~~~~~l~~l~~-~~~~dlil~d~~~~~ 83 (145)
+++++..++...+.++.++..+| |.+....+.+++++.+.. +..+-+...+.+..+
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~ 91 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD 91 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc
Confidence 68999999999999999999987 778899999999998863 345677777776654
No 191
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=88.88 E-value=3.9 Score=28.15 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=49.1
Q ss_pred CCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 50 GFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV--MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 50 g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~--~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
++.+....+.+++-..+.. ..|+|-+|...-. .+-.++++.+|+.+ .++++....-+....+.+.|+|-.
T Consensus 45 ~~~V~ITPT~~ev~~l~~a--GadIIAlDaT~R~Rp~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I 116 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA--GADIIALDATDRPRPETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDII 116 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC--T-SEEEEE-SSSS-SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEE
T ss_pred CCCeEECCCHHHHHHHHHc--CCCEEEEecCCCCCCcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEE
Confidence 3567777788888888876 3899999986632 55667888888876 677888889999999999998764
No 192
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=88.76 E-value=4.7 Score=30.14 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=42.2
Q ss_pred ccEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeC
Q 045936 72 FHIVFIDMEMPVM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 72 ~dlil~d~~~~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~k 128 (145)
.|+|++|...... ..++.++++++..|. |.++..+....+....+.++|++.+...
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~-~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPD-SFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCC-CEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 6999999866544 356788999887754 4455665678888999999999997543
No 193
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=88.35 E-value=3.3 Score=30.57 Aligned_cols=92 Identities=14% Similarity=0.097 Sum_probs=59.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----cC-Ce-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 28 FALVVDDDPMIRRIHSMILKS----VG-FK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~----~g-~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
.|||-|++-.....+...++. .+ .. .+.+.+.+++.+.+.. .+|+|++|-.-+ .+--++++.++ . -.
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~--gaDiI~LDn~s~-e~~~~av~~~~---~-~~ 253 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA--GADIIMLDNFTT-EQMREAVKRTN---G-RA 253 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc--CCCEEEeCCCCh-HHHHHHHHhhc---C-Ce
Confidence 367777775555445444422 22 22 4489999999999986 389999994333 23333444332 2 23
Q ss_pred EEEEecCCChHHHHHHHHhcccEEe
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+..++.-+.+.+......|+|.+-
T Consensus 254 ~ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 254 LLEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4666777888889999999998764
No 194
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=88.34 E-value=4.1 Score=27.49 Aligned_cols=71 Identities=24% Similarity=0.214 Sum_probs=48.1
Q ss_pred CccEEEEeCCCC--CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 71 KFHIVFIDMEMP--VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 71 ~~dlil~d~~~~--~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
..|.+++.-+.- -.+-.+.++.+++..|..+.|.+ ...+.+....+++.|++....-.++++++...++.+
T Consensus 49 l~d~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l 121 (169)
T PF01729_consen 49 LSDMILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEEL 121 (169)
T ss_dssp TTSSEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHH
T ss_pred CCCcEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHH
Confidence 356555543332 12346788889888776653333 445677888999999999999999999999988854
No 195
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=88.27 E-value=5.9 Score=26.60 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=50.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhc--CCeEEEec-------CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSV--GFKVEVAE-------NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA 95 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~--g~~v~~~~-------~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~ 95 (145)
++.+|.++...+...+.+...|++. |..++.+. ..++.++.+.. ..||+|++.+..|.+. .++...+.
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~-~~pdiv~vglG~PkQE--~~~~~~~~ 123 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA-SGPDIVFVGLGAPKQE--RWIARHRQ 123 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH-cCCCEEEEECCCCHHH--HHHHHHHH
Confidence 3568999999999999888888665 56665333 34556677776 5799999998877654 34555555
Q ss_pred hCCC
Q 045936 96 MKVE 99 (145)
Q Consensus 96 ~~~~ 99 (145)
..+.
T Consensus 124 ~l~~ 127 (172)
T PF03808_consen 124 RLPA 127 (172)
T ss_pred HCCC
Confidence 5443
No 196
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=88.15 E-value=1.7 Score=27.55 Aligned_cols=56 Identities=9% Similarity=0.000 Sum_probs=39.4
Q ss_pred EEEeCCCCCCCHHHHHHHHHhhCC-CCcEE--EEecCCChHHHHHHHHhcccEEeeCCC
Q 045936 75 VFIDMEMPVMDGIEATKAMRAMKV-ESKIV--GVTSRNSETEREVFMQAGLDLCYTKPL 130 (145)
Q Consensus 75 il~d~~~~~~~g~~~~~~l~~~~~-~~~ii--~lt~~~~~~~~~~~~~~g~~~~l~kP~ 130 (145)
|.+-.++....+.++....+-++| +++|| ..++.-+++.+..|+..|+|+.+.--.
T Consensus 4 i~F~C~wcsygaaDlag~~rmqyp~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC 62 (132)
T COG1908 4 IAFACNWCSYGAADLAGTSRMQYPPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGC 62 (132)
T ss_pred EEEEcccccccchhhhccccccCCCceEEEEeeccCccCHHHHHHHHHcCCCeEEEecc
Confidence 333445566666676666666544 66665 447888999999999999999875543
No 197
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.09 E-value=4.7 Score=31.88 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 61 EAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 61 ~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+..+.+.. ...|++.+|..... ..-++.++.++...|+.|+++ .+....+....+.++|++.+-
T Consensus 231 e~a~~L~~-agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 231 ERAEALVE-AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHH-hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 44444444 35899999975433 345678899988887887765 777888889999999998873
No 198
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=87.92 E-value=4.7 Score=27.88 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCeEEE--ecCHHHHHHHHhcCCCccEEEEeCCCCC-----CCHHHHHHHHHhhC-CCCcEEEEecCCChH
Q 045936 41 IHSMILKSVGFKVEV--AENGKEAVDLFRTGAKFHIVFIDMEMPV-----MDGIEATKAMRAMK-VESKIVGVTSRNSET 112 (145)
Q Consensus 41 ~l~~~l~~~g~~v~~--~~~~~~~l~~l~~~~~~dlil~d~~~~~-----~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~ 112 (145)
.....++..|+.+.. +......+..+.. -.||.|=+|..+.. .....+++.+.... ....-++.++-.+.+
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~-~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~ 214 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLKR-LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEE 214 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHHh-CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEecCCHH
Confidence 345556778988763 4555666667766 56999998865421 23345555554432 222345677888888
Q ss_pred HHHHHHHhcccE----EeeCCCCHH
Q 045936 113 EREVFMQAGLDL----CYTKPLTMA 133 (145)
Q Consensus 113 ~~~~~~~~g~~~----~l~kP~~~~ 133 (145)
....+...|++. |+.+|...+
T Consensus 215 ~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 215 QLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred HHHHHHHcCCCeeeeceeccCCCCC
Confidence 888999999854 466776543
No 199
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.86 E-value=7.4 Score=27.26 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHhhCCCCcEEEEecCCChHH
Q 045936 36 PMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRAMKVESKIVGVTSRNSETE 113 (145)
Q Consensus 36 ~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~ 113 (145)
|.....+.....+.|..+. -+.+..|+...++. .+|++=+ .| +.-|.+.++.++...|..|++ -++.-+.+.
T Consensus 95 P~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~--Gad~vkl---FPa~~~G~~~ik~l~~~~p~ip~~-atGGI~~~N 168 (213)
T PRK06552 95 PSFNRETAKICNLYQIPYLPGCMTVTEIVTALEA--GSEIVKL---FPGSTLGPSFIKAIKGPLPQVNVM-VTGGVNLDN 168 (213)
T ss_pred CCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHc--CCCEEEE---CCcccCCHHHHHHHhhhCCCCEEE-EECCCCHHH
Confidence 3444555555666777666 67888999888765 3787765 22 334688899999888888877 455567788
Q ss_pred HHHHHHhcccEE
Q 045936 114 REVFMQAGLDLC 125 (145)
Q Consensus 114 ~~~~~~~g~~~~ 125 (145)
....+..|++.+
T Consensus 169 ~~~~l~aGa~~v 180 (213)
T PRK06552 169 VKDWFAAGADAV 180 (213)
T ss_pred HHHHHHCCCcEE
Confidence 999999998875
No 200
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=87.66 E-value=4 Score=27.79 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=44.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEe-CCC-CCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFID-MEM-PVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d-~~~-~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++||++|.....-..+..+|++.|+.+..+...+.....+. .+|.+++- --. +. .--.+.+.|+......|++-
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~---~~d~iIi~gGp~~~~-~~~~~~~~i~~~~~~~PiLG 77 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE---NFSHILISPGPDVPR-AYPQLFAMLERYHQHKSILG 77 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc---cCCEEEECCCCCChH-HhhHHHHHHHHhcCCCCEEE
Confidence 68999999999999999999999977665442111122222 36766542 111 11 11123455554334567765
Q ss_pred Eec
Q 045936 105 VTS 107 (145)
Q Consensus 105 lt~ 107 (145)
++-
T Consensus 78 ICl 80 (190)
T PRK06895 78 VCL 80 (190)
T ss_pred EcH
Confidence 543
No 201
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=87.59 E-value=2.8 Score=30.42 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=58.7
Q ss_pred EEEEEeCCHHHHHHHHHH---HH-hcC--Ce-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 28 FALVVDDDPMIRRIHSMI---LK-SVG--FK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~---l~-~~g--~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
.||+-+++......+... ++ ..+ .. .+.+++.+++.+.+.. .+|.|.+|-.-+ ..--+.++.++.. +++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~--gaD~I~ld~~~~-e~l~~~v~~i~~~-~~i 228 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA--GADIIMLDNMSP-EELKEAVKLLKGL-PRV 228 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc--CCCEEEECCCCH-HHHHHHHHHhccC-CCe
Confidence 577777775555433222 22 233 22 3488999999998875 489999985433 1122233444433 445
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
| +..++.-+.+........|++.+-
T Consensus 229 ~-i~asGGIt~~ni~~~a~~Gad~Is 253 (269)
T cd01568 229 L-LEASGGITLENIRAYAETGVDVIS 253 (269)
T ss_pred E-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 5 445666788889899999999874
No 202
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=87.49 E-value=12 Score=29.40 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEEeCCHHHHHH-HHHHHHhcCCe---EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC---HHHHHHHH
Q 045936 21 VSKNRPYFALVVDDDPMIRRI-HSMILKSVGFK---VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD---GIEATKAM 93 (145)
Q Consensus 21 ~~~~~~~~vlii~~~~~~~~~-l~~~l~~~g~~---v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~---g~~~~~~l 93 (145)
.+..+++++.++.=-+.+... -+..-..-|-. +......+.-++.+.. .+||+||+-=--.+.+ ++...+.|
T Consensus 67 SSAaGGLkmvv~Glv~~~TaeAAk~AAlgAGA~V~~~~a~~l~~~~l~~I~~-~~PDIILLaGGtDGG~~e~~l~NA~~L 145 (463)
T TIGR01319 67 SSAAGGLAMAAIGLVPEITAEAAKRAAHGAGAKIANVYAYDLNNKDIEAIEE-SNLDIILFAGGTDGGEEECGIHNAKML 145 (463)
T ss_pred cccCCChheEEEeccchhhHHHHHHHHhcCCcEEEEEEeecCCHHHHHHHhh-cCCCEEEEeCCcCCCchHHHHHHHHHH
Confidence 566678888888766655433 23333333533 4456677777888876 6899999875554443 35667778
Q ss_pred HhhCCCCcEEEEecCCChHHHHHHHHh-cccEEeeCCC
Q 045936 94 RAMKVESKIVGVTSRNSETEREVFMQA-GLDLCYTKPL 130 (145)
Q Consensus 94 ~~~~~~~~ii~lt~~~~~~~~~~~~~~-g~~~~l~kP~ 130 (145)
.+....+|||+-.+....+.+...+.. +...|++-++
T Consensus 146 a~~~~~~pIIyAGN~~a~~~V~~il~~~~~~~~i~eNV 183 (463)
T TIGR01319 146 AEHGLDCAIIVAGNKDIQDEVQEIFDHADIFYRITDNV 183 (463)
T ss_pred HhcCCCCcEEEeCCHHHHHHHHHHHhcCCceEEecCCc
Confidence 777778998887777777777777663 3444454443
No 203
>PRK14974 cell division protein FtsY; Provisional
Probab=87.41 E-value=11 Score=28.50 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=52.7
Q ss_pred cEEEEEeCCH---HHHHHHHHHHHhcCCeEEEec---CH----HHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh-
Q 045936 27 YFALVVDDDP---MIRRIHSMILKSVGFKVEVAE---NG----KEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA- 95 (145)
Q Consensus 27 ~~vlii~~~~---~~~~~l~~~l~~~g~~v~~~~---~~----~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~- 95 (145)
.+|+++..+. .....++.+....|..+.... +. .++++.... ..+|+||+|..=-...-.+++..|+.
T Consensus 169 ~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~-~~~DvVLIDTaGr~~~~~~lm~eL~~i 247 (336)
T PRK14974 169 FSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA-RGIDVVLIDTAGRMHTDANLMDELKKI 247 (336)
T ss_pred CeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh-CCCCEEEEECCCccCCcHHHHHHHHHH
Confidence 4677777663 333445555666676554322 22 244445444 45899999974222122334444433
Q ss_pred ---hCCCCcEEEEecCCChHHHHHH--H--HhcccEE-eeC
Q 045936 96 ---MKVESKIVGVTSRNSETEREVF--M--QAGLDLC-YTK 128 (145)
Q Consensus 96 ---~~~~~~ii~lt~~~~~~~~~~~--~--~~g~~~~-l~k 128 (145)
..|+..++++.+....+....+ + ..+++.+ ++|
T Consensus 248 ~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTK 288 (336)
T PRK14974 248 VRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTK 288 (336)
T ss_pred HHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEee
Confidence 3566667777665544444333 2 2466665 444
No 204
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=87.20 E-value=7.5 Score=27.05 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=51.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHHHHhcC---CCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVDLFRTG---AKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~~l~~~---~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
-+|.-+|-++.....-+..++..|+ ++. ...+..+.+..+... ..||+|++|.. ...-...++.+...-...
T Consensus 71 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~--K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 71 GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD--KRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST--GGGHHHHHHHHHHHEEEE
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc--ccchhhHHHHHhhhccCC
Confidence 4899999999999999999998885 344 567788877766542 26999999984 333444444444332223
Q ss_pred cEEEE
Q 045936 101 KIVGV 105 (145)
Q Consensus 101 ~ii~l 105 (145)
.+|++
T Consensus 149 gvii~ 153 (205)
T PF01596_consen 149 GVIIA 153 (205)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 34444
No 205
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=87.13 E-value=9.5 Score=27.72 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=51.9
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhcCCeEEEec---CHH----HHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 045936 26 PYFALVVDDDPMI---RRIHSMILKSVGFKVEVAE---NGK----EAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA 95 (145)
Q Consensus 26 ~~~vlii~~~~~~---~~~l~~~l~~~g~~v~~~~---~~~----~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~ 95 (145)
+.+|++++-|... .+.+..+....|..+.... +.. +++..... ..+|+||+|.-=-.......+..|+.
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~-~~~D~ViIDT~G~~~~d~~~~~el~~ 178 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA-RNIDVVLIDTAGRLQNKVNLMDELKK 178 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH-CCCCEEEEeCCCCCcchHHHHHHHHH
Confidence 3579999877532 3455666666675554322 222 23333333 45999999974222122233332222
Q ss_pred ----hC------CCCcEEEEecCCChHHHHHHH----HhcccEE-eeC
Q 045936 96 ----MK------VESKIVGVTSRNSETEREVFM----QAGLDLC-YTK 128 (145)
Q Consensus 96 ----~~------~~~~ii~lt~~~~~~~~~~~~----~~g~~~~-l~k 128 (145)
.. ++..++++......+....+. ..+.+++ ++|
T Consensus 179 ~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTK 226 (272)
T TIGR00064 179 IKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTK 226 (272)
T ss_pred HHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEc
Confidence 12 555667776655544433332 2455554 444
No 206
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=87.06 E-value=7.4 Score=26.41 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=48.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhc--CCeEEEe----c--CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSV--GFKVEVA----E--NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~--g~~v~~~----~--~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
.+.+|.+++..+...+.+...|++. |..+... + ..++.++.+.. ..+|++++.+..|.+.- ++...+..
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~-s~~dil~VglG~PkQE~--~~~~~~~~ 123 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR-SGAGIVFVGLGCPKQEI--WMRNHRHL 123 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH-cCCCEEEEEcCCcHhHH--HHHHhHHh
Confidence 3468999999999998888888654 4555432 1 22345667776 67999999998887763 34444444
Q ss_pred CC
Q 045936 97 KV 98 (145)
Q Consensus 97 ~~ 98 (145)
.+
T Consensus 124 ~~ 125 (177)
T TIGR00696 124 KP 125 (177)
T ss_pred CC
Confidence 33
No 207
>PLN02591 tryptophan synthase
Probab=86.98 E-value=3.7 Score=29.51 Aligned_cols=57 Identities=19% Similarity=0.118 Sum_probs=37.8
Q ss_pred CHHHHHHHHHhhCCCCcEEEEecCC------ChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 85 DGIEATKAMRAMKVESKIVGVTSRN------SETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 85 ~g~~~~~~l~~~~~~~~ii~lt~~~------~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+.+++++.+|+. ...|+++++=.. -......+.++|+++++...+.+++........
T Consensus 65 ~~~~~~~~~r~~-~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 65 SVISMLKEVAPQ-LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred HHHHHHHHHhcC-CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 356667777743 567876554322 234567788899999988888887776665544
No 208
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=86.91 E-value=13 Score=28.97 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=58.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+++++++.+. ...++...+.........-+.++....+.. .|++++-... ..-|..+++.+. ..+|+|...
T Consensus 291 ~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~---aDv~V~pS~~-E~~g~~vlEAmA---~G~PVI~s~ 362 (465)
T PLN02871 291 ARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS---GDVFVMPSES-ETLGFVVLEAMA---SGVPVVAAR 362 (465)
T ss_pred cEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH---CCEEEECCcc-cccCcHHHHHHH---cCCCEEEcC
Confidence 45667776553 344444444322222223334555555543 5777754322 222444444433 356776443
Q ss_pred cCCChHHHHHHHHh---cccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQA---GLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~---g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.... .+.... |-.+++..|-+++++...+.++++
T Consensus 363 ~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 363 AGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 3222 233344 788999999999999999987763
No 209
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=86.91 E-value=1.9 Score=29.38 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=34.4
Q ss_pred hcCCeEEE------ecCHHHHHHHHhcCCCccEEEEeCCCC--CC----CHHHHHHHHHhhCCCCcEEEEec
Q 045936 48 SVGFKVEV------AENGKEAVDLFRTGAKFHIVFIDMEMP--VM----DGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 48 ~~g~~v~~------~~~~~~~l~~l~~~~~~dlil~d~~~~--~~----~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
..|+.++. +.-..+..+.+.. .++|++++|.... .. ....+++.||+.+|.+||++++.
T Consensus 31 ~l~~~~iNLGfsG~~~le~~~a~~ia~-~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~ 101 (178)
T PF14606_consen 31 RLGLDVINLGFSGNGKLEPEVADLIAE-IDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSP 101 (178)
T ss_dssp HHT-EEEEEE-TCCCS--HHHHHHHHH-S--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE-
T ss_pred HcCCCeEeeeecCccccCHHHHHHHhc-CCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 44666552 2233445566666 4679999997443 11 14568899999999999999974
No 210
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=86.90 E-value=2 Score=31.28 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=38.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEe-------cCHHHHHHHHhcCCCccEEEEeC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVA-------ENGKEAVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~-------~~~~~~l~~l~~~~~~dlil~d~ 79 (145)
|+|||++.+..+...+...|...|+.+... .+.++..+.+.. ..||+||--.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~-~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEA-FKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHH-H--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHH-hCCCeEeccc
Confidence 689999999999999999999888887754 255666666665 4699887554
No 211
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=86.69 E-value=8.4 Score=29.97 Aligned_cols=95 Identities=9% Similarity=0.027 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC----HHHHH---HHHHhhCCCCcEEEEec
Q 045936 35 DPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD----GIEAT---KAMRAMKVESKIVGVTS 107 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~----g~~~~---~~l~~~~~~~~ii~lt~ 107 (145)
|....+.+...|...||..+.. ....|+++++.---... ..+.+ +.+++..|..+|++ ++
T Consensus 13 N~~ds~~~~~~l~~~G~~~~~~------------~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv-~G 79 (437)
T PRK14331 13 NFNDSEKIKGILQTLGYEPADD------------WEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGV-CG 79 (437)
T ss_pred cHHHHHHHHHHHHHCcCEECCC------------cccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEE-Ec
Confidence 4455677788888888876421 13479999986443222 33444 44555566665554 44
Q ss_pred CCChHHHHHHH-HhcccEEeeCCCCHHHHHHHHHHH
Q 045936 108 RNSETEREVFM-QAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 108 ~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
..........+ ....-+++..+-....+...++..
T Consensus 80 c~a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~ 115 (437)
T PRK14331 80 CLAQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQA 115 (437)
T ss_pred chhcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 32222222222 232335566677777766665543
No 212
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=86.31 E-value=4.6 Score=31.24 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=44.7
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
+.++-+..+.. ...|+|++|...... --++.++++++.+|+..||. .+.-..+....+..+|||+.
T Consensus 251 ~dK~rl~ll~~-aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 251 DDKERLDLLVQ-AGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGL 317 (503)
T ss_pred chhHHHHHhhh-cCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCcee
Confidence 34445666655 458999999765432 35679999999999988872 22223345667788899874
No 213
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=86.16 E-value=6.3 Score=31.31 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=41.4
Q ss_pred CccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 71 KFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 71 ~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..|+|.+|....... .++.+++|++.+|..+|++ .+..+.+....+.++|++.+.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 489999998544332 4689999999877766554 466677788889999999874
No 214
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=85.79 E-value=5.5 Score=27.38 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHHHHhcCCCccEEEEeCCCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMP 82 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~ 82 (145)
.+++++|.+......++.-++..+. .+. ...+...++..+....++|+|++|-=..
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc
Confidence 3799999999999999998887772 222 3445556666665533599999995433
No 215
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=85.73 E-value=10 Score=29.30 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeC---CCC-CCCHHHHHHHHHhhCCCCcEEEEecCCC
Q 045936 35 DPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDM---EMP-VMDGIEATKAMRAMKVESKIVGVTSRNS 110 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~---~~~-~~~g~~~~~~l~~~~~~~~ii~lt~~~~ 110 (145)
|....+.+...|...||.++.. ...+|+|+++. ... ....++.++.+++..+..+.+++++...
T Consensus 12 N~~ds~~~~~~l~~~g~~~~~~------------~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc~a 79 (429)
T TIGR00089 12 NEADSEIMAGLLKEAGYEVTDD------------PEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGCLA 79 (429)
T ss_pred cHHHHHHHHHHHHHCcCEECCC------------cccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECccc
Confidence 4455677888888889876531 13589999873 222 2245677777776665543466666654
Q ss_pred hHHHHHHH-H-hcccEEeeCCCCHHHHHHHHHH
Q 045936 111 ETEREVFM-Q-AGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 111 ~~~~~~~~-~-~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
......++ . .+++. +..+-....+...+..
T Consensus 80 ~~~~ee~~~~~~~vd~-vvg~~~~~~~~~~l~~ 111 (429)
T TIGR00089 80 QREGEELLKRIPEVDI-VLGPQNKERIPEAIES 111 (429)
T ss_pred ccCHHHHHhhCCCCCE-EECCCCHHHHHHHHHH
Confidence 44444433 2 35665 4566666666665554
No 216
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=85.68 E-value=10 Score=26.62 Aligned_cols=68 Identities=12% Similarity=0.237 Sum_probs=53.4
Q ss_pred EEecCHHHHHHHHhcCCCccEEEEeCCC---------CCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccE
Q 045936 54 EVAENGKEAVDLFRTGAKFHIVFIDMEM---------PVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDL 124 (145)
Q Consensus 54 ~~~~~~~~~l~~l~~~~~~dlil~d~~~---------~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~ 124 (145)
.-+++.+|++...+. .+|+| ...| +..+-+++++.+.+ ..+++|.=.....++....+++.|++.
T Consensus 132 AD~St~ee~l~a~~~--G~D~I--GTTLsGYT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~a 205 (229)
T COG3010 132 ADCSTFEEGLNAHKL--GFDII--GTTLSGYTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADA 205 (229)
T ss_pred eccCCHHHHHHHHHc--CCcEE--ecccccccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeE
Confidence 378899999988775 37766 3333 33456888888877 678898888899999999999999999
Q ss_pred Eee
Q 045936 125 CYT 127 (145)
Q Consensus 125 ~l~ 127 (145)
...
T Consensus 206 VvV 208 (229)
T COG3010 206 VVV 208 (229)
T ss_pred EEE
Confidence 753
No 217
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.44 E-value=16 Score=28.61 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=53.7
Q ss_pred cEEEEEeCCHHHHH---HHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHh----h-
Q 045936 27 YFALVVDDDPMIRR---IHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRA----M- 96 (145)
Q Consensus 27 ~~vlii~~~~~~~~---~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~----~- 96 (145)
.+|.+++-|..-.. .+..+....|..+..+.+..++...+.. ..+|+||+|. ++.. ..+.++.+.+ .
T Consensus 253 ~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~~~~ 329 (432)
T PRK12724 253 KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSELILIDT--AGYSHRNLEQLERMQSFYSCFG 329 (432)
T ss_pred CeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCCCEEEEeC--CCCCccCHHHHHHHHHHHHhhc
Confidence 36888887763322 2333334456666555566677776665 5699999996 2221 1122233322 2
Q ss_pred --CCCCcEEEEecCCChHHHHHHHH----hcccEE-eeC
Q 045936 97 --KVESKIVGVTSRNSETEREVFMQ----AGLDLC-YTK 128 (145)
Q Consensus 97 --~~~~~ii~lt~~~~~~~~~~~~~----~g~~~~-l~k 128 (145)
.+.-.++++++.........+.. .|.+.+ ++|
T Consensus 330 ~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 330 EKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred CCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 13345677777766655444432 455554 454
No 218
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.32 E-value=9.6 Score=26.04 Aligned_cols=92 Identities=16% Similarity=0.103 Sum_probs=53.1
Q ss_pred HHHHHhcC-CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhc
Q 045936 43 SMILKSVG-FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAG 121 (145)
Q Consensus 43 ~~~l~~~g-~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g 121 (145)
...|...+ +.+....+.++++..++.--.-.+=++.+.+.+.+..++++.+++..+.+.+= .......+....+++.|
T Consensus 6 ~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g-~gtvl~~d~~~~A~~~g 84 (187)
T PRK07455 6 LAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIG-TGTILTLEDLEEAIAAG 84 (187)
T ss_pred HHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEe-EEEEEcHHHHHHHHHcC
Confidence 34455555 34667778888776554311111234445556667888888888776644221 11222335677788899
Q ss_pred ccEEeeCCCCHHHH
Q 045936 122 LDLCYTKPLTMAKI 135 (145)
Q Consensus 122 ~~~~l~kP~~~~~l 135 (145)
++.++..-++.+.+
T Consensus 85 Adgv~~p~~~~~~~ 98 (187)
T PRK07455 85 AQFCFTPHVDPELI 98 (187)
T ss_pred CCEEECCCCCHHHH
Confidence 98876655554443
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=84.97 E-value=10 Score=26.09 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCeEEEec---CHH----HHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh----hCCCCcEEEEe
Q 045936 38 IRRIHSMILKSVGFKVEVAE---NGK----EAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA----MKVESKIVGVT 106 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v~~~~---~~~----~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~----~~~~~~ii~lt 106 (145)
..+.++.+-+..|..+..+. +.. ++++.... ..+|+||+|..=-...-.+.+..+++ ..+.-.+++++
T Consensus 44 a~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~-~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVls 122 (196)
T PF00448_consen 44 AVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK-KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLS 122 (196)
T ss_dssp HHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH-TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred HHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh-cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEe
Confidence 44667777788887776554 222 34444444 45999999973212222333333333 34555667777
Q ss_pred cCCChHHHHHHH---H-hcccEE-eeCC
Q 045936 107 SRNSETEREVFM---Q-AGLDLC-YTKP 129 (145)
Q Consensus 107 ~~~~~~~~~~~~---~-~g~~~~-l~kP 129 (145)
+....+....+. + .+.+.+ ++|=
T Consensus 123 a~~~~~~~~~~~~~~~~~~~~~lIlTKl 150 (196)
T PF00448_consen 123 ATMGQEDLEQALAFYEAFGIDGLILTKL 150 (196)
T ss_dssp GGGGGHHHHHHHHHHHHSSTCEEEEEST
T ss_pred cccChHHHHHHHHHhhcccCceEEEEee
Confidence 766666544432 3 246654 5663
No 220
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.97 E-value=13 Score=27.23 Aligned_cols=92 Identities=9% Similarity=0.118 Sum_probs=60.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hcC--CeE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 28 FALVVDDDPMIRRIHSMILK----SVG--FKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~----~~g--~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
.|||-|++-.....+...+. ..| ..+ +++++.+++.+.... .+|.|.+|- -+.+.++++.+.....
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~--gaDyI~lD~-----~~~e~l~~~~~~~~~~ 232 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA--GADIIMFDN-----RTPDEIREFVKLVPSA 232 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc--CCCEEEECC-----CCHHHHHHHHHhcCCC
Confidence 58888888666654444442 234 223 488999999888764 489999872 3456566665543211
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.++..++.-+.+........|++.+-
T Consensus 233 i~i~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 233 IVTEASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred ceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 22345566788888899999999864
No 221
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=84.95 E-value=8.2 Score=28.24 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=52.0
Q ss_pred ccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 72 FHIVFIDMEMPVM--DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 72 ~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
.|.+++--|.-.. +--+.++..|+..|..+.|-+ ...+.+...+++++|+|-.+.-+++++++..+++.
T Consensus 158 sDavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEV-Evesle~~~eAl~agaDiImLDNm~~e~~~~av~~ 228 (280)
T COG0157 158 SDAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEV-EVESLEEAEEALEAGADIIMLDNMSPEELKEAVKL 228 (280)
T ss_pred cceEEehhhHHHHhccHHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHH
Confidence 5777666554332 334578888887776664433 55677889999999999999999999999999876
No 222
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=84.82 E-value=12 Score=26.79 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCeEEEecCHHH--HHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCChHHHH
Q 045936 40 RIHSMILKSVGFKVEVAENGKE--AVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKIVGVTSRNSETERE 115 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~~~~~~~~--~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ii~lt~~~~~~~~~ 115 (145)
..+++-|+.....+-.+....+ ..+.+.. ..||-+++|......+.-.++..|+.- ++..|++ =....++..+.
T Consensus 6 n~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~-aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvV-R~p~g~~~~Ik 83 (255)
T COG3836 6 NSFKAALAAGRPQIGLWLSLPDPYMAEILAT-AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVV-RPPVGDPVMIK 83 (255)
T ss_pred chHHHHHhCCCceEEeeecCCcHHHHHHHHh-cCCCEEEecccccCccHHHHHHHHHHhhccCCCCee-eCCCCCHHHHH
Confidence 3456666543344443333322 3444444 569999999999999988899999884 3344554 33456777899
Q ss_pred HHHHhcccEEeeCCCCH-HHHHHHH
Q 045936 116 VFMQAGLDLCYTKPLTM-AKIVPLL 139 (145)
Q Consensus 116 ~~~~~g~~~~l~kP~~~-~~l~~~l 139 (145)
++++.|+..+|..-++. ++-+..+
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~V 108 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQAV 108 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHHH
Confidence 99999999987654443 4443333
No 223
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=84.82 E-value=9.4 Score=25.53 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=46.6
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCC--------CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPV--------MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~--------~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+++.+++.+.... .+|.++++.-.+. ..+.+.++.+++. ..+|+++..+- +.+....+...|++.+.
T Consensus 101 ~~~t~~~~~~~~~~--g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL--GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 45667777666554 4899987644332 2456777877765 46788777655 56778888999999874
No 224
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=84.71 E-value=8.3 Score=25.74 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=28.5
Q ss_pred CCccEEEEeCCCC-----CCCHHHHHHHHHhhCCCCcEEEEecCCChHHH
Q 045936 70 AKFHIVFIDMEMP-----VMDGIEATKAMRAMKVESKIVGVTSRNSETER 114 (145)
Q Consensus 70 ~~~dlil~d~~~~-----~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~ 114 (145)
..+|++++|--.. -.+.-++++.|+++++.+-+| +|++..+...
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evI-lTGr~~p~~l 142 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELV-LTGRNAPKEL 142 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEE-EECCCCCHHH
Confidence 4799999995332 234557888888777666665 5555554433
No 225
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=84.14 E-value=13 Score=26.64 Aligned_cols=103 Identities=16% Similarity=0.207 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHHHhhCC-CCcEEEEecCC
Q 045936 38 IRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMP-----VMDGIEATKAMRAMKV-ESKIVGVTSRN 109 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~-----~~~g~~~~~~l~~~~~-~~~ii~lt~~~ 109 (145)
....+...|+..|+.+. -+.++-..+..+.. -+||.|=+|-..- +.....+++.|-.... ...-++.-+-.
T Consensus 137 ~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~-l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVE 215 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSSLSYLKR-LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVE 215 (256)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhh-CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeecC
Confidence 34455666778898765 67788888888887 6899998886442 2233445665544322 22233455566
Q ss_pred ChHHHHHHHHhcccE----EeeCCCCHHHHHHHHHH
Q 045936 110 SETEREVFMQAGLDL----CYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 110 ~~~~~~~~~~~g~~~----~l~kP~~~~~l~~~l~~ 141 (145)
..+....+.+.|++. |+.||.+.+.+...+..
T Consensus 216 t~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~~ 251 (256)
T COG2200 216 TEEQLDLLRELGCDYLQGYLFSRPLPADALDALLSS 251 (256)
T ss_pred CHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHhh
Confidence 777788888999874 47889998888776643
No 226
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=84.02 E-value=9.9 Score=26.04 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=2.6
Q ss_pred EEEeCC
Q 045936 75 VFIDME 80 (145)
Q Consensus 75 il~d~~ 80 (145)
+++|++
T Consensus 55 i~~d~k 60 (206)
T TIGR03128 55 VLADLK 60 (206)
T ss_pred EEEEEe
Confidence 444443
No 227
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=83.82 E-value=13 Score=26.30 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=49.6
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVM---DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~---~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+..+.++.+.. ..-.+++.|+...+. ..+++++.+.+. ...|+++-.+-.+.+....++..|++..+
T Consensus 147 ~~~~~~~~~~~-~~~~li~~di~~~G~~~g~~~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vi 216 (233)
T cd04723 147 GPEELLRRLAK-WPEELIVLDIDRVGSGQGPDLELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGAL 216 (233)
T ss_pred CHHHHHHHHHH-hCCeEEEEEcCccccCCCcCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 36667777776 333588999876543 235677777665 46888888888899999999999999876
No 228
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.55 E-value=22 Score=28.79 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHH---HHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCC-CCC--HHHHHHHHHhhCCCC
Q 045936 27 YFALVVDDDPMIR---RIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP-VMD--GIEATKAMRAMKVES 100 (145)
Q Consensus 27 ~~vlii~~~~~~~---~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~-~~~--g~~~~~~l~~~~~~~ 100 (145)
.+|.+++-|.... ..+..+-...|+.+....+..+....+..-..+|+||+|.-=- ..+ ..+.+..|+......
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a 460 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVT 460 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCC
Confidence 4677777654322 2233333445665666666666655554434589999997321 111 112233444433444
Q ss_pred cEEEEecCCChHH
Q 045936 101 KIVGVTSRNSETE 113 (145)
Q Consensus 101 ~ii~lt~~~~~~~ 113 (145)
.++++........
T Consensus 461 ~lLVLpAtss~~D 473 (559)
T PRK12727 461 SLLVLPANAHFSD 473 (559)
T ss_pred cEEEEECCCChhH
Confidence 5666655554433
No 229
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=83.55 E-value=7.5 Score=26.81 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=30.9
Q ss_pred HHHhcCCCccEEEEeCCCC-----CCCHHHHHHHHHhhCCCCcEEEEecCCChHHH
Q 045936 64 DLFRTGAKFHIVFIDMEMP-----VMDGIEATKAMRAMKVESKIVGVTSRNSETER 114 (145)
Q Consensus 64 ~~l~~~~~~dlil~d~~~~-----~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~ 114 (145)
+.+.+ ..+|++++|=-.. =.+.-++++.|++..+.+-+| +|++..+...
T Consensus 109 ~~l~~-~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV-lTGR~~p~~L 162 (191)
T PRK05986 109 RMLAD-ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV-ITGRGAPREL 162 (191)
T ss_pred HHHhC-CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE-EECCCCCHHH
Confidence 33444 4799999995332 235667888887766666665 5565554443
No 230
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=83.50 E-value=4.5 Score=27.66 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=32.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCH-HHHHHHHhcCCCccEEEEe
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENG-KEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~-~~~l~~l~~~~~~dlil~d 78 (145)
||++|+.......+..+|++.|+.+...... .+. ..+.. ..||.+++.
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~-~~~~~iils 50 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDI-DGIEA-LNPTHLVIS 50 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCH-HHHhh-CCCCEEEEe
Confidence 8999999999999999999999876654422 122 22233 347766554
No 231
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.44 E-value=16 Score=28.62 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCC----CCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 34 DDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMP----VMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~----~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
-|....+.+...|...||. .+ ......|++|+++=.- ....+..+..+++..|+..|+ +++.
T Consensus 14 ~N~~DSe~m~~~L~~~G~~~~~------------~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~ii-VtGC 80 (437)
T COG0621 14 MNLYDSERMAGLLEAAGYEELV------------EDPEEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKII-VTGC 80 (437)
T ss_pred ccHHHHHHHHHHHHHcCCcccc------------CCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEE-EeCC
Confidence 3455667788888888874 21 1123579999986322 223455666666666555444 5555
Q ss_pred CChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 109 NSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.............-.+.+.-|-+...+...|++..
T Consensus 81 ~aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~ 115 (437)
T COG0621 81 LAQAEEEILERAPEVDIVLGPQNKERLPEAIEKAL 115 (437)
T ss_pred ccccCHHHHhhCCCceEEECCccHHHHHHHHHHHh
Confidence 44444333444554566778999999988887764
No 232
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=83.38 E-value=11 Score=25.33 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=47.7
Q ss_pred EEecCHHHHHHHHhcCCCccEEEEeCCCCCC-------CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 54 EVAENGKEAVDLFRTGAKFHIVFIDMEMPVM-------DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 54 ~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~-------~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..+++.+++.+..+. .+|.+++.--.+.. -|++.++++.+..+ .|++++.+- +++....+.+.|++++-
T Consensus 100 ~S~h~~~e~~~a~~~--g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~-~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL--GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASP-IPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHHC--TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTS-SCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhhc--CCCEEEECCccCCCCCccccccCHHHHHHHHHhCC-CCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 478999997666554 48999988654432 28888888877654 888888665 55567788899998863
No 233
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=83.21 E-value=9.4 Score=25.19 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEE--------------EecCHHHHHHHHhcC---CCccEEEEeC-CCCCCCH
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVE--------------VAENGKEAVDLFRTG---AKFHIVFIDM-EMPVMDG 86 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~--------------~~~~~~~~l~~l~~~---~~~dlil~d~-~~~~~~g 86 (145)
++.++||+.-.....+.+..+|+..++.+. .+-+.......+..+ ..||+||+|- +..+-..
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~s 111 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTS 111 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHH
Confidence 346899999999999999999986653322 011222233333322 3699999994 4344445
Q ss_pred HHHHHHHHhhCC--CCcEEEEecC
Q 045936 87 IEATKAMRAMKV--ESKIVGVTSR 108 (145)
Q Consensus 87 ~~~~~~l~~~~~--~~~ii~lt~~ 108 (145)
+-+...++.... ...+|.+|+.
T Consensus 112 IA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 112 IAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESS
T ss_pred HhhheeHHHhhhccCeeEEEEeCC
Confidence 555556655432 3567777654
No 234
>CHL00101 trpG anthranilate synthase component 2
Probab=83.10 E-value=6.8 Score=26.72 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=34.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEe
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d 78 (145)
||++|........+...|+..|+.+.........+..+.. ..||.+++.
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dgiiis 50 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN-LNIRHIIIS 50 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh-CCCCEEEEC
Confidence 8999999999999999999999877655533211222232 348877754
No 235
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=83.00 E-value=7.8 Score=26.28 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=28.6
Q ss_pred CCccEEEEeCCC-----CCCCHHHHHHHHHhhCCCCcEEEEecCCChHHH
Q 045936 70 AKFHIVFIDMEM-----PVMDGIEATKAMRAMKVESKIVGVTSRNSETER 114 (145)
Q Consensus 70 ~~~dlil~d~~~-----~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~ 114 (145)
..+|++++|--. .=.+.-++++.|+..++++-+| +|++..+...
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evV-lTGR~~p~~l 144 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVI-ITGRGCPQDL 144 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEE-EECCCCCHHH
Confidence 479999999533 2235567888887776666665 5555544433
No 236
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=82.92 E-value=10 Score=26.19 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=31.9
Q ss_pred HHHHhcCCCccEEEEeCCC-----CCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHH
Q 045936 63 VDLFRTGAKFHIVFIDMEM-----PVMDGIEATKAMRAMKVESKIVGVTSRNSETEREV 116 (145)
Q Consensus 63 l~~l~~~~~~dlil~d~~~-----~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~ 116 (145)
.+.+.+ ..+|+||+|--. .=.+--++++.|+..+++.-||+......++..+.
T Consensus 115 ~~~l~~-~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ 172 (198)
T COG2109 115 KEALAD-GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIEL 172 (198)
T ss_pred HHHHhC-CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHH
Confidence 334444 469999999422 23455678888887666666665544444444443
No 237
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=82.72 E-value=14 Score=26.00 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=49.2
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVM---DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~---~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+..+.++.+.+...-.+++.|+.-.+. ..+++++.+++.. ..|+++-..-.+.+....+...|+++.+.
T Consensus 148 ~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 567777766664445699999877643 3456777887766 78898888888889999999999988764
No 238
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=82.53 E-value=15 Score=26.24 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=52.5
Q ss_pred HHHHhcCCeEEEecCHHHH-HHHHhcCCCccEEEEeCCCCCCC--H---HHHHHHHHhhCCCCcEEEEecCCChHHHHHH
Q 045936 44 MILKSVGFKVEVAENGKEA-VDLFRTGAKFHIVFIDMEMPVMD--G---IEATKAMRAMKVESKIVGVTSRNSETEREVF 117 (145)
Q Consensus 44 ~~l~~~g~~v~~~~~~~~~-l~~l~~~~~~dlil~d~~~~~~~--g---~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~ 117 (145)
.+|-..||.|..+.+.+=. -+.+++-. -..++-+-.|=.+ | ...++.|.++. +.|+|+=++-..++....+
T Consensus 124 e~Lv~eGF~VlPY~~dD~v~arrLee~G--caavMPl~aPIGSg~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~a 200 (262)
T COG2022 124 EQLVKEGFVVLPYTTDDPVLARRLEEAG--CAAVMPLGAPIGSGLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQA 200 (262)
T ss_pred HHHHhCCCEEeeccCCCHHHHHHHHhcC--ceEeccccccccCCcCcCCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHH
Confidence 3455679998744433322 22333312 2345555554333 2 34667777766 8999988999999999999
Q ss_pred HHhcccEEee
Q 045936 118 MQAGLDLCYT 127 (145)
Q Consensus 118 ~~~g~~~~l~ 127 (145)
++.|+|..|.
T Consensus 201 MElG~DaVL~ 210 (262)
T COG2022 201 MELGADAVLL 210 (262)
T ss_pred Hhcccceeeh
Confidence 9999999873
No 239
>PRK04148 hypothetical protein; Provisional
Probab=82.43 E-value=4.6 Score=26.17 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=60.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++.+++.++-- ....+...|.+.|+.|......+++++.++. ...+++..|+.-|..+-++ +.. ++
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~----------~a~-li 81 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYK----------NAK-LI 81 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHh----------cCC-EE
Confidence 34678888876 3344566777889999999888888888876 4578888888777654221 111 23
Q ss_pred EecCCChHH----HHHHHHhcccEEeeCCCCHHH
Q 045936 105 VTSRNSETE----REVFMQAGLDLCYTKPLTMAK 134 (145)
Q Consensus 105 lt~~~~~~~----~~~~~~~g~~~~l~kP~~~~~ 134 (145)
++-+..++. ..-+.+.|++-++ +|++-+.
T Consensus 82 ysirpp~el~~~~~~la~~~~~~~~i-~~l~~e~ 114 (134)
T PRK04148 82 YSIRPPRDLQPFILELAKKINVPLII-KPLSGEE 114 (134)
T ss_pred EEeCCCHHHHHHHHHHHHHcCCCEEE-EcCCCCC
Confidence 444444443 3335566776644 5766543
No 240
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.35 E-value=22 Score=27.82 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=54.1
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhcCCeEEEecCHHHHHHHH---hcCCCccEEEEeCCCCCCCHHH----HHHHHHh
Q 045936 26 PYFALVVDDDPMI---RRIHSMILKSVGFKVEVAENGKEAVDLF---RTGAKFHIVFIDMEMPVMDGIE----ATKAMRA 95 (145)
Q Consensus 26 ~~~vlii~~~~~~---~~~l~~~l~~~g~~v~~~~~~~~~l~~l---~~~~~~dlil~d~~~~~~~g~~----~~~~l~~ 95 (145)
+.+|.+++-|+.. .+.+..+-...|+.+..+.+..+..+.+ .....+|+||+|.-=-.....+ +.+.++.
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 3478888877653 3344555556677777666666655444 3212489999996321111122 3334443
Q ss_pred hCCCCcEEEEecCCChHH-H---HHHHHhcccEE-eeC
Q 045936 96 MKVESKIVGVTSRNSETE-R---EVFMQAGLDLC-YTK 128 (145)
Q Consensus 96 ~~~~~~ii~lt~~~~~~~-~---~~~~~~g~~~~-l~k 128 (145)
..|+-.++++++...... . ......|.+.+ ++|
T Consensus 349 ~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TK 386 (436)
T PRK11889 349 VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 386 (436)
T ss_pred cCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEc
Confidence 445545566655433322 2 22234466665 455
No 241
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=82.31 E-value=11 Score=27.25 Aligned_cols=57 Identities=14% Similarity=0.019 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhhCCCCcEEEEecC------CChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 85 DGIEATKAMRAMKVESKIVGVTSR------NSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 85 ~g~~~~~~l~~~~~~~~ii~lt~~------~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+.+++++.+|+. +.+|+++++=. .-......+.++|+++++..-+.+++....++.+
T Consensus 78 ~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGE-IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcC-CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 356677777643 56777655433 2234577788888888888777777665554443
No 242
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=82.26 E-value=9.4 Score=26.03 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=28.7
Q ss_pred CCccEEEEeCCCC-----CCCHHHHHHHHHhhCCCCcEEEEecCCChHHH
Q 045936 70 AKFHIVFIDMEMP-----VMDGIEATKAMRAMKVESKIVGVTSRNSETER 114 (145)
Q Consensus 70 ~~~dlil~d~~~~-----~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~ 114 (145)
..+|++++|=-+. =.+--++++.|+...+++-+| +|++..+...
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evI-LTGR~~p~~L 162 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVI-LTGPEMPESL 162 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE-EECCCCCHHH
Confidence 4799999995332 235667888888776666665 5565554433
No 243
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=81.89 E-value=13 Score=26.40 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCC-CCH-HHHHHHHHhhCCCCcEEEEecCCChHH
Q 045936 39 RRIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPV-MDG-IEATKAMRAMKVESKIVGVTSRNSETE 113 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~-~~g-~~~~~~l~~~~~~~~ii~lt~~~~~~~ 113 (145)
...+...|+..||++.- =-..++.+....+ ..||+|-....|.. +.+ .++++.|++....-++++......- .
T Consensus 121 k~iV~~ml~~aGfevidLG~dvP~e~fve~a~e-~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGApv-t 198 (227)
T COG5012 121 KNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKE-LKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPV-T 198 (227)
T ss_pred HHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHH-cCCcEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCccc-c
Confidence 35667788889999872 2256778888777 67999988876643 333 4688999998877777766444322 2
Q ss_pred HHHHHHhcccEEee
Q 045936 114 REVFMQAGLDLCYT 127 (145)
Q Consensus 114 ~~~~~~~g~~~~l~ 127 (145)
..-+-..|+|.|-.
T Consensus 199 q~~a~~iGAD~~~~ 212 (227)
T COG5012 199 QDWADKIGADAYAE 212 (227)
T ss_pred HHHHHHhCCCccCc
Confidence 22345678888754
No 244
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=81.89 E-value=19 Score=28.18 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCC----CCCHHHHHHHH---HhhCCCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP----VMDGIEATKAM---RAMKVESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~----~~~g~~~~~~l---~~~~~~~~ii~lt 106 (145)
-|....+.+...|...||.++.. ....|++|++.=-= ....++.+..+ ++..|..+ |+++
T Consensus 18 ~N~~ds~~~~~~l~~~G~~~~~~------------~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~-vvv~ 84 (448)
T PRK14333 18 MNKADSERMAGILEDMGYQWAED------------ELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLT-LVVA 84 (448)
T ss_pred CcHHHHHHHHHHHHHCcCEECCC------------cccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCE-EEEE
Confidence 45566678888999899877531 13479999885221 12233444333 33445554 4455
Q ss_pred cCCChHHHHHHHH-h-cccEEeeCCCCHHHHHHHHHHH
Q 045936 107 SRNSETEREVFMQ-A-GLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 107 ~~~~~~~~~~~~~-~-g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+..........++ . ++| ++..+-....+...+..+
T Consensus 85 Gc~a~~~~~~~~~~~p~vD-~v~g~~~~~~~~~ll~~~ 121 (448)
T PRK14333 85 GCVAQQEGESLLRRVPELD-LVMGPQHANRLEDLLEQV 121 (448)
T ss_pred CccCccCHHHHHhcCCCCC-EEECCCCHHHHHHHHHHH
Confidence 5554444555553 3 454 455777777776666544
No 245
>PRK00536 speE spermidine synthase; Provisional
Probab=81.88 E-value=17 Score=26.38 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=14.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 70 AKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 70 ~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
..||+||+|.. ++ .++.+.+++.
T Consensus 138 ~~fDVIIvDs~-~~---~~fy~~~~~~ 160 (262)
T PRK00536 138 KKYDLIICLQE-PD---IHKIDGLKRM 160 (262)
T ss_pred CcCCEEEEcCC-CC---hHHHHHHHHh
Confidence 46999999964 22 3455555554
No 246
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.81 E-value=22 Score=27.44 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=57.7
Q ss_pred CcEEEEEeCCHHHH---HHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC-CCCCHH---HHHHHHHhhCC
Q 045936 26 PYFALVVDDDPMIR---RIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM-PVMDGI---EATKAMRAMKV 98 (145)
Q Consensus 26 ~~~vlii~~~~~~~---~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~-~~~~g~---~~~~~l~~~~~ 98 (145)
+.+|.++.-|.... ..++.+....|+.+....+..+....+.....+|+||+|.-= ...+.. ++.+.+....+
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~ 285 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR 285 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC
Confidence 45787777765432 234444555677777777776665554443568999999732 122332 23333343333
Q ss_pred C-CcEEEEecCCChHHHHHHHH----hcccEE-eeC
Q 045936 99 E-SKIVGVTSRNSETEREVFMQ----AGLDLC-YTK 128 (145)
Q Consensus 99 ~-~~ii~lt~~~~~~~~~~~~~----~g~~~~-l~k 128 (145)
. -.++++++..........+. .|.+.+ ++|
T Consensus 286 ~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TK 321 (388)
T PRK12723 286 DAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTK 321 (388)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEe
Confidence 3 45677777766665554432 345565 455
No 247
>PRK14098 glycogen synthase; Provisional
Probab=81.67 E-value=24 Score=27.91 Aligned_cols=110 Identities=9% Similarity=-0.061 Sum_probs=58.5
Q ss_pred cEEEEEeCCH-HHHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 27 YFALVVDDDP-MIRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 27 ~~vlii~~~~-~~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
.+++++++.+ .....++.+.++.+-.+. ..-+.+++...+ . ..|++++-... ..-|+..+..++ ..+|+|
T Consensus 337 ~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~-a--~aDi~l~PS~~-E~~Gl~~lEAma---~G~ppV 409 (489)
T PRK14098 337 IQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAI-A--GLDMLLMPGKI-ESCGMLQMFAMS---YGTIPV 409 (489)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHH-H--hCCEEEeCCCC-CCchHHHHHHHh---CCCCeE
Confidence 4667777643 345566666655543333 222333333333 3 36888865432 223554444433 345555
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+.......+........+..+++..|.+++.|..+|.+++
T Consensus 410 v~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 410 AYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred EecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 4433222222222222366789999999999999887653
No 248
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=81.20 E-value=20 Score=26.75 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=53.4
Q ss_pred HHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEe-CCCCC-----C-CHHHHHHHHHhhCCCCcEEEEecCCChHH
Q 045936 42 HSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFID-MEMPV-----M-DGIEATKAMRAMKVESKIVGVTSRNSETE 113 (145)
Q Consensus 42 l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d-~~~~~-----~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~ 113 (145)
+...++..|..+. .+++.+++...++. .+|.|++- ....+ . +.+.++..++... .+|||.-..-.+...
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~--G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~-~iPViaAGGI~dg~~ 204 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA--GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV-DIPVIAAGGIADGRG 204 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT--T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH--SS-EEEESS--SHHH
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc--CCCEEEEeccccCCCCCccccceeeHHHHHhhhc-CCcEEEecCcCCHHH
Confidence 4455777787655 89999999988776 38977765 33322 1 2456677776654 488887777778888
Q ss_pred HHHHHHhcccEEe
Q 045936 114 REVFMQAGLDLCY 126 (145)
Q Consensus 114 ~~~~~~~g~~~~l 126 (145)
+..++..||++..
T Consensus 205 iaaal~lGA~gV~ 217 (330)
T PF03060_consen 205 IAAALALGADGVQ 217 (330)
T ss_dssp HHHHHHCT-SEEE
T ss_pred HHHHHHcCCCEee
Confidence 9999999999975
No 249
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=81.17 E-value=17 Score=25.86 Aligned_cols=90 Identities=13% Similarity=0.027 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCeEE-Eec--CHHHHHHHHhcCCCccEEEEeCCCCCC------CHHHHHHHHHhhCCCCcEEEEec
Q 045936 37 MIRRIHSMILKSVGFKVE-VAE--NGKEAVDLFRTGAKFHIVFIDMEMPVM------DGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~v~-~~~--~~~~~l~~l~~~~~~dlil~d~~~~~~------~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
.....+...+++.|..+. .++ +..+.++.+.. ....++++. ..|+. +..+.++.+|+..+..|+++=.+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~-~~~~~l~ms-v~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK-LSPLFIYYG-LRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-hCCCEEEEE-eCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 344566777788887643 333 22344444443 345666663 33331 22456777777655556543333
Q ss_pred CCChHHHHHHHHhcccEEeeC
Q 045936 108 RNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l~k 128 (145)
-.+.+....+...|+|.++.-
T Consensus 194 I~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEEC
Confidence 337788888889999998754
No 250
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=81.10 E-value=14 Score=26.89 Aligned_cols=50 Identities=28% Similarity=0.206 Sum_probs=29.3
Q ss_pred CHHHHHHHHHhhCCCCcEEEEecCC------ChHHHHHHHHhcccEEeeCCCCHHH
Q 045936 85 DGIEATKAMRAMKVESKIVGVTSRN------SETEREVFMQAGLDLCYTKPLTMAK 134 (145)
Q Consensus 85 ~g~~~~~~l~~~~~~~~ii~lt~~~------~~~~~~~~~~~g~~~~l~kP~~~~~ 134 (145)
+.+++++.+|+.++.+|+++++=.. -......+.+.|+++++..-+.+++
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee 135 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE 135 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHH
Confidence 3456666666666677776664322 2233556677777777765444443
No 251
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.03 E-value=33 Score=29.01 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=57.6
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC-CCCC--HHHHHHHHHh-hCCC
Q 045936 27 YFALVVDDDPMI---RRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM-PVMD--GIEATKAMRA-MKVE 99 (145)
Q Consensus 27 ~~vlii~~~~~~---~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~-~~~~--g~~~~~~l~~-~~~~ 99 (145)
.+|.++.-|... .+.++.+-+..|..+..+.+.++..+.+..-..+|+||+|.-= ...+ -.+.+..+.. ..|.
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~ 295 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPV 295 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCC
Confidence 467777766543 2445555566676666666777776666654567999999732 1122 2334444433 3455
Q ss_pred CcEEEEecCCChHHHH---HHHHh----cccEE-eeC
Q 045936 100 SKIVGVTSRNSETERE---VFMQA----GLDLC-YTK 128 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~---~~~~~----g~~~~-l~k 128 (145)
-.+++++......... ..+.. +.+++ ++|
T Consensus 296 e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTK 332 (767)
T PRK14723 296 RRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITK 332 (767)
T ss_pred eEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEec
Confidence 5567776655544433 33332 45665 455
No 252
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=80.87 E-value=7.3 Score=27.25 Aligned_cols=42 Identities=17% Similarity=0.019 Sum_probs=30.4
Q ss_pred hCCCCcEEEEecC------CChHHHHHHHHhcccEEeeCCCCHHHHHH
Q 045936 96 MKVESKIVGVTSR------NSETEREVFMQAGLDLCYTKPLTMAKIVP 137 (145)
Q Consensus 96 ~~~~~~ii~lt~~------~~~~~~~~~~~~g~~~~l~kP~~~~~l~~ 137 (145)
..-.|||++++=+ .....+..+..+|+++|+.--+.++|-..
T Consensus 92 ~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 92 QGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred cCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 3446899877533 35556778899999999988777776543
No 253
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=80.68 E-value=8.2 Score=26.15 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=24.7
Q ss_pred CCccEEEEeCCC-----CCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHH
Q 045936 70 AKFHIVFIDMEM-----PVMDGIEATKAMRAMKVESKIVGVTSRNSETERE 115 (145)
Q Consensus 70 ~~~dlil~d~~~-----~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~ 115 (145)
..+|++|+|=-+ .=.+--++++.|+..++.+-+| +|+...+....
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV-lTGR~~~~~l~ 144 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV-LTGRNAPEELI 144 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE-EE-SS--HHHH
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE-EECCCCCHHHH
Confidence 479999999422 3345667888888765556555 66665554443
No 254
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=80.62 E-value=6.9 Score=32.94 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=46.4
Q ss_pred CccEEEEe-CCCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFID-MEMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d-~~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+-++|+| .++-...+.+ +++.|.+-..++.+|+.|+.. ..+...+..-+.-|-.++++.+++...|++++
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~--~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP--QKIPVTVLSRCLQFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh--hhccchhhhheEEEecCCcCHHHHHHHHHHHH
Confidence 46788888 3444434444 455554444466666666543 33445566777788889999999999988875
No 255
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=80.58 E-value=16 Score=30.56 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=36.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEE
Q 045936 22 SKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFI 77 (145)
Q Consensus 22 ~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~ 77 (145)
.+..+.+|+|+|........+..+|++.|+.+........ ...... ..+|.||+
T Consensus 512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~-~~~~~~-~~~DgLIL 565 (717)
T TIGR01815 512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHA-EAAFDE-RRPDLVVL 565 (717)
T ss_pred CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCC-hhhhhh-cCCCEEEE
Confidence 3345679999998887888999999999988765543211 112222 35887776
No 256
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=80.37 E-value=19 Score=25.98 Aligned_cols=87 Identities=11% Similarity=0.196 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeC-CCCCCC-HHHHHHHHHhhCC-CCcEEEEecCCChHHH
Q 045936 39 RRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDM-EMPVMD-GIEATKAMRAMKV-ESKIVGVTSRNSETER 114 (145)
Q Consensus 39 ~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~-~~~~~~-g~~~~~~l~~~~~-~~~ii~lt~~~~~~~~ 114 (145)
...+...-...|.. ++.+++.+|+...+.. .+++|=++- ++.... .++....|...-| +..+|.-++-.+++..
T Consensus 147 l~~l~~~a~~lGle~lVEVh~~~El~~al~~--~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~ 224 (254)
T PF00218_consen 147 LEELLELAHSLGLEALVEVHNEEELERALEA--GADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDA 224 (254)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHT--T-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHH
T ss_pred HHHHHHHHHHcCCCeEEEECCHHHHHHHHHc--CCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHHH
Confidence 35566666778987 5599999999888865 367776653 444332 3344455555433 4445555777788889
Q ss_pred HHHHHhcccEEee
Q 045936 115 EVFMQAGLDLCYT 127 (145)
Q Consensus 115 ~~~~~~g~~~~l~ 127 (145)
..+...|++++|.
T Consensus 225 ~~l~~~G~davLV 237 (254)
T PF00218_consen 225 RRLARAGADAVLV 237 (254)
T ss_dssp HHHCTTT-SEEEE
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999975
No 257
>PRK00811 spermidine synthase; Provisional
Probab=80.17 E-value=20 Score=26.12 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=47.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC------CeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCC-----HHHHHHHHH
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG------FKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMD-----GIEATKAMR 94 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g------~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~-----g~~~~~~l~ 94 (145)
.+|.++|-++...+..+..+...+ -++. ...|+.+.+.. .. ..+|+|++|..-|... ..++.+.++
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~-~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~ 178 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TE-NSFDVIIVDSTDPVGPAEGLFTKEFYENCK 178 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CC-CcccEEEECCCCCCCchhhhhHHHHHHHHH
Confidence 379999999999998888885431 1232 45666665544 22 4799999997655332 245566666
Q ss_pred hhCCCCcEEEE
Q 045936 95 AMKVESKIVGV 105 (145)
Q Consensus 95 ~~~~~~~ii~l 105 (145)
+.-....++++
T Consensus 179 ~~L~~gGvlv~ 189 (283)
T PRK00811 179 RALKEDGIFVA 189 (283)
T ss_pred HhcCCCcEEEE
Confidence 54323334443
No 258
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.11 E-value=19 Score=25.60 Aligned_cols=67 Identities=7% Similarity=0.027 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCC-C--HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVM-D--GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~-~--g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+.++.+.....-.+++.|....++ . .+++++.+.+. ...|+++-..-.+.+....++..|++..+.
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA-TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5555555542234688888876543 2 35677888765 468888888888988999999999998764
No 259
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=80.03 E-value=11 Score=22.81 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=53.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
+++.-.|......+..+|+..|+.|..+.. ++. ..-|++|.|...... .+....|.++..
T Consensus 2 cwL~irNa~Le~yL~~lL~~~G~~v~~y~~-q~~-------~~~DvlItD~~~~~~------------~~~~a~I~~s~~ 61 (92)
T PF09456_consen 2 CWLAIRNAYLESYLQRLLSYHGFQVQRYEG-QQP-------DADDVLITDYEPQVA------------WPGRAVIRFSRR 61 (92)
T ss_dssp EEEE---HHHHHHHHHHHCTTTEEEEE-SS------------TT-EEEEESS-S----------------SSEEEEEESS
T ss_pred EEEEehhHHHHHHHHHHHHHCCcEEEEecC-CCC-------CCCcEEEECCCcccC------------CcceEEEEEchH
Confidence 566777888899999999999999987762 211 346999999754321 123335666655
Q ss_pred CChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 109 NSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
... ...+.....++....++.+|...|.++
T Consensus 62 hiG----~p~E~~pg~Wl~sTat~~eL~~LL~rI 91 (92)
T PF09456_consen 62 HIG----PPQERRPGYWLHSTATPHELPALLDRI 91 (92)
T ss_dssp -SS----S--TTSTTEEEEESS-TTHHHHHHHHH
T ss_pred hCC----CccccCCCcEEeccCCHHHHHHHHHHh
Confidence 432 234556677888888888888888775
No 260
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=79.93 E-value=27 Score=27.35 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHH---HHHHHhcCCeEEEec---CH----HHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh-
Q 045936 27 YFALVVDDDPMIRRIH---SMILKSVGFKVEVAE---NG----KEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA- 95 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l---~~~l~~~g~~v~~~~---~~----~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~- 95 (145)
.+|++++.|+...... +.+-...+..+.... +. .++++.++. ..+|+||+|+-=-...--++++.++.
T Consensus 129 ~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~-~~~DvViIDTaGr~~~d~~lm~El~~i 207 (429)
T TIGR01425 129 FKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK-ENFDIIIVDTSGRHKQEDSLFEEMLQV 207 (429)
T ss_pred CCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh-CCCCEEEEECCCCCcchHHHHHHHHHH
Confidence 4788888776443222 223333444443222 22 235555554 46999999974211122234444443
Q ss_pred ---hCCCCcEEEEecC
Q 045936 96 ---MKVESKIVGVTSR 108 (145)
Q Consensus 96 ---~~~~~~ii~lt~~ 108 (145)
..|...++++.+.
T Consensus 208 ~~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 208 AEAIQPDNIIFVMDGS 223 (429)
T ss_pred hhhcCCcEEEEEeccc
Confidence 2345455666443
No 261
>PRK12704 phosphodiesterase; Provisional
Probab=79.66 E-value=4.2 Score=32.48 Aligned_cols=43 Identities=7% Similarity=0.003 Sum_probs=35.3
Q ss_pred cEEEEecCCChH--HHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 101 KIVGVTSRNSET--EREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 101 ~ii~lt~~~~~~--~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+|++|+.++.. ....+++.++.++..||...+++...+++.+
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~ 295 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEV 295 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence 467777766655 6778899999999999999999999887654
No 262
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.61 E-value=13 Score=27.45 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=48.3
Q ss_pred ccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 72 FHIVFIDMEMPVM--DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 72 ~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.|.|++.-+.-.. +-.+.++..|+..|...-| .....+.+....++++|+|-.+.-.++++++.+.++.+
T Consensus 167 sD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kI-eVEv~tleea~~a~~agaDiImLDnmspe~l~~av~~~ 238 (290)
T PRK06559 167 SDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMV-EVEVESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLI 238 (290)
T ss_pred cceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeE-EEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4656555443222 2346777777776633323 23446778888999999999999999999999998743
No 263
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=79.51 E-value=14 Score=23.70 Aligned_cols=104 Identities=11% Similarity=0.085 Sum_probs=54.0
Q ss_pred CCCCCCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe-cCHHHHHHHHhc-------------CCCccEEEEeCCCCCC
Q 045936 19 NPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVA-ENGKEAVDLFRT-------------GAKFHIVFIDMEMPVM 84 (145)
Q Consensus 19 ~~~~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~-~~~~~~l~~l~~-------------~~~~dlil~d~~~~~~ 84 (145)
++..+...++|-|++.-. ....|...|.+.||.+..+ +...+.-+.+.. -...|++|+-. |+.
T Consensus 3 ~~~~~~~~l~I~iIGaGr-VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav--pDd 79 (127)
T PF10727_consen 3 TPATQAARLKIGIIGAGR-VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV--PDD 79 (127)
T ss_dssp ---------EEEEECTSC-CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S---CC
T ss_pred ccccCCCccEEEEECCCH-HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEe--chH
Confidence 344455678899998854 5567777888889987743 333322222111 12478999754 555
Q ss_pred CHHHHHHHHHhh---CCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 85 DGIEATKAMRAM---KVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 85 ~g~~~~~~l~~~---~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
.-.++.+.|... .+..-++-.+.....+....+.+.|+.-+
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~ 123 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVA 123 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEE
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEE
Confidence 555688888765 23333444466667777888888888544
No 264
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=79.48 E-value=20 Score=28.17 Aligned_cols=96 Identities=9% Similarity=0.071 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCCeEEE----ecCHHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCC
Q 045936 35 DPMIRRIHSMILKSVGFKVEV----AENGKEAVDLFRTGAKFHIVFIDMEMPVM-DGIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~----~~~~~~~l~~l~~~~~~dlil~d~~~~~~-~g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
.|.....+..+|.. ..+.- --+.++.++.. ..||+|.+....+.. ..+++++.+|+..|+++|++-....
T Consensus 33 ~Pl~L~ylAa~l~~--~~iiD~~~~~~~~~~~~~~~---~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~ 107 (472)
T TIGR03471 33 YPTWLAQPAAMIPG--SRLVDAPPHGVTIDDTLAIA---KDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHV 107 (472)
T ss_pred CChHHHHHHHhccC--ceEEeCCcccCCHHHHHHHh---cCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 35566666666652 23321 11334444432 358999988765554 4678999999998888776554433
Q ss_pred ChHHHHHHHH-hcccEEeeCCCCHHHHH
Q 045936 110 SETEREVFMQ-AGLDLCYTKPLTMAKIV 136 (145)
Q Consensus 110 ~~~~~~~~~~-~g~~~~l~kP~~~~~l~ 136 (145)
. ...+.++. ...-||+...-....+.
T Consensus 108 t-~~pe~~l~~~~~vD~Vv~GEgE~~l~ 134 (472)
T TIGR03471 108 A-VLPEKTLKQGPAIDFVCRREFDYTIK 134 (472)
T ss_pred c-cCHHHHHhcCCCeeEEEeCchHHHHH
Confidence 2 23334444 34456666654444333
No 265
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=79.36 E-value=20 Score=25.65 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=47.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-cCCeEEEec-------CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKS-VGFKVEVAE-------NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~-~g~~v~~~~-------~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
.+.+|.+++..+...+.+...|+. .|..+..+. ..++.++.+.. ..+|++++.+..|.+.- ++...+..
T Consensus 104 ~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~-s~~dil~VglG~PkQE~--~~~~~~~~ 180 (243)
T PRK03692 104 EGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHA-SGAKIVTVAMGSPKQEI--FMRDCRLV 180 (243)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEECCCcHHHH--HHHHHHHh
Confidence 357899999999988888887754 465554222 12335667776 67999999999888654 34555444
Q ss_pred C
Q 045936 97 K 97 (145)
Q Consensus 97 ~ 97 (145)
.
T Consensus 181 ~ 181 (243)
T PRK03692 181 Y 181 (243)
T ss_pred C
Confidence 3
No 266
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.32 E-value=28 Score=27.24 Aligned_cols=95 Identities=21% Similarity=0.147 Sum_probs=64.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe-EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH--HHHHHHHhhCCCCc
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK-VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI--EATKAMRAMKVESK 101 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~-v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~--~~~~~l~~~~~~~~ 101 (145)
..+|.=+|-.+..-+..+.-.+.+|.. +. ...+.++.......+..||.||+| |...|. ++++.|.+..| +
T Consensus 315 ~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD---PPR~G~~~~~lk~l~~~~p--~ 389 (432)
T COG2265 315 VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD---PPRAGADREVLKQLAKLKP--K 389 (432)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC---CCCCCCCHHHHHHHHhcCC--C
Confidence 347888999988888888888888865 44 556777776665433579999999 444443 57888876654 3
Q ss_pred EEEEecCCChHHHHHHHHhcccEE
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
-|++.+....+...++...--.+|
T Consensus 390 ~IvYVSCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 390 RIVYVSCNPATLARDLAILASTGY 413 (432)
T ss_pred cEEEEeCCHHHHHHHHHHHHhCCe
Confidence 355666666666666655544444
No 267
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=79.31 E-value=24 Score=26.35 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=58.7
Q ss_pred EEEEEeCCHHHHHHHHHHH-------HhcCC--eE-EEecCHHHHHHHHh------cCCCccEEEEeCC-CCCC----CH
Q 045936 28 FALVVDDDPMIRRIHSMIL-------KSVGF--KV-EVAENGKEAVDLFR------TGAKFHIVFIDME-MPVM----DG 86 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l-------~~~g~--~v-~~~~~~~~~l~~l~------~~~~~dlil~d~~-~~~~----~g 86 (145)
.|||-|++-.....+...+ +..++ .+ +.+.+.+++.+.+. . .+|+|++|-. .+.. +-
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~a--gaDiImLDnm~~~~~~~~~~~ 249 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKT--SLTRVMLDNMVVPLENGDVDV 249 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccC--CCCEEEeCCCcccccccCCCH
Confidence 4788887766554333332 22233 23 48999999999988 5 3899999943 1111 22
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
-++-+.+..... ...+-.++.-+.+.+......|+|..-
T Consensus 250 e~l~~av~~~~~-~~~lEaSGGIt~~ni~~yA~tGVD~Is 288 (308)
T PLN02716 250 SMLKEAVELING-RFETEASGNVTLDTVHKIGQTGVTYIS 288 (308)
T ss_pred HHHHHHHHhhCC-CceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 222222222222 234677888888889898999998753
No 268
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=79.28 E-value=30 Score=27.57 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC----HH---HHHHHHHhhCCCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD----GI---EATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~----g~---~~~~~l~~~~~~~~ii~lt 106 (145)
-|....+.+...|...||.++.. ....|+++++.---..+ .. ..++.+++..|..+|+ ++
T Consensus 25 ~N~~dse~~~~~L~~~G~~~~~~------------~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~p~~~Vv-vg 91 (502)
T PRK14326 25 MNVHDSERLAGLLEAAGYVRAAE------------GQDADVVVFNTCAVRENADNRLYGNLGHLAPVKRANPGMQIA-VG 91 (502)
T ss_pred CcHHHHHHHHHHHHHCCCEECCC------------cCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhCCCCEEE-EE
Confidence 45666788899998889887531 13489999986443222 23 4445555566666554 54
Q ss_pred cCCChHHHHHHHHh--cccEEeeCCCCHHHHHHHHHHH
Q 045936 107 SRNSETEREVFMQA--GLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 107 ~~~~~~~~~~~~~~--g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+.........+++. ++| ++..+.....+...+...
T Consensus 92 Gc~a~~~~ee~~~~~p~VD-~Vvg~~~~~~i~~ll~~~ 128 (502)
T PRK14326 92 GCLAQKDRDTILKRAPWVD-VVFGTHNIGSLPTLLERA 128 (502)
T ss_pred CcccccCHHHHHhhCCCCe-EEECCCCHHHHHHHHHHH
Confidence 54444444444432 454 566777777766666554
No 269
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.23 E-value=8.7 Score=28.37 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=48.9
Q ss_pred ccEEEEeCCCCC-C-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 72 FHIVFIDMEMPV-M-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 72 ~dlil~d~~~~~-~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.|.|++.-+.-. . +--+.++.+++..+..+ +-....+.+....++++|+|-.+.-.++++++.++++.+
T Consensus 176 sD~vLIkdNHi~~~G~i~~av~~~r~~~~~~k--IeVEvetleea~eA~~aGaDiImLDnmspe~l~~av~~~ 246 (294)
T PRK06978 176 YDGILIKENHIAAAGGVGAALDAAFALNAGVP--VQIEVETLAQLETALAHGAQSVLLDNFTLDMMREAVRVT 246 (294)
T ss_pred CceEEEeHHHHHHhCCHHHHHHHHHHhCCCCc--EEEEcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 566655544322 2 22357778877655444 334556788888999999999999999999999988754
No 270
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.20 E-value=22 Score=25.92 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=50.8
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhcCCeEEEecCHHHH---HHHHhcCCCccEEEEeCCCCCCCHHHHHHHH----Hhh
Q 045936 27 YFALVVDDDPM---IRRIHSMILKSVGFKVEVAENGKEA---VDLFRTGAKFHIVFIDMEMPVMDGIEATKAM----RAM 96 (145)
Q Consensus 27 ~~vlii~~~~~---~~~~l~~~l~~~g~~v~~~~~~~~~---l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l----~~~ 96 (145)
.++.+++-++. ....++.+....|+.+....+..+. ++.+.....+|+||+|.-=......+.++.+ +..
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~ 183 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQV 183 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhh
Confidence 35666666543 3344455555567777665665443 3334332358999999732221122233333 333
Q ss_pred CCCCcEEEEecCCChHHH-HH---HHHhcccEE-eeC
Q 045936 97 KVESKIVGVTSRNSETER-EV---FMQAGLDLC-YTK 128 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~-~~---~~~~g~~~~-l~k 128 (145)
.|...++++++....... .. ....+.+.+ ++|
T Consensus 184 ~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TK 220 (270)
T PRK06731 184 EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 220 (270)
T ss_pred CCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEe
Confidence 444446666654443332 22 223455554 444
No 271
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=79.11 E-value=21 Score=25.68 Aligned_cols=84 Identities=6% Similarity=0.044 Sum_probs=48.9
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhhCCCCcEE
Q 045936 28 FALVVDD--DPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAMKVESKIV 103 (145)
Q Consensus 28 ~vlii~~--~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~~~~~~ii 103 (145)
+|.+++- .......+...|...|..+....+.......+..-.+-|++|+ ....+.. ..+.++..++. +++||
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~-iS~sg~~~~~~~~~~~ak~~--ga~iI 206 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLA-ISYSGERRELNLAADEALRV--GAKVL 206 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEE-EcCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 5666554 4445566666777788877766666554444333234575553 3334432 34555555544 68999
Q ss_pred EEecCCChHHH
Q 045936 104 GVTSRNSETER 114 (145)
Q Consensus 104 ~lt~~~~~~~~ 114 (145)
++|+.......
T Consensus 207 ~IT~~~~s~la 217 (278)
T PRK11557 207 AITGFTPNALQ 217 (278)
T ss_pred EEcCCCCCchH
Confidence 99997665443
No 272
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=79.08 E-value=24 Score=27.46 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCC----CCCCCHHHHHHHHHhh-CCCCcEEEEecCC
Q 045936 35 DPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDME----MPVMDGIEATKAMRAM-KVESKIVGVTSRN 109 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~----~~~~~g~~~~~~l~~~-~~~~~ii~lt~~~ 109 (145)
|....+.+...|...||..+.. ....|+|+++.- ......++.++.+... ......+++++..
T Consensus 13 N~~ds~~~~~~l~~~g~~~~~~------------~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~vvv~Gc~ 80 (434)
T PRK14330 13 NENDSETMAGLLKKEGFEPASN------------PEEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLIIGVAGCV 80 (434)
T ss_pred cHHHHHHHHHHHHHCcCEECCC------------cccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCEEEEECcc
Confidence 4455677788888888875421 135899999741 1122456666666221 1123345566665
Q ss_pred ChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 110 SETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 110 ~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.......+...+ .+++..+-....+...+..+
T Consensus 81 a~~~~ee~~~~~-~d~vvg~~~~~~~~~~l~~~ 112 (434)
T PRK14330 81 AEKEREKLLKRG-ADFVIGTRAVPKVTEAVKRA 112 (434)
T ss_pred ccCchhhHHhcC-CcEEEcCCCHHHHHHHHHHH
Confidence 544555555664 45565666666666666554
No 273
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=79.03 E-value=14 Score=25.75 Aligned_cols=50 Identities=24% Similarity=0.195 Sum_probs=33.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHH---HHHHHhcCCCccEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKE---AVDLFRTGAKFHIVFID 78 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~---~l~~l~~~~~~dlil~d 78 (145)
++|++++........+..+|...|+.+..+..... ....+. ..+|.+|+.
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~--~~~dgliis 53 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVA--AQFDGVLLS 53 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhh--cCCCEEEEC
Confidence 57999999988888899999999987664443221 111111 248866664
No 274
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.96 E-value=20 Score=25.33 Aligned_cols=65 Identities=11% Similarity=0.189 Sum_probs=46.2
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+..++++.+... .-.+++.|..-.++ .|++ .+.+..++.|++.-..-.+.+....+...|+++.+
T Consensus 144 ~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d---~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 144 KVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE---EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVI 209 (228)
T ss_pred CHHHHHHHHHHH-hCEEEEEeccchhcccCHH---HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 345666666653 34689999877654 6777 34333357889888888888888888888998864
No 275
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=78.73 E-value=13 Score=26.99 Aligned_cols=51 Identities=24% Similarity=0.083 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCC------ChHHHHHHHHhcccEEeeCCCCHHHHH
Q 045936 86 GIEATKAMRAMKVESKIVGVTSRN------SETEREVFMQAGLDLCYTKPLTMAKIV 136 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~lt~~~------~~~~~~~~~~~g~~~~l~kP~~~~~l~ 136 (145)
.+++++.+|+..+..|+++++=.. -......+.++|+++++..-+.+++-.
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~ 130 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESE 130 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHH
Confidence 467778888667888888775432 234566778889999888766555443
No 276
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.37 E-value=13 Score=27.31 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=41.6
Q ss_pred HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 88 EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 88 ~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+.++.+|+..+..+| .....+.+....+.++|+|..+.-.++++++...++.+
T Consensus 171 ~av~~~r~~~~~~kI--eVEv~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l 223 (278)
T PRK08385 171 EAIRRAKEFSVYKVV--EVEVESLEDALKAAKAGADIIMLDNMTPEEIREVIEAL 223 (278)
T ss_pred HHHHHHHHhCCCCcE--EEEeCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHH
Confidence 466777776666553 34556778888999999999989999999999988765
No 277
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=78.35 E-value=17 Score=27.11 Aligned_cols=49 Identities=4% Similarity=0.058 Sum_probs=36.0
Q ss_pred ecCHHHHHHHHhc--CCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 56 AENGKEAVDLFRT--GAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 56 ~~~~~~~l~~l~~--~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
..+..+|++.+.. ....|++++- |...-+++++.+++.+|+.|+.++--
T Consensus 221 p~n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~~PvaaYqV 271 (320)
T cd04824 221 PGARGLALRAVERDVSEGADMIMVK---PGTPYLDIVREAKDKHPDLPLAVYHV 271 (320)
T ss_pred CcCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhccCCCEEEEEc
Confidence 3466677766432 1247999986 67778999999999998899987643
No 278
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=78.29 E-value=9.9 Score=24.18 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHhhCC-CCcEEEE--ecCCChHHHHHHHHhcccEEeeC
Q 045936 80 EMPVMDGIEATKAMRAMKV-ESKIVGV--TSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 80 ~~~~~~g~~~~~~l~~~~~-~~~ii~l--t~~~~~~~~~~~~~~g~~~~l~k 128 (145)
+.....+.++....+...| ++.+|=+ ++.-++..+..++..|||+.+.-
T Consensus 8 ~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~ 59 (124)
T PF02662_consen 8 NWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVA 59 (124)
T ss_pred CCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEe
Confidence 4455556666666665554 4555533 77779999999999999998763
No 279
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=78.14 E-value=26 Score=30.19 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=49.4
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHHhc-CCeEEEecCH----HHHHHHHhcCCCccEEEEeCCCCCCC----HH-HH
Q 045936 20 PVSKNRPYFALVVDDDPMIRRIHSMILKSV-GFKVEVAENG----KEAVDLFRTGAKFHIVFIDMEMPVMD----GI-EA 89 (145)
Q Consensus 20 ~~~~~~~~~vlii~~~~~~~~~l~~~l~~~-g~~v~~~~~~----~~~l~~l~~~~~~dlil~d~~~~~~~----g~-~~ 89 (145)
+.++...+++|+||+.......|.++|... |..+..+.+- ++..........||.||+.-- |+.+ .. ..
T Consensus 75 ~~~~~~~~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPG-PG~P~~~~d~Gi~ 153 (918)
T PLN02889 75 PSQKLEFVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPG-PGSPTCPADIGIC 153 (918)
T ss_pred CCcccccceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCC-CCCccchHHHHHH
Confidence 334445589999999999999999999887 8775544432 222211111135898887643 2211 11 12
Q ss_pred HHHHHhhCCCCcEEEEec
Q 045936 90 TKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 90 ~~~l~~~~~~~~ii~lt~ 107 (145)
.+.+.+. ...||+-++-
T Consensus 154 ~~~i~~~-~~iPILGICL 170 (918)
T PLN02889 154 LRLLLEC-RDIPILGVCL 170 (918)
T ss_pred HHHHHHh-CCCcEEEEcH
Confidence 3444432 3578876644
No 280
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.98 E-value=19 Score=24.56 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=48.6
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPV--MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~--~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
-+.+..++.+.... .+|.+-+ .|. .-|.+.++.++...+..|++.+. .-+.+.....++.|++.+
T Consensus 111 G~~t~~e~~~A~~~--Gadyv~~---Fpt~~~~G~~~l~~~~~~~~~ipvvaiG-GI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 111 GALTPTEIVTAWQA--GASCVKV---FPVQAVGGADYIKSLQGPLGHIPLIPTG-GVTLENAQAFIQAGAIAV 177 (187)
T ss_pred CcCCHHHHHHHHHC--CCCEEEE---CcCCcccCHHHHHHHHhhCCCCcEEEeC-CCCHHHHHHHHHCCCeEE
Confidence 47888888887765 3676655 333 33789999999887788977664 457788889999999875
No 281
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=77.91 E-value=19 Score=26.43 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=43.1
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+.++.+|+..|..+| .....+.+....+.+.|++-.+...++++++...++.+
T Consensus 176 ~~av~~~r~~~~~~kI--eVEv~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l 229 (277)
T TIGR01334 176 GGAIGRLKQTAPERKI--TVEADTIEQALTVLQASPDILQLDKFTPQQLHHLHERL 229 (277)
T ss_pred HHHHHHHHHhCCCCCE--EEECCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHH
Confidence 3677888877666553 33445778888899999999999999999999998865
No 282
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=77.88 E-value=19 Score=24.41 Aligned_cols=79 Identities=23% Similarity=0.306 Sum_probs=53.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEec-------CHHHHHHHHhcCCCcc--EEEEeCCC--CCCCHHHHHHHHHhhC
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAE-------NGKEAVDLFRTGAKFH--IVFIDMEM--PVMDGIEATKAMRAMK 97 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~-------~~~~~l~~l~~~~~~d--lil~d~~~--~~~~g~~~~~~l~~~~ 97 (145)
|++=|.+...+..++..-++.|-+|...+ ++++.++++.+ .+.| +|++|-.= ....|-+.++.+-. +
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~-a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~-h 80 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQ-APHDPVLVMFDDKGFIGEGPGEQALEYVAN-H 80 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHh-CCCCCEEEEEeCCCCCCCCccHHHHHHHHc-C
Confidence 56667777778888888889998888655 78999999887 4455 66666432 23456677777655 4
Q ss_pred CCCc---EEEEecCC
Q 045936 98 VESK---IVGVTSRN 109 (145)
Q Consensus 98 ~~~~---ii~lt~~~ 109 (145)
|.+. ++.+++..
T Consensus 81 ~~IeVLG~iAVASnT 95 (180)
T PF14097_consen 81 PDIEVLGAIAVASNT 95 (180)
T ss_pred CCceEEEEEEEEecC
Confidence 4444 44555543
No 283
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=77.81 E-value=31 Score=26.95 Aligned_cols=95 Identities=9% Similarity=-0.058 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCC----CHHHHHHHH---HhhCCCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM----DGIEATKAM---RAMKVESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~----~g~~~~~~l---~~~~~~~~ii~lt 106 (145)
-|....+.+...|...||.++. . ...|+++++.=--.. ...+.+..+ ++..|..+| +++
T Consensus 15 ~N~~dse~~~~~l~~~G~~~~~------------~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~i-vv~ 80 (446)
T PRK14337 15 MNVNDSDWLARALVARGFTEAP------------E-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFV-AVG 80 (446)
T ss_pred CcHHHHHHHHHHHHHCCCEECC------------c-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEE-EEE
Confidence 3455667788888888987632 1 237999988633222 234444444 445565544 455
Q ss_pred cCCChHHHHHHH-HhcccEEeeCCCCHHHHHHHHHHH
Q 045936 107 SRNSETEREVFM-QAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 107 ~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+..........+ ...--+++..+-....+...++.+
T Consensus 81 GC~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~ 117 (446)
T PRK14337 81 GCVAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERL 117 (446)
T ss_pred CCccccccHHHHhhCCCCcEEECCCCHHHHHHHHHHH
Confidence 544433333333 333334566677777776666543
No 284
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=77.51 E-value=14 Score=22.86 Aligned_cols=99 Identities=11% Similarity=0.097 Sum_probs=53.8
Q ss_pred EEEEEeCCH--HHHHHHHHHHHhcCCeEEEecCHHHHHHH-HhcCCCcc-EEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 28 FALVVDDDP--MIRRIHSMILKSVGFKVEVAENGKEAVDL-FRTGAKFH-IVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 28 ~vlii~~~~--~~~~~l~~~l~~~g~~v~~~~~~~~~l~~-l~~~~~~d-lil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
+|.++..-. .....+...|.+.|..+....+..+.... +..-.+=| +|++...=...+..+.++.+++. ++++|
T Consensus 7 ~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~--g~~vi 84 (131)
T PF01380_consen 7 RIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKER--GAPVI 84 (131)
T ss_dssp EEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHT--TSEEE
T ss_pred EEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhc--CCeEE
Confidence 666666543 34455566666777676666666664443 33212235 44444322222345566666554 57889
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHH
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMA 133 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~ 133 (145)
++|+..+...... +|..+.-|...+
T Consensus 85 ~iT~~~~~~l~~~-----ad~~l~~~~~~~ 109 (131)
T PF01380_consen 85 LITSNSESPLARL-----ADIVLYIPTGEE 109 (131)
T ss_dssp EEESSTTSHHHHH-----SSEEEEEESSCG
T ss_pred EEeCCCCCchhhh-----CCEEEEecCCCc
Confidence 9998777654433 355554444443
No 285
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=77.47 E-value=22 Score=24.96 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=52.8
Q ss_pred HHHhcCCe--EEEecCHHHHHHHHhcCCCccEE--EEeC-CCCCCCHHHHHHHHHhh----CCCCcEEEEecCCChHHHH
Q 045936 45 ILKSVGFK--VEVAENGKEAVDLFRTGAKFHIV--FIDM-EMPVMDGIEATKAMRAM----KVESKIVGVTSRNSETERE 115 (145)
Q Consensus 45 ~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dli--l~d~-~~~~~~g~~~~~~l~~~----~~~~~ii~lt~~~~~~~~~ 115 (145)
.|+..|.. ++.+-+..+++.....+ .+.| +++- .-.+.+|+++++.+++. .+.++ |+.++-.+.....
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG--a~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~~v~ 172 (213)
T TIGR00875 96 ILKKEGIKTNVTLVFSAAQALLAAKAG--ATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE-VIAASVRHPRHVL 172 (213)
T ss_pred HHHHCCCceeEEEecCHHHHHHHHHcC--CCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE-EEEeccCCHHHHH
Confidence 45566755 34667788888877763 3433 3321 12356888888877663 34566 4567777888888
Q ss_pred HHHHhcccEEeeC
Q 045936 116 VFMQAGLDLCYTK 128 (145)
Q Consensus 116 ~~~~~g~~~~l~k 128 (145)
.+...|++.+-..
T Consensus 173 ~~~~~G~d~vTip 185 (213)
T TIGR00875 173 EAALIGADIATMP 185 (213)
T ss_pred HHHHcCCCEEEcC
Confidence 8889999987443
No 286
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=77.35 E-value=31 Score=26.68 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=57.5
Q ss_pred cEEEEEeC-CHHHHHHHHHHHHhcCCeEEEec--CHHHHHHHHhcCCCccEEEEeCCC-CCCCHHH--HHHHHHhhCCCC
Q 045936 27 YFALVVDD-DPMIRRIHSMILKSVGFKVEVAE--NGKEAVDLFRTGAKFHIVFIDMEM-PVMDGIE--ATKAMRAMKVES 100 (145)
Q Consensus 27 ~~vlii~~-~~~~~~~l~~~l~~~g~~v~~~~--~~~~~l~~l~~~~~~dlil~d~~~-~~~~g~~--~~~~l~~~~~~~ 100 (145)
-+|++.++ -.-.+..+..++.++|+.+..+. +..+..+.+.. ...++|+++.-- |-+.-.+ .+..+-+. ..
T Consensus 103 D~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~--~g 179 (396)
T COG0626 103 DHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-PNTKLVFLETPSNPLLEVPDIPAIARLAKA--YG 179 (396)
T ss_pred CEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-cCceEEEEeCCCCcccccccHHHHHHHHHh--cC
Confidence 46777777 34455667788888998887555 44455555553 358999998632 3332222 22222222 12
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.++++-+.-..-...+.+..|||-++
T Consensus 180 ~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 180 ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred CEEEEECCcccccccChhhcCCCEEE
Confidence 45555555455566677888888765
No 287
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=77.33 E-value=20 Score=24.37 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCeE----EEecCHHHHHHHHhcCCCccEEEEeCCC-C----CCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 38 IRRIHSMILKSVGFKV----EVAENGKEAVDLFRTGAKFHIVFIDMEM-P----VMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v----~~~~~~~~~l~~l~~~~~~dlil~d~~~-~----~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
....+....++.|..+ ....+..+..+.+.. ..|.+.+...- + ...+.+.++.+++. ++.|+.+..+-
T Consensus 91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~--~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI 167 (202)
T cd04726 91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL--GVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGI 167 (202)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC--CCCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCc
Confidence 3455666666777553 356688888874443 47887774211 1 13446666666654 56777655554
Q ss_pred CChHHHHHHHHhcccEEe
Q 045936 109 NSETEREVFMQAGLDLCY 126 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~~l 126 (145)
+.+....+++.|++.++
T Consensus 168 -~~~~i~~~~~~Gad~vv 184 (202)
T cd04726 168 -TPDTLPEFKKAGADIVI 184 (202)
T ss_pred -CHHHHHHHHhcCCCEEE
Confidence 57888899999999874
No 288
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=77.19 E-value=12 Score=25.72 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=35.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d 78 (145)
++|+|+|-.......+...|+..|+.+...++..+. ..+|.+++-
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~-------~~~d~iii~ 45 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEEI-------LDADGIVLP 45 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHHH-------ccCCEEEEC
Confidence 579999999888899999999999988877654322 248987773
No 289
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=77.05 E-value=24 Score=25.61 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=56.6
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhcC--CeE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCC
Q 045936 28 FALVVDDDPMIRRIHSMIL----KSVG--FKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVE 99 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l----~~~g--~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~ 99 (145)
.+|+.+++......+...+ +..| ..+ +++++.+++.+.... .+|.|.+|-.-+ +-++.+.+. ...
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~--gaDyI~ld~~~~-----e~lk~~v~~~~~~ 222 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA--GADIIMLDNMKP-----EEIKEAVQLLKGR 222 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc--CCCEEEECCCCH-----HHHHHHHHHhcCC
Confidence 5788888755543332222 2233 233 488999999998865 489999985333 333333322 223
Q ss_pred CcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 100 SKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.|+ +.++.-+.+........|++.+-
T Consensus 223 ipi-~AsGGI~~~ni~~~a~~Gvd~Is 248 (265)
T TIGR00078 223 VLL-EASGGITLDNLEEYAETGVDVIS 248 (265)
T ss_pred CcE-EEECCCCHHHHHHHHHcCCCEEE
Confidence 554 45666788888899999998864
No 290
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=76.87 E-value=18 Score=26.79 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=42.2
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+.++.+++..|..+|.+ ...+.+....++++|+|-.+.-.++++++.++++.+
T Consensus 196 ~~av~~~r~~~~~~kIeV--Ev~sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEV--EVENLDELDQALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred HHHHHHHHHhCCCCCEEE--EeCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 456777777777666543 344677888999999999999999999999998743
No 291
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=76.81 E-value=17 Score=26.37 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=39.9
Q ss_pred HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 88 EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 88 ~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
..++.+|+..+...+|.++.. +.+....+.+.|+|.+..-|++++++...++..
T Consensus 170 ~~v~~~r~~~~~~~~Igvev~-s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 170 EAVRRARAAAPFTLKIEVEVE-TLEQLKEALEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred HHHHHHHHhCCCCCeEEEEEC-CHHHHHHHHHcCCCEEEECCcCHHHHHHHHHHc
Confidence 356777776654445555554 456777888999999989999999999887643
No 292
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=76.81 E-value=21 Score=24.78 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=41.6
Q ss_pred EEEEEeCC---------HHHHHHHHHHHH-hcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHh-
Q 045936 28 FALVVDDD---------PMIRRIHSMILK-SVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRA- 95 (145)
Q Consensus 28 ~vlii~~~---------~~~~~~l~~~l~-~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~- 95 (145)
|||++... +.....+..+|+ ..||.+....+.+..-.... ..+|+|++...... .+. +..+.|++
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L--~~~Dvvv~~~~~~~~l~~-~~~~al~~~ 77 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL--KGYDVVVFYNTGGDELTD-EQRAALRDY 77 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH--CT-SEEEEE-SSCCGS-H-HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh--cCCCEEEEECCCCCcCCH-HHHHHHHHH
Confidence 46666655 256778888888 67899887666433222112 35999988876642 332 22233333
Q ss_pred hCCCCcEEEEe
Q 045936 96 MKVESKIVGVT 106 (145)
Q Consensus 96 ~~~~~~ii~lt 106 (145)
-....+++.+-
T Consensus 78 v~~Ggglv~lH 88 (217)
T PF06283_consen 78 VENGGGLVGLH 88 (217)
T ss_dssp HHTT-EEEEEG
T ss_pred HHcCCCEEEEc
Confidence 23467787774
No 293
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=76.66 E-value=15 Score=22.78 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEEEEecCCChHH
Q 045936 36 PMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKVESKIVGVTSRNSETE 113 (145)
Q Consensus 36 ~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii~lt~~~~~~~ 113 (145)
......+...+...|..+....+.+.....+..-.+-|++|+= ..++. +..+.++..+++ +++++.+|+..+...
T Consensus 12 ~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~i-S~sG~t~~~~~~~~~a~~~--g~~vi~iT~~~~s~l 88 (128)
T cd05014 12 GHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAI-SNSGETDELLNLLPHLKRR--GAPIIAITGNPNSTL 88 (128)
T ss_pred HHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHC--CCeEEEEeCCCCCch
Confidence 3444566777777787776555543332222211234655542 33332 345566666555 689999999776654
Q ss_pred HHHHHHhcccEEeeCCC
Q 045936 114 REVFMQAGLDLCYTKPL 130 (145)
Q Consensus 114 ~~~~~~~g~~~~l~kP~ 130 (145)
.. .++..+.-|.
T Consensus 89 a~-----~ad~~l~~~~ 100 (128)
T cd05014 89 AK-----LSDVVLDLPV 100 (128)
T ss_pred hh-----hCCEEEECCC
Confidence 43 3566565443
No 294
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=76.64 E-value=34 Score=26.68 Aligned_cols=94 Identities=10% Similarity=0.118 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhc-CCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCC----CHHHHH---HHHHhhCCCCcEEEEe
Q 045936 35 DPMIRRIHSMILKSV-GFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM----DGIEAT---KAMRAMKVESKIVGVT 106 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~-g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~----~g~~~~---~~l~~~~~~~~ii~lt 106 (145)
|....+.+...|... ||.++.- ....|+++++.=--.. ...+.+ +.+++..|.. .|+++
T Consensus 12 N~~dse~~~~~l~~~~G~~~~~~------------~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~-~ivv~ 78 (438)
T TIGR01574 12 NVRDSEHMAALLTAKEGYALTED------------AKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDL-IIGVC 78 (438)
T ss_pred cHHHHHHHHHHHHhcCCcEECCC------------cccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCc-EEEEe
Confidence 445567788888888 8876531 1347999988633222 233444 3334444544 34455
Q ss_pred cCCChHHHHHHHH--hcccEEeeCCCCHHHHHHHHHHH
Q 045936 107 SRNSETEREVFMQ--AGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 107 ~~~~~~~~~~~~~--~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+............ .+++.+ .-+-....+...+...
T Consensus 79 GC~a~~~~~~~~~~~~~vd~v-~g~~~~~~i~~~~~~~ 115 (438)
T TIGR01574 79 GCMASHLGNEIFQRAPYVDFV-FGTRNIHRLPQAIKTP 115 (438)
T ss_pred CccccccHHHHHhcCCCCcEE-ECCCCHHHHHHHHHHH
Confidence 5544444444433 356554 4677777777766554
No 295
>PRK10742 putative methyltransferase; Provisional
Probab=76.63 E-value=26 Score=25.33 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=62.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc------CC----eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHH
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV------GF----KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAM 93 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~------g~----~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l 93 (145)
+++|..+|.++.....++.-|+.. +- ++. ...+..+.+.... ..||+|.+|=..|... .....+.+
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~--~~fDVVYlDPMfp~~~ksa~vkk~m 187 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT--PRPQVVYLDPMFPHKQKSALVKKEM 187 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC--CCCcEEEECCCCCCCccccchhhhH
Confidence 567999999999999999988763 21 222 3456666666533 3699999998777543 22233333
Q ss_pred HhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeC-CCC
Q 045936 94 RAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTK-PLT 131 (145)
Q Consensus 94 ~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~k-P~~ 131 (145)
+-.+. ++-......+....|+...-.-.+.| |..
T Consensus 188 r~~~~----l~g~d~d~~~lL~~Al~~A~kRVVVKrp~~ 222 (250)
T PRK10742 188 RVFQS----LVGPDLDADGLLEPARLLATKRVVVKRPDY 222 (250)
T ss_pred HHHHH----hcCCCCChHHHHHHHHHhcCceEEEecCCC
Confidence 32211 13344556667777877766666655 543
No 296
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.40 E-value=23 Score=25.93 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=42.4
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+.++.+|...|.... +.....+.+....+.++|+|-...-..+++++.+.++..
T Consensus 169 ~~~v~~~k~~~p~~~~-I~VEv~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 169 KEFIQHARKNIPFTAK-IEIECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHHhCCCCce-EEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4677788877664222 234666888888999999999988999999999998753
No 297
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=76.26 E-value=18 Score=26.44 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=3.4
Q ss_pred ccEEEEe
Q 045936 72 FHIVFID 78 (145)
Q Consensus 72 ~dlil~d 78 (145)
+|+||+|
T Consensus 273 ~d~vliD 279 (282)
T TIGR03499 273 KDLILID 279 (282)
T ss_pred CCEEEEe
Confidence 4455544
No 298
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=76.19 E-value=25 Score=24.88 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=40.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCe--EEEec--CHHHHHHHHhcCCCccEEEEeCCCCCC
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFK--VEVAE--NGKEAVDLFRTGAKFHIVFIDMEMPVM 84 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~--v~~~~--~~~~~l~~l~~~~~~dlil~d~~~~~~ 84 (145)
++.-+|-++.....-++.+++.|+. +.... +.-+.+..... ..||+||+|..=...
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~-~~fDliFIDadK~~y 145 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLD-GSFDLVFIDADKADY 145 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccC-CCccEEEEeCChhhC
Confidence 7999999999999999999998853 44333 55555554223 579999999754443
No 299
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=76.14 E-value=22 Score=26.17 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=41.8
Q ss_pred HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 88 EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 88 ~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+.++.+|+..|..+| .....+.+....++++|+|-.+.-.++++++.+.++.+
T Consensus 178 ~av~~~r~~~~~~kI--eVEv~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~ 230 (284)
T PRK06096 178 GAINQLRRHAPEKKI--VVEADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIA 230 (284)
T ss_pred HHHHHHHHhCCCCCE--EEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 567777776665553 34556788888999999999999999999999988754
No 300
>PLN02778 3,5-epimerase/4-reductase
Probab=76.08 E-value=23 Score=25.88 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=39.8
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe----cCHHHHHHHHhcCCCccEEEEe
Q 045936 22 SKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVA----ENGKEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 22 ~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~----~~~~~~l~~l~~~~~~dlil~d 78 (145)
.+..+++|||.+....+...+...|...|+.|... .+.+.....+.. ..||.||--
T Consensus 5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~-~~~D~ViH~ 64 (298)
T PLN02778 5 AGSATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDA-VKPTHVFNA 64 (298)
T ss_pred CCCCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHh-cCCCEEEEC
Confidence 34456799999999999999999998889887532 233433344444 468988833
No 301
>PRK04302 triosephosphate isomerase; Provisional
Probab=76.08 E-value=24 Score=24.70 Aligned_cols=83 Identities=11% Similarity=0.101 Sum_probs=50.6
Q ss_pred HHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCC--CCCC--------C-HHHHHHHHHhhCCCCcEEEEecCC
Q 045936 42 HSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDME--MPVM--------D-GIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 42 l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~--~~~~--------~-g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
+.......|..+. ++.+.+++.. +.. ..+|+|-+.-. +... . ..++++.+++...+.|++.-.+-.
T Consensus 106 ~v~~a~~~Gl~~I~~v~~~~~~~~-~~~-~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~ 183 (223)
T PRK04302 106 VVERAKKLGLESVVCVNNPETSAA-AAA-LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHHHCCCeEEEEcCCHHHHHH-Hhc-CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 3333445787644 5666555554 443 34676654321 1110 1 234556677655567888777777
Q ss_pred ChHHHHHHHHhcccEEe
Q 045936 110 SETEREVFMQAGLDLCY 126 (145)
Q Consensus 110 ~~~~~~~~~~~g~~~~l 126 (145)
.++....+...|+++++
T Consensus 184 ~~e~~~~~~~~gadGvl 200 (223)
T PRK04302 184 TGEDVKAALELGADGVL 200 (223)
T ss_pred CHHHHHHHHcCCCCEEE
Confidence 88888889999999986
No 302
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.03 E-value=28 Score=27.79 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=39.2
Q ss_pred CccEEEEeCCCCCCC--HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 71 KFHIVFIDMEMPVMD--GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 71 ~~dlil~d~~~~~~~--g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..|++.+| ..++.+ ..+.++++++..+..-.|...+-...+....+.++||+...
T Consensus 254 Gvd~i~vd-~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~ 310 (502)
T PRK07107 254 GADVLCID-SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVK 310 (502)
T ss_pred CCCeEeec-CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEE
Confidence 48999999 444443 46788999987763223444556677788889999998863
No 303
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=76.01 E-value=35 Score=26.59 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC----HHHHHHHH---HhhCCCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD----GIEATKAM---RAMKVESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~----g~~~~~~l---~~~~~~~~ii~lt 106 (145)
-|....+.+...|...||.++.. ....|+++++.=--..+ ..+.+..+ ++..|..+| +++
T Consensus 13 ~N~~ds~~~~~~l~~~G~~~~~~------------~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~v-vv~ 79 (439)
T PRK14328 13 MNEEDSEKLAGMLKSMGYERTEN------------REEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLII-GVC 79 (439)
T ss_pred CCHHHHHHHHHHHHHCcCEECCC------------cCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEE-EEE
Confidence 34556677888888889876531 13589999886433222 23222444 444455544 455
Q ss_pred cCCChH--HHHHHH-HhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 107 SRNSET--EREVFM-QAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 107 ~~~~~~--~~~~~~-~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+..... ...... ...--+++..+-....+...+...+
T Consensus 80 GC~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~ 119 (439)
T PRK14328 80 GCMMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVK 119 (439)
T ss_pred CchhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHh
Confidence 544333 223333 3333345667777777777666543
No 304
>PRK09776 putative diguanylate cyclase; Provisional
Probab=75.86 E-value=40 Score=29.13 Aligned_cols=101 Identities=10% Similarity=0.037 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCC----C-CCHHHHHHHHHhhCCCCc-EEEEecCCC
Q 045936 39 RRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMP----V-MDGIEATKAMRAMKVESK-IVGVTSRNS 110 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~----~-~~g~~~~~~l~~~~~~~~-ii~lt~~~~ 110 (145)
.......|++.|+.+. -+.++...+..+.. -++|.|=+|...- . .....+++.+........ -++..+-.+
T Consensus 976 ~~~~~~~l~~~G~~~~lddfg~g~~~~~~l~~-~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iaegVEt 1054 (1092)
T PRK09776 976 ASRLVQKLRLAGCRVVLSDFGRGLSSFNYLKA-FMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGPVEL 1054 (1092)
T ss_pred HHHHHHHHHHCCcEEEEcCCCCCchHHHHHHh-CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEecccCC
Confidence 3445567788898865 45566667777776 5799999995431 1 123445555544222222 234556677
Q ss_pred hHHHHHHHHhcccE----EeeCCCCHHHHHHHHH
Q 045936 111 ETEREVFMQAGLDL----CYTKPLTMAKIVPLLE 140 (145)
Q Consensus 111 ~~~~~~~~~~g~~~----~l~kP~~~~~l~~~l~ 140 (145)
.+....+.+.|++. |+.||...+++....+
T Consensus 1055 ~~~~~~l~~~g~~~~QG~~~~~P~~~~~~~~~~~ 1088 (1092)
T PRK09776 1055 PLVLDTLSGIGVDLAYGYAIARPQPLDLLLNSSY 1088 (1092)
T ss_pred HHHHHHHHHcCCCEEeccccCCCCcHHHHHhhhh
Confidence 77788888999854 5889999998877654
No 305
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=75.78 E-value=14 Score=25.07 Aligned_cols=24 Identities=8% Similarity=-0.108 Sum_probs=13.3
Q ss_pred HHHHHHhcccEEe--eCCCCHHHHHH
Q 045936 114 REVFMQAGLDLCY--TKPLTMAKIVP 137 (145)
Q Consensus 114 ~~~~~~~g~~~~l--~kP~~~~~l~~ 137 (145)
...+.+.|..-.+ ..|.++++...
T Consensus 96 i~~~~~~g~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 96 VKAAKKYGKEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred HHHHHHcCCeEEEEEeCCCCHHHHHH
Confidence 3344455655543 56767666655
No 306
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.69 E-value=34 Score=26.26 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=47.8
Q ss_pred EEEEEeCCHH---HHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCC-CCCCCH--HHHHHHHHhh-CCCC
Q 045936 28 FALVVDDDPM---IRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDME-MPVMDG--IEATKAMRAM-KVES 100 (145)
Q Consensus 28 ~vlii~~~~~---~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~-~~~~~g--~~~~~~l~~~-~~~~ 100 (145)
+|.++..+.. ..+.++.+.+..|..+..+.+..+....+......|+||+|.- +...+. .+.+..+... .+.-
T Consensus 169 ~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~ 248 (374)
T PRK14722 169 KVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQ 248 (374)
T ss_pred eEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCe
Confidence 5666665554 2355555666667766666655554444443245799999963 222222 2344444332 2334
Q ss_pred cEEEEecCCChHHHH
Q 045936 101 KIVGVTSRNSETERE 115 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~ 115 (145)
.+++++.........
T Consensus 249 ~lLVLsAts~~~~l~ 263 (374)
T PRK14722 249 RLLLLNATSHGDTLN 263 (374)
T ss_pred EEEEecCccChHHHH
Confidence 467777666555543
No 307
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=75.59 E-value=28 Score=25.28 Aligned_cols=81 Identities=7% Similarity=-0.064 Sum_probs=51.8
Q ss_pred EEEeCCHHHH---HHHHHHHHhcCCeEEE-------ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCC
Q 045936 30 LVVDDDPMIR---RIHSMILKSVGFKVEV-------AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVE 99 (145)
Q Consensus 30 lii~~~~~~~---~~l~~~l~~~g~~v~~-------~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~ 99 (145)
++.++++.-. ..++..+++.|..++. ..+....+..++. ..||+|++-.. ..++..+++.+++....
T Consensus 142 il~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~-~~pd~v~~~~~--~~~~~~~~~~~~~~G~~ 218 (312)
T cd06346 142 TTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA-GGPDALVVIGY--PETGSGILRSAYEQGLF 218 (312)
T ss_pred EEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh-cCCCEEEEecc--cchHHHHHHHHHHcCCC
Confidence 4445554433 4456677777877652 2466777888876 57999987543 34778888888887766
Q ss_pred CcEEEEecCCChHH
Q 045936 100 SKIVGVTSRNSETE 113 (145)
Q Consensus 100 ~~ii~lt~~~~~~~ 113 (145)
.+++......++..
T Consensus 219 ~~~~~~~~~~~~~~ 232 (312)
T cd06346 219 DKFLLTDGMKSDSF 232 (312)
T ss_pred CceEeeccccChHH
Confidence 67765544444443
No 308
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=75.53 E-value=25 Score=26.23 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=44.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhc--CCe---E-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHH
Q 045936 28 FALVVDDDPMIRRIHSMILKSV--GFK---V-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~--g~~---v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~ 89 (145)
.|++++-+....+.=+.++... ||. | ....|+...++.+.. +++|+||+|.+-|-+++-.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~-~~~dVii~dssdpvgpa~~l 213 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE-NPFDVIITDSSDPVGPACAL 213 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc-CCceEEEEecCCccchHHHH
Confidence 4788887777777767777543 443 3 255588888888865 68999999998888776543
No 309
>PRK01362 putative translaldolase; Provisional
Probab=75.36 E-value=26 Score=24.66 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=51.0
Q ss_pred HHHhcCCeE--EEecCHHHHHHHHhcCCCccEEEEeC-CCCCCCHHHHHHHHHhh----CCCCcEEEEecCCChHHHHHH
Q 045936 45 ILKSVGFKV--EVAENGKEAVDLFRTGAKFHIVFIDM-EMPVMDGIEATKAMRAM----KVESKIVGVTSRNSETEREVF 117 (145)
Q Consensus 45 ~l~~~g~~v--~~~~~~~~~l~~l~~~~~~dlil~d~-~~~~~~g~~~~~~l~~~----~~~~~ii~lt~~~~~~~~~~~ 117 (145)
.|+..|+.+ +.+-+..+++.....+-.+=-.+++- .-.+.+|+++++.+.+. ...+ -|+.++..+......+
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~t-kilaAS~r~~~~v~~~ 174 (214)
T PRK01362 96 ALSKEGIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDT-EIIAASVRHPMHVLEA 174 (214)
T ss_pred HHHHCCCceEEeeecCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCc-EEEEeecCCHHHHHHH
Confidence 455667653 45667888877776632222223331 22356888888877663 2233 4556777788888889
Q ss_pred HHhcccEEe
Q 045936 118 MQAGLDLCY 126 (145)
Q Consensus 118 ~~~g~~~~l 126 (145)
...|++.+-
T Consensus 175 ~~~G~d~iT 183 (214)
T PRK01362 175 ALAGADIAT 183 (214)
T ss_pred HHcCCCEEe
Confidence 999999653
No 310
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.33 E-value=30 Score=25.45 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=59.1
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hcCC--eE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 28 FALVVDDDPMIRRIHSMILK----SVGF--KV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~----~~g~--~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
.|||-|++-.....+...++ ..++ .+ +.+.+.+++.+.+.. .+|+|++|- |...+--+.++.++ ...
T Consensus 166 ~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~--gaDiI~LDn-~s~e~l~~av~~~~---~~~ 239 (281)
T PRK06106 166 AVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL--GVDAVLLDN-MTPDTLREAVAIVA---GRA 239 (281)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc--CCCEEEeCC-CCHHHHHHHHHHhC---CCc
Confidence 36777776555544444443 2232 23 489999999999876 489999993 33222233333332 222
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
++-.++.-+.+.+......|+|.+-
T Consensus 240 -~leaSGGI~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 240 -ITEASGRITPETAPAIAASGVDLIS 264 (281)
T ss_pred -eEEEECCCCHHHHHHHHhcCCCEEE
Confidence 3677888898999999999998763
No 311
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=75.21 E-value=26 Score=25.85 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=35.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCe---E-EEecCHHHHHHHHhcCCCccEEEEeC
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFK---V-EVAENGKEAVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~---v-~~~~~~~~~l~~l~~~~~~dlil~d~ 79 (145)
.|.-+|-.....+..+.-+.-+|+. + ....|.-+.+..++.+..||+||+|-
T Consensus 148 ~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 148 EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 6899999998888888888878753 2 25667777777665556899999994
No 312
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=75.14 E-value=26 Score=24.65 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=25.7
Q ss_pred CCCCCCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 045936 19 NPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVE 54 (145)
Q Consensus 19 ~~~~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~ 54 (145)
...++..+++|+|.+....+...+...|...|+.|.
T Consensus 10 ~~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~ 45 (251)
T PLN00141 10 EDAENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVK 45 (251)
T ss_pred cccccccCCeEEEECCCcHHHHHHHHHHHhCCCEEE
Confidence 334444566899999888888777777766787765
No 313
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=75.12 E-value=30 Score=25.40 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=50.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcC---C--eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCC-----HHHHHHHHHhh
Q 045936 28 FALVVDDDPMIRRIHSMILKSVG---F--KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMD-----GIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g---~--~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~-----g~~~~~~l~~~ 96 (145)
++.++|=++...+.-+..|.... + ++. ...|+.+-++.... .+|+||+|..-|... ..++.+..++.
T Consensus 102 ~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~--~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~ 179 (282)
T COG0421 102 RITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE--KFDVIIVDSTDPVGPAEALFTEEFYEGCRRA 179 (282)
T ss_pred eEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC--cCCEEEEcCCCCCCcccccCCHHHHHHHHHh
Confidence 67888888888888888875432 1 122 56666666665432 599999999888433 35677777776
Q ss_pred CCCCcEEEE
Q 045936 97 KVESKIVGV 105 (145)
Q Consensus 97 ~~~~~ii~l 105 (145)
-....|++.
T Consensus 180 L~~~Gi~v~ 188 (282)
T COG0421 180 LKEDGIFVA 188 (282)
T ss_pred cCCCcEEEE
Confidence 444445444
No 314
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=74.88 E-value=19 Score=30.57 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=46.2
Q ss_pred CccEEEEe-CCCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFID-MEMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d-~~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+-++|+| .++....+.+ +++.|.+-..++.+|+++.. .+.+...++.-+..|-.++++.+++...|.+++
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~--~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE--PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC--hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH
Confidence 57788888 4555555665 45555544445556666533 233545566677778788889999998887765
No 315
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=74.84 E-value=35 Score=26.01 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=40.6
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhcCCeEEEec---------CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH
Q 045936 27 YFALVVDDDPMI-----RRIHSMILKSVGFKVEVAE---------NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKA 92 (145)
Q Consensus 27 ~~vlii~~~~~~-----~~~l~~~l~~~g~~v~~~~---------~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~ 92 (145)
.+++|+-+.... ...+...|+..|+.+..++ +.+++++.++. ..+|+|| -+.+.+.++..+.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~II---aiGGGS~iD~aK~ 104 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKE-EKVDFIL---AVGGGSVIDSAKA 104 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHH-cCCCEEE---EeCChHHHHHHHH
Confidence 478888765333 3567778888787655443 34456666666 5689887 2456666676665
Q ss_pred H
Q 045936 93 M 93 (145)
Q Consensus 93 l 93 (145)
+
T Consensus 105 i 105 (382)
T cd08187 105 I 105 (382)
T ss_pred H
Confidence 5
No 316
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=74.77 E-value=37 Score=26.29 Aligned_cols=94 Identities=10% Similarity=0.074 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhC-CCCcEEEEecCCChH
Q 045936 35 DPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMK-VESKIVGVTSRNSET 112 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~-~~~~ii~lt~~~~~~ 112 (145)
|....+.+...|.+.||.++. .....|+++++.-.-... ..+..+.|++.. .+.+ +++++.....
T Consensus 12 N~~ds~~~~~~l~~~G~~~~~------------~~~~ADviiinTC~v~~~a~~~~~~~i~~~~~~~~~-vvv~GC~a~~ 78 (420)
T TIGR01578 12 NNGDSEIMKNSLAAYGHELVN------------NAEEADLAILNTCTVKNKTEDTMLYRIESLMRNGKH-VVVAGCMPQA 78 (420)
T ss_pred cHHHHHHHHHHHHHCCCEECC------------CcccCCEEEEEeeeeeehHHHHHHHHHHHHHhcCCC-EEEECCcCcc
Confidence 445567788889889987652 123579999876433322 233444444421 2333 5555554433
Q ss_pred HHHHHHH-hcccEEeeCCCCHHHHHHHHHHH
Q 045936 113 EREVFMQ-AGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 113 ~~~~~~~-~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
....+.. .++.. +..+-...++...+...
T Consensus 79 ~~e~~~~~~~~~~-~~g~~~~~~l~~~~~~~ 108 (420)
T TIGR01578 79 QKESVYDNGSVAS-VLGVQAIDRLVEVVEET 108 (420)
T ss_pred ChHHHHhhCCccE-EEcCCCHHHHHHHHHHH
Confidence 3333332 23344 44577777777666543
No 317
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.70 E-value=22 Score=26.00 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=46.6
Q ss_pred ccEEEEeCCCCC-C-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 72 FHIVFIDMEMPV-M-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 72 ~dlil~d~~~~~-~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
.|-|++.-+.-. . +-.+.++..|+..+...+|-++.. +.+....+...|+|.....+++++.+....+.
T Consensus 158 ~d~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~-tleea~~A~~~gaDyI~lD~~~~e~l~~~~~~ 228 (277)
T PRK08072 158 YDGVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETE-TEEQVREAVAAGADIIMFDNRTPDEIREFVKL 228 (277)
T ss_pred CceEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHh
Confidence 566665544321 1 234566777776554455666554 55667788899999998889999999887764
No 318
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.67 E-value=13 Score=29.61 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=42.5
Q ss_pred CccEEEEe-CCCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFID-MEMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d-~~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+.++|+| .++-..+..+ +++.|.+-.+++.+|+.|. ++......+..-+.-|-.+|++.+++...++.++
T Consensus 119 ~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt--d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il 191 (509)
T PRK14958 119 RFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT--DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLL 191 (509)
T ss_pred CcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC--ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Confidence 57788888 3443444444 4444444334566665553 2333333355555666678999999988887765
No 319
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.66 E-value=25 Score=26.01 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=48.0
Q ss_pred ccEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 72 FHIVFIDMEMPV--MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 72 ~dlil~d~~~~~--~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
.|.|++.-+.-. .+-.+.++..|+..|..+|.+-. .+.+....+++.|+|..+.-.++++++...+..
T Consensus 170 sd~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv--~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~ 239 (289)
T PRK07896 170 GDAALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEV--DSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQR 239 (289)
T ss_pred cceeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEc--CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 465555443211 13346778888776666654433 566678888999999999999999999999874
No 320
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=74.57 E-value=38 Score=26.31 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=56.3
Q ss_pred cEEEEEeCCHHHH---HHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCC-CCCCCHHHHHHHHHhh----CC
Q 045936 27 YFALVVDDDPMIR---RIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDME-MPVMDGIEATKAMRAM----KV 98 (145)
Q Consensus 27 ~~vlii~~~~~~~---~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~-~~~~~g~~~~~~l~~~----~~ 98 (145)
.+|-++.-|-... +.|+.+-.-+|..+..+.+.+++...+..-...|+||+|.. .+..+. ..+..++.. ++
T Consensus 234 ~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~-~~i~el~~~~~~~~~ 312 (407)
T COG1419 234 KKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVILVDTAGRSQYDK-EKIEELKELIDVSHS 312 (407)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEEEEeCCCCCccCH-HHHHHHHHHHhcccc
Confidence 4565555443222 33444555567888778888877666554345799999963 333333 344445443 22
Q ss_pred CCcEEEEecCCChHHHHHHH----HhcccEE-eeC
Q 045936 99 ESKIVGVTSRNSETEREVFM----QAGLDLC-YTK 128 (145)
Q Consensus 99 ~~~ii~lt~~~~~~~~~~~~----~~g~~~~-l~k 128 (145)
.-..+++++......+...+ ..+.++| ++|
T Consensus 313 i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TK 347 (407)
T COG1419 313 IEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTK 347 (407)
T ss_pred ceEEEEEecCcchHHHHHHHHHhccCCcceeEEEc
Confidence 33346777766555554443 4456666 455
No 321
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=74.55 E-value=12 Score=27.45 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=38.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEE-------ecCHHHHHHHHhcCCCccEEEEeCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEV-------AENGKEAVDLFRTGAKFHIVFIDME 80 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~-------~~~~~~~l~~l~~~~~~dlil~d~~ 80 (145)
|+|||.+.+......|...|. .++.+.. ..+.+...+.+++ ..||+||--.-
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~-~~PDvVIn~AA 59 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRE-TRPDVVINAAA 59 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHh-hCCCEEEECcc
Confidence 459999999999999999997 4466553 3466667777776 57999985443
No 322
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=74.49 E-value=26 Score=24.43 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=42.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEe-cCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVA-ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~-~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii~ 104 (145)
++++|.+....+...+...|...|+.|... .+.+.+ ..+......++.++..++.+.+.+ ++++.+.+....+-+++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi 79 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERL-QELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLV 79 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 367888888888888888887889887644 444333 222211112333333344444333 35555555443444444
Q ss_pred E
Q 045936 105 V 105 (145)
Q Consensus 105 l 105 (145)
.
T Consensus 80 ~ 80 (248)
T PRK10538 80 N 80 (248)
T ss_pred E
Confidence 3
No 323
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.43 E-value=31 Score=25.26 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=55.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hc-C-CeE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh-hCCCC
Q 045936 28 FALVVDDDPMIRRIHSMILK---SV-G-FKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA-MKVES 100 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~---~~-g-~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~-~~~~~ 100 (145)
.|||-+++-.....+...+. +. + ..+ +.+++.+++.+.+.. .+|.|.+|- + +.+-++.+.+ ..+.+
T Consensus 162 ~ilikdnHi~~~g~v~~av~~~r~~~~~~~I~VEv~tleea~eA~~~--gaD~I~LD~-~----~~e~l~~~v~~~~~~i 234 (277)
T PRK05742 162 AFLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVESLDELRQALAA--GADIVMLDE-L----SLDDMREAVRLTAGRA 234 (277)
T ss_pred cEEecHHHHHHhCCHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHc--CCCEEEECC-C----CHHHHHHHHHHhCCCC
Confidence 36766666544433333221 22 1 223 378999999888865 489999872 2 3333443333 22455
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
|+. .++.-+.+........|++.+-
T Consensus 235 ~le-AsGGIt~~ni~~~a~tGvD~Is 259 (277)
T PRK05742 235 KLE-ASGGINESTLRVIAETGVDYIS 259 (277)
T ss_pred cEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 544 4556678888888999998864
No 324
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=74.06 E-value=17 Score=22.06 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCC-C---CCHHHHHHHHHhhC-CCCcEEEEecCC
Q 045936 35 DPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP-V---MDGIEATKAMRAMK-VESKIVGVTSRN 109 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~-~---~~g~~~~~~l~~~~-~~~~ii~lt~~~ 109 (145)
+....+.+...|...||.++.. ....|+++++.=-= . ...+..++.+++.. |. +.|++++..
T Consensus 12 N~~Dse~i~~~l~~~G~~~~~~------------~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~-~~ivv~GC~ 78 (98)
T PF00919_consen 12 NQYDSERIASILQAAGYEIVDD------------PEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPG-AKIVVTGCM 78 (98)
T ss_pred cHHHHHHHHHHHHhcCCeeecc------------cccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCC-CEEEEEeCc
Confidence 4455678888999999877532 13579999885221 1 22344555555544 43 455566554
Q ss_pred ChHHHHH
Q 045936 110 SETEREV 116 (145)
Q Consensus 110 ~~~~~~~ 116 (145)
.......
T Consensus 79 aq~~~~~ 85 (98)
T PF00919_consen 79 AQRYGEE 85 (98)
T ss_pred cccChHH
Confidence 4433333
No 325
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=74.02 E-value=30 Score=24.86 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=41.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 72 FHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 72 ~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.|++++-......-+..+++.+. .++|+|. +... ........|..+++.++.+.+++...+.++++
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a---~G~Pvi~-~~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA---AGVPVIA-SDIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH---CCCCEEE-CCCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 47777643323334455555543 3466654 3322 23445566777899999999999999988764
No 326
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=73.91 E-value=15 Score=29.55 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=35.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCH---HHHHHHHhcCCCccEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENG---KEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~---~~~l~~l~~~~~~dlil~d 78 (145)
++||++|........+.++|+..|+.+..+++. ...+..+.. ..|+.|++.
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~-~~~~~IIlS 55 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT-MSNPVLMLS 55 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHh-cCcCEEEEc
Confidence 479999999999999999999999776654431 112333333 346777765
No 327
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=73.90 E-value=17 Score=24.51 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=31.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEE
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFI 77 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~ 77 (145)
||++|........+..+|++.|+++......+........ ..+|.+|+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~-~~~dgvil 48 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELEL-LNPDAIVI 48 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhh-cCCCEEEE
Confidence 5788888888889999999999876644433222111122 34887665
No 328
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.84 E-value=31 Score=25.46 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=46.9
Q ss_pred ccEEEEeCCC-CCC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 72 FHIVFIDMEM-PVM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 72 ~dlil~d~~~-~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.|.|++.-+. .-. +-.+.++.+|+..+....|-+ ...+.++...+.+.|+|....-+++++++...++.+
T Consensus 166 ~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~V-Ev~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 166 DDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEV-ETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred hheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEE-ECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 4655554332 111 234566777776553344444 445677788899999999999999999999988753
No 329
>PRK13561 putative diguanylate cyclase; Provisional
Probab=73.82 E-value=31 Score=28.09 Aligned_cols=99 Identities=14% Similarity=0.204 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCeEE--EecCHHHHHHHHhc--CCCccEEEEeCC----CCCCCHHHHHHHHHhhC--CCCcEEEEec
Q 045936 38 IRRIHSMILKSVGFKVE--VAENGKEAVDLFRT--GAKFHIVFIDME----MPVMDGIEATKAMRAMK--VESKIVGVTS 107 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~--~~~~dlil~d~~----~~~~~g~~~~~~l~~~~--~~~~ii~lt~ 107 (145)
....+...|++.|+.+. .+.++-..+..+.. .-++|.+=+|-. ++.. ..+++.+-... .++. ++..+
T Consensus 535 ~~~~~~~~l~~~G~~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~--~~~v~~i~~~a~~l~i~-viAeg 611 (651)
T PRK13561 535 AAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPED--DSMVAAIIMLAQSLNLQ-VIAEG 611 (651)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCC--HHHHHHHHHHHHHCCCc-EEEec
Confidence 34455666778898865 45555555555532 146898888843 2221 23455444422 2333 44566
Q ss_pred CCChHHHHHHHHhcccE----EeeCCCCHHHHHHHH
Q 045936 108 RNSETEREVFMQAGLDL----CYTKPLTMAKIVPLL 139 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~----~l~kP~~~~~l~~~l 139 (145)
..+.+....+.+.|++. |+.||.+.+++.+..
T Consensus 612 VE~~~~~~~l~~~g~d~~QG~~~~~P~~~~~~~~~~ 647 (651)
T PRK13561 612 VETEAQRDWLLKAGVGIAQGFLFARALPIEIFEERY 647 (651)
T ss_pred CCCHHHHHHHHhcCCCEEeCCcccCCCCHHHHHHHh
Confidence 77788888888999865 589999999987643
No 330
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=73.71 E-value=25 Score=25.15 Aligned_cols=77 Identities=12% Similarity=0.209 Sum_probs=51.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCH-----HHHHHHHH
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG-------FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG-----IEATKAMR 94 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g-------~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g-----~~~~~~l~ 94 (145)
.+|-++|=++...+..+.++.... +++ ...|+...++.... ..+|+|++|..-|...+ .++.+.++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~ 178 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKETQE-EKYDVIIVDLTDPDGPAPNLFTREFYQLCK 178 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHTSSS-T-EEEEEEESSSTTSCGGGGSSHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHhccC-CcccEEEEeCCCCCCCcccccCHHHHHHHH
Confidence 478999999999999888875421 233 67788877776543 26999999998765543 46777777
Q ss_pred hhCCCCcEEEE
Q 045936 95 AMKVESKIVGV 105 (145)
Q Consensus 95 ~~~~~~~ii~l 105 (145)
+.-..-.++++
T Consensus 179 ~~L~~~Gv~v~ 189 (246)
T PF01564_consen 179 RRLKPDGVLVL 189 (246)
T ss_dssp HHEEEEEEEEE
T ss_pred hhcCCCcEEEE
Confidence 65333334443
No 331
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=73.68 E-value=33 Score=25.16 Aligned_cols=74 Identities=15% Similarity=0.062 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCeEEE-------ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCh
Q 045936 39 RRIHSMILKSVGFKVEV-------AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSE 111 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v~~-------~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~ 111 (145)
...++..+++.|..+.. ..+....+..+.. ..||.|++-. ....+..+++.+++.....++++.....+.
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~-~~pdaV~~~~--~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~ 226 (341)
T cd06341 150 AALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAA-AGADAIITVL--DAAVCASVLKAVRAAGLTPKVVLSGTCYDP 226 (341)
T ss_pred HHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHh-cCCCEEEEec--ChHHHHHHHHHHHHcCCCCCEEEecCCCCH
Confidence 34567777777865431 2456677777766 4699888653 233677899999998877777666555555
Q ss_pred HHHH
Q 045936 112 TERE 115 (145)
Q Consensus 112 ~~~~ 115 (145)
....
T Consensus 227 ~~~~ 230 (341)
T cd06341 227 ALLA 230 (341)
T ss_pred HHHH
Confidence 4443
No 332
>PLN02522 ATP citrate (pro-S)-lyase
Probab=73.62 E-value=50 Score=27.19 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=77.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcC--Ce-EE-Ee------cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC
Q 045936 28 FALVVDDDPMIRRIHSMILKSVG--FK-VE-VA------ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK 97 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g--~~-v~-~~------~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~ 97 (145)
+|-++.....+...+..++.+.| +. ++ .- .+..|.+..+.+...-.+|++=......++.++++.+++..
T Consensus 169 ~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~ 248 (608)
T PLN02522 169 SVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEALKQGK 248 (608)
T ss_pred cEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHHHHhc
Confidence 69999999999988888888765 33 22 21 45778888887644556777777777888999999998865
Q ss_pred CCCcEEEEe-cCCC-----------------------hHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 98 VESKIVGVT-SRNS-----------------------ETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 98 ~~~~ii~lt-~~~~-----------------------~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
...||+++- +... ......+.++|+ ..+-++++|...++++++
T Consensus 249 ~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv----~vv~s~~El~~~~~~~~~ 315 (608)
T PLN02522 249 VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGA----IVPTSFEALEAAIKETFE 315 (608)
T ss_pred CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCC----eEeCCHHHHHHHHHHHHH
Confidence 678888763 2222 112233345555 236788888888877653
No 333
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=73.21 E-value=33 Score=24.94 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=39.6
Q ss_pred HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 88 EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 88 ~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
..++.+|+..+....|.++. .+.+....+...|+|.+..-|++++.+...++.+
T Consensus 169 ~~v~~~r~~~~~~~~I~vev-~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEV-ETLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred HHHHHHHHhCCCCCeEEEec-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45677777765333444544 4567788888999999999999999998877643
No 334
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=73.18 E-value=29 Score=24.24 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=46.7
Q ss_pred CHHHHHHHHhcCCCcc-EEEEeCCCCCC-C--HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 58 NGKEAVDLFRTGAKFH-IVFIDMEMPVM-D--GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~d-lil~d~~~~~~-~--g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+..+..+.+.. ...+ +++.|.+-.+. . -+++++.+++. ...|+++-.+-.+.+....++..|+++++.
T Consensus 146 ~~~~~~~~~~~-~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEE-LGLEGIIYTDISRDGTLSGPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHh-CCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 44555565555 3466 77777754432 2 26777777765 467888778888888888888999999764
No 335
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.15 E-value=36 Score=27.24 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=39.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHH---H-------------hcCCeEEEecCHHHHHHHHhcCCCccEEEEeC--CCCCC-CH
Q 045936 26 PYFALVVDDDPMIRRIHSMIL---K-------------SVGFKVEVAENGKEAVDLFRTGAKFHIVFIDM--EMPVM-DG 86 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l---~-------------~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~--~~~~~-~g 86 (145)
+++|||+..+......++++= + +.||-=..+.-..+|++..+. ..+|+||+|. .|.+. +-
T Consensus 406 kfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~-~gfDVvLiDTAGR~~~~~~l 484 (587)
T KOG0781|consen 406 KFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARN-QGFDVVLIDTAGRMHNNAPL 484 (587)
T ss_pred CceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHh-cCCCEEEEeccccccCChhH
Confidence 457888888764433332211 1 112322233345677887776 5799999997 33322 22
Q ss_pred H-HHHHHHHhhCCCC
Q 045936 87 I-EATKAMRAMKVES 100 (145)
Q Consensus 87 ~-~~~~~l~~~~~~~ 100 (145)
+ .+.+.++...|+.
T Consensus 485 m~~l~k~~~~~~pd~ 499 (587)
T KOG0781|consen 485 MTSLAKLIKVNKPDL 499 (587)
T ss_pred HHHHHHHHhcCCCce
Confidence 2 3444445455554
No 336
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=73.08 E-value=15 Score=21.12 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=40.2
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHH
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVP 137 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~ 137 (145)
...+.+..+....++.+-.+|+. .+. + +..+....+||+.+.+...... ...+..|++.+.|.+
T Consensus 15 ~a~~~L~~~~~~~~~~l~~vDI~---~d~-~---l~~~Y~~~IPVl~~~~~~~~~~---------~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 15 EAKEILEEVAAEFPFELEEVDID---EDP-E---LFEKYGYRIPVLHIDGIRQFKE---------QEELKWRFDEEQLRA 78 (81)
T ss_dssp HHHHHHHHCCTTSTCEEEEEETT---TTH-H---HHHHSCTSTSEEEETT-GGGCT---------SEEEESSB-HHHHHH
T ss_pred HHHHHHHHHHhhcCceEEEEECC---CCH-H---HHHHhcCCCCEEEEcCcccccc---------cceeCCCCCHHHHHH
Confidence 34444554433346788899986 221 1 2334456899988866433222 456788999999988
Q ss_pred HHH
Q 045936 138 LLE 140 (145)
Q Consensus 138 ~l~ 140 (145)
.|+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 774
No 337
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.08 E-value=34 Score=25.02 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCeEEEecCHHHHHH--------HHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCC
Q 045936 38 IRRIHSMILKSVGFKVEVAENGKEAVD--------LFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v~~~~~~~~~l~--------~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
....+..+|+..|+.+.......+... .+.. ..+|++++ -+.||. +++.++.....+|++.+....
T Consensus 17 ~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~----iGGDGT-lL~a~~~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 17 LAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE-MDVDFIIA----IGGDGT-ILRIEHKTKKDIPILGINMGT 90 (277)
T ss_pred HHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc-cCCCEEEE----EeCcHH-HHHHHHhcCCCCeEEEEeCCC
Confidence 345566777778888765432211111 1111 24676664 266763 334444223467888775432
Q ss_pred ChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 110 SETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 110 ~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.+|+. .++++++...++++++
T Consensus 91 -------------lGFl~-~~~~~~~~~~l~~i~~ 111 (277)
T PRK03708 91 -------------LGFLT-EVEPEETFFALSRLLE 111 (277)
T ss_pred -------------CCccc-cCCHHHHHHHHHHHHc
Confidence 23343 4556777777766654
No 338
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=73.04 E-value=26 Score=23.75 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=56.2
Q ss_pred cccCCCCCCCCCcEEEEEeCCHHHHHHHHHHH-HhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCC--CCCCCHHHHHH
Q 045936 15 RISENPVSKNRPYFALVVDDDPMIRRIHSMIL-KSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDME--MPVMDGIEATK 91 (145)
Q Consensus 15 ~~~~~~~~~~~~~~vlii~~~~~~~~~l~~~l-~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~--~~~~~g~~~~~ 91 (145)
.+|.+.........|+++|+-..+.-.+-++| -+.|+.+..+.+-+--+..+.. ..|+-+++.-. .|..+|+ ..+
T Consensus 7 ~~Sv~A~~~~~n~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~-~NP~~LliSPGPG~P~DsGI-s~~ 84 (223)
T KOG0026|consen 7 IPSVVANSSKQNGPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKR-KNPRGLLISPGPGTPQDSGI-SLQ 84 (223)
T ss_pred ccchhhccccccCCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhh-cCCCeEEecCCCCCCccccc-hHH
Confidence 45555433333346888888877777777777 5668888777776666777766 46786666532 2343333 345
Q ss_pred HHHhhCCCCcEEEEe
Q 045936 92 AMRAMKVESKIVGVT 106 (145)
Q Consensus 92 ~l~~~~~~~~ii~lt 106 (145)
.++...+.+|++-+.
T Consensus 85 ~i~~f~~~iP~fGvC 99 (223)
T KOG0026|consen 85 TVLELGPLVPLFGVC 99 (223)
T ss_pred HHHHhCCCCceeeee
Confidence 556667778876554
No 339
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=72.84 E-value=38 Score=25.57 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=57.6
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhcCCeEEEe--cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 27 YFALVVDDDPM--------IRRIHSMILKSVGFKVEVA--ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 27 ~~vlii~~~~~--------~~~~l~~~l~~~g~~v~~~--~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
.+.+++++.+. ....++......+-.+... -+.++....+.. .|++++-......-|.-+++.+
T Consensus 225 ~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~---aDv~v~pS~~~E~f~~~~lEAm--- 298 (380)
T PRK15484 225 LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL---ADLVVVPSQVEEAFCMVAVEAM--- 298 (380)
T ss_pred eEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh---CCEEEeCCCCccccccHHHHHH---
Confidence 45666665321 2223444444444334322 234455554432 5887765433222233344433
Q ss_pred CCCCcEEEEecCCChHHHHHHHHhcccEE-eeCCCCHHHHHHHHHHHhh
Q 045936 97 KVESKIVGVTSRNSETEREVFMQAGLDLC-YTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~~~~~g~~~~-l~kP~~~~~l~~~l~~~~~ 144 (145)
..++|||....... .+....|..+| +..|.+++++...|.+++.
T Consensus 299 a~G~PVI~s~~gg~----~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 299 AAGKPVLASTKGGI----TEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred HcCCCEEEeCCCCc----HhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 33677765433222 33445677887 5679999999999987763
No 340
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=72.77 E-value=42 Score=26.01 Aligned_cols=77 Identities=25% Similarity=0.419 Sum_probs=50.3
Q ss_pred cEEEEEeCCHHHHHHHH--HHHHhcC---C---eEEEecCHHHHHHHHhcC-CCccEEEEeCCCCCCC------HHHHHH
Q 045936 27 YFALVVDDDPMIRRIHS--MILKSVG---F---KVEVAENGKEAVDLFRTG-AKFHIVFIDMEMPVMD------GIEATK 91 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~--~~l~~~g---~---~v~~~~~~~~~l~~l~~~-~~~dlil~d~~~~~~~------g~~~~~ 91 (145)
..|-.+|=||.+.+.-+ ..|+..+ + ++..+. ++|.+++++. ..+|.+|+|+--|..+ ..++..
T Consensus 314 ~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ 391 (508)
T COG4262 314 EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYR 391 (508)
T ss_pred ceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHH
Confidence 36888999998888777 5554321 2 244332 4666666642 4699999999777654 467777
Q ss_pred HHHhhCCCCcEEEE
Q 045936 92 AMRAMKVESKIVGV 105 (145)
Q Consensus 92 ~l~~~~~~~~ii~l 105 (145)
.++.+-....++++
T Consensus 392 ll~~~l~e~Gl~Vv 405 (508)
T COG4262 392 LLSRHLAETGLMVV 405 (508)
T ss_pred HHHHhcCcCceEEE
Confidence 77776544455544
No 341
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.59 E-value=43 Score=26.03 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=53.2
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhcCCeEEEecCHHHHHHHHhc---CCCccEEEEeCCCCCCCHHHHHHHHHh----h
Q 045936 27 YFALVVDDDPMI---RRIHSMILKSVGFKVEVAENGKEAVDLFRT---GAKFHIVFIDMEMPVMDGIEATKAMRA----M 96 (145)
Q Consensus 27 ~~vlii~~~~~~---~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~---~~~~dlil~d~~~~~~~g~~~~~~l~~----~ 96 (145)
.+|.+++-|+.. ...++.+-...|+.+..+.+..+....+.. ...+|+||+|.-=.....-+.+..++. .
T Consensus 235 ~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~ 314 (407)
T PRK12726 235 RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV 314 (407)
T ss_pred CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhcc
Confidence 478888877643 334555555567666666777665544332 124899999973211122233343333 2
Q ss_pred CCCCcEEEEecCCChHHHHHHH----HhcccEE-eeC
Q 045936 97 KVESKIVGVTSRNSETEREVFM----QAGLDLC-YTK 128 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~~~----~~g~~~~-l~k 128 (145)
.++..++++++..........+ ..+.+.+ ++|
T Consensus 315 ~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TK 351 (407)
T PRK12726 315 HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITK 351 (407)
T ss_pred CCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEc
Confidence 3443345555544444443332 2345554 454
No 342
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=72.40 E-value=8.1 Score=24.04 Aligned_cols=64 Identities=13% Similarity=0.216 Sum_probs=37.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCC--HHHHHHHHH
Q 045936 71 KFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT--MAKIVPLLE 140 (145)
Q Consensus 71 ~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~l~ 140 (145)
....|++-.. +| ...+.+.+..|.+||+++|.... ....-.+-.|+..++.++.. .+++.....
T Consensus 16 ~ak~Ivv~T~----sG-~ta~~isk~RP~~pIiavt~~~~-~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~ 81 (117)
T PF02887_consen 16 NAKAIVVFTE----SG-RTARLISKYRPKVPIIAVTPNES-VARQLSLYWGVYPVLIEEFDKDTEELIAEAL 81 (117)
T ss_dssp TESEEEEE-S----SS-HHHHHHHHT-TSSEEEEEESSHH-HHHHGGGSTTEEEEECSSHSHSHHHHHHHHH
T ss_pred CCCEEEEECC----Cc-hHHHHHHhhCCCCeEEEEcCcHH-HHhhhhcccceEEEEeccccccHHHHHHHHH
Confidence 3566665432 22 23456666788999999987543 23334477889887766554 555554443
No 343
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=72.18 E-value=42 Score=25.73 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=51.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe-EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK-VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~-v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
-+|+..|-++...+.++.-++.++.. +. ...|....+... ...+|+|.+|- .+.. .+++...-+.-..-.++.
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~--~~~fDvIdlDP--fGs~-~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR--NRKFHVIDIDP--FGTP-APFVDSAIQASAERGLLL 144 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh--CCCCCEEEeCC--CCCc-HHHHHHHHHhcccCCEEE
Confidence 47999999999999999988887753 32 334444444432 23599999986 3332 345544433333445777
Q ss_pred EecCCChH
Q 045936 105 VTSRNSET 112 (145)
Q Consensus 105 lt~~~~~~ 112 (145)
+|+.+...
T Consensus 145 vTaTD~~~ 152 (374)
T TIGR00308 145 VTATDTSA 152 (374)
T ss_pred EEecccHH
Confidence 77655444
No 344
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=72.04 E-value=23 Score=23.06 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=41.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHH-HHHHHHhcCCCccEEEEeCCCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGK-EAVDLFRTGAKFHIVFIDMEMP 82 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~-~~l~~l~~~~~~dlil~d~~~~ 82 (145)
.+.+|.+++.......-+..+|...|..+..+++.. +.-+.++ ..|+|+.-..-+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~---~ADIVvsAtg~~ 82 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH---DADVVVVGSPKP 82 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh---hCCEEEEecCCC
Confidence 466999999999999999999999999888777221 2222232 379999887655
No 345
>PRK10537 voltage-gated potassium channel; Provisional
Probab=71.81 E-value=44 Score=25.81 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=51.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-CHH------------------HHHHHHhcCCCccEEEEeCCCCCCCH
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-NGK------------------EAVDLFRTGAKFHIVFIDMEMPVMDG 86 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~~~------------------~~l~~l~~~~~~dlil~d~~~~~~~g 86 (145)
+-+++|++-.+.-+...+. |.+.|+.++... +.. +.++...- ...+.+++-..- +..-
T Consensus 240 k~HvII~G~g~lg~~v~~~-L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI-~~A~aVI~~t~d-D~~N 316 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLG-LRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGA-ARARAILALRDN-DADN 316 (393)
T ss_pred CCeEEEECCChHHHHHHHH-HHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCc-ccCCEEEEcCCC-hHHH
Confidence 4578889888766655444 555666554332 211 11111111 123444432221 1222
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
...+...|+..|+.++++.+. +++......+.|++..+.
T Consensus 317 l~ivL~ar~l~p~~kIIa~v~--~~~~~~~L~~~GaD~VIs 355 (393)
T PRK10537 317 AFVVLAAKEMSSDVKTVAAVN--DSKNLEKIKRVHPDMIFS 355 (393)
T ss_pred HHHHHHHHHhCCCCcEEEEEC--CHHHHHHHHhcCCCEEEC
Confidence 334455677777888876655 345567778899988664
No 346
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=71.73 E-value=35 Score=24.69 Aligned_cols=87 Identities=11% Similarity=0.184 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEe-CCCCCCC-HHHHHHHHHhhCCC-CcEEEEecCCChHHH
Q 045936 39 RRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFID-MEMPVMD-GIEATKAMRAMKVE-SKIVGVTSRNSETER 114 (145)
Q Consensus 39 ~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d-~~~~~~~-g~~~~~~l~~~~~~-~~ii~lt~~~~~~~~ 114 (145)
...+...-++.|.. ++.++|.+|+-+.+.. + ..+|=++ -++.+.. .++....|...-|. ..+|.-++-..++..
T Consensus 145 l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~-g-a~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv 222 (254)
T COG0134 145 LEELVDRAHELGMEVLVEVHNEEELERALKL-G-AKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDV 222 (254)
T ss_pred HHHHHHHHHHcCCeeEEEECCHHHHHHHHhC-C-CCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Confidence 35555566678987 4589999999888875 2 4555333 2222221 23445555554443 334444677788999
Q ss_pred HHHHHhcccEEee
Q 045936 115 EVFMQAGLDLCYT 127 (145)
Q Consensus 115 ~~~~~~g~~~~l~ 127 (145)
......|+++||.
T Consensus 223 ~~l~~~ga~a~LV 235 (254)
T COG0134 223 RRLAKAGADAFLV 235 (254)
T ss_pred HHHHHcCCCEEEe
Confidence 9999999999985
No 347
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=71.22 E-value=36 Score=24.60 Aligned_cols=65 Identities=9% Similarity=0.059 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCccEEEEeC---CC-CC---CCHHHHHHHHHhhCCCCcEEE-EecCCC-----hHHHHHHHHhcccE
Q 045936 59 GKEAVDLFRTGAKFHIVFIDM---EM-PV---MDGIEATKAMRAMKVESKIVG-VTSRNS-----ETEREVFMQAGLDL 124 (145)
Q Consensus 59 ~~~~l~~l~~~~~~dlil~d~---~~-~~---~~g~~~~~~l~~~~~~~~ii~-lt~~~~-----~~~~~~~~~~g~~~ 124 (145)
...+++.+.+.+..+++|+.. .. +. .-.+..+..+++.+ ++||++ -+.... ......|...||++
T Consensus 148 ~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~g 225 (260)
T TIGR01361 148 WLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADG 225 (260)
T ss_pred HHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCE
Confidence 344666665545578999875 22 21 12456677777654 688887 333333 44556788999997
No 348
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=71.18 E-value=28 Score=25.70 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=40.1
Q ss_pred CHHHHHHHHHhhCCCCcEE--EEecCCChHHHHHHHHhcccEEe-----eCCCCHHHHHHHHHHH
Q 045936 85 DGIEATKAMRAMKVESKIV--GVTSRNSETEREVFMQAGLDLCY-----TKPLTMAKIVPLLEEL 142 (145)
Q Consensus 85 ~g~~~~~~l~~~~~~~~ii--~lt~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~l~~~ 142 (145)
.++++++.+++.. ..|++ ....-..++....+++.|++.++ .+.-++.+....+.+.
T Consensus 190 ~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~a 253 (293)
T PRK04180 190 APYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEA 253 (293)
T ss_pred CCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHH
Confidence 4678888887754 47887 55666689999999999999974 3334566555555443
No 349
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=71.03 E-value=20 Score=27.49 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=30.6
Q ss_pred HHHHHhcCCCccEEE-EeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCC
Q 045936 62 AVDLFRTGAKFHIVF-IDMEMPVMDGIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 62 ~l~~l~~~~~~dlil-~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
..+.+.. .+||++| +| .|+-+ +.+.+++|+..|+.|+|-+.++.
T Consensus 77 ~~~~i~~-~kpD~~i~ID--sPdFn-l~vak~lrk~~p~i~iihYV~Ps 121 (381)
T COG0763 77 LVRYILA-NKPDVLILID--SPDFN-LRVAKKLRKAGPKIKIIHYVSPS 121 (381)
T ss_pred HHHHHHh-cCCCEEEEeC--CCCCc-hHHHHHHHHhCCCCCeEEEECcc
Confidence 3343334 5789554 44 34443 67899999999999999887766
No 350
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=71.02 E-value=41 Score=25.12 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=44.6
Q ss_pred cEEEEEeCCHHHH---HHHHHHHHhcCCeEEEec---CH----HHHHHHHhcCCCccEEEEeCCC--CCCCH-HHHHHHH
Q 045936 27 YFALVVDDDPMIR---RIHSMILKSVGFKVEVAE---NG----KEAVDLFRTGAKFHIVFIDMEM--PVMDG-IEATKAM 93 (145)
Q Consensus 27 ~~vlii~~~~~~~---~~l~~~l~~~g~~v~~~~---~~----~~~l~~l~~~~~~dlil~d~~~--~~~~g-~~~~~~l 93 (145)
.+|++++.|.... +.+..+-...|..+.... +. .+++..... ..+|+||+|.-= +..+. ++-++.+
T Consensus 143 ~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~-~~~D~ViIDTaGr~~~~~~l~~eL~~~ 221 (318)
T PRK10416 143 KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA-RGIDVLIIDTAGRLHNKTNLMEELKKI 221 (318)
T ss_pred CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 4788888776433 234444555565544322 22 233433344 469999999732 21111 2222332
Q ss_pred Hh-------hCCCCcEEEEecCCChHHHHHH
Q 045936 94 RA-------MKVESKIVGVTSRNSETEREVF 117 (145)
Q Consensus 94 ~~-------~~~~~~ii~lt~~~~~~~~~~~ 117 (145)
.+ ..|+..++++.+.........+
T Consensus 222 ~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a 252 (318)
T PRK10416 222 KRVIKKADPDAPHEVLLVLDATTGQNALSQA 252 (318)
T ss_pred HHHHhhhcCCCCceEEEEEECCCChHHHHHH
Confidence 22 2344456777666555444343
No 351
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=71.01 E-value=32 Score=26.59 Aligned_cols=89 Identities=20% Similarity=0.176 Sum_probs=0.0
Q ss_pred ecCHHHHHHHHhcCCCccEEEEeCCCC--CCCHHHHHHHHHhhCCCCcEE--EEecCCChHHHHHHHHhcccEEeeCCCC
Q 045936 56 AENGKEAVDLFRTGAKFHIVFIDMEMP--VMDGIEATKAMRAMKVESKIV--GVTSRNSETEREVFMQAGLDLCYTKPLT 131 (145)
Q Consensus 56 ~~~~~~~l~~l~~~~~~dlil~d~~~~--~~~g~~~~~~l~~~~~~~~ii--~lt~~~~~~~~~~~~~~g~~~~l~kP~~ 131 (145)
+.+.+++++.++.-...+..++...++ -..|.++++.|++.+++.++. +-+..........+.+.|++.+......
T Consensus 181 ~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea 260 (391)
T PRK13307 181 LPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLA 260 (391)
T ss_pred CCCHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccC
Q ss_pred HH-HHHHHHHHHhh
Q 045936 132 MA-KIVPLLEELQK 144 (145)
Q Consensus 132 ~~-~l~~~l~~~~~ 144 (145)
.. .+.++++..-+
T Consensus 261 ~~~ti~~ai~~akk 274 (391)
T PRK13307 261 PISTIEKAIHEAQK 274 (391)
T ss_pred CHHHHHHHHHHHHH
No 352
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=70.97 E-value=40 Score=25.01 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=58.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe--EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK--VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
..+++++++.+. ...+...++..|.. +......++....+. ..|++++-... ..-|..+++.+. .++|+|
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~---~adi~v~pS~~-Eg~~~~~lEAma---~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ---ALDLFVLPSLA-EGISNTILEAMA---SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH---hcCEEEecccc-ccCchHHHHHHH---cCCCEE
Confidence 346666666543 34556666655532 332222333434333 25776653322 223444555443 356776
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+. .... ..+....|..+++..|-+++++...+.++++
T Consensus 301 ~s-~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 AT-AVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred Ec-CCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 53 3222 2334556778899999999999999987653
No 353
>PRK07695 transcriptional regulator TenI; Provisional
Probab=70.81 E-value=31 Score=23.61 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=45.9
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPV-------MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~-------~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
.+++.+++.+.... ..|.+++....+. ..|++.++.+.... .+|++++.+- +.+....++..|++.+
T Consensus 101 s~~s~e~a~~a~~~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~-~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEKN--GADYVVYGHVFPTDCKKGVPARGLEELSDIARAL-SIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHHc--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 67787887665544 4788876643221 12567777776543 5788877665 7788888999999886
No 354
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=70.68 E-value=44 Score=25.34 Aligned_cols=67 Identities=10% Similarity=0.161 Sum_probs=44.7
Q ss_pred cEEEEe-CCCCCCCHHHHHHHHHhhCCCCcEEEE-ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 73 HIVFID-MEMPVMDGIEATKAMRAMKVESKIVGV-TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 73 dlil~d-~~~~~~~g~~~~~~l~~~~~~~~ii~l-t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+.++++ ..+.-.+--+++..+ . ..+.++.. .+..+.......++.|+++.+.+|-++.++.+....+
T Consensus 90 ~~viv~~~dW~iIPlEnlIA~~-~--~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~ 158 (344)
T PRK02290 90 DYVIVEGRDWTIIPLENLIADL-G--QSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALI 158 (344)
T ss_pred CEEEEECCCCcEecHHHHHhhh-c--CCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHH
Confidence 544444 344445556677777 2 24455444 3444555666779999999999999999998877654
No 355
>PLN02775 Probable dihydrodipicolinate reductase
Probab=70.67 E-value=40 Score=24.88 Aligned_cols=104 Identities=8% Similarity=0.019 Sum_probs=62.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe------------------------cCHHHHHHHHhcCCCccEEEEeCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVA------------------------ENGKEAVDLFRTGAKFHIVFIDME 80 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~------------------------~~~~~~l~~l~~~~~~dlil~d~~ 80 (145)
..++|++.+-...+-......+...++.++.+ ++.++++..+.. ..||+|++|..
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~-~~~~~VvIDFT 88 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKA-EYPNLIVVDYT 88 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhc-cCCCEEEEECC
Confidence 34688888888777777666554466654421 445555544443 36999999998
Q ss_pred CCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHh-cccEEeeCCCCH
Q 045936 81 MPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQA-GLDLCYTKPLTM 132 (145)
Q Consensus 81 ~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~-g~~~~l~kP~~~ 132 (145)
.|.. ..+.++..... .+|+++-|+.-+.+........ ++-.++..+++.
T Consensus 89 ~P~a-~~~~~~~~~~~--g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 89 LPDA-VNDNAELYCKN--GLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred ChHH-HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 8753 23344443333 5677777766666655544443 444555556655
No 356
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=70.62 E-value=34 Score=23.98 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=7.0
Q ss_pred EEEEeCCCCCCC
Q 045936 74 IVFIDMEMPVMD 85 (145)
Q Consensus 74 lil~d~~~~~~~ 85 (145)
-|++|+...+.+
T Consensus 58 ~v~~DLK~~Di~ 69 (216)
T PRK13306 58 IIVADTKIADAG 69 (216)
T ss_pred EEEEEEeecCCc
Confidence 356666665554
No 357
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=70.62 E-value=49 Score=25.82 Aligned_cols=96 Identities=9% Similarity=0.077 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC----HHHH---HHHHHhhCCCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD----GIEA---TKAMRAMKVESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~----g~~~---~~~l~~~~~~~~ii~lt 106 (145)
-|....+.+...|...||.++.- ....|+++++.-.-..+ ..+. ++.+++..|..+|+ ++
T Consensus 15 ~N~~ds~~~~~~l~~~g~~~~~~------------~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vv-vg 81 (444)
T PRK14325 15 MNEYDSSKMADLLGAEGYELTDD------------PEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIG-VG 81 (444)
T ss_pred CcHHHHHHHHHHHHHCcCEECCC------------cCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEE-EE
Confidence 34556678888888889877521 13479999986443222 2223 33445556666554 55
Q ss_pred cCCChHHHHHHHH-hcccEEeeCCCCHHHHHHHHHHH
Q 045936 107 SRNSETEREVFMQ-AGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 107 ~~~~~~~~~~~~~-~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+.........++. ...-|++..+-....+...+...
T Consensus 82 Gc~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~ 118 (444)
T PRK14325 82 GCVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARA 118 (444)
T ss_pred CchhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHH
Confidence 5444444445543 33334566677767666666544
No 358
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=70.59 E-value=22 Score=23.54 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=26.8
Q ss_pred CCccEEEEeCCCCCCC-H-------HHHHHHHHhhCCCCcEEEEecC
Q 045936 70 AKFHIVFIDMEMPVMD-G-------IEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 70 ~~~dlil~d~~~~~~~-g-------~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
..||+|++..-..+.. + ..+++.+++..|.++|++++..
T Consensus 56 ~~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~~~iil~~~~ 102 (177)
T cd01844 56 VPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLVSPR 102 (177)
T ss_pred cCCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcCCCEEEEecC
Confidence 4689998876555432 2 1456777777888999888754
No 359
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=70.44 E-value=37 Score=24.39 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=40.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe--EE-EecCHHHHHHHHhc----CCCccEEEEeCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK--VE-VAENGKEAVDLFRT----GAKFHIVFIDME 80 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~--v~-~~~~~~~~l~~l~~----~~~~dlil~d~~ 80 (145)
-+|.-+|-++.....-+..++..|+. +. ...+..+.+..+.. ...+|+|++|.+
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 37999999998888888888888843 43 45677777766532 137999999986
No 360
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.33 E-value=17 Score=30.23 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=43.0
Q ss_pred CccEEEEe-CCCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFID-MEMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d-~~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+-++|+| .++-.....+ +++.|.+-..++.+|++|+. ...+...+..-+.-|-.++++.+++...+++++
T Consensus 124 r~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte--p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 124 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD--PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred CceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC--hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHH
Confidence 47788888 3433434444 33433332335656666553 333444556666777788999999998887664
No 361
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.10 E-value=35 Score=25.12 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=48.3
Q ss_pred ccEEEEeCCCCC----C--CHHHHHHHHHhhCCC-CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 72 FHIVFIDMEMPV----M--DGIEATKAMRAMKVE-SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 72 ~dlil~d~~~~~----~--~g~~~~~~l~~~~~~-~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+|.|++.-+.-. . +-.+.++.+|+..|. .+| .....+.+....+.+.|+|-.+.-.++++++.+++..+
T Consensus 159 sd~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kI--eVEv~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~ 234 (281)
T PRK06543 159 SDAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHV--EVEVDRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELV 234 (281)
T ss_pred CceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcE--EEEeCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHh
Confidence 576655544322 1 234677777777663 333 33556777888889999999999999999999998754
No 362
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=70.00 E-value=26 Score=25.57 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=38.3
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
.+.++..|+..+.. +|.++ ..+.+....+.+.|++.....|++++.+...++.
T Consensus 171 ~~av~~~R~~~~~~-~IgVe-v~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~ 223 (272)
T cd01573 171 LKALARLRATAPEK-KIVVE-VDSLEEALAAAEAGADILQLDKFSPEELAELVPK 223 (272)
T ss_pred HHHHHHHHHhCCCC-eEEEE-cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 55677777766554 34444 4456777778899999988999999988776653
No 363
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=69.95 E-value=34 Score=23.83 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCcc-EEEEeCCCCCC-CH--HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhc-ccEEee
Q 045936 59 GKEAVDLFRTGAKFH-IVFIDMEMPVM-DG--IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAG-LDLCYT 127 (145)
Q Consensus 59 ~~~~l~~l~~~~~~d-lil~d~~~~~~-~g--~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g-~~~~l~ 127 (145)
..+..+.+.. ..++ +++.+.+-.+. .| +++++.+++.. ..|++.-.+-.+.+....+++.| +++.+.
T Consensus 148 ~~e~~~~~~~-~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFED-AGVKAIIYTDISRDGTLSGPNVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHh-cCCCEEEEeeecCcCCcCCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 3555566654 3456 77777654332 33 67888887754 48888888888888888898888 988763
No 364
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=69.90 E-value=47 Score=25.31 Aligned_cols=64 Identities=22% Similarity=0.176 Sum_probs=41.3
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhcCCeEEEe---------cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH
Q 045936 27 YFALVVDDDPM-----IRRIHSMILKSVGFKVEVA---------ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKA 92 (145)
Q Consensus 27 ~~vlii~~~~~-----~~~~l~~~l~~~g~~v~~~---------~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~ 92 (145)
.+++|+-+... ....+...|+..|..+..+ ++.+++.+.++. ..+|.|| -..+.+.++..+.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~Ii---avGGGS~iD~aK~ 101 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE-EGCDFVV---GLGGGSSMDTAKA 101 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH-cCCCEEE---EeCCccHHHHHHH
Confidence 47888877543 3356777787777665544 244566667776 5689888 2457777777665
Q ss_pred HH
Q 045936 93 MR 94 (145)
Q Consensus 93 l~ 94 (145)
+.
T Consensus 102 ia 103 (380)
T cd08185 102 IA 103 (380)
T ss_pred HH
Confidence 53
No 365
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=69.63 E-value=34 Score=23.66 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=54.1
Q ss_pred HHhcCCeE-EEecCHHHHHHHHhcCCCccEEEEeCCCC--CCCHHHHHHHHHhhC-CCCcEEEEecCCChHHHHHHHHhc
Q 045936 46 LKSVGFKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMP--VMDGIEATKAMRAMK-VESKIVGVTSRNSETEREVFMQAG 121 (145)
Q Consensus 46 l~~~g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~--~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~g 121 (145)
....|..+ ..+++.+++.+.... .++.+.+.-.-. ...+++.++.+++.. ...|++...+-...+....+...|
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~~~--g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G 194 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERALAL--GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG 194 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHHHc--CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC
Confidence 34567664 467788887666654 478776652111 122456777777654 467888888888889999999999
Q ss_pred ccEEe
Q 045936 122 LDLCY 126 (145)
Q Consensus 122 ~~~~l 126 (145)
+++++
T Consensus 195 a~gvi 199 (217)
T cd00331 195 ADAVL 199 (217)
T ss_pred CCEEE
Confidence 99974
No 366
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=69.60 E-value=51 Score=25.61 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeC---CCC-CCCHHHHHHHHHhhCCCCcEEEEecCCC
Q 045936 35 DPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDM---EMP-VMDGIEATKAMRAMKVESKIVGVTSRNS 110 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~---~~~-~~~g~~~~~~l~~~~~~~~ii~lt~~~~ 110 (145)
|....+.+...|...||.++. . ....|+++++. ... ....++.++.+++. ..+ |++++...
T Consensus 12 N~~ds~~~~~~l~~~g~~~~~-----------~-~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~--~~~-vvvgGc~a 76 (430)
T TIGR01125 12 NLVDSEVMLGILREAGYEVTP-----------N-YEDADYVIVNTCGFIEDARQESIDTIGELADA--GKK-VIVTGCLV 76 (430)
T ss_pred cHHHHHHHHHHHHHCcCEECC-----------C-cccCCEEEEeCCCccchHHHHHHHHHHHHHhc--CCC-EEEECCcc
Confidence 445567788888888887653 1 13479999984 112 12355666666544 234 55666555
Q ss_pred hHHHHHHHH-h-cccEEeeCCCCHHHHHHHHHH
Q 045936 111 ETEREVFMQ-A-GLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 111 ~~~~~~~~~-~-g~~~~l~kP~~~~~l~~~l~~ 141 (145)
......++. . +++. +..+-...++...+.+
T Consensus 77 ~~~pee~~~~~~~vd~-v~g~~~~~~l~~~~~~ 108 (430)
T TIGR01125 77 QRYKEELKEEIPEVHA-ITGSGDVENILNAIES 108 (430)
T ss_pred ccchHHHHhhCCCCcE-EECCCCHHHHHHHHHH
Confidence 444555544 3 4554 5566667777666544
No 367
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=69.50 E-value=35 Score=25.72 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=43.2
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEE------eeC-CCCHHHHHHHHHHHhh
Q 045936 87 IEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLC------YTK-PLTMAKIVPLLEELQK 144 (145)
Q Consensus 87 ~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~------l~k-P~~~~~l~~~l~~~~~ 144 (145)
++.++.+++... .+||+.+.+-.+.+...+.+.+||+.+ +.+ |.-..++..-+++.++
T Consensus 276 l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 446667766543 689999999999999999999999875 344 7766777777666553
No 368
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=69.47 E-value=53 Score=25.76 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCC----CCCCHHHHHHH---HHhhCCCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEM----PVMDGIEATKA---MRAMKVESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~----~~~~g~~~~~~---l~~~~~~~~ii~lt 106 (145)
-|....+.+...|...||.++.. ....|++|++.=- ........++. +++..|..+ |+++
T Consensus 18 ~N~~dse~~~~~l~~~G~~~~~~------------~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~-ivv~ 84 (445)
T PRK14340 18 MNQADSEIITALLQDEGYVPAAS------------EEDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLL-VGVL 84 (445)
T ss_pred CcHHHHHHHHHHHHHCcCEECCC------------cccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCE-EEEe
Confidence 45556678888888889887531 1347999988522 11223334333 333445444 4555
Q ss_pred cCCChHHHHHHHHh--cccEEeeCCCCHHHHHHHHHHH
Q 045936 107 SRNSETEREVFMQA--GLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 107 ~~~~~~~~~~~~~~--g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+..........+.. ++| ++.-+-....+...+.+.
T Consensus 85 GC~a~~~~~e~~~~~p~vd-~v~g~~~~~~i~~~~~~~ 121 (445)
T PRK14340 85 GCVPQYEREEMFSMFPVID-FLAGPDTYRVLPGLIADA 121 (445)
T ss_pred CcccccchHHHHhhCCCCc-EEECCCCHHHHHHHHHHH
Confidence 55444444444442 455 444566666666655543
No 369
>PRK07413 hypothetical protein; Validated
Probab=69.41 E-value=27 Score=26.88 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=30.9
Q ss_pred HHhcCCCccEEEEeCCCC-----CCCHHHHHHHHHhhCCCCcEEEEecCCChHHH
Q 045936 65 LFRTGAKFHIVFIDMEMP-----VMDGIEATKAMRAMKVESKIVGVTSRNSETER 114 (145)
Q Consensus 65 ~l~~~~~~dlil~d~~~~-----~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~ 114 (145)
.+.+ ..+|++++|=-+. =.+.-++++.|++.++.+-+| +|++..+...
T Consensus 120 ~i~s-g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evV-LTGR~ap~~L 172 (382)
T PRK07413 120 AIAS-GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEII-ITGRAAPQSL 172 (382)
T ss_pred HHhC-CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE-EeCCCCCHHH
Confidence 3445 4799999995332 245667888888766666665 5565555443
No 370
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=69.25 E-value=35 Score=23.61 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=46.6
Q ss_pred CHHHHHHHHhcCCCcc-EEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe--eCCCCHHH
Q 045936 58 NGKEAVDLFRTGAKFH-IVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY--TKPLTMAK 134 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~d-lil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l--~kP~~~~~ 134 (145)
+..+..+.+.... .+ +-++|....-....+.++.+++. ...||++-.--.+......+.+.|++..+ ..-+..+.
T Consensus 32 ~~~~~A~~~~~~G-A~~l~v~~~~~~~~g~~~~~~~i~~~-v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~ 109 (217)
T cd00331 32 DPVEIAKAYEKAG-AAAISVLTEPKYFQGSLEDLRAVREA-VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQ 109 (217)
T ss_pred CHHHHHHHHHHcC-CCEEEEEeCccccCCCHHHHHHHHHh-cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHH
Confidence 3444444444423 44 44555544444456777777775 36788765434455578889999999986 33333345
Q ss_pred HHHHHH
Q 045936 135 IVPLLE 140 (145)
Q Consensus 135 l~~~l~ 140 (145)
+...++
T Consensus 110 ~~~~~~ 115 (217)
T cd00331 110 LKELYE 115 (217)
T ss_pred HHHHHH
Confidence 544444
No 371
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=69.16 E-value=26 Score=23.99 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=33.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFI 77 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~ 77 (145)
|+|+|+|-..-....+...|++.|+.+..+++.++. . .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~----~---~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVI----L---AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHh----C---CCCEEEE
Confidence 578999977777777888999999998888876543 1 3677774
No 372
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=69.07 E-value=38 Score=24.64 Aligned_cols=75 Identities=12% Similarity=0.040 Sum_probs=40.5
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhcCCeEEEec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCC
Q 045936 27 YFALVVDDDP------MIRRIHSMILKSVGFKVEVAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVE 99 (145)
Q Consensus 27 ~~vlii~~~~------~~~~~l~~~l~~~g~~v~~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~ 99 (145)
|+|+++.... .....+...|...|+.|..+. +.......+.. ..+|+|.+-......-....+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~-~~~diih~~~~~~~~~~~~~~~~~~---~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI-INADIVHLHWIHGGFLSIEDLSKLL---DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc-ccCCEEEEEccccCccCHHHHHHHH---cC
Confidence 3566665442 355667777878898866333 33334444554 5799998754333332333333332 24
Q ss_pred CcEEEE
Q 045936 100 SKIVGV 105 (145)
Q Consensus 100 ~~ii~l 105 (145)
+|+++.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 565544
No 373
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=69.02 E-value=36 Score=25.05 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=48.8
Q ss_pred CHHHHHHHHhcC--CCccEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHH
Q 045936 58 NGKEAVDLFRTG--AKFHIVFIDMEMPVM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAK 134 (145)
Q Consensus 58 ~~~~~l~~l~~~--~~~dlil~d~~~~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 134 (145)
..+++++..+.. -..|++++.....+. .-..+.+.++..+|..|++++...........+.+.|+.-...-+.....
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 466777765431 247999987322222 23345555555556678765543223334677888999887766555544
Q ss_pred HHHHHHHH
Q 045936 135 IVPLLEEL 142 (145)
Q Consensus 135 l~~~l~~~ 142 (145)
....++..
T Consensus 247 a~~a~~~~ 254 (285)
T TIGR02320 247 AYAAMQQV 254 (285)
T ss_pred HHHHHHHH
Confidence 44444443
No 374
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=68.68 E-value=41 Score=24.18 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=46.2
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHH-HhcccEEe
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVM---DGIEATKAMRAMKVESKIVGVTSRNSETEREVFM-QAGLDLCY 126 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~---~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~-~~g~~~~l 126 (145)
+..+....+.....-.+++.|..-.++ .-+++++.+++. ..+|+++-.+-.+.+....++ ..|+++.+
T Consensus 153 ~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 153 DPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 355666666553323477777654332 246677888765 568998888888888888887 78988763
No 375
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=68.62 E-value=38 Score=23.79 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=47.9
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVM---DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~---~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+..+..+.+.... ..+++.|..-.++ ..+++++.+.+. ..+|+++-.+-.+.+....+...|++..+.
T Consensus 142 ~~~~~~~~~~~~g-~~ii~tdI~~dGt~~G~d~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSFD-YGLIVLDIHSVGTMKGPNLELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhcC-CEEEEEECCccccCCCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4445555554422 4688888876543 246788888775 367888777788888888888899998764
No 376
>PLN02366 spermidine synthase
Probab=68.54 E-value=46 Score=24.75 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=43.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc--CC---eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCC-----HHHHHHHHHh
Q 045936 27 YFALVVDDDPMIRRIHSMILKSV--GF---KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMD-----GIEATKAMRA 95 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~--g~---~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~-----g~~~~~~l~~ 95 (145)
.+|.++|-++...+.-+..+... ++ ++. ...|+.+.++.... ..+|+|++|..-|... ..++.+.+++
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~-~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~ 194 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE-GTYDAIIVDSSDPVGPAQELFEKPFFESVAR 194 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC-CCCCEEEEcCCCCCCchhhhhHHHHHHHHHH
Confidence 46888888888777777776432 11 233 45566665554323 4699999998665433 2356777766
Q ss_pred h
Q 045936 96 M 96 (145)
Q Consensus 96 ~ 96 (145)
.
T Consensus 195 ~ 195 (308)
T PLN02366 195 A 195 (308)
T ss_pred h
Confidence 5
No 377
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=68.52 E-value=45 Score=24.65 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=54.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe-EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCH--HHHHHHHHhhCCCCcE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK-VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG--IEATKAMRAMKVESKI 102 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~-v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g--~~~~~~l~~~~~~~~i 102 (145)
.+|.-+|-++...+..+...+.+|.. +. ...+..+..... . ..+|+|++| |...| -++++.|....+ +.
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-~-~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~--~~ 268 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-G-EVPDLVLVN---PPRRGIGKELCDYLSQMAP--RF 268 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-C-CCCeEEEEC---CCCCCccHHHHHHHHHcCC--Ce
Confidence 47999999999888888888777753 33 455665544322 2 359999998 33333 356677766554 34
Q ss_pred EEEecCCChHHHHHHHHh
Q 045936 103 VGVTSRNSETEREVFMQA 120 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~ 120 (145)
|++.+....+...++...
T Consensus 269 ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 269 ILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred EEEEECCcccchhHHhhc
Confidence 555555555555554433
No 378
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=68.32 E-value=27 Score=24.24 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=34.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHhcCCCccEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGF--KVEVAENGKEAVDLFRTGAKFHIVFI 77 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~~~~dlil~ 77 (145)
++|.|+|-.--....+...|++.|+ .+...++.+++ ..+|.+|+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l-------~~~d~lIl 47 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV-------AAADRVVL 47 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh-------cCCCEEEE
Confidence 5889999887778889999999998 67777776663 24888876
No 379
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=68.27 E-value=43 Score=24.32 Aligned_cols=54 Identities=24% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 88 EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 88 ~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
..++.+|+..+....|-++. .+.+....+.+.|+|....-|++++.+...++.+
T Consensus 166 ~av~~~r~~~~~~~~Igvev-~t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEV-ESLEEAEEAAEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45677777655344454544 4556777889999998889999999999887653
No 380
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=68.09 E-value=22 Score=28.63 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=34.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEe
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d 78 (145)
+||++|+....-..+..+|++.|.. +........-+..+.. ..||.||+.
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~-~~~d~vIls 51 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEA-LNPSHIVIS 51 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHh-cCCCEEEEC
Confidence 3899999999999999999999975 5544221111233333 358877765
No 381
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=67.94 E-value=72 Score=26.75 Aligned_cols=89 Identities=11% Similarity=0.092 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEe-CCCCCCC-HHHHHHHHHhhCCC-CcEEEEecCCChH
Q 045936 37 MIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFID-MEMPVMD-GIEATKAMRAMKVE-SKIVGVTSRNSET 112 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d-~~~~~~~-g~~~~~~l~~~~~~-~~ii~lt~~~~~~ 112 (145)
.....+...-+..|.+ ++.+++.+|+-+.+.. ..++|=++ .++.... .++....|...-|. ..+|.-++-..++
T Consensus 147 ~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~--ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~ 224 (695)
T PRK13802 147 AQLKHLLDLAHELGMTVLVETHTREEIERAIAA--GAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFGAV 224 (695)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhC--CCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence 3455666666778987 4599999999888876 36766444 3443321 24455555554443 2233336667788
Q ss_pred HHHHHHHhcccEEee
Q 045936 113 EREVFMQAGLDLCYT 127 (145)
Q Consensus 113 ~~~~~~~~g~~~~l~ 127 (145)
....+...|++++|.
T Consensus 225 d~~~l~~~G~davLI 239 (695)
T PRK13802 225 EVEDYARAGADAVLV 239 (695)
T ss_pred HHHHHHHCCCCEEEE
Confidence 888899999999974
No 382
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=67.59 E-value=47 Score=24.41 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=57.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+++++++.+.. ..++..+ ..+......-+.++....+.. .|++++-.. ..-|..+++.+ ...+|||...
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~---ad~~v~ps~--e~~g~~~~Eam---a~G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR---ARAFLFPAE--EDFGIVPVEAM---ASGTPVIAYG 291 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh---CCEEEECCc--CCCCchHHHHH---HcCCCEEEeC
Confidence 457777776543 2333311 112223333355556666543 577776544 22344444443 3357777653
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
..... .....|..+++..|-+++++...|..+++
T Consensus 292 ~~~~~----e~i~~~~~G~~~~~~~~~~la~~i~~l~~ 325 (351)
T cd03804 292 KGGAL----ETVIDGVTGILFEEQTVESLAAAVERFEK 325 (351)
T ss_pred CCCCc----ceeeCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 33222 23445667888889999999999988764
No 383
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=67.51 E-value=10 Score=26.05 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCCC----CCHHHHHHHHHhh-CCCCcEEEEecCCChH
Q 045936 40 RIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMPV----MDGIEATKAMRAM-KVESKIVGVTSRNSET 112 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~----~~g~~~~~~l~~~-~~~~~ii~lt~~~~~~ 112 (145)
..+.. ++..|+.+. .+......+..+.. -+||.|-+|..+-. .....+++.+... .....-+++.+-.+.+
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~-l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~ 215 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLAS-LPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEGVESEE 215 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHH-HCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEECE-SHH
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhh-cccccceeecccccccchhhHHHHHHHHHHHhhccccccceeecCCHH
Confidence 33443 677898865 45555555666665 46999999976542 2233455544432 2223345677888888
Q ss_pred HHHHHHHhcccEE
Q 045936 113 EREVFMQAGLDLC 125 (145)
Q Consensus 113 ~~~~~~~~g~~~~ 125 (145)
....+.+.|++.+
T Consensus 216 ~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 216 QLELLKELGVDYI 228 (236)
T ss_dssp HHHHHHHTTESEE
T ss_pred HHHHHHHcCCCEE
Confidence 8999999999753
No 384
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=67.08 E-value=27 Score=23.70 Aligned_cols=102 Identities=25% Similarity=0.203 Sum_probs=61.8
Q ss_pred EEEeCCHHHHHHHHHHHHh---cCCeEEEecCHHHH-HHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 30 LVVDDDPMIRRIHSMILKS---VGFKVEVAENGKEA-VDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 30 lii~~~~~~~~~l~~~l~~---~g~~v~~~~~~~~~-l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
||.-|++.....++.++.+ .|..+..+++..+. +..... ..++=++-. ...-.+..+-+.+++......=+++
T Consensus 39 Lv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~--~l~v~fi~~-A~KP~~~~fr~Al~~m~l~~~~vvm 115 (175)
T COG2179 39 LVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAE--KLGVPFIYR-AKKPFGRAFRRALKEMNLPPEEVVM 115 (175)
T ss_pred eecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhh--hcCCceeec-ccCccHHHHHHHHHHcCCChhHEEE
Confidence 4555667777777777754 47777766665553 333332 344444321 1223466777777775443333344
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHH
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAK 134 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 134 (145)
.+..--+....+.++|....+.+|+...+
T Consensus 116 VGDqL~TDVlggnr~G~~tIlV~Pl~~~d 144 (175)
T COG2179 116 VGDQLFTDVLGGNRAGMRTILVEPLVAPD 144 (175)
T ss_pred EcchhhhhhhcccccCcEEEEEEEecccc
Confidence 44455566777889999999999987644
No 385
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.05 E-value=57 Score=25.20 Aligned_cols=96 Identities=10% Similarity=0.078 Sum_probs=45.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecC-HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAEN-GKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~-~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
+..+.+++.++.....+.. ..|+.+...+. ..+.+..+.- ..+|.+++-..-... ...++...+...+...+++
T Consensus 23 g~~v~vid~~~~~~~~~~~---~~~~~~~~gd~~~~~~l~~~~~-~~a~~vi~~~~~~~~-n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 23 NNDVTVIDTDEERLRRLQD---RLDVRTVVGNGSSPDVLREAGA-EDADLLIAVTDSDET-NMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred CCcEEEEECCHHHHHHHHh---hcCEEEEEeCCCCHHHHHHcCC-CcCCEEEEecCChHH-HHHHHHHHHHhcCCCeEEE
Confidence 3456677766655443332 23444443221 1223333222 347777765432222 2334445566556667776
Q ss_pred EecCCChHHHHHH---HHhcccEEe
Q 045936 105 VTSRNSETEREVF---MQAGLDLCY 126 (145)
Q Consensus 105 lt~~~~~~~~~~~---~~~g~~~~l 126 (145)
.+........... ...|++..+
T Consensus 98 ~~~~~~~~~~~~l~~~~~~G~~~vi 122 (453)
T PRK09496 98 RVRNPEYAEYDKLFSKEALGIDLLI 122 (453)
T ss_pred EECCccccchhhhhhhhcCCccEEE
Confidence 6544333122222 457888755
No 386
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=67.00 E-value=56 Score=25.50 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=57.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
...|++++........+...|...||.+. .+.+.+.+...+.. ...|...-+.......+.+....+....+....+
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~-~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~ 156 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGV-FFVDLGLQNVEADVVTAIDILKKLVEAVPKGVVI 156 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcc-cccccccceeeeccccccchhhhhhhhcccccee
Confidence 45799999999999999999999999876 67788888777652 2345666666666667777777777766533333
No 387
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=66.91 E-value=34 Score=22.58 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=44.9
Q ss_pred CCcEEEEEeCCHHH---------HHHHHHHHHhcC-CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHH
Q 045936 25 RPYFALVVDDDPMI---------RRIHSMILKSVG-FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMR 94 (145)
Q Consensus 25 ~~~~vlii~~~~~~---------~~~l~~~l~~~g-~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~ 94 (145)
....|.|++.|... ...+...|...+ +... ..+.+++.+.++.+ .++.+++ +|..-.-++.....
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~-~~~~~ea~~~l~~g-~~~~~iv---IP~~Fs~~l~~~~~ 116 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWH-FVSAKEAEKGLADG-KYYMVIT---IPEDFSENATSLLD 116 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceE-EcCHHHHHHHhHcC-cEEEEEE---ECcchhHHHHhhcc
Confidence 45678888876654 456666665544 4443 34889999999984 5775553 34332223322111
Q ss_pred hhCCCCcEEEEecCCC
Q 045936 95 AMKVESKIVGVTSRNS 110 (145)
Q Consensus 95 ~~~~~~~ii~lt~~~~ 110 (145)
...+...+.+.++...
T Consensus 117 ~~~~~~~i~~~~~~~~ 132 (164)
T TIGR03061 117 DQPKKAQLTYKTNDAN 132 (164)
T ss_pred CCCCccEEEEEECCCc
Confidence 2233445555555543
No 388
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=66.86 E-value=43 Score=23.70 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=40.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe--EE-EecCHHHHHHHHhc---CCCccEEEEeCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK--VE-VAENGKEAVDLFRT---GAKFHIVFIDME 80 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~--v~-~~~~~~~~l~~l~~---~~~~dlil~d~~ 80 (145)
-+|.-+|-++......+..++..|+. +. ...+..+.+..+.. ...||+|++|..
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 37999999999999999999888853 33 45577777666532 136999999965
No 389
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=66.84 E-value=38 Score=24.54 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=45.0
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh------CCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM------KVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~------~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
...+.+++++.+.. ..+|.|.+|-.-+ ..+-.....++.. .+....+++++.-+.+.+......|++.|
T Consensus 190 e~~~~~~~~~~~~~-~~~d~irlDs~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sggi~~~~i~~~~~~gvd~~ 264 (281)
T cd00516 190 EVDTLEEALEAAKA-GGADGIRLDSGSP-EELDPAVLILKARAHLDGKGLPRVKIEASGGLDEENIRAYAETGVDVF 264 (281)
T ss_pred EeCCHHHHHHHHhc-CCCCEEEeCCCCh-HHHHHHHHHHHHHHhhhhcCCCceEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 56778889888876 3499999996433 2222333333322 22334667788888888888888887776
No 390
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.61 E-value=47 Score=24.15 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=44.9
Q ss_pred HHHHhcCCeEEE----ecCHHH---HHHHHhcCCCccEEEEeCC---CCCCC----HHHHHHHHHhhCCCCcEEEEecC-
Q 045936 44 MILKSVGFKVEV----AENGKE---AVDLFRTGAKFHIVFIDME---MPVMD----GIEATKAMRAMKVESKIVGVTSR- 108 (145)
Q Consensus 44 ~~l~~~g~~v~~----~~~~~~---~l~~l~~~~~~dlil~d~~---~~~~~----g~~~~~~l~~~~~~~~ii~lt~~- 108 (145)
..+...|..|.. +.+.++ +.+.+.+.+..+++|+... .++.+ -+..+..+++.. +.||++-++.
T Consensus 128 ~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~-~~pV~~D~sHs 206 (266)
T PRK13398 128 KEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS-HLPIIVDPSHA 206 (266)
T ss_pred HHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc-CCCEEEeCCCc
Confidence 333455544431 224444 4445554446788888762 22333 344555666543 5787763333
Q ss_pred CC-----hHHHHHHHHhcccEEe
Q 045936 109 NS-----ETEREVFMQAGLDLCY 126 (145)
Q Consensus 109 ~~-----~~~~~~~~~~g~~~~l 126 (145)
.. ......+...||++.+
T Consensus 207 ~G~~~~v~~~~~aAva~Ga~Gl~ 229 (266)
T PRK13398 207 TGRRELVIPMAKAAIAAGADGLM 229 (266)
T ss_pred ccchhhHHHHHHHHHHcCCCEEE
Confidence 33 4556677899998643
No 391
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.50 E-value=50 Score=24.33 Aligned_cols=54 Identities=19% Similarity=0.117 Sum_probs=41.1
Q ss_pred HHHHHHHHhhCCC-CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVE-SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~-~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+.++.+|+..+. .+|.+ ...+.+....+++.|+|-.+.-.++++++..+++.+
T Consensus 181 ~~ai~~~r~~~~~~~kIeV--Ev~tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~ 235 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEV--EVDTLDQLEEALELGVDAVLLDNMTPDTLREAVAIV 235 (281)
T ss_pred HHHHHHHHHhCCCCCcEEE--EeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHh
Confidence 4577777777663 44433 334666888899999999999999999999998754
No 392
>PRK15482 transcriptional regulator MurR; Provisional
Probab=66.29 E-value=47 Score=24.04 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=48.7
Q ss_pred EEEEEe--CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEE
Q 045936 28 FALVVD--DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 28 ~vlii~--~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii 103 (145)
+|.+++ ........+...|...|+.+....+..........-.+-|++|+ ...++. +..+.++..++. ++++|
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~-iS~sg~t~~~~~~~~~a~~~--g~~iI 213 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIA-ISYSGSKKEIVLCAEAARKQ--GATVI 213 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEE-EeCCCCCHHHHHHHHHHHHC--CCEEE
Confidence 455555 45556666777777788887765555443333222123465543 223333 345566666554 58999
Q ss_pred EEecCCChHHH
Q 045936 104 GVTSRNSETER 114 (145)
Q Consensus 104 ~lt~~~~~~~~ 114 (145)
.+|+.......
T Consensus 214 ~IT~~~~s~la 224 (285)
T PRK15482 214 AITSLADSPLR 224 (285)
T ss_pred EEeCCCCCchH
Confidence 99987765543
No 393
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=66.13 E-value=50 Score=24.25 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=56.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEE-----EecCHHHHHHHHhcCCCccEEEEeCCC---C------CC----CH-
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVE-----VAENGKEAVDLFRTGAKFHIVFIDMEM---P------VM----DG- 86 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~-----~~~~~~~~l~~l~~~~~~dlil~d~~~---~------~~----~g- 86 (145)
+-+||=+|.++.....=...-++.|..+. .-.-.+....++.. ..||++++--+- - +. +.
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~-~~PDIlViTGHD~~~K~~~d~~dl~~YrnSk 182 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEE-VRPDILVITGHDAYSKNKGNYMDLNAYRHSK 182 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHH-hCCCEEEEeCchhhhcCCCChhhhhhhhhhH
Confidence 34899999999777666666677776544 22334445666666 679977653211 0 11 11
Q ss_pred --HHHHHHHHhhCCCCc-EEEEecCCChHHHHHHHHhccc
Q 045936 87 --IEATKAMRAMKVESK-IVGVTSRNSETEREVFMQAGLD 123 (145)
Q Consensus 87 --~~~~~~l~~~~~~~~-ii~lt~~~~~~~~~~~~~~g~~ 123 (145)
.+.++..|+..|+.- .+++++.+. +.-+..+++||+
T Consensus 183 yFVeaVk~aR~y~~~~D~LVIFAGACQ-S~yEall~AGAN 221 (283)
T TIGR02855 183 YFVETVREARKYVPSLDQLVIFAGACQ-SHFESLIRAGAN 221 (283)
T ss_pred HHHHHHHHHHhcCCCcccEEEEcchhH-HHHHHHHHcCcc
Confidence 234445555444433 455555544 456677889985
No 394
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.64 E-value=49 Score=24.28 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 88 EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 88 ~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
..++..|+..+..+ |-+.. .+.+....+.+.|+|....-+++++.+...++..
T Consensus 178 ~av~~~r~~~~~~~-I~VEv-~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~ 230 (277)
T PRK05742 178 QAVAAAHRIAPGKP-VEVEV-ESLDELRQALAAGADIVMLDELSLDDMREAVRLT 230 (277)
T ss_pred HHHHHHHHhCCCCe-EEEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 34566666554433 33433 4577788899999999988999999999887643
No 395
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=65.58 E-value=58 Score=24.77 Aligned_cols=63 Identities=24% Similarity=0.243 Sum_probs=41.9
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhcCCeEEEec---------CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHH
Q 045936 27 YFALVVDDDPMIR-----RIHSMILKSVGFKVEVAE---------NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKA 92 (145)
Q Consensus 27 ~~vlii~~~~~~~-----~~l~~~l~~~g~~v~~~~---------~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~ 92 (145)
.+++|+-+..... ..+...|+..|+.+..++ +.+++.+.++. ..+|.|| -+.+.+.++..+.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~II---avGGGSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE-FEPDWII---ALGGGSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEE---EeCCccHHHHHHH
Confidence 4788887765433 567788887787665443 35566677776 5689887 3567777777666
Q ss_pred H
Q 045936 93 M 93 (145)
Q Consensus 93 l 93 (145)
+
T Consensus 100 i 100 (375)
T cd08179 100 M 100 (375)
T ss_pred H
Confidence 5
No 396
>PRK11059 regulatory protein CsrD; Provisional
Probab=65.55 E-value=64 Score=26.39 Aligned_cols=93 Identities=11% Similarity=0.134 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCC----CC-CCHHHHHHHHHhh-C-CCCcEEEEec
Q 045936 37 MIRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEM----PV-MDGIEATKAMRAM-K-VESKIVGVTS 107 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~----~~-~~g~~~~~~l~~~-~-~~~~ii~lt~ 107 (145)
.....+...|+..|+.+. .+..+-..+..+.. -++|.|=+|-.. .. .....+++.+-.. + .++. ++..+
T Consensus 533 ~~~~~~l~~L~~~G~~iaiddfG~g~~s~~~L~~-l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~-viAeg 610 (640)
T PRK11059 533 SRLRPVLRMLRGLGCRLAVDQAGLTVVSTSYIKE-LNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQ-VFATG 610 (640)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCcccHHHHHh-CCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCe-EEEEE
Confidence 334555667778898865 45555556677776 579999888532 21 2233344544442 2 2333 44566
Q ss_pred CCChHHHHHHHHhcccE----EeeCCCC
Q 045936 108 RNSETEREVFMQAGLDL----CYTKPLT 131 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~----~l~kP~~ 131 (145)
-.+.+....+.+.|++. |+.||..
T Consensus 611 VEt~~~~~~l~~lGvd~~QG~~~~~P~~ 638 (640)
T PRK11059 611 VESREEWQTLQELGVSGGQGDFFAESQP 638 (640)
T ss_pred eCCHHHHHHHHHhCCCeeecCccCCCcC
Confidence 77788888888999865 4677754
No 397
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.41 E-value=71 Score=26.15 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=42.7
Q ss_pred CccEEEEe-CCCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFID-MEMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d-~~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+-++|+| .++-...+.+ +++.|.+-..++.+|++++ +...+...+..-+.-|-.+|++.+++...+.++.
T Consensus 118 ~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt--e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~ 190 (584)
T PRK14952 118 RYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT--EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARIC 190 (584)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC--ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHH
Confidence 46788887 4555555655 3444443233444454453 3334444555556777778999999988887764
No 398
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=65.39 E-value=50 Score=24.03 Aligned_cols=84 Identities=10% Similarity=0.139 Sum_probs=53.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEEEE
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii~l 105 (145)
.++-+.........+...|...|..+...++.......+..-.+=|++|. +...+. ...+.++..++. +.++|.+
T Consensus 134 ~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~-iS~sG~t~e~i~~a~~ak~~--ga~vIai 210 (281)
T COG1737 134 YFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIA-ISFSGYTREIVEAAELAKER--GAKVIAI 210 (281)
T ss_pred EEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEE-EeCCCCcHHHHHHHHHHHHC--CCcEEEE
Confidence 34445666777788888888999998888777776544444233354443 334333 345566666655 5899999
Q ss_pred ecCCChHHH
Q 045936 106 TSRNSETER 114 (145)
Q Consensus 106 t~~~~~~~~ 114 (145)
|+.......
T Consensus 211 T~~~~spla 219 (281)
T COG1737 211 TDSADSPLA 219 (281)
T ss_pred cCCCCCchh
Confidence 998655444
No 399
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.18 E-value=40 Score=29.17 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=44.9
Q ss_pred CccEEEEe-CCCCCCCHHHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFID-MEMPVMDGIEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d-~~~~~~~g~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+-++|+| .++-.....+.+.+.-+.+| ++.+|+.|.. ...+...+...+.-|-.+|++.+++...|++++
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe--~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC--chhchHHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence 46788888 55555555554333333333 4555554433 333445566677888899999999999888765
No 400
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=65.15 E-value=44 Score=23.24 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=53.9
Q ss_pred HHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHh
Q 045936 44 MILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQA 120 (145)
Q Consensus 44 ~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~ 120 (145)
......|.. +..+.+.+|+.+.... ..|.+-+ .| +.-|.+.++.++...+ .+|++.+.+ -+.+.....+..
T Consensus 98 ~~~~~~~~~~~~G~~t~~E~~~A~~~--Gad~vk~---Fpa~~~G~~~l~~l~~~~~~~ipvvaiGG-I~~~n~~~~~~a 171 (206)
T PRK09140 98 RRAVALGMVVMPGVATPTEAFAALRA--GAQALKL---FPASQLGPAGIKALRAVLPPDVPVFAVGG-VTPENLAPYLAA 171 (206)
T ss_pred HHHHHCCCcEEcccCCHHHHHHHHHc--CCCEEEE---CCCCCCCHHHHHHHHhhcCCCCeEEEECC-CCHHHHHHHHHC
Confidence 334445544 3368888998887765 3687754 23 2347888999988775 688876654 477888899999
Q ss_pred cccEEe
Q 045936 121 GLDLCY 126 (145)
Q Consensus 121 g~~~~l 126 (145)
|++.+-
T Consensus 172 Ga~~va 177 (206)
T PRK09140 172 GAAGFG 177 (206)
T ss_pred CCeEEE
Confidence 998863
No 401
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.13 E-value=42 Score=26.76 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=43.4
Q ss_pred CccEEEEe-CCCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFID-MEMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d-~~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+-++|+| .++-...+.+ +++.+. ..| ..++++........+...+..-+..|-.+|++.+++...++++.
T Consensus 121 ~~KV~IIDEah~Ls~~A~NALLKtLE-EPp-~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNALLKTLE-EPP-AHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred CCEEEEEechhhcCHHHHHHHHHHhh-cCC-CceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence 46788888 3444444554 333332 333 23333322233445556677778889899999999998888765
No 402
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=65.01 E-value=60 Score=24.76 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=52.1
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeC-CCCCCCHHHHHHHHHhhCCCCcEEEE-ecCCChHHHHHHHHhcccEEeeCCCCH
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDM-EMPVMDGIEATKAMRAMKVESKIVGV-TSRNSETEREVFMQAGLDLCYTKPLTM 132 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~-~~~~~~g~~~~~~l~~~~~~~~ii~l-t~~~~~~~~~~~~~~g~~~~l~kP~~~ 132 (145)
...+.++.-.........+.++++. ++.-.+--.++..+... ...++.. .+..+.......++.|+++.+.+|-++
T Consensus 80 ~i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~--~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~ 157 (354)
T PF01959_consen 80 EITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGS--STKIIAVVADAEEARVALEVLEKGVDGVLLDPDDP 157 (354)
T ss_pred EECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCC--CceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCH
Confidence 4445444333333222245444443 33445555677776543 4455544 444455567778999999999999999
Q ss_pred HHHHHHHHHH
Q 045936 133 AKIVPLLEEL 142 (145)
Q Consensus 133 ~~l~~~l~~~ 142 (145)
.++.+....+
T Consensus 158 ~ei~~~~~~~ 167 (354)
T PF01959_consen 158 AEIKALVALL 167 (354)
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 403
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=64.94 E-value=31 Score=21.38 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=48.0
Q ss_pred EEEEEeCC--HHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEE-EEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 28 FALVVDDD--PMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIV-FIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 28 ~vlii~~~--~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dli-l~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
+|+++... ......+...|...|..+....+.+........-.+-|++ +++..=......+.++.+++. .+++++
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~--g~~iv~ 92 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKER--GAKVIA 92 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHc--CCeEEE
Confidence 45555543 3444556777777888777777766655544321233544 444322223345566666554 578999
Q ss_pred EecCCChH
Q 045936 105 VTSRNSET 112 (145)
Q Consensus 105 lt~~~~~~ 112 (145)
+|+..+..
T Consensus 93 iT~~~~~~ 100 (139)
T cd05013 93 ITDSANSP 100 (139)
T ss_pred EcCCCCCh
Confidence 98876643
No 404
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=64.62 E-value=62 Score=24.80 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=62.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe--EEE--ecCHHHHHHHHhcCCCccEEEEeCCCC---CCCH--HHHHHHHHhhC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK--VEV--AENGKEAVDLFRTGAKFHIVFIDMEMP---VMDG--IEATKAMRAMK 97 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~--v~~--~~~~~~~l~~l~~~~~~dlil~d~~~~---~~~g--~~~~~~l~~~~ 97 (145)
.+..++++.+. ...++...+..|.. +.. .-+.++....+.. .|+.++-.... +.+| ..+++.+ .
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~---aDv~v~pS~~~~~g~~Eg~p~~llEAm---a 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD---ADVFLLPSVTGADGDMEGIPVALMEAM---A 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh---CCEEEECCccCCCCCccCccHHHHHHH---h
Confidence 45677776653 45566666666532 332 2244555555543 58777643221 1133 3344443 3
Q ss_pred CCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 98 VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 98 ~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
..+|||...... ..+....|..+++..|-+++++...|.++++
T Consensus 327 ~G~PVI~t~~~g----~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVSTLHSG----IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEeCCCC----chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 356776432222 3345677888999999999999999988764
No 405
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=64.62 E-value=40 Score=22.62 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=43.6
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEec--C-HHHHHHHHhcCCCccEEEEeC-CCCCCCHHHHHHHHHhh-CCCCcEEE
Q 045936 30 LVVDDDPMIRRIHSMILKSVGFKVEVAE--N-GKEAVDLFRTGAKFHIVFIDM-EMPVMDGIEATKAMRAM-KVESKIVG 104 (145)
Q Consensus 30 lii~~~~~~~~~l~~~l~~~g~~v~~~~--~-~~~~l~~l~~~~~~dlil~d~-~~~~~~g~~~~~~l~~~-~~~~~ii~ 104 (145)
||+|........+...+++.|..+.... . ..+... .. ..+|.+++-= .....+-......++.. ....|++-
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~--~~-~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilG 77 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLE--DL-DDYDGIIISGGPGSPYDIEGLIELIREARERKIPILG 77 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHH--HT-TTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhh--hh-cCCCEEEECCcCCccccccccccccccccccceEEEE
Confidence 6889888899999999999997655433 2 222222 22 3578665543 22223223333344442 24778876
Q ss_pred Eec
Q 045936 105 VTS 107 (145)
Q Consensus 105 lt~ 107 (145)
++-
T Consensus 78 IC~ 80 (192)
T PF00117_consen 78 ICL 80 (192)
T ss_dssp ETH
T ss_pred Eee
Confidence 643
No 406
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.61 E-value=40 Score=22.63 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=54.4
Q ss_pred EEEEEeC-CHHHHHHHHHHHHhcC--CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 28 FALVVDD-DPMIRRIHSMILKSVG--FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 28 ~vlii~~-~~~~~~~l~~~l~~~g--~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.|++-++ +....+.++...+++| |.+....+....++...++ -+.+-+.|-+.+--+++..|+..... ..++
T Consensus 34 gil~~~e~De~v~esv~dVv~rwGG~F~v~~~~nw~~~i~~wk~g----G~vvHLTMYG~~i~dv~~ei~~~~k~-~lvv 108 (179)
T COG1303 34 GILLDGEEDEKVVESVEDVVERWGGPFFVKFGVNWRKVIREWKEG----GIVVHLTMYGLNIDDVIDEIRESKKD-VLVV 108 (179)
T ss_pred eEEEcCcccHHHHHHHHHHHHhcCCCEEEEEcccHHHHHHHhhcC----CEEEEEEecCCcchhhhHHHHhcCCc-EEEE
Confidence 4666644 6888899999999987 7777777877777766542 23555667676667788888887544 2344
Q ss_pred EecCCChHH
Q 045936 105 VTSRNSETE 113 (145)
Q Consensus 105 lt~~~~~~~ 113 (145)
+.+..-+..
T Consensus 109 VGaeKVp~e 117 (179)
T COG1303 109 VGAEKVPGE 117 (179)
T ss_pred EccccCCHH
Confidence 444444433
No 407
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.08 E-value=44 Score=26.68 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=42.6
Q ss_pred CccEEEEeC-CCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFIDM-EMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d~-~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+-++|+|- ++-...+.+ +++.|.+-.+++.+|+.+. ........+..-+..|-.+|++.+++...++++.
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt--e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT--EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC--ChHHHHHHHHHhheeeecccccHHHHHHHHHHHH
Confidence 456888884 333333444 4444444334455555553 2233444566666777788999999998887764
No 408
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=64.03 E-value=24 Score=29.44 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=41.8
Q ss_pred CccEEEEeC-CCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 71 KFHIVFIDM-EMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 71 ~~dlil~d~-~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.+.++|+|- ++-.....+ +++.|.+...++.+|+.+... . .....+..-+..|-.+|++.+++...|.++++
T Consensus 119 k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~-~-kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP-H-KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc-c-ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence 467899884 332222333 455555444456666555432 2 22223334455667789999999998887653
No 409
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.78 E-value=43 Score=27.57 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=41.4
Q ss_pred CccEEEEe-CCCCCCCHHHH-HHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFID-MEMPVMDGIEA-TKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d-~~~~~~~g~~~-~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+.++|+| .++-...+++. ++.+.+-..++.+|+.|.. +......+..-+.-|-.+|++.+++...+++++
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd--~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD--PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC--chhhhHHHHHhceeeecCCCCHHHHHHHHHHHH
Confidence 47888888 34434444443 3333322234455555532 223333456666777888999999998887765
No 410
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=63.77 E-value=50 Score=23.84 Aligned_cols=60 Identities=8% Similarity=-0.038 Sum_probs=35.2
Q ss_pred hcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCC
Q 045936 67 RTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKP 129 (145)
Q Consensus 67 ~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP 129 (145)
.. ..||++|+=.-.+..+|..-.+.+-+. .+.|.|+++........ .+++..-.+|+.-+
T Consensus 57 ~~-~~pDf~i~isPN~a~PGP~~ARE~l~~-~~iP~IvI~D~p~~K~~-d~l~~~g~GYIivk 116 (277)
T PRK00994 57 EE-WKPDFVIVISPNPAAPGPKKAREILKA-AGIPCIVIGDAPGKKVK-DAMEEQGLGYIIVK 116 (277)
T ss_pred Hh-hCCCEEEEECCCCCCCCchHHHHHHHh-cCCCEEEEcCCCccchH-HHHHhcCCcEEEEe
Confidence 45 469988876555556665544443322 25688888887666555 45555445554333
No 411
>PRK00955 hypothetical protein; Provisional
Probab=63.58 E-value=78 Score=26.17 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=58.9
Q ss_pred CCHHH-HHHHHHHHHhcCCeEEEecCH----HHHHHHHhcCCCccEEEE------eCCC----------------C----
Q 045936 34 DDPMI-RRIHSMILKSVGFKVEVAENG----KEAVDLFRTGAKFHIVFI------DMEM----------------P---- 82 (145)
Q Consensus 34 ~~~~~-~~~l~~~l~~~g~~v~~~~~~----~~~l~~l~~~~~~dlil~------d~~~----------------~---- 82 (145)
|+|.+ ...+..+|+..||.|....-. .+.+..+ ..|.+.+. |... |
T Consensus 26 dhp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~---g~P~l~~~vs~g~~dsmv~~yt~~~~~r~~d~ytpgg~~ 102 (620)
T PRK00955 26 DHPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKL---GKPRLFFLVSAGNMDSMVNHYTASKKLRSKDAYSPGGKM 102 (620)
T ss_pred cCCccHHHHHHHHHHHCCCEEEEecCCCcCChHHHHhh---CCCcEEEEeccccHHHHHhhcchhhhcccccccCCCCcc
Confidence 44444 466788999999998754422 1222222 35787764 1111 1
Q ss_pred ----CCCHHHHHHHHHhhCCCCcEEEEecCCCh------H-----HHHH-HHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 83 ----VMDGIEATKAMRAMKVESKIVGVTSRNSE------T-----EREV-FMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 83 ----~~~g~~~~~~l~~~~~~~~ii~lt~~~~~------~-----~~~~-~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+...+..++.+|+.+|++|||+=....+- + .... +.+.++ ||+..--....+...++.+.
T Consensus 103 ~~rpdra~i~y~~~ik~~~p~~~IvlGG~eaS~rr~~hyd~w~~~~~~siL~d~~a-D~vv~GeGE~t~~eL~~~L~ 178 (620)
T PRK00955 103 GLRPDRATIVYCNKIKEAYPDVPIIIGGIEASLRRFAHYDYWSDKVRRSILIDSGA-DLLVYGMGEKPIVEIARRLK 178 (620)
T ss_pred CCCcchHHHHHHHHHHHHCCCCcEEeCChhhhccccccchhhhhhhhHHHhhccCC-CEEEECCcHHHHHHHHHHHH
Confidence 11234457888888899987644332221 1 1112 345556 66666777777777666553
No 412
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=63.07 E-value=49 Score=23.09 Aligned_cols=82 Identities=20% Similarity=0.166 Sum_probs=48.3
Q ss_pred HHhcCCe--EEEecCHHHHHHHHhcCCCccEEEEeC-CCCCCCHHHHHHHHHhhC--CC-CcEEEEecCCChHHHHHHHH
Q 045936 46 LKSVGFK--VEVAENGKEAVDLFRTGAKFHIVFIDM-EMPVMDGIEATKAMRAMK--VE-SKIVGVTSRNSETEREVFMQ 119 (145)
Q Consensus 46 l~~~g~~--v~~~~~~~~~l~~l~~~~~~dlil~d~-~~~~~~g~~~~~~l~~~~--~~-~~ii~lt~~~~~~~~~~~~~ 119 (145)
|+..|.. +..+-+.+++......+-.|=-..++- .-.+.+|.++++.+.+.. .+ ..-|+.++..+......+..
T Consensus 97 L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~ 176 (211)
T cd00956 97 LSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAAL 176 (211)
T ss_pred HHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHH
Confidence 3444543 335666777776666542221112221 223568888888776632 12 22345677778888888999
Q ss_pred hcccEEee
Q 045936 120 AGLDLCYT 127 (145)
Q Consensus 120 ~g~~~~l~ 127 (145)
.|++.+-.
T Consensus 177 ~Gad~vTv 184 (211)
T cd00956 177 AGADAITL 184 (211)
T ss_pred cCCCEEEe
Confidence 99988743
No 413
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=63.06 E-value=56 Score=23.72 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCeEEEe-------cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCh
Q 045936 39 RRIHSMILKSVGFKVEVA-------ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSE 111 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v~~~-------~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~ 111 (145)
...++..++..|+.+... .+....+..++. ..+|+|++.. ...+...+++.+++.....+++......+.
T Consensus 152 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~-~~~~~vi~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 228 (334)
T cd06342 152 ADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKA-ANPDAVFFGG--YYPEAGPLVRQMRQLGLKAPFMGGDGLCDP 228 (334)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHh-cCCCEEEEcC--cchhHHHHHHHHHHcCCCCcEEecCccCCH
Confidence 345566677778776522 355566777776 4689988754 344567788888887666665544333343
Q ss_pred HH
Q 045936 112 TE 113 (145)
Q Consensus 112 ~~ 113 (145)
..
T Consensus 229 ~~ 230 (334)
T cd06342 229 EF 230 (334)
T ss_pred HH
Confidence 33
No 414
>PRK10551 phage resistance protein; Provisional
Probab=63.05 E-value=78 Score=25.37 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=63.2
Q ss_pred HHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCC----CCCCC-HHHHHHHHHhhCCCC-cEEEEecCCChHH
Q 045936 42 HSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDME----MPVMD-GIEATKAMRAMKVES-KIVGVTSRNSETE 113 (145)
Q Consensus 42 l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~----~~~~~-g~~~~~~l~~~~~~~-~ii~lt~~~~~~~ 113 (145)
....|+..|+.+. -+.++...+..+.. -++|.+=+|-. +...+ ...+++.+-...... --++..+-.+.+.
T Consensus 402 ~l~~Lr~~G~~ialDDFGtg~ssl~~L~~-l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGVEt~~q 480 (518)
T PRK10551 402 LFAWLHSQGIEIAIDDFGTGHSALIYLER-FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGVETPEQ 480 (518)
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHh-CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeCCcHHH
Confidence 4456788898865 56667777788876 67999988842 22222 223444443322112 2344566677777
Q ss_pred HHHHHHhcccE----EeeCCCCHHHHHHHHH
Q 045936 114 REVFMQAGLDL----CYTKPLTMAKIVPLLE 140 (145)
Q Consensus 114 ~~~~~~~g~~~----~l~kP~~~~~l~~~l~ 140 (145)
...+...|++. |+.||.+.+++...++
T Consensus 481 ~~~L~~~Gv~~~QGy~f~kP~~~~~~~~~l~ 511 (518)
T PRK10551 481 ARWLRERGVNFLQGYWISRPLPLEDFVRWLK 511 (518)
T ss_pred HHHHHHcCCCEEEcCccCCCCCHHHHHHHHh
Confidence 77788888854 4789999999887764
No 415
>PLN02476 O-methyltransferase
Probab=62.94 E-value=58 Score=23.91 Aligned_cols=76 Identities=9% Similarity=0.129 Sum_probs=48.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCe--EE-EecCHHHHHHHHh-c--CCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFK--VE-VAENGKEAVDLFR-T--GAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~--v~-~~~~~~~~l~~l~-~--~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
+|.-+|-++.....-+..++..|+. +. ...+..+.+..+. + ...||+|++|.. ...-.+.++.+...-....
T Consensus 145 ~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~--K~~Y~~y~e~~l~lL~~GG 222 (278)
T PLN02476 145 CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD--KRMYQDYFELLLQLVRVGG 222 (278)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCc
Confidence 5889999999999999999988864 43 4566777666552 1 136999999975 2222344444433322233
Q ss_pred EEEE
Q 045936 102 IVGV 105 (145)
Q Consensus 102 ii~l 105 (145)
+|++
T Consensus 223 vIV~ 226 (278)
T PLN02476 223 VIVM 226 (278)
T ss_pred EEEE
Confidence 4444
No 416
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=62.70 E-value=72 Score=24.91 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCC----CCCHHHHHHHHHhhCCC-CcEEEEecCC
Q 045936 35 DPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP----VMDGIEATKAMRAMKVE-SKIVGVTSRN 109 (145)
Q Consensus 35 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~----~~~g~~~~~~l~~~~~~-~~ii~lt~~~ 109 (145)
|....+.+...|...||.++. .....|++|++.=-= .....+.++.+++..+. ..++++++..
T Consensus 13 N~~ds~~~~~~l~~~G~~~~~------------~~~~ADi~iiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~v~v~GC~ 80 (440)
T PRK14334 13 NEYDTHLVESELVSLGAEIVD------------SVDEADFVLVNTCAVRGKPVEKVRSLLGELRKEKAQRPLVVGMMGCL 80 (440)
T ss_pred cHHHHHHHHHHHHHCcCEECC------------CcccCCEEEEeccceeehHHHHHHHHHHHHHhhCcCCCcEEEEEcch
Confidence 445567788888888887653 113479999886221 22345556666554443 2345565554
Q ss_pred ChHH-HHHHHH-hcccEEeeCCCCHHHHHHHHH
Q 045936 110 SETE-REVFMQ-AGLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 110 ~~~~-~~~~~~-~g~~~~l~kP~~~~~l~~~l~ 140 (145)
.... ...... .+++. +..|-...++...+.
T Consensus 81 a~~~~~~~l~~~~~vd~-v~g~~~~~~~~~~~~ 112 (440)
T PRK14334 81 AQLEEGQQMARKFGVDV-LLGPGALTDIGKALE 112 (440)
T ss_pred hccCChhHHhcCCCCCE-EECCCCHHHHHHHHH
Confidence 3322 222222 35554 446666666665543
No 417
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=62.52 E-value=80 Score=25.36 Aligned_cols=95 Identities=11% Similarity=0.170 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCC----CHHHHH---HHHHhhCCCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM----DGIEAT---KAMRAMKVESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~----~g~~~~---~~l~~~~~~~~ii~lt 106 (145)
-|....+.+...|...||..+. .....|+||++.=.=.. ..+..+ +.+++..|.. +|+++
T Consensus 78 ~N~~Dse~~~~~L~~~Gy~~~~------------~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~~~p~~-~i~v~ 144 (509)
T PRK14327 78 MNEHDTEVMAGIFEALGYEPTD------------DTEDADVILLNTCAIRENAENKVFGEIGHLKHLKRENPDL-LIGVC 144 (509)
T ss_pred ccHHHHHHHHHHHHHCcCEECC------------CcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHhhCCCC-EEEEE
Confidence 4445556677777777776542 11347999988632222 234444 3334444554 44555
Q ss_pred cCCChHHH--HHHH-Hh-cccEEeeCCCCHHHHHHHHHHH
Q 045936 107 SRNSETER--EVFM-QA-GLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 107 ~~~~~~~~--~~~~-~~-g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+....... ...+ .. +++ .+..+-....+...+...
T Consensus 145 GCmaq~~~~~~~~~~~~p~vd-~v~g~~~~~~l~~~l~~~ 183 (509)
T PRK14327 145 GCMSQEESVVNKILKKYQHVD-MIFGTHNIHRLPEILKEA 183 (509)
T ss_pred cchhcCcCchHHHHhcCCCCC-EEECCCCHHHHHHHHHHH
Confidence 54433222 2222 22 344 455677777776666543
No 418
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=62.42 E-value=53 Score=23.26 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=49.2
Q ss_pred HHHhcCCe--EEEecCHHHHHHHHhcCCCccEE--EEe-CCCCCCCHHHHHHHHHhh----CCCCcEEEEecCCChHHHH
Q 045936 45 ILKSVGFK--VEVAENGKEAVDLFRTGAKFHIV--FID-MEMPVMDGIEATKAMRAM----KVESKIVGVTSRNSETERE 115 (145)
Q Consensus 45 ~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dli--l~d-~~~~~~~g~~~~~~l~~~----~~~~~ii~lt~~~~~~~~~ 115 (145)
.|+..|.. ++.+-+..+++.....+- +.| +++ +.-.+.+|.++++.+... ++.+. |+.++..+.....
T Consensus 100 ~L~~~Gi~vn~T~ifs~~Qa~~Aa~aGa--~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tk-ILaAS~r~~~~v~ 176 (222)
T PRK12656 100 TLKAEGYHITATAIYTVFQGLLAIEAGA--DYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSK-ILAASFKNVAQVN 176 (222)
T ss_pred HHHHCCCceEEeeeCCHHHHHHHHHCCC--CEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCE-EEEEecCCHHHHH
Confidence 34455654 345667777777666532 322 222 122356888877776553 33444 4567777888888
Q ss_pred HHHHhcccEEee
Q 045936 116 VFMQAGLDLCYT 127 (145)
Q Consensus 116 ~~~~~g~~~~l~ 127 (145)
++...|++.+-.
T Consensus 177 ~a~~~G~d~vTv 188 (222)
T PRK12656 177 KAFALGAQAVTA 188 (222)
T ss_pred HHHHcCCCEEec
Confidence 999999988643
No 419
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=62.38 E-value=60 Score=23.90 Aligned_cols=76 Identities=8% Similarity=-0.018 Sum_probs=48.4
Q ss_pred EEEEEe-CCHH---HHHHHHHHHHh--cCCeEEE-------e-cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHH
Q 045936 28 FALVVD-DDPM---IRRIHSMILKS--VGFKVEV-------A-ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAM 93 (145)
Q Consensus 28 ~vlii~-~~~~---~~~~l~~~l~~--~g~~v~~-------~-~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l 93 (145)
++.++. |+.. ..+.++..+++ .|..++. . .+....+..++. ..+|+|++...- .++..+++.+
T Consensus 145 ~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~-~~~d~v~~~~~~--~~~~~~~~~~ 221 (342)
T cd06329 145 KVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKA-SGADTVITGNWG--NDLLLLVKQA 221 (342)
T ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHH-cCCCEEEEcccC--chHHHHHHHH
Confidence 455554 3332 34556777777 7776541 1 455666777776 569999886532 3677889999
Q ss_pred HhhCCCCcEEEEe
Q 045936 94 RAMKVESKIVGVT 106 (145)
Q Consensus 94 ~~~~~~~~ii~lt 106 (145)
++...+.+++..+
T Consensus 222 ~~~g~~~~~~~~~ 234 (342)
T cd06329 222 ADAGLKLPFYTPY 234 (342)
T ss_pred HHcCCCceEEecc
Confidence 8887766665443
No 420
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.27 E-value=48 Score=27.70 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=43.1
Q ss_pred CccEEEEe-CCCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 71 KFHIVFID-MEMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 71 ~~dlil~d-~~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.+.++|+| .++-...+.+ +++.+.+...++.+|+.+. .. ......+...+.-|-.+|++.+++...++++++
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt-d~-~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~ 191 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT-DP-QKLPITVISRCLQFTLRPLAVDEITKHLGAILE 191 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC-Ch-HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHH
Confidence 46788888 4444444554 4444443333455555553 22 223334445667777899999999999887653
No 421
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=62.14 E-value=68 Score=24.40 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=47.8
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPV-------MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~-------~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
.+++.+++...... .+|.|.+.--.+. .-|++.++.+.+.. .+|++.+.+- +.+....++..|++++
T Consensus 246 S~Hs~~e~~~A~~~--GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~-~iPv~AiGGI-~~~ni~~l~~~Ga~gV 319 (347)
T PRK02615 246 STTNPEEMAKAIAE--GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA-PIPWFAIGGI-DKSNIPEVLQAGAKRV 319 (347)
T ss_pred ecCCHHHHHHHHHc--CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCcEE
Confidence 67788888777665 4898877543332 23678888887644 4888877554 5677788889999886
No 422
>PRK07413 hypothetical protein; Validated
Probab=62.09 E-value=44 Score=25.76 Aligned_cols=45 Identities=7% Similarity=0.155 Sum_probs=28.6
Q ss_pred CCccEEEEeCCC-----CCCCHHHHHHHHHhhCCCCcEEEEecCC-C-hHHHH
Q 045936 70 AKFHIVFIDMEM-----PVMDGIEATKAMRAMKVESKIVGVTSRN-S-ETERE 115 (145)
Q Consensus 70 ~~~dlil~d~~~-----~~~~g~~~~~~l~~~~~~~~ii~lt~~~-~-~~~~~ 115 (145)
..+|++++|=-. .=.+--+++..|++.++.+-+| +|++. . ++..+
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV-LTGR~~ap~~lie 355 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVI-ITGRCKNQPAYFD 355 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEE-EeCCCCCCHHHHH
Confidence 479999999433 2235567888888766666555 66664 4 44443
No 423
>PRK04457 spermidine synthase; Provisional
Probab=61.80 E-value=58 Score=23.49 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=47.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcC--CeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCC-C----CHHHHHHHHHhh-
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVG--FKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPV-M----DGIEATKAMRAM- 96 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g--~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~-~----~g~~~~~~l~~~- 96 (145)
..+|..+|-++......+..+...+ -++. ...|+.+.+.... ..+|+|++|..-.. . ...++++..++.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~--~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L 167 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR--HSTDVILVDGFDGEGIIDALCTQPFFDDCRNAL 167 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC--CCCCEEEEeCCCCCCCccccCcHHHHHHHHHhc
Confidence 4579999999999988888775332 2332 4567777666432 46999999963322 1 235677777664
Q ss_pred CCCCcE
Q 045936 97 KVESKI 102 (145)
Q Consensus 97 ~~~~~i 102 (145)
.|+..+
T Consensus 168 ~pgGvl 173 (262)
T PRK04457 168 SSDGIF 173 (262)
T ss_pred CCCcEE
Confidence 444433
No 424
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=61.75 E-value=23 Score=21.22 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=22.0
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCC
Q 045936 27 YFALVVDDDPM---IRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP 82 (145)
Q Consensus 27 ~~vlii~~~~~---~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~ 82 (145)
.++..+|..+. ....+++.--...+++ ...+..+.+..+.. .++|++++|....
T Consensus 24 ~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~l~~~~~-~~~dli~iDg~H~ 80 (106)
T PF13578_consen 24 GKLYSVDPFPGDEQAQEIIKKAGLSDRVEF-IQGDSPDFLPSLPD-GPIDLIFIDGDHS 80 (106)
T ss_dssp ---EEEESS------------GGG-BTEEE-EES-THHHHHHHHH---EEEEEEES---
T ss_pred CCEEEEECCCcccccchhhhhcCCCCeEEE-EEcCcHHHHHHcCC-CCEEEEEECCCCC
Confidence 46888888883 3334333111112333 34455666666664 5799999997544
No 425
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=61.64 E-value=46 Score=24.27 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE------eeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC------YTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~------l~kP~~~~~l~~~l~~~ 142 (145)
++.++.+++.. .+||+....-.+.+...+++..||+.+ +.-|.-+.++..-+.+.
T Consensus 220 ~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~ 280 (296)
T cd04740 220 LRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAY 280 (296)
T ss_pred HHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHH
Confidence 46777777654 689998888889999999999999875 23355455555544443
No 426
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=61.46 E-value=42 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEe
Q 045936 38 IRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d 78 (145)
....+...|++.|+.+......++.+..+.. ..+|+|+.-
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~-~~~D~v~~~ 63 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKE-LGFDRVFNA 63 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhcc-CCCCEEEEe
Confidence 4467788888899998877666677777765 569988864
No 427
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=61.34 E-value=56 Score=23.22 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=42.8
Q ss_pred EEEEEeC-CHHHHHHHHHHHHhcCCeEE---EecCHHHHHHHHhcC-CCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 28 FALVVDD-DPMIRRIHSMILKSVGFKVE---VAENGKEAVDLFRTG-AKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 28 ~vlii~~-~~~~~~~l~~~l~~~g~~v~---~~~~~~~~l~~l~~~-~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
+|=.+.+ .......+..-|.+.||.+. .+++...+.+.+++. -.|-+++-|--+++.+| |.+..|++-|
T Consensus 41 kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~g------idTs~pn~VV 114 (262)
T KOG3040|consen 41 KVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDG------IDTSDPNCVV 114 (262)
T ss_pred eEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCC------ccCCCCCeEE
Confidence 4544443 44566777888888898875 566777777777652 24556665554444444 2334455544
Q ss_pred EEEe
Q 045936 103 VGVT 106 (145)
Q Consensus 103 i~lt 106 (145)
|-++
T Consensus 115 igla 118 (262)
T KOG3040|consen 115 IGLA 118 (262)
T ss_pred EecC
Confidence 4443
No 428
>PRK08508 biotin synthase; Provisional
Probab=61.34 E-value=61 Score=23.60 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.++++.+++..|.+.+....+..+.+......++|++.|-
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEc
Confidence 4566677776666665555666677777778888887765
No 429
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=61.32 E-value=63 Score=23.76 Aligned_cols=84 Identities=7% Similarity=-0.015 Sum_probs=48.7
Q ss_pred EEEEEe--CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEE
Q 045936 28 FALVVD--DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 28 ~vlii~--~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii 103 (145)
+|.+++ ........+...|...|..+....+..........-.+-|++|+ ....+. +..+.++..+++ ++++|
T Consensus 44 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~-iS~sG~t~~~~~~~~~ak~~--g~~vI 120 (321)
T PRK11543 44 KVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLF-ISYSGGAKELDLIIPRLEDK--SIALL 120 (321)
T ss_pred cEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEE-EeCCCCcHHHHHHHHHHHHc--CCeEE
Confidence 455555 44455566777777889887766654333222222134576665 333333 345566666555 68999
Q ss_pred EEecCCChHHH
Q 045936 104 GVTSRNSETER 114 (145)
Q Consensus 104 ~lt~~~~~~~~ 114 (145)
.+|+..+....
T Consensus 121 ~iT~~~~s~la 131 (321)
T PRK11543 121 AMTGKPTSPLG 131 (321)
T ss_pred EEECCCCChhH
Confidence 99997765433
No 430
>PLN02591 tryptophan synthase
Probab=61.26 E-value=59 Score=23.43 Aligned_cols=99 Identities=8% Similarity=-0.036 Sum_probs=62.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEE-Ee--cCHHHHHHHHhcCCCccEE-EEeC-CCCC------CCHHHHHHHHHhh
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVE-VA--ENGKEAVDLFRTGAKFHIV-FIDM-EMPV------MDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~-~~--~~~~~~l~~l~~~~~~dli-l~d~-~~~~------~~g~~~~~~l~~~ 96 (145)
-+++.|-.......+...++..|.... .+ ++.++-++.+.. .....| ++.. ...+ .+..++++.+|+.
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~-~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~ 187 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAE-ASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV 187 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-hCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc
Confidence 367777777777888888888896633 33 233444444443 223332 3331 1111 1234567778774
Q ss_pred CCCCcEEEEecCCChHHHHHHHHhcccEEeeC
Q 045936 97 KVESKIVGVTSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~k 128 (145)
.+.|+++=.+-.+++....+...|+|+.+.-
T Consensus 188 -~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 188 -TDKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred -CCCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 5788887666777888999999999998754
No 431
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=60.95 E-value=56 Score=23.07 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=49.8
Q ss_pred HHHhcCCe--EEEecCHHHHHHHHhcCCCccEE--EEeC-CCCCCCHHHHHHHHHhh----CCCCcEEEEecCCChHHHH
Q 045936 45 ILKSVGFK--VEVAENGKEAVDLFRTGAKFHIV--FIDM-EMPVMDGIEATKAMRAM----KVESKIVGVTSRNSETERE 115 (145)
Q Consensus 45 ~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dli--l~d~-~~~~~~g~~~~~~l~~~----~~~~~ii~lt~~~~~~~~~ 115 (145)
.|+..|.. ++.+-+..+++.....+ .+.| +++- .-.+.+|+.+++.+++. .+.+. |+.++-.+.....
T Consensus 98 ~L~~~GI~vn~T~vfs~~Qa~~Aa~aG--a~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~~tk-ILaAS~r~~~~v~ 174 (220)
T PRK12653 98 MLKAEGIPTLGTAVYGAAQGLLSALAG--AEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAPQAK-VLAASFKTPRQAL 174 (220)
T ss_pred HHHHcCCCeeEEEecCHHHHHHHHhcC--CcEEEeecChHhhcCCChHHHHHHHHHHHHhcCCCcE-EEEEecCCHHHHH
Confidence 45666755 34566777777666653 3332 3321 22466888888877763 23344 4466666777777
Q ss_pred HHHHhcccEEee
Q 045936 116 VFMQAGLDLCYT 127 (145)
Q Consensus 116 ~~~~~g~~~~l~ 127 (145)
.+...|++.+-.
T Consensus 175 ~~~~~G~d~vTi 186 (220)
T PRK12653 175 DCLLAGCESITL 186 (220)
T ss_pred HHHHcCCCEEEC
Confidence 888899988643
No 432
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=60.80 E-value=62 Score=23.49 Aligned_cols=84 Identities=13% Similarity=0.081 Sum_probs=47.9
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEE
Q 045936 28 FALVVDD--DPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 28 ~vlii~~--~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii 103 (145)
+|.+++- .......+...|...|..+....+..........-.+-|++|+ ....+. +..++++..++. ++++|
T Consensus 142 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~-iS~sG~t~~~~~~~~~ak~~--g~~ii 218 (292)
T PRK11337 142 QRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLV-VSHSGRTSDVIEAVELAKKN--GAKII 218 (292)
T ss_pred eEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEE-EeCCCCCHHHHHHHHHHHHC--CCeEE
Confidence 4555554 4444455666666778887767666554333222134566554 333333 344555555554 68999
Q ss_pred EEecCCChHHH
Q 045936 104 GVTSRNSETER 114 (145)
Q Consensus 104 ~lt~~~~~~~~ 114 (145)
.+|+..+....
T Consensus 219 ~IT~~~~s~la 229 (292)
T PRK11337 219 CITNSYHSPIA 229 (292)
T ss_pred EEeCCCCChhH
Confidence 99998766544
No 433
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=60.71 E-value=64 Score=23.65 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=52.6
Q ss_pred EEEeCCHHH---HHHHHHHHHhcCCeEEE-------ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCC
Q 045936 30 LVVDDDPMI---RRIHSMILKSVGFKVEV-------AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVE 99 (145)
Q Consensus 30 lii~~~~~~---~~~l~~~l~~~g~~v~~-------~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~ 99 (145)
++..+++.- ...++..++..|..+.. ..+....+..+.. ..+|+|++-. ...+...+++.++....+
T Consensus 140 ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~-~~~d~v~~~~--~~~~~~~~~~~~~~~g~~ 216 (340)
T cd06349 140 ILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRD-ANPDAIILIS--YYNDGAPIARQARAVGLD 216 (340)
T ss_pred EEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHh-cCCCEEEEcc--ccchHHHHHHHHHHcCCC
Confidence 444454432 35566677777876552 2356677777766 5699998754 344567788888888777
Q ss_pred CcEEEEecCCChHHHH
Q 045936 100 SKIVGVTSRNSETERE 115 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~ 115 (145)
.+++..+...++....
T Consensus 217 ~~~~~~~~~~~~~~~~ 232 (340)
T cd06349 217 IPVVASSSVYSPKFIE 232 (340)
T ss_pred CcEEccCCcCCHHHHH
Confidence 7776655544554444
No 434
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=60.54 E-value=81 Score=24.79 Aligned_cols=97 Identities=9% Similarity=0.090 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC----HHH---HHHHHHhhCCCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD----GIE---ATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~----g~~---~~~~l~~~~~~~~ii~lt 106 (145)
-|....+.+...|...||..+. + ....|+++++.---..+ ... .++.+++..|.. +++++
T Consensus 22 ~N~~dse~~~~~l~~~G~~~~~--~----------~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~-~ivv~ 88 (449)
T PRK14332 22 MNEYDSGIVSSLMRDAEYSTSN--D----------PENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKKRNPNL-VIGVL 88 (449)
T ss_pred CCHHHHHHHHHHHHHCcCEECC--C----------cccCCEEEEEccCeechHHHHHHHHHHHHHHHHHhCCCC-EEEEE
Confidence 4555667788889888987642 1 13589999986433222 222 233445555655 34565
Q ss_pred cCCChHHHHHHH-HhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 107 SRNSETEREVFM-QAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 107 ~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+..........+ ....-+++..+-....+...+....
T Consensus 89 GC~a~~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~ 126 (449)
T PRK14332 89 GCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIR 126 (449)
T ss_pred CcccccchHHHhhccCCceEEECCCCHHHHHHHHHHHh
Confidence 555444444443 2222567777888888877776543
No 435
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=60.46 E-value=81 Score=24.73 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=43.3
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhcCCeEEEe---cCHH----HHHHHHhcCCCccEEEEeCCCC---CCCHHHHHHH
Q 045936 26 PYFALVVDDDPMI---RRIHSMILKSVGFKVEVA---ENGK----EAVDLFRTGAKFHIVFIDMEMP---VMDGIEATKA 92 (145)
Q Consensus 26 ~~~vlii~~~~~~---~~~l~~~l~~~g~~v~~~---~~~~----~~l~~l~~~~~~dlil~d~~~~---~~~g~~~~~~ 92 (145)
+.+|++++-|... ...+..+....|..+... .+.. ++++.+.. ..+|+||+|..=- +...+.-+..
T Consensus 128 g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~-~~~DvVIIDTaGr~~~d~~l~~eL~~ 206 (428)
T TIGR00959 128 GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE-NGFDVVIVDTAGRLQIDEELMEELAA 206 (428)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCCCccccCHHHHHHHHH
Confidence 4578888887432 233444444556554433 2332 34444444 4699999997421 1123333334
Q ss_pred HHh-hCCCCcEEEEecCCChH
Q 045936 93 MRA-MKVESKIVGVTSRNSET 112 (145)
Q Consensus 93 l~~-~~~~~~ii~lt~~~~~~ 112 (145)
+.. ..|+-.++++.+....+
T Consensus 207 i~~~~~p~e~lLVvda~tgq~ 227 (428)
T TIGR00959 207 IKEILNPDEILLVVDAMTGQD 227 (428)
T ss_pred HHHhhCCceEEEEEeccchHH
Confidence 433 23554556665544333
No 436
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=60.28 E-value=60 Score=23.19 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=50.7
Q ss_pred ecCHHHHHHHHhcCCCccEEEEeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 56 AENGKEAVDLFRTGAKFHIVFIDMEMPVM---DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 56 ~~~~~~~l~~l~~~~~~dlil~d~~~~~~---~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
..+..+..+.+.....-.+.++|+.-... .-+++++.+++.. .+|+++-.+-.+.+....++..|++..+.
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~viv 102 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSI 102 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 34777877777663333488888875532 2455677776653 57888888888999999999999988753
No 437
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=60.19 E-value=41 Score=24.58 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEEe-------eCCCCHHHHHHHHHH
Q 045936 86 GIEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLCY-------TKPLTMAKIVPLLEE 141 (145)
Q Consensus 86 g~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~l-------~kP~~~~~l~~~l~~ 141 (145)
.+..++.+++..+ .++|+.+.+-.+.+...+.+.+||+.+- .-|.-..++.+-|++
T Consensus 230 aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~~ 293 (295)
T PF01180_consen 230 ALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRELEE 293 (295)
T ss_dssp HHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHHHh
Confidence 3567777777654 7999999999999999999999999862 235555555555544
No 438
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=60.01 E-value=83 Score=24.74 Aligned_cols=86 Identities=9% Similarity=0.071 Sum_probs=40.7
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhcCCeEEEe---cCHHHHH-HHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh----
Q 045936 27 YFALVVDDDPMI---RRIHSMILKSVGFKVEVA---ENGKEAV-DLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA---- 95 (145)
Q Consensus 27 ~~vlii~~~~~~---~~~l~~~l~~~g~~v~~~---~~~~~~l-~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~---- 95 (145)
.+|++++.|... ...+..+....|..+... .+..+.+ +.+......|+||+|.-=-.....++++.++.
T Consensus 124 ~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~ 203 (437)
T PRK00771 124 LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHALEEDLIEEMKEIKEA 203 (437)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCcccchHHHHHHHHHHHHH
Confidence 478888876532 233444555556555432 2322211 22221123599999975211212233333333
Q ss_pred hCCCCcEEEEecCCChH
Q 045936 96 MKVESKIVGVTSRNSET 112 (145)
Q Consensus 96 ~~~~~~ii~lt~~~~~~ 112 (145)
..|+..++++.+....+
T Consensus 204 ~~pdevlLVvda~~gq~ 220 (437)
T PRK00771 204 VKPDEVLLVIDATIGQQ 220 (437)
T ss_pred hcccceeEEEeccccHH
Confidence 24555566665544433
No 439
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.75 E-value=83 Score=24.65 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=55.7
Q ss_pred cEEEEEeCC---HHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 27 YFALVVDDD---PMIRRIHSMILKSVGF--KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 27 ~~vlii~~~---~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
.+++++++. +...+.++...++.|. .|.... .++....+. ..|++++-.... .-+..+++.+. ..+|
T Consensus 325 ~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~---~aDv~vlpS~~E-g~p~~vlEAma---~G~P 396 (475)
T cd03813 325 AEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP---KLDVLVLTSISE-GQPLVILEAMA---AGIP 396 (475)
T ss_pred eEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH---hCCEEEeCchhh-cCChHHHHHHH---cCCC
Confidence 355555543 2344455555555553 232222 233333332 357777654322 22344444443 3566
Q ss_pred EEEEecCCChHHHHHHHHh------cccEEeeCCCCHHHHHHHHHHHhh
Q 045936 102 IVGVTSRNSETEREVFMQA------GLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~------g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+|. |.... ....... |..+++..|-+++++...+.++++
T Consensus 397 VVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 397 VVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred EEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 654 33222 2233333 678899999999999999988764
No 440
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=59.61 E-value=85 Score=24.71 Aligned_cols=92 Identities=9% Similarity=0.098 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCC----CCCHHHH---HHHHHhhCCCCcEEEEe
Q 045936 34 DDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP----VMDGIEA---TKAMRAMKVESKIVGVT 106 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~----~~~g~~~---~~~l~~~~~~~~ii~lt 106 (145)
-|....+.+...|...||.++. .....|+++++.=-= .....+. ++.+++..|..+| +++
T Consensus 32 ~N~~dse~~~~~l~~~G~~~~~------------~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~i-vv~ 98 (459)
T PRK14338 32 MNVSDSERLEAALQGVGYSPAE------------RPEDADFIVLNSCSVRASAEERILGKLGELQRLKRQRPDTRI-VLW 98 (459)
T ss_pred CCHHHHHHHHHHHHHCcCEECC------------CcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHhhCCCCEE-EEe
Confidence 4556667888889888987653 113579999885221 1223333 4444555565554 455
Q ss_pred cCCChHHHHHH--HHh-cccEEeeCCCCHHHHHHHH
Q 045936 107 SRNSETEREVF--MQA-GLDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 107 ~~~~~~~~~~~--~~~-g~~~~l~kP~~~~~l~~~l 139 (145)
+.......... ... +++ ++..|-....+...+
T Consensus 99 GC~a~~~~~~~~~~~~p~vd-~v~g~~~~~~i~~~~ 133 (459)
T PRK14338 99 GCMVGPNNQSIFAERLPMVD-HFVSPSAVDEVVALA 133 (459)
T ss_pred CCccccChhHhhHhcCCCCc-EEECCccHHHHHHHH
Confidence 54444333333 233 444 455676666666554
No 441
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=59.38 E-value=70 Score=23.63 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=55.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEE--Eec---CHHHHHHHHhcCCCccEEEEeCCCC---------CC----CH--
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVE--VAE---NGKEAVDLFRTGAKFHIVFIDMEMP---------VM----DG-- 86 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~--~~~---~~~~~l~~l~~~~~~dlil~d~~~~---------~~----~g-- 86 (145)
-+||=+|.++.....=...-++.|..+. .++ -++...+++.. ..||++++--+-. +. +.
T Consensus 106 GkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~-~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 184 (287)
T PF05582_consen 106 GKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEE-YRPDILVITGHDGYLKNKKDYSDLNNYRNSKY 184 (287)
T ss_pred CeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHH-cCCCEEEEeCchhhhcCCCChhhhhhhhccHH
Confidence 3899999999777666666677786655 222 22224455555 6799776532111 11 11
Q ss_pred -HHHHHHHHhhCCCCc-EEEEecCCChHHHHHHHHhccc
Q 045936 87 -IEATKAMRAMKVESK-IVGVTSRNSETEREVFMQAGLD 123 (145)
Q Consensus 87 -~~~~~~l~~~~~~~~-ii~lt~~~~~~~~~~~~~~g~~ 123 (145)
.+.++..|+..|+.- .+++++.+. +.-+..+++||+
T Consensus 185 FVeaV~~aR~~ep~~D~LVIfAGACQ-S~fEall~AGAN 222 (287)
T PF05582_consen 185 FVEAVKEARKYEPNLDDLVIFAGACQ-SHFEALLEAGAN 222 (287)
T ss_pred HHHHHHHHHhcCCCcccEEEEcchhH-HHHHHHHHcCcc
Confidence 344555555545443 445555444 456678889985
No 442
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=59.24 E-value=66 Score=23.31 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=37.4
Q ss_pred HHHHHHhcCCeEEEecC-------HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCC
Q 045936 42 HSMILKSVGFKVEVAEN-------GKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 42 l~~~l~~~g~~v~~~~~-------~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
+.+.++..||.+...++ .++..+.++. ..||++++|.- ..+. +..+.++.. ..+++++.+..
T Consensus 45 ~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~vV~D~y--~~~~-~~~~~~k~~--~~~l~~iDD~~ 113 (279)
T TIGR03590 45 LIDLLLSAGFPVYELPDESSRYDDALELINLLEE-EKFDILIVDHY--GLDA-DWEKLIKEF--GRKILVIDDLA 113 (279)
T ss_pred HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHh-cCCCEEEEcCC--CCCH-HHHHHHHHh--CCeEEEEecCC
Confidence 34567788988775543 4456677776 57999999974 2222 234455543 33556665543
No 443
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=59.01 E-value=45 Score=22.73 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCChHHHHH-HHHhcccEEeeCCCCHHHH
Q 045936 86 GIEATKAMRAMKVESKIVGVTSRNSETEREV-FMQAGLDLCYTKPLTMAKI 135 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~-~~~~g~~~~l~kP~~~~~l 135 (145)
...+++.+++.+|+.+|++.+.......... .+..++. +..-|++..-.
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~-~~~~P~D~~~~ 86 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVD-VQYLPLDFPWA 86 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-S-EEE---SSHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeE-EEEeCccCHHH
Confidence 4567788888888888887766444433322 2223333 34457765443
No 444
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=58.95 E-value=72 Score=23.79 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=51.4
Q ss_pred EEEeCCHHHHHHHHHHHHh--cCCeEEEecCH--HHHHHH-----------Hhc----CCCccEEEEeCCC---CCC---
Q 045936 30 LVVDDDPMIRRIHSMILKS--VGFKVEVAENG--KEAVDL-----------FRT----GAKFHIVFIDMEM---PVM--- 84 (145)
Q Consensus 30 lii~~~~~~~~~l~~~l~~--~g~~v~~~~~~--~~~l~~-----------l~~----~~~~dlil~d~~~---~~~--- 84 (145)
-.-|+...+|..++..++. .|+..+..... -.++.. +.. ...+.+|++|++- .+.
T Consensus 65 ~~~D~m~~~R~~~k~~~k~~~lGh~~vl~~~~~~y~~L~EW~v~~~~~v~~l~~~~~~~~~~kvIvFDLDgTLi~~~~~v 144 (301)
T TIGR01684 65 SCADDMVDLRAHLKTAFKTSYFGHTFVLFHKPAMYACLNEWYVFELEEIYNLNLPSKVFEPPHVVVFDLDSTLITDEEPV 144 (301)
T ss_pred EcCCcHHHHHHHHHHHhcccccceEEEecCCccHHHHHHHHHcccHhhhhhccccccccccceEEEEecCCCCcCCCCcc
Confidence 3445566777777777753 46554432211 111111 110 2357899988743 111
Q ss_pred ----C-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 85 ----D-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 85 ----~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+ ..++++.+++. ++++.+.|+.............|.+.|+
T Consensus 145 ~irdPgV~EaL~~Lkek--GikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 145 RIRDPRIYDSLTELKKR--GCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ccCCHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 2 23566666665 4677777776655555555667877654
No 445
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=58.88 E-value=99 Score=25.25 Aligned_cols=100 Identities=13% Similarity=0.214 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCeEE--EecCHHHHHHHHhc--CCCccEEEEeCCCC---CCCHHHHHHHHHhhC--CCCcEEEEecC
Q 045936 38 IRRIHSMILKSVGFKVE--VAENGKEAVDLFRT--GAKFHIVFIDMEMP---VMDGIEATKAMRAMK--VESKIVGVTSR 108 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~--~~~~dlil~d~~~~---~~~g~~~~~~l~~~~--~~~~ii~lt~~ 108 (145)
....+...|+..|+.+. .+..+-..+..+.. .-++|.|=+|-.+- ..+ ..+.+.+.... .++. ++..+-
T Consensus 540 ~~~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~-~~~~~~i~~~a~~l~~~-viaegV 617 (660)
T PRK11829 540 EALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPED-DAIARIISCVSDVLKVR-VMAEGV 617 (660)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCC-HHHHHHHHHHHHHcCCe-EEEecC
Confidence 34455666778898865 46666667777654 03689998884321 112 12333333321 2333 445677
Q ss_pred CChHHHHHHHHhcccE----EeeCCCCHHHHHHHH
Q 045936 109 NSETEREVFMQAGLDL----CYTKPLTMAKIVPLL 139 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~----~l~kP~~~~~l~~~l 139 (145)
.+.+....+.+.|++. |+.||.+.+++...+
T Consensus 618 Et~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 618 ETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred CCHHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 7777888888999865 588999999987655
No 446
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=58.25 E-value=73 Score=23.54 Aligned_cols=68 Identities=9% Similarity=0.027 Sum_probs=48.4
Q ss_pred ecCHHHHHHHHhcCCCccEEEEeC--C---CCC---CCHHHHHHHHHhhCCCCcEEEEec-CCChHHHHHHHHhcccEE
Q 045936 56 AENGKEAVDLFRTGAKFHIVFIDM--E---MPV---MDGIEATKAMRAMKVESKIVGVTS-RNSETEREVFMQAGLDLC 125 (145)
Q Consensus 56 ~~~~~~~l~~l~~~~~~dlil~d~--~---~~~---~~g~~~~~~l~~~~~~~~ii~lt~-~~~~~~~~~~~~~g~~~~ 125 (145)
.++.+++.+..+. .+|.+-+.. - .++ .=+++.++.+++.-+++|+++..+ ....+....+...|+..+
T Consensus 153 ~t~peea~~f~~t--gvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~Ki 229 (293)
T PRK07315 153 LAPIEDAKAMVET--GIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKV 229 (293)
T ss_pred CCCHHHHHHHHHc--CCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 4789999998854 489877772 2 222 236889999988765688876644 356667888889998765
No 447
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=58.03 E-value=72 Score=23.41 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCeEEE-------ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 38 IRRIHSMILKSVGFKVEV-------AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v~~-------~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
....++..++..|+.++. ..+....+..++. ..+|+|++... ..+...+++.+++.....+++
T Consensus 153 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~-~~~d~vi~~~~--~~~~~~~~~~~~~~g~~~~~~ 222 (344)
T cd06348 153 ETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLN-SKPDLIVISAL--AADGGNLVRQLRELGYNGLIV 222 (344)
T ss_pred HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh-cCCCEEEECCc--chhHHHHHHHHHHcCCCCcee
Confidence 445677777778877652 2355667777766 56999887653 345667888888876666654
No 448
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=57.90 E-value=23 Score=25.66 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 87 IEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 87 ~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
++.++.+++..+ ++||+....-.+.+...+++..||+.+
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 556777777655 789999999889999999999998875
No 449
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=57.82 E-value=33 Score=22.90 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=38.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV 83 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~ 83 (145)
.+.+|+++......-.-+..+|...|..|..+++...-++..-. ..|+|+.-.--++
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~--~ADIVVsa~G~~~ 91 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR--RADIVVSAVGKPN 91 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT--TSSEEEE-SSSTT
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee--eccEEeeeecccc
Confidence 46689999999999999999999999888877654433333332 4799998765444
No 450
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=57.78 E-value=82 Score=23.97 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=40.9
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhcCCeEEEecC---------HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHH
Q 045936 27 YFALVVDDDPMI----RRIHSMILKSVGFKVEVAEN---------GKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAM 93 (145)
Q Consensus 27 ~~vlii~~~~~~----~~~l~~~l~~~g~~v~~~~~---------~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l 93 (145)
.+++|+.+.... ...+...|+..|..+..++. .+++.+.++. ..+|+|| -..+.+.++..+.+
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~II---avGGGS~iD~aK~i 104 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKK-EGCDFII---SIGGGSPHDCAKAI 104 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEE---EeCCcHHHHHHHHH
Confidence 378888775442 34677788777766655432 4456666665 4689887 24577777776655
Q ss_pred H
Q 045936 94 R 94 (145)
Q Consensus 94 ~ 94 (145)
.
T Consensus 105 a 105 (377)
T cd08176 105 G 105 (377)
T ss_pred H
Confidence 3
No 451
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=57.67 E-value=54 Score=21.79 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=29.9
Q ss_pred CHHHHHHHHhc--CCCccEEEEeCCCCCC-----------CHHHHHHHHHhhCCCCcEEEEec
Q 045936 58 NGKEAVDLFRT--GAKFHIVFIDMEMPVM-----------DGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 58 ~~~~~l~~l~~--~~~~dlil~d~~~~~~-----------~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
+..+.+..+.. ..+||+|++-+-..+. +-.++++.+++..+.++|++++.
T Consensus 52 t~~~~~~~l~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~ 114 (191)
T cd01836 52 TSADLLRQLAPLPETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAV 114 (191)
T ss_pred CHHHHHHHHHhcccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 44555665542 2479999884332221 12346667776668888888764
No 452
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=57.46 E-value=64 Score=22.64 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=50.8
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPV-------MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~-------~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
++++.+++.+..+. . +|-|.+.--.|. -.|++.++++++..+ +|++.+.+ -+.+......+.|+++.
T Consensus 110 S~h~~eea~~A~~~-g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~-iP~vAIGG-i~~~nv~~v~~~Ga~gV 183 (211)
T COG0352 110 STHDLEEALEAEEL-G-ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN-IPVVAIGG-INLENVPEVLEAGADGV 183 (211)
T ss_pred ecCCHHHHHHHHhc-C-CCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCC-CCEEEEcC-CCHHHHHHHHHhCCCeE
Confidence 67788998888765 3 898887764443 348888888887654 78777654 57778889999999886
No 453
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=57.43 E-value=74 Score=23.93 Aligned_cols=47 Identities=11% Similarity=0.197 Sum_probs=33.6
Q ss_pred ecCHHHHHHHHhc--CCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 56 AENGKEAVDLFRT--GAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 56 ~~~~~~~l~~l~~--~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
..+..+|++.+.. .+..|++++- |++.-+++++.+++.+ ..|+.++-
T Consensus 224 p~n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~-~~PvaaYq 272 (323)
T PRK09283 224 PANRREALREVALDIEEGADMVMVK---PALPYLDIIRRVKDEF-NLPVAAYQ 272 (323)
T ss_pred CCCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHhcC-CCCEEEEE
Confidence 4466677765542 1347999987 6777889999999887 48887663
No 454
>PLN02823 spermine synthase
Probab=57.41 E-value=82 Score=23.81 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=43.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-----CeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCC-------CHHHHHH-H
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG-----FKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVM-------DGIEATK-A 92 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g-----~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~-------~g~~~~~-~ 92 (145)
.+|.++|-++...+..+..+...+ -++. ...|+...++.. ...+|+|++|..-|.. -..++.+ .
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~ 205 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVIIGDLADPVEGGPCYQLYTKSFYERI 205 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEEEecCCCccccCcchhhccHHHHHHH
Confidence 478999999999998888875321 1232 466777666542 2469999999754321 1345665 5
Q ss_pred HHhh
Q 045936 93 MRAM 96 (145)
Q Consensus 93 l~~~ 96 (145)
+++.
T Consensus 206 ~~~~ 209 (336)
T PLN02823 206 VKPK 209 (336)
T ss_pred HHHh
Confidence 5554
No 455
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=57.39 E-value=52 Score=22.03 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=38.4
Q ss_pred CccEEEEeCCCCCCC--HH-HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 71 KFHIVFIDMEMPVMD--GI-EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 71 ~~dlil~d~~~~~~~--g~-~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
.+-++++|- ....+ .. .+++.+....+.+.+|+++.. ......++..-+.-+-.+|++.+++...+++
T Consensus 96 ~~kviiide-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~--~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 96 GRRVVIIED-AERMNEAAANALLKTLEEPPPNTLFILITPS--PEKLLPTIRSRCQVLPFPPLSEEALLQWLIR 166 (188)
T ss_pred CeEEEEEec-hhhhCHHHHHHHHHHhcCCCCCeEEEEEECC--hHhChHHHHhhcEEeeCCCCCHHHHHHHHHH
Confidence 356888873 22222 22 355555443334445555542 2344455555566777789899998877754
No 456
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=57.36 E-value=11 Score=25.60 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=39.6
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+.+.+++.++. ..||.|=+ ||+ -...+++++++.. .+|+|.=.--.+.+....++.+||.+.=+
T Consensus 105 al~~~~~~i~~-~~PD~vEi---lPg-~~p~vi~~i~~~~-~~PiIAGGLI~~~e~v~~al~aGa~aVST 168 (175)
T PF04309_consen 105 ALETGIKQIEQ-SKPDAVEI---LPG-VMPKVIKKIREET-NIPIIAGGLIRTKEDVEEALKAGADAVST 168 (175)
T ss_dssp HHHHHHHHHHH-HT-SEEEE---ESC-CHHHHHCCCCCCC-SS-EEEESS--SHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHhh-cCCCEEEE---chH-HHHHHHHHHHHhc-CCCEEeecccCCHHHHHHHHHcCCEEEEc
Confidence 33445666665 56887753 566 4445666665543 57777655567888899999999988643
No 457
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.29 E-value=64 Score=22.60 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=49.7
Q ss_pred HHhcCCeEE-EecCHHHHHHHHhcCCCccEE-EEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcc
Q 045936 46 LKSVGFKVE-VAENGKEAVDLFRTGAKFHIV-FIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGL 122 (145)
Q Consensus 46 l~~~g~~v~-~~~~~~~~l~~l~~~~~~dli-l~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~ 122 (145)
..+.+..+. -+.+..|+....+. . .+++ +.+...- .|...++.|+.-.|+.+++ .++.-+.+.....+.+|+
T Consensus 104 a~~~~i~~iPG~~TptEi~~a~~~-G-a~~vKlFPa~~~--gg~~~lk~l~~p~p~~~~~-ptGGV~~~ni~~~l~ag~ 177 (212)
T PRK05718 104 AQEGPIPLIPGVSTPSELMLGMEL-G-LRTFKFFPAEAS--GGVKMLKALAGPFPDVRFC-PTGGISPANYRDYLALPN 177 (212)
T ss_pred HHHcCCCEeCCCCCHHHHHHHHHC-C-CCEEEEccchhc--cCHHHHHHHhccCCCCeEE-EeCCCCHHHHHHHHhCCC
Confidence 344666666 56788887777665 3 5655 4332211 2688899999888888887 666777788889999884
No 458
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=57.08 E-value=64 Score=22.47 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=51.6
Q ss_pred HHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHHHhhCCCCcEEEEecCCChHH
Q 045936 42 HSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPV-------MDGIEATKAMRAMKVESKIVGVTSRNSETE 113 (145)
Q Consensus 42 l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~-------~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~ 113 (145)
+...++..+..+. .+.+.+++...... .+|.++++..-.+ ...+++++.+++.. ..|+++..+-...+.
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~ 170 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEAA--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGRG 170 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHHc--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEECCCCCHHH
Confidence 3444444554443 45566666554443 4788777542111 13566777777643 578887777666688
Q ss_pred HHHHHHhcccEEee
Q 045936 114 REVFMQAGLDLCYT 127 (145)
Q Consensus 114 ~~~~~~~g~~~~l~ 127 (145)
...++..|++++..
T Consensus 171 v~~~l~~GadgV~v 184 (236)
T cd04730 171 IAAALALGADGVQM 184 (236)
T ss_pred HHHHHHcCCcEEEE
Confidence 88888999998753
No 459
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=56.87 E-value=76 Score=23.31 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=50.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHH----HHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKE----AVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKVE 99 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~----~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~~ 99 (145)
.+-+++++|....+..+..+--...+....-++.++ .+..+..+ .-=.++-|..+|.. +|+.+++..++.+
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g-~~valVSDAG~P~ISDPG~~LV~~a~~~g-- 106 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKG-KSVALVSDAGTPLISDPGYELVRAAREAG-- 106 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcC-CeEEEEecCCCCcccCccHHHHHHHHHcC--
Confidence 456899999988877655543222211112234444 34444543 23466778999975 5999999988764
Q ss_pred CcEEEEecCCC
Q 045936 100 SKIVGVTSRNS 110 (145)
Q Consensus 100 ~~ii~lt~~~~ 110 (145)
++|..+.+.+.
T Consensus 107 i~V~~lPG~sA 117 (275)
T COG0313 107 IRVVPLPGPSA 117 (275)
T ss_pred CcEEecCCccH
Confidence 67777766544
No 460
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=56.84 E-value=59 Score=26.99 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=44.5
Q ss_pred CccEEEEe-CCCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFID-MEMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d-~~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+-++|+| .++-...+.+ +++.|.+-..++.+|+.|.. ...+...+..-+.-|-.+|++.+++...|++++
T Consensus 119 ~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~--~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred CCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC--ccccchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 46788888 4444444555 44444433335555555443 333444555567888889999999999888765
No 461
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.78 E-value=12 Score=24.10 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=24.0
Q ss_pred CCccEEEEeCCCCCC----C------H-HHHHHHHHhhCCCCcEEEEec
Q 045936 70 AKFHIVFIDMEMPVM----D------G-IEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 70 ~~~dlil~d~~~~~~----~------g-~~~~~~l~~~~~~~~ii~lt~ 107 (145)
..||+|++-+-..+. + . -.+++.+++..|.+++++++.
T Consensus 39 ~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 87 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVATL 87 (157)
T ss_pred CCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 468999985433321 1 1 246777777778888776653
No 462
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=56.58 E-value=84 Score=23.72 Aligned_cols=89 Identities=11% Similarity=0.146 Sum_probs=57.4
Q ss_pred hcCCeE--EEecCHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHh
Q 045936 48 SVGFKV--EVAENGKEAVDLFRTGAKFHIVFIDMEMP-----VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQA 120 (145)
Q Consensus 48 ~~g~~v--~~~~~~~~~l~~l~~~~~~dlil~d~~~~-----~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ 120 (145)
..||.+ ++..|...+-+...- .+ +.++-+-.+ +....+.++.+.+. +.+|+++=++-..++....+++.
T Consensus 195 ~~Gf~v~~yc~~d~~~a~~l~~~-g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~Amel 270 (326)
T PRK11840 195 KEGFQVMVYCSDDPIAAKRLEDA-GA--VAVMPLGAPIGSGLGIQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMEL 270 (326)
T ss_pred HCCCEEEEEeCCCHHHHHHHHhc-CC--EEEeeccccccCCCCCCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHc
Confidence 348886 366677777665554 33 444432222 12234566666665 56888888888899999999999
Q ss_pred cccEEe-----eCCCCHHHHHHHHH
Q 045936 121 GLDLCY-----TKPLTMAKIVPLLE 140 (145)
Q Consensus 121 g~~~~l-----~kP~~~~~l~~~l~ 140 (145)
|+++.+ .|--++-.+.++.+
T Consensus 271 GadgVL~nSaIa~a~dPv~Ma~A~~ 295 (326)
T PRK11840 271 GCDGVLMNTAIAEAKNPVLMARAMK 295 (326)
T ss_pred CCCEEEEcceeccCCCHHHHHHHHH
Confidence 999985 45555555555443
No 463
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=56.53 E-value=85 Score=23.73 Aligned_cols=82 Identities=13% Similarity=0.019 Sum_probs=56.4
Q ss_pred HHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCC-CCCCC--------HHHHHHHHHhhCCCCcEEEEecCCCh
Q 045936 42 HSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDME-MPVMD--------GIEATKAMRAMKVESKIVGVTSRNSE 111 (145)
Q Consensus 42 l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~-~~~~~--------g~~~~~~l~~~~~~~~ii~lt~~~~~ 111 (145)
....++..|..+. .+.+.+++.+..+. ..|.++..-. -.+.. .+.++..+++....+|+|.-..-.+.
T Consensus 119 ~i~~~~~~g~~v~~~v~~~~~A~~~~~~--G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg 196 (336)
T COG2070 119 FVARLKAAGIKVIHSVITVREALKAERA--GADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADG 196 (336)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHHHhC--CCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccCh
Confidence 3344444564433 67788888777654 4677776543 33332 36777888776544899988888899
Q ss_pred HHHHHHHHhcccEE
Q 045936 112 TEREVFMQAGLDLC 125 (145)
Q Consensus 112 ~~~~~~~~~g~~~~ 125 (145)
..+..++..||++.
T Consensus 197 ~~i~AAlalGA~gV 210 (336)
T COG2070 197 RGIAAALALGADGV 210 (336)
T ss_pred HHHHHHHHhccHHH
Confidence 99999999999874
No 464
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=56.01 E-value=62 Score=23.40 Aligned_cols=63 Identities=5% Similarity=-0.059 Sum_probs=35.2
Q ss_pred HhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCC
Q 045936 66 FRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131 (145)
Q Consensus 66 l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~ 131 (145)
+.. ..||++|+-.-.+...|..-.+.+-+. .+.|.|+++....... ..+++..-.+|+.-+.+
T Consensus 55 ~~~-~~pdf~I~isPN~~~PGP~~ARE~l~~-~~iP~IvI~D~p~~k~-kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 55 LKE-WDPDFVIVISPNAAAPGPTKAREMLSA-KGIPCIVISDAPTKKA-KDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHH-H--SEEEEE-S-TTSHHHHHHHHHHHH-SSS-EEEEEEGGGGGG-HHHHHHTT-EEEEETTS
T ss_pred HHh-hCCCEEEEECCCCCCCCcHHHHHHHHh-CCCCEEEEcCCCchhh-HHHHHhcCCcEEEEecC
Confidence 344 368988877666677777655555432 3678888888665554 45565555666544444
No 465
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=55.82 E-value=50 Score=23.19 Aligned_cols=64 Identities=9% Similarity=0.209 Sum_probs=43.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCe-EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFK-VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA 95 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~-v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~ 95 (145)
+|.-+|..+...+.-+..|+..||. |. ...|+...+. ...+||.|++....+..+- .++++|+.
T Consensus 96 ~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~---~~aPyD~I~Vtaaa~~vP~-~Ll~QL~~ 161 (209)
T COG2518 96 RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP---EEAPYDRIIVTAAAPEVPE-ALLDQLKP 161 (209)
T ss_pred eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC---CCCCcCEEEEeeccCCCCH-HHHHhccc
Confidence 6888888888888888889888873 33 4445444332 2258999999887766653 34444443
No 466
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=55.53 E-value=59 Score=21.61 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 86 GIEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 86 g~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..+.++.+++..+ ..++++.+.....+....++..|++++.
T Consensus 158 ~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~ 199 (201)
T cd00945 158 TVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIG 199 (201)
T ss_pred CHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceee
Confidence 4555666665543 5678777776667788888888988765
No 467
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=55.29 E-value=96 Score=23.99 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=38.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCe---EE-EecCHHHHHHHHh-cCCCccEEEEeC
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFK---VE-VAENGKEAVDLFR-TGAKFHIVFIDM 79 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~---v~-~~~~~~~~l~~l~-~~~~~dlil~d~ 79 (145)
+|.-+|-++......+..+..+|+. +. ...|..+.+..+. .+..+|+|++|-
T Consensus 245 ~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 7999999999999999999888763 33 4557777665443 224699999984
No 468
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=55.12 E-value=73 Score=22.53 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=49.0
Q ss_pred HHHhcCCe--EEEecCHHHHHHHHhcCCCccEEEEe-CCCCCCCHHHHHHHHHhh----CCCCcEEEEecCCChHHHHHH
Q 045936 45 ILKSVGFK--VEVAENGKEAVDLFRTGAKFHIVFID-MEMPVMDGIEATKAMRAM----KVESKIVGVTSRNSETEREVF 117 (145)
Q Consensus 45 ~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dlil~d-~~~~~~~g~~~~~~l~~~----~~~~~ii~lt~~~~~~~~~~~ 117 (145)
.|+..|.. ++.+-+..+++.....+-.+=-.+++ +.-.+.+|..+++.+.+. .+.+.| +.++-.+......+
T Consensus 98 ~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkI-LaAS~r~~~~v~~~ 176 (220)
T PRK12655 98 KLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPESMV-LAASFKTPRQALDC 176 (220)
T ss_pred HHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCCCcEE-EEEecCCHHHHHHH
Confidence 45666755 34566777776666553222122222 122466898888887763 234444 45666677777778
Q ss_pred HHhcccEEe
Q 045936 118 MQAGLDLCY 126 (145)
Q Consensus 118 ~~~g~~~~l 126 (145)
...|++.+-
T Consensus 177 ~~~G~d~vT 185 (220)
T PRK12655 177 LLAGCQSIT 185 (220)
T ss_pred HHcCCCEEE
Confidence 889998864
No 469
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=54.99 E-value=80 Score=22.96 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=52.1
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe-----eC---
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY-----TK--- 128 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l-----~k--- 128 (145)
+.++..+.......+|.+++.-.-. ....++.++.+++..+..|+ ++++..+++....++.. +++++ -+
T Consensus 158 ~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pv-llggGvt~eNv~e~l~~-adGviVgS~~K~~G~ 235 (257)
T TIGR00259 158 DLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPV-LAGSGVNLENVEELLSI-ADGVIVATTIKKDGV 235 (257)
T ss_pred CHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeE-EEECCCCHHHHHHHHhh-CCEEEECCCcccCCc
Confidence 5555444332223589777664333 33457778888775666775 57777888888888775 55543 12
Q ss_pred ---CCCHHHHHHHHHHH
Q 045936 129 ---PLTMAKIVPLLEEL 142 (145)
Q Consensus 129 ---P~~~~~l~~~l~~~ 142 (145)
|.+++.+.+.++.+
T Consensus 236 ~~n~~D~~rV~~Fm~~v 252 (257)
T TIGR00259 236 FNNFVDQARVSQFVEKV 252 (257)
T ss_pred cCCCcCHHHHHHHHHHH
Confidence 67888887777654
No 470
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=54.88 E-value=86 Score=25.64 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=49.3
Q ss_pred CccEEEEeCCCC--CCCHHHHHHHHHhhCCCCcEEEEecCC-ChHH----HHHHHHhcccEEeeCCCCHHHHHHHHH
Q 045936 71 KFHIVFIDMEMP--VMDGIEATKAMRAMKVESKIVGVTSRN-SETE----REVFMQAGLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 71 ~~dlil~d~~~~--~~~g~~~~~~l~~~~~~~~ii~lt~~~-~~~~----~~~~~~~g~~~~l~kP~~~~~l~~~l~ 140 (145)
+++.+++|-.|= +..|-.++++.|..+..+.-+++++.- +-+. +..+...|......||=+.+.+...|+
T Consensus 93 qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~ 169 (717)
T COG4981 93 QFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIR 169 (717)
T ss_pred eeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHH
Confidence 578999985552 456778999999987666656666544 3222 333344477777899999999998875
No 471
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.82 E-value=74 Score=22.56 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=43.9
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCC-CH--HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVM-DG--IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~-~g--~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+..+.+..+.....-.+++.|..-.++ .| +++++.+++. +. ++++-..-.+.+....+...|+++.+.
T Consensus 147 ~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~-~~-~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 147 EVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI-RG-LKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC-CC-CEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 455666666653233789999877654 34 5677777664 33 455544455667777788889998653
No 472
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=54.65 E-value=1e+02 Score=24.00 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=47.6
Q ss_pred HHHHHHHHHHH-hcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCC----CCCHHHHHHHHHh-hCCCCcEEEEecCCC
Q 045936 37 MIRRIHSMILK-SVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP----VMDGIEATKAMRA-MKVESKIVGVTSRNS 110 (145)
Q Consensus 37 ~~~~~l~~~l~-~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~----~~~g~~~~~~l~~-~~~~~~ii~lt~~~~ 110 (145)
...+.+...|. ..||.++.. ....|++|++.=-= .....+.++.+++ ..+. +.|++++...
T Consensus 4 ~dse~~~~~l~~~~G~~~~~~------------~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~-~~ivv~GC~a 70 (420)
T PRK14339 4 RDSEHMIAELSQKEDYKLTQD------------IKEADLILINTCSVREKPVHKLFSEIGQFNKIKKEG-AKIGVCGCTA 70 (420)
T ss_pred HHHHHHHHHHhhcCCcEECCC------------cccCCEEEEeccCccchHHHHHHHHHHHHHHhhCCC-CeEEEECCcc
Confidence 34566777777 468876531 13479999775221 2234555556654 3333 3466666533
Q ss_pred hHHHHHHH-Hh-cccEEeeCCCCHHHHHHHHH
Q 045936 111 ETEREVFM-QA-GLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 111 ~~~~~~~~-~~-g~~~~l~kP~~~~~l~~~l~ 140 (145)
........ .. +++ ++..|-....+...+.
T Consensus 71 ~~~~~~~~~~~~~vd-~v~g~~~~~~i~~~~~ 101 (420)
T PRK14339 71 SHLGEEIIKRAPYVD-FVLGARNVSKISQVIH 101 (420)
T ss_pred ccCCHHHHhhCCCCc-EEECCCCHHHHHHHHH
Confidence 33323332 23 344 4556766666665554
No 473
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=54.53 E-value=58 Score=24.99 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCccEE-EEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCC
Q 045936 60 KEAVDLFRTGAKFHIV-FIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 60 ~~~l~~l~~~~~~dli-l~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
.+..+.+.+ ..||++ ++|. |+.+ +.+.+.+|+.++..|++.+.++.
T Consensus 72 ~~~~~~~~~-~~pd~vIlID~--pgFN-lrlak~lk~~~~~~~viyYI~Pq 118 (373)
T PF02684_consen 72 RKLVERIKE-EKPDVVILIDY--PGFN-LRLAKKLKKRGIPIKVIYYISPQ 118 (373)
T ss_pred HHHHHHHHH-cCCCEEEEeCC--CCcc-HHHHHHHHHhCCCceEEEEECCc
Confidence 444555555 579955 5553 4443 56889999988877788776665
No 474
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=54.48 E-value=44 Score=22.78 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=32.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEE
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFI 77 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~ 77 (145)
|+|+|-.......+...|++.|+.+..+++.++ + ..+|.|++
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l---~~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----I---LSADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----h---ccCCEEEE
Confidence 578888888888999999999998887776543 2 24788877
No 475
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=54.22 E-value=60 Score=24.00 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCeEEE---ec------C--------HHHHHHHHhcCCCccEEEEeCCC----CCC-C-HHHHHHHHHh
Q 045936 39 RRIHSMILKSVGFKVEV---AE------N--------GKEAVDLFRTGAKFHIVFIDMEM----PVM-D-GIEATKAMRA 95 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v~~---~~------~--------~~~~l~~l~~~~~~dlil~d~~~----~~~-~-g~~~~~~l~~ 95 (145)
...+...+++.|++++. +. - ..+.++.++...++|.|+++++= .+. + ..++++.+|+
T Consensus 47 ~~g~~~~a~~~g~e~vp~~~a~A~P~G~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~EG~Ll~rvR~ 126 (292)
T PF07364_consen 47 IGGFLDAAEAQGWEVVPLLWAAAEPGGPVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGEGDLLRRVRA 126 (292)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEEE-SEE-B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCEEEeeEeeeecCCCcccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCchHHHHHHHHH
Confidence 34566667788887652 11 1 12334455554579999999742 111 2 3479999999
Q ss_pred h-CCCCcEEEEecCCC
Q 045936 96 M-KVESKIVGVTSRNS 110 (145)
Q Consensus 96 ~-~~~~~ii~lt~~~~ 110 (145)
. +|++||.+.-....
T Consensus 127 ~vGp~vpI~~tlDlHa 142 (292)
T PF07364_consen 127 IVGPDVPIAATLDLHA 142 (292)
T ss_dssp HHTTTSEEEEEE-TT-
T ss_pred HhCCCCeEEEEeCCCC
Confidence 4 78899876655443
No 476
>COG4378 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.12 E-value=47 Score=20.07 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=38.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKIV 103 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~ii 103 (145)
|.||+++.+.. ..+...|.+.||. +.+++--+.-.....-....|+|++=.+.-+. ++.+.|+... ..+|+.
T Consensus 1 MSvlviGaD~l--g~I~~kL~e~GfskIeHvtgRk~~~~kk~Ips~~dlilvLtdf~nH---Nl~~~iK~eakk~~ip~~ 75 (103)
T COG4378 1 MSVLVIGADEL--GPIRAKLHELGFSKIEHVTGRKNRVNKKPIPSDTDLILVLTDFLNH---NLMKKIKNEAKKRKIPLV 75 (103)
T ss_pred CeEEEEccccc--ccHHHHHHhcChhheEEeeccccccccccCCCCccEEEEEhhhhcc---hHHHHHHHHHhhcCCCeE
Confidence 45888888754 6688889999986 55544322221111111235777664443333 3455555533 345543
No 477
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=54.07 E-value=97 Score=23.66 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=39.3
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhcCCeEEEec---------CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHH
Q 045936 27 YFALVVDDDPMI----RRIHSMILKSVGFKVEVAE---------NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAM 93 (145)
Q Consensus 27 ~~vlii~~~~~~----~~~l~~~l~~~g~~v~~~~---------~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l 93 (145)
.+++|+-|.... .+.+...|++.|..+..+. +.+++.+.++. ..+|+|| -..+.+.++..+.+
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~II---aiGGGS~iD~aK~i 106 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKA-SGADYLI---AIGGGSPQDTCKAI 106 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEE---EeCChHHHHHHHHH
Confidence 478888775432 3456777877776655442 33456666666 4689877 24566777766644
No 478
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=54.02 E-value=85 Score=23.59 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=33.1
Q ss_pred cCHHHHHHHHhcC--CCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 57 ENGKEAVDLFRTG--AKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 57 ~~~~~~l~~l~~~--~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
.+..+|++..... ...|++++- |...-+++++.+++.+ +.|+.++--
T Consensus 222 ~n~~eAlre~~~Di~EGAD~lMVK---Pal~YLDIi~~~k~~~-~lPvaaYqV 270 (320)
T cd04823 222 ANSREALREVALDIAEGADMVMVK---PGMPYLDIIRRVKDEF-GVPTFAYQV 270 (320)
T ss_pred CCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhc-CCCEEEEEc
Confidence 3566676655431 247999986 6777889999999877 588876633
No 479
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.01 E-value=95 Score=23.53 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=40.8
Q ss_pred CccEEEEeC-CCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFIDM-EMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d~-~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+.++|+|- +.-...+.+ +++.+....+.+.+|++++. .......+..-+..|-.+|++.+++...+++.+
T Consensus 119 ~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~--~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD--VEKIPKTILSRCLQFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred CceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC--hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHH
Confidence 356888883 222222333 44555443334445555432 333444555556677788999999998887654
No 480
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=53.86 E-value=68 Score=21.80 Aligned_cols=54 Identities=28% Similarity=0.321 Sum_probs=31.5
Q ss_pred CHHHHHHHHHhhCCCCcE-EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHH
Q 045936 85 DGIEATKAMRAMKVESKI-VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 85 ~g~~~~~~l~~~~~~~~i-i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l 139 (145)
.+.+.++.+++. +..++ +.+...........+.+.|++.........++....+
T Consensus 43 ~~~~~v~~i~~~-~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKY-TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhc-CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 467778888764 34554 3244444555677777888888665544444443333
No 481
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=53.85 E-value=21 Score=20.68 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=26.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecC
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAEN 58 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~ 58 (145)
-+++++.|.....+..++.+.||.+...+-
T Consensus 6 si~v~n~pGVL~Ri~~lf~rRgfNI~Sl~v 35 (76)
T PRK06737 6 SLVIHNDPSVLLRISGIFARRGYYISSLNL 35 (76)
T ss_pred EEEEecCCCHHHHHHHHHhccCcceEEEEe
Confidence 578999999999999999999999886553
No 482
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=53.82 E-value=49 Score=22.61 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=32.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEE
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFI 77 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~ 77 (145)
|+|+|........+...|+..|+.+....+.++ + ..+|.+++
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~----l---~~~d~lii 42 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKE----A---ELADKLIL 42 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHH----h---ccCCEEEE
Confidence 578888888999999999999988877776543 1 24787776
No 483
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=53.72 E-value=66 Score=21.61 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-CHHHHHHHHhcCCCccEEEEeCCCCC
Q 045936 24 NRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-NGKEAVDLFRTGAKFHIVFIDMEMPV 83 (145)
Q Consensus 24 ~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~~~~~l~~l~~~~~~dlil~d~~~~~ 83 (145)
..+.+|+|++........+...|...|..++.++ +.++..+.+. ..|+||.-..-+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~---~aDiVIsat~~~~ 99 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTK---QADIVIVAVGKPG 99 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHh---hCCEEEEcCCCCc
Confidence 3566899999988778878888888887765444 4444544443 3799998776554
No 484
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=53.70 E-value=1.1e+02 Score=24.27 Aligned_cols=67 Identities=12% Similarity=-0.039 Sum_probs=41.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+..|.+.+.++...+.+.......|+.+..+.+.++++..+. .+|+|++-. .++...-+++..+...
T Consensus 24 G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~---~~d~Iil~v-~~~~~v~~vi~~l~~~ 90 (470)
T PTZ00142 24 GFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLK---KPRKVILLI-KAGEAVDETIDNLLPL 90 (470)
T ss_pred CCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCC---CCCEEEEEe-CChHHHHHHHHHHHhh
Confidence 457889999888877776654444665556778888876553 368666532 1222233455555543
No 485
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=53.43 E-value=65 Score=21.47 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=38.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~ 79 (145)
.+.+|.++.+.. ....+...... +..+..+.+.+++++.+.. +..|.++.+.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~-g~~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLS-GRIDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHT-TSSSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhc-CCeeeeeccc
Confidence 445788888754 44445554433 6677789999999999998 5799999874
No 486
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=53.30 E-value=84 Score=22.74 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCccEEEEe-C--CCCC----CCHHHHHHHHHhhCCCCcEEE-EecCCCh-----HHHHHHHHhcccEEe
Q 045936 61 EAVDLFRTGAKFHIVFID-M--EMPV----MDGIEATKAMRAMKVESKIVG-VTSRNSE-----TEREVFMQAGLDLCY 126 (145)
Q Consensus 61 ~~l~~l~~~~~~dlil~d-~--~~~~----~~g~~~~~~l~~~~~~~~ii~-lt~~~~~-----~~~~~~~~~g~~~~l 126 (145)
.+++.+......+++|+. - ..+. .--+..+..+++.+ ++||++ .|..... .....|...||++.+
T Consensus 140 ~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~ 217 (250)
T PRK13397 140 GALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIM 217 (250)
T ss_pred HHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh-CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEE
Confidence 355566544567899987 1 1111 11234455566543 678876 5533332 556778899999653
No 487
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=53.09 E-value=60 Score=22.39 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=59.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEE---Eec-----CHHHHHHHHhcCCCccEEEEeCCCCCCCHHH-HHHHHHh-
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVE---VAE-----NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE-ATKAMRA- 95 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~---~~~-----~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~-~~~~l~~- 95 (145)
+.+|+++-.+.. +..+...|+..|+.+. .+. ...+....+.. ..+|+|++-. .++.+ +.+.+++
T Consensus 117 ~~~vl~~~g~~~-~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~-~~~~~v~ftS----~~~~~~~~~~~~~~ 190 (231)
T PF02602_consen 117 GKRVLILRGEGG-RPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDR-GEIDAVVFTS----PSAVRAFLELLKKN 190 (231)
T ss_dssp TEEEEEEESSSS-CHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHH-TTTSEEEESS----HHHHHHHHHHSSGH
T ss_pred CCeEEEEcCCCc-cHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHc-CCCCEEEECC----HHHHHHHHHHhHhh
Confidence 357888777643 6778889988886543 222 34456666665 4689888642 22333 3333333
Q ss_pred --hCCCCcEEEEecCCChHHHHHHHHhcccE-EeeCCCCHHHHH
Q 045936 96 --MKVESKIVGVTSRNSETEREVFMQAGLDL-CYTKPLTMAKIV 136 (145)
Q Consensus 96 --~~~~~~ii~lt~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~ 136 (145)
...+.+++.+ .+.....+.+.|... ++.+-.+.+.|.
T Consensus 191 ~~~~~~~~~~~i----g~~ta~~l~~~g~~~~~va~~~~~~~lv 230 (231)
T PF02602_consen 191 GALLKRVPIVAI----GPRTAKALRELGFKVDIVAERPTIEALV 230 (231)
T ss_dssp HHHHTTSEEEES----SHHHHHHHHHTT-SCSEEESSSSHHHHH
T ss_pred hhhhhCCEEEEE----CHHHHHHHHHcCCCceEECCCCChhHhh
Confidence 2335555544 334556667888876 777766776664
No 488
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=52.98 E-value=93 Score=23.12 Aligned_cols=108 Identities=10% Similarity=0.095 Sum_probs=61.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEEEe---cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVEVA---ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~~~---~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
..+.+++++.+. .+.++...++.+. .|... .+..+.+..... ..|++++-....+ -|..+++.+. ..+
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~--~~d~~v~~s~~Eg-f~~~~lEAma---~G~ 282 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK--NVSALLLTSKFEG-FPMTLLEAMS---YGI 282 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh--cCcEEEECCcccC-cChHHHHHHH---cCC
Confidence 356677766553 4455555555543 23322 233343333332 2577766443222 2444555443 356
Q ss_pred cEEEEec-CCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 101 KIVGVTS-RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 101 ~ii~lt~-~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|||. +. ... .......|-.+++..|-+.+++..++.+++.
T Consensus 283 Pvv~-s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~ 323 (359)
T PRK09922 283 PCIS-SDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVIS 323 (359)
T ss_pred CEEE-eCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHh
Confidence 7764 33 222 2345567888999999999999999988764
No 489
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=52.89 E-value=41 Score=27.99 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeC--CCCHHHHHHHHH
Q 045936 82 PVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTK--PLTMAKIVPLLE 140 (145)
Q Consensus 82 ~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~k--P~~~~~l~~~l~ 140 (145)
+..+..+.++.+|+. ++.++++|+.........+.+.|.++|+.. |.+.-++.+.++
T Consensus 442 ~R~~a~e~I~~Lr~~--GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ 500 (673)
T PRK14010 442 IKDGLVERFRELREM--GIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQ 500 (673)
T ss_pred CcHHHHHHHHHHHHC--CCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHH
Confidence 344566788888876 467788999888888888999999988743 444444444444
No 490
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=52.80 E-value=49 Score=19.90 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=39.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHHHHhcCCCccEEEEeCCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMP 82 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~ 82 (145)
..++.-+|-++......+..+...+. ++. ...|..+....+.. ..+|+|++|--..
T Consensus 23 ~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 23 AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD-GKFDLIVTNPPYG 81 (117)
T ss_dssp TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT-T-EEEEEE--STT
T ss_pred CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC-ceeEEEEECCCCc
Confidence 35789999999999999988887764 233 55666666655555 5799999986544
No 491
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=52.77 E-value=81 Score=22.41 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCCCcEEEEe-----cCCChHHHHHHHHhcccEEeeC--CCC-HHHHHHHHH
Q 045936 88 EATKAMRAMKVESKIVGVT-----SRNSETEREVFMQAGLDLCYTK--PLT-MAKIVPLLE 140 (145)
Q Consensus 88 ~~~~~l~~~~~~~~ii~lt-----~~~~~~~~~~~~~~g~~~~l~k--P~~-~~~l~~~l~ 140 (145)
++++.+++. .+.|+++++ ..........+.+.|++.++.. |+. .+++...++
T Consensus 64 ~~v~~vr~~-~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~ 123 (244)
T PRK13125 64 PLLEEVRKD-VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVE 123 (244)
T ss_pred HHHHHHhcc-CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHH
Confidence 455566533 456765432 1223334667788888888765 332 344444443
No 492
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=52.74 E-value=79 Score=22.26 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=49.4
Q ss_pred ecCHHHHHHHHhcCCCcc-EEEEeCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 56 AENGKEAVDLFRTGAKFH-IVFIDMEMPV---MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 56 ~~~~~~~l~~l~~~~~~d-lil~d~~~~~---~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..+..+..+.+.. ..++ ++++|.+-.+ ..-+++++.+++.. ..|+++-.+-.+.+....++..|++..+
T Consensus 26 ~~d~~~~a~~~~~-~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ 98 (243)
T cd04731 26 AGDPVELAKRYNE-QGADELVFLDITASSEGRETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVS 98 (243)
T ss_pred CCCHHHHHHHHHH-CCCCEEEEEcCCcccccCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEE
Confidence 4477777777766 3455 7788877432 22356777777753 5789888888888888888888988764
No 493
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=52.41 E-value=1e+02 Score=23.49 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=56.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe-EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCH--HHHHHHHHhhCCCCcE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK-VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG--IEATKAMRAMKVESKI 102 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~-v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g--~~~~~~l~~~~~~~~i 102 (145)
.+|+-+|-++...+..+.-++.+|.. +. ...+..+.+.... ..+|+|++|- ...| .++++.|.+..| .-
T Consensus 256 ~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~--~~~D~vi~DP---Pr~G~~~~~l~~l~~~~p--~~ 328 (374)
T TIGR02085 256 TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM--SAPELVLVNP---PRRGIGKELCDYLSQMAP--KF 328 (374)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC--CCCCEEEECC---CCCCCcHHHHHHHHhcCC--Ce
Confidence 47999999999988888888777753 33 4556665543322 3599999983 3333 356777766544 23
Q ss_pred EEEecCCChHHHHHHHHh
Q 045936 103 VGVTSRNSETEREVFMQA 120 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~ 120 (145)
+++.+....+..+++...
T Consensus 329 ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 329 ILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred EEEEEeCHHHHHHHHHHh
Confidence 555555556666666555
No 494
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=52.38 E-value=65 Score=21.18 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=25.1
Q ss_pred CCccEEEEeCCCCCC-----------CHH-HHHHHHHhhCCCCcEEEEecC
Q 045936 70 AKFHIVFIDMEMPVM-----------DGI-EATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 70 ~~~dlil~d~~~~~~-----------~g~-~~~~~l~~~~~~~~ii~lt~~ 108 (145)
..||+|++-+-..+. ..+ .+++.+++..+..+|++++..
T Consensus 55 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~ 105 (189)
T cd01825 55 LPPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGPP 105 (189)
T ss_pred CCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 568999988754431 112 356666666678888888654
No 495
>PLN02316 synthase/transferase
Probab=52.26 E-value=1.7e+02 Score=25.95 Aligned_cols=111 Identities=11% Similarity=-0.024 Sum_probs=57.8
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhcCC----eEEEecCHHHHH-HHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCC
Q 045936 27 YFALVVDDD--PMIRRIHSMILKSVGF----KVEVAENGKEAV-DLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVE 99 (145)
Q Consensus 27 ~~vlii~~~--~~~~~~l~~~l~~~g~----~v~~~~~~~~~l-~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~ 99 (145)
.+++|+++- +.....++.+....|. .+..+-...+.+ ..+.. ..|++++-... ..-|+..+..++ ..
T Consensus 870 ~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya--aADiflmPS~~-EP~GLvqLEAMa---~G 943 (1036)
T PLN02316 870 GQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA--GADFILVPSIF-EPCGLTQLTAMR---YG 943 (1036)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH--hCcEEEeCCcc-cCccHHHHHHHH---cC
Confidence 456777753 3334555555554432 233222223332 23333 36888876432 222444444443 34
Q ss_pred CcEEEEecCCChHHHHHH---------HHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 100 SKIVGVTSRNSETEREVF---------MQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~~~---------~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+|+-....-.+.+... ...+..+|+..|.+++.|..+|.+.+
T Consensus 944 tppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL 996 (1036)
T PLN02316 944 SIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAI 996 (1036)
T ss_pred CCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHH
Confidence 555554333333333221 01147899999999999998887765
No 496
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=52.26 E-value=85 Score=22.44 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=47.3
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCC-C--HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHh-----c-ccEEe
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMPVM-D--GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQA-----G-LDLCY 126 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~~~-~--g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~-----g-~~~~l 126 (145)
+..+.++.+.....-.+++.|+.-.++ . .+++++.+++. .+.|+++-.+-.+.+....+... | +++.+
T Consensus 145 ~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~-~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvi 221 (241)
T PRK14114 145 DPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIE-AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVI 221 (241)
T ss_pred CHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEE
Confidence 345666666553334689998877654 3 45688888766 47899888888888888887775 5 77654
No 497
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=52.21 E-value=84 Score=22.41 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=58.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhcCCe-EE--EecCHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHhh-
Q 045936 22 SKNRPYFALVVDDDPMIRRIHSMILKSVGFK-VE--VAENGKEAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRAM- 96 (145)
Q Consensus 22 ~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~-v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~~- 96 (145)
...+.++|-.+|.++.+.+....-..+..+. +. .+.+++...+. .. ..+|.|++-+-++. .+..+.+..+++-
T Consensus 95 ~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l-~d-~s~DtVV~TlvLCSve~~~k~L~e~~rlL 172 (252)
T KOG4300|consen 95 PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL-AD-GSYDTVVCTLVLCSVEDPVKQLNEVRRLL 172 (252)
T ss_pred cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc-cc-CCeeeEEEEEEEeccCCHHHHHHHHHHhc
Confidence 3345678999999999999888877665432 32 45666666554 33 46999998877754 5667777777774
Q ss_pred CCCCcEEEEec
Q 045936 97 KVESKIVGVTS 107 (145)
Q Consensus 97 ~~~~~ii~lt~ 107 (145)
.|+..++++-.
T Consensus 173 RpgG~iifiEH 183 (252)
T KOG4300|consen 173 RPGGRIIFIEH 183 (252)
T ss_pred CCCcEEEEEec
Confidence 67777877744
No 498
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=52.17 E-value=1e+02 Score=23.38 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCC
Q 045936 70 AKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 70 ~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
..||++++ .+.|+.+ +.+.+.+|+..|++|++.+.++.
T Consensus 75 ~~pd~~i~-iD~p~Fn-l~lak~~k~~~~~i~viyyi~Pq 112 (347)
T PRK14089 75 KQADKVLL-MDSSSFN-IPLAKKIKKAYPKKEIIYYILPQ 112 (347)
T ss_pred cCCCEEEE-eCCCCCC-HHHHHHHHhcCCCCCEEEEECcc
Confidence 36896654 3446655 45888999988899999887765
No 499
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=51.87 E-value=77 Score=21.83 Aligned_cols=79 Identities=19% Similarity=0.069 Sum_probs=43.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEE-ecCHHH---HHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEV-AENGKE---AVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVES 100 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~-~~~~~~---~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~ 100 (145)
..+++|.+....+...+...|.+.|+.|.. ..+.+. ....+.. ...++.++..++.+.+.+ .++..+......+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 84 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEA-AGGKARARQVDVRDRAALKAAVAAGVEDFGRL 84 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 347899998888888888888778988764 444332 2233333 223344444444444333 3444444443334
Q ss_pred cEEEE
Q 045936 101 KIVGV 105 (145)
Q Consensus 101 ~ii~l 105 (145)
.+++.
T Consensus 85 d~vi~ 89 (251)
T PRK12826 85 DILVA 89 (251)
T ss_pred CEEEE
Confidence 44433
No 500
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=51.87 E-value=1.2e+02 Score=24.12 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=51.5
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCC-----C--CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhccc---E
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPV-----M--DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLD---L 124 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~-----~--~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~---~ 124 (145)
.+++.+++.+.... .+|.+.+.--.+. . -|++.++++... ..+|++.+.+- +.+....++..|++ +
T Consensus 396 S~h~~~e~~~a~~~--gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~-~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~g 471 (502)
T PLN02898 396 SCKTPEQAEQAWKD--GADYIGCGGVFPTNTKANNKTIGLDGLREVCEA-SKLPVVAIGGI-SASNAASVMESGAPNLKG 471 (502)
T ss_pred eCCCHHHHHHHhhc--CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc-CCCCEEEECCC-CHHHHHHHHHcCCCcCce
Confidence 67788887666554 4888765432221 1 267888887654 46888877554 57777888999988 5
Q ss_pred E-----eeCCCCHHHHHHHHHH
Q 045936 125 C-----YTKPLTMAKIVPLLEE 141 (145)
Q Consensus 125 ~-----l~kP~~~~~l~~~l~~ 141 (145)
+ +...-++.+....+.+
T Consensus 472 vav~~~i~~~~d~~~~~~~~~~ 493 (502)
T PLN02898 472 VAVVSALFDQEDVLKATRKLHA 493 (502)
T ss_pred EEEEeHHhcCCCHHHHHHHHHH
Confidence 4 3344445444443333
Done!