Query 045936
Match_columns 145
No_of_seqs 120 out of 1173
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 12:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 100.0 4.1E-29 1.4E-33 161.2 16.6 120 25-145 11-133 (134)
2 3gl9_A Response regulator; bet 99.9 7.9E-25 2.7E-29 138.4 17.4 117 27-144 3-121 (122)
3 3t6k_A Response regulator rece 99.9 2.7E-24 9.2E-29 138.3 18.0 118 26-144 4-123 (136)
4 3f6p_A Transcriptional regulat 99.9 3E-24 1E-28 135.3 16.8 117 27-145 3-119 (120)
5 3h1g_A Chemotaxis protein CHEY 99.9 4.9E-24 1.7E-28 135.8 17.3 120 25-144 4-126 (129)
6 2lpm_A Two-component response 99.9 7.9E-27 2.7E-31 148.3 3.5 114 25-144 7-121 (123)
7 4e7p_A Response regulator; DNA 99.9 6.5E-24 2.2E-28 138.5 17.3 127 18-145 12-140 (150)
8 1dbw_A Transcriptional regulat 99.9 1.6E-23 5.5E-28 132.7 18.4 118 26-144 3-120 (126)
9 3eod_A Protein HNR; response r 99.9 1E-23 3.6E-28 134.1 16.1 119 25-144 6-125 (130)
10 3rqi_A Response regulator prot 99.9 1.8E-24 6.3E-29 145.9 13.2 118 25-143 6-123 (184)
11 1srr_A SPO0F, sporulation resp 99.9 1.8E-23 6.2E-28 132.0 16.5 117 27-144 4-120 (124)
12 3hv2_A Response regulator/HD d 99.9 2.5E-23 8.4E-28 136.1 17.5 119 25-144 13-132 (153)
13 3m6m_D Sensory/regulatory prot 99.9 2.1E-23 7.3E-28 135.2 16.8 118 25-143 13-134 (143)
14 2pl1_A Transcriptional regulat 99.9 4.4E-23 1.5E-27 129.5 17.7 117 27-144 1-117 (121)
15 3crn_A Response regulator rece 99.9 2.5E-23 8.5E-28 133.0 16.8 118 26-144 3-120 (132)
16 3hzh_A Chemotaxis response reg 99.9 1.4E-23 4.6E-28 138.1 15.8 120 25-145 35-157 (157)
17 2r25_B Osmosensing histidine p 99.9 3.6E-23 1.2E-27 132.5 17.3 119 26-144 2-126 (133)
18 3hdv_A Response regulator; PSI 99.9 4.6E-23 1.6E-27 132.1 17.4 120 25-144 6-126 (136)
19 3gt7_A Sensor protein; structu 99.9 3.9E-23 1.3E-27 135.5 17.2 119 25-144 6-126 (154)
20 3hdg_A Uncharacterized protein 99.9 1.4E-23 4.8E-28 134.6 14.7 119 25-144 6-124 (137)
21 1tmy_A CHEY protein, TMY; chem 99.9 3.2E-23 1.1E-27 130.1 16.0 117 27-144 3-120 (120)
22 3kto_A Response regulator rece 99.9 4.4E-24 1.5E-28 137.2 12.3 119 25-144 5-125 (136)
23 4dad_A Putative pilus assembly 99.9 6.9E-24 2.4E-28 137.5 12.9 124 21-144 15-140 (146)
24 3f6c_A Positive transcription 99.9 8.8E-24 3E-28 135.0 13.2 119 26-145 1-120 (134)
25 3jte_A Response regulator rece 99.9 7.7E-23 2.6E-27 132.1 17.4 119 26-144 3-122 (143)
26 3lua_A Response regulator rece 99.9 2E-23 6.7E-28 134.5 14.1 121 25-145 3-127 (140)
27 3snk_A Response regulator CHEY 99.9 1.7E-24 5.8E-29 138.8 8.9 119 25-144 13-132 (135)
28 3b2n_A Uncharacterized protein 99.9 6.6E-23 2.2E-27 131.2 16.3 118 26-144 3-122 (133)
29 3r0j_A Possible two component 99.9 4E-23 1.4E-27 145.4 16.6 119 25-144 22-140 (250)
30 3i42_A Response regulator rece 99.9 4.2E-23 1.5E-27 130.8 14.8 117 26-144 3-121 (127)
31 1xhf_A DYE resistance, aerobic 99.9 1.4E-22 4.8E-27 127.6 17.1 117 26-144 3-119 (123)
32 1zgz_A Torcad operon transcrip 99.9 2.1E-22 7.2E-27 126.6 17.8 116 27-144 3-118 (122)
33 3grc_A Sensor protein, kinase; 99.9 1.9E-23 6.4E-28 134.5 13.1 119 25-144 5-126 (140)
34 1jbe_A Chemotaxis protein CHEY 99.9 2E-22 6.8E-27 127.7 17.6 119 25-144 3-124 (128)
35 3heb_A Response regulator rece 99.9 1.6E-22 5.4E-27 132.0 17.3 120 25-144 3-134 (152)
36 3eul_A Possible nitrate/nitrit 99.9 1.4E-22 4.9E-27 132.2 17.1 123 22-145 11-135 (152)
37 3cnb_A DNA-binding response re 99.9 2.2E-22 7.6E-27 129.6 17.7 119 25-144 7-129 (143)
38 1mb3_A Cell division response 99.9 1.2E-22 4E-27 128.0 15.4 117 27-144 2-120 (124)
39 1p6q_A CHEY2; chemotaxis, sign 99.9 1E-22 3.6E-27 129.2 15.1 118 26-144 6-126 (129)
40 3kht_A Response regulator; PSI 99.9 1.8E-22 6.3E-27 130.5 16.5 119 25-144 4-127 (144)
41 3cfy_A Putative LUXO repressor 99.9 7.3E-23 2.5E-27 131.7 14.3 117 27-144 5-121 (137)
42 2a9o_A Response regulator; ess 99.9 2.8E-22 9.7E-27 125.5 16.6 116 27-144 2-117 (120)
43 2qzj_A Two-component response 99.9 1.2E-22 4.2E-27 130.5 15.3 117 26-144 4-120 (136)
44 1mvo_A PHOP response regulator 99.9 2.1E-22 7.1E-27 128.9 16.2 117 27-144 4-120 (136)
45 2qxy_A Response regulator; reg 99.9 2.2E-22 7.4E-27 129.8 16.2 118 25-144 3-120 (142)
46 3lte_A Response regulator; str 99.9 3.5E-22 1.2E-26 127.2 16.9 118 25-144 5-124 (132)
47 1i3c_A Response regulator RCP1 99.9 4.5E-22 1.5E-26 129.6 17.7 120 25-144 7-136 (149)
48 1dz3_A Stage 0 sporulation pro 99.9 1.8E-22 6.1E-27 128.5 15.4 117 27-144 3-122 (130)
49 3mm4_A Histidine kinase homolo 99.9 2.2E-22 7.6E-27 138.1 17.0 119 24-144 59-195 (206)
50 2zay_A Response regulator rece 99.9 1.7E-22 5.9E-27 131.0 15.5 119 25-144 7-127 (147)
51 3kcn_A Adenylate cyclase homol 99.9 2.6E-22 8.8E-27 131.0 16.4 119 25-144 3-122 (151)
52 3ilh_A Two component response 99.9 4.3E-22 1.5E-26 128.6 17.2 120 25-144 8-138 (146)
53 2qr3_A Two-component system re 99.9 3.6E-22 1.2E-26 128.3 16.3 118 26-144 3-125 (140)
54 3h5i_A Response regulator/sens 99.9 9.7E-23 3.3E-27 131.4 13.7 118 26-144 5-123 (140)
55 1yio_A Response regulatory pro 99.9 1E-22 3.6E-27 139.3 14.3 118 26-144 4-121 (208)
56 3luf_A Two-component system re 99.9 3.2E-22 1.1E-26 141.8 17.1 120 25-144 123-244 (259)
57 2ayx_A Sensor kinase protein R 99.9 3.8E-22 1.3E-26 141.0 17.4 121 23-144 126-246 (254)
58 3nhm_A Response regulator; pro 99.9 1.7E-22 5.7E-27 128.9 14.0 116 26-144 4-121 (133)
59 2rjn_A Response regulator rece 99.9 6.1E-22 2.1E-26 129.5 16.9 119 25-144 6-125 (154)
60 1a04_A Nitrate/nitrite respons 99.9 3.6E-22 1.2E-26 137.3 16.5 119 25-144 4-124 (215)
61 1k68_A Phytochrome response re 99.9 8.6E-22 3E-26 126.1 17.2 119 26-144 2-130 (140)
62 3cg0_A Response regulator rece 99.9 4.2E-22 1.5E-26 127.9 15.7 118 25-144 8-127 (140)
63 3q9s_A DNA-binding response re 99.9 2.5E-22 8.5E-27 141.6 15.7 117 26-144 37-153 (249)
64 3a10_A Response regulator; pho 99.9 2.8E-22 9.5E-27 125.0 14.0 114 27-143 2-115 (116)
65 3cz5_A Two-component response 99.9 7.8E-22 2.7E-26 128.8 16.6 119 25-144 4-124 (153)
66 2jba_A Phosphate regulon trans 99.9 6.8E-23 2.3E-27 129.6 10.9 117 27-144 3-121 (127)
67 1qkk_A DCTD, C4-dicarboxylate 99.9 5.1E-22 1.7E-26 130.0 15.4 118 26-144 3-120 (155)
68 3cg4_A Response regulator rece 99.9 2.3E-22 7.9E-27 129.6 13.3 119 25-144 6-126 (142)
69 1zh2_A KDP operon transcriptio 99.9 5.4E-22 1.8E-26 124.4 14.6 116 27-144 2-117 (121)
70 1k66_A Phytochrome response re 99.9 1.5E-21 5.1E-26 126.3 16.8 120 25-144 5-137 (149)
71 1dcf_A ETR1 protein; beta-alph 99.9 1.5E-21 5E-26 125.1 16.3 118 25-144 6-128 (136)
72 1kgs_A DRRD, DNA binding respo 99.9 4.8E-22 1.7E-26 137.4 14.9 117 27-144 3-119 (225)
73 3dzd_A Transcriptional regulat 99.9 2.2E-22 7.4E-27 149.2 13.9 116 28-144 2-117 (368)
74 3n0r_A Response regulator; sig 99.9 8E-23 2.7E-27 146.9 10.7 115 26-144 160-276 (286)
75 3c3m_A Response regulator rece 99.9 2.1E-21 7.2E-26 124.8 16.2 117 27-144 4-122 (138)
76 3cu5_A Two component transcrip 99.9 6.5E-22 2.2E-26 127.8 13.2 117 27-144 3-122 (141)
77 1ys7_A Transcriptional regulat 99.9 5.1E-22 1.7E-26 137.9 13.1 118 26-144 7-124 (233)
78 1s8n_A Putative antiterminator 99.9 8.8E-22 3E-26 134.6 14.0 117 26-144 13-130 (205)
79 2jk1_A HUPR, hydrogenase trans 99.9 3.5E-21 1.2E-25 123.8 16.0 115 28-144 3-118 (139)
80 3n53_A Response regulator rece 99.9 2.2E-22 7.6E-27 129.5 10.2 117 26-144 3-121 (140)
81 2gkg_A Response regulator homo 99.9 1.7E-21 5.9E-26 122.8 14.1 116 27-144 6-124 (127)
82 2qvg_A Two component response 99.9 4.1E-21 1.4E-25 123.8 16.0 119 25-143 6-133 (143)
83 3eqz_A Response regulator; str 99.9 7.4E-22 2.5E-26 125.9 11.8 117 26-144 3-124 (135)
84 2qsj_A DNA-binding response re 99.9 2.3E-21 7.7E-26 126.7 13.8 119 26-144 3-123 (154)
85 1ny5_A Transcriptional regulat 99.9 3.6E-21 1.2E-25 143.6 16.2 116 27-143 1-116 (387)
86 3eq2_A Probable two-component 99.9 1.5E-21 5E-26 145.6 14.0 117 26-143 5-122 (394)
87 2rdm_A Response regulator rece 99.9 1E-20 3.5E-25 120.3 16.0 117 26-144 5-122 (132)
88 2oqr_A Sensory transduction pr 99.9 4.2E-21 1.4E-25 133.1 14.7 117 27-145 5-121 (230)
89 2pln_A HP1043, response regula 99.9 2E-20 6.8E-25 119.9 16.8 115 24-144 16-132 (137)
90 2j48_A Two-component sensor ki 99.9 6.1E-21 2.1E-25 118.6 13.6 114 27-144 2-117 (119)
91 3kyj_B CHEY6 protein, putative 99.9 3.6E-21 1.2E-25 124.6 12.3 121 22-143 9-143 (145)
92 2gwr_A DNA-binding response re 99.9 5.5E-21 1.9E-25 133.5 13.9 116 27-144 6-121 (238)
93 2qv0_A Protein MRKE; structura 99.9 2.4E-20 8.2E-25 120.3 15.9 117 25-144 8-126 (143)
94 3t8y_A CHEB, chemotaxis respon 99.9 2.8E-20 9.6E-25 123.1 16.1 118 25-144 24-154 (164)
95 1w25_A Stalked-cell differenti 99.9 1.7E-20 5.9E-25 142.1 16.6 116 27-143 2-119 (459)
96 3klo_A Transcriptional regulat 99.9 1.3E-21 4.4E-26 135.7 9.5 120 25-145 6-129 (225)
97 3c3w_A Two component transcrip 99.9 8E-22 2.7E-26 136.8 8.2 117 27-144 2-120 (225)
98 1p2f_A Response regulator; DRR 99.9 2E-20 6.7E-25 129.0 14.6 114 27-144 3-116 (220)
99 3c97_A Signal transduction his 99.9 1.6E-20 5.5E-25 120.9 13.0 115 26-144 10-129 (140)
100 2b4a_A BH3024; flavodoxin-like 99.9 9.1E-21 3.1E-25 121.6 11.4 120 21-144 10-130 (138)
101 2hqr_A Putative transcriptiona 99.8 9.5E-20 3.2E-24 125.8 15.5 113 27-145 1-115 (223)
102 1dc7_A NTRC, nitrogen regulati 99.8 1.7E-22 5.8E-27 127.1 0.3 118 26-144 3-120 (124)
103 3bre_A Probable two-component 99.8 6.2E-20 2.1E-24 134.9 13.0 117 25-142 17-136 (358)
104 3sy8_A ROCR; TIM barrel phosph 99.8 4.6E-20 1.6E-24 138.0 12.5 118 26-143 3-126 (400)
105 1qo0_D AMIR; binding protein, 99.8 5.9E-20 2E-24 124.6 10.5 113 25-143 11-123 (196)
106 1a2o_A CHEB methylesterase; ba 99.8 3.3E-18 1.1E-22 125.9 15.8 116 26-143 3-131 (349)
107 2vyc_A Biodegradative arginine 99.8 9.3E-19 3.2E-23 139.9 10.6 118 27-144 1-132 (755)
108 3luf_A Two-component system re 99.7 1.2E-17 4.2E-22 118.2 10.1 102 27-132 5-107 (259)
109 3cwo_X Beta/alpha-barrel prote 99.3 1.7E-12 5.8E-17 89.7 6.2 92 51-143 6-99 (237)
110 1w25_A Stalked-cell differenti 99.2 2.8E-09 9.4E-14 80.6 17.3 115 26-143 152-268 (459)
111 3n75_A LDC, lysine decarboxyla 98.2 3.8E-06 1.3E-10 67.0 7.6 99 39-140 19-118 (715)
112 3q7r_A Transcriptional regulat 98.2 3.3E-05 1.1E-09 46.1 9.8 108 22-144 8-117 (121)
113 2ayx_A Sensor kinase protein R 98.1 4.2E-05 1.4E-09 53.4 10.1 98 22-143 7-104 (254)
114 2yxb_A Coenzyme B12-dependent 98.0 0.00078 2.7E-08 44.0 14.2 116 26-143 18-143 (161)
115 1ccw_A Protein (glutamate muta 97.3 0.0073 2.5E-07 38.2 11.2 109 34-143 15-134 (137)
116 3cwo_X Beta/alpha-barrel prote 96.8 0.0071 2.4E-07 40.9 8.2 83 58-141 131-222 (237)
117 2i2x_B MTAC, methyltransferase 96.7 0.077 2.6E-06 37.1 13.0 110 26-142 123-241 (258)
118 3ezx_A MMCP 1, monomethylamine 96.5 0.023 7.9E-07 38.8 8.7 97 27-127 93-202 (215)
119 1y80_A Predicted cobalamin bin 96.5 0.062 2.1E-06 36.2 10.7 97 27-127 89-196 (210)
120 2xij_A Methylmalonyl-COA mutas 96.4 0.077 2.6E-06 42.7 12.3 115 28-143 606-729 (762)
121 1req_A Methylmalonyl-COA mutas 96.4 0.062 2.1E-06 43.0 11.7 116 27-143 597-721 (727)
122 3q58_A N-acetylmannosamine-6-p 96.4 0.086 2.9E-06 36.3 11.2 88 36-127 115-209 (229)
123 3igs_A N-acetylmannosamine-6-p 96.0 0.18 6.1E-06 34.7 11.3 88 36-127 115-209 (232)
124 1xrs_B D-lysine 5,6-aminomutas 96.0 0.19 6.4E-06 35.3 11.3 112 26-141 120-254 (262)
125 3fkq_A NTRC-like two-domain pr 95.7 0.32 1.1E-05 35.7 12.2 104 24-142 19-125 (373)
126 3qja_A IGPS, indole-3-glycerol 94.9 0.66 2.3E-05 32.7 12.5 98 28-127 138-241 (272)
127 1wv2_A Thiazole moeity, thiazo 94.6 0.78 2.7E-05 32.2 11.0 95 42-140 127-233 (265)
128 3kp1_A D-ornithine aminomutase 94.6 0.29 1E-05 38.7 9.1 112 26-141 602-731 (763)
129 4e38_A Keto-hydroxyglutarate-a 94.0 0.52 1.8E-05 32.5 8.8 94 42-140 27-124 (232)
130 3o63_A Probable thiamine-phosp 94.0 0.95 3.3E-05 31.3 10.1 86 55-143 141-239 (243)
131 3qz6_A HPCH/HPAI aldolase; str 93.6 1.3 4.4E-05 31.0 10.8 100 42-142 6-110 (261)
132 2ekc_A AQ_1548, tryptophan syn 93.6 0.67 2.3E-05 32.4 8.8 57 86-142 81-143 (262)
133 2htm_A Thiazole biosynthesis p 93.2 0.39 1.3E-05 33.7 7.0 93 45-140 119-224 (268)
134 3lab_A Putative KDPG (2-keto-3 93.1 0.58 2E-05 31.9 7.6 63 72-138 39-101 (217)
135 3bul_A Methionine synthase; tr 92.9 1.7 5.8E-05 34.0 10.8 99 26-127 98-210 (579)
136 1r8j_A KAIA; circadian clock p 92.7 1.8 6.2E-05 30.4 10.9 82 25-108 8-90 (289)
137 3f4w_A Putative hexulose 6 pho 92.4 1.5 5.1E-05 29.1 9.0 104 37-142 90-206 (211)
138 1qop_A Tryptophan synthase alp 92.3 1.4 4.7E-05 30.8 9.0 56 86-141 81-142 (268)
139 3tsm_A IGPS, indole-3-glycerol 91.9 2.4 8.1E-05 29.9 12.3 99 37-137 156-263 (272)
140 2lci_A Protein OR36; structura 91.9 1.1 3.7E-05 26.3 6.6 27 28-54 53-79 (134)
141 1wa3_A 2-keto-3-deoxy-6-phosph 91.8 1.2 4E-05 29.6 7.9 91 45-139 6-100 (205)
142 2v82_A 2-dehydro-3-deoxy-6-pho 91.3 1.7 5.8E-05 29.0 8.3 78 44-126 95-174 (212)
143 3s83_A Ggdef family protein; s 90.9 1.9 6.6E-05 29.5 8.5 100 41-141 143-254 (259)
144 3tqv_A Nicotinate-nucleotide p 90.8 1.8 6.2E-05 30.7 8.2 69 72-142 169-239 (287)
145 3inp_A D-ribulose-phosphate 3- 90.5 1.5 5.2E-05 30.4 7.6 86 56-142 39-130 (246)
146 3vnd_A TSA, tryptophan synthas 90.3 0.78 2.7E-05 32.2 6.0 55 87-141 83-143 (267)
147 3nav_A Tryptophan synthase alp 89.9 1.3 4.4E-05 31.2 6.9 55 86-140 84-144 (271)
148 2xci_A KDO-transferase, 3-deox 89.4 2 6.9E-05 31.2 7.9 110 26-144 225-345 (374)
149 3rht_A (gatase1)-like protein; 89.2 0.21 7.2E-06 35.0 2.4 79 27-109 5-89 (259)
150 4fxs_A Inosine-5'-monophosphat 89.2 3.1 0.00011 31.8 9.0 66 59-127 233-299 (496)
151 3l9w_A Glutathione-regulated p 88.8 3.4 0.00012 30.8 8.8 93 27-127 28-121 (413)
152 1req_B Methylmalonyl-COA mutas 88.6 1.6 5.4E-05 34.6 7.1 98 40-142 528-632 (637)
153 3fwz_A Inner membrane protein 88.6 2.9 0.0001 25.7 10.3 54 71-127 71-124 (140)
154 1geq_A Tryptophan synthase alp 87.9 4.8 0.00016 27.4 8.9 52 86-138 68-125 (248)
155 2gek_A Phosphatidylinositol ma 87.7 6.1 0.00021 28.3 11.0 107 26-144 240-348 (406)
156 1yad_A Regulatory protein TENI 87.4 4.9 0.00017 26.9 11.0 73 50-126 110-190 (221)
157 1mxs_A KDPG aldolase; 2-keto-3 87.0 3 0.0001 28.4 7.0 93 40-137 17-113 (225)
158 4fo4_A Inosine 5'-monophosphat 87.0 4.7 0.00016 29.6 8.5 66 60-127 110-176 (366)
159 3l0g_A Nicotinate-nucleotide p 87.0 2.9 0.0001 29.9 7.1 69 72-142 178-248 (300)
160 4af0_A Inosine-5'-monophosphat 86.8 3.2 0.00011 32.3 7.6 55 71-126 293-348 (556)
161 4avf_A Inosine-5'-monophosphat 86.7 4.9 0.00017 30.7 8.7 66 60-127 231-297 (490)
162 4e5v_A Putative THUA-like prot 86.7 1.6 5.5E-05 30.8 5.7 80 25-107 3-94 (281)
163 1ujp_A Tryptophan synthase alp 86.6 2.7 9.3E-05 29.5 6.8 76 62-140 35-138 (271)
164 3ajx_A 3-hexulose-6-phosphate 86.3 1 3.4E-05 29.9 4.3 47 86-132 40-88 (207)
165 1qpo_A Quinolinate acid phosph 86.3 7 0.00024 27.7 9.8 94 29-126 168-267 (284)
166 1wbh_A KHG/KDPG aldolase; lyas 86.1 5.2 0.00018 27.0 7.8 87 44-135 11-101 (214)
167 3r2g_A Inosine 5'-monophosphat 86.1 5 0.00017 29.5 8.2 65 61-127 103-168 (361)
168 3ceu_A Thiamine phosphate pyro 85.7 3.1 0.00011 27.8 6.5 67 55-125 94-169 (210)
169 3usb_A Inosine-5'-monophosphat 85.6 5.7 0.00019 30.5 8.6 66 60-127 258-324 (511)
170 2q5c_A NTRC family transcripti 85.5 6.1 0.00021 26.2 13.2 115 27-143 5-139 (196)
171 1vhc_A Putative KHG/KDPG aldol 85.3 6.8 0.00023 26.6 8.5 93 42-139 10-106 (224)
172 2vws_A YFAU, 2-keto-3-deoxy su 84.8 7.9 0.00027 27.0 13.0 99 42-142 9-112 (267)
173 2v5j_A 2,4-dihydroxyhept-2-ENE 84.7 8.5 0.00029 27.2 12.8 84 56-141 47-132 (287)
174 3dr5_A Putative O-methyltransf 84.6 6.8 0.00023 26.2 7.9 76 26-105 81-161 (221)
175 2fli_A Ribulose-phosphate 3-ep 84.5 4.6 0.00016 26.9 7.0 70 72-142 132-217 (220)
176 1wa3_A 2-keto-3-deoxy-6-phosph 84.3 5.7 0.00019 26.1 7.3 75 47-126 101-176 (205)
177 3paj_A Nicotinate-nucleotide p 83.8 4.8 0.00016 29.0 7.0 54 87-142 219-272 (320)
178 1dxe_A 2-dehydro-3-deoxy-galac 83.8 8.6 0.00029 26.5 12.2 99 42-141 10-112 (256)
179 1xm3_A Thiazole biosynthesis p 83.8 8.8 0.0003 26.6 8.8 74 50-126 126-205 (264)
180 2yw3_A 4-hydroxy-2-oxoglutarat 83.7 7.7 0.00026 25.9 11.1 91 46-143 100-198 (207)
181 1g5t_A COB(I)alamin adenosyltr 83.6 4.3 0.00015 27.1 6.4 45 70-114 119-168 (196)
182 1xi3_A Thiamine phosphate pyro 83.4 7.5 0.00026 25.6 10.6 68 55-126 114-188 (215)
183 2l69_A Rossmann 2X3 fold prote 83.3 5 0.00017 23.5 10.5 113 28-144 4-122 (134)
184 2gjl_A Hypothetical protein PA 83.1 10 0.00036 27.0 12.4 81 43-126 111-199 (328)
185 1qdl_B Protein (anthranilate s 83.0 4.7 0.00016 26.5 6.4 78 29-107 4-85 (195)
186 1i1q_B Anthranilate synthase c 82.1 5.4 0.00018 26.1 6.5 51 28-78 2-55 (192)
187 1o4u_A Type II quinolic acid p 81.8 6.1 0.00021 28.0 6.9 55 86-142 179-234 (285)
188 1qpo_A Quinolinate acid phosph 81.6 7.3 0.00025 27.6 7.2 54 87-142 182-235 (284)
189 2tps_A Protein (thiamin phosph 81.6 9.4 0.00032 25.4 9.3 69 55-126 122-198 (227)
190 1izc_A Macrophomate synthase i 81.6 13 0.00044 27.0 11.0 85 56-142 50-139 (339)
191 1vc4_A Indole-3-glycerol phosp 81.5 6.5 0.00022 27.2 6.9 84 40-126 141-234 (254)
192 1x1o_A Nicotinate-nucleotide p 81.4 7.6 0.00026 27.5 7.3 55 87-142 183-237 (286)
193 2r6o_A Putative diguanylate cy 81.1 6.8 0.00023 27.6 7.0 101 40-142 166-279 (294)
194 1h1y_A D-ribulose-5-phosphate 81.0 10 0.00035 25.5 9.9 70 71-141 138-219 (228)
195 4hjf_A Ggdef family protein; s 80.9 2 6.9E-05 31.1 4.3 102 39-142 214-328 (340)
196 2ift_A Putative methylase HI07 80.6 7.3 0.00025 25.5 6.7 80 27-107 77-164 (201)
197 1y0e_A Putative N-acetylmannos 80.6 10 0.00035 25.2 10.2 75 50-127 119-203 (223)
198 3gnn_A Nicotinate-nucleotide p 79.9 6.6 0.00022 28.0 6.5 69 72-142 180-250 (298)
199 3ovp_A Ribulose-phosphate 3-ep 79.9 6.6 0.00023 26.7 6.4 84 56-141 16-107 (228)
200 3tqv_A Nicotinate-nucleotide p 79.3 14 0.00049 26.2 8.6 67 53-126 202-268 (287)
201 1yxy_A Putative N-acetylmannos 79.3 12 0.0004 25.2 9.1 73 50-126 133-213 (234)
202 4e38_A Keto-hydroxyglutarate-a 79.3 13 0.00043 25.5 9.5 78 43-126 120-200 (232)
203 3tfw_A Putative O-methyltransf 78.8 13 0.00043 25.2 10.2 79 26-107 88-170 (248)
204 3jr2_A Hexulose-6-phosphate sy 78.7 2.9 9.8E-05 28.1 4.3 75 60-138 47-128 (218)
205 3mwd_B ATP-citrate synthase; A 78.7 16 0.00056 26.4 12.9 113 28-144 170-316 (334)
206 1jcn_A Inosine monophosphate d 78.4 16 0.00055 27.9 8.8 66 60-127 257-323 (514)
207 2agk_A 1-(5-phosphoribosyl)-5- 78.3 14 0.00048 25.6 7.8 80 61-141 162-258 (260)
208 2xxa_A Signal recognition part 78.3 17 0.00058 27.3 8.7 17 62-79 175-191 (433)
209 3ffs_A Inosine-5-monophosphate 77.5 10 0.00035 28.2 7.2 65 60-127 146-211 (400)
210 1tqj_A Ribulose-phosphate 3-ep 77.2 14 0.00049 25.0 7.8 83 57-142 17-108 (230)
211 2b7n_A Probable nicotinate-nuc 77.1 11 0.00039 26.3 7.1 81 41-126 171-255 (273)
212 2z6i_A Trans-2-enoyl-ACP reduc 76.9 18 0.00061 25.9 11.5 79 45-126 105-189 (332)
213 2p10_A MLL9387 protein; putati 76.8 17 0.00059 25.7 10.7 81 45-127 158-258 (286)
214 1rpx_A Protein (ribulose-phosp 76.6 7.3 0.00025 26.2 5.8 114 29-145 95-229 (230)
215 3snr_A Extracellular ligand-bi 76.3 17 0.00059 25.4 8.2 85 28-115 137-232 (362)
216 1rd5_A Tryptophan synthase alp 76.2 5.9 0.0002 27.3 5.4 53 86-140 82-137 (262)
217 3sy8_A ROCR; TIM barrel phosph 76.1 5.1 0.00018 29.4 5.3 98 43-141 282-391 (400)
218 3bo9_A Putative nitroalkan dio 76.0 19 0.00065 25.8 12.7 81 43-126 117-203 (326)
219 4a29_A Engineered retro-aldol 75.8 18 0.0006 25.3 13.1 90 36-127 139-232 (258)
220 3f4w_A Putative hexulose 6 pho 75.8 10 0.00034 25.0 6.3 43 86-128 40-84 (211)
221 2oo3_A Protein involved in cat 75.8 15 0.00052 26.0 7.4 69 27-95 114-184 (283)
222 1o4u_A Type II quinolic acid p 75.6 7.4 0.00025 27.6 5.8 94 29-126 166-266 (285)
223 1vrd_A Inosine-5'-monophosphat 75.5 22 0.00074 26.9 8.8 66 60-127 239-305 (494)
224 4ef8_A Dihydroorotate dehydrog 75.5 7 0.00024 28.6 5.8 56 87-142 265-327 (354)
225 3hvb_A Protein FIMX; EAL phosp 75.4 7.2 0.00025 28.9 6.0 93 40-134 325-429 (437)
226 1h5y_A HISF; histidine biosynt 75.2 16 0.00054 24.5 9.6 82 58-141 155-246 (253)
227 3bw2_A 2-nitropropane dioxygen 75.1 21 0.00073 25.9 12.5 78 46-126 141-235 (369)
228 3ajx_A 3-hexulose-6-phosphate 75.0 12 0.0004 24.6 6.4 101 37-141 90-204 (207)
229 1t0b_A THUA-like protein; treh 74.8 10 0.00035 26.2 6.2 80 25-108 6-106 (252)
230 2j9r_A Thymidine kinase; TK1, 74.5 6 0.0002 26.8 4.8 35 71-107 101-136 (214)
231 2lnd_A De novo designed protei 74.2 9.7 0.00033 21.6 8.6 46 99-144 51-100 (112)
232 1thf_D HISF protein; thermophI 74.1 18 0.0006 24.5 10.9 81 59-141 153-243 (253)
233 3kts_A Glycerol uptake operon 73.8 9.6 0.00033 25.4 5.6 63 60-128 117-179 (192)
234 2iw1_A Lipopolysaccharide core 73.6 21 0.00071 25.1 10.7 105 27-144 229-336 (374)
235 3l0g_A Nicotinate-nucleotide p 73.2 22 0.00077 25.3 7.9 91 29-126 181-277 (300)
236 3td9_A Branched chain amino ac 73.2 22 0.00074 25.1 10.7 86 27-115 150-246 (366)
237 2jjm_A Glycosyl transferase, g 73.2 19 0.00064 25.8 7.7 65 72-144 285-349 (394)
238 2fpo_A Methylase YHHF; structu 73.2 16 0.00056 23.7 8.4 66 28-95 79-146 (202)
239 2jbm_A Nicotinate-nucleotide p 72.9 23 0.00077 25.2 7.9 69 53-126 201-270 (299)
240 3ec7_A Putative dehydrogenase; 72.8 24 0.00081 25.4 8.1 105 25-140 22-132 (357)
241 3hv8_A Protein FIMX; EAL phosp 72.1 5.9 0.0002 27.2 4.6 92 41-134 157-260 (268)
242 1rd5_A Tryptophan synthase alp 72.0 21 0.00072 24.5 7.8 41 86-127 189-229 (262)
243 3gjy_A Spermidine synthase; AP 72.0 16 0.00054 26.3 6.8 77 26-103 113-197 (317)
244 1p9l_A Dihydrodipicolinate red 72.0 21 0.00073 24.5 12.2 82 27-114 1-84 (245)
245 3lkb_A Probable branched-chain 71.6 25 0.00085 25.1 9.5 86 28-116 145-241 (392)
246 1ujp_A Tryptophan synthase alp 71.4 23 0.00079 24.7 7.7 38 87-127 191-228 (271)
247 3llv_A Exopolyphosphatase-rela 71.2 14 0.0005 22.3 10.3 95 28-127 8-122 (141)
248 3hut_A Putative branched-chain 71.0 24 0.00083 24.7 8.4 86 28-116 141-237 (358)
249 2c6q_A GMP reductase 2; TIM ba 71.0 18 0.00061 26.3 7.0 56 71-127 132-188 (351)
250 3o07_A Pyridoxine biosynthesis 70.8 13 0.00044 26.4 5.9 57 85-142 185-248 (291)
251 3ek2_A Enoyl-(acyl-carrier-pro 70.8 21 0.00073 24.0 7.4 80 25-106 13-99 (271)
252 3ovp_A Ribulose-phosphate 3-ep 70.7 22 0.00074 24.1 8.2 69 72-141 135-215 (228)
253 1z0s_A Probable inorganic poly 70.4 6.6 0.00023 27.7 4.5 71 26-107 29-99 (278)
254 4eyg_A Twin-arginine transloca 70.2 25 0.00087 24.7 8.9 83 28-113 141-237 (368)
255 3vk5_A MOEO5; TIM barrel, tran 69.9 24 0.00081 25.1 7.1 56 72-128 200-256 (286)
256 3gnn_A Nicotinate-nucleotide p 69.9 27 0.00093 24.9 9.9 66 53-125 213-278 (298)
257 1lnq_A MTHK channels, potassiu 69.6 27 0.00092 24.7 9.1 53 71-126 177-229 (336)
258 1sxj_E Activator 1 40 kDa subu 69.5 13 0.00045 26.3 6.1 70 71-143 134-206 (354)
259 3cvo_A Methyltransferase-like 69.1 23 0.00077 23.6 10.2 112 27-143 52-200 (202)
260 3u81_A Catechol O-methyltransf 69.1 21 0.00073 23.4 6.7 57 26-82 83-145 (221)
261 3khj_A Inosine-5-monophosphate 69.1 31 0.001 25.2 8.1 65 60-127 107-172 (361)
262 2o3a_A UPF0106 protein AF_0751 68.8 21 0.00072 23.2 6.1 62 27-95 34-97 (178)
263 3re1_A Uroporphyrinogen-III sy 68.7 8.4 0.00029 26.6 4.7 109 25-143 140-262 (269)
264 3axs_A Probable N(2),N(2)-dime 68.5 33 0.0011 25.3 9.4 77 27-109 78-160 (392)
265 3h2s_A Putative NADH-flavin re 68.5 15 0.0005 24.0 5.8 29 27-55 1-29 (224)
266 2w6r_A Imidazole glycerol phos 68.2 25 0.00087 23.9 8.5 68 58-127 31-102 (266)
267 2qzs_A Glycogen synthase; glyc 68.0 34 0.0011 25.2 10.5 106 27-143 322-439 (485)
268 1q6o_A Humps, 3-keto-L-gulonat 67.9 7.9 0.00027 25.8 4.4 14 116-129 75-88 (216)
269 4f3h_A Fimxeal, putative uncha 67.8 25 0.00086 23.7 7.7 89 41-131 147-248 (250)
270 3gvc_A Oxidoreductase, probabl 67.6 17 0.00058 25.1 6.2 80 25-105 28-109 (277)
271 3okp_A GDP-mannose-dependent a 67.4 30 0.001 24.4 9.7 76 58-144 262-343 (394)
272 1qop_A Tryptophan synthase alp 66.8 29 0.00098 24.0 7.4 40 87-127 194-233 (268)
273 3p9n_A Possible methyltransfer 66.6 22 0.00076 22.6 9.9 79 27-106 68-153 (189)
274 3l4e_A Uncharacterized peptida 66.4 26 0.00088 23.3 9.9 63 26-95 27-99 (206)
275 2e6f_A Dihydroorotate dehydrog 66.1 19 0.00064 25.4 6.2 56 87-142 232-294 (314)
276 1gox_A (S)-2-hydroxy-acid oxid 66.1 36 0.0012 24.8 10.8 90 40-131 215-313 (370)
277 2bfw_A GLGA glycogen synthase; 66.1 22 0.00077 22.5 12.3 106 26-144 70-179 (200)
278 4h08_A Putative hydrolase; GDS 66.0 23 0.00079 22.6 10.0 79 27-107 21-119 (200)
279 2vpt_A Lipolytic enzyme; ester 65.8 14 0.00049 24.1 5.3 85 25-109 4-130 (215)
280 3sz8_A 2-dehydro-3-deoxyphosph 65.6 31 0.0011 24.4 7.1 67 59-125 150-238 (285)
281 3p9z_A Uroporphyrinogen III co 65.6 27 0.00094 23.3 8.1 107 26-143 110-225 (229)
282 2f6u_A GGGPS, (S)-3-O-geranylg 65.6 8.2 0.00028 26.5 4.1 60 60-128 23-84 (234)
283 1sui_A Caffeoyl-COA O-methyltr 65.5 29 0.00098 23.5 11.2 75 26-103 104-187 (247)
284 1rzu_A Glycogen synthase 1; gl 65.4 38 0.0013 24.9 11.2 106 27-143 321-438 (485)
285 1h7n_A 5-aminolaevulinic acid 65.3 16 0.00055 26.5 5.6 46 58-106 241-288 (342)
286 1qv9_A F420-dependent methylen 65.3 24 0.00082 24.5 6.2 58 67-127 61-118 (283)
287 3ffs_A Inosine-5-monophosphate 65.1 40 0.0014 25.0 12.2 97 28-126 158-273 (400)
288 1ka9_F Imidazole glycerol phos 65.1 29 0.00099 23.4 9.5 69 57-127 31-103 (252)
289 4dyv_A Short-chain dehydrogena 64.9 21 0.00071 24.6 6.2 81 25-106 27-109 (272)
290 1qap_A Quinolinic acid phospho 64.8 32 0.0011 24.4 7.1 53 87-141 196-248 (296)
291 3sg0_A Extracellular ligand-bi 64.7 34 0.0012 24.1 8.1 86 28-116 161-257 (386)
292 1pv8_A Delta-aminolevulinic ac 64.7 15 0.00051 26.5 5.3 47 57-106 229-277 (330)
293 3sc6_A DTDP-4-dehydrorhamnose 64.7 30 0.001 23.5 7.5 54 27-81 6-66 (287)
294 4ew6_A D-galactose-1-dehydroge 64.7 35 0.0012 24.2 9.0 112 11-140 10-126 (330)
295 3c3y_A Pfomt, O-methyltransfer 64.6 29 0.00098 23.2 9.8 77 27-106 96-180 (237)
296 3tha_A Tryptophan synthase alp 64.6 21 0.00072 24.8 6.0 48 89-136 78-131 (252)
297 2l69_A Rossmann 2X3 fold prote 64.5 19 0.00064 21.0 7.0 38 28-65 79-116 (134)
298 1vzw_A Phosphoribosyl isomeras 64.5 29 0.001 23.3 10.6 80 58-139 147-239 (244)
299 3u3x_A Oxidoreductase; structu 64.3 30 0.001 24.9 7.1 104 25-141 25-134 (361)
300 4gx0_A TRKA domain protein; me 64.0 47 0.0016 25.5 10.1 96 26-127 127-243 (565)
301 1vl8_A Gluconate 5-dehydrogena 64.0 31 0.0011 23.5 8.2 80 25-105 20-105 (267)
302 3lop_A Substrate binding perip 63.9 26 0.00088 24.7 6.7 76 28-106 143-229 (364)
303 3ipc_A ABC transporter, substr 63.9 35 0.0012 23.9 7.7 85 28-115 140-235 (356)
304 2pyy_A Ionotropic glutamate re 63.7 26 0.00088 22.4 7.4 50 24-79 110-159 (228)
305 3e8x_A Putative NAD-dependent 63.6 14 0.00048 24.5 5.0 33 25-57 20-52 (236)
306 1eep_A Inosine 5'-monophosphat 63.3 42 0.0014 24.7 8.4 56 71-127 165-221 (404)
307 2f6u_A GGGPS, (S)-3-O-geranylg 63.2 19 0.00066 24.6 5.5 55 73-129 165-219 (234)
308 2yy8_A ATRM56, UPF0106 protein 62.7 22 0.00075 23.6 5.4 81 28-114 32-117 (201)
309 3oix_A Putative dihydroorotate 62.6 16 0.00054 26.6 5.3 39 87-125 262-301 (345)
310 3exr_A RMPD (hexulose-6-phosph 62.5 7.9 0.00027 26.2 3.5 23 61-84 47-70 (221)
311 2f9f_A First mannosyl transfer 62.5 26 0.00088 22.0 10.2 105 27-144 51-161 (177)
312 3iwp_A Copper homeostasis prot 62.5 39 0.0013 24.0 8.2 88 50-140 39-149 (287)
313 1ka9_F Imidazole glycerol phos 62.0 33 0.0011 23.1 10.5 80 60-141 155-244 (252)
314 3h5l_A Putative branched-chain 61.6 43 0.0015 24.2 8.8 85 28-114 166-261 (419)
315 2iuy_A Avigt4, glycosyltransfe 61.5 38 0.0013 23.6 8.5 104 28-143 190-306 (342)
316 3ppi_A 3-hydroxyacyl-COA dehyd 61.0 35 0.0012 23.3 6.8 79 25-105 29-109 (281)
317 3fro_A GLGA glycogen synthase; 60.6 43 0.0015 23.9 12.2 106 26-144 285-394 (439)
318 3n74_A 3-ketoacyl-(acyl-carrie 60.3 36 0.0012 22.9 7.7 80 26-106 9-90 (261)
319 3ctl_A D-allulose-6-phosphate 60.1 37 0.0013 23.0 7.5 81 57-141 13-101 (231)
320 1ep3_A Dihydroorotate dehydrog 60.1 26 0.00088 24.5 6.0 55 87-142 230-290 (311)
321 3tdn_A FLR symmetric alpha-bet 59.5 38 0.0013 22.9 8.1 67 58-126 36-106 (247)
322 1i4n_A Indole-3-glycerol phosp 59.4 41 0.0014 23.2 10.3 99 37-137 137-244 (251)
323 1tqj_A Ribulose-phosphate 3-ep 59.4 38 0.0013 22.8 6.8 83 41-126 103-199 (230)
324 2b8t_A Thymidine kinase; deoxy 59.3 5.6 0.00019 27.0 2.3 51 55-107 70-124 (223)
325 2avd_A Catechol-O-methyltransf 59.3 34 0.0012 22.3 10.0 77 26-105 94-177 (229)
326 1q6o_A Humps, 3-keto-L-gulonat 59.3 36 0.0012 22.5 7.2 70 71-141 130-209 (216)
327 2esr_A Methyltransferase; stru 59.2 30 0.001 21.6 5.8 66 27-94 55-123 (177)
328 3llv_A Exopolyphosphatase-rela 59.1 27 0.00091 21.0 6.0 20 60-80 19-38 (141)
329 4eso_A Putative oxidoreductase 59.0 38 0.0013 22.8 7.7 81 25-105 7-88 (255)
330 3tr6_A O-methyltransferase; ce 58.5 35 0.0012 22.2 9.9 78 26-106 89-173 (225)
331 1viz_A PCRB protein homolog; s 58.4 10 0.00034 26.1 3.5 69 57-134 20-90 (240)
332 3etn_A Putative phosphosugar i 58.2 26 0.0009 23.3 5.6 85 28-113 61-149 (220)
333 4ibo_A Gluconate dehydrogenase 58.2 41 0.0014 23.0 8.1 81 25-106 25-110 (271)
334 1jr2_A Uroporphyrinogen-III sy 58.1 43 0.0015 23.1 7.9 109 25-141 20-152 (286)
335 4fo4_A Inosine 5'-monophosphat 58.0 52 0.0018 24.1 14.4 97 28-126 122-238 (366)
336 1vli_A Spore coat polysacchari 58.0 31 0.0011 25.5 6.2 64 59-123 173-243 (385)
337 2w6r_A Imidazole glycerol phos 57.9 41 0.0014 22.8 9.3 79 59-139 158-246 (266)
338 1geq_A Tryptophan synthase alp 57.4 41 0.0014 22.6 9.5 40 87-127 180-219 (248)
339 2i7c_A Spermidine synthase; tr 57.3 45 0.0015 23.1 8.5 78 26-106 102-191 (283)
340 2lci_A Protein OR36; structura 57.3 26 0.0009 20.4 10.2 110 28-142 4-120 (134)
341 3cu2_A Ribulose-5-phosphate 3- 57.1 18 0.00063 24.7 4.6 82 58-142 27-113 (237)
342 3k31_A Enoyl-(acyl-carrier-pro 56.9 46 0.0016 23.0 7.7 98 8-107 12-116 (296)
343 2yw3_A 4-hydroxy-2-oxoglutarat 56.9 25 0.00086 23.3 5.2 59 72-136 39-97 (207)
344 3jy6_A Transcriptional regulat 56.9 42 0.0014 22.6 9.6 60 40-106 27-92 (276)
345 1me8_A Inosine-5'-monophosphat 56.8 45 0.0015 25.4 7.2 68 57-126 241-310 (503)
346 3r8r_A Transaldolase; pentose 56.8 42 0.0014 22.6 7.5 82 44-127 96-185 (212)
347 3b0p_A TRNA-dihydrouridine syn 56.7 53 0.0018 23.7 8.1 39 87-126 185-223 (350)
348 3grp_A 3-oxoacyl-(acyl carrier 56.6 44 0.0015 22.8 7.5 80 26-106 27-108 (266)
349 2px2_A Genome polyprotein [con 56.5 24 0.00081 24.8 5.1 56 70-139 138-195 (269)
350 2y88_A Phosphoribosyl isomeras 56.5 42 0.0014 22.4 8.5 78 59-138 151-241 (244)
351 1jr3_D DNA polymerase III, del 56.3 50 0.0017 23.3 8.3 116 28-143 20-155 (343)
352 2r60_A Glycosyl transferase, g 56.3 58 0.002 24.1 10.8 95 39-144 321-423 (499)
353 1qo2_A Molecule: N-((5-phospho 56.2 42 0.0015 22.5 8.2 80 58-139 145-240 (241)
354 1zh8_A Oxidoreductase; TM0312, 56.2 51 0.0018 23.4 9.7 108 21-141 13-128 (340)
355 2px0_A Flagellar biosynthesis 56.1 49 0.0017 23.2 7.9 10 70-79 181-190 (296)
356 1xx6_A Thymidine kinase; NESG, 56.0 9.2 0.00032 25.2 2.9 77 26-106 36-115 (191)
357 3k9c_A Transcriptional regulat 56.0 45 0.0015 22.7 7.6 61 40-107 31-96 (289)
358 1qap_A Quinolinic acid phospho 55.8 52 0.0018 23.3 10.5 91 28-126 181-278 (296)
359 1wl8_A GMP synthase [glutamine 55.8 18 0.00061 23.4 4.3 77 28-107 2-80 (189)
360 4htf_A S-adenosylmethionine-de 55.7 27 0.00092 23.8 5.4 78 26-105 90-172 (285)
361 4es6_A Uroporphyrinogen-III sy 55.6 45 0.0015 22.5 8.6 107 25-141 132-252 (254)
362 1njg_A DNA polymerase III subu 55.5 39 0.0013 21.8 6.7 71 71-143 126-198 (250)
363 1vl0_A DTDP-4-dehydrorhamnose 55.4 46 0.0016 22.6 8.6 58 23-81 9-73 (292)
364 1lst_A Lysine, arginine, ornit 55.2 39 0.0013 21.8 6.7 52 26-79 111-162 (239)
365 3tjx_A Dihydroorotate dehydrog 55.1 39 0.0013 24.4 6.3 57 87-143 265-328 (354)
366 3zv4_A CIS-2,3-dihydrobiphenyl 55.1 48 0.0016 22.7 8.1 79 26-105 5-85 (281)
367 3i09_A Periplasmic branched-ch 55.1 53 0.0018 23.2 8.4 71 28-101 142-223 (375)
368 3w01_A Heptaprenylglyceryl pho 54.9 16 0.00053 25.2 3.9 59 60-127 26-86 (235)
369 3e2i_A Thymidine kinase; Zn-bi 54.8 11 0.00039 25.6 3.2 76 28-107 58-136 (219)
370 2gk3_A Putative cytoplasmic pr 54.8 23 0.00079 24.3 4.9 65 40-109 43-128 (256)
371 2aef_A Calcium-gated potassium 54.7 44 0.0015 22.1 9.1 53 71-126 71-123 (234)
372 2xhz_A KDSD, YRBH, arabinose 5 54.3 38 0.0013 21.4 7.5 94 28-129 51-148 (183)
373 2qfm_A Spermine synthase; sper 54.1 62 0.0021 23.7 9.6 67 27-93 212-296 (364)
374 3dm5_A SRP54, signal recogniti 53.8 69 0.0024 24.1 10.4 19 61-80 173-191 (443)
375 4e3z_A Putative oxidoreductase 53.7 49 0.0017 22.4 8.1 80 26-106 26-111 (272)
376 3zwt_A Dihydroorotate dehydrog 53.7 39 0.0013 24.7 6.1 40 87-126 285-325 (367)
377 4dzz_A Plasmid partitioning pr 53.5 20 0.00067 23.0 4.2 51 26-80 30-84 (206)
378 2b7n_A Probable nicotinate-nuc 53.4 54 0.0019 22.8 7.2 54 87-142 169-223 (273)
379 3st7_A Capsular polysaccharide 53.4 57 0.002 23.1 9.9 79 27-108 1-95 (369)
380 1jub_A Dihydroorotate dehydrog 53.3 40 0.0014 23.6 6.1 39 87-125 229-268 (311)
381 3r3h_A O-methyltransferase, SA 53.2 28 0.00095 23.5 5.1 77 26-105 85-168 (242)
382 3orh_A Guanidinoacetate N-meth 53.1 35 0.0012 22.8 5.6 54 27-81 84-138 (236)
383 3qk7_A Transcriptional regulat 53.1 51 0.0017 22.4 8.7 61 40-106 30-95 (294)
384 3rwb_A TPLDH, pyridoxal 4-dehy 53.1 48 0.0016 22.2 7.8 81 25-106 5-87 (247)
385 3f4k_A Putative methyltransfer 53.0 23 0.00078 23.6 4.6 75 28-105 71-149 (257)
386 2wqp_A Polysialic acid capsule 52.9 40 0.0014 24.6 6.0 62 61-123 165-231 (349)
387 3fwz_A Inner membrane protein 52.9 36 0.0012 20.6 6.4 79 26-113 7-85 (140)
388 3iwt_A 178AA long hypothetical 52.6 43 0.0015 21.4 6.5 45 37-81 40-91 (178)
389 4iiu_A 3-oxoacyl-[acyl-carrier 52.5 51 0.0017 22.3 7.4 80 26-106 26-111 (267)
390 3nav_A Tryptophan synthase alp 52.5 57 0.0019 22.8 7.2 98 29-128 129-237 (271)
391 3l6u_A ABC-type sugar transpor 52.4 51 0.0017 22.2 8.1 65 39-107 27-97 (293)
392 2b2c_A Spermidine synthase; be 52.2 60 0.0021 23.0 8.1 77 26-105 132-220 (314)
393 1es9_A PAF-AH, platelet-activa 52.0 47 0.0016 21.7 8.8 81 26-108 38-139 (232)
394 3duw_A OMT, O-methyltransferas 52.0 46 0.0016 21.6 11.3 79 26-107 83-167 (223)
395 3ezl_A Acetoacetyl-COA reducta 52.0 50 0.0017 22.0 8.1 81 25-106 12-98 (256)
396 3gdg_A Probable NADP-dependent 51.9 31 0.0011 23.2 5.2 81 26-106 20-108 (267)
397 1xg5_A ARPG836; short chain de 51.9 53 0.0018 22.3 9.3 80 26-105 32-117 (279)
398 3usb_A Inosine-5'-monophosphat 51.9 78 0.0027 24.2 13.5 98 28-127 270-387 (511)
399 1xj5_A Spermidine synthase 1; 51.8 63 0.0022 23.1 7.2 78 26-105 144-233 (334)
400 3tjr_A Short chain dehydrogena 51.7 57 0.002 22.6 9.7 81 25-106 30-115 (301)
401 3kvo_A Hydroxysteroid dehydrog 51.6 63 0.0022 23.1 9.4 81 25-106 44-136 (346)
402 3gk3_A Acetoacetyl-COA reducta 51.5 53 0.0018 22.2 7.7 81 25-106 24-110 (269)
403 2khz_A C-MYC-responsive protei 51.5 44 0.0015 21.3 7.9 112 25-144 10-150 (165)
404 3ntv_A MW1564 protein; rossman 51.1 50 0.0017 21.8 7.9 75 26-105 95-174 (232)
405 3h2z_A Mannitol-1-phosphate 5- 51.1 35 0.0012 25.2 5.6 18 27-44 25-42 (382)
406 3lkz_A Non-structural protein 51.1 29 0.001 24.9 4.9 11 70-80 159-169 (321)
407 3egc_A Putative ribose operon 51.0 54 0.0019 22.1 7.0 39 39-78 27-71 (291)
408 3i6v_A Periplasmic His/Glu/Gln 51.0 47 0.0016 21.6 5.9 48 25-79 106-153 (232)
409 2nv1_A Pyridoxal biosynthesis 50.9 61 0.0021 22.7 6.9 40 86-126 195-236 (305)
410 1eep_A Inosine 5'-monophosphat 50.9 71 0.0024 23.4 12.5 75 50-126 194-283 (404)
411 3fxa_A SIS domain protein; str 50.9 31 0.0011 22.3 4.9 95 28-130 47-145 (201)
412 3kke_A LACI family transcripti 50.8 57 0.0019 22.3 8.5 64 38-107 33-102 (303)
413 3k4h_A Putative transcriptiona 50.7 54 0.0019 22.1 8.1 16 40-55 33-48 (292)
414 1iy9_A Spermidine synthase; ro 50.5 59 0.002 22.4 6.9 78 26-106 99-188 (275)
415 2o23_A HADH2 protein; HSD17B10 50.4 51 0.0017 22.0 6.1 76 26-105 12-92 (265)
416 2nli_A Lactate oxidase; flavoe 50.3 71 0.0024 23.3 10.5 89 40-130 219-316 (368)
417 3fdx_A Putative filament prote 50.2 34 0.0011 20.3 4.7 64 40-105 69-142 (143)
418 3ew7_A LMO0794 protein; Q8Y8U8 50.2 32 0.0011 22.2 4.9 29 27-55 1-29 (221)
419 3cbg_A O-methyltransferase; cy 50.2 53 0.0018 21.7 9.7 77 26-105 97-180 (232)
420 2bas_A YKUI protein; EAL domai 50.1 54 0.0018 24.3 6.5 94 37-132 157-263 (431)
421 4gj1_A 1-(5-phosphoribosyl)-5- 50.1 57 0.002 22.2 9.1 80 59-139 153-241 (243)
422 1f76_A Dihydroorotate dehydrog 50.0 31 0.0011 24.6 5.1 39 87-125 276-315 (336)
423 3rc1_A Sugar 3-ketoreductase; 50.0 67 0.0023 22.9 9.1 101 25-139 26-133 (350)
424 3i65_A Dihydroorotate dehydrog 49.9 26 0.0009 26.2 4.8 56 87-142 332-395 (415)
425 4had_A Probable oxidoreductase 49.9 50 0.0017 23.4 6.2 95 25-132 22-121 (350)
426 2i2c_A Probable inorganic poly 49.9 61 0.0021 22.4 8.5 73 40-144 18-92 (272)
427 2pzm_A Putative nucleotide sug 49.8 30 0.001 24.2 5.0 43 13-55 7-49 (330)
428 3r75_A Anthranilate/para-amino 49.7 59 0.002 25.8 6.9 49 25-78 445-493 (645)
429 4e6p_A Probable sorbitol dehyd 49.7 56 0.0019 21.9 8.2 80 26-106 8-89 (259)
430 2yxd_A Probable cobalt-precorr 49.7 43 0.0015 20.6 11.4 73 26-106 57-131 (183)
431 1h1y_A D-ribulose-5-phosphate 49.4 56 0.0019 21.8 7.5 68 58-128 20-94 (228)
432 2nzl_A Hydroxyacid oxidase 1; 49.2 77 0.0026 23.4 9.0 76 55-132 259-341 (392)
433 3s1x_A Probable transaldolase; 49.1 60 0.002 22.1 8.3 80 44-129 98-189 (223)
434 3evz_A Methyltransferase; NYSG 49.0 47 0.0016 21.6 5.7 51 27-79 80-131 (230)
435 3i1j_A Oxidoreductase, short c 49.0 55 0.0019 21.6 8.2 82 25-106 13-101 (247)
436 3hm2_A Precorrin-6Y C5,15-meth 49.0 45 0.0015 20.6 7.0 73 26-104 49-125 (178)
437 4gmf_A Yersiniabactin biosynth 48.8 56 0.0019 23.8 6.3 32 111-142 84-115 (372)
438 4adt_A Pyridoxine biosynthetic 48.7 69 0.0024 22.7 11.1 54 87-141 196-256 (297)
439 2chg_A Replication factor C sm 48.3 50 0.0017 20.9 6.6 71 71-143 102-174 (226)
440 4dqx_A Probable oxidoreductase 48.3 63 0.0022 22.1 7.8 80 26-106 27-108 (277)
441 3c48_A Predicted glycosyltrans 48.2 74 0.0025 22.9 11.1 107 27-144 277-390 (438)
442 1y81_A Conserved hypothetical 48.2 31 0.0011 21.2 4.3 105 25-134 13-127 (138)
443 2pju_A Propionate catabolism o 48.1 61 0.0021 21.9 11.1 116 28-143 14-151 (225)
444 1fy2_A Aspartyl dipeptidase; s 48.1 60 0.002 21.8 6.9 63 26-95 31-99 (229)
445 2nvw_A Galactose/lactose metab 47.9 87 0.003 23.6 7.8 105 25-140 38-159 (479)
446 3sx2_A Putative 3-ketoacyl-(ac 47.9 62 0.0021 21.9 8.2 81 25-106 12-109 (278)
447 1h5y_A HISF; histidine biosynt 47.7 58 0.002 21.6 10.2 69 56-126 32-104 (253)
448 4g65_A TRK system potassium up 47.7 87 0.003 23.5 7.6 74 26-106 26-102 (461)
449 3eaf_A ABC transporter, substr 47.7 73 0.0025 22.7 8.4 85 28-115 143-241 (391)
450 3sho_A Transcriptional regulat 47.5 51 0.0018 20.8 10.0 83 28-113 41-128 (187)
451 3dii_A Short-chain dehydrogena 47.4 60 0.0021 21.6 9.1 80 27-107 3-83 (247)
452 2gpy_A O-methyltransferase; st 47.4 57 0.002 21.4 7.9 78 26-106 78-159 (233)
453 2ffh_A Protein (FFH); SRP54, s 47.3 86 0.003 23.4 11.5 52 27-79 127-188 (425)
454 4gud_A Imidazole glycerol phos 47.3 30 0.001 22.6 4.4 43 28-77 4-46 (211)
455 3nrc_A Enoyl-[acyl-carrier-pro 47.0 65 0.0022 21.9 8.0 81 26-107 26-111 (280)
456 3tpc_A Short chain alcohol deh 47.0 60 0.0021 21.7 6.0 80 26-106 7-88 (257)
457 3iwp_A Copper homeostasis prot 46.4 76 0.0026 22.5 7.1 89 37-126 139-236 (287)
458 3rot_A ABC sugar transporter, 46.2 67 0.0023 21.8 8.4 66 39-108 22-95 (297)
459 1zfj_A Inosine monophosphate d 46.1 92 0.0032 23.4 7.6 65 60-127 236-301 (491)
460 3m2t_A Probable dehydrogenase; 46.1 79 0.0027 22.6 7.9 103 26-140 5-113 (359)
461 3l6e_A Oxidoreductase, short-c 45.9 63 0.0022 21.4 7.7 79 27-106 4-84 (235)
462 1pii_A N-(5'phosphoribosyl)ant 45.9 95 0.0033 23.5 11.3 97 38-137 145-250 (452)
463 1ws6_A Methyltransferase; stru 45.8 49 0.0017 20.2 7.5 66 28-94 65-132 (171)
464 3m1a_A Putative dehydrogenase; 45.8 60 0.002 22.0 5.9 78 27-105 6-85 (281)
465 3l9w_A Glutathione-regulated p 45.7 89 0.003 23.1 8.7 99 26-134 4-107 (413)
466 1jvn_A Glutamine, bifunctional 45.6 1E+02 0.0035 23.8 9.5 80 60-141 455-545 (555)
467 3q58_A N-acetylmannosamine-6-p 45.4 68 0.0023 21.6 8.5 63 58-126 90-154 (229)
468 3igs_A N-acetylmannosamine-6-p 45.4 68 0.0023 21.7 8.4 63 58-126 90-154 (232)
469 3ou2_A SAM-dependent methyltra 45.4 57 0.002 20.8 6.6 38 70-107 106-147 (218)
470 3e05_A Precorrin-6Y C5,15-meth 45.3 51 0.0018 21.1 5.3 74 27-105 65-141 (204)
471 1x1o_A Nicotinate-nucleotide p 45.2 78 0.0027 22.3 11.5 91 28-126 168-266 (286)
472 2orv_A Thymidine kinase; TP4A 45.1 38 0.0013 23.2 4.6 75 26-106 47-123 (234)
473 1jcn_A Inosine monophosphate d 45.1 1E+02 0.0034 23.5 11.4 88 40-130 285-390 (514)
474 1usg_A Leucine-specific bindin 45.0 74 0.0025 21.9 9.8 83 28-113 140-233 (346)
475 3o9z_A Lipopolysaccaride biosy 44.8 75 0.0026 22.3 6.4 44 97-140 70-117 (312)
476 4eg0_A D-alanine--D-alanine li 44.7 21 0.00073 25.0 3.5 54 26-80 13-74 (317)
477 2dul_A N(2),N(2)-dimethylguano 44.5 90 0.0031 22.8 10.6 76 27-108 72-165 (378)
478 3pfn_A NAD kinase; structural 44.5 91 0.0031 22.8 7.5 100 26-144 38-163 (365)
479 3r2g_A Inosine 5'-monophosphat 44.4 90 0.0031 22.8 13.9 72 50-126 141-226 (361)
480 2jbm_A Nicotinate-nucleotide p 44.4 82 0.0028 22.3 7.1 54 87-142 184-238 (299)
481 3ox4_A Alcohol dehydrogenase 2 44.3 65 0.0022 23.5 6.2 65 27-95 32-109 (383)
482 3o74_A Fructose transport syst 44.1 67 0.0023 21.3 7.6 10 44-53 26-35 (272)
483 2qkf_A 3-deoxy-D-manno-octulos 44.0 57 0.0019 22.9 5.5 68 58-125 144-233 (280)
484 3n0w_A ABC branched chain amin 43.7 83 0.0028 22.2 8.5 77 28-107 144-232 (379)
485 2fqx_A Membrane lipoprotein TM 43.5 81 0.0028 22.0 9.1 63 40-107 27-94 (318)
486 3e9m_A Oxidoreductase, GFO/IDH 43.5 67 0.0023 22.6 6.0 40 100-139 68-111 (330)
487 1vcf_A Isopentenyl-diphosphate 43.3 86 0.003 22.3 10.5 73 57-131 193-289 (332)
488 2duw_A Putative COA-binding pr 43.2 40 0.0014 20.8 4.3 93 27-122 14-118 (145)
489 3s5p_A Ribose 5-phosphate isom 43.1 66 0.0022 20.8 5.3 31 26-56 21-53 (166)
490 1sqg_A SUN protein, FMU protei 43.1 93 0.0032 22.9 6.9 53 27-80 271-324 (429)
491 3khj_A Inosine-5-monophosphate 43.1 94 0.0032 22.6 12.7 87 38-126 133-234 (361)
492 3ip3_A Oxidoreductase, putativ 43.0 35 0.0012 24.2 4.5 45 30-78 29-74 (337)
493 2rgy_A Transcriptional regulat 42.9 75 0.0026 21.4 8.0 16 40-55 28-43 (290)
494 1sxj_D Activator 1 41 kDa subu 42.8 51 0.0017 23.1 5.3 70 71-143 133-205 (353)
495 2h6r_A Triosephosphate isomera 42.8 72 0.0025 21.2 10.7 98 40-139 101-215 (219)
496 1iqp_A RFCS; clamp loader, ext 42.8 79 0.0027 21.7 6.9 71 71-143 110-182 (327)
497 2o6l_A UDP-glucuronosyltransfe 42.7 58 0.002 20.1 6.1 45 99-144 106-153 (170)
498 1f0k_A MURG, UDP-N-acetylgluco 42.7 83 0.0028 21.9 7.8 52 86-141 264-321 (364)
499 3ksu_A 3-oxoacyl-acyl carrier 42.6 76 0.0026 21.4 9.1 81 25-106 10-98 (262)
500 2v25_A Major cell-binding fact 42.4 68 0.0023 20.8 7.4 53 25-79 147-201 (259)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.97 E-value=4.1e-29 Score=161.18 Aligned_cols=120 Identities=28% Similarity=0.428 Sum_probs=111.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCc
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESK 101 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ 101 (145)
+.+||||+||++..+..++.+|+..||. +..++++.+|++.++. ..||+||+|++||+++|+++++.||+. .+++|
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~-~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ip 89 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK-GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLP 89 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCe
Confidence 5679999999999999999999999986 6689999999999988 579999999999999999999999974 46899
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
||++|+..+.+....+++.|+++|+.||+++++|..++++++++
T Consensus 90 vI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 90 VLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp EEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998763
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.94 E-value=7.9e-25 Score=138.40 Aligned_cols=117 Identities=25% Similarity=0.415 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ii~ 104 (145)
.+|+++||++..+..+...|+..||.+..+.+++++++.+.. ..||++|+|+.+|+++|+++++.+++. .+.+|+++
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~-~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~ 81 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE-FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIV 81 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT-BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEE
Confidence 479999999999999999999999999999999999999987 579999999999999999999999875 36799999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 82 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 82 LTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998875
No 3
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.93 E-value=2.7e-24 Score=138.31 Aligned_cols=118 Identities=22% Similarity=0.353 Sum_probs=110.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ii 103 (145)
+.+|||+||++..+..+...|+..||.+..+.+++++++.+.. ..||+||+|+.+|+.+|+++++.+++. .+.+|+|
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii 82 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK-NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPIL 82 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEE
Confidence 4689999999999999999999999999999999999999987 579999999999999999999999985 4578999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++|+..+......++..|+++|+.||++.++|..+++++++
T Consensus 83 ~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~ 123 (136)
T 3t6k_A 83 MLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILA 123 (136)
T ss_dssp EEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998874
No 4
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.93 E-value=3e-24 Score=135.29 Aligned_cols=117 Identities=26% Similarity=0.456 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|+++||++..+..+...|+..||.+..+.+++++++.+.. ..||++++|+.+|+.+|+++++.+++.. ..|++++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlii~D~~~p~~~g~~~~~~lr~~~-~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-LQPDLILLDIMLPNKDGVEVCREVRKKY-DMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-TCCSEEEEETTSTTTHHHHHHHHHHTTC-CSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CCCEEEEE
Confidence 489999999999999999999999999999999999999987 6799999999999999999999999754 78999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
+..+......+++.|+++|+.||++.++|..++++.+++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999998899999999999999999999999999988753
No 5
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.93 E-value=4.9e-24 Score=135.76 Aligned_cols=120 Identities=29% Similarity=0.395 Sum_probs=109.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCc
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESK 101 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ 101 (145)
.+++|+++||++..+..++..|+..||. +..+.++.+++..+.....||++|+|+.+|+++|+++++.+++. .+.+|
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 4578999999999999999999999985 88999999999988763469999999999999999999999984 46899
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+++|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998875
No 6
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.93 E-value=7.9e-27 Score=148.30 Aligned_cols=114 Identities=23% Similarity=0.264 Sum_probs=102.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
+++||||+||++..+..+...|+..||.++ .++++++|++.++. .+||+||+|++||+++|+++++.+++. ++|||
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~-~~~DlvllDi~mP~~~G~el~~~lr~~--~ipvI 83 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK-GQFDIAIIDVNLDGEPSYPVADILAER--NVPFI 83 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH-CCSSEEEECSSSSSCCSHHHHHHHHHT--CCSSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHcC--CCCEE
Confidence 467999999999999999999999999976 78999999999998 689999999999999999999999974 68999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++|++.+... +.++|+.+|+.||+++++|..+++++.+
T Consensus 84 ~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 84 FATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred EEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 9999876543 3467999999999999999999988765
No 7
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.93 E-value=6.5e-24 Score=138.47 Aligned_cols=127 Identities=28% Similarity=0.386 Sum_probs=112.3
Q ss_pred CCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhcC--CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 045936 18 ENPVSKNRPYFALVVDDDPMIRRIHSMILKSVG--FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA 95 (145)
Q Consensus 18 ~~~~~~~~~~~vlii~~~~~~~~~l~~~l~~~g--~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~ 95 (145)
..+......++|+|+||++..+..+...|+..| +.+..+.+.+++++.+.. ..||+||+|+.+++.+|+++++.+++
T Consensus 12 ~~~~~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-~~~dlii~D~~l~~~~g~~~~~~l~~ 90 (150)
T 4e7p_A 12 SGLVPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK-ESVDIAILDVEMPVKTGLEVLEWIRS 90 (150)
T ss_dssp --------CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT-SCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred cCCCCCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc-cCCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 334444556799999999999999999999887 778899999999999987 67999999999999999999999999
Q ss_pred hCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 96 MKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 96 ~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
..+.+|||++++..+......+++.|+++|+.||++.++|..+|++++++
T Consensus 91 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 91 EKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999998753
No 8
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.93 E-value=1.6e-23 Score=132.69 Aligned_cols=118 Identities=20% Similarity=0.340 Sum_probs=110.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+.+|+++||++..+..+...|...||.+..+.++++++..+.. ..||++++|+.+|+.+|+++++.+++..+.+|++++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD-VRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVI 81 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG-CCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 4589999999999999999999999999999999999999887 579999999999999999999999998889999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 82 TGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 999999899999999999999999999999999998764
No 9
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.92 E-value=1e-23 Score=134.12 Aligned_cols=119 Identities=16% Similarity=0.312 Sum_probs=105.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.+.+|+++||++..+..+...|+..||.+..+.+++++++.+.. ..||+||+|+.+++.+|+++++.+++..+.+|+++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLV 84 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT-CCCSEEEECCC-----CHHHHHHHHHTTCCCCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46799999999999999999999999999999999999999987 67999999999999999999999999989999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCC-CHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPL-TMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~-~~~~l~~~l~~~~~ 144 (145)
+|+..+......+++.|+++|+.||+ +.++|...++++++
T Consensus 85 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp EECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 99999999999999999999999999 89999999998875
No 10
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.92 E-value=1.8e-24 Score=145.88 Aligned_cols=118 Identities=20% Similarity=0.283 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.+.+|+|+||++..+..+..+|...||.|..+.+++++++.+.. ..||+||+|+.||+++|+++++.+++..+.+|||+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA-EKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT-SCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEE
Confidence 35689999999999999999999999999999999999999987 67999999999999999999999999989999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+..+.+....+++.|+++|+.||++.++|..++++++
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999886654
No 11
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.92 E-value=1.8e-23 Score=131.99 Aligned_cols=117 Identities=24% Similarity=0.376 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|+++||++..+..+...|+..||.+..+.++++++..+.. ..||++++|+.+|+.+|+++++.+++..+.+|++++|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-ERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMT 82 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-HCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-cCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEE
Confidence 489999999999999999999999999999999999999887 5799999999999999999999999988899999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|..+++++++
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 83 AYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp SSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred ccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 99998889999999999999999999999999998764
No 12
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.92 E-value=2.5e-23 Score=136.11 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=112.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
...+|||+||++..+..+...|...||.+..+.++++++..+.. ..||+||+|+.+++.+|+++++.+++..+.+|||+
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 91 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS-REVDLVISAAHLPQMDGPTLLARIHQQYPSTTRIL 91 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEE
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc-CCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEE
Confidence 45699999999999999999999999999999999999999987 57999999999999999999999999989999999
Q ss_pred EecCCChHHHHHHHHhc-ccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAG-LDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g-~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......++..| +++|+.||++.++|..+|+++++
T Consensus 92 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 92 LTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp ECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999988764
No 13
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.1e-23 Score=135.24 Aligned_cols=118 Identities=25% Similarity=0.405 Sum_probs=106.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh----CCCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM----KVES 100 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~----~~~~ 100 (145)
++++|+|+||++..+..+..+|+..||.+..+.+++++++.+.. ..||+||+|+.||+++|+++++.+++. .+.+
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~ 91 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE-EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYT 91 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCC
Confidence 46799999999999999999999999999999999999999987 579999999999999999999999853 3568
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
|++++|+..+......+++.|+++|+.||++.++|..+++++.
T Consensus 92 pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 92 PVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred eEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875
No 14
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.92 E-value=4.4e-23 Score=129.50 Aligned_cols=117 Identities=26% Similarity=0.405 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|+++||++..+..+...|...||.+..++++++++..+.. ..||++++|+.+|+.+|+++++.+++..+.+|+++++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 79 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE-HIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLT 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc-cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 479999999999999999999999999999999999999987 5799999999999999999999999888899999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp SCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 99999889999999999999999999999999988764
No 15
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.92 E-value=2.5e-23 Score=132.97 Aligned_cols=118 Identities=24% Similarity=0.335 Sum_probs=110.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..+|+++||++..+..+...|+..||.+..+.++.+++..+.. ..||++|+|+.+++.+|+++++.+++..+.+|+|++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN-EFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMV 81 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEE
Confidence 3589999999999999999999999999999999999999987 579999999999999999999999998889999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 82 TGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 999999899999999999999999999999999988764
No 16
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.92 E-value=1.4e-23 Score=138.07 Aligned_cols=120 Identities=24% Similarity=0.398 Sum_probs=112.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCC--CccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGA--KFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~--~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
.+++|+|+||++..+..+...|+..||.+. .+.+.++++..+.. . .||+||+|+.+++.+|+++++.|++..+.+|
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~-~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKN-HYPNIDIVTLXITMPKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-HGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-cCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCc
Confidence 456899999999999999999999999988 99999999999987 5 6899999999999999999999999999999
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
||++++..+......+++.|+++|+.||++.++|..+|++++++
T Consensus 114 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 157 (157)
T 3hzh_A 114 VIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFVK 157 (157)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTCC
T ss_pred EEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988753
No 17
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.92 E-value=3.6e-23 Score=132.52 Aligned_cols=119 Identities=27% Similarity=0.495 Sum_probs=107.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhc----CCCccEEEEeCCCCCCCHHHHHHHHHhh-CCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRT----GAKFHIVFIDMEMPVMDGIEATKAMRAM-KVE 99 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~----~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~ 99 (145)
.++|||+||++..+..+...|+..||. +..+.++++++..+.. +..||++|+|+.||+++|+++++.+++. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 357999999999999999999988975 7789999999998864 1369999999999999999999999974 567
Q ss_pred CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 100 SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.|||++|+..+......+++.|+++|+.||++.++|...+++++.
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988753
No 18
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.92 E-value=4.6e-23 Score=132.07 Aligned_cols=120 Identities=23% Similarity=0.326 Sum_probs=111.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVESKIV 103 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ii 103 (145)
.+.+|+|+||++..+..+...|+..||.+..+.+..+++..+.....||+||+|+.+++.+|+++++.+++. .+.+|+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii 85 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSII 85 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEE
Confidence 356899999999999999999999999999999999999998874349999999999999999999999998 6889999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++++..+......++..|+++|+.||++.++|..+|+++..
T Consensus 86 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (136)
T 3hdv_A 86 VVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELK 126 (136)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998875
No 19
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.92 E-value=3.9e-23 Score=135.45 Aligned_cols=119 Identities=23% Similarity=0.325 Sum_probs=111.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~i 102 (145)
.+.+|||+||++..+..+...|+..||.+..+.++++++..+.. ..||+||+|+.+++.+|+++++.|++.. +.+||
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL-TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT-CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 35689999999999999999999999999999999999999987 6799999999999999999999999864 78999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|++++..+......+++.|+++|+.||++.++|..+++++++
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 85 ILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp EEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998864
No 20
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.92 E-value=1.4e-23 Score=134.64 Aligned_cols=119 Identities=21% Similarity=0.307 Sum_probs=112.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.+++|+|+||++..+..+...|...|+.+..+.+.++++..+.. ..||+||+|+.+++.+|+++++.+++..+.+|+++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL-HAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 35789999999999999999999989999999999999999987 57999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+.+....++..|+++|+.||++.++|..+++++++
T Consensus 85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred EecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875
No 21
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.92 E-value=3.2e-23 Score=130.05 Aligned_cols=117 Identities=28% Similarity=0.453 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
.+|+++||++..+..+...|+..||. +..+.++++++..+.. ..||++++|+.+|+.+|.++++.+++..+.+|++++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~-~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVC 81 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-HCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEE
Confidence 58999999999999999999999999 5589999999999887 579999999999999999999999998889999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (120)
T 1tmy_A 82 SAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVSK 120 (120)
T ss_dssp ECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC-
T ss_pred eCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHhC
Confidence 999999989999999999999999999999999988753
No 22
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.92 E-value=4.4e-24 Score=137.16 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=111.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV--MDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~--~~g~~~~~~l~~~~~~~~i 102 (145)
...+|+|+||++..+..+...|+..||.+..+.++++++..+.. ..||+||+|+.+++ .+|+++++.+++..+.+|+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS-DDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC-TTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-cCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 35689999999999999999999999999999999999999887 67999999999999 9999999999999899999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|++|+..+......+++.|+++|+.||++.++|..+++++.+
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 125 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIIN 125 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998764
No 23
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.91 E-value=6.9e-24 Score=137.55 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=112.5
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhcC-CeEEEecCHHHHHHHHhcC-CCccEEEEeCCCCCCCHHHHHHHHHhhCC
Q 045936 21 VSKNRPYFALVVDDDPMIRRIHSMILKSVG-FKVEVAENGKEAVDLFRTG-AKFHIVFIDMEMPVMDGIEATKAMRAMKV 98 (145)
Q Consensus 21 ~~~~~~~~vlii~~~~~~~~~l~~~l~~~g-~~v~~~~~~~~~l~~l~~~-~~~dlil~d~~~~~~~g~~~~~~l~~~~~ 98 (145)
.....+.+|||+||++..+..+..+|+..| |.+..+.+..+++..+... ..||+||+|+.+++.+|+++++.+++..+
T Consensus 15 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 94 (146)
T 4dad_A 15 LYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHP 94 (146)
T ss_dssp CCCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCT
T ss_pred CCcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCC
Confidence 333456799999999999999999999999 9999999999888776542 46999999999999999999999999999
Q ss_pred CCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 99 ESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 99 ~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.+|+|++++..+.+....++..|+++|+.||++.++|..+|+++++
T Consensus 95 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998875
No 24
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.91 E-value=8.8e-24 Score=135.02 Aligned_cols=119 Identities=23% Similarity=0.324 Sum_probs=109.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
+++|+++||++..+..+...|+..||.+. .+++.++++..+.. ..||+||+|+.+++.+|+++++.+++..+.+|+++
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH-HCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh-cCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 36899999999999999999999999987 89999999999987 57999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
+|+..+......++..|+++|+.||++.++|..++++++++
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 99999988999999999999999999999999999998753
No 25
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.91 E-value=7.7e-23 Score=132.06 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=111.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhc-CCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRT-GAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~-~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
..+|+|+||++..+..+...|...||.+..+.+.++++..+.. ...||+||+|+.+++.+|+++++.+++..+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 4689999999999999999999999999999999999999873 257999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......++..|+++|+.||++.++|..+++++++
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764
No 26
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.91 E-value=2e-23 Score=134.51 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=112.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-cCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHh--hCCCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKS-VGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRA--MKVES 100 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~-~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~--~~~~~ 100 (145)
.+.+|+|+||++..+..+...|+. .||.+..+.+++++++.+.....||+||+|+.++ +.+|+++++.+++ ..+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 356899999999999999999998 8999999999999999987624699999999999 9999999999999 78899
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
|+|++|+..+......++..|+++|+.||++.++|..++++++++
T Consensus 83 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998753
No 27
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.91 E-value=1.7e-24 Score=138.84 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=111.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcC-CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVG-FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g-~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
...+|+++||++..+..+...|+..| |.+..+.++++++..+.. ..||+||+|+.+++.+|+++++.+++..+.+|+|
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 91 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD-TRPGIVILDLGGGDLLGKPGIVEARALWATVPLI 91 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT-CCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc-cCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEE
Confidence 45689999999999999999999999 999999999999998876 6799999999999999999999999998899999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 92 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 92 AVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred EEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998765
No 28
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.91 E-value=6.6e-23 Score=131.16 Aligned_cols=118 Identities=21% Similarity=0.322 Sum_probs=108.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcC--CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVG--FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g--~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
..+|+++||++..+..+...|+..| +.+..+.++.+++..+.. ..||++|+|+.+|+.+|+++++.+++..+.+|+|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~-~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE-YNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh-cCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 3589999999999999999998876 456789999999999887 5799999999999999999999999988899999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++|+..+......++..|+++|+.||++.++|..+++++++
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred EEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998864
No 29
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.91 E-value=4e-23 Score=145.42 Aligned_cols=119 Identities=31% Similarity=0.425 Sum_probs=112.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
..++|+|+||++..+..+...|+..||.+..+.++++++..+.. ..||+||+|+.||+++|+++++.|++..+.+|||+
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 100 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE-TRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALF 100 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 35799999999999999999999999999999999999999987 57999999999999999999999999988999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+|+..+......+++.|+++|+.||++.++|..+|+.+++
T Consensus 101 lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 101 LTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp EECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764
No 30
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.91 E-value=4.2e-23 Score=130.79 Aligned_cols=117 Identities=25% Similarity=0.421 Sum_probs=107.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ii 103 (145)
..+|||+||++..+..+...|+..||.+..+.++++++..+.. ..||+||+|+.+++.+|+++++.+++. .+.+|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST-RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFV 81 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH-SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEE
Confidence 4689999999999999999999999999999999999999987 579999999999999999999999997 7889999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++++..+... ..++..|+++|+.||++.++|..+++...+
T Consensus 82 ~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 82 AVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp EEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred EEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 9999888887 788999999999999999999999987653
No 31
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.91 E-value=1.4e-22 Score=127.62 Aligned_cols=117 Identities=21% Similarity=0.368 Sum_probs=108.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..+|+++||++..+..+...|+..||.+..++++.+++..+.. ..||++++|+.+|+.+|+++++.+++. +.+|++++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~-~~~~ii~~ 80 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKNGLLLARELREQ-ANVALMFL 80 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-SCCSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHhC-CCCcEEEE
Confidence 3479999999999999999999889999999999999999987 579999999999999999999999987 78999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..+++++++
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 999998888999999999999999999999999988764
No 32
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.91 E-value=2.1e-22 Score=126.61 Aligned_cols=116 Identities=23% Similarity=0.432 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|+++||++..+..+...|...||.+..+.++.+++..+.. ..||++++|+.+|+.+|+++++.+++ .+..|+++++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~l~~~~g~~~~~~l~~-~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-QSVDLILLDINLPDENGLMLTRALRE-RSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHT-TCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc-CCCCEEEEeCCCCCCChHHHHHHHHh-cCCCCEEEEE
Confidence 479999999999999999999999999999999999999887 57999999999999999999999998 6789999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 99998888999999999999999999999999988764
No 33
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.91 E-value=1.9e-23 Score=134.52 Aligned_cols=119 Identities=21% Similarity=0.342 Sum_probs=110.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh--hCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA--MKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~--~~~~~~i 102 (145)
.+.+|||+||++..+..+...|...||.+..+.+++++++.+.. ..||+||+|+.+++.+|+++++.+++ ..+.+|+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR-RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 35689999999999999999999999999999999999999988 67999999999999999999999998 6688999
Q ss_pred EEEecCCChHHHH-HHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETERE-VFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~-~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|++++..+..... .++..|+++|+.||++.++|..+++++++
T Consensus 84 i~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 84 VVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp EEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 9999988777766 78999999999999999999999998875
No 34
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.91 E-value=2e-22 Score=127.73 Aligned_cols=119 Identities=33% Similarity=0.443 Sum_probs=109.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCC-eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh--hCCCCc
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA--MKVESK 101 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~-~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~--~~~~~~ 101 (145)
+.++|+++||++..+..+...|...|| .+..+.++.+++..+.. ..||++++|+.+|+.+|+++++.+++ ..+.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ 81 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDGLELLKTIRAXXAMSALP 81 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT-CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCc
Confidence 356899999999999999999999998 68899999999999887 57999999999999999999999998 456889
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++++++..+......+++.|+++|+.||++.++|..+++++++
T Consensus 82 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 82 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988764
No 35
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.91 E-value=1.6e-22 Score=132.03 Aligned_cols=120 Identities=18% Similarity=0.344 Sum_probs=109.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHh--------cCCCccEEEEeCCCCCCCHHHHHHHHH
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGF--KVEVAENGKEAVDLFR--------TGAKFHIVFIDMEMPVMDGIEATKAMR 94 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~--------~~~~~dlil~d~~~~~~~g~~~~~~l~ 94 (145)
.+++|+|+||++..+..+...|...|+ .+..+.+++++++.+. ....||+||+|+.+++.+|+++++.++
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 357899999999999999999999998 7889999999999985 235799999999999999999999999
Q ss_pred h--hCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 95 A--MKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 95 ~--~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+ ..+.+|+|++++..+......+++.|+++|+.||++.++|..+|+++.+
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 9 6678999999999999999999999999999999999999999988753
No 36
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.4e-22 Score=132.24 Aligned_cols=123 Identities=22% Similarity=0.299 Sum_probs=111.3
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhcCCe--EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCC
Q 045936 22 SKNRPYFALVVDDDPMIRRIHSMILKSVGFK--VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVE 99 (145)
Q Consensus 22 ~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~ 99 (145)
....+.+|+|+||++..+..+...|...|+. +..+.+.+++++.+.. ..||+||+|+.+++.+|+++++.+++..+.
T Consensus 11 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~ 89 (152)
T 3eul_A 11 PQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA-HLPDVALLDYRMPGMDGAQVAAAVRSYELP 89 (152)
T ss_dssp ---CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH-HCCSEEEEETTCSSSCHHHHHHHHHHTTCS
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 3345679999999999999999999998854 4589999999999987 579999999999999999999999999999
Q ss_pred CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 100 SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
+|||++++..+......+++.|+++|+.||++.++|..++++++++
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999988753
No 37
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.91 E-value=2.2e-22 Score=129.55 Aligned_cols=119 Identities=20% Similarity=0.404 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-cCCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh--hCCCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKS-VGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA--MKVES 100 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~-~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~--~~~~~ 100 (145)
.+.+|||+|+++..+..+...|.. .||. +..+.+.++++..+.. ..||+||+|+.+++.+|+++++.+++ ..+.+
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 85 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT-VKPDVVMLDLMMVGMDGFSICHRIKSTPATANI 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH-TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTS
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh-cCCCEEEEecccCCCcHHHHHHHHHhCccccCC
Confidence 467899999999999999999998 8999 8899999999999987 57999999999999999999999998 56789
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+|++++..+......++..|+++|+.||++.++|..+++++++
T Consensus 86 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 86 IVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999999998875
No 38
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.91 E-value=1.2e-22 Score=128.04 Aligned_cols=117 Identities=20% Similarity=0.400 Sum_probs=102.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ii~ 104 (145)
.+|+++||++..+..+...|+..||.+..+.++.+++..+.. ..||++|+|+.+|+.+|+++++.+++. .+.+|+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 80 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVA 80 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEE
Confidence 479999999999999999999999999999999999999887 579999999999999999999999985 46889999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......+++.|+++|+.||++.++|..+++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 81 VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 9998888888899999999999999999999999998875
No 39
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.91 E-value=1e-22 Score=129.19 Aligned_cols=118 Identities=24% Similarity=0.399 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC-eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKI 102 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~-~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~i 102 (145)
..+|+++||++..+..+...|...|| .+..++++++++..+.. ..||++++|+.+|+.+|+++++.+++. .+.+|+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~i 84 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ-NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAF 84 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT-SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc-CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 46899999999999999999998898 78889999999999987 579999999999999999999999885 468899
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 85 IILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 999999998888999999999999999999999999998764
No 40
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.91 E-value=1.8e-22 Score=130.50 Aligned_cols=119 Identities=23% Similarity=0.355 Sum_probs=110.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCe--EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh--hCCCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFK--VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA--MKVES 100 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~--~~~~~ 100 (145)
.+.+|+|+||++..+..+...|+..|+. +..+.++++++..+.. ..||+||+|+.+++.+|+++++.+++ ..+.+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ-AKYDLIILDIGLPIANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT-CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcccccCC
Confidence 3578999999999999999999999987 7799999999999987 67999999999999999999999998 56789
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCC-CHHHHHHHHHHHhh
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPL-TMAKIVPLLEELQK 144 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~-~~~~l~~~l~~~~~ 144 (145)
|+|++++..+......++..|+++|+.||+ +.++|..+|+++++
T Consensus 83 pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 83 PIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp CEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999988764
No 41
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.90 E-value=7.3e-23 Score=131.72 Aligned_cols=117 Identities=16% Similarity=0.291 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|+|+||++..+..+...|...||.+..+.++++++..+.. ..||++|+|+.+++.+|+++++.+++..+.+|+++++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls 83 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER-SKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIAT 83 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH-HCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 379999999999999999999889999999999999999887 5799999999999999999999999988899999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|..+++++++
T Consensus 84 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 84 AHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp SSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988763
No 42
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.90 E-value=2.8e-22 Score=125.48 Aligned_cols=116 Identities=27% Similarity=0.461 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|+++||++..+..+...|...||.+..+.++.+++..+.. ..||++++|+.+|+.+|+++++.+++. +.+|+++++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPEIDGLEVAKTIRKT-SSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHH-CCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh-CCCCEEEEeccCCCCCHHHHHHHHHhC-CCCCEEEEe
Confidence 379999999999999999999999999999999999999887 579999999999999999999999974 679999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 99998888899999999999999999999999998765
No 43
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.90 E-value=1.2e-22 Score=130.51 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=108.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..+|+|+||++..+..+...|...||.+..+.++.+++..+.. ..||++|+|+.+|+.+|+++++.+++.. .+|++++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvllD~~l~~~~g~~l~~~l~~~~-~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-NKYDLIFLEIILSDGDGWTLCKKIRNVT-TCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-CCCSEEEEESEETTEEHHHHHHHHHTTC-CCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHccCC-CCCEEEE
Confidence 4689999999999999999999889999999999999999987 5799999999999999999999999865 7899999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 999999889999999999999999999999999988763
No 44
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.90 E-value=2.1e-22 Score=128.88 Aligned_cols=117 Identities=27% Similarity=0.419 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|+++||++..+..+...|...||.+..+.++.+++..+.. ..||++|+|+.+++.+|+++++.+++..+.+|+++++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET-EKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLT 82 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh-cCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 489999999999999999999999999999999999999887 5799999999999999999999999988889999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 83 AKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 120 (136)
T ss_dssp CTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 98888888889999999999999999999999988764
No 45
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.90 E-value=2.2e-22 Score=129.77 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=111.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.+.+|+++||++..+..+...|...||.+..+.+..+++..+.. ..||+||+|+ +++.+|+++++.+++..+.+|+|+
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ 80 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR-EKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAV 80 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT-SCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc-cCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEE
Confidence 35689999999999999999999999999999999999999987 5799999999 999999999999999888999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......++..|+++|+.||++.++|..+++++++
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 81 LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIIS 120 (142)
T ss_dssp EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHh
Confidence 9999999989999999999999999999999999998875
No 46
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.90 E-value=3.5e-22 Score=127.20 Aligned_cols=118 Identities=26% Similarity=0.379 Sum_probs=103.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~i 102 (145)
.+.+|+|+||++..+..+...|...||.+..+.+.++++..+.. ..||+||+|+.+++.+|+++++.+++.. +..+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST-FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKI 83 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeE
Confidence 45689999999999999999999999999999999999999987 5799999999999999999999999876 34555
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++++.... .....+++.|+++|+.||++.++|..+|++...
T Consensus 84 i~~~~~~~-~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 84 LVVSGLDK-AKLQQAVTEGADDYLEKPFDNDALLDRIHDLVN 124 (132)
T ss_dssp EEECCSCS-HHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC
T ss_pred EEEeCCCh-HHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcC
Confidence 55555544 477889999999999999999999999998764
No 47
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.90 E-value=4.5e-22 Score=129.61 Aligned_cols=120 Identities=16% Similarity=0.319 Sum_probs=108.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHhcC------CCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGF--KVEVAENGKEAVDLFRTG------AKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~------~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
.+++|+|+||++..+..+...|+..|+ .+..+.++.+++..+... ..||++|+|+.+|+.+|+++++.|++.
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 357899999999999999999998886 688999999999998741 369999999999999999999999986
Q ss_pred C--CCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 97 K--VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 97 ~--~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
. +.+|+|++|+..+......+++.|+++|+.||++.++|..+++++.+
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4 68899999999998889999999999999999999999999988753
No 48
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.90 E-value=1.8e-22 Score=128.47 Aligned_cols=117 Identities=18% Similarity=0.329 Sum_probs=107.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSV-GFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVESKIV 103 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ii 103 (145)
++|+++||++..+..+...|... ||.+. .+.++++++..+.. ..||++|+|+.+|+.+|+++++.+++. .+..|++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii 81 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE-KRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVI 81 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEE
Confidence 58999999999999999999887 78865 79999999999887 579999999999999999999999986 5778999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++|+..+......++..|+++|+.||++.++|..+++++++
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 82 MLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp EEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998764
No 49
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.90 E-value=2.2e-22 Score=138.10 Aligned_cols=119 Identities=34% Similarity=0.575 Sum_probs=107.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhcCC-eEEEecCHHHHHHHHhcC------------CCccEEEEeCCCCCCCHHHHH
Q 045936 24 NRPYFALVVDDDPMIRRIHSMILKSVGF-KVEVAENGKEAVDLFRTG------------AKFHIVFIDMEMPVMDGIEAT 90 (145)
Q Consensus 24 ~~~~~vlii~~~~~~~~~l~~~l~~~g~-~v~~~~~~~~~l~~l~~~------------~~~dlil~d~~~~~~~g~~~~ 90 (145)
..+.+|||+||++..+..+..+|+..|| .+..+.+++++++.+... ..||+||+|+.||+++|++++
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~ 138 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEAT 138 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHH
Confidence 3567999999999999999999999998 799999999999998762 269999999999999999999
Q ss_pred HHHHhh----CCCCcEEEEecCC-ChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 91 KAMRAM----KVESKIVGVTSRN-SETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 91 ~~l~~~----~~~~~ii~lt~~~-~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+.|++. .+.+|||++|+.. +......+++.|+++|+.||++ +|..+|+++++
T Consensus 139 ~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~ 195 (206)
T 3mm4_A 139 REIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIES 195 (206)
T ss_dssp HHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-
T ss_pred HHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHh
Confidence 999985 5789999999988 7788889999999999999998 89999988764
No 50
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.90 E-value=1.7e-22 Score=130.96 Aligned_cols=119 Identities=16% Similarity=0.298 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh--hCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA--MKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~--~~~~~~i 102 (145)
.+++|||+|+++..+..+...|...||.+..+.+.++++..+.. ..||+||+|+.+++.+|+++++.+++ ..+.+||
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pi 85 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK-THPHLIITEANMPKISGMDLFNSLKKNPQTASIPV 85 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc-CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 46799999999999999999999999999999999999999987 57999999999999999999999998 6788999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|++++..+......++..|+++|+.||++.++|..+++++++
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 86 IALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988763
No 51
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.90 E-value=2.6e-22 Score=130.96 Aligned_cols=119 Identities=25% Similarity=0.314 Sum_probs=109.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.+.+|+|+||++..+..+...|+. ||.+..+.++++++..+....+||+||+|+.+++.+|+++++.+++..+.+|+|+
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 81 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLM 81 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEE
Confidence 356899999999999999999975 8999999999999999987444699999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHhc-ccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAG-LDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g-~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......++..| +++|+.||++.++|..+|+++++
T Consensus 82 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 82 LTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp EECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 99999998999999999 99999999999999999988764
No 52
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.90 E-value=4.3e-22 Score=128.63 Aligned_cols=120 Identities=20% Similarity=0.318 Sum_probs=110.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHhcC----CCccEEEEeCCCCCCCHHHHHHHHHh---
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGF--KVEVAENGKEAVDLFRTG----AKFHIVFIDMEMPVMDGIEATKAMRA--- 95 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~----~~~dlil~d~~~~~~~g~~~~~~l~~--- 95 (145)
...+|||+||++..+..+...|...|+ .+..+.++++++..+... ..||+||+|+.+++.+|+++++.+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 457899999999999999999999998 788999999999998751 36999999999999999999999999
Q ss_pred -hCCCCcEEEEecCCChHHHHHHHHhc-ccEEeeCCCCHHHHHHHHHHHhh
Q 045936 96 -MKVESKIVGVTSRNSETEREVFMQAG-LDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 96 -~~~~~~ii~lt~~~~~~~~~~~~~~g-~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
..+.+|+|++++..+......++..| +++|+.||++.++|..+|++...
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLN 138 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHC
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999999999 99999999999999999998764
No 53
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.90 E-value=3.6e-22 Score=128.27 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=110.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHHHhhCCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP-----VMDGIEATKAMRAMKVES 100 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~-----~~~g~~~~~~l~~~~~~~ 100 (145)
..+|+|+|+++..+..+...|+..||.+..+.+.++++..+.. ..||++|+|+.++ +.+|+++++.+++..+.+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~ 81 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE-ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDL 81 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH-SCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc-CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCC
Confidence 4689999999999999999999999999999999999999988 5799999999999 999999999999998999
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+|++++..+......+++.|+++|+.||++.++|..+++++++
T Consensus 82 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 82 PVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp CEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999999998875
No 54
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.90 E-value=9.7e-23 Score=131.43 Aligned_cols=118 Identities=22% Similarity=0.298 Sum_probs=108.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~~~~~~~ii~ 104 (145)
+.+|+|+||++..+..+...|...||.+..+.++++++..+..+..||+||+|+.+|+ .+|+++++.+++. +.+|+|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii~ 83 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-SELPVVF 83 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEEE
Confidence 5689999999999999999999999999999999999999976347999999999984 9999999999986 7899999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......++..|+++|+.||++.++|..+++++++
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 9999988888889999999999999999999999988764
No 55
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.90 E-value=1e-22 Score=139.28 Aligned_cols=118 Identities=26% Similarity=0.316 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+.+|+|+||++..+..+...|...||.+..+.++.+++..+.. ..||++|+|+.+|+.+|+++++.+++..+.+|||++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~l 82 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP-EQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFI 82 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT-TSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 4589999999999999999999999999999999999999876 579999999999999999999999998889999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+..+......+++.|+++|+.||++.++|..+++.+++
T Consensus 83 s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 83 TAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp ESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 999988888899999999999999999999999987753
No 56
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.90 E-value=3.2e-22 Score=141.84 Aligned_cols=120 Identities=19% Similarity=0.306 Sum_probs=109.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCC--CCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKV--ESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~--~~~i 102 (145)
.+.+||++||++..+..+...|+..||.+..+.++++++..+.....||+||+|+.||+++|+++++.+|+..+ .+||
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~i 202 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAI 202 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeE
Confidence 35689999999999999999999999999999999999999986334899999999999999999999998765 5789
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++|+..+......+++.|+++|+.||++.++|..++++.++
T Consensus 203 i~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 203 IGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp EEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988764
No 57
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.90 E-value=3.8e-22 Score=141.01 Aligned_cols=121 Identities=31% Similarity=0.569 Sum_probs=112.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 23 KNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 23 ~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
...+++||++||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.|++..+.+||
T Consensus 126 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 126 DNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-NHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH-SCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCE
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcE
Confidence 3346799999999999999999999999999999999999999987 579999999999999999999999998889999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|++|+..+......++..|+++|+.||++.++|...++++++
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987753
No 58
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.90 E-value=1.7e-22 Score=128.87 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=103.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ii 103 (145)
+.+|+|+||++..+..+...|+ .||.+..+.++++++..+.. ..||+||+|+.+++.+|+++++.+++. .+.+|+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii 81 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA-HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVI 81 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH-SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEE
Confidence 5689999999999999999998 88999999999999999988 579999999999999999999999997 4589999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++++..+... ..++..|+++|+.||++.++|..+++++++
T Consensus 82 ~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 82 FVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp EEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHh
Confidence 9999887777 788999999999999999999999998874
No 59
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.90 E-value=6.1e-22 Score=129.47 Aligned_cols=119 Identities=17% Similarity=0.249 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.+++|+|+||++..+..+...|...||.+..+.+..+++..+.. ..||+||+|+.+++.+|+++++.+++..+.+|+|+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG-TSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVV 84 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT-SCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence 46789999999999999999999999999999999999999987 57999999999999999999999999888999999
Q ss_pred EecCCChHHHHHHHHhc-ccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAG-LDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g-~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......++..| +++|+.||++.++|..+++++++
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 85 ISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp EECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 99998888888899988 99999999999999999988763
No 60
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.90 E-value=3.6e-22 Score=137.34 Aligned_cols=119 Identities=23% Similarity=0.403 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcC-CeE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVG-FKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g-~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
..++|+|+||++..+..+...|+..| |.+ ..+.++++++..+.. ..||++|+|+.+|+.+|+++++.+++..+.+|+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 82 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMNGLETLDKLREKSLSGRI 82 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH-HCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcE
Confidence 35789999999999999999998764 887 689999999999887 579999999999999999999999998889999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++|+..+......+++.|+++|+.||++.++|..+++.+++
T Consensus 83 i~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 83 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp EEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999998865
No 61
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.90 E-value=8.6e-22 Score=126.11 Aligned_cols=119 Identities=14% Similarity=0.249 Sum_probs=109.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHhcC------CCccEEEEeCCCCCCCHHHHHHHHHhhC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVEVAENGKEAVDLFRTG------AKFHIVFIDMEMPVMDGIEATKAMRAMK 97 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~------~~~dlil~d~~~~~~~g~~~~~~l~~~~ 97 (145)
+++|+++||++..+..+...|+..|+ .+..+++.++++..+... ..||++|+|+.+++.+|+++++.+++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 46899999999999999999999998 888999999999998751 4699999999999999999999999976
Q ss_pred --CCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 98 --VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 98 --~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+.+|+|++++..+......+++.|+++|+.||++.++|...++++++
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999988764
No 62
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.90 E-value=4.2e-22 Score=127.91 Aligned_cols=118 Identities=21% Similarity=0.238 Sum_probs=110.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~~~~~~~i 102 (145)
.+++|||+|+++..+..+...|+..||.+. .+.+.++++..+.. ..||++|+|+.++ +.+|+++++.+++. +.+|+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~-~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD-LRPDIALVDIMLCGALDGVETAARLAAG-CNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-HCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh-CCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCE
Confidence 467899999999999999999999999998 59999999999987 5799999999998 79999999999988 88999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|++++..+......++..|+++|+.||++.++|..+++++++
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 999999999989999999999999999999999999988764
No 63
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.90 E-value=2.5e-22 Score=141.55 Aligned_cols=117 Identities=21% Similarity=0.340 Sum_probs=110.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+.+|+|+||++..+..+...|...||.+..+.++++++..+.. ..||+||+|+.+|+.+|+++++.|++ .+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~DlvllD~~lp~~~G~~l~~~lr~-~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE-DHPDLILLDLGLPDFDGGDVVQRLRK-NSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-SCCSEEEEECCSCHHHHHHHHHHHHT-TCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHc-CCCCCEEEE
Confidence 4689999999999999999999999999999999999999987 57999999999999999999999998 678999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+..+......+++.|+++|+.||++.++|..+|+.+++
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998875
No 64
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.90 E-value=2.8e-22 Score=125.02 Aligned_cols=114 Identities=28% Similarity=0.458 Sum_probs=104.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+|+++||++..+..+...|...||.+..+.++++++..+.. ..||++++|+.+++.+|.++++.+++..+..|+++++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 80 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS-GNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLT 80 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEE
Confidence 379999999999999999999999999999999999999987 5799999999999999999999999988899999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+..+.. ..++..|+++|+.||++.++|..++++++
T Consensus 81 ~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 81 AYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp SCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred CCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 876654 56788999999999999999999998875
No 65
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.90 E-value=7.8e-22 Score=128.84 Aligned_cols=119 Identities=26% Similarity=0.346 Sum_probs=111.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-cCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKS-VGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~-~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
.+++|+|+||++..+..+...|.. .||.+. .+.+..+++..+.. ..||+||+|+.+++.+|+++++.+++..+.+||
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE-TTPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT-TCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 357899999999999999999988 799987 89999999999987 579999999999999999999999999889999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|++++..+......++..|+++|+.||++.++|..+++++++
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998865
No 66
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.89 E-value=6.8e-23 Score=129.63 Aligned_cols=117 Identities=26% Similarity=0.395 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~ii~ 104 (145)
.+|+++||++..+..+...|...||.+..+.++++++..+.. ..||++++|+.+++.+|+++++.+++.. +.+|+++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 81 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVM 81 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS-SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 479999999999999999999999999999999999998876 5799999999999999999999999865 7899999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+|+..+......+++.|+++|+.||++.++|...++++++
T Consensus 82 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 82 LTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp EEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 9999888888889999999999999999999999998765
No 67
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.89 E-value=5.1e-22 Score=129.97 Aligned_cols=118 Identities=22% Similarity=0.285 Sum_probs=110.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+++|+|+|+++..+..+...|...||.+..+.+.++++..+.. ..||++|+|+.+++.+|+++++.+++..+.+|+|++
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA-DFAGIVISDIRMPGMDGLALFRKILALDPDLPMILV 81 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT-TCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999999999999999999999999887 579999999999999999999999998889999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++..+......++..|+++|+.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 82 TGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp ECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 999998889999999999999999999999999987753
No 68
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.89 E-value=2.3e-22 Score=129.56 Aligned_cols=119 Identities=24% Similarity=0.364 Sum_probs=110.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh--hCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA--MKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~--~~~~~~i 102 (145)
.+.+|||+|+++..+..+...|...||.+..+.+.++++..+.. ..||+||+|+.+++.+|+++++.+++ ..+.+||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pi 84 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK-GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAI 84 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCE
Confidence 46789999999999999999999999999999999999999987 57999999999999999999999998 6788999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|++++..+......++..|+++|+.||++.++|..+++++++
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 85 VMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 999998888888889999999999999999999999988764
No 69
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.89 E-value=5.4e-22 Score=124.35 Aligned_cols=116 Identities=24% Similarity=0.360 Sum_probs=107.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|+++||++..+..+...|...||.+..+.++.+++..+.. ..||++++|+.+|+.+|+++++.+++ .+..|+++++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~-~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIEFIRDLRQ-WSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-HCCSEEEEESEETTEEHHHHHHHHHT-TCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHh-CCCCcEEEEE
Confidence 479999999999999999999889999999999999998876 57999999999999999999999994 5789999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 99999888999999999999999999999999988764
No 70
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.89 E-value=1.5e-21 Score=126.32 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=110.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHhcC---------CCccEEEEeCCCCCCCHHHHHHHH
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGF--KVEVAENGKEAVDLFRTG---------AKFHIVFIDMEMPVMDGIEATKAM 93 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~---------~~~dlil~d~~~~~~~g~~~~~~l 93 (145)
.+.+|+|+||++..+..+...|...|+ .+..+.++++++..+... ..||++|+|+.+++.+|+++++.+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 456899999999999999999999998 889999999999999851 369999999999999999999999
Q ss_pred HhhC--CCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 94 RAMK--VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 94 ~~~~--~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++.. +.+|+|++++..+......+++.|+++|+.||++.++|...++++++
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 9876 78999999999999999999999999999999999999999988764
No 71
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.89 E-value=1.5e-21 Score=125.12 Aligned_cols=118 Identities=20% Similarity=0.375 Sum_probs=105.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCC----C-
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKV----E- 99 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~----~- 99 (145)
.+.+|+++||++..+..+...|+..||.+..+.++++++..+.. .. |++++|+.+|+.+|+++++.+++..+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~-dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 83 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH-EH-KVVFMDVCMPGVENYQIALRIHEKFTKQRHQR 83 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT-TC-SEEEEECCSSTTTTTHHHHHHHHHHC-CCSCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-cC-CEEEEeCCCCCCcHHHHHHHHHHhhhhccCCC
Confidence 45789999999999999999999999999999999999998865 44 99999999999999999999985322 2
Q ss_pred CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 100 SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.+++++|+..+......+++.|+++|+.||++.++|..+++++++
T Consensus 84 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 84 PLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred ceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 357788999888888899999999999999999999999998874
No 72
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.89 E-value=4.8e-22 Score=137.36 Aligned_cols=117 Identities=26% Similarity=0.391 Sum_probs=110.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|+|+||++..+..+...|...||.+..+.++.+++..+.. ..||++|+|+.+|+.+|+++++.+++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls 81 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN-EPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLT 81 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 589999999999999999999999999999999999999987 5799999999999999999999999988899999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..+++.+++
T Consensus 82 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 82 ALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp SSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 99988889999999999999999999999999988764
No 73
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.89 E-value=2.2e-22 Score=149.22 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=110.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
+|||+||++..+..+..+|+..||.+..+.++++++..+.. ..||+||+|++||+++|+++++.+++..+.+|||++|+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~ 80 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE-LFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITG 80 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-BCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeC
Confidence 79999999999999999999999999999999999999987 57999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 108 RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
..+.+....+++.|+++|+.||++.++|...++++++
T Consensus 81 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 81 HGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFE 117 (368)
T ss_dssp SSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988763
No 74
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.89 E-value=8e-23 Score=146.94 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=105.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~~~~~~~ii 103 (145)
+.+|+++||++..+..+..+|+..||.+. .+.++.+|+..+.. ..||+||+|+.|| +++|+++++.||+.. .+|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~-~~~dlvl~D~~MPd~mdG~e~~~~ir~~~-~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR-RTPGLVLADIQLADGSSGIDAVKDILGRM-DVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-CCCSEEEEESCCTTSCCTTTTTHHHHHHT-TCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh-CCCCEEEEcCCCCCCCCHHHHHHHHHhcC-CCCEE
Confidence 45899999999999999999999999999 99999999999988 5799999999999 799999999999988 99999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++|+..+ ....++..|+++|+.||+++++|..+|+++++
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~ 276 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALF 276 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHH
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 9999753 45568899999999999999999999998874
No 75
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.89 E-value=2.1e-21 Score=124.83 Aligned_cols=117 Identities=23% Similarity=0.349 Sum_probs=104.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~ii~ 104 (145)
.+|+|+||++..+..+...|+..||.+..+.++.+++..+.. ..||++|+|+.+|+.+|+++++.+++.. +.+|+|+
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 82 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA-TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLM 82 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 589999999999999999999999999999999999999987 5799999999999999999999999853 5789999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+|+.............|+++|+.||++.++|..+++++++
T Consensus 83 ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 83 LTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLA 122 (138)
T ss_dssp EESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHS
T ss_pred EECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHH
Confidence 9988766555556667789999999999999999988764
No 76
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.88 E-value=6.5e-22 Score=127.84 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=101.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--cCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKS--VGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~--~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
.+|+|+||++..+..+...|.. .||.+. .+.++.+++..+.. ..||++|+|+.+|+.+|+++++.+++..+.+|+|
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii 81 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK-HPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVI 81 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT-SCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Confidence 4899999999999999999963 578877 89999999999886 5799999999999999999999999988899999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++|+..+......++..|+++|+.||++.++|..+++++++
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 82 FMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp EECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 99999888888889999999999999999999999987753
No 77
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.88 E-value=5.1e-22 Score=137.92 Aligned_cols=118 Identities=30% Similarity=0.443 Sum_probs=110.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+++|+|+||++..+..+...|...||.+..+.++.+++..+.. ..||++|+|+.+|+.+|+++++.+++..+.+|||++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-NRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVL 85 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-SCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5689999999999999999999999999999999999999987 579999999999999999999999998889999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+..+......+++.|+++|+.||++.++|..+++.+++
T Consensus 86 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 86 SARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp ECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 999888888889999999999999999999999988764
No 78
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.88 E-value=8.8e-22 Score=134.56 Aligned_cols=117 Identities=27% Similarity=0.447 Sum_probs=107.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
+.+|+|+||++..+..+...|...||.+. .+.++.+++..+.. ..||+||+|+.+|+.+|+++++.+++..+. |||+
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~-~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~-pii~ 90 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL-HKPDLVIMDVKMPRRDGIDAASEIASKRIA-PIVV 90 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHHTTCS-CEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh-cCCCEEEEeCCCCCCChHHHHHHHHhcCCC-CEEE
Confidence 35899999999999999999999999988 89999999999887 579999999999999999999999987664 9999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+|+..+......++..|+++|+.||++.++|..+++.+++
T Consensus 91 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 91 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 9999998888899999999999999999999999987653
No 79
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.88 E-value=3.5e-21 Score=123.84 Aligned_cols=115 Identities=18% Similarity=0.281 Sum_probs=104.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
+|+++||++..+..+...|... |.+..+.++.+++..+.. ..||++|+|+.+|+.+|+++++.+++..+.+|+|++++
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~ 80 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE-EWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITG 80 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH-SCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEES
T ss_pred eEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeC
Confidence 7999999999999999999765 889999999999999987 57999999999999999999999999888899999999
Q ss_pred CCChHHHHHHHHh-cccEEeeCCCCHHHHHHHHHHHhh
Q 045936 108 RNSETEREVFMQA-GLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 108 ~~~~~~~~~~~~~-g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
..+......++.. |+++|+.||++.++|..+++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 81 YTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHH
Confidence 8887777777765 599999999999999999987653
No 80
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.88 E-value=2.2e-22 Score=129.55 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=99.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~ii 103 (145)
..+|+|+||++..+..+...|+.. |.+..+.++++++..+.. ..||+||+|+.+++.+|+++++.+++.. +.+|+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH-HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH-HCCSEEEEETTC------CHHHHHHTSTTCTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEE
Confidence 458999999999999999999887 999999999999999987 5799999999999999999999999976 889999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++++..+.+....++..|+++|+.||++.++|..+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp EEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 99999888888889999999999999999999999988864
No 81
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.88 E-value=1.7e-21 Score=122.76 Aligned_cols=116 Identities=18% Similarity=0.245 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHhh--CCCCcEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRAM--KVESKIV 103 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~~--~~~~~ii 103 (145)
.+|+++|+++..+..+...|+..||.+..+.+.++++..+.. ..||++++|+.++ +.+|+++++.+++. .+.+|++
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii 84 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR-DRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIV 84 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH-HCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh-cCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEE
Confidence 589999999999999999999999999999999999999987 5799999999999 99999999999987 6789999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++ +..+......+++.|+++|+.||++.++|...++++++
T Consensus 85 ~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 85 II-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 99 87777888889999999999999999999999998875
No 82
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.88 E-value=4.1e-21 Score=123.77 Aligned_cols=119 Identities=21% Similarity=0.354 Sum_probs=108.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHhc-----CCCccEEEEeCCCCCCCHHHHHHHHHhhC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGF--KVEVAENGKEAVDLFRT-----GAKFHIVFIDMEMPVMDGIEATKAMRAMK 97 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~~-----~~~~dlil~d~~~~~~~g~~~~~~l~~~~ 97 (145)
.+.+|+|+||++..+..+...|+..|+ .+..+.+.++++..+.. ...||+||+|+.+++.+|+++++.+++..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 356899999999999999999999998 89999999999999875 14699999999999999999999999876
Q ss_pred --CCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 98 --VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 98 --~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+.+|+|++++..+......+++.|+++|+.||++.++|..++....
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 7899999999999989999999999999999999999999987654
No 83
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.88 E-value=7.4e-22 Score=125.94 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=107.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+.+|+|+||++..+..+...|+..++.+..+++.++++..+.. . ||+||+|+.+++.+|+++++.+++..+.+|++++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 80 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN-K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILI 80 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC-T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc-C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEE
Confidence 4689999999999999999999888889999999999988876 5 9999999999999999999999999999999999
Q ss_pred ecCCCh-----HHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSE-----TEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~-----~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++..+. .....++..|+++|+.||++.++|..+++++..
T Consensus 81 s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 81 SGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp ESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSC
T ss_pred EeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHh
Confidence 998875 556678899999999999999999999998864
No 84
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.88 E-value=2.3e-21 Score=126.66 Aligned_cols=119 Identities=16% Similarity=0.266 Sum_probs=99.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CC-eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV-GF-KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~-g~-~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
.++|+|+|+++..+..+...|... |+ .+..+.+.++++..+..+..||++|+|+.+++.+|+++++.+++..+.+|+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 468999999999999999999987 88 5779999999999998624699999999999999999999999998899999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++++..+......++..|+++|+.||++.++|..+++++++
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~ 123 (154)
T 2qsj_A 83 LISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILE 123 (154)
T ss_dssp EC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHT
T ss_pred EEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHc
Confidence 99999888888999999999999999999999999998875
No 85
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.87 E-value=3.6e-21 Score=143.56 Aligned_cols=116 Identities=28% Similarity=0.413 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|||+||++..+..+...|...||.+..+.++++++..+.. ..||+||+|+.||+++|+++++.+++..+.+|||++|
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT 79 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE-KHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVIT 79 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH-SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Confidence 479999999999999999999899999999999999999987 5799999999999999999999999988999999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+..+.+....++..|+++|+.||++.++|..++++++
T Consensus 80 ~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (387)
T 1ny5_A 80 GHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAI 116 (387)
T ss_dssp ETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765
No 86
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.87 E-value=1.5e-21 Score=145.64 Aligned_cols=117 Identities=24% Similarity=0.390 Sum_probs=106.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+.+|||+||++..+..+...|+..||.+..+.+++++++.+.. ..||+||+|++||+++|+++++.+++..+.+|||++
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~l 83 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-EQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVL 83 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH-SCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh-CCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 4689999999999999999999999999999999999999987 579999999999999999999999999899999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCC-CHHHHHHHHHHHh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPL-TMAKIVPLLEELQ 143 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~-~~~~l~~~l~~~~ 143 (145)
|+..+.+....+++.|+++|+.||+ +.++|..++++.+
T Consensus 84 t~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 84 SGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp ---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999 6888888776654
No 87
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.87 E-value=1e-20 Score=120.28 Aligned_cols=117 Identities=20% Similarity=0.320 Sum_probs=105.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV-MDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~-~~g~~~~~~l~~~~~~~~ii~ 104 (145)
+++|+|+||++..+..+...|...||.+..+.+.++++..+.....||++|+|+.+++ .+|+++++.+++..+.+|+|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 5689999999999999999999999999999999999999987227999999999997 999999999999888999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+......++..| +|+.||++.++|..+++++.+
T Consensus 85 ~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~ 122 (132)
T 2rdm_A 85 ISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLN 122 (132)
T ss_dssp EESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHH
T ss_pred EeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHh
Confidence 99988887776666665 799999999999999998875
No 88
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.87 E-value=4.2e-21 Score=133.12 Aligned_cols=117 Identities=26% Similarity=0.452 Sum_probs=109.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|+|+||++..+..+...|...||.+..+.++++++..+.. ..||++|+|+.+|+.+|+++++.+++. +.+|+|++|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~dlvllD~~l~~~~g~~~~~~l~~~-~~~~ii~lt 82 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR-AGADIVLLDLMLPGMSGTDVCKQLRAR-SSVPVIMVT 82 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHHH-CSCSEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-cCCCEEEEECCCCCCCHHHHHHHHHcC-CCCCEEEEe
Confidence 589999999999999999999999999999999999999887 579999999999999999999999986 789999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
+..+......+++.|+++|+.||++.++|..+++.++++
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 83 ARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp CCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 998888889999999999999999999999999988753
No 89
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.87 E-value=2e-20 Score=119.91 Aligned_cols=115 Identities=13% Similarity=0.218 Sum_probs=107.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCC-CCcE
Q 045936 24 NRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKV-ESKI 102 (145)
Q Consensus 24 ~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~-~~~i 102 (145)
..+.+|+|+||++..+..+...|...||.+..+.+.++++..+.. ..||++| +++.+|+++++.+++. + .+|+
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlvi----~~~~~g~~~~~~l~~~-~~~~~i 89 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-RNYDLVM----VSDKNALSFVSRIKEK-HSSIVV 89 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-SCCSEEE----ECSTTHHHHHHHHHHH-STTSEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc-CCCCEEE----EcCccHHHHHHHHHhc-CCCccE
Confidence 356799999999999999999999999999999999999999987 5799999 7889999999999998 8 8999
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCC-CHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPL-TMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~-~~~~l~~~l~~~~~ 144 (145)
|++++..+......++..|+++|+.||+ +.++|..+++++++
T Consensus 90 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 90 LVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred EEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 99999999998764
No 90
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.87 E-value=6.1e-21 Score=118.57 Aligned_cols=114 Identities=16% Similarity=0.208 Sum_probs=105.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~ii~ 104 (145)
.+|+++++++..+..+...|+..||.+..+.+.++++..+.. ..||++++|+.+++.+|.++++.+++.. +.+|+|+
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~-~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~ 80 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL-LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVL 80 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh-cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEE
Confidence 479999999999999999999999999999999999999987 5799999999999999999999999875 7899999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++..+.. .++..|+++|+.||++.++|...++++++
T Consensus 81 ~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 81 FLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred EeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 99887766 88899999999999999999999987764
No 91
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.87 E-value=3.6e-21 Score=124.61 Aligned_cols=121 Identities=28% Similarity=0.447 Sum_probs=100.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhc-CCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCC
Q 045936 22 SKNRPYFALVVDDDPMIRRIHSMILKSV-GFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVE 99 (145)
Q Consensus 22 ~~~~~~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~ 99 (145)
....+.+|+++||++..+..++.+|+.. ||.++ .+.++++++..+.....||+||+|+.+++.+|+++++.+++..+
T Consensus 9 ~~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~- 87 (145)
T 3kyj_B 9 HHGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKTR- 87 (145)
T ss_dssp --CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHCC-
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-
Confidence 3345668999999999999999999988 88865 89999999999987327999999999999999999999998776
Q ss_pred CcEEEEec--CCChHHHHHHHHhcccEEeeCCCC----------HHHHHHHHHHHh
Q 045936 100 SKIVGVTS--RNSETEREVFMQAGLDLCYTKPLT----------MAKIVPLLEELQ 143 (145)
Q Consensus 100 ~~ii~lt~--~~~~~~~~~~~~~g~~~~l~kP~~----------~~~l~~~l~~~~ 143 (145)
.++++++. ..+......++..|+++|+.||++ ..++..++++++
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~l~~~i~~~~ 143 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEKTGGELARTMRTLM 143 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------CTTHHHHHHHHHHH
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888877 555667788999999999999999 455666666554
No 92
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.86 E-value=5.5e-21 Score=133.49 Aligned_cols=116 Identities=25% Similarity=0.436 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|+|+||++..+..+...|...||.+..+.++++++..+.. ..||+||+|+.+|+.+|+++++.+++.. .+|||++|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlvilD~~l~~~~g~~~~~~lr~~~-~~~ii~lt 83 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE-LRPDLVLLDLMLPGMNGIDVCRVLRADS-GVPIVMLT 83 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHTTC-CCCEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhCC-CCcEEEEe
Confidence 589999999999999999999999999999999999999887 5799999999999999999999999865 89999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......+++.|+++|+.||++.++|..+++.+++
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 84 AKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp ETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99988888999999999999999999999999998865
No 93
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.86 E-value=2.4e-20 Score=120.26 Aligned_cols=117 Identities=15% Similarity=0.318 Sum_probs=102.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhc-CCeE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSV-GFKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~-g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
.+++|+|+||++..+..+...|... |+.+ ..+.++.+++..+.. ..||++|+|+.+++.+|+++++.+++..+..+|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 86 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH-NKVDAIFLDINIPSLDGVLLAQNISQFAHKPFI 86 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-CCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHccCCCceE
Confidence 3578999999999999999999876 7885 489999999999987 579999999999999999999999988777888
Q ss_pred EEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++++..+ ....++..|+++|+.||++.++|..+++++++
T Consensus 87 i~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 87 VFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp EEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 88888633 56778999999999999999999999988764
No 94
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.86 E-value=2.8e-20 Score=123.09 Aligned_cols=118 Identities=28% Similarity=0.347 Sum_probs=103.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcC-Ce-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVG-FK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g-~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
..++|+|+||++..+..+..+|+..| +. +..+.++++++..+.. ..||+||+|+.+++.+|+++++.+++..+ .|+
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-~~~dlvilD~~l~~~~g~~l~~~lr~~~~-~~i 101 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE-LKPDVITMDIEMPNLNGIEALKLIMKKAP-TRV 101 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHHSC-CEE
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-ceE
Confidence 35789999999999999999999875 44 4479999999999987 57999999999999999999999999887 899
Q ss_pred EEEecCCChH--HHHHHHHhcccEEeeCCCC---------HHHHHHHHHHHhh
Q 045936 103 VGVTSRNSET--EREVFMQAGLDLCYTKPLT---------MAKIVPLLEELQK 144 (145)
Q Consensus 103 i~lt~~~~~~--~~~~~~~~g~~~~l~kP~~---------~~~l~~~l~~~~~ 144 (145)
|++++..+.. ....+++.|+++|+.||++ .+++..++++.+.
T Consensus 102 i~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 102 IMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp EEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred EEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 9998876654 6678999999999999999 6788888877764
No 95
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.86 E-value=1.7e-20 Score=142.10 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ii~ 104 (145)
.+|||+||++..+..+...|...||.+..+.++++++..+.. ..||+||+|+.||+++|+++++.|++. .+.+|||+
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~-~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~ 80 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR-DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVL 80 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEE
Confidence 479999999999999999999999999999999999999887 579999999999999999999999985 35789999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+..+......+++.|+++|+.||++.++|..++++++
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~ 119 (459)
T 1w25_A 81 ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLT 119 (459)
T ss_dssp EECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
No 96
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.86 E-value=1.3e-21 Score=135.66 Aligned_cols=120 Identities=12% Similarity=0.083 Sum_probs=104.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-cCCeEE-EecCHHHHHH-HHhcCCCccEEEEeCCCCCCCHHHHHHHHHh-hCCCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKS-VGFKVE-VAENGKEAVD-LFRTGAKFHIVFIDMEMPVMDGIEATKAMRA-MKVES 100 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~-~g~~v~-~~~~~~~~l~-~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~-~~~~~ 100 (145)
..++|+|+||++..+..+..+|+. .||.+. .+.+..+++. .+.. ..||+||+|+.||+++|+++++.+++ ..+.+
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~-~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~ 84 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES-RSIQMLVIDYSRISDDVLTDYSSFKHISCPDA 84 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG-GGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTC
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc-cCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCC
Confidence 457999999999999999999984 588875 4455555554 3555 57999999999999999999999999 78999
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhhC
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~~ 145 (145)
|||++|+..+......++..|+++|+.||+++++|..++++++++
T Consensus 85 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 85 KEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp EEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred cEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 999999999988888999999999999999999999999988753
No 97
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.86 E-value=8e-22 Score=136.83 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC-CeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG-FKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g-~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++|+|+||++..+..+...|...| |.++ .+.++++++..+.. ..||+||+|+.+|+.+|+++++.+++..+.+|||+
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~-~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 80 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA-ARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLI 80 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH-HCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence 589999999999999999999886 8854 79999999999887 57999999999999999999999999989999999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+|+..+......+++.|+++|+.||++.++|..+++.+++
T Consensus 81 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 120 (225)
T 3c3w_A 81 LTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGA 120 (225)
T ss_dssp GGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999988764
No 98
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.86 E-value=2e-20 Score=129.02 Aligned_cols=114 Identities=23% Similarity=0.327 Sum_probs=106.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
++|+|+||++..+..+...|...| .+..+.++++++..+ ..||++|+|+.+|+.+|+++++.+++..+.+|++++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~---~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt 78 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE---EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLT 78 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC---SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 589999999999999999999888 888999999999876 3599999999999999999999999988899999999
Q ss_pred cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 107 SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+..+......++..|+++|+.||++.++|..+++.+++
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 79 LLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998764
No 99
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.85 E-value=1.6e-20 Score=120.86 Aligned_cols=115 Identities=25% Similarity=0.499 Sum_probs=101.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-----CCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-----KVES 100 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-----~~~~ 100 (145)
+.+|+|+||++..+..+...|...|+.+..+.++++++..+.. ..||++|+|+.+|+.+|+++++.+++. .+.+
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~-~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~ 88 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-RQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRA 88 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH-SCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCce
Confidence 3589999999999999999999889999999999999999987 579999999999999999999999874 3678
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+++++++........ ..|+++|+.||++.++|..+++++++
T Consensus 89 ~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 89 SIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp CCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhC
Confidence 899888866544332 78999999999999999999998874
No 100
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.85 E-value=9.1e-21 Score=121.64 Aligned_cols=120 Identities=12% Similarity=0.171 Sum_probs=102.1
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 21 VSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 21 ~~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
.......+|+++||++..+..+...|+..||.+..+.++.+++..+..+..||++|+|+.+++.+|+++++.+++..+.+
T Consensus 10 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~ 89 (138)
T 2b4a_A 10 HHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQP 89 (138)
T ss_dssp ----CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCC
T ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCC
Confidence 34445678999999999999999999999999999999999999887513699999999999999999999999988899
Q ss_pred cEEEEe-cCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 101 KIVGVT-SRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 101 ~ii~lt-~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+|+++ +..+... ..++ +++|+.||++.++|..+++++++
T Consensus 90 ~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 90 SVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 999999 7766655 5554 99999999999999999988764
No 101
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.84 E-value=9.5e-20 Score=125.82 Aligned_cols=113 Identities=13% Similarity=0.214 Sum_probs=105.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCC-CCcEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKV-ESKIVGV 105 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~-~~~ii~l 105 (145)
++|+|+||++..+..+...|...||.+..+.++++++..+.. ..||++| +|+.+|+++++.+++. + .+|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlvi----lp~~~g~~~~~~lr~~-~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-RNYDLVM----VSDKNALSFVSRIKEK-HSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT-SCCSEEE----ECCTTHHHHHHHHHHH-CTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc-CCCCEEE----eCCCCHHHHHHHHHhC-CCCCcEEEE
Confidence 479999999999999999999999999999999999999987 5799999 8999999999999998 6 8999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCC-CHHHHHHHHHHHhhC
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPL-TMAKIVPLLEELQKN 145 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~-~~~~l~~~l~~~~~~ 145 (145)
|+..+......++..|+++|+.||+ +.++|..+++.++++
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999 999999999988753
No 102
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.84 E-value=1.7e-22 Score=127.07 Aligned_cols=118 Identities=24% Similarity=0.319 Sum_probs=108.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..+|+++||++..+..+...|...||.+..+.++.+++..+.. ..||++++|+.+++.+|+++++.+++..+.+|++++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-KTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS-CCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCB
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-CCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 3479999999999999999999889998899999999999886 579999999999999999999999998889999999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++..+......+++.|+++|+.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp CCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 998888888888999999999999999999999988764
No 103
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.83 E-value=6.2e-20 Score=134.89 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=106.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHH-hcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh--CCCCc
Q 045936 25 RPYFALVVDDDPMIRRIHSMILK-SVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM--KVESK 101 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~-~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~--~~~~~ 101 (145)
...+|||+||++..+..+...|. ..||.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.+++. .+.+|
T Consensus 17 ~~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~-~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 17 GAVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ-IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp -CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH-HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred cCceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 34679999999999999999996 458999899999999999987 579999999999999999999999985 46799
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
||++|+..+......++..|+++|+.||++.++|..+++..
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765
No 104
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.83 E-value=4.6e-20 Score=137.98 Aligned_cols=118 Identities=21% Similarity=0.275 Sum_probs=104.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-cCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKS-VGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~-~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.++|||+||++..+..+...|+. .|+.+..+.+++++++.+.....||+||+|++||+++|+++++.+++..+..+|++
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii~ 82 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVIL 82 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEEE
Confidence 46899999999999999999987 57888899999999999876226999999999999999999999999887777777
Q ss_pred EecCCCh-----HHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 105 VTSRNSE-----TEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~~-----~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+..+. .....++..|+++|+.||++.++|..++++++
T Consensus 83 ~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~ 126 (400)
T 3sy8_A 83 SSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYN 126 (400)
T ss_dssp SCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred EcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHH
Confidence 7777665 45667889999999999999999999998875
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.82 E-value=5.9e-20 Score=124.63 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=100.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.+.+|+|+||++..+..+...|...||.+..+.++.+++ . ..||+||+|+.+|+++|. +++.++...+.+|+|+
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~-~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~ 84 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D-VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVA 84 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S-SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C-CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEE
Confidence 356899999999999999999999999988777766654 3 469999999999999998 8888887658899999
Q ss_pred EecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+|+..+.+....+++.|+++|+.||++.++|..+++.++
T Consensus 85 lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~ 123 (196)
T 1qo0_D 85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSAR 123 (196)
T ss_dssp EECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887664
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.80 E-value=3.3e-18 Score=125.95 Aligned_cols=116 Identities=24% Similarity=0.288 Sum_probs=102.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV-GFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~-g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
+++|||+||++..+..+...|+.. ||. +..+.+++++++.+.. ..||++++|+.||+++|+++++.|++..+ +|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~-~~pDlVllDi~mp~~dGlell~~l~~~~p-~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK-FNPDVLTLDVEMPRMDGLDFLEKLMRLRP-MPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-HCCSEEEEECCCSSSCHHHHHHHHHHSSC-CCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc-cCCCEEEEECCCCCCCHHHHHHHHHhcCC-CcEE
Confidence 468999999999999999999986 888 5589999999999987 57999999999999999999999999877 9999
Q ss_pred EEecCCCh--HHHHHHHHhcccEEeeCCCCH---------HHHHHHHHHHh
Q 045936 104 GVTSRNSE--TEREVFMQAGLDLCYTKPLTM---------AKIVPLLEELQ 143 (145)
Q Consensus 104 ~lt~~~~~--~~~~~~~~~g~~~~l~kP~~~---------~~l~~~l~~~~ 143 (145)
++|+..+. +....+++.|+++|+.||++. ++|...++.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~ 131 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAA 131 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHH
Confidence 99988765 347789999999999999984 77888877664
No 107
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.78 E-value=9.3e-19 Score=139.85 Aligned_cols=118 Identities=8% Similarity=-0.021 Sum_probs=106.9
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCC----CCHHHHHHHHH
Q 045936 27 YFALVVDDDP-MI-------RRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPV----MDGIEATKAMR 94 (145)
Q Consensus 27 ~~vlii~~~~-~~-------~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~----~~g~~~~~~l~ 94 (145)
|+|||+||++ .. +..+...|+..||.|..+.++++++..+.....+|+||+|++||+ ++|+++++.||
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR 80 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHH
Confidence 4899999999 88 999999999999999999999999999987334999999999999 99999999999
Q ss_pred hhCCCCcEEEEecCCC-hHHHHHHHHhcccEEeeCCCCHHH-HHHHHHHHhh
Q 045936 95 AMKVESKIVGVTSRNS-ETEREVFMQAGLDLCYTKPLTMAK-IVPLLEELQK 144 (145)
Q Consensus 95 ~~~~~~~ii~lt~~~~-~~~~~~~~~~g~~~~l~kP~~~~~-l~~~l~~~~~ 144 (145)
+..+.+||+++|+... .+.....+..|+++|+.||++..+ +.++|+..++
T Consensus 81 ~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~r 132 (755)
T 2vyc_A 81 ERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMT 132 (755)
T ss_dssp HHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHH
T ss_pred HhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHH
Confidence 9988999999999876 666777899999999999999999 8888887664
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.74 E-value=1.2e-17 Score=118.24 Aligned_cols=102 Identities=22% Similarity=0.297 Sum_probs=86.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-cCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKS-VGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~-~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
.+|||+||++..+..+...|.. .|+.+..+ ++.+++..+.. ..||+||+|++||+++|+++++.+++. .+|||++
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~-~~~dlvllD~~mP~~~G~~~~~~lr~~--~~pvi~l 80 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG-DEYVVALVDLTLPDAPSGEAVKVLLER--GLPVVIL 80 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT-TTEEEEEEESCBTTBTTSHHHHHHHHT--TCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc-CCCcEEEEeCCCCCCCHHHHHHHHHhC--CCCEEEE
Confidence 5899999999999999999965 47777654 44455555554 579999999999999999999999875 5899999
Q ss_pred ecCCChHHHHHHHHhcccEEeeCCCCH
Q 045936 106 TSRNSETEREVFMQAGLDLCYTKPLTM 132 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~kP~~~ 132 (145)
|+..+.+....+++.||++|+.||...
T Consensus 81 t~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 999999999999999999999999654
No 109
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.33 E-value=1.7e-12 Score=89.71 Aligned_cols=92 Identities=24% Similarity=0.365 Sum_probs=78.1
Q ss_pred CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCC-
Q 045936 51 FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKP- 129 (145)
Q Consensus 51 ~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP- 129 (145)
+.|..+.++.++++.+.. ..||++|+|+.||+.+|+++++.+++..+..++++++.....+....+++.|+++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~-~~~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~ 84 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKE-LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTA 84 (237)
T ss_dssp EEEECCCSSSTTHHHHHH-HCCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHH
T ss_pred EEEEECCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCCc
Confidence 445678889999998887 569999999999999999999999988777777777776677888899999999999999
Q ss_pred -CCHHHHHHHHHHHh
Q 045936 130 -LTMAKIVPLLEELQ 143 (145)
Q Consensus 130 -~~~~~l~~~l~~~~ 143 (145)
++..++...+.+.+
T Consensus 85 ~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 85 AVENPSLITQIAQTF 99 (237)
T ss_dssp HHHCTHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHh
Confidence 77778887776654
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.18 E-value=2.8e-09 Score=80.60 Aligned_cols=115 Identities=12% Similarity=0.167 Sum_probs=95.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--VESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~~~~ii 103 (145)
..++++++++......+...+.. .+.+....+.+++.. ... ..||++++|..||.++|+++++.++... ...|++
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~-~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pii 228 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG-GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVL 228 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH-SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEE
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc-CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcEE
Confidence 45899999999888888777754 355667778887753 344 4699999999999999999999998753 468999
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+++...+......++..|+++|+.||+..+++...+....
T Consensus 229 ~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~ 268 (459)
T 1w25_A 229 AMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQI 268 (459)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred EEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHH
Confidence 9999999888889999999999999999999988776543
No 111
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=98.21 E-value=3.8e-06 Score=67.03 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHH
Q 045936 39 RRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFM 118 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~ 118 (145)
...|...|+..||.|..+.+.++++..+++...+++|++|++++ +.++++.|++..+.+||++++............
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~~ 95 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSLND 95 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHCTTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGGTT
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCCCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccchhh
Confidence 35566888889999999999999999998855689999999875 688999999999999999998875433222112
Q ss_pred HhcccEEeeCCCCH-HHHHHHHH
Q 045936 119 QAGLDLCYTKPLTM-AKIVPLLE 140 (145)
Q Consensus 119 ~~g~~~~l~kP~~~-~~l~~~l~ 140 (145)
..++++|+.+..+. +.+...|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~ 118 (715)
T 3n75_A 96 LRLQISFFEYALGAAEDIANKIK 118 (715)
T ss_dssp SCCEEEEECCCTTCHHHHHHHHH
T ss_pred hhccCeEEEeCCCCHHHHHHHHH
Confidence 35788888876644 44444443
No 112
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=98.21 E-value=3.3e-05 Score=46.06 Aligned_cols=108 Identities=10% Similarity=0.147 Sum_probs=81.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh--hCCC
Q 045936 22 SKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA--MKVE 99 (145)
Q Consensus 22 ~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~--~~~~ 99 (145)
..+++..||++..+-...-.++.++....|+++.... +......|+|+|++.+-..+ +.+ ..+.
T Consensus 8 ~~~~~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~-------~~~e~~AdlIfCEYlLLPe~-------ifS~k~~~~ 73 (121)
T 3q7r_A 8 RTAGPKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQ-------YKQELSADLVVCEYSLLPRE-------IRSPKSLEG 73 (121)
T ss_dssp --CCCEEEEEECSCHHHHHHHHHHSCTTTEEEEEESS-------CCCCTTEEEEEEEGGGSCTT-------CCCCTTCCS
T ss_pred ccCCCcEEEEEecCchhhHHHHHhcCCcceeEEeccc-------cCCcccceeEEEeeecChHH-------hcCCCCCCc
Confidence 3445678999999999999999998767788876542 12224689999998664322 111 1234
Q ss_pred CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 100 SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.-++++-+.-+.+.....+..|+. |+.+|+++.-+-++|+..++
T Consensus 74 ~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLr 117 (121)
T 3q7r_A 74 SFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLS 117 (121)
T ss_dssp CEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHH
T ss_pred ccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHh
Confidence 457788888899999999999999 99999999999999998875
No 113
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=98.08 E-value=4.2e-05 Score=53.42 Aligned_cols=98 Identities=9% Similarity=0.015 Sum_probs=69.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 22 SKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 22 ~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
+...+.+||+++|++..+..+..+|..+|+.+..+.+ .. ...+|++++|++++...+ ...
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~~-~~~~~~ii~d~~~~~~~~------------~~~ 66 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------QE-PTPEDVLITDEVVSKKWQ------------GRA 66 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------CC-CCTTCEEEEESSCSCCCC------------SSE
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------CC-CCcCcEEEEcCCCccccc------------cce
Confidence 4456789999999999999999999999999887764 12 256999999999876532 122
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++.++....... ...+...++.+|+...++...+.++.
T Consensus 67 ~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 67 VVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp EEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred EEEEecccCCCc----ccccCCceeccccchHHHHHHHHHHh
Confidence 455554332110 12344578899999988888877654
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=97.98 E-value=0.00078 Score=44.02 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=80.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhh
Q 045936 26 PYFALVV----DDDPMIRRIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAM 96 (145)
Q Consensus 26 ~~~vlii----~~~~~~~~~l~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~ 96 (145)
..+|++. |.+..-...+...|+..||+|.. ..+.++.++.+.. ..+|+|.+...+... ...++++.|++.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~-~~~diV~lS~~~~~~~~~~~~~i~~L~~~ 96 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ-EDVDVIGVSILNGAHLHLMKRLMAKLREL 96 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH-TTCSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-cCCCEEEEEeechhhHHHHHHHHHHHHhc
Confidence 3467777 67777778889999999999873 4578888888887 579999988766532 244677888886
Q ss_pred CC-CCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 97 KV-ESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 97 ~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+ +++|+ +.+.........+...|++.++..--+..+....+++.+
T Consensus 97 g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~ 143 (161)
T 2yxb_A 97 GADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLA 143 (161)
T ss_dssp TCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHH
Confidence 54 56655 445544445555778999986654445556666665543
No 115
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=97.33 E-value=0.0073 Score=38.24 Aligned_cols=109 Identities=10% Similarity=0.002 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHhcCCeEE---EecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhhCC-CCcEEEEec
Q 045936 34 DDPMIRRIHSMILKSVGFKVE---VAENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAMKV-ESKIVGVTS 107 (145)
Q Consensus 34 ~~~~~~~~l~~~l~~~g~~v~---~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~~~-~~~ii~lt~ 107 (145)
.+..-...+...|+..||+|. ...+.++.++.+.+ ..+|+|.+...+.... ..++++.+++... ++++++=..
T Consensus 15 ~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~-~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 15 CHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE-TKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGN 93 (137)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH-HTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEES
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-cCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 344455667788899999977 46688999998887 5699999887765432 3357788887654 566544332
Q ss_pred C----CChH-HHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 108 R----NSET-EREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 108 ~----~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
. .+.. ....+.+.|++.|+..--+..++...+...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 94 IVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp CSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred CcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHh
Confidence 2 1111 2455789999999977777777777776543
No 116
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.85 E-value=0.0071 Score=40.93 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=59.8
Q ss_pred CHHHHHHHHhcCCCccEEEEeC-CCCCCCHH--HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe------eC
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDM-EMPVMDGI--EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY------TK 128 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~-~~~~~~g~--~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l------~k 128 (145)
+..+.+..+......++++.+. ..+.++|+ +.++.++.. .+.|++.+++...++....++..|+++++ .+
T Consensus 131 ~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~~~-~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHGGG-CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHHHh-cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556555555423456888886 44545554 455555543 37899999999999999999999999984 78
Q ss_pred CCCHHHHHHHHHH
Q 045936 129 PLTMAKIVPLLEE 141 (145)
Q Consensus 129 P~~~~~l~~~l~~ 141 (145)
|++..++...+++
T Consensus 210 ~~~~~~~~~~l~~ 222 (237)
T 3cwo_X 210 EIDVRELKEYLKK 222 (237)
T ss_dssp SSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 9999998887653
No 117
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=96.74 E-value=0.077 Score=37.10 Aligned_cols=110 Identities=11% Similarity=0.035 Sum_probs=73.7
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCCC-C-HHHHHHHHHhh
Q 045936 26 PYFALVV----DDDPMIRRIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVM-D-GIEATKAMRAM 96 (145)
Q Consensus 26 ~~~vlii----~~~~~~~~~l~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~~-~-g~~~~~~l~~~ 96 (145)
..+|++. |-+..-...+..+|+..||.|.. --..++.+..+.. ..||+|.+...+... . ..++++.+++.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~-~~~d~V~lS~l~~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK-EKPIMLTGTALMTTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH-HCCSEEEEECCCTTTTTHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEEeeccCCHHHHHHHHHHHHhc
Confidence 3467766 45566677888899999999752 3467777787776 569999998876543 3 44688899888
Q ss_pred CCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 97 KVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+.++|++-......+. +...|++.|.... .+....++++
T Consensus 202 ~~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l 241 (258)
T 2i2x_B 202 GIKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAI 241 (258)
T ss_dssp TCCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHH
T ss_pred CCCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHH
Confidence 77777776555555443 2367887776433 3444444433
No 118
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=96.50 E-value=0.023 Score=38.75 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=69.0
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhcCCeEEEe---cCHHHHHHHHhcCCCccEEEE--eCCCCC-CC-HHHHHHHHHh
Q 045936 27 YFALVV----DDDPMIRRIHSMILKSVGFKVEVA---ENGKEAVDLFRTGAKFHIVFI--DMEMPV-MD-GIEATKAMRA 95 (145)
Q Consensus 27 ~~vlii----~~~~~~~~~l~~~l~~~g~~v~~~---~~~~~~l~~l~~~~~~dlil~--d~~~~~-~~-g~~~~~~l~~ 95 (145)
-+|++. |-+..-...+..+|+..||+|... -..++.++.+.. ..||+|.+ ...+.. .. ..++++.+++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~-~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~ 171 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK-HKGEKVLLVGSALMTTSMLGQKDLMDRLNE 171 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH-TTTSCEEEEEECSSHHHHTHHHHHHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH-cCCCEEEEEchhcccCcHHHHHHHHHHHHH
Confidence 466666 566666777888999999998743 467888888887 57999999 776642 23 4468888888
Q ss_pred hCC--CCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 96 MKV--ESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 96 ~~~--~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
... +++|++-.....++. +...|++.|-.
T Consensus 172 ~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 172 EKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp TTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred cCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 765 677766655555543 44679988864
No 119
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=96.46 E-value=0.062 Score=36.24 Aligned_cols=97 Identities=16% Similarity=0.034 Sum_probs=67.6
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhcCCeEEEe---cCHHHHHHHHhcCCCccEEEEeCCCCCC-C-HHHHHHHHHhhC
Q 045936 27 YFALVV----DDDPMIRRIHSMILKSVGFKVEVA---ENGKEAVDLFRTGAKFHIVFIDMEMPVM-D-GIEATKAMRAMK 97 (145)
Q Consensus 27 ~~vlii----~~~~~~~~~l~~~l~~~g~~v~~~---~~~~~~l~~l~~~~~~dlil~d~~~~~~-~-g~~~~~~l~~~~ 97 (145)
.+|++. |-+..-...+...|+..||.+... -..++.++.+.. ..||+|.+...+... . ..++++.+++..
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~ 167 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK-YQPDIVGMSALLTTTMMNMKSTIDALIAAG 167 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH-HCCSEEEEECCSGGGTHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHhcC
Confidence 367777 566677788888999999998743 367778888776 569999998866543 2 345778888764
Q ss_pred --CCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 98 --VESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 98 --~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+++||++-....+.+. +...|++.|..
T Consensus 168 ~~~~~~v~vGG~~~~~~~---~~~~gad~~~~ 196 (210)
T 1y80_A 168 LRDRVKVIVGGAPLSQDF---ADEIGADGYAP 196 (210)
T ss_dssp CGGGCEEEEESTTCCHHH---HHHHTCSEECS
T ss_pred CCCCCeEEEECCCCCHHH---HHHcCCeEEEC
Confidence 4577766555555433 35679988764
No 120
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=96.42 E-value=0.077 Score=42.69 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=76.9
Q ss_pred EEEEEe----CCHHHHHHHHHHHHhcCCeEEEe---cCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCC
Q 045936 28 FALVVD----DDPMIRRIHSMILKSVGFKVEVA---ENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKV 98 (145)
Q Consensus 28 ~vlii~----~~~~~~~~l~~~l~~~g~~v~~~---~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~ 98 (145)
+|++.- .+..-...+...|...||+|... .+.++.++.+.+ ..+|+|.+...+... ...++++.|++...
T Consensus 606 kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-~~adiVglSsl~~~~~~~~~~vi~~Lr~~G~ 684 (762)
T 2xij_A 606 RLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD-ADVHAVGVSTLAAGHKTLVPELIKELNSLGR 684 (762)
T ss_dssp EEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-TTCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH-cCCCEEEEeeecHHHHHHHHHHHHHHHhcCC
Confidence 565553 34444566777889999998742 467888888877 569988887665432 24568888888766
Q ss_pred CCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 99 ESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 99 ~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.-..+++.+.........+.+.|++.|+..--+..+....+.+.+
T Consensus 685 ~dv~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l 729 (762)
T 2xij_A 685 PDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 729 (762)
T ss_dssp TTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHH
Confidence 323344444233334556789999999986557777776665544
No 121
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=96.41 E-value=0.062 Score=43.00 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=77.6
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhcCCeEEEe---cCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhC
Q 045936 27 YFALVV----DDDPMIRRIHSMILKSVGFKVEVA---ENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMK 97 (145)
Q Consensus 27 ~~vlii----~~~~~~~~~l~~~l~~~g~~v~~~---~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~ 97 (145)
.+|++. |.+..-...+...|...||+|... .+.++.++...+ ..+|+|.+...+... ...++++.|++..
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-~~adiVglSsl~~~~~~~~~~vi~~L~~~G 675 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKLG 675 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH-TTCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH-cCCCEEEEeeecHhHHHHHHHHHHHHHhcC
Confidence 356655 344445566777889999998743 467888888887 569988887765432 2456888888876
Q ss_pred CCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 98 VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 98 ~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
..-..+++.+.........+.+.|++.|+..--+..++...+.+.+
T Consensus 676 ~~~i~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l 721 (727)
T 1req_A 676 RPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKL 721 (727)
T ss_dssp CTTSEEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHH
Confidence 6323344554333334556789999999986667777666665544
No 122
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=96.40 E-value=0.086 Score=36.26 Aligned_cols=88 Identities=8% Similarity=0.069 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCC------CCCCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 36 PMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDME------MPVMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 36 ~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~------~~~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
|.....+...+++.|..+. .+++.+++...... .+|.|.+... .....++++++.+++. ++|+|.-.+-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~--Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~--~ipvIA~GGI 190 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK--GIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA--GCRVIAEGRY 190 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT--TCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT--TCCEEEESSC
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC--CCCEEEecCccCCCCCcCCCCCHHHHHHHHHc--CCCEEEECCC
Confidence 4445555566666786644 78899999887765 3898864321 1234567888888875 7888888888
Q ss_pred CChHHHHHHHHhcccEEee
Q 045936 109 NSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~~l~ 127 (145)
.+++....++..|+++++.
T Consensus 191 ~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 191 NTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 8899999999999999863
No 123
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=96.04 E-value=0.18 Score=34.73 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCC-C-----CCCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 36 PMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDME-M-----PVMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 36 ~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~-~-----~~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
|.....+...+++.|..+. .+++.+++.+.... .+|.|.+... . ....++++++.+++. ++|++.-.+-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~--Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~--~ipvIA~GGI 190 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQRL--GADIIGTTMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAEGRY 190 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT--TCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT--TCCEEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC--CCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc--CCcEEEECCC
Confidence 4455555666666786644 78899999887765 3898864321 1 223467888888875 7888888887
Q ss_pred CChHHHHHHHHhcccEEee
Q 045936 109 NSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~~l~ 127 (145)
.+.+....++..|+++++.
T Consensus 191 ~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 191 NSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 7899999999999999863
No 124
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=96.00 E-value=0.19 Score=35.34 Aligned_cols=112 Identities=6% Similarity=0.010 Sum_probs=74.2
Q ss_pred CcEEEEE----eCCHHHHHHHHHH--------HHhc-CCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCCC----C
Q 045936 26 PYFALVV----DDDPMIRRIHSMI--------LKSV-GFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVM----D 85 (145)
Q Consensus 26 ~~~vlii----~~~~~~~~~l~~~--------l~~~-g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~~----~ 85 (145)
..+|++. |-+..-...+..+ |+.. ||+|.. .-..++.++.+.. ..+|+|.+...+... .
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e-~~~d~VglS~l~t~~~~~~~ 198 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE-LEADVLLVSQTVTQKNVHIQ 198 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH-TTCSEEEEECCCCTTSHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEEeecCCccchHH
Confidence 3456554 4555555566666 8899 999863 3478888888887 579999999887752 2
Q ss_pred -HHHHHHHHHhhCC--CCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 86 -GIEATKAMRAMKV--ESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 86 -g~~~~~~l~~~~~--~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
..++++.+++... ++++++=....+. ..+.+.|++.|..-.....++...+..
T Consensus 199 ~~~~~i~~L~~~g~~~~i~vivGG~~~~~---~~a~~iGad~~~~da~~~~~~a~~l~~ 254 (262)
T 1xrs_B 199 NMTHLIELLEAEGLRDRFVLLCGGPRINN---EIAKELGYDAGFGPGRFADDVATFAVK 254 (262)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEECTTCCH---HHHHTTTCSEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCcCCH---HHHHHcCCeEEECCchHHHHHHHHHHH
Confidence 2346777877643 3555443333333 336688999999877777666665543
No 125
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.74 E-value=0.32 Score=35.66 Aligned_cols=104 Identities=9% Similarity=0.077 Sum_probs=72.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhc---CCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 24 NRPYFALVVDDDPMIRRIHSMILKSV---GFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 24 ~~~~~vlii~~~~~~~~~l~~~l~~~---g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
..+.++.|+|.++.....|..++.+. .|++..|++.+.+.+..++ ..+|++++|-.+.... ......+
T Consensus 19 ~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~-~~~dilli~e~~~~~~--------~~~~~~~ 89 (373)
T 3fkq_A 19 GMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKE-YRIDVLIAEEDFNIDK--------SEFKRNC 89 (373)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHH-HTCSEEEEETTCCCCG--------GGGCSSC
T ss_pred CceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhc-CCCCEEEEcchhhhhh--------hhhcccC
Confidence 34678999999999999999999643 4889999999999999887 5799999997765431 1122345
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
++++++.....+. ..-...+.|--+.+++...+...
T Consensus 90 ~v~~l~~~~~~~~------~~~~~~i~kyq~~~~i~~ei~~~ 125 (373)
T 3fkq_A 90 GLAYFTGTPGIEL------IKDEIAICKYQRVDVIFKQILGV 125 (373)
T ss_dssp EEEEEESCTTCCE------ETTEEEEETTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCc------CCCCceeeccCCHHHHHHHHHHH
Confidence 6666655432210 11123577888888887666443
No 126
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=94.86 E-value=0.66 Score=32.68 Aligned_cols=98 Identities=8% Similarity=0.023 Sum_probs=65.5
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCC-CC-CCHHHHHHHHHhhCC-CCc
Q 045936 28 FALVVDD--DPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEM-PV-MDGIEATKAMRAMKV-ESK 101 (145)
Q Consensus 28 ~vlii~~--~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~-~~-~~g~~~~~~l~~~~~-~~~ 101 (145)
.|+++.. ++.....+....+..|..+. .+++.+++...+.. .+|+|-+.-.- .. ..+++.+..+...-+ +.|
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~--Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~p 215 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA--GAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVI 215 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--TCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSE
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC--CCCEEEECCCcccccccCHHHHHHHHHhCcccCE
Confidence 3555422 33344555666677897744 78999998777665 37888776321 11 123556677766544 678
Q ss_pred EEEEecCCChHHHHHHHHhcccEEee
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
++..++-.+++....+...|+++++.
T Consensus 216 vVaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 216 RIAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 88877777889999999999999864
No 127
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=94.56 E-value=0.78 Score=32.17 Aligned_cols=95 Identities=9% Similarity=0.079 Sum_probs=63.2
Q ss_pred HHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCC--C---CCHHHHHHHHHhhCCCCcEEEEecCCChHHH
Q 045936 42 HSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMP--V---MDGIEATKAMRAMKVESKIVGVTSRNSETER 114 (145)
Q Consensus 42 l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~--~---~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~ 114 (145)
....|...||.+. +..|...+-+.... .+++| +.+..+ . ....++++.+++ .+++|||+=..-..++..
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~--G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e-~~~vPVI~eGGI~TPsDA 202 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAEI--GCIAV-MPLAGLIGSGLGICNPYNLRIILE-EAKVPVLVDAGVGTASDA 202 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHHS--CCSEE-EECSSSTTCCCCCSCHHHHHHHHH-HCSSCBEEESCCCSHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHh--CCCEE-EeCCccCCCCCCcCCHHHHHHHHh-cCCCCEEEeCCCCCHHHH
Confidence 3444556799866 56666666555544 36777 443332 1 224678898888 467898887788899999
Q ss_pred HHHHHhcccEEe-----eCCCCHHHHHHHHH
Q 045936 115 EVFMQAGLDLCY-----TKPLTMAKIVPLLE 140 (145)
Q Consensus 115 ~~~~~~g~~~~l-----~kP~~~~~l~~~l~ 140 (145)
..+++.|+++++ .|.-++..+...+.
T Consensus 203 a~AmeLGAdgVlVgSAI~~a~dP~~ma~af~ 233 (265)
T 1wv2_A 203 AIAMELGCEAVLMNTAIAHAKDPVMMAEAMK 233 (265)
T ss_dssp HHHHHHTCSEEEESHHHHTSSSHHHHHHHHH
T ss_pred HHHHHcCCCEEEEChHHhCCCCHHHHHHHHH
Confidence 999999999985 44444555544443
No 128
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=94.55 E-value=0.29 Score=38.74 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=73.8
Q ss_pred CcEEEEE----eCCHHHHHHH----HHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCC----CCH-HHH
Q 045936 26 PYFALVV----DDDPMIRRIH----SMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPV----MDG-IEA 89 (145)
Q Consensus 26 ~~~vlii----~~~~~~~~~l----~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~----~~g-~~~ 89 (145)
+.+|++. |-+..-...+ ...|+..||+|.. .-+.++.++.+.+ ..+|+|.+...+.. ... .++
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E-edADVVGLSsLLTt~dihL~~Mkev 680 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE-LKADAILASTIISHDDIHYKNMKRI 680 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH-TTCSEEEEECCCCGGGHHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEeccccCchhhHHHHHHH
Confidence 3467776 3333333222 4678889999873 3478899998887 57999999987776 233 357
Q ss_pred HHHHHhhCCC--CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 90 TKAMRAMKVE--SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 90 ~~~l~~~~~~--~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
++.+++.... ++|++=....+++ -+...|++.|........++...+..
T Consensus 681 IelLrE~GlrDkIkVIVGGa~~tqd---~AkeIGADa~f~DATeAVeVA~~Ll~ 731 (763)
T 3kp1_A 681 HELAVEKGIRDKIMIGCGGTQVTPE---VAVKQGVDAGFGRGSKGIHVATFLVK 731 (763)
T ss_dssp HHHHHHTTCTTTSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHH---HHHHcCCcEEECCcchHHHHHHHHHH
Confidence 7888887654 4444333333433 34589999999877777666665544
No 129
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=94.03 E-value=0.52 Score=32.45 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=61.2
Q ss_pred HHHHHHhcCC-eEEEecCHHHHHHHHh---cCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHH
Q 045936 42 HSMILKSVGF-KVEVAENGKEAVDLFR---TGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVF 117 (145)
Q Consensus 42 l~~~l~~~g~-~v~~~~~~~~~l~~l~---~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~ 117 (145)
+.+.+.+.+. .|....+.+++....+ .+ ...++=+. +...++.+.++.+++..+. .++-..+..+.+....+
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~g-Gi~~iEvt--~~t~~a~e~I~~l~~~~~~-~~iGaGTVlt~~~a~~A 102 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAEN-GLPAAEIT--FRSDAAVEAIRLLRQAQPE-MLIGAGTILNGEQALAA 102 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHT-TCCEEEEE--TTSTTHHHHHHHHHHHCTT-CEEEEECCCSHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHC-CCCEEEEe--CCCCCHHHHHHHHHHhCCC-CEEeECCcCCHHHHHHH
Confidence 4555666673 4666777777666543 32 35555444 4455789999999998765 34445556678889999
Q ss_pred HHhcccEEeeCCCCHHHHHHHHH
Q 045936 118 MQAGLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 118 ~~~g~~~~l~kP~~~~~l~~~l~ 140 (145)
.++|++-.+. |....++....+
T Consensus 103 i~AGA~fIvs-P~~~~~vi~~~~ 124 (232)
T 4e38_A 103 KEAGATFVVS-PGFNPNTVRACQ 124 (232)
T ss_dssp HHHTCSEEEC-SSCCHHHHHHHH
T ss_pred HHcCCCEEEe-CCCCHHHHHHHH
Confidence 9999977655 555555554443
No 130
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=94.00 E-value=0.95 Score=31.31 Aligned_cols=86 Identities=7% Similarity=0.028 Sum_probs=60.0
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHHHhhC-CCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPV-------MDGIEATKAMRAMK-VESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~-------~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+++.+++.+.... .+|.|.+.--.+. .-|++.++++++.. ..+|++.+.+- +.+....++..|++++.
T Consensus 141 S~ht~~Ea~~A~~~--GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gva 217 (243)
T 3o63_A 141 STHDPDQVAAAAAG--DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIV 217 (243)
T ss_dssp EECSHHHHHHHHHS--SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEE
T ss_pred eCCCHHHHHHHhhC--CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEE
Confidence 68899998877664 4899988653332 23677888887753 47899888766 67778889999999974
Q ss_pred -----eCCCCHHHHHHHHHHHh
Q 045936 127 -----TKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 127 -----~kP~~~~~l~~~l~~~~ 143 (145)
.+.-++.+-.+.+.+.+
T Consensus 218 v~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 218 VVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp ESHHHHTCSSHHHHHHHHHHHH
T ss_pred EeHHHhCCCCHHHHHHHHHHHH
Confidence 45556666665555544
No 131
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=93.55 E-value=1.3 Score=30.97 Aligned_cols=100 Identities=8% Similarity=0.031 Sum_probs=63.2
Q ss_pred HHHHHHhcCC--eEEEec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC-CCCcEEEEecCCChHHHHHH
Q 045936 42 HSMILKSVGF--KVEVAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK-VESKIVGVTSRNSETEREVF 117 (145)
Q Consensus 42 l~~~l~~~g~--~v~~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~ 117 (145)
++..|..... -.+... +..+.++.+.. ..+|.|++|+.....+.-++...++... ..+++++=.+..+...+..+
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~-~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~~ 84 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAE-AGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRL 84 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHH-TTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhc-CCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 4455544322 233333 34555555554 3599999999887776666666665532 23444444555667788889
Q ss_pred HHhcccEE-eeCCCCHHHHHHHHHHH
Q 045936 118 MQAGLDLC-YTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 118 ~~~g~~~~-l~kP~~~~~l~~~l~~~ 142 (145)
++.|++.. ++|--+.+++....+.+
T Consensus 85 ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 85 LDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999986 56677888887776553
No 132
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=93.55 E-value=0.67 Score=32.35 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCC------ChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 86 GIEATKAMRAMKVESKIVGVTSRN------SETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~lt~~~------~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+++++.+|+..|+.|+++++-.. -......+.++|+++++...+..+++...++..
T Consensus 81 ~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 81 VLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 446688888776688998863322 134567788999999998888777766655443
No 133
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=93.22 E-value=0.39 Score=33.73 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=60.1
Q ss_pred HHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCC--CC---CHHHHHHHHHhhCCC-CcEEEEecCCChHHHHH
Q 045936 45 ILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMP--VM---DGIEATKAMRAMKVE-SKIVGVTSRNSETEREV 116 (145)
Q Consensus 45 ~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~--~~---~g~~~~~~l~~~~~~-~~ii~lt~~~~~~~~~~ 116 (145)
.|...||.+. +..|...+-+.... .+++| +.+..+ .. ...++++.+++..++ .|||+=..-..++....
T Consensus 119 ~L~k~Gf~Vlpy~~~D~~~ak~l~~~--G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~ 195 (268)
T 2htm_A 119 RLIEEDFLVLPYMGPDLVLAKRLAAL--GTATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAE 195 (268)
T ss_dssp HHHHTTCEECCEECSCHHHHHHHHHH--TCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHH
T ss_pred HHHHCCCEEeeccCCCHHHHHHHHhc--CCCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHH
Confidence 3445698866 44566555444443 36666 554432 11 235668888875566 89988788889999999
Q ss_pred HHHhcccEEe-----eCCCCHHHHHHHHH
Q 045936 117 FMQAGLDLCY-----TKPLTMAKIVPLLE 140 (145)
Q Consensus 117 ~~~~g~~~~l-----~kP~~~~~l~~~l~ 140 (145)
+++.|+++.+ .|.-++......+.
T Consensus 196 AmeLGAdgVlVgSAI~~a~dP~~ma~af~ 224 (268)
T 2htm_A 196 VMELGLDAVLVNTAIAEAQDPPAMAEAFR 224 (268)
T ss_dssp HHHTTCCEEEESHHHHTSSSHHHHHHHHH
T ss_pred HHHcCCCEEEEChHHhCCCCHHHHHHHHH
Confidence 9999999975 45444555544443
No 134
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=93.09 E-value=0.58 Score=31.90 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=41.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHH
Q 045936 72 FHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPL 138 (145)
Q Consensus 72 ~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 138 (145)
..++=+.+ ....+++.++.+++.+|. .+|-..+..+.+....+.++|++-.+. |....++.+.
T Consensus 39 i~~iEvt~--~t~~a~~~I~~l~~~~p~-~~IGAGTVlt~~~a~~ai~AGA~fivs-P~~~~evi~~ 101 (217)
T 3lab_A 39 VHLLEVTL--RTEAGLAAISAIKKAVPE-AIVGAGTVCTADDFQKAIDAGAQFIVS-PGLTPELIEK 101 (217)
T ss_dssp CCEEEEET--TSTTHHHHHHHHHHHCTT-SEEEEECCCSHHHHHHHHHHTCSEEEE-SSCCHHHHHH
T ss_pred CCEEEEeC--CCccHHHHHHHHHHHCCC-CeEeeccccCHHHHHHHHHcCCCEEEe-CCCcHHHHHH
Confidence 44444433 344678888888887766 455666677888888888888876665 4444444433
No 135
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=92.88 E-value=1.7 Score=34.04 Aligned_cols=99 Identities=7% Similarity=0.082 Sum_probs=67.7
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhcCCeEEEe---cCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhh
Q 045936 26 PYFALVV----DDDPMIRRIHSMILKSVGFKVEVA---ENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAM 96 (145)
Q Consensus 26 ~~~vlii----~~~~~~~~~l~~~l~~~g~~v~~~---~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~ 96 (145)
..+|++. |-+..-...+..+|+..||.|... -..++.+..+.. ..+|+|.+...+... ...++++.|++.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~-~~~diVgLS~l~t~~~~~m~~~i~~Lr~~ 176 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE-VNADLIGLSGLITPSLDEMVNVAKEMERQ 176 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH-HTCSEEEEECCSTHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEEecCCCCHHHHHHHHHHHHHc
Confidence 3467766 456666677888899999998743 467888888876 579999998866432 133577888887
Q ss_pred CCCCcEEEEecCCChHHHHHHHHh-----cccEEee
Q 045936 97 KVESKIVGVTSRNSETEREVFMQA-----GLDLCYT 127 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~~~~~-----g~~~~l~ 127 (145)
.+++||++-.......... ... |++.|..
T Consensus 177 g~~i~ViVGGa~~~~~~a~--~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 177 GFTIPLLIGGATTSKAHTA--VKIEQNYSGPTVYVQ 210 (579)
T ss_dssp TCCSCEEEESTTCCHHHHH--HHTGGGCSSCEEECC
T ss_pred CCCCeEEEEccccchhhhh--hhhhhcccCCeEEEC
Confidence 7788887665555554332 122 8877753
No 136
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=92.71 E-value=1.8 Score=30.40 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=65.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcC-CCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG-AKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~-~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
....|-+.-.++.....+..+|....|.+..+.+.++.+..++.. ..+|++++... +..-..+...|.+.+--.|++
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lLP~v 85 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVVPAI 85 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCCCEE
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCccccEE
Confidence 456788888999999999999987779999999999988888543 47999998751 223567888999988889999
Q ss_pred EEecC
Q 045936 104 GVTSR 108 (145)
Q Consensus 104 ~lt~~ 108 (145)
++...
T Consensus 86 il~~~ 90 (289)
T 1r8j_A 86 VVGDR 90 (289)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 88554
No 137
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=92.39 E-value=1.5 Score=29.13 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCeEEE----ecCHHHHHHHHhcCCCccEEEEeCCCC----CCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 37 MIRRIHSMILKSVGFKVEV----AENGKEAVDLFRTGAKFHIVFIDMEMP----VMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~v~~----~~~~~~~l~~l~~~~~~dlil~d~~~~----~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
.....+...+++.|..+.. ..+..+.++.+.. ...|.|.++.... ...+.+.++.+++..++.|+++-.+-
T Consensus 90 ~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~-~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI 168 (211)
T 3f4w_A 90 LTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE-AGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGI 168 (211)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-HTCCEEEEECCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSC
T ss_pred hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH-cCCCEEEEcCCCcccccCCCCHHHHHHHHHHcCCCcEEEECCC
Confidence 3445666667777866542 2344343343333 2378776652111 11356788888887666777655444
Q ss_pred CChHHHHHHHHhcccEEe-----eCCCCHHHHHHHHHHH
Q 045936 109 NSETEREVFMQAGLDLCY-----TKPLTMAKIVPLLEEL 142 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~l~~~ 142 (145)
+.+....+.+.|++.++ .+.-++.+-.+.+++.
T Consensus 169 -~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~ 206 (211)
T 3f4w_A 169 -SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQV 206 (211)
T ss_dssp -CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHH
T ss_pred -CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHH
Confidence 57788889999999974 4555665555555443
No 138
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=92.30 E-value=1.4 Score=30.83 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCC------ChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 86 GIEATKAMRAMKVESKIVGVTSRN------SETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~lt~~~------~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
++++++.+|+.+.+.|+++++-.. .......+.++|+++++......+++...++.
T Consensus 81 ~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~ 142 (268)
T 1qop_A 81 CFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQA 142 (268)
T ss_dssp HHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHH
Confidence 456788888775678887764221 14567788999999998887777665555443
No 139
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=91.88 E-value=2.4 Score=29.88 Aligned_cols=99 Identities=7% Similarity=0.097 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCeE-EEecCHHHHHHHHhcCCCccEEEEeC-CCCCC-CHHHHHHHHHhhCC-CCcEEEEecCCChH
Q 045936 37 MIRRIHSMILKSVGFKV-EVAENGKEAVDLFRTGAKFHIVFIDM-EMPVM-DGIEATKAMRAMKV-ESKIVGVTSRNSET 112 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~-~~~~~-~g~~~~~~l~~~~~-~~~ii~lt~~~~~~ 112 (145)
.....+....+..|..+ +.+++.+|+.+.+.. .+|+|=++- ++... ..++....|...-| +.++|.-++-..++
T Consensus 156 ~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~--ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 156 DLAKELEDTAFALGMDALIEVHDEAEMERALKL--SSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS--CCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc--CCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 34455555566789774 489999998777654 478776552 22211 12455555555433 67788888888999
Q ss_pred HHHHHHHhcccEEe-----eCCCCHHHHHH
Q 045936 113 EREVFMQAGLDLCY-----TKPLTMAKIVP 137 (145)
Q Consensus 113 ~~~~~~~~g~~~~l-----~kP~~~~~l~~ 137 (145)
....+...|+++++ .++-++.+...
T Consensus 234 dv~~l~~~Ga~gvLVG~almr~~d~~~~~~ 263 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLIGESLMRQHDVAAATR 263 (272)
T ss_dssp HHHHHHTTTCCEEEECHHHHTSSCHHHHHH
T ss_pred HHHHHHHcCCCEEEEcHHHcCCcCHHHHHH
Confidence 99999999999996 45655554433
No 140
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=91.86 E-value=1.1 Score=26.32 Aligned_cols=27 Identities=19% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVE 54 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~ 54 (145)
+|+++.++......+..+++..||.+.
T Consensus 53 kiliisndkqllkemlelisklgykvf 79 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVF 79 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeE
Confidence 577777777777777777777776654
No 141
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=91.78 E-value=1.2 Score=29.56 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=52.8
Q ss_pred HHHhcCCe-EEEecCHHHHHHHH---hcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHh
Q 045936 45 ILKSVGFK-VEVAENGKEAVDLF---RTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQA 120 (145)
Q Consensus 45 ~l~~~g~~-v~~~~~~~~~l~~l---~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ 120 (145)
.|...+.- +....+.+++.+.+ .. ...+++-+.... ..+.+.++.+|+..+.-.++-+....+.+....+.+.
T Consensus 6 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~G~~~iev~~~~--~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~ 82 (205)
T 1wa3_A 6 LFKKHKIVAVLRANSVEEAKEKALAVFE-GGVHLIEITFTV--PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVES 82 (205)
T ss_dssp HHHHHCEEEEECCSSHHHHHHHHHHHHH-TTCCEEEEETTS--TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHH
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHHH-CCCCEEEEeCCC--hhHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHc
Confidence 34444533 33455666554433 33 246777555543 3566778888876542223444444577778888999
Q ss_pred cccEEeeCCCCHHHHHHHH
Q 045936 121 GLDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 121 g~~~~l~kP~~~~~l~~~l 139 (145)
|++.. .-|....++....
T Consensus 83 Gad~i-v~~~~~~~~~~~~ 100 (205)
T 1wa3_A 83 GAEFI-VSPHLDEEISQFC 100 (205)
T ss_dssp TCSEE-ECSSCCHHHHHHH
T ss_pred CCCEE-EcCCCCHHHHHHH
Confidence 99887 5566555554443
No 142
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=91.29 E-value=1.7 Score=28.95 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=52.6
Q ss_pred HHHHhcCCeE-EEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhc
Q 045936 44 MILKSVGFKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAG 121 (145)
Q Consensus 44 ~~l~~~g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g 121 (145)
...+..|..+ ..+.+.+++...... ..|.|.+.- .+..|.+.++.+++..+ +.|+++..+-. .+....++..|
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~--G~d~v~v~~--t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~G 169 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA--GAQALKIFP--SSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDAG 169 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT--TCSEEEETT--HHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHHT
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC--CCCEEEEec--CCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHcC
Confidence 4455567553 257888888777654 489887611 11225677888877655 57887766654 77788888999
Q ss_pred ccEEe
Q 045936 122 LDLCY 126 (145)
Q Consensus 122 ~~~~l 126 (145)
++.+.
T Consensus 170 a~gv~ 174 (212)
T 2v82_A 170 CAGAG 174 (212)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99985
No 143
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=90.88 E-value=1.9 Score=29.55 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCC----CCC-CHHHHHHHHHhhC-CCCcEEEEecCCChH
Q 045936 41 IHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEM----PVM-DGIEATKAMRAMK-VESKIVGVTSRNSET 112 (145)
Q Consensus 41 ~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~----~~~-~g~~~~~~l~~~~-~~~~ii~lt~~~~~~ 112 (145)
.....|+..|+.+. -+.++...+..+.. -++|.|=+|..+ ... ....+++.+.... ....-++..+-.+.+
T Consensus 143 ~~l~~l~~~G~~ialDdfG~g~ssl~~L~~-l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~viaeGVEt~~ 221 (259)
T 3s83_A 143 VILKTLRDAGAGLALDDFGTGFSSLSYLTR-LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVVAEGVENAE 221 (259)
T ss_dssp HHHHHHHHHTCEEEEECC---CHHHHHHHH-SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEEECCCCSHH
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHh-CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEEEEeCCCHH
Confidence 34456677898865 45566667777776 579999998533 121 2334455544421 112234566777888
Q ss_pred HHHHHHHhcccE----EeeCCCCHHHHHHHHHH
Q 045936 113 EREVFMQAGLDL----CYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 113 ~~~~~~~~g~~~----~l~kP~~~~~l~~~l~~ 141 (145)
....+...|++. |+.||.+.+++...++.
T Consensus 222 ~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 222 MAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 888888999865 37899999999887765
No 144
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=90.81 E-value=1.8 Score=30.74 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=48.3
Q ss_pred ccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 72 FHIVFIDMEMPVM--DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 72 ~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.|.+++--+.-.. +-.+.++..|+..|..+|.+ ...+.+....++++|++......++++++...++.+
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeV--Ev~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEV--EVTNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHCTTSCEEE--EESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEE--EeCCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 4666654333221 23457777777777777765 334557788899999999999999999999888764
No 145
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=90.51 E-value=1.5 Score=30.38 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=55.1
Q ss_pred ecCHHHHHHHHhcCCCccEEEEeCCC----CCC-CHHHHHHHHHhhCCCCcEEE-EecCCChHHHHHHHHhcccEEeeCC
Q 045936 56 AENGKEAVDLFRTGAKFHIVFIDMEM----PVM-DGIEATKAMRAMKVESKIVG-VTSRNSETEREVFMQAGLDLCYTKP 129 (145)
Q Consensus 56 ~~~~~~~l~~l~~~~~~dlil~d~~~----~~~-~g~~~~~~l~~~~~~~~ii~-lt~~~~~~~~~~~~~~g~~~~l~kP 129 (145)
+.+.++.++.+.. ...|.+=+|..- |.. -|.++++.||+..|..++-+ +--.........+.++||+.+....
T Consensus 39 ~~~L~~~i~~l~~-~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~ 117 (246)
T 3inp_A 39 LARLGDDVKAVLA-AGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHP 117 (246)
T ss_dssp GGGHHHHHHHHHH-TTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECG
T ss_pred hhhHHHHHHHHHH-cCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEcc
Confidence 3456777777766 346666555422 333 38899999999876677643 3223334467788899999987766
Q ss_pred CCHHHHHHHHHHH
Q 045936 130 LTMAKIVPLLEEL 142 (145)
Q Consensus 130 ~~~~~l~~~l~~~ 142 (145)
...+.+.+.++.+
T Consensus 118 Ea~~~~~~~i~~i 130 (246)
T 3inp_A 118 EASEHIDRSLQLI 130 (246)
T ss_dssp GGCSCHHHHHHHH
T ss_pred ccchhHHHHHHHH
Confidence 5445555555544
No 146
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=90.25 E-value=0.78 Score=32.24 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=38.9
Q ss_pred HHHHHHHHhhCCCCcEEEEecCC------ChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRN------SETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~------~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
+++++.+|+....+|+++++-.. -......+.++|+++++...+..++....++.
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~ 143 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKA 143 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH
Confidence 67777777765788988775322 24567888999999998877777765554443
No 147
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=89.94 E-value=1.3 Score=31.19 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhCCCCcEEEEec------CCChHHHHHHHHhcccEEeeCCCCHHHHHHHHH
Q 045936 86 GIEATKAMRAMKVESKIVGVTS------RNSETEREVFMQAGLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~lt~------~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~ 140 (145)
.++.++.+|+.++.+|+++++- +.-......+.++|+++++..-+.+++.....+
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~ 144 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVA 144 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Confidence 4567778877767889988752 223456788899999998887676666544433
No 148
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=89.41 E-value=2 Score=31.24 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=57.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe----------EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK----------VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA 95 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~----------v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~ 95 (145)
..+++|+.+.+.....++..+++.|.. +......++....+. ..|++++-......-|..+++.+
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~---~aDv~vl~ss~~e~gg~~~lEAm-- 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP---VGKIAIVGGTFVNIGGHNLLEPT-- 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG---GEEEEEECSSSSSSCCCCCHHHH--
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH---hCCEEEECCcccCCCCcCHHHHH--
Confidence 456777777776555667777666643 222222233333332 36887664332221122233332
Q ss_pred hCCCCcEEEEecCCC-hHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 96 MKVESKIVGVTSRNS-ETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 96 ~~~~~~ii~lt~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
...+|+|.-+...+ .+........| ++..+-+.++|..++.++++
T Consensus 300 -A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~ 345 (374)
T 2xci_A 300 -CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLS 345 (374)
T ss_dssp -TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHH
T ss_pred -HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHh
Confidence 33677764222222 23232222333 45667789999999988764
No 149
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=89.21 E-value=0.21 Score=35.00 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=46.4
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhcCCeEEEecCHHH--HHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHhh-CCCC
Q 045936 27 YFALVVDDD--PMIRRIHSMILKSVGFKVEVAENGKE--AVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRAM-KVES 100 (145)
Q Consensus 27 ~~vlii~~~--~~~~~~l~~~l~~~g~~v~~~~~~~~--~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~~-~~~~ 100 (145)
.+|||++++ +.....+...|+..||.|...+..+- -...+. .+|+||++.... ..+. +.++.|++. ....
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~---~yDvIIl~d~~~~~l~~-~~~~~L~~yV~~GG 80 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA---KQDLVILSDYPAERMTA-QAIDQLVTMVKAGC 80 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH---TCSEEEEESCCGGGBCH-HHHHHHHHHHHTTC
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh---cCCEEEEcCCccccCCH-HHHHHHHHHHHhCC
Confidence 479999988 66778899999999999876553221 112232 499888763111 1222 333344332 2356
Q ss_pred cEEEEecCC
Q 045936 101 KIVGVTSRN 109 (145)
Q Consensus 101 ~ii~lt~~~ 109 (145)
.+|++.+..
T Consensus 81 gLi~~gG~~ 89 (259)
T 3rht_A 81 GLVMLGGWE 89 (259)
T ss_dssp EEEEECSTT
T ss_pred eEEEecCcc
Confidence 677775543
No 150
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=89.15 E-value=3.1 Score=31.84 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 59 GKEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 59 ~~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+.+...+.. .+|+|.+|...+... ..+.++.+++..|..|+++ .+....+....+.++|++.+..
T Consensus 233 ~~~a~~l~~a--G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVEA--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhc--cCceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 4444444543 489999998876543 4578999999888777765 4556677888899999999864
No 151
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=88.78 E-value=3.4 Score=30.77 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=51.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
..|+++|.++.....++ ..|+.+...+ +-.+.+..+.- ...+++++-+.- +.....++..+++.+|..+|++-
T Consensus 28 ~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~agi-~~A~~viv~~~~-~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 28 VKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGA-AKAEVLINAIDD-PQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp CCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTTT-TTCSEEEECCSS-HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcCC-CccCEEEECCCC-hHHHHHHHHHHHHhCCCCeEEEE
Confidence 34555555554443322 2344433222 11223333222 246777775532 22345567777888888777765
Q ss_pred ecCCChHHHHHHHHhcccEEee
Q 045936 106 TSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 106 t~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+. +......+...|++..+.
T Consensus 102 a~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 102 AR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp ES--SHHHHHHHHHTTCSSCEE
T ss_pred EC--CHHHHHHHHHCCCCEEEC
Confidence 54 456677788999998764
No 152
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=88.61 E-value=1.6 Score=34.57 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEEEEecCC-Ch-H
Q 045936 40 RIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKVESKIVGVTSRN-SE-T 112 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii~lt~~~-~~-~ 112 (145)
..+...|...||.|.. ..+ ++.++...+ ..+|+|.+...+... ...++++.|++... ..| ++.+.. +. +
T Consensus 528 ~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e-~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~-~~V-~vgG~P~~d~~ 603 (637)
T 1req_B 528 GFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKK-SGAQVADLCSSAKVYAQQGLEVAKALKAAGA-KAL-YLSGAFKEFGD 603 (637)
T ss_dssp HHHHHHHHHTTCBCCEEECCCH-HHHHHHHHH-HTCSEEEEECCHHHHHHHHHHHHHHHHHTTC-SEE-EEESCGGGGGG
T ss_pred HHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHh-cCCCEEEEecccHHHHHHHHHHHHHHHhCCC-CeE-EEeCCCCccch
Confidence 4566788888998763 234 777777765 468988776544322 23568888888765 334 455432 21 1
Q ss_pred HHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 113 EREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 113 ~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
....+.+ |+++|+.--.+..++...+.+-
T Consensus 604 ~~~~~~~-G~D~~~~~g~~~~~~l~~l~~~ 632 (637)
T 1req_B 604 DAAEAEK-LIDGRLFMGMDVVDTLSSTLDI 632 (637)
T ss_dssp GHHHHHH-HCCCEECTTCCHHHHHHHHHHH
T ss_pred hhHHHHh-ccceEecCCcCHHHHHHHHHHH
Confidence 2345556 9999998887777776666443
No 153
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=88.56 E-value=2.9 Score=25.73 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=33.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 71 KFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 71 ~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
..|++++-..-+ .....++..+++..+..++++.+. +.+....+.+.|++..+.
T Consensus 71 ~ad~vi~~~~~~-~~n~~~~~~a~~~~~~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 71 CAKWLILTIPNG-YEAGEIVASARAKNPDIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp GCSEEEECCSCH-HHHHHHHHHHHHHCSSSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred cCCEEEEECCCh-HHHHHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 357676544221 122335566777777777665543 555667778899998764
No 154
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=87.88 E-value=4.8 Score=27.38 Aligned_cols=52 Identities=17% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCC------hHHHHHHHHhcccEEeeCCCCHHHHHHH
Q 045936 86 GIEATKAMRAMKVESKIVGVTSRNS------ETEREVFMQAGLDLCYTKPLTMAKIVPL 138 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~lt~~~~------~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 138 (145)
+.++++.+++.. +.|+.+++.... ......+.+.|++.++......++....
T Consensus 68 ~~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~ 125 (248)
T 1geq_A 68 AFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEF 125 (248)
T ss_dssp HHHHHHHHHTTC-CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHH
T ss_pred HHHHHHHHHhhC-CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHH
Confidence 467888888764 567776653222 4677888999999988766555544433
No 155
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=87.69 E-value=6.1 Score=28.33 Aligned_cols=107 Identities=10% Similarity=-0.042 Sum_probs=58.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
..+++++++.+. ..++..++...-.+. ..-+.++....+.. .|++++-......-|..+++.+.. ++|+|
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~---adv~v~ps~~~e~~~~~~~Ea~a~---G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS---ADVYCAPHLGGESFGIVLVEAMAA---GTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH---SSEEEECCCSCCSSCHHHHHHHHH---TCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH---CCEEEecCCCCCCCchHHHHHHHc---CCCEE
Confidence 345566665544 444444433211122 22233444444443 477776532122334455555433 45655
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.. .. .........|..+++..|-+.+++...|.++++
T Consensus 312 ~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 312 AS-DL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp EC-CC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred Ee-cC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 32 22 344556677788899999999999999988764
No 156
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=87.37 E-value=4.9 Score=26.88 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=50.0
Q ss_pred CCeE-EEecCHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhc
Q 045936 50 GFKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMPV-------MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAG 121 (145)
Q Consensus 50 g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~~-------~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g 121 (145)
|..+ ..+.+.+++...... ..|.|+++...+. ..+++.++.+++.. .+|+++..+- +.+....++..|
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~--gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~-~~pvia~GGI-~~~nv~~~~~~G 185 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE--DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI-SIPVIAIGGM-TPDRLRDVKQAG 185 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT--TCSEEEEECCC----------CHHHHHHHHHHHC-CSCEEEESSC-CGGGHHHHHHTT
T ss_pred CCEEEEEcCCHHHHHHHHhC--CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcC
Confidence 4433 367788888776654 4899988764332 13567777776644 6788776666 788888999999
Q ss_pred ccEEe
Q 045936 122 LDLCY 126 (145)
Q Consensus 122 ~~~~l 126 (145)
++.+.
T Consensus 186 a~gv~ 190 (221)
T 1yad_A 186 ADGIA 190 (221)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99864
No 157
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=87.04 E-value=3 Score=28.44 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCC-eEEEecCHHHHHH---HHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHH
Q 045936 40 RIHSMILKSVGF-KVEVAENGKEAVD---LFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETERE 115 (145)
Q Consensus 40 ~~l~~~l~~~g~-~v~~~~~~~~~l~---~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~ 115 (145)
..+...|.+.+. .|....+.++++. .+..+ ..+++=+.. ...++.+.++.+++.++...+- .....+.+...
T Consensus 17 ~~~~~~l~~~~ii~V~r~~~~~~~~~~~~al~~g-Gv~~iel~~--k~~~~~~~i~~l~~~~~~~~ig-agtvl~~d~~~ 92 (225)
T 1mxs_A 17 ARIDAICEKARILPVITIAREEDILPLADALAAG-GIRTLEVTL--RSQHGLKAIQVLREQRPELCVG-AGTVLDRSMFA 92 (225)
T ss_dssp HHHHHHHHHHSEEEEECCSCGGGHHHHHHHHHHT-TCCEEEEES--SSTHHHHHHHHHHHHCTTSEEE-EECCCSHHHHH
T ss_pred HHHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHHC-CCCEEEEec--CCccHHHHHHHHHHhCcccEEe-eCeEeeHHHHH
Confidence 344455666663 3545555555443 34443 467665554 4456788899888887755433 33345678888
Q ss_pred HHHHhcccEEeeCCCCHHHHHH
Q 045936 116 VFMQAGLDLCYTKPLTMAKIVP 137 (145)
Q Consensus 116 ~~~~~g~~~~l~kP~~~~~l~~ 137 (145)
.++..||+..+. |-+..++..
T Consensus 93 ~A~~aGAd~v~~-p~~d~~v~~ 113 (225)
T 1mxs_A 93 AVEAAGAQFVVT-PGITEDILE 113 (225)
T ss_dssp HHHHHTCSSEEC-SSCCHHHHH
T ss_pred HHHHCCCCEEEe-CCCCHHHHH
Confidence 899999988765 444444433
No 158
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=87.03 E-value=4.7 Score=29.64 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+.++.+.+ ..+|+|.+|....... -.+.++.+++..|+.++++ ......+....+.++|++.+..
T Consensus 110 ~~~~~~lie-aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~-G~v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVE-AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHH-TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh-CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEe-eeeCCHHHHHHHHHcCCCEEEE
Confidence 344444444 3589999986543322 3567888888877777654 3445677788889999998766
No 159
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=86.99 E-value=2.9 Score=29.88 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=48.7
Q ss_pred ccEEEEeCCC-C-CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 72 FHIVFIDMEM-P-VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 72 ~dlil~d~~~-~-~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.|.|++.-+. . -.+-.+.++..|+..|..+|.+-.. +.+....++++|++-.+.-.++++++...++.+
T Consensus 178 ~D~vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 178 CDGVLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp TSCEEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred cceEEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 4656654322 1 1123457777887777777765443 457888899999999999999999999988754
No 160
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=86.78 E-value=3.2 Score=32.25 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=43.4
Q ss_pred CccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 71 KFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 71 ~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..|++++|....... -++.++++++.+|+.+|+ ..+....+....+.++||+..-
T Consensus 293 GvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~vi-aGNVaT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 293 GLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVI-AGNVVTREQAAQLIAAGADGLR 348 (556)
T ss_dssp TCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEE
T ss_pred CCcEEEEeccccccHHHHHHHHHHHhhCCcceEE-eccccCHHHHHHHHHcCCCEEe
Confidence 489999998765543 568999999999888765 5566677778888899999863
No 161
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=86.72 E-value=4.9 Score=30.68 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+..+.+.. ..+|+|.+|...+... -.+.++.+++..|..|+++ .+....+....+.++|++.+..
T Consensus 231 ~~~a~~l~~-aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 231 GERVAALVA-AGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHH-TTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhh-cccceEEecccCCcchhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 344444444 3589999998766543 4578999998887777765 4456777888899999999865
No 162
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=86.66 E-value=1.6 Score=30.82 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCcEEEEEeC-----CHHHHHHHHHHHHhcC-CeEEEecCHH-----HHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHH
Q 045936 25 RPYFALVVDD-----DPMIRRIHSMILKSVG-FKVEVAENGK-----EAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAM 93 (145)
Q Consensus 25 ~~~~vlii~~-----~~~~~~~l~~~l~~~g-~~v~~~~~~~-----~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l 93 (145)
++.+|||+.. -+.....|..+|++.| |.|....+.. +.+.. .- ..+|+||++......+... .+.+
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~-~L-~~~D~vV~~~~~~~l~~~~-~~~l 79 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVL-DF-SPYQLVVLDYNGDSWPEET-NRRF 79 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCC-CC-TTCSEEEECCCSSCCCHHH-HHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhh-hh-hcCCEEEEeCCCCcCCHHH-HHHH
Confidence 4678999876 3566688999999888 9988766531 22211 11 3599999887644433322 2222
Q ss_pred Hh-hCCCCcEEEEec
Q 045936 94 RA-MKVESKIVGVTS 107 (145)
Q Consensus 94 ~~-~~~~~~ii~lt~ 107 (145)
.+ -.....++.+-+
T Consensus 80 ~~yV~~Ggglv~~H~ 94 (281)
T 4e5v_A 80 LEYVQNGGGVVIYHA 94 (281)
T ss_dssp HHHHHTTCEEEEEGG
T ss_pred HHHHHcCCCEEEEec
Confidence 22 223677887743
No 163
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=86.61 E-value=2.7 Score=29.50 Aligned_cols=76 Identities=21% Similarity=0.169 Sum_probs=48.7
Q ss_pred HHHHHhcCCCccEEEEeCCCCC-------------------C---CHHHHHHHHHhhCCCCcEEEEecC------CChHH
Q 045936 62 AVDLFRTGAKFHIVFIDMEMPV-------------------M---DGIEATKAMRAMKVESKIVGVTSR------NSETE 113 (145)
Q Consensus 62 ~l~~l~~~~~~dlil~d~~~~~-------------------~---~g~~~~~~l~~~~~~~~ii~lt~~------~~~~~ 113 (145)
.++.+.+ . .|+|.++.-..+ . ..++.++.+|+. ++.|+++++-. .....
T Consensus 35 ~~~~l~~-~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~-~~~Pii~m~y~n~v~~~g~~~f 111 (271)
T 1ujp_A 35 AVEEVLP-Y-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL-TEKPLFLMTYLNPVLAWGPERF 111 (271)
T ss_dssp HHHHHGG-G-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CCSCEEEECCHHHHHHHCHHHH
T ss_pred HHHHHHh-c-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCEEEEecCcHHHHhhHHHH
Confidence 4444555 4 888888764321 1 135677888877 67899886321 12345
Q ss_pred HHHHHHhcccEEeeCCCCHHHHHHHHH
Q 045936 114 REVFMQAGLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 114 ~~~~~~~g~~~~l~kP~~~~~l~~~l~ 140 (145)
...+.++|+++++.--+..++....++
T Consensus 112 ~~~~~~aG~dGviv~Dl~~ee~~~~~~ 138 (271)
T 1ujp_A 112 FGLFKQAGATGVILPDLPPDEDPGLVR 138 (271)
T ss_dssp HHHHHHHTCCEEECTTCCGGGCHHHHH
T ss_pred HHHHHHcCCCEEEecCCCHHHHHHHHH
Confidence 677889999999877666665554443
No 164
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=86.33 E-value=1 Score=29.92 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCcEEE--EecCCChHHHHHHHHhcccEEeeCCCCH
Q 045936 86 GIEATKAMRAMKVESKIVG--VTSRNSETEREVFMQAGLDLCYTKPLTM 132 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~--lt~~~~~~~~~~~~~~g~~~~l~kP~~~ 132 (145)
|.++++.|++..++.|+++ ....-.......+.+.|++.+...+...
T Consensus 40 g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 40 GLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp CTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCC
Confidence 4567777777665666653 2221123346677888888776555544
No 165
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=86.32 E-value=7 Score=27.66 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=59.8
Q ss_pred EEEEeCCHHHHH----HHHHHHHhcCC--eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 29 ALVVDDDPMIRR----IHSMILKSVGF--KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 29 vlii~~~~~~~~----~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
+|+-|++-.... .++..-+..++ ..+.+.+.+++.+.+.. ..|+|++|-. ....-.+.++.++..+++. .
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a--GaD~I~LDn~-~~~~~~~~v~~l~~~~~~v-~ 243 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE--KPELILLDNF-AVWQTQTAVQRRDSRAPTV-M 243 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG--CCSEEEEETC-CHHHHHHHHHHHHHHCTTC-E
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHHhhccCCCe-E
Confidence 666666543322 23332222332 24478899999998876 3899999963 3223334566666544444 4
Q ss_pred EEEecCCChHHHHHHHHhcccEEe
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+..++.-+.+.+......|++.+-
T Consensus 244 ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 244 LESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EEEESSCCTTTHHHHHHTTCSEEE
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 557777888889999999998874
No 166
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=86.13 E-value=5.2 Score=26.96 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=47.1
Q ss_pred HHHHhcCC-eEEEecCHHHHHH---HHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHH
Q 045936 44 MILKSVGF-KVEVAENGKEAVD---LFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQ 119 (145)
Q Consensus 44 ~~l~~~g~-~v~~~~~~~~~l~---~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~ 119 (145)
..|.+.+. .|....+.++++. .+..+ ..+++=+.. ...++.+.++.+++.++... +-...-.+.+....++.
T Consensus 11 ~~l~~~~~i~v~r~~~~~~~~~~~~al~~g-Gv~~iel~~--k~~~~~~~i~~l~~~~~~~~-vgagtvi~~d~~~~A~~ 86 (214)
T 1wbh_A 11 SILTTGPVVPVIVVKKLEHAVPMAKALVAG-GVRVLNVTL--RTECAVDAIRAIAKEVPEAI-VGAGTVLNPQQLAEVTE 86 (214)
T ss_dssp HHHHSCSEEEEECCSSGGGHHHHHHHHHHT-TCCEEEEES--CSTTHHHHHHHHHHHCTTSE-EEEESCCSHHHHHHHHH
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHc-CCCEEEEeC--CChhHHHHHHHHHHHCcCCE-EeeCEEEEHHHHHHHHH
Confidence 33444452 2334444444333 33332 356555443 34567778887877766433 22333556677888888
Q ss_pred hcccEEeeCCCCHHHH
Q 045936 120 AGLDLCYTKPLTMAKI 135 (145)
Q Consensus 120 ~g~~~~l~kP~~~~~l 135 (145)
.||+..+.. -+..++
T Consensus 87 aGAd~v~~p-~~d~~v 101 (214)
T 1wbh_A 87 AGAQFAISP-GLTEPL 101 (214)
T ss_dssp HTCSCEEES-SCCHHH
T ss_pred cCCCEEEcC-CCCHHH
Confidence 888876554 333333
No 167
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=86.08 E-value=5 Score=29.46 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=44.3
Q ss_pred HHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 61 EAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 61 ~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+.++.+.+ ..+|+|.+|....... -.+.++++++..+..+|++ .+....+....+.++|+|....
T Consensus 103 e~~~~a~~-aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 103 QRAEALRD-AGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHH-TTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHH-cCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHHcCCCEEEE
Confidence 34444444 3489999987654322 3568888988777777765 2345667788899999999874
No 168
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.69 E-value=3.1 Score=27.77 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=46.4
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCC--------CCHHHHHHHHHhhC-CCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPV--------MDGIEATKAMRAMK-VESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~--------~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
.+.+.+++.... . ..|.+.++.-.+. .-|++.++.++... ...|++.+.+-. ++....++..|++++
T Consensus 94 s~~t~~e~~~A~-~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gV 169 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGA 169 (210)
T ss_dssp EECSHHHHHTTG-G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEE
T ss_pred ecCCHHHHHHHh-h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEE
Confidence 677888876654 4 3798887654332 12567778777653 578988776654 677888889999886
No 169
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=85.57 E-value=5.7 Score=30.51 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCCCH-HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVMDG-IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~~g-~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+.+..+.+ ..+|++.+|...+...+ .+.++++++.+++.++++ ......+....+.++|++.+..
T Consensus 258 ~era~aLve-aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~-g~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 258 MTRIDALVK-ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIA-GNVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp HHHHHHHHH-TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh-hccceEEecccccchhhhhhHHHHHHHhCCCceEEe-eeeccHHHHHHHHHhCCCEEEE
Confidence 344444444 35899999987765544 468999999887777763 4555777888899999998764
No 170
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=85.46 E-value=6.1 Score=26.17 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=68.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhc-CCCccEEEEe----------CCCC----CCCHHHHH
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRT-GAKFHIVFID----------MEMP----VMDGIEAT 90 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~-~~~~dlil~d----------~~~~----~~~g~~~~ 90 (145)
.+++++-..+.+....+.+..+.+.++. ...+.++++...+. ...+|++|.- .+.| ..+|++++
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Dil 84 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDTM 84 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHH
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHHH
Confidence 4788888889999999998887765543 55677877776543 3457887732 1222 35677777
Q ss_pred HHHHhhC-CCCcEEEEecCCCh---HHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 91 KAMRAMK-VESKIVGVTSRNSE---TEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 91 ~~l~~~~-~~~~ii~lt~~~~~---~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+.|.... ...+|-+++-.... ......+ |.+-......+.+++...++++.
T Consensus 85 ~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll--~~~i~~~~~~~~~e~~~~i~~l~ 139 (196)
T 2q5c_A 85 RAVYNAKRFGNELALIAYKHSIVDKHEIEAML--GVKIKEFLFSSEDEITTLISKVK 139 (196)
T ss_dssp HHHHHHGGGCSEEEEEEESSCSSCHHHHHHHH--TCEEEEEEECSGGGHHHHHHHHH
T ss_pred HHHHHHHhhCCcEEEEeCcchhhHHHHHHHHh--CCceEEEEeCCHHHHHHHHHHHH
Confidence 7776642 23344444332222 2233333 44333333455677777776654
No 171
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=85.34 E-value=6.8 Score=26.61 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=55.8
Q ss_pred HHHHHHhcCC-eEEEecCHHHHHH---HHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHH
Q 045936 42 HSMILKSVGF-KVEVAENGKEAVD---LFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVF 117 (145)
Q Consensus 42 l~~~l~~~g~-~v~~~~~~~~~l~---~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~ 117 (145)
+...|...+. .|....+.++++. .+..+ ..+++=+.. ...++.+.++.+++..+...+ -.....+.+....+
T Consensus 10 ~~~~l~~~~ii~vir~~~~~~~~~~~~al~~g-Gv~~iel~~--k~~~~~~~i~~l~~~~~~l~v-gaGtvl~~d~~~~A 85 (224)
T 1vhc_A 10 IIEKLRELKIVPVIALDNADDILPLADTLAKN-GLSVAEITF--RSEAAADAIRLLRANRPDFLI-AAGTVLTAEQVVLA 85 (224)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHT-TCCEEEEET--TSTTHHHHHHHHHHHCTTCEE-EEESCCSHHHHHHH
T ss_pred HHHHHHHCCeEEEEeCCCHHHHHHHHHHHHHc-CCCEEEEec--cCchHHHHHHHHHHhCcCcEE-eeCcEeeHHHHHHH
Confidence 3345555663 3445555555543 33342 367665554 455788899988888765433 23334467888899
Q ss_pred HHhcccEEeeCCCCHHHHHHHH
Q 045936 118 MQAGLDLCYTKPLTMAKIVPLL 139 (145)
Q Consensus 118 ~~~g~~~~l~kP~~~~~l~~~l 139 (145)
+..||+..+. |.+..++....
T Consensus 86 ~~aGAd~v~~-p~~d~~v~~~a 106 (224)
T 1vhc_A 86 KSSGADFVVT-PGLNPKIVKLC 106 (224)
T ss_dssp HHHTCSEEEC-SSCCHHHHHHH
T ss_pred HHCCCCEEEE-CCCCHHHHHHH
Confidence 9999988765 44444444333
No 172
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=84.84 E-value=7.9 Score=26.95 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=61.4
Q ss_pred HHHHHHhcCC---eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC-CCCcEEEEecCCChHHHHHH
Q 045936 42 HSMILKSVGF---KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK-VESKIVGVTSRNSETEREVF 117 (145)
Q Consensus 42 l~~~l~~~g~---~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~ 117 (145)
++..|.. |. .++..-...+.++.+.. ..+|.+++|+.....+..++...++... ...++++=+...++..+..+
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~-~GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~ 86 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAAT-SGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQV 86 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHT-TCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 4455543 43 23333333444444444 4599999998766555555555555432 24555555666778888889
Q ss_pred HHhcccEE-eeCCCCHHHHHHHHHHH
Q 045936 118 MQAGLDLC-YTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 118 ~~~g~~~~-l~kP~~~~~l~~~l~~~ 142 (145)
++.|++.. ++|--+.+++...++.+
T Consensus 87 l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 87 LDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp HHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred HHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 99999885 56677788877766543
No 173
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=84.67 E-value=8.5 Score=27.18 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=56.3
Q ss_pred ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC-CCCcEEEEecCCChHHHHHHHHhcccEE-eeCCCCHH
Q 045936 56 AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK-VESKIVGVTSRNSETEREVFMQAGLDLC-YTKPLTMA 133 (145)
Q Consensus 56 ~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~g~~~~-l~kP~~~~ 133 (145)
..+.+.+ +.+.. ..+|.+++|+.-...+--++...++... ...++++=+...++..+..+++.|++.. ++|--+.+
T Consensus 47 ~~~p~~~-e~a~~-~GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~sae 124 (287)
T 2v5j_A 47 LSSSYSA-ELLAG-AGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNAD 124 (287)
T ss_dssp SCCHHHH-HHHHT-SCCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHH
T ss_pred CCCHHHH-HHHHh-CCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHH
Confidence 3444444 44444 3599999998766555555555555432 2455665577777888888999999886 56677788
Q ss_pred HHHHHHHH
Q 045936 134 KIVPLLEE 141 (145)
Q Consensus 134 ~l~~~l~~ 141 (145)
++...++.
T Consensus 125 ea~~~~~~ 132 (287)
T 2v5j_A 125 EAREAVRA 132 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 174
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=84.60 E-value=6.8 Score=26.24 Aligned_cols=76 Identities=11% Similarity=0.171 Sum_probs=49.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe---EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK---VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVES 100 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~---v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~ 100 (145)
..+|..+|-++......+..++..|+. +. ...+..+.+..+.. ..||+|++|.... .-.++++.+.+. .|+
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~-~~fD~V~~d~~~~--~~~~~l~~~~~~LkpG- 156 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN-DSYQLVFGQVSPM--DLKALVDAAWPLLRRG- 156 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT-TCEEEEEECCCTT--THHHHHHHHHHHEEEE-
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC-CCcCeEEEcCcHH--HHHHHHHHHHHHcCCC-
Confidence 358999999999999999999887754 54 45566665544323 4699999997533 333455555443 333
Q ss_pred cEEEE
Q 045936 101 KIVGV 105 (145)
Q Consensus 101 ~ii~l 105 (145)
.++++
T Consensus 157 G~lv~ 161 (221)
T 3dr5_A 157 GALVL 161 (221)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 34444
No 175
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=84.50 E-value=4.6 Score=26.87 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=41.7
Q ss_pred ccEEEEeCCCCCCCH-------HHHHHHHHhhC----CCCcEEEEecCCChHHHHHHHHhcccEEe-----eCCCCHHHH
Q 045936 72 FHIVFIDMEMPVMDG-------IEATKAMRAMK----VESKIVGVTSRNSETEREVFMQAGLDLCY-----TKPLTMAKI 135 (145)
Q Consensus 72 ~dlil~d~~~~~~~g-------~~~~~~l~~~~----~~~~ii~lt~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l 135 (145)
.|.++++...++.+| ++-++.+++.. .+.|++ ++..-+++....+.+.|++.+. .+.-++.+-
T Consensus 132 ~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~-v~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~a 210 (220)
T 2fli_A 132 VDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIE-VDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQ 210 (220)
T ss_dssp CSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEE-EESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHH
T ss_pred CCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEE-EECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHH
Confidence 688877665544332 34455555532 245655 4455556777778888999874 445556665
Q ss_pred HHHHHHH
Q 045936 136 VPLLEEL 142 (145)
Q Consensus 136 ~~~l~~~ 142 (145)
.+.+++.
T Consensus 211 ~~~~~~~ 217 (220)
T 2fli_A 211 VQTLRTA 217 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 176
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=84.32 E-value=5.7 Score=26.13 Aligned_cols=75 Identities=17% Similarity=0.044 Sum_probs=46.9
Q ss_pred HhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 47 KSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 47 ~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
++.|..+. .+.+..++...+.. ..|++-+... ...|.+.++.++...++.|++...+- +.+....++..|++.+
T Consensus 101 ~~~g~~vi~g~~t~~e~~~a~~~--Gad~vk~~~~--~~~g~~~~~~l~~~~~~~pvia~GGI-~~~~~~~~~~~Ga~~v 175 (205)
T 1wa3_A 101 KEKGVFYMPGVMTPTELVKAMKL--GHTILKLFPG--EVVGPQFVKAMKGPFPNVKFVPTGGV-NLDNVCEWFKAGVLAV 175 (205)
T ss_dssp HHHTCEEECEECSHHHHHHHHHT--TCCEEEETTH--HHHHHHHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHHHTCSCE
T ss_pred HHcCCcEECCcCCHHHHHHHHHc--CCCEEEEcCc--cccCHHHHHHHHHhCCCCcEEEcCCC-CHHHHHHHHHCCCCEE
Confidence 33444333 33467777666654 3676654311 11367788888776667777766555 4667888999999887
Q ss_pred e
Q 045936 126 Y 126 (145)
Q Consensus 126 l 126 (145)
.
T Consensus 176 ~ 176 (205)
T 1wa3_A 176 G 176 (205)
T ss_dssp E
T ss_pred E
Confidence 4
No 177
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=83.82 E-value=4.8 Score=29.05 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=41.8
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+.++..++..|..+|.+.... .+....++..|++......++++.+...++.+
T Consensus 219 ~~Av~~ar~~~p~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~l 272 (320)
T 3paj_A 219 RQAISTAKQLNPGKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKIN 272 (320)
T ss_dssp HHHHHHHHHHSTTSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4567777887777777665443 35677888999999999999999999888654
No 178
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=83.79 E-value=8.6 Score=26.54 Aligned_cols=99 Identities=13% Similarity=0.002 Sum_probs=60.6
Q ss_pred HHHHHHhcC--CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEEEEecCCChHHHHHHH
Q 045936 42 HSMILKSVG--FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVESKIVGVTSRNSETEREVFM 118 (145)
Q Consensus 42 l~~~l~~~g--~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~~~ 118 (145)
++..|.... +.++.+-+..+.++.+.. ..+|.+++|+.-...+--+....++.. ....++++=+...++..+..++
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~-~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~l 88 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGL-AGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLL 88 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTT-SCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHH
Confidence 455554422 233433334444455544 459999999876544444444444432 2235565556777788888899
Q ss_pred HhcccEE-eeCCCCHHHHHHHHHH
Q 045936 119 QAGLDLC-YTKPLTMAKIVPLLEE 141 (145)
Q Consensus 119 ~~g~~~~-l~kP~~~~~l~~~l~~ 141 (145)
+.|++++ ++|--+.+++...++.
T Consensus 89 ~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 89 DIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HTTCCEEEESCCCSHHHHHHHHHT
T ss_pred hcCCceeeecCcCCHHHHHHHHHH
Confidence 9999885 5677788888766543
No 179
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=83.77 E-value=8.8 Score=26.64 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=48.9
Q ss_pred CCeEE--EecCHHHHHHHHhcCCCccEEEE-eCCCC---CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhccc
Q 045936 50 GFKVE--VAENGKEAVDLFRTGAKFHIVFI-DMEMP---VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLD 123 (145)
Q Consensus 50 g~~v~--~~~~~~~~l~~l~~~~~~dlil~-d~~~~---~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~ 123 (145)
|+.+. .+.+.+++.+.... ..|.|+. ..... +..+.+.++.+++. .+.|+++..+-.+++....++..|++
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~--gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~-~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL--GVHAIMPGASPIGSGQGILNPLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH--TCSCBEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHHh--CCCEEEECCcccCCCCCCCCHHHHHHHHhc-CCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 76654 55677666555544 3565532 11111 12246788888874 47899888888788999999999999
Q ss_pred EEe
Q 045936 124 LCY 126 (145)
Q Consensus 124 ~~l 126 (145)
.++
T Consensus 203 gVi 205 (264)
T 1xm3_A 203 GVL 205 (264)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 180
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=83.68 E-value=7.7 Score=25.89 Aligned_cols=91 Identities=9% Similarity=0.028 Sum_probs=61.2
Q ss_pred HHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCC-CC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcc
Q 045936 46 LKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPV-MD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGL 122 (145)
Q Consensus 46 l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~-~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~ 122 (145)
.+..|..+. -+.+.+++.+..+. ..|.+-+ .|. .- |.+.++.++...++.|++.+.+ -+.+.....+..|+
T Consensus 100 ~~~~g~~~i~G~~t~~e~~~A~~~--Gad~v~~---fpa~~~gG~~~lk~l~~~~~~ipvvaiGG-I~~~n~~~~l~aGa 173 (207)
T 2yw3_A 100 AQARGVPYLPGVLTPTEVERALAL--GLSALKF---FPAEPFQGVRVLRAYAEVFPEVRFLPTGG-IKEEHLPHYAALPN 173 (207)
T ss_dssp HHHHTCCEEEEECSHHHHHHHHHT--TCCEEEE---TTTTTTTHHHHHHHHHHHCTTCEEEEBSS-CCGGGHHHHHTCSS
T ss_pred HHHhCCCEEecCCCHHHHHHHHHC--CCCEEEE---ecCccccCHHHHHHHHhhCCCCcEEEeCC-CCHHHHHHHHhCCC
Confidence 333554433 57889999888765 3787765 333 22 8889999998887888876554 45678888999998
Q ss_pred cEEe-----eCCCCHHHHHHHHHHHh
Q 045936 123 DLCY-----TKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 123 ~~~l-----~kP~~~~~l~~~l~~~~ 143 (145)
+.+. .+ -+++++....+++.
T Consensus 174 ~~vavgSai~~-~d~~~i~~~a~~~~ 198 (207)
T 2yw3_A 174 LLAVGGSWLLQ-GNLEAVRAKVRAAK 198 (207)
T ss_dssp BSCEEESGGGS-SCHHHHHHHHHHHH
T ss_pred cEEEEehhhhC-CCHHHHHHHHHHHH
Confidence 7753 33 45555666655543
No 181
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=83.61 E-value=4.3 Score=27.10 Aligned_cols=45 Identities=11% Similarity=0.013 Sum_probs=29.2
Q ss_pred CCccEEEEeCC-----CCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHH
Q 045936 70 AKFHIVFIDME-----MPVMDGIEATKAMRAMKVESKIVGVTSRNSETER 114 (145)
Q Consensus 70 ~~~dlil~d~~-----~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~ 114 (145)
..+|+||+|-- +.-.+.-++++.|...+...-+|+.+....++.+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 46999999953 2335566788888877666666654444444433
No 182
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=83.43 E-value=7.5 Score=25.57 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=47.4
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCCC-------CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMPV-------MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~~-------~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+.+.+++...... .+|.++++.-.+. ..+++.++.+++.. ..|+++..+-. .+....++..|++.+.
T Consensus 114 ~~~t~~e~~~~~~~--g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 114 SVYSLEEALEAEKK--GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV-KIPVVAIGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp EESSHHHHHHHHHH--TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC-SSCEEEESSCC-TTTHHHHHTTTCSEEE
T ss_pred ecCCHHHHHHHHhc--CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC-CCCEEEECCcC-HHHHHHHHHcCCCEEE
Confidence 56788887665544 4899988753332 34778888887654 67877665554 7777788889999874
No 183
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=83.27 E-value=5 Score=23.45 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=63.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcC-CCcc--EEEEeCCCCCCC-HHHHHHHHHhhCCCCcEE
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG-AKFH--IVFIDMEMPVMD-GIEATKAMRAMKVESKIV 103 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~-~~~d--lil~d~~~~~~~-g~~~~~~l~~~~~~~~ii 103 (145)
-+++...+......++.+++.+||.+.++.+..+.-..+..- ..|. ++++- ..+.. +-..++..++.+...-||
T Consensus 4 vivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvv--vddkewaekairfvkslgaqvlii 81 (134)
T 2l69_A 4 VIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVV--VDDKEWAEKAIRFVKSLGAQVLII 81 (134)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEE--CSSHHHHHHHHHHHHHHCCCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEE--EccHHHHHHHHHHHHhcCCeEEEE
Confidence 356677788888999999999999999999998876655420 1233 33221 12222 334566666665544444
Q ss_pred EEecCCCh--HHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 104 GVTSRNSE--TEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 104 ~lt~~~~~--~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
++....+. +.-....+-|..-- .--+++.+...++++++
T Consensus 82 iydqdqnrleefsrevrrrgfevr--tvtspddfkkslerlir 122 (134)
T 2l69_A 82 IYDQDQNRLEEFSREVRRRGFEVR--TVTSPDDFKKSLERLIR 122 (134)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCEE--EESSHHHHHHHHHHHHH
T ss_pred EEeCchhHHHHHHHHHHhcCceEE--EecChHHHHHHHHHHHH
Confidence 44332211 12223344454332 12345667666666653
No 184
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=83.13 E-value=10 Score=27.01 Aligned_cols=81 Identities=16% Similarity=0.026 Sum_probs=55.1
Q ss_pred HHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCC----C---CCHHHHHHHHHhhCCCCcEEEEecCCChHHH
Q 045936 43 SMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMP----V---MDGIEATKAMRAMKVESKIVGVTSRNSETER 114 (145)
Q Consensus 43 ~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~----~---~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~ 114 (145)
...++..|..+. .+.+.+++...... ..|.++++-.-. + ...+++++.+++.. ++||++-.+-.+.+..
T Consensus 111 ~~~l~~~gi~vi~~v~t~~~a~~~~~~--GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v 187 (328)
T 2gjl_A 111 IAEFRRHGVKVIHKCTAVRHALKAERL--GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL-RVPIIASGGFADGRGL 187 (328)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHT--TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC-CSCEEEESSCCSHHHH
T ss_pred HHHHHHcCCCEEeeCCCHHHHHHHHHc--CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc-CCCEEEECCCCCHHHH
Confidence 344555576554 56788888776654 379888753221 1 24677777777643 6788877777788888
Q ss_pred HHHHHhcccEEe
Q 045936 115 EVFMQAGLDLCY 126 (145)
Q Consensus 115 ~~~~~~g~~~~l 126 (145)
..++..|++.+.
T Consensus 188 ~~al~~GAdgV~ 199 (328)
T 2gjl_A 188 VAALALGADAIN 199 (328)
T ss_dssp HHHHHHTCSEEE
T ss_pred HHHHHcCCCEEE
Confidence 888899999864
No 185
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=83.01 E-value=4.7 Score=26.45 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=43.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEe-CCCCCCCH--HH-HHHHHHhhCCCCcEEE
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFID-MEMPVMDG--IE-ATKAMRAMKVESKIVG 104 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d-~~~~~~~g--~~-~~~~l~~~~~~~~ii~ 104 (145)
|+|+|........+...|++.|+.+..+...+..+..+.. ..+|.+++- --....+. .. ..+.++......|++-
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLG 82 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER-IDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILG 82 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHH-HCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhh-CCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEE
Confidence 8999987776677888999899887655543211222332 247877772 11111111 11 1234443334678876
Q ss_pred Eec
Q 045936 105 VTS 107 (145)
Q Consensus 105 lt~ 107 (145)
++-
T Consensus 83 IC~ 85 (195)
T 1qdl_B 83 VCL 85 (195)
T ss_dssp ETH
T ss_pred Eeh
Confidence 644
No 186
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=82.13 E-value=5.4 Score=26.05 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=33.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCH---HHHHHHHhcCCCccEEEEe
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENG---KEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~---~~~l~~l~~~~~~dlil~d 78 (145)
+|+|+|+.......+...|++.|+.+..+.+. ++....+.....+++||..
T Consensus 2 ~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~g 55 (192)
T 1i1q_B 2 DILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSP 55 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECC
T ss_pred cEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECC
Confidence 68999977777788889999999887655544 4444444321234566643
No 187
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=81.78 E-value=6.1 Score=28.00 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhCCC-CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 86 GIEATKAMRAMKVE-SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 86 g~~~~~~l~~~~~~-~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
-.+.++..|+..+. .+|.+- ..+.+....+++.|++.++..+++++.+...++.+
T Consensus 179 i~~av~~ar~~~~~~~~I~VE--V~tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l 234 (285)
T 1o4u_A 179 AERAVQEVRKIIPFTTKIEVE--VENLEDALRAVEAGADIVMLDNLSPEEVKDISRRI 234 (285)
T ss_dssp HHHHHHHHHTTSCTTSCEEEE--ESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEE--eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 34577777877665 455443 33577888899999999989999999999888765
No 188
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=81.60 E-value=7.3 Score=27.56 Aligned_cols=54 Identities=9% Similarity=0.081 Sum_probs=41.9
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+.++..|+..|..+|.+-.. +.+....++++|++.++..+++++++...++.+
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l 235 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRR 235 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 457777888776666655443 467888899999999989999999999888764
No 189
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=81.57 E-value=9.4 Score=25.40 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=45.1
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCCC--------CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEMP--------VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~~--------~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+.+.+++...... .+|.+++..-.+ ...+++.++.+++..++.|+++..+-. .+....++..|++.+.
T Consensus 122 s~~t~~e~~~a~~~--g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 198 (227)
T 2tps_A 122 SAHTMSEVKQAEED--GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVS 198 (227)
T ss_dssp EECSHHHHHHHHHH--TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEE
T ss_pred ecCCHHHHHHHHhC--CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 45788886665544 489888632111 123678888887754447887766555 6677778889998873
No 190
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=81.57 E-value=13 Score=26.98 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=54.9
Q ss_pred ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC--C--CCcEEEEecCCChHHHHHHHHhcccEE-eeCCC
Q 045936 56 AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK--V--ESKIVGVTSRNSETEREVFMQAGLDLC-YTKPL 130 (145)
Q Consensus 56 ~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~--~--~~~ii~lt~~~~~~~~~~~~~~g~~~~-l~kP~ 130 (145)
..+.+.+ +.+.. ..+|.|++|+.-...+--++...++... . ..++++=+...++..+..+++.|++++ ++|--
T Consensus 50 i~~p~~~-e~a~~-~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~ 127 (339)
T 1izc_A 50 IPSTFVT-KVLAA-TKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVE 127 (339)
T ss_dssp SCCHHHH-HHHHH-TCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCC
T ss_pred CCCHHHH-HHHHh-CCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCC
Confidence 3444444 44444 3599999998765555444555554422 1 255655566777888889999999985 56677
Q ss_pred CHHHHHHHHHHH
Q 045936 131 TMAKIVPLLEEL 142 (145)
Q Consensus 131 ~~~~l~~~l~~~ 142 (145)
+.+++....+.+
T Consensus 128 saee~~~~~~~~ 139 (339)
T 1izc_A 128 TVEEVREFVKEM 139 (339)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 778887766543
No 191
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=81.47 E-value=6.5 Score=27.24 Aligned_cols=84 Identities=10% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHHHHH---hcCCeE-EEecCHHHHHHHHhcCCCccEEEEeCCC-CC-CCHHHHHHHHHhhCC----CCcEEEEecCC
Q 045936 40 RIHSMILK---SVGFKV-EVAENGKEAVDLFRTGAKFHIVFIDMEM-PV-MDGIEATKAMRAMKV----ESKIVGVTSRN 109 (145)
Q Consensus 40 ~~l~~~l~---~~g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~-~~-~~g~~~~~~l~~~~~----~~~ii~lt~~~ 109 (145)
..++.++. ..|..+ +.+++.+++...+.. . .|++=+.... .+ ...++....+...-| +.+++..++-.
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~-g-ad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~ 218 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEA-G-AEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYS 218 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH-T-CSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-C-CCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCCC
Confidence 44555554 678774 478899888776665 3 5776554322 11 112344444444332 56777777777
Q ss_pred ChHHHHHHHHhcccEEe
Q 045936 110 SETEREVFMQAGLDLCY 126 (145)
Q Consensus 110 ~~~~~~~~~~~g~~~~l 126 (145)
+.+....+.. |+++++
T Consensus 219 s~~dv~~l~~-Ga~gvl 234 (254)
T 1vc4_A 219 RKEELKALEG-LFDAVL 234 (254)
T ss_dssp SHHHHHTTTT-TCSEEE
T ss_pred CHHHHHHHHc-CCCEEE
Confidence 7899999999 999986
No 192
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=81.37 E-value=7.6 Score=27.51 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=39.8
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+.++..|+..+....|.++. .+.+....+...|++.+...|++++.+...++.+
T Consensus 183 ~~av~~ar~~~~~~~~IgVev-~t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 183 GEAVRRAKARAPHYLKVEVEV-RSLEELEEALEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp HHHHHHHHHHSCTTSCEEEEE-SSHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 346777777765543343433 4577788889999999989999999988877654
No 193
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=81.07 E-value=6.8 Score=27.62 Aligned_cols=101 Identities=15% Similarity=0.230 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCC----CCC-CHHHHHHHHHhhC--CCCcEEEEecCCC
Q 045936 40 RIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEM----PVM-DGIEATKAMRAMK--VESKIVGVTSRNS 110 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~----~~~-~g~~~~~~l~~~~--~~~~ii~lt~~~~ 110 (145)
......|+..|+.+. -+.++-..+..+.. -++|.|=+|-.. ... ....+++.+-... .++ -++.-+..+
T Consensus 166 ~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~-l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~-~vvAEGVEt 243 (294)
T 2r6o_A 166 RTCLDALRARGVRLALDDFGTGYSSLSYLSQ-LPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGM-EVVAEGIET 243 (294)
T ss_dssp HHHHHHHHHHTCEEEEEEETSSCBCHHHHHH-SCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTC-EEEECCCCS
T ss_pred HHHHHHHHHCCCEEEEECCCCCchhHHHHHh-CCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCC-EEEEecCCc
Confidence 344455677788765 45555555666666 579999888433 221 2333445443321 223 344666777
Q ss_pred hHHHHHHHHhcccE----EeeCCCCHHHHHHHHHHH
Q 045936 111 ETEREVFMQAGLDL----CYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 111 ~~~~~~~~~~g~~~----~l~kP~~~~~l~~~l~~~ 142 (145)
.+....+.+.|++. |+.||...+++...+.+.
T Consensus 244 ~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~~ 279 (294)
T 2r6o_A 244 AQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDRQ 279 (294)
T ss_dssp HHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHhh
Confidence 77888888999876 478999999998877653
No 194
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=81.03 E-value=10 Score=25.50 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=44.0
Q ss_pred CccEEEEeCCCCCC-------CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe-----eCCCCHHHHHHH
Q 045936 71 KFHIVFIDMEMPVM-------DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY-----TKPLTMAKIVPL 138 (145)
Q Consensus 71 ~~dlil~d~~~~~~-------~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~ 138 (145)
..|.++++.-.|+. .+++.++.+++..++.|+++ ...-+.+....+...|++.++ .+.-++.+-.+.
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v-~GGI~~~ni~~~~~aGaD~vvvGsai~~~~d~~~~~~~ 216 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEV-DGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISA 216 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEE-ESSCSTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHH
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEE-ECCcCHHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHH
Confidence 47888887766542 24566777777655667654 454555777788888999975 333345554444
Q ss_pred HHH
Q 045936 139 LEE 141 (145)
Q Consensus 139 l~~ 141 (145)
+++
T Consensus 217 l~~ 219 (228)
T 1h1y_A 217 LRK 219 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 195
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=80.95 E-value=2 Score=31.08 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCC----CC-CCHHHHHHHHHhhC--CCCcEEEEecCC
Q 045936 39 RRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEM----PV-MDGIEATKAMRAMK--VESKIVGVTSRN 109 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~----~~-~~g~~~~~~l~~~~--~~~~ii~lt~~~ 109 (145)
.......|+..|+.+. -|.++-..+..+.. -++|.|=+|-.+ .. .....+++.+-... .++.+ +.-+-.
T Consensus 214 ~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~-lp~d~iKID~sfv~~~~~~~~~~~iv~~ii~la~~lg~~v-vAEGVE 291 (340)
T 4hjf_A 214 AAVILKTLRDAGAGLALDDFGTGFSSLSYLTR-LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEV-VAEGVE 291 (340)
T ss_dssp HHHHHHHHHHHTCEEEEECTTSSSCGGGTGGG-SCCSEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHTCEE-EEECCC
T ss_pred HHHHHHHHHHcCCCccccCCCCCcchHHHHHh-CCCChhcccHHhhhcccCCHhHHHHHHHHHHHHHHcCCEE-EEEeCC
Confidence 3444556677788765 35555556666766 579999888533 22 12334555443321 13333 455667
Q ss_pred ChHHHHHHHHhcccE----EeeCCCCHHHHHHHHHHH
Q 045936 110 SETEREVFMQAGLDL----CYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 110 ~~~~~~~~~~~g~~~----~l~kP~~~~~l~~~l~~~ 142 (145)
+.+....+.+.|++. |+.||.+.+++...+++.
T Consensus 292 t~~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~l~~~ 328 (340)
T 4hjf_A 292 NAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEA 328 (340)
T ss_dssp SHHHHHHHHHTTCCEEESTTTCCSBCHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCEeecCccccCCCHHHHHHHHHhc
Confidence 777888888999876 478999999999888654
No 196
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=80.61 E-value=7.3 Score=25.45 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=49.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCC---eEE-EecCHHHHHHHHhcCCC-ccEEEEeCCCCCCCHHHHHHHHHh---hCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGF---KVE-VAENGKEAVDLFRTGAK-FHIVFIDMEMPVMDGIEATKAMRA---MKV 98 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~---~v~-~~~~~~~~l~~l~~~~~-~dlil~d~~~~~~~g~~~~~~l~~---~~~ 98 (145)
.+|.-+|-++...+..+..+...|. .+. ...|..+.+..+.. .. +|+|++|.-.......++++.+.+ ..|
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~Lkp 155 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN-QPHFDVVFLDPPFHFNLAEQAISLLCENNWLKP 155 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS-SCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhcc-CCCCCEEEECCCCCCccHHHHHHHHHhcCccCC
Confidence 3799999999999999888887775 344 44455544322112 46 999999865433334456666644 234
Q ss_pred CCcEEEEec
Q 045936 99 ESKIVGVTS 107 (145)
Q Consensus 99 ~~~ii~lt~ 107 (145)
+..+++.+.
T Consensus 156 gG~l~i~~~ 164 (201)
T 2ift_A 156 NALIYVETE 164 (201)
T ss_dssp EEEEEEEEE
T ss_pred CcEEEEEEC
Confidence 444444333
No 197
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=80.60 E-value=10 Score=25.20 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=50.4
Q ss_pred CCeE-EEecCHHHHHHHHhcCCCccEEEEeCC------CC---CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHH
Q 045936 50 GFKV-EVAENGKEAVDLFRTGAKFHIVFIDME------MP---VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQ 119 (145)
Q Consensus 50 g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~------~~---~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~ 119 (145)
|..+ ..+.+.+++...... ..|++.+... .. ...+++.++.+++.. +.|+++..+-.+.+....++.
T Consensus 119 ~~~v~~~~~t~~e~~~~~~~--G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~ 195 (223)
T 1y0e_A 119 NVEIMADIATVEEAKNAARL--GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMD 195 (223)
T ss_dssp TSEEEEECSSHHHHHHHHHT--TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHH
T ss_pred CceEEecCCCHHHHHHHHHc--CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHH
Confidence 5554 367788888776554 3787765321 01 112455777777653 688887777778999999999
Q ss_pred hcccEEee
Q 045936 120 AGLDLCYT 127 (145)
Q Consensus 120 ~g~~~~l~ 127 (145)
.|++.++.
T Consensus 196 ~Gad~v~v 203 (223)
T 1y0e_A 196 LGVHCSVV 203 (223)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 99998753
No 198
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=79.92 E-value=6.6 Score=28.05 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=41.2
Q ss_pred ccEEEEeCCC-CC-CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 72 FHIVFIDMEM-PV-MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 72 ~dlil~d~~~-~~-~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
+|.+++--+. .- .+-.+.++..++..|..+|.+-.. +.+....++++|++......++++++...++.+
T Consensus 180 ~d~vlikdNHi~~~G~i~~Av~~~r~~~p~~~ieVEvd--tlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 180 YAGILIKENHIAAAGGVGEALDAAFALNAEVPVQIEVE--TLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp ---------------CHHHHHHHHHHHC--CCCEEEES--SHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CcEEEEeHHHHHHcCCHHHHHHHHHHhCCCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4555553222 11 223457777888777777655543 345677889999999999999999999988765
No 199
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=79.86 E-value=6.6 Score=26.70 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=50.7
Q ss_pred ecCHHHHHHHHhcCCCccEEEEeCCC----CCC-CHHHHHHHHHhhC-CCCcEEE--EecCCChHHHHHHHHhcccEEee
Q 045936 56 AENGKEAVDLFRTGAKFHIVFIDMEM----PVM-DGIEATKAMRAMK-VESKIVG--VTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 56 ~~~~~~~l~~l~~~~~~dlil~d~~~----~~~-~g~~~~~~l~~~~-~~~~ii~--lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+.+.++.++.+.. ...|.+=+|..- |.. -|.++++.||+.. +..++-+ ... ........+.++|++.+..
T Consensus 16 ~~~l~~~i~~l~~-~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~-~p~~~i~~~~~aGad~itv 93 (228)
T 3ovp_A 16 LANLGAECLRMLD-SGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVS-KPEQWVKPMAVAGANQYTF 93 (228)
T ss_dssp GGGHHHHHHHHHH-TTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECS-CGGGGHHHHHHHTCSEEEE
T ss_pred chhHHHHHHHHHH-cCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeC-CHHHHHHHHHHcCCCEEEE
Confidence 3456677777765 346666555422 323 3889999999884 6666532 332 2234677888999998876
Q ss_pred CCCCHHHHHHHHHH
Q 045936 128 KPLTMAKIVPLLEE 141 (145)
Q Consensus 128 kP~~~~~l~~~l~~ 141 (145)
.......+.+.++.
T Consensus 94 H~Ea~~~~~~~i~~ 107 (228)
T 3ovp_A 94 HLEATENPGALIKD 107 (228)
T ss_dssp EGGGCSCHHHHHHH
T ss_pred ccCCchhHHHHHHH
Confidence 65443444444443
No 200
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=79.35 E-value=14 Score=26.15 Aligned_cols=67 Identities=16% Similarity=0.054 Sum_probs=44.8
Q ss_pred EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 53 VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 53 v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+.+.+.+++.+.+.. .+|+|.+|-.-+ .+--+.++.+ ..+ ..+..++.-+.+........|+|.+-
T Consensus 202 eVEv~tl~ea~eAl~a--GaD~I~LDn~~~-~~l~~av~~~---~~~-v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 202 EVEVTNLDELNQAIAA--KADIVMLDNFSG-EDIDIAVSIA---RGK-VALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEEESSHHHHHHHHHT--TCSEEEEESCCH-HHHHHHHHHH---TTT-CEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEeCCHHHHHHHHHc--CCCEEEEcCCCH-HHHHHHHHhh---cCC-ceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 3489999999998886 389999985322 1111222222 223 34557777888888888899998763
No 201
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=79.34 E-value=12 Score=25.15 Aligned_cols=73 Identities=8% Similarity=-0.026 Sum_probs=50.6
Q ss_pred CCeEE-EecCHHHHHHHHhcCCCccEE---EEeCCCCC----CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhc
Q 045936 50 GFKVE-VAENGKEAVDLFRTGAKFHIV---FIDMEMPV----MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAG 121 (145)
Q Consensus 50 g~~v~-~~~~~~~~l~~l~~~~~~dli---l~d~~~~~----~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g 121 (145)
+..+. .+.+.+++...... ..|.| +....-.. ...++.++.++.. ++|+++..+-.+.+....++..|
T Consensus 133 ~~~v~~~~~t~~ea~~a~~~--Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~G 208 (234)
T 1yxy_A 133 NQLLMADISTFDEGLVAHQA--GIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLG 208 (234)
T ss_dssp TCEEEEECSSHHHHHHHHHT--TCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTC
T ss_pred CCeEEEeCCCHHHHHHHHHc--CCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCC
Confidence 55543 67788888777665 37877 33332111 2346778888765 68888877777799999999999
Q ss_pred ccEEe
Q 045936 122 LDLCY 126 (145)
Q Consensus 122 ~~~~l 126 (145)
++.++
T Consensus 209 ad~v~ 213 (234)
T 1yxy_A 209 VAGIV 213 (234)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99975
No 202
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=79.33 E-value=13 Score=25.51 Aligned_cols=78 Identities=9% Similarity=0.141 Sum_probs=55.8
Q ss_pred HHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCC-CC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHH
Q 045936 43 SMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMP-VM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQ 119 (145)
Q Consensus 43 ~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~-~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~ 119 (145)
....+..|..+. -+.+..|+.+.++. . +|++=+ .| .. .|.+.++.++.-.|+.|++.. +.-+.+....++.
T Consensus 120 i~~~~~~gi~~ipGv~TptEi~~A~~~-G-ad~vK~---FPa~~~gG~~~lkal~~p~p~ip~~pt-GGI~~~n~~~~l~ 193 (232)
T 4e38_A 120 VRACQEIGIDIVPGVNNPSTVEAALEM-G-LTTLKF---FPAEASGGISMVKSLVGPYGDIRLMPT-GGITPSNIDNYLA 193 (232)
T ss_dssp HHHHHHHTCEEECEECSHHHHHHHHHT-T-CCEEEE---CSTTTTTHHHHHHHHHTTCTTCEEEEB-SSCCTTTHHHHHT
T ss_pred HHHHHHcCCCEEcCCCCHHHHHHHHHc-C-CCEEEE---CcCccccCHHHHHHHHHHhcCCCeeeE-cCCCHHHHHHHHH
Confidence 334445576654 67899999999876 3 787754 33 23 389999999987788888754 4446788889999
Q ss_pred hcccEEe
Q 045936 120 AGLDLCY 126 (145)
Q Consensus 120 ~g~~~~l 126 (145)
.|+..+.
T Consensus 194 aGa~~~v 200 (232)
T 4e38_A 194 IPQVLAC 200 (232)
T ss_dssp STTBCCE
T ss_pred CCCeEEE
Confidence 9876643
No 203
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=78.77 E-value=13 Score=25.21 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=51.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe--EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCc
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK--VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVESK 101 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~--v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ 101 (145)
..+|..+|-++......+..+...|+. +. ...+..+.+..+.....+|+|++|... ..-..+++.+.+. .|+.
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~LkpGG- 164 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADK--PNNPHYLRWALRYSRPGT- 164 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCG--GGHHHHHHHHHHTCCTTC-
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCch--HHHHHHHHHHHHhcCCCe-
Confidence 458999999999999999998877753 43 566776655544322379999998742 2334456665553 4444
Q ss_pred EEEEec
Q 045936 102 IVGVTS 107 (145)
Q Consensus 102 ii~lt~ 107 (145)
++++.+
T Consensus 165 ~lv~~~ 170 (248)
T 3tfw_A 165 LIIGDN 170 (248)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 455543
No 204
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=78.70 E-value=2.9 Score=28.11 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCcc-EEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChH----HHHHHHHhcccEE--eeCCCCH
Q 045936 60 KEAVDLFRTGAKFH-IVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSET----EREVFMQAGLDLC--YTKPLTM 132 (145)
Q Consensus 60 ~~~l~~l~~~~~~d-lil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~----~~~~~~~~g~~~~--l~kP~~~ 132 (145)
-+.++.+++ ..++ -+++|+++.+ .+-.+++.+.+.+. -.+.+-.....+ ....+.+.|.... +..|.++
T Consensus 47 ~~~i~~lr~-~~~~~~i~ld~~l~d-~p~~~~~~~~~aGa--d~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~ 122 (218)
T 3jr2_A 47 MKAVSTLRH-NHPNHILVCDMKTTD-GGAILSRMAFEAGA--DWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTM 122 (218)
T ss_dssp THHHHHHHH-HCTTSEEEEEEEECS-CHHHHHHHHHHHTC--SEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCH
T ss_pred HHHHHHHHH-hCCCCcEEEEEeecc-cHHHHHHHHHhcCC--CEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecCCH
Confidence 345555554 2123 3455766653 23334555544433 334343332222 2223445566543 4556666
Q ss_pred HHHHHH
Q 045936 133 AKIVPL 138 (145)
Q Consensus 133 ~~l~~~ 138 (145)
++....
T Consensus 123 ~~~~~~ 128 (218)
T 3jr2_A 123 QDAKAW 128 (218)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 205
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=78.66 E-value=16 Score=26.42 Aligned_cols=113 Identities=8% Similarity=0.107 Sum_probs=74.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcC--CeE-E-Eec------CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC
Q 045936 28 FALVVDDDPMIRRIHSMILKSVG--FKV-E-VAE------NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK 97 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g--~~v-~-~~~------~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~ 97 (145)
+|-++...-.+...+..++.+.| +.. + .-+ +..|.++.+.....-++|++=..+.+....++++.+|+..
T Consensus 170 ~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e~~~~~~~r~~~ 249 (334)
T 3mwd_B 170 SVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGR 249 (334)
T ss_dssp SEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHHHHHTTS
T ss_pred CEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHHHHHHHHHHhhc
Confidence 69999999999988888886654 442 2 222 4788999888744456676654556655577888888755
Q ss_pred CCCcEEEE-ecCCCh-----------------------HHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 98 VESKIVGV-TSRNSE-----------------------TEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 98 ~~~~ii~l-t~~~~~-----------------------~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
...||+++ +....+ .....+.++|+ ...-++++|...++.+++
T Consensus 250 ~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~~aGv----~~v~~~~el~~~~~~~~~ 316 (334)
T 3mwd_B 250 LTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGV----FVPRSFDELGEIIQSVYE 316 (334)
T ss_dssp CCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTC----BCCSSGGGHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcccccccccccchhhhccCCCccHHHHHHHHHHcCC----eEcCCHHHHHHHHHHHHH
Confidence 67788776 333322 12333345554 346677888887776653
No 206
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=78.35 E-value=16 Score=27.87 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+..+.+.+ ..+|+|.++....... ..+.++.+++..++.|+++- +....+....+.++|++.+..
T Consensus 257 ~~~a~~~~~-aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~-~v~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 257 KYRLDLLTQ-AGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGG-NVVTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHH-TTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHH-cCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEec-ccchHHHHHHHHHcCCCEEEE
Confidence 444444444 3589999987654333 35889999988777777652 335677788889999998754
No 207
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=78.32 E-value=14 Score=25.61 Aligned_cols=80 Identities=9% Similarity=-0.019 Sum_probs=52.6
Q ss_pred HHHHHHhcCCCccEEEEeCCCCCC---CHHHHHHHHHhhCC---CCcEEEEecCCChHHHHHHHHh--cccEEe------
Q 045936 61 EAVDLFRTGAKFHIVFIDMEMPVM---DGIEATKAMRAMKV---ESKIVGVTSRNSETEREVFMQA--GLDLCY------ 126 (145)
Q Consensus 61 ~~l~~l~~~~~~dlil~d~~~~~~---~g~~~~~~l~~~~~---~~~ii~lt~~~~~~~~~~~~~~--g~~~~l------ 126 (145)
+..+.+.. ..-.+++.|..-.++ .-+++++.+.+.-+ .+|++.-..-.+.+....+++. |+++.+
T Consensus 162 e~a~~~~~-~a~~il~t~i~~dG~~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~ 240 (260)
T 2agk_A 162 DTFRELRK-YTNEFLIHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLD 240 (260)
T ss_dssp HHHHHHTT-TCSEEEEEC-------CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBG
T ss_pred HHHHHHHH-hcCEEEEEeeccccCcCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHH
Confidence 66677666 433466666654332 34788898887654 7898887788888888888887 888843
Q ss_pred --eCC-CCHHHHHHHHHH
Q 045936 127 --TKP-LTMAKIVPLLEE 141 (145)
Q Consensus 127 --~kP-~~~~~l~~~l~~ 141 (145)
..| ++.+++.+.+++
T Consensus 241 l~~g~~~~~~~~~~~~~~ 258 (260)
T 2agk_A 241 IFGGNLVKFEDCCRWNEK 258 (260)
T ss_dssp GGTCSSBCHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHh
Confidence 234 788887776643
No 208
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=78.26 E-value=17 Score=27.25 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=11.6
Q ss_pred HHHHHhcCCCccEEEEeC
Q 045936 62 AVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 62 ~l~~l~~~~~~dlil~d~ 79 (145)
++..+.. ..+|+||+|.
T Consensus 175 ~l~~~~~-~~~D~VIIDT 191 (433)
T 2xxa_A 175 ALKEAKL-KFYDVLLVDT 191 (433)
T ss_dssp HHHHHHH-TTCSEEEEEC
T ss_pred HHHHHHh-CCCCEEEEEC
Confidence 3444443 3589999998
No 209
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=77.54 E-value=10 Score=28.21 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+.++.+.+ ..+|+|++|....... -.+.++.+++.. ..++++ ......+....+.++|++.+..
T Consensus 146 ~e~~~~lve-aGvdvIvldta~G~~~~~~e~I~~ik~~~-~i~Vi~-g~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVE-AGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHH-HTCSEEEECCSCCSBHHHHHHHHHHHTTC-CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH-cCCCEEEEeCCCCCcccHHHHHHHHHhcC-CCeEEE-eecCCHHHHHHHHHcCCCEEEE
Confidence 344444443 2489999987654322 257788887765 566653 3445677888899999999876
No 210
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=77.23 E-value=14 Score=24.96 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=47.1
Q ss_pred cCHHHHHHHHhcCCCccEEEEeC---CC-CC-CCHHHHHHHHHhhCCCCcEE--EEecCCChHHHHHHHHhcccEEeeCC
Q 045936 57 ENGKEAVDLFRTGAKFHIVFIDM---EM-PV-MDGIEATKAMRAMKVESKIV--GVTSRNSETEREVFMQAGLDLCYTKP 129 (145)
Q Consensus 57 ~~~~~~l~~l~~~~~~dlil~d~---~~-~~-~~g~~~~~~l~~~~~~~~ii--~lt~~~~~~~~~~~~~~g~~~~l~kP 129 (145)
.+..+.++.+.+. ..|.+=+|. .. |. ..|.+.++.+|+.. +.++. +++. +.......+.++|++.+....
T Consensus 17 ~~l~~~i~~~~~~-Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~-~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~ 93 (230)
T 1tqj_A 17 SRLGEEIKAVDEA-GADWIHVDVMDGRFVPNITIGPLIVDAIRPLT-KKTLDVHLMIV-EPEKYVEDFAKAGADIISVHV 93 (230)
T ss_dssp GGHHHHHHHHHHT-TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC-CSEEEEEEESS-SGGGTHHHHHHHTCSEEEEEC
T ss_pred hHHHHHHHHHHHc-CCCEEEEEEEecCCCcchhhhHHHHHHHHhhc-CCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECc
Confidence 3455555655542 355554443 21 12 23678899998754 33443 4443 334467889999999986655
Q ss_pred C--CHHHHHHHHHHH
Q 045936 130 L--TMAKIVPLLEEL 142 (145)
Q Consensus 130 ~--~~~~l~~~l~~~ 142 (145)
. ..+...+.++.+
T Consensus 94 e~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 94 EHNASPHLHRTLCQI 108 (230)
T ss_dssp STTTCTTHHHHHHHH
T ss_pred ccccchhHHHHHHHH
Confidence 5 334444555443
No 211
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=77.14 E-value=11 Score=26.30 Aligned_cols=81 Identities=17% Similarity=0.075 Sum_probs=50.5
Q ss_pred HHHHHHHhcCC--e-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEEEEecCCChHHHHH
Q 045936 41 IHSMILKSVGF--K-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIVGVTSRNSETEREV 116 (145)
Q Consensus 41 ~l~~~l~~~g~--~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii~lt~~~~~~~~~~ 116 (145)
.++.+-+..+. . ...+.+.+++.+.+.. ..|.|.+|.. . ...+ +..+.++...|++++. .++.-+.+....
T Consensus 171 ai~~~r~~~~~~~~i~vev~tlee~~~A~~a--GaD~I~ld~~-~-~~~l~~~v~~l~~~~~~~~i~-AsGGI~~~ni~~ 245 (273)
T 2b7n_A 171 FLTHARKNLPFTAKIEIECESFEEAKNAMNA--GADIVMCDNL-S-VLETKEIAAYRDAHYPFVLLE-ASGNISLESINA 245 (273)
T ss_dssp HHHHHGGGSCTTCCEEEEESSHHHHHHHHHH--TCSEEEEETC-C-HHHHHHHHHHHHHHCTTCEEE-EESSCCTTTHHH
T ss_pred HHHHHHHhCCCCceEEEEcCCHHHHHHHHHc--CCCEEEECCC-C-HHHHHHHHHHhhccCCCcEEE-EECCCCHHHHHH
Confidence 34443333443 3 3478889998888876 3899999852 1 1111 2333444445667665 455557788889
Q ss_pred HHHhcccEEe
Q 045936 117 FMQAGLDLCY 126 (145)
Q Consensus 117 ~~~~g~~~~l 126 (145)
....|++.+-
T Consensus 246 ~~~aGaD~i~ 255 (273)
T 2b7n_A 246 YAKSGVDAIS 255 (273)
T ss_dssp HHTTTCSEEE
T ss_pred HHHcCCcEEE
Confidence 9999997763
No 212
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=76.93 E-value=18 Score=25.91 Aligned_cols=79 Identities=8% Similarity=0.004 Sum_probs=54.1
Q ss_pred HHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCC-C----CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHH
Q 045936 45 ILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEM-P----VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFM 118 (145)
Q Consensus 45 ~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~-~----~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~ 118 (145)
.++..|+.+. .+.+.+++...... .+|.++++-.- . ....+++++.+++.. ++|+++..+-.+.+....++
T Consensus 105 ~l~~~g~~v~~~v~~~~~a~~~~~~--GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al 181 (332)
T 2z6i_A 105 RFHEAGIIVIPVVPSVALAKRMEKI--GADAVIAEGMEAGGHIGKLTTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGF 181 (332)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT--TCSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHH
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHc--CCCEEEEECCCCCCCCCCccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHH
Confidence 3444566654 56777777665544 48988885321 1 234677888887654 58888777777788899999
Q ss_pred HhcccEEe
Q 045936 119 QAGLDLCY 126 (145)
Q Consensus 119 ~~g~~~~l 126 (145)
..|++.+.
T Consensus 182 ~~GAdgV~ 189 (332)
T 2z6i_A 182 MLGAEAVQ 189 (332)
T ss_dssp HTTCSEEE
T ss_pred HcCCCEEE
Confidence 99998863
No 213
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=76.77 E-value=17 Score=25.71 Aligned_cols=81 Identities=11% Similarity=0.143 Sum_probs=51.9
Q ss_pred HHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeCCCC--CC-------CH---HHHHH----HHHhhCCCCcEEEEe-
Q 045936 45 ILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMP--VM-------DG---IEATK----AMRAMKVESKIVGVT- 106 (145)
Q Consensus 45 ~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~--~~-------~g---~~~~~----~l~~~~~~~~ii~lt- 106 (145)
..++.|+. +.++.+.+++-..... .||+|++..-+- +. +- .+.+. ..++..|++.++.-.
T Consensus 158 ~A~~~gL~Ti~~v~~~eeA~amA~a--gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gG 235 (286)
T 2p10_A 158 EAHKLDLLTTPYVFSPEDAVAMAKA--GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGG 235 (286)
T ss_dssp HHHHTTCEECCEECSHHHHHHHHHH--TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEEST
T ss_pred HHHHCCCeEEEecCCHHHHHHHHHc--CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 44566744 5689999999888876 489999876532 11 11 22333 333445665444444
Q ss_pred cCCChHHHHHHHHh--cccEEee
Q 045936 107 SRNSETEREVFMQA--GLDLCYT 127 (145)
Q Consensus 107 ~~~~~~~~~~~~~~--g~~~~l~ 127 (145)
.-..++....+++. |+++|+.
T Consensus 236 pIstpeDv~~~l~~t~G~~G~~g 258 (286)
T 2p10_A 236 PIANPEDARFILDSCQGCHGFYG 258 (286)
T ss_dssp TCCSHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCHHHHHHHHhcCCCccEEEe
Confidence 33678888888998 9999974
No 214
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=76.58 E-value=7.3 Score=26.17 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred EEEEeC--CHHHHHHHHHHHHhcCCeEE-Ee--cCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-------HHHHHHHhh
Q 045936 29 ALVVDD--DPMIRRIHSMILKSVGFKVE-VA--ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-------EATKAMRAM 96 (145)
Q Consensus 29 vlii~~--~~~~~~~l~~~l~~~g~~v~-~~--~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-------~~~~~l~~~ 96 (145)
|.+-.. ...........++..|..+. .+ ++..+.++.+.. . .|.|+++...++..|. +.++.+++.
T Consensus 95 v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~-~-~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~ 172 (230)
T 1rpx_A 95 VSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLD-A-VDLVLIMSVNPGFGGQSFIESQVKKISDLRKI 172 (230)
T ss_dssp EEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTT-T-CSEEEEESSCTTCSSCCCCTTHHHHHHHHHHH
T ss_pred EEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh-h-CCEEEEEEEcCCCCCccccHHHHHHHHHHHHH
Q ss_pred CC----CCcEEEEecCCChHHHHHHHHhcccEE-----eeCCCCHHHHHHHHHHHhhC
Q 045936 97 KV----ESKIVGVTSRNSETEREVFMQAGLDLC-----YTKPLTMAKIVPLLEELQKN 145 (145)
Q Consensus 97 ~~----~~~ii~lt~~~~~~~~~~~~~~g~~~~-----l~kP~~~~~l~~~l~~~~~~ 145 (145)
.+ +.|+++..+-. ++....+...|++.+ +.+.-++.+-.+.+++.++.
T Consensus 173 ~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~a~dp~~a~~~l~~~~~~ 229 (230)
T 1rpx_A 173 CAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRP 229 (230)
T ss_dssp HHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTCCCC
T ss_pred HHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHhc
No 215
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=76.26 E-value=17 Score=25.40 Aligned_cols=85 Identities=8% Similarity=-0.067 Sum_probs=52.1
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhcCCeEE---Ee----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALVV-DDDPM---IRRIHSMILKSVGFKVE---VA----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii-~~~~~---~~~~l~~~l~~~g~~v~---~~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|.++ +++.. ....++..++..|..+. .+ .+....+..+.. ..||+|++.. .+.....+++.+++.
T Consensus 137 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~-~~~dav~~~~--~~~~a~~~~~~~~~~ 213 (362)
T 3snr_A 137 TVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVA-ANPDAILVGA--SGTAAALPQTTLRER 213 (362)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH-HCCSEEEEEC--CHHHHHHHHHHHHHT
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHh-cCCCEEEEec--CcchHHHHHHHHHHc
Confidence 55444 44443 33456677777887643 22 245556666655 4689988753 234466788888888
Q ss_pred CCCCcEEEEecCCChHHHH
Q 045936 97 KVESKIVGVTSRNSETERE 115 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~ 115 (145)
....|++.+....+.....
T Consensus 214 g~~~p~i~~~g~~~~~~~~ 232 (362)
T 3snr_A 214 GYNGLIYQTHGAASMDFIR 232 (362)
T ss_dssp TCCSEEEECGGGCSHHHHH
T ss_pred CCCccEEeccCcCcHHHHH
Confidence 7778886555555555443
No 216
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=76.16 E-value=5.9 Score=27.31 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCChH---HHHHHHHhcccEEeeCCCCHHHHHHHHH
Q 045936 86 GIEATKAMRAMKVESKIVGVTSRNSET---EREVFMQAGLDLCYTKPLTMAKIVPLLE 140 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~lt~~~~~~---~~~~~~~~g~~~~l~kP~~~~~l~~~l~ 140 (145)
+++.++.+++. .+.|+++++ +.++. ....+.+.|+++++......+++...+.
T Consensus 82 ~~~~i~~ir~~-~~~Pv~~m~-~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~ 137 (262)
T 1rd5_A 82 VLEMLREVTPE-LSCPVVLLS-YYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWS 137 (262)
T ss_dssp HHHHHHHHGGG-CSSCEEEEC-CSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHH
T ss_pred HHHHHHHHHhc-CCCCEEEEe-cCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHH
Confidence 45677778765 567877664 22221 1234889999998876555555544443
No 217
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=76.13 E-value=5.1 Score=29.35 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=61.8
Q ss_pred HHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCC-----CCCHHHHHHHHHhhCCCC-cEEEEecCCChHHH
Q 045936 43 SMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMP-----VMDGIEATKAMRAMKVES-KIVGVTSRNSETER 114 (145)
Q Consensus 43 ~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~-----~~~g~~~~~~l~~~~~~~-~ii~lt~~~~~~~~ 114 (145)
...|+..|+.+. -|.++-..+..+.. -++|.|=+|-.+- +.....+++.+-...... .-++.-+-.+.+..
T Consensus 282 l~~l~~~G~~ialDDfG~g~ssl~~L~~-l~~d~iKiD~~~v~~~~~~~~~~~~v~~i~~~a~~l~~~vvaEGVEt~~~~ 360 (400)
T 3sy8_A 282 LVRLWIMGCGLAMDDFGAGYSSLDRLCE-FPFSQIKLDRTFVQKMKTQPRSCAVISSVVALAQALGISLVVEGVESDEQR 360 (400)
T ss_dssp HHHHHHHTCEEEEEEECSCSGGGGSSSS-CCCSEEEECTHHHHHHHHCTTHHHHHHHHHHHHHHHTCEEEECCCCCHHHH
T ss_pred HHHHHHCCCEEEEECCCCchhhHHHHHh-CCCCEEEECHHHHhhhhcChhHHHHHHHHHHHHHHcCCeEEEecCCcHHHH
Confidence 345666787754 56666666666665 5789988885331 223444444443321111 23445666777778
Q ss_pred HHHHHhcccE----EeeCCCCHHHHHHHHHH
Q 045936 115 EVFMQAGLDL----CYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 115 ~~~~~~g~~~----~l~kP~~~~~l~~~l~~ 141 (145)
..+.+.|++. |+.||.+.+++...++.
T Consensus 361 ~~l~~~g~~~~QGy~~~~P~~~~~~~~~~~~ 391 (400)
T 3sy8_A 361 VRLIELGCSIAQGYLFARPMPEQHFLDYCSG 391 (400)
T ss_dssp HHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHcCCCEEEcCeecCcCCHHHHHHHHHh
Confidence 8888999865 47899999999887754
No 218
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=76.00 E-value=19 Score=25.75 Aligned_cols=81 Identities=12% Similarity=-0.002 Sum_probs=56.0
Q ss_pred HHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCC-CCC----CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHH
Q 045936 43 SMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDME-MPV----MDGIEATKAMRAMKVESKIVGVTSRNSETEREV 116 (145)
Q Consensus 43 ~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~-~~~----~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~ 116 (145)
...++..|..+. .+.+.+++...... .+|.|+++-. ..+ ...++++..+++.. ..|+++-.+-.+.+....
T Consensus 117 ~~~l~~~g~~v~~~v~s~~~a~~a~~~--GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~ 193 (326)
T 3bo9_A 117 IRELKENGTKVIPVVASDSLARMVERA--GADAVIAEGMESGGHIGEVTTFVLVNKVSRSV-NIPVIAAGGIADGRGMAA 193 (326)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHT--TCSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHH
T ss_pred HHHHHHcCCcEEEEcCCHHHHHHHHHc--CCCEEEEECCCCCccCCCccHHHHHHHHHHHc-CCCEEEECCCCCHHHHHH
Confidence 344555666654 56788888776654 3788887542 222 35677888777643 678887777777889999
Q ss_pred HHHhcccEEe
Q 045936 117 FMQAGLDLCY 126 (145)
Q Consensus 117 ~~~~g~~~~l 126 (145)
++..|++.+.
T Consensus 194 al~~GA~gV~ 203 (326)
T 3bo9_A 194 AFALGAEAVQ 203 (326)
T ss_dssp HHHHTCSEEE
T ss_pred HHHhCCCEEE
Confidence 9999999864
No 219
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=75.84 E-value=18 Score=25.30 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEe-CCCCCCC-HHHHHHHHHhhCC-CCcEEEEecCCCh
Q 045936 36 PMIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFID-MEMPVMD-GIEATKAMRAMKV-ESKIVGVTSRNSE 111 (145)
Q Consensus 36 ~~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d-~~~~~~~-g~~~~~~l~~~~~-~~~ii~lt~~~~~ 111 (145)
+.....+..+-...|.. ++.+++.+|+-+.+.. .+++|=++ -++.... .++....|...-| +..+|.=++-.++
T Consensus 139 ~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~--~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~ 216 (258)
T 4a29_A 139 ERELESLLEYARSYGMEPLILINDENDLDIALRI--GARFIGIMSRDFETGEINKENQRKLISMIPSNVVKVAKLGISER 216 (258)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHT--TCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCH
T ss_pred HHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcC--CCcEEEEeCCCccccccCHHHHHHHHhhCCCCCEEEEcCCCCCH
Confidence 34455666667788977 5589999998888775 36777444 3333222 2444555555444 4445555777888
Q ss_pred HHHHHHHHhcccEEee
Q 045936 112 TEREVFMQAGLDLCYT 127 (145)
Q Consensus 112 ~~~~~~~~~g~~~~l~ 127 (145)
+........|++++|.
T Consensus 217 ~dv~~l~~~G~~a~LV 232 (258)
T 4a29_A 217 NEIEELRKLGVNAFLI 232 (258)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEE
Confidence 8999999999999985
No 220
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=75.81 E-value=10 Score=25.00 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhCCCCcEEE--EecCCChHHHHHHHHhcccEEeeC
Q 045936 86 GIEATKAMRAMKVESKIVG--VTSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~--lt~~~~~~~~~~~~~~g~~~~l~k 128 (145)
|.++++.+|+..++.|+.+ ............+.+.|++.++..
T Consensus 40 g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~ 84 (211)
T 3f4w_A 40 GVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVL 84 (211)
T ss_dssp TTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEe
Confidence 4455666655544445421 112112222555566666665543
No 221
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=75.81 E-value=15 Score=25.96 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=47.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcC-CCccEEEEeCCCCC-CCHHHHHHHHHh
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG-AKFHIVFIDMEMPV-MDGIEATKAMRA 95 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~-~~~dlil~d~~~~~-~~g~~~~~~l~~ 95 (145)
-++.++|.++.....++..++..+-.-+...|+..++..+... ..+|+|++|=-... .....+++.+.+
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 5899999999999999888865432233567888877766431 25899999965542 334445555544
No 222
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=75.60 E-value=7.4 Score=27.56 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=56.4
Q ss_pred EEEEeCCHHHHHHHHHHH----HhcCC--e-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 29 ALVVDDDPMIRRIHSMIL----KSVGF--K-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l----~~~g~--~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
+||-|++-.....+...+ +..++ . .+.+.+.+++.+.+.. ..|+|.+|- ++...-.+..+.++..++..+
T Consensus 166 vlikdnHi~~~G~i~~av~~ar~~~~~~~~I~VEV~tleea~eA~~a--GaD~I~LDn-~~~e~l~~av~~l~~~~~~v~ 242 (285)
T 1o4u_A 166 VMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVEA--GADIVMLDN-LSPEEVKDISRRIKDINPNVI 242 (285)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHT--TCSEEEEES-CCHHHHHHHHHHHHHHCTTSE
T ss_pred EEEchhHHhhcCCHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc--CCCEEEECC-CCHHHHHHHHHHhhccCCCce
Confidence 566666554322222222 22333 2 3378899999998876 379999996 222222345555554444554
Q ss_pred EEEEecCCChHHHHHHHHhcccEEe
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+ ..++.-+.+.+......|++.+-
T Consensus 243 i-eASGGIt~eni~~~a~tGVD~Is 266 (285)
T 1o4u_A 243 V-EVSGGITEENVSLYDFETVDVIS 266 (285)
T ss_dssp E-EEEECCCTTTGGGGCCTTCCEEE
T ss_pred E-EEECCCCHHHHHHHHHcCCCEEE
Confidence 4 45666677777778888888764
No 223
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=75.52 E-value=22 Score=26.95 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+.+..+.. ..+|.+.++...... ..++.++.+++..+..|+++ ......+....+.+.|++.+..
T Consensus 239 ~~~a~~l~~-aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 239 MERVEKLVK-AGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp HHHHHHHHH-TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH-hCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHHHcCCCEEEE
Confidence 444444444 358999988764322 26788999999877777765 4456677778888999998765
No 224
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=75.50 E-value=7 Score=28.57 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe------eC-CCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY------TK-PLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l------~k-P~~~~~l~~~l~~~ 142 (145)
++.++.+++..+.+||+....-.+.+...+++..||+.+. .. |.-..++..-++..
T Consensus 265 ~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~ 327 (354)
T 4ef8_A 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGV 327 (354)
T ss_dssp HHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHH
Confidence 6788888887668999999999999999999999998863 33 65555666555544
No 225
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=75.41 E-value=7.2 Score=28.88 Aligned_cols=93 Identities=13% Similarity=0.072 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCC----CCCHHHHHHHHHhh-C-CCCcEEEEecCCCh
Q 045936 40 RIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMP----VMDGIEATKAMRAM-K-VESKIVGVTSRNSE 111 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~----~~~g~~~~~~l~~~-~-~~~~ii~lt~~~~~ 111 (145)
......|+..|+.+. -+.++-..+..+.. -++|.|=+|-..- ......+++.+-.. + ....+ +..+-.+.
T Consensus 325 ~~~l~~l~~~G~~ialDDfG~g~ssl~~L~~-l~~d~iKiD~~~i~~~~~~~~~~~~~~~i~~~~~~~~~v-iaegVEt~ 402 (437)
T 3hvb_A 325 KQLTQGLATLHCQAAISQFGCSLNPFNALKH-LTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLS-IVPFVESA 402 (437)
T ss_dssp HHHHHHHHHTTCEEEEEEETCSSSHHHHHTT-SCCSEEEECGGGSSCCSSHHHHHHHHHHHHHHHHTTCEE-EECCCCSH
T ss_pred HHHHHHHHHCCCEEEEcCCCCCccHHHHHhh-CCCCEEEECHHHHHhHhhCcHHHHHHHHHHHHHHcCCCE-EeeeeCCH
Confidence 344556678898865 57777777888876 6799999995432 11222344433321 1 23333 45677788
Q ss_pred HHHHHHHHhcccE----EeeCCCCHHH
Q 045936 112 TEREVFMQAGLDL----CYTKPLTMAK 134 (145)
Q Consensus 112 ~~~~~~~~~g~~~----~l~kP~~~~~ 134 (145)
+....+...|++. |+.||.+.++
T Consensus 403 ~~~~~l~~~G~~~~QG~~~~~P~~~~~ 429 (437)
T 3hvb_A 403 SVLATLWQAGATYIQGYYLQGPSQAMD 429 (437)
T ss_dssp HHHHHHHHHTCSEEECTTTCCCBSSCC
T ss_pred HHHHHHHHcCCCEeccccCCCCCcccc
Confidence 8888888999876 3678876654
No 226
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=75.23 E-value=16 Score=24.48 Aligned_cols=82 Identities=10% Similarity=0.066 Sum_probs=51.7
Q ss_pred CHHHHHHHHhcCCCccEEEE-eCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe------e
Q 045936 58 NGKEAVDLFRTGAKFHIVFI-DMEMPV---MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY------T 127 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~-d~~~~~---~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l------~ 127 (145)
+..+.++.+.. ...|.|++ +....+ ...++.++.+++.. ..|+++-.+-...+....++..|++.++ .
T Consensus 155 ~~~e~~~~~~~-~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~-~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 155 DAVKWAKEVEE-LGAGEILLTSIDRDGTGLGYDVELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp EHHHHHHHHHH-HTCSEEEEEETTTTTTCSCCCHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHh-CCCCEEEEecccCCCCcCcCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 34454444444 23676654 443321 12467788887754 6788877777777788888889999874 3
Q ss_pred CCCCHHHHHHHHHH
Q 045936 128 KPLTMAKIVPLLEE 141 (145)
Q Consensus 128 kP~~~~~l~~~l~~ 141 (145)
.+.+.+++...+++
T Consensus 233 ~~~~~~~~~~~l~~ 246 (253)
T 1h5y_A 233 RVLSIAQVKRYLKE 246 (253)
T ss_dssp TSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 45667777766653
No 227
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=75.09 E-value=21 Score=25.90 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=53.7
Q ss_pred HHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCC-----CC-----------CCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 46 LKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEM-----PV-----------MDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 46 l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~-----~~-----------~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
++..|..+. .+.+.+++...... .+|.|+++-.. .. ...+++++.+++.. ++||++...-
T Consensus 141 ~~~~g~~v~~~v~t~~~a~~a~~~--GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaaGGI 217 (369)
T 3bw2_A 141 LRRAGTLTLVTATTPEEARAVEAA--GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV-DIPVVAAGGI 217 (369)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT--TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEESSC
T ss_pred HHHCCCeEEEECCCHHHHHHHHHc--CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc-CceEEEECCC
Confidence 344566544 67788887766654 48988885311 10 23377888887653 6788877777
Q ss_pred CChHHHHHHHHhcccEEe
Q 045936 109 NSETEREVFMQAGLDLCY 126 (145)
Q Consensus 109 ~~~~~~~~~~~~g~~~~l 126 (145)
.+.+....++..|++.+.
T Consensus 218 ~~~~~~~~~l~~GAd~V~ 235 (369)
T 3bw2_A 218 MRGGQIAAVLAAGADAAQ 235 (369)
T ss_dssp CSHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 688999999999998864
No 228
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=75.01 E-value=12 Score=24.60 Aligned_cols=101 Identities=8% Similarity=-0.147 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCeE-EEec---CHHHHHHHHhcCCCccEE-EEeCCC---CCCCHH-HHHHHHHhhCCCCcEEEEec
Q 045936 37 MIRRIHSMILKSVGFKV-EVAE---NGKEAVDLFRTGAKFHIV-FIDMEM---PVMDGI-EATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~v-~~~~---~~~~~l~~l~~~~~~dli-l~d~~~---~~~~g~-~~~~~l~~~~~~~~ii~lt~ 107 (145)
.....+...+++.|..+ ..+. +..+..+.+.. ...|.| +.=... .+.+.. +.++.++.. +.|+++. .
T Consensus 90 ~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~-~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~--~~pi~v~-G 165 (207)
T 3ajx_A 90 STIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRA-LGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA--RVPFSVA-G 165 (207)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-TTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH--TSCEEEE-S
T ss_pred HHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHH-hCCCEEEEEecccccccCCCchHHHHHHhhCC--CCCEEEE-C
Confidence 34445555666667555 2232 55554444433 237877 431111 222212 344444332 5666554 4
Q ss_pred CCChHHHHHHHHhcccEEe-----eCCCCHHHHHHHHHH
Q 045936 108 RNSETEREVFMQAGLDLCY-----TKPLTMAKIVPLLEE 141 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~l~~ 141 (145)
.-..+....++++|++.+. .+.-++.+-.+.+++
T Consensus 166 GI~~~~~~~~~~aGad~vvvGsaI~~~~dp~~~~~~~~~ 204 (207)
T 3ajx_A 166 GVKVATIPAVQKAGAEVAVAGGAIYGAADPAAAAKELRA 204 (207)
T ss_dssp SCCGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHcCCCEEEEeeeccCCCCHHHHHHHHHH
Confidence 4457788888999999874 444455555544443
No 229
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=74.76 E-value=10 Score=26.20 Aligned_cols=80 Identities=10% Similarity=0.186 Sum_probs=44.5
Q ss_pred CCcEEEEEeCCHHHH--------------HHHHHHHHhcCCeEEEec--CHHHHH--HHHhcCCCccEEEE--eCCCCCC
Q 045936 25 RPYFALVVDDDPMIR--------------RIHSMILKSVGFKVEVAE--NGKEAV--DLFRTGAKFHIVFI--DMEMPVM 84 (145)
Q Consensus 25 ~~~~vlii~~~~~~~--------------~~l~~~l~~~g~~v~~~~--~~~~~l--~~l~~~~~~dlil~--d~~~~~~ 84 (145)
.+.+|||.....-.. ..+..+|+..||.|...+ +.+..+ ..+. .+|+||+ +......
T Consensus 6 ~~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~---~~DvvV~~~~~~~~~l 82 (252)
T 1t0b_A 6 TPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD---RCDVLVWWGHIAHDEV 82 (252)
T ss_dssp CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH---TCSEEEEECSSCGGGS
T ss_pred CCcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHh---cCCEEEEecCCCCCcC
Confidence 357899988654222 245788888999987655 544332 2232 4898886 2233223
Q ss_pred CHHHHHHHHHh-hCCCCcEEEEecC
Q 045936 85 DGIEATKAMRA-MKVESKIVGVTSR 108 (145)
Q Consensus 85 ~g~~~~~~l~~-~~~~~~ii~lt~~ 108 (145)
+. +..+.+++ -.....+|.+-+.
T Consensus 83 ~~-~~~~al~~~V~~GgG~vgiH~a 106 (252)
T 1t0b_A 83 KD-EVVERVHRRVLEGMGLIVLHSG 106 (252)
T ss_dssp CH-HHHHHHHHHHHTTCEEEEEGGG
T ss_pred CH-HHHHHHHHHHHcCCCEEEEccc
Confidence 32 22333333 2346778877443
No 230
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=74.45 E-value=6 Score=26.80 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=20.9
Q ss_pred CccEEEEeC-CCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 71 KFHIVFIDM-EMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 71 ~~dlil~d~-~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
.+|+|++|= +.-+.+-+++++.+... +.+||+..-
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~~--~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLANR--GYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhhC--CCEEEEEec
Confidence 489999993 33334455666665442 566665444
No 231
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=74.24 E-value=9.7 Score=21.57 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=32.9
Q ss_pred CCcEEEEecCCChH----HHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 99 ESKIVGVTSRNSET----EREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 99 ~~~ii~lt~~~~~~----~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
..|.+++....+.. ....+...|+..-+.|.-++++|..+++..++
T Consensus 51 gkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflk 100 (112)
T 2lnd_A 51 GKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLK 100 (112)
T ss_dssp CSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHH
Confidence 34555554444433 35567788988888899999999999988764
No 232
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=74.07 E-value=18 Score=24.50 Aligned_cols=81 Identities=10% Similarity=0.065 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCccEEE-EeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe------eC
Q 045936 59 GKEAVDLFRTGAKFHIVF-IDMEMPVM---DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY------TK 128 (145)
Q Consensus 59 ~~~~l~~l~~~~~~dlil-~d~~~~~~---~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l------~k 128 (145)
..+..+.+.. ..++.++ .+..-.+. ..++.++.+++.. ..|+++-.+-.+.+....++..|+++++ ..
T Consensus 153 ~~e~~~~~~~-~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHH-TTCSEEEEEETTTTTSCSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHH-CCCCEEEEEeccCCCCCCCCCHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 4455455544 3467444 44433221 2377888888653 6888888777777888888899999874 34
Q ss_pred CCCHHHHHHHHHH
Q 045936 129 PLTMAKIVPLLEE 141 (145)
Q Consensus 129 P~~~~~l~~~l~~ 141 (145)
|+++++....+++
T Consensus 231 ~~~~~~~~~~l~~ 243 (253)
T 1thf_D 231 EIDVRELKEYLKK 243 (253)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6677777766543
No 233
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=73.76 E-value=9.6 Score=25.36 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeC
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~k 128 (145)
+.+++.+.. ..||++ ++ ||+.- .++++.+++. ..+|+|+=.--.+.+....++.+||+..-+.
T Consensus 117 ~~~~~~i~~-~~PD~i--Ei-LPGi~-p~iI~~i~~~-~~~PiIaGGlI~~~edv~~al~aGA~aVsTs 179 (192)
T 3kts_A 117 NKGVALIQK-VQPDCI--EL-LPGII-PEQVQKMTQK-LHIPVIAGGLIETSEQVNQVIASGAIAVTTS 179 (192)
T ss_dssp HHHHHHHHH-HCCSEE--EE-ECTTC-HHHHHHHHHH-HCCCEEEESSCCSHHHHHHHHTTTEEEEEEC
T ss_pred HHHHHHHhh-cCCCEE--EE-CCchh-HHHHHHHHHh-cCCCEEEECCcCCHHHHHHHHHcCCeEEEeC
Confidence 346666666 568976 22 36544 3788888775 3688887777889999999999999987654
No 234
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=73.55 E-value=21 Score=25.09 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=57.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGF--KVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
.+++++++.+. ..++...+..|. .+......++....+.. .|++++-.... .-|..+++.+.. .+|+|.
T Consensus 229 ~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~---ad~~v~ps~~e-~~~~~~~Ea~a~---G~Pvi~ 299 (374)
T 2iw1_A 229 TLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA---ADLLLHPAYQE-AAGIVLLEAITA---GLPVLT 299 (374)
T ss_dssp EEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH---CSEEEECCSCC-SSCHHHHHHHHH---TCCEEE
T ss_pred eEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh---cCEEEeccccC-CcccHHHHHHHC---CCCEEE
Confidence 35666665442 445555554442 23333333334444432 47777654332 234455555433 567765
Q ss_pred EecCCChHHHHHHHHhcccEEeeC-CCCHHHHHHHHHHHhh
Q 045936 105 VTSRNSETEREVFMQAGLDLCYTK-PLTMAKIVPLLEELQK 144 (145)
Q Consensus 105 lt~~~~~~~~~~~~~~g~~~~l~k-P~~~~~l~~~l~~~~~ 144 (145)
....... ..+..|..+++.. |.+.+++...+.++++
T Consensus 300 ~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 300 TAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp ETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred ecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 4333332 3445567788887 8999999999988764
No 235
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=73.25 E-value=22 Score=25.34 Aligned_cols=91 Identities=10% Similarity=0.124 Sum_probs=56.4
Q ss_pred EEEEeCCHHHHHHHHHHH---H-hcC-Ce-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 29 ALVVDDDPMIRRIHSMIL---K-SVG-FK-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l---~-~~g-~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
|||-|++-.....+...+ + ..+ .. .+.+.+.+++.+.+.. . +|+|.+|- ++...--+.++.++ . -..
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a-G-aDiImLDn-~s~~~l~~av~~~~---~-~v~ 253 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN-N-VDMILLDN-MSISEIKKAVDIVN---G-KSV 253 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT-T-CSEEEEES-CCHHHHHHHHHHHT---T-SSE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc-C-CCEEEECC-CCHHHHHHHHHhhc---C-ceE
Confidence 677676654443233332 2 222 22 3489999999999986 3 89999994 22222222333332 2 245
Q ss_pred EEEecCCChHHHHHHHHhcccEEe
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+..++.-+.+.+......|+|.+-
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 667788888888888899998763
No 236
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=73.23 E-value=22 Score=25.12 Aligned_cols=86 Identities=9% Similarity=0.043 Sum_probs=52.4
Q ss_pred cEEEEE-e-CCHHH---HHHHHHHHHhcCCeEEE--e----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 045936 27 YFALVV-D-DDPMI---RRIHSMILKSVGFKVEV--A----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA 95 (145)
Q Consensus 27 ~~vlii-~-~~~~~---~~~l~~~l~~~g~~v~~--~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~ 95 (145)
.+|.++ + ++... ...++..++..|..+.. + .+....+..+.. ..+|+|++... +.....+++.+++
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~--~~~a~~~~~~~~~ 226 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMS-FNPDAIYITGY--YPEIALISRQARQ 226 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHH-TCCSEEEECSC--HHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHh-cCCCEEEEccc--hhHHHHHHHHHHH
Confidence 367666 3 44433 24566777778876542 1 355666777766 46999998432 3446678888888
Q ss_pred hCCCCcEEEEecCCChHHHH
Q 045936 96 MKVESKIVGVTSRNSETERE 115 (145)
Q Consensus 96 ~~~~~~ii~lt~~~~~~~~~ 115 (145)
.....|++.......+....
T Consensus 227 ~g~~~~~~~~~~~~~~~~~~ 246 (366)
T 3td9_A 227 LGFTGYILAGDGADAPELIE 246 (366)
T ss_dssp TTCCSEEEECGGGCSTHHHH
T ss_pred cCCCceEEeeCCcCCHHHHH
Confidence 77777765444444444443
No 237
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=73.17 E-value=19 Score=25.77 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=40.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 72 FHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 72 ~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.|++++-.... .-|..+++.+. ..+|+|........ .....|-.+++..|-+.+++...|.++++
T Consensus 285 adv~v~ps~~e-~~~~~~~EAma---~G~PvI~~~~~~~~----e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSEKE-SFGLVLLEAMA---CGVPCIGTRVGGIP----EVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCSCC-SCCHHHHHHHH---TTCCEEEECCTTST----TTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccccC-CCchHHHHHHh---cCCCEEEecCCChH----HHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 57777654432 23444555443 35677654333222 23345667889999999999999987764
No 238
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=73.16 E-value=16 Score=23.73 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=45.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCC-eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGF-KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA 95 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~-~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~ 95 (145)
+|.-+|-++...+..+..+...|. .+. ...|..+.+.. ....+|+|++|.-.......++++.+.+
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ--KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS--CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh--cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 799999999999999988887775 343 44555554322 1246999999865333445566777765
No 239
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=72.92 E-value=23 Score=25.20 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=45.5
Q ss_pred EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 53 VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 53 v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
...+.+.+++.+.+.. ..|.|.+|.. . ...+ +..+.++..+|++++.+ ++.-+.+.+......|++.+-
T Consensus 201 ~vev~tlee~~~A~~a--GaD~I~ld~~-~-~~~l~~~v~~l~~~~~~~~I~A-SGGIt~~ni~~~~~aGaD~i~ 270 (299)
T 2jbm_A 201 EVECSSLQEAVQAAEA--GADLVLLDNF-K-PEELHPTATVLKAQFPSVAVEA-SGGITLDNLPQFCGPHIDVIS 270 (299)
T ss_dssp EEEESSHHHHHHHHHT--TCSEEEEESC-C-HHHHHHHHHHHHHHCTTSEEEE-ESSCCTTTHHHHCCTTCCEEE
T ss_pred EEecCCHHHHHHHHHc--CCCEEEECCC-C-HHHHHHHHHHhhccCCCeeEEE-ECCCCHHHHHHHHHCCCCEEE
Confidence 3478888888888775 3899999862 1 1122 23334444456676654 455577888888999997763
No 240
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=72.77 E-value=24 Score=25.39 Aligned_cols=105 Identities=15% Similarity=0.062 Sum_probs=52.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-cCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKS-VGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~-~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
.+++|.|++--..-...+..+... .+++++ .++...+..+.+.....+..-..+ +--++ +.. +.+-+
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~------~~~~l---l~~--~~~D~ 90 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYN------DYHDL---IND--KDVEV 90 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEES------SHHHH---HHC--TTCCE
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeC------CHHHH---hcC--CCCCE
Confidence 467999999877655555555423 467765 344322222222220111111111 11122 222 23344
Q ss_pred EEEecCC--ChHHHHHHHHhcccEEeeCCC--CHHHHHHHHH
Q 045936 103 VGVTSRN--SETEREVFMQAGLDLCYTKPL--TMAKIVPLLE 140 (145)
Q Consensus 103 i~lt~~~--~~~~~~~~~~~g~~~~l~kP~--~~~~l~~~l~ 140 (145)
++++.+. -.+....++++|..-++-||+ +.++..+.++
T Consensus 91 V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~ 132 (357)
T 3ec7_A 91 VIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIE 132 (357)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHH
Confidence 4444433 344566778889888888986 4455544443
No 241
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=72.11 E-value=5.9 Score=27.24 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=56.7
Q ss_pred HHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCCC---C-CHHHHHHHHHhh-C-CCCcEEEEecCCChH
Q 045936 41 IHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMPV---M-DGIEATKAMRAM-K-VESKIVGVTSRNSET 112 (145)
Q Consensus 41 ~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~---~-~g~~~~~~l~~~-~-~~~~ii~lt~~~~~~ 112 (145)
.....|+..|+.+. -+.++...+..+.. -++|.|=+|-.+-. . ....+++.+-.. + .+.. ++..+-.+.+
T Consensus 157 ~~l~~L~~~G~~ialDDfG~g~ssl~~L~~-l~~d~iKiD~~~v~~~~~~~~~~~l~~ii~~~~~~~~~-viaeGVEt~~ 234 (268)
T 3hv8_A 157 QLTQGLATLHCQAAISQFGCSLNPFNALKH-LTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKL-SIVPFVESAS 234 (268)
T ss_dssp HHHHHHHHTTCEEEEEEETCSSSTTGGGGT-CCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCE-EEECCCCSHH
T ss_pred HHHHHHHHCCCEEEEeCCCCChHHHHHHHh-CCCCEEEECHHHHHhhhcChhHHHHHHHHHHHHHcCCC-EEEEeeCCHH
Confidence 33455677788765 56666666676665 57999999954421 1 223344433322 1 2333 4456777888
Q ss_pred HHHHHHHhcccE----EeeCCCCHHH
Q 045936 113 EREVFMQAGLDL----CYTKPLTMAK 134 (145)
Q Consensus 113 ~~~~~~~~g~~~----~l~kP~~~~~ 134 (145)
....+...|++. |+.||...++
T Consensus 235 ~~~~l~~lG~~~~QG~~~~~P~~~~~ 260 (268)
T 3hv8_A 235 VLATLWQAGATYIQGYYLQGPSQAMD 260 (268)
T ss_dssp HHHHHHHHTCSEECSTTTCCCBSSCC
T ss_pred HHHHHHHcCCCEeccCeecCCCcccc
Confidence 888888999865 3678876554
No 242
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=72.01 E-value=21 Score=24.46 Aligned_cols=41 Identities=7% Similarity=-0.041 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 86 GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
..+.++.+++.. +.||++-.+-.+++....++..||+.++.
T Consensus 189 ~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvV 229 (262)
T 1rd5_A 189 VESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVII 229 (262)
T ss_dssp HHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 456778887754 67888776666688898999999999753
No 243
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=72.00 E-value=16 Score=26.25 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=48.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcC-CeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCC-----HHHHHHHHHhh-C
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVG-FKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMD-----GIEATKAMRAM-K 97 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g-~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~-----g~~~~~~l~~~-~ 97 (145)
..+|..+|-++...+..+..+...+ -++. ...|+.+.+..... ..||+|++|...+... ..++++.+++. .
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~-~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~Lk 191 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP-ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLA 191 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT-TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEE
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC-CCCCEEEECCCCccccchhhhHHHHHHHHHHhcC
Confidence 3478999999998888887775321 2232 56777776554333 4699999997554321 24677777664 3
Q ss_pred CCCcEE
Q 045936 98 VESKIV 103 (145)
Q Consensus 98 ~~~~ii 103 (145)
++..++
T Consensus 192 pgGvlv 197 (317)
T 3gjy_A 192 PGGLYV 197 (317)
T ss_dssp EEEEEE
T ss_pred CCcEEE
Confidence 444333
No 244
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=71.99 E-value=21 Score=24.50 Aligned_cols=82 Identities=10% Similarity=-0.031 Sum_probs=45.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc-CCeEEEecCH-HHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSV-GFKVEVAENG-KEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~-g~~v~~~~~~-~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
++|.|+.-.-.+-..+...+... +++++.+.+. ++.-..+.. .+| +++|...|. ...+.+....+. .+++++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~--~~D-vvIDfT~p~-a~~~~~~~a~~~--g~~~Vi 74 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDG--NTE-VVIDFTHPD-VVMGNLEFLIDN--GIHAVV 74 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHT--TCC-EEEECSCTT-THHHHHHHHHHT--TCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhcc--CCc-EEEEccChH-HHHHHHHHHHHc--CCCEEE
Confidence 47888887666666666666544 7887644322 111122222 478 566887664 455555554433 466666
Q ss_pred EecCCChHHH
Q 045936 105 VTSRNSETER 114 (145)
Q Consensus 105 lt~~~~~~~~ 114 (145)
-|...+.+..
T Consensus 75 gTTG~~~e~~ 84 (245)
T 1p9l_A 75 GTTGFTAERF 84 (245)
T ss_dssp CCCCCCHHHH
T ss_pred cCCCCCHHHH
Confidence 5555555443
No 245
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=71.64 E-value=25 Score=25.12 Aligned_cols=86 Identities=9% Similarity=0.066 Sum_probs=51.5
Q ss_pred EEEEE-eCCHHH---HHHHHHHHHhcCCeEEE---e----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALVV-DDDPMI---RRIHSMILKSVGFKVEV---A----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii-~~~~~~---~~~l~~~l~~~g~~v~~---~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|.++ +++..- ...++..++..|..+.. + .+....+..+.. ..||+|++.. .+.....+++.+++.
T Consensus 145 ~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-~~~dav~~~~--~~~~a~~~~~~~~~~ 221 (392)
T 3lkb_A 145 KVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQ-AGVEYVVHQN--VAGPVANILKDAKRL 221 (392)
T ss_dssp EEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHH-TTCCEEEEES--CHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHh-cCCCEEEEec--CcchHHHHHHHHHHc
Confidence 55444 444332 24567777777876542 2 245566776766 4699998754 234566788888887
Q ss_pred CCCCcEEEEecCCChHHHHH
Q 045936 97 KVESKIVGVTSRNSETEREV 116 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~ 116 (145)
....|++......++.....
T Consensus 222 g~~~~~~~~~~~~~~~~~~~ 241 (392)
T 3lkb_A 222 GLKMRHLGAHYTGGPDLIAL 241 (392)
T ss_dssp TCCCEEEECGGGCSHHHHHH
T ss_pred CCCceEEEecCcccHHHHHh
Confidence 77777665444445444433
No 246
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=71.41 E-value=23 Score=24.70 Aligned_cols=38 Identities=8% Similarity=-0.056 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.++++.+++.. +.|+++=.+-.+++....+ .|||+.+.
T Consensus 191 ~~~v~~vr~~~-~~Pv~vGfGI~t~e~a~~~--~~ADgVIV 228 (271)
T 1ujp_A 191 KDLVRRIKART-ALPVAVGFGVSGKATAAQA--AVADGVVV 228 (271)
T ss_dssp HHHHHHHHTTC-CSCEEEESCCCSHHHHHHH--TTSSEEEE
T ss_pred HHHHHHHHhhc-CCCEEEEcCCCCHHHHHHh--cCCCEEEE
Confidence 46778888754 6787766666668777775 89999864
No 247
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=71.21 E-value=14 Score=22.28 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=46.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhc--------------------CCCccEEEEeCCCCCCCHH
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRT--------------------GAKFHIVFIDMEMPVMDGI 87 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~--------------------~~~~dlil~d~~~~~~~g~ 87 (145)
+|+|++-.. ....+...|...|+.+..+....+..+.+.. -...|++++-.. ....-.
T Consensus 8 ~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~-~~~~n~ 85 (141)
T 3llv_A 8 EYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS-DDEFNL 85 (141)
T ss_dssp SEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS-CHHHHH
T ss_pred EEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC-CHHHHH
Confidence 456666543 4444555555556555544333333222221 023566665443 111123
Q ss_pred HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 88 EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 88 ~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
..+..+++.. ...+++.+. +......+...|++..+.
T Consensus 86 ~~~~~a~~~~-~~~iia~~~--~~~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 86 KILKALRSVS-DVYAIVRVS--SPKKKEEFEEAGANLVVL 122 (141)
T ss_dssp HHHHHHHHHC-CCCEEEEES--CGGGHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhC-CceEEEEEc--ChhHHHHHHHcCCCEEEC
Confidence 3455556555 555554443 334555667888876554
No 248
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=70.97 E-value=24 Score=24.73 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=52.1
Q ss_pred EEEEE-eCCHHHH---HHHHHHHHhcCCeEE---Ee----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALVV-DDDPMIR---RIHSMILKSVGFKVE---VA----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii-~~~~~~~---~~l~~~l~~~g~~v~---~~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|.++ .++.... ..++..++..|..+. .+ .+....+..+.. ..||+|++... ......+++.+++.
T Consensus 141 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~-~~~d~i~~~~~--~~~a~~~~~~~~~~ 217 (358)
T 3hut_A 141 SVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIED-EAPQAIYLAMA--YEDAAPFLRALRAR 217 (358)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH-HCCSEEEEESC--HHHHHHHHHHHHHT
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHh-cCCCEEEEccC--chHHHHHHHHHHHc
Confidence 55444 4544333 445667777787654 12 355666676665 46898888642 22456788888888
Q ss_pred CCCCcEEEEecCCChHHHHH
Q 045936 97 KVESKIVGVTSRNSETEREV 116 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~ 116 (145)
....|++.............
T Consensus 218 g~~~p~~~~~~~~~~~~~~~ 237 (358)
T 3hut_A 218 GSALPVYGSSALYSPKFIDL 237 (358)
T ss_dssp TCCCCEEECGGGCSHHHHHH
T ss_pred CCCCcEEecCcccCHHHHHH
Confidence 77788765555555544433
No 249
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=70.96 E-value=18 Score=26.28 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred CccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 71 KFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 71 ~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.++++.++....... .++.++++++..+..|++ +....+.+....+.++|++.+..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi-~g~v~t~e~A~~a~~aGaD~I~v 188 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIM-AGNVVTGEMVEELILSGADIIKV 188 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEE-EEeCCCHHHHHHHHHhCCCEEEE
No 250
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=70.79 E-value=13 Score=26.40 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=39.5
Q ss_pred CHHHHHHHHHhhCCCCcEEEEec--CCChHHHHHHHHhcccEEe-----eCCCCHHHHHHHHHHH
Q 045936 85 DGIEATKAMRAMKVESKIVGVTS--RNSETEREVFMQAGLDLCY-----TKPLTMAKIVPLLEEL 142 (145)
Q Consensus 85 ~g~~~~~~l~~~~~~~~ii~lt~--~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~l~~~ 142 (145)
..+++++.+++. +.+||+++++ -..++....+++.|+++++ .+.-++....+.+...
T Consensus 185 ad~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~A 248 (291)
T 3o07_A 185 VPVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEA 248 (291)
T ss_dssp SCHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHH
Confidence 347888888776 5688887733 3468888889999999975 3434466666555444
No 251
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=70.78 E-value=21 Score=24.05 Aligned_cols=80 Identities=10% Similarity=-0.106 Sum_probs=46.4
Q ss_pred CCcEEEEEeCC--HHHHHHHHHHHHhcCCeEEEe-c--CHHHHHHHHhc-CCCccEEEEeCCCCCCCHH-HHHHHHHhhC
Q 045936 25 RPYFALVVDDD--PMIRRIHSMILKSVGFKVEVA-E--NGKEAVDLFRT-GAKFHIVFIDMEMPVMDGI-EATKAMRAMK 97 (145)
Q Consensus 25 ~~~~vlii~~~--~~~~~~l~~~l~~~g~~v~~~-~--~~~~~l~~l~~-~~~~dlil~d~~~~~~~g~-~~~~~l~~~~ 97 (145)
...+|+|.+-. .-+-..+...|.+.|+.|..+ . ...+.++.+.. ......+-+| +.+.+.. .+++.+.+.+
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D--v~~~~~v~~~~~~~~~~~ 90 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCD--VADDAQIDALFASLKTHW 90 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECC--TTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECC--CCCHHHHHHHHHHHHHHc
Confidence 45578888866 778888888888889887644 2 22344444322 1223344444 4444443 4666776665
Q ss_pred CCCcEEEEe
Q 045936 98 VESKIVGVT 106 (145)
Q Consensus 98 ~~~~ii~lt 106 (145)
..+-+++-.
T Consensus 91 g~id~lv~n 99 (271)
T 3ek2_A 91 DSLDGLVHS 99 (271)
T ss_dssp SCEEEEEEC
T ss_pred CCCCEEEEC
Confidence 545555443
No 252
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=70.72 E-value=22 Score=24.10 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=44.5
Q ss_pred ccEEEEeCCCCCCC-------HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee-----CCCCHHHHHHHH
Q 045936 72 FHIVFIDMEMPVMD-------GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT-----KPLTMAKIVPLL 139 (145)
Q Consensus 72 ~dlil~d~~~~~~~-------g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~l~~~l 139 (145)
.|.|++-.-.|+.. .++-++.+|+..++.++ .+...-+.+....+.++||+.++. +.-++.+-...+
T Consensus 135 ~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l 213 (228)
T 3ovp_A 135 IDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDI-EVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLL 213 (228)
T ss_dssp CSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEE-EEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHH
T ss_pred CCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCE-EEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 68777655555543 35557777776655554 566666788889999999999753 333455444444
Q ss_pred HH
Q 045936 140 EE 141 (145)
Q Consensus 140 ~~ 141 (145)
++
T Consensus 214 ~~ 215 (228)
T 3ovp_A 214 RN 215 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 253
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=70.36 E-value=6.6 Score=27.71 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=41.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
.++|.|+.........+..+|+..|+.+.......+. + ..+|+|++ -+.||. ++...+.....+|++-+
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~---~---~~~DlvIv----lGGDGT-~L~aa~~~~~~~PilGI 97 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEE---L---ENFDFIVS----VGGDGT-ILRILQKLKRCPPIFGI 97 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGG---G---GGSSEEEE----EECHHH-HHHHHTTCSSCCCEEEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEccccccc---c---CCCCEEEE----ECCCHH-HHHHHHHhCCCCcEEEE
Confidence 4678777653322677888999999987654432211 1 24787764 256663 34444443222888877
Q ss_pred ec
Q 045936 106 TS 107 (145)
Q Consensus 106 t~ 107 (145)
..
T Consensus 98 N~ 99 (278)
T 1z0s_A 98 NT 99 (278)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 254
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=70.20 E-value=25 Score=24.69 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=49.4
Q ss_pred EEEE-EeCCHHH---HHHHHHHHHhcCCeEE---Ee----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALV-VDDDPMI---RRIHSMILKSVGFKVE---VA----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vli-i~~~~~~---~~~l~~~l~~~g~~v~---~~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|.+ ..++..- ...++..++..|..+. .+ .+....+..+.. ..+|+|++... +.....+++.+++.
T Consensus 141 ~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~--~~~a~~~~~~~~~~ 217 (368)
T 4eyg_A 141 KVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKD-AKPDAMFVFVP--AGQGGNFMKQFAER 217 (368)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHH-HCCSEEEEECC--TTCHHHHHHHHHHT
T ss_pred EEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHh-cCCCEEEEecc--chHHHHHHHHHHHc
Confidence 4544 4454433 3556777777887654 12 355667777765 46999998543 34788889998886
Q ss_pred CCC---CcEEEEecCCChHH
Q 045936 97 KVE---SKIVGVTSRNSETE 113 (145)
Q Consensus 97 ~~~---~~ii~lt~~~~~~~ 113 (145)
... +|++......+...
T Consensus 218 g~~~~~v~~~~~~~~~~~~~ 237 (368)
T 4eyg_A 218 GLDKSGIKVIGPGDVMDDDL 237 (368)
T ss_dssp TGGGTTCEEEEETTTTCHHH
T ss_pred CCCcCCceEEecCcccCHHH
Confidence 554 44443332334433
No 255
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=69.94 E-value=24 Score=25.05 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=43.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEEeeC
Q 045936 72 FHIVFIDMEMPVMDGIEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 72 ~dlil~d~~~~~~~g~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~l~k 128 (145)
..+|.+|..- .....++++.+++... .+|+++=.+-.+.+....++..||+..+.-
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG 256 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 4788888654 3334688999988653 678887777888889999999999998644
No 256
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=69.91 E-value=27 Score=24.89 Aligned_cols=66 Identities=12% Similarity=0.024 Sum_probs=44.8
Q ss_pred EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 53 VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 53 v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
.+.+.+.+++.+.+.. .+|+|.+|-. +--++-+..+...++ ..+..++.-+.+.+......|+|.+
T Consensus 213 eVEvdtlde~~eAl~a--GaD~I~LDn~----~~~~l~~av~~i~~~-v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 213 QIEVETLDQLRTALAH--GARSVLLDNF----TLDMMRDAVRVTEGR-AVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEESSHHHHHHHHHT--TCEEEEEESC----CHHHHHHHHHHHTTS-EEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEeCCHHHHHHHHHc--CCCEEEECCC----CHHHHHHHHHHhCCC-CeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 3479999999888876 3899999952 222332233333333 3455777778888888899999876
No 257
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=69.61 E-value=27 Score=24.74 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=31.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 71 KFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 71 ~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..|.+++-..- +......+..+++.+++.++++-+. +++........|++..+
T Consensus 177 ~a~~vi~~~~~-d~~n~~~~~~ar~~~~~~~iiar~~--~~~~~~~l~~~G~d~vi 229 (336)
T 1lnq_A 177 GARAVIVDLES-DSETIHCILGIRKIDESVRIIAEAE--RYENIEQLRMAGADQVI 229 (336)
T ss_dssp TEEEEEECCSS-HHHHHHHHHHHHTTCTTSEEEEECS--SGGGHHHHHHTTCSEEE
T ss_pred hccEEEEcCCc-cHHHHHHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 46767664421 1223445566677777767665543 44445566688998765
No 258
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.53 E-value=13 Score=26.30 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=42.0
Q ss_pred CccEEEEeCCCCCCC--HH-HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFIDMEMPVMD--GI-EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d~~~~~~~--g~-~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+.++|+|--.. .+ .. .+.+.+.+...++.+|+++..... ....+...+.-+-.+|.+.+++...+++..
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~--l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP--IIAPIKSQCLLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS--SCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence 477999984222 33 22 355555554445666666654432 223344455666678999999999888764
No 259
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=69.11 E-value=23 Score=23.65 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=62.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCC----eEE-EecCHHHH--------------HHH-------HhcCCCccEEEEeCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGF----KVE-VAENGKEA--------------VDL-------FRTGAKFHIVFIDME 80 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~----~v~-~~~~~~~~--------------l~~-------l~~~~~~dlil~d~~ 80 (145)
-+|.-+|.++...+..+..++..|+ .+. ...+..+. +.. +....+||+|++|..
T Consensus 52 g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~ 131 (202)
T 3cvo_A 52 KHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR 131 (202)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC
Confidence 5899999999999999999998886 343 33332111 111 111147999999974
Q ss_pred CCCCCHHHHHHH-HHhhCCCCcEEEEec---CCChHHHHHHHHh----c-ccEEe--eCCCCHHHHHHHHHHHh
Q 045936 81 MPVMDGIEATKA-MRAMKVESKIVGVTS---RNSETEREVFMQA----G-LDLCY--TKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 81 ~~~~~g~~~~~~-l~~~~~~~~ii~lt~---~~~~~~~~~~~~~----g-~~~~l--~kP~~~~~l~~~l~~~~ 143 (145)
- ....... ++...++ .+|++-+ ..........+.. | ...|- +.+++.+.|...++...
T Consensus 132 k----~~~~~~~~l~~l~~G-G~Iv~DNv~~r~~y~~v~~~~~~~~~~~~~a~f~~~p~~~~~~~~~~~~~~~~ 200 (202)
T 3cvo_A 132 F----RVGCALATAFSITRP-VTLLFDDYSQRRWQHQVEEFLGAPLMIGRLAAFQVEPQPIPPGSLMQLIRTMT 200 (202)
T ss_dssp S----HHHHHHHHHHHCSSC-EEEEETTGGGCSSGGGGHHHHCCCEEETTEEEEEECCCCCCGGGHHHHHHHHT
T ss_pred C----chhHHHHHHHhcCCC-eEEEEeCCcCCcchHHHHHHHhHHhhcCceEEEEeCCCCCCHHHHHHHHHHhc
Confidence 2 2233332 3333343 3455533 2223344444431 2 22233 44667788887776543
No 260
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=69.09 E-value=21 Score=23.40 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=40.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe--EE-EecCHHHHHHHHhc---CCCccEEEEeCCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK--VE-VAENGKEAVDLFRT---GAKFHIVFIDMEMP 82 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~--v~-~~~~~~~~l~~l~~---~~~~dlil~d~~~~ 82 (145)
..+|.-+|-++......+..+...|.. +. ...+..+.+..+.. ...+|+|++|....
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 458999999999999999988877752 43 56676666554431 03699999996443
No 261
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=69.08 E-value=31 Score=25.18 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+.++.+.+ ..+|+|.+|....... -.+.++.+++.. ..|+++ ......+....+.+.|++....
T Consensus 107 ~e~a~~l~e-aGad~I~ld~a~G~~~~~~~~i~~i~~~~-~~~Viv-g~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVE-AGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHH-TTCSEEEECCSCCSBHHHHHHHHHHHHHC-CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH-cCcCeEEEeCCCCCcHHHHHHHHHHHHhc-CCcEEE-ccCCCHHHHHHHHHcCcCEEEE
Confidence 344444433 2489999886654332 246777777765 566654 3445677888899999998765
No 262
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=68.83 E-value=21 Score=23.22 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=48.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC--CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG--FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA 95 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g--~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~ 95 (145)
-.+++.++++...+.++...+.+| |.+. ..+....++.. .-.++-+.|-+.+--+++..|+.
T Consensus 34 ~~iil~~~D~~v~esv~dV~~rwGG~F~ve-~~~w~~~i~~w------~G~VVHLTMYG~~i~dvi~~Ir~ 97 (178)
T 2o3a_A 34 KGIYFDTEDKSVFESVRDVVERWGGDFFIK-AVSWKKLLREF------DGLKVHLTMYGIPLPQKLEEIKR 97 (178)
T ss_dssp SEEEESSCCHHHHHHHHHHHHHHCSCCEEE-ECCHHHHHHHC------CSEEEEEEEEEEEHHHHHHHHHT
T ss_pred CeeEEeCCCHHHHHHHHHHHHhcCCceEEE-ecCHHHHHHHc------CCEEEEEecCCCchHHHHHHhhc
Confidence 368999999999999999999987 7787 77766665543 33466677778887888899986
No 263
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=68.71 E-value=8.4 Score=26.63 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec---------CHHHHHHHHhcCCCccEEEEeCCCCCCCHHH-HHHHHH
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAE---------NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE-ATKAMR 94 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~---------~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~-~~~~l~ 94 (145)
.+.+||++-.+. .+..+...|+..|+.+..+. +.++....+.. ..+|.|++-. .++.+ +.+.+.
T Consensus 140 ~g~~vLi~rg~~-~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~-~~~d~v~ftS----~s~v~~~~~~~~ 213 (269)
T 3re1_A 140 PGSRVLIMRGNE-GRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEV-ERLNGLVVSS----GQGFEHLLQLAG 213 (269)
T ss_dssp SSCEEEEEECSS-CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHH-TTCCEEECSS----HHHHTTTHHHHG
T ss_pred CCCEEEEEccCc-cHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHc-CCCCEEEEcC----HHHHHHHHHHhh
Confidence 455888887653 46778888888886654211 23334455555 4689887532 22332 333332
Q ss_pred h---hCCCCcEEEEecCCChHHHHHHHHhcccE-EeeCCCCHHHHHHHHHHHh
Q 045936 95 A---MKVESKIVGVTSRNSETEREVFMQAGLDL-CYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 95 ~---~~~~~~ii~lt~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~l~~~~ 143 (145)
. ....++++.+ .+.....+.+.|... ++.+..+.+.|...|.+.+
T Consensus 214 ~~~~~l~~~~~~aI----G~~Ta~~l~~~G~~~~~va~~~t~~~l~~al~~~~ 262 (269)
T 3re1_A 214 DSWPDLAGLPLFVP----SPRVASLAQAAGARNVIDCRGASAAALLAALRDQP 262 (269)
T ss_dssp GGHHHHTTSCEEES----SHHHHHHHHHHTCSSEEECSSSSHHHHHHHHHHSC
T ss_pred HHHHHHhCCeEEEE----CHHHHHHHHHCCCCceEECCCCCHHHHHHHHHHHh
Confidence 2 1235566554 344556667788755 4577789999999887654
No 264
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=68.49 E-value=33 Score=25.34 Aligned_cols=77 Identities=16% Similarity=0.027 Sum_probs=49.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe---EE-EecCHHHHHH-HHhcCCCccEEEEeCCCCCCCHHHHHHHHHh-hCCCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK---VE-VAENGKEAVD-LFRTGAKFHIVFIDMEMPVMDGIEATKAMRA-MKVES 100 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~---v~-~~~~~~~~l~-~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~-~~~~~ 100 (145)
-+|..+|-++...+.++.-++.+|.. +. ...|..+.+. .. . ..+|+|++|- .+.. .+++....+ ..+.
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-~-~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~g- 151 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-G-FGFDYVDLDP--FGTP-VPFIESVALSMKRG- 151 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-S-SCEEEEEECC--SSCC-HHHHHHHHHHEEEE-
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-C-CCCcEEEECC--CcCH-HHHHHHHHHHhCCC-
Confidence 47999999999999999999988863 44 4556666554 33 2 4699999996 3322 245554433 2333
Q ss_pred cEEEEecCC
Q 045936 101 KIVGVTSRN 109 (145)
Q Consensus 101 ~ii~lt~~~ 109 (145)
.+++++...
T Consensus 152 Gll~~t~t~ 160 (392)
T 3axs_A 152 GILSLTATD 160 (392)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEecc
Confidence 366666543
No 265
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=68.47 E-value=15 Score=23.99 Aligned_cols=29 Identities=10% Similarity=-0.060 Sum_probs=20.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEV 55 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~ 55 (145)
|+|+|.+....+-..+...|...|+.|..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~ 29 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLA 29 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEE
Confidence 46778887777777777777667777663
No 266
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=68.19 E-value=25 Score=23.92 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=44.0
Q ss_pred CHHHHHHHHhcCCCcc-EEEEeCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 58 NGKEAVDLFRTGAKFH-IVFIDMEMPV---MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~d-lil~d~~~~~---~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+..+..+.+... ..+ +.+.|....+ ..-++.++.+++. ..+|+++-..-.+.+....++..|++..+.
T Consensus 31 ~~~~~a~~~~~~-Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~-~~iPvi~~ggi~~~~~i~~~~~~Gad~v~l 102 (266)
T 2w6r_A 31 LLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADKALA 102 (266)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTSSCSSCCCHHHHHHHGGG-CCSCEEEESCCCSTHHHHHHHHHTCSEEEC
T ss_pred CHHHHHHHHHHC-CCCEEEEEecCcccCCCcccHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCcHhhh
Confidence 455555555442 355 4455654322 1226778888765 368888877767778888899999999754
No 267
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=68.04 E-value=34 Score=25.24 Aligned_cols=106 Identities=2% Similarity=-0.117 Sum_probs=59.5
Q ss_pred cEEEEEeCCH-HHHHHHHHHHHhcCCeEE-Ee-cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 27 YFALVVDDDP-MIRRIHSMILKSVGFKVE-VA-ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 27 ~~vlii~~~~-~~~~~l~~~l~~~g~~v~-~~-~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
.+++++++.+ .....++.+....+-.+. .. .+.++....+.. .|++++-.... .-|..+++.+.. .+|+|
T Consensus 322 ~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~---adv~v~pS~~E-~~g~~~lEAma~---G~PvI 394 (485)
T 2qzs_A 322 GQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG---ADVILVPSRFE-PCGLTQLYGLKY---GTLPL 394 (485)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH---CSEEEECCSCC-SSCSHHHHHHHH---TCEEE
T ss_pred cEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh---CCEEEECCccC-CCcHHHHHHHHC---CCCEE
Confidence 4566666543 345666666665553332 22 233333344433 57777654432 233444444433 56666
Q ss_pred EEecCCChHHHHHHHHhc---------ccEEeeCCCCHHHHHHHHHHHh
Q 045936 104 GVTSRNSETEREVFMQAG---------LDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g---------~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+. .. .-.......| ..+++..|-++++|..+|.+++
T Consensus 395 ~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 395 VR-RT---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp EE-SS---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred EC-CC---CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 43 22 2334445555 7889999999999999998876
No 268
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=67.94 E-value=7.9 Score=25.81 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=6.3
Q ss_pred HHHHhcccEEeeCC
Q 045936 116 VFMQAGLDLCYTKP 129 (145)
Q Consensus 116 ~~~~~g~~~~l~kP 129 (145)
.+.+.|++.+-..+
T Consensus 75 ~~~~~Gad~itvh~ 88 (216)
T 1q6o_A 75 MCFEANADWVTVIC 88 (216)
T ss_dssp HHHHTTCSEEEEET
T ss_pred HHHhCCCCEEEEec
Confidence 34445555444433
No 269
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=67.76 E-value=25 Score=23.69 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCC----CCCC-CHHHHHHHHHhhC--CCCcEEEEecCCCh
Q 045936 41 IHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDME----MPVM-DGIEATKAMRAMK--VESKIVGVTSRNSE 111 (145)
Q Consensus 41 ~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~----~~~~-~g~~~~~~l~~~~--~~~~ii~lt~~~~~ 111 (145)
.....|+..|+.+. -+.++...+..+.. -++|.|=+|-. +... ....+++.+.... .++. ++..+-.+.
T Consensus 147 ~~l~~L~~~G~~ialDdfG~g~s~l~~L~~-l~~d~iKiD~~~v~~~~~~~~~~~~l~~i~~~a~~l~~~-viaeGVEt~ 224 (250)
T 4f3h_A 147 QFLASVSAMGCKVGLEQFGSGLDSFQLLAH-FQPAFLKLDRSITGDIASARESQEKIREITSRAQPTGIL-TVAEFVADA 224 (250)
T ss_dssp HHHHHHHTTTCEEEEEEETSSTHHHHHHTT-SCCSEEEECHHHHTTTTTCSHHHHHHHHTHHHHHHHTCE-EEECCCCCH
T ss_pred HHHHHHHHCCCEEEEeCCCCCchHHHHHhh-CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCE-EEEeccCCH
Confidence 34456677898865 67777788888876 67999999832 2222 2344555444321 1233 446677788
Q ss_pred HHHHHHHHhcccEE----eeCCCC
Q 045936 112 TEREVFMQAGLDLC----YTKPLT 131 (145)
Q Consensus 112 ~~~~~~~~~g~~~~----l~kP~~ 131 (145)
+....+.+.|++.+ +.||.+
T Consensus 225 ~~~~~l~~~G~~~~QG~~~~~P~p 248 (250)
T 4f3h_A 225 QSMSSFFTAGVDYVQGDFVAPTGP 248 (250)
T ss_dssp HHHHHHHHHTCSEECSTTTCCCBS
T ss_pred HHHHHHHHcCCCEEeeccccCCCC
Confidence 88888889998653 566653
No 270
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=67.60 E-value=17 Score=25.08 Aligned_cols=80 Identities=15% Similarity=0.010 Sum_probs=46.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~i 102 (145)
.+..++|.+...-+-..+...|.+.|+.|..+. +.+.+-..... ....+..+..++.+.+.. .+++.+.+....+-+
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 106 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATK-IGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDK 106 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-HCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-cCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 345788888888888888888888899877444 44333332222 112333444444444433 456666555444455
Q ss_pred EEE
Q 045936 103 VGV 105 (145)
Q Consensus 103 i~l 105 (145)
++-
T Consensus 107 lvn 109 (277)
T 3gvc_A 107 LVA 109 (277)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 271
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=67.36 E-value=30 Score=24.42 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=45.0
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCC------CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCC
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMP------VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLT 131 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~------~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~ 131 (145)
+.++....+.. .|++++-.... ..-|..+++.+. ..+|+|.. .... .......| .+++..|-+
T Consensus 262 ~~~~~~~~~~~---ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a---~G~PvI~~-~~~~---~~e~i~~~-~g~~~~~~d 330 (394)
T 3okp_A 262 EYQDMINTLAA---ADIFAMPARTRGGGLDVEGLGIVYLEAQA---CGVPVIAG-TSGG---APETVTPA-TGLVVEGSD 330 (394)
T ss_dssp CHHHHHHHHHH---CSEEEECCCCBGGGTBCCSSCHHHHHHHH---TTCCEEEC-SSTT---GGGGCCTT-TEEECCTTC
T ss_pred CHHHHHHHHHh---CCEEEecCccccccccccccCcHHHHHHH---cCCCEEEe-CCCC---hHHHHhcC-CceEeCCCC
Confidence 33555555543 57777654431 233445555443 35677653 3222 22233556 889999999
Q ss_pred HHHHHHHHHHHhh
Q 045936 132 MAKIVPLLEELQK 144 (145)
Q Consensus 132 ~~~l~~~l~~~~~ 144 (145)
.+++..++.++++
T Consensus 331 ~~~l~~~i~~l~~ 343 (394)
T 3okp_A 331 VDKLSELLIELLD 343 (394)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 272
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=66.84 E-value=29 Score=24.00 Aligned_cols=40 Identities=8% Similarity=0.034 Sum_probs=29.5
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+.++.+++.. +.|+.+=.+-.+++....++..||+.++.
T Consensus 194 ~~~i~~lr~~~-~~pi~vggGI~t~e~~~~~~~agAD~vVV 233 (268)
T 1qop_A 194 HHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAIS 233 (268)
T ss_dssp HHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhcc-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 57888888754 57766544445588888889999999863
No 273
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=66.56 E-value=22 Score=22.60 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=51.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCC-eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHh---hCCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGF-KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRA---MKVE 99 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~-~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~---~~~~ 99 (145)
.+|.-+|-++...+..+..+...|. .+. ...|..+....... ..+|+|++|.-.... +-.++++.+.+ ..|+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pg 146 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT-SPVDLVLADPPYNVDSADVDAILAALGTNGWTREG 146 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS-SCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC-CCccEEEECCCCCcchhhHHHHHHHHHhcCccCCC
Confidence 3799999999999998888887774 333 56677666554433 579999998544332 23456666655 2455
Q ss_pred CcEEEEe
Q 045936 100 SKIVGVT 106 (145)
Q Consensus 100 ~~ii~lt 106 (145)
..+++-+
T Consensus 147 G~l~~~~ 153 (189)
T 3p9n_A 147 TVAVVER 153 (189)
T ss_dssp CEEEEEE
T ss_pred eEEEEEe
Confidence 5454443
No 274
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=66.43 E-value=26 Score=23.32 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=45.2
Q ss_pred CcEEEEEe------CCHHHHHHHHHHHHhcCCeEEEe----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 045936 26 PYFALVVD------DDPMIRRIHSMILKSVGFKVEVA----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA 95 (145)
Q Consensus 26 ~~~vlii~------~~~~~~~~l~~~l~~~g~~v~~~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~ 95 (145)
+.+|+++. +.......+...|+..|+.+... .+.++..+.+.. .|.|++ ++.+...+.+.|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~---ad~I~l----~GG~~~~l~~~L~~ 99 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK---NDFIYV----TGGNTFFLLQELKR 99 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH---SSEEEE----CCSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh---CCEEEE----CCCCHHHHHHHHHH
Confidence 45888886 33346677889999999998877 477777777764 588876 56766666666555
No 275
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=66.11 E-value=19 Score=25.41 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe------e-CCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY------T-KPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l------~-kP~~~~~l~~~l~~~ 142 (145)
++.++.+++..+++||+....-.+.+....++..||+... . .|.-..++..-++..
T Consensus 232 ~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~ 294 (314)
T 2e6f_A 232 LANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEI 294 (314)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHH
Confidence 5778888776568999998888899999999999998762 2 455455555544443
No 276
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=66.08 E-value=36 Score=24.82 Aligned_cols=90 Identities=8% Similarity=-0.028 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCC----C-CCCHHHHHHHHHhhCC-CCcEEEEecCCCh
Q 045936 40 RIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEM----P-VMDGIEATKAMRAMKV-ESKIVGVTSRNSE 111 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~----~-~~~g~~~~~~l~~~~~-~~~ii~lt~~~~~ 111 (145)
+.+..+-+..+..+. .+.+.+++...... ..|.|.+.-+- . ....++.+..+++.-+ .+|++...+-.+.
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~--Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~ 292 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH--GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 292 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT--TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSH
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc--CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCH
Confidence 344444455565543 46677887776665 38888774321 1 1246677788877543 7899988888899
Q ss_pred HHHHHHHHhcccEEe-eCCCC
Q 045936 112 TEREVFMQAGLDLCY-TKPLT 131 (145)
Q Consensus 112 ~~~~~~~~~g~~~~l-~kP~~ 131 (145)
.....++..||+.+. .+|+-
T Consensus 293 ~D~~k~l~~GAdaV~iGr~~l 313 (370)
T 1gox_A 293 TDVFKALALGAAGVFIGRPVV 313 (370)
T ss_dssp HHHHHHHHHTCSEEEECHHHH
T ss_pred HHHHHHHHcCCCEEeecHHHH
Confidence 999999999999974 44543
No 277
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=66.08 E-value=22 Score=22.50 Aligned_cols=106 Identities=10% Similarity=0.048 Sum_probs=65.3
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhcCCeEEE---ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 26 PYFALVVDDDP-MIRRIHSMILKSVGFKVEV---AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 26 ~~~vlii~~~~-~~~~~l~~~l~~~g~~v~~---~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
..+++++++.+ .....++..++..+ .+.. .-+.++....+. ..|++++-.... .-|..+++.+.. .+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~---~ad~~l~ps~~e-~~~~~~~Ea~a~---G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG---SVDFVIIPSYFE-PFGLVALEAMCL---GAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT---TCSEEEECCSCC-SSCHHHHHHHHT---TCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH---HCCEEEECCCCC-CccHHHHHHHHC---CCC
Confidence 45777777654 25567777777776 4433 334456655554 368888755443 234555555433 566
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+|+. .. . ...... .|-.+++..|-+.+++...|.++++
T Consensus 142 vI~~-~~--~-~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-AV--G-GLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-SC--H-HHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-CC--C-ChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 5543 21 2 233344 6778889999999999999988764
No 278
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=65.97 E-value=23 Score=22.62 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=44.1
Q ss_pred cEEEEEeCCHHHH--HHHHHHHHhcCCeEEE--e---cCHHHHHHH----HhcCCCccEEEEeCCCCCCC---------H
Q 045936 27 YFALVVDDDPMIR--RIHSMILKSVGFKVEV--A---ENGKEAVDL----FRTGAKFHIVFIDMEMPVMD---------G 86 (145)
Q Consensus 27 ~~vlii~~~~~~~--~~l~~~l~~~g~~v~~--~---~~~~~~l~~----l~~~~~~dlil~d~~~~~~~---------g 86 (145)
.+|++++|+-... ..+...|... ..+.. . ......++. +.. ..||+|++.+-..+.. -
T Consensus 21 prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~Vvi~~G~ND~~~~~~~~~~~l 98 (200)
T 4h08_A 21 PHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVLKN-TKFDVIHFNNGLHGFDYTEEEYDKSF 98 (200)
T ss_dssp CEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHHHH-SCCSEEEECCCSSCTTSCHHHHHHHH
T ss_pred CeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHHhc-CCCCeEEEEeeeCCCCCCHHHHHHHH
Confidence 3899999985432 2344444322 23321 1 122222332 233 4699999876554431 1
Q ss_pred HHHHHHHHhhCCCCcEEEEec
Q 045936 87 IEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~ 107 (145)
-.+++.+++..|..+|++++.
T Consensus 99 ~~ii~~l~~~~p~~~ii~~~~ 119 (200)
T 4h08_A 99 PKLIKIIRKYAPKAKLIWANT 119 (200)
T ss_dssp HHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHHHhhhCCCccEEEecc
Confidence 346777888888888887754
No 279
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=65.79 E-value=14 Score=24.07 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=48.6
Q ss_pred CCcEEEEEeCCHHH----------HHHHHHHHHhcCCeEEEe--------------------cCHHHHHHHHhc---CCC
Q 045936 25 RPYFALVVDDDPMI----------RRIHSMILKSVGFKVEVA--------------------ENGKEAVDLFRT---GAK 71 (145)
Q Consensus 25 ~~~~vlii~~~~~~----------~~~l~~~l~~~g~~v~~~--------------------~~~~~~l~~l~~---~~~ 71 (145)
++.+|++++|.-.. ...+...|...++.+... .+..+.+..+.. ...
T Consensus 4 ~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~~~~ 83 (215)
T 2vpt_A 4 KTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNTHN 83 (215)
T ss_dssp CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhhccC
Confidence 34678889887543 345666776656554322 122333333221 135
Q ss_pred ccEEEEeCCCCCC--------CH-HHHHHHHHhhCCCCcEEEEecCC
Q 045936 72 FHIVFIDMEMPVM--------DG-IEATKAMRAMKVESKIVGVTSRN 109 (145)
Q Consensus 72 ~dlil~d~~~~~~--------~g-~~~~~~l~~~~~~~~ii~lt~~~ 109 (145)
||+|++.+-..+. .. ..+++.+++..|..+|++++-..
T Consensus 84 pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~p~~~ii~~~~~p 130 (215)
T 2vpt_A 84 PDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVKPNVTLFVADYYP 130 (215)
T ss_dssp CSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCTTCEEEEECCCS
T ss_pred CCEEEEEccccccCCCCChhHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 8999986532211 12 24777888888888888776443
No 280
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=65.59 E-value=31 Score=24.42 Aligned_cols=67 Identities=6% Similarity=-0.049 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCccEEEEeCCC--CCCC---HHHHHHHHHhhCCCCcEEEEecCC------------C-----hHHHHH
Q 045936 59 GKEAVDLFRTGAKFHIVFIDMEM--PVMD---GIEATKAMRAMKVESKIVGVTSRN------------S-----ETEREV 116 (145)
Q Consensus 59 ~~~~l~~l~~~~~~dlil~d~~~--~~~~---g~~~~~~l~~~~~~~~ii~lt~~~------------~-----~~~~~~ 116 (145)
...+++.+.+....+++|+.... +-.+ -+..+..+++.++++||++-++.. . ......
T Consensus 150 i~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~A 229 (285)
T 3sz8_A 150 LKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARA 229 (285)
T ss_dssp THHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHH
Confidence 35577776654567899987433 1111 133455566666668888755544 2 445667
Q ss_pred HHHhcccEE
Q 045936 117 FMQAGLDLC 125 (145)
Q Consensus 117 ~~~~g~~~~ 125 (145)
+...||+++
T Consensus 230 AvA~GA~gl 238 (285)
T 3sz8_A 230 GIAVGIAGL 238 (285)
T ss_dssp HHHHCCSEE
T ss_pred HHHhCCCEE
Confidence 889999974
No 281
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=65.59 E-value=27 Score=23.34 Aligned_cols=107 Identities=10% Similarity=0.097 Sum_probs=63.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEE--------ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHH-HHHHHHhh
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEV--------AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE-ATKAMRAM 96 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~--------~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~-~~~~l~~~ 96 (145)
+.+||+.-.+. .+..+...|++.|+.+.. .....+..+.+.. ..+|+|++-. .++.+ +.+.+. .
T Consensus 110 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~-~~~d~v~ftS----~s~v~~~~~~~~-~ 182 (229)
T 3p9z_A 110 KKSVLYLRAKE-IVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKP-KEKSILIFTA----ISHAKAFLHYFE-F 182 (229)
T ss_dssp TCEEEEEEESS-CSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSC-CTTCEEEECS----HHHHHHHHHHSC-C
T ss_pred CCEEEEECCcc-chHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhc-CCCeEEEEEC----HHHHHHHHHHhC-c
Confidence 45787776653 467778888888865432 1233344555554 5689887632 22333 222221 1
Q ss_pred CCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 97 KVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
...++++.+ .+.....+.+.|..-++.+..+.+.|.+.+.++.
T Consensus 183 ~~~~~~~aI----G~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l~ 225 (229)
T 3p9z_A 183 LENYTAISI----GNTTALYLQEQGIPSYIAKKPSLEACLELALSLR 225 (229)
T ss_dssp CTTCEEEES----SHHHHHHHHHTTCCEEECSSSSHHHHHHHHHHTC
T ss_pred ccCCEEEEE----CHHHHHHHHHcCCCceeCCCCCHHHHHHHHHHHh
Confidence 123444433 4455666777788767777778999999887753
No 282
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=65.58 E-value=8.2 Score=26.48 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeC
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPV--MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~--~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~k 128 (145)
.++++.+.+ ...|+|.+.....- .+.+++++.+|+ ...|+++++...++- ..|+++++..
T Consensus 23 ~~~~~~l~~-~GaD~IelG~S~g~t~~~~~~~v~~ir~--~~~Pivl~~y~~n~i------~~gvDg~iip 84 (234)
T 2f6u_A 23 DEIIKAVAD-SGTDAVMISGTQNVTYEKARTLIEKVSQ--YGLPIVVEPSDPSNV------VYDVDYLFVP 84 (234)
T ss_dssp HHHHHHHHT-TTCSEEEECCCTTCCHHHHHHHHHHHTT--SCCCEEECCSSCCCC------CCCSSEEEEE
T ss_pred HHHHHHHHH-cCCCEEEECCCCCCCHHHHHHHHHHhcC--CCCCEEEecCCcchh------hcCCCEEEEc
Confidence 344555554 35899998874321 124567777766 578999887763322 7799998754
No 283
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=65.54 E-value=29 Score=23.51 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=50.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHHHHh-----cCCCccEEEEeCCCCCCCHHHHHHHHHhh-
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVDLFR-----TGAKFHIVFIDMEMPVMDGIEATKAMRAM- 96 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~~l~-----~~~~~dlil~d~~~~~~~g~~~~~~l~~~- 96 (145)
..+|..+|-++......+..+...|+ .+. ...+..+.+..+. . ..+|+|++|... .+-..+++.+...
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~-~~fD~V~~d~~~--~~~~~~l~~~~~~L 180 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH-GSYDFIFVDADK--DNYLNYHKRLIDLV 180 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGT-TCBSEEEECSCS--TTHHHHHHHHHHHB
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCC-CCEEEEEEcCch--HHHHHHHHHHHHhC
Confidence 35899999999999999988888775 343 5567777665542 2 469999999653 2344556665553
Q ss_pred CCCCcEE
Q 045936 97 KVESKIV 103 (145)
Q Consensus 97 ~~~~~ii 103 (145)
.|+..++
T Consensus 181 kpGG~lv 187 (247)
T 1sui_A 181 KVGGVIG 187 (247)
T ss_dssp CTTCCEE
T ss_pred CCCeEEE
Confidence 4544443
No 284
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=65.45 E-value=38 Score=24.94 Aligned_cols=106 Identities=9% Similarity=-0.041 Sum_probs=62.9
Q ss_pred cEEEEEeCCH-HHHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 27 YFALVVDDDP-MIRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 27 ~~vlii~~~~-~~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
.+++++++.+ .....++......+-.+. .-.+.++....+.. .|++++-.... .-|..+++.+.. .+|+|
T Consensus 321 ~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~---adv~v~pS~~E-~~~~~~lEAma~---G~PvI 393 (485)
T 1rzu_A 321 GRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG---CDAIIIPSRFE-PCGLTQLYALRY---GCIPV 393 (485)
T ss_dssp CEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH---CSEEEECCSCC-SSCSHHHHHHHH---TCEEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc---CCEEEECcccC-CCCHHHHHHHHC---CCCEE
Confidence 4677777764 356677777766553343 22233333455543 58777755432 224445554433 56666
Q ss_pred EEecCCChHHHHHHHHhc---------ccEEeeCCCCHHHHHHHHHHHh
Q 045936 104 GVTSRNSETEREVFMQAG---------LDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g---------~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
+. .. .-..+....| ..+++..|-+.++|...|.+++
T Consensus 394 ~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 394 VA-RT---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EE-SS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred Ee-CC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 53 22 2334445555 7889999999999999998876
No 285
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=65.28 E-value=16 Score=26.50 Aligned_cols=46 Identities=7% Similarity=0.013 Sum_probs=34.6
Q ss_pred CHHHHHHHHhc--CCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 58 NGKEAVDLFRT--GAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 58 ~~~~~l~~l~~--~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
+..++++.+.. ....|++++- |++.-+++++.++..+|..|+.++-
T Consensus 241 N~~EAlre~~~Di~EGAD~vMVK---Pal~YLDIi~~vk~~~p~~P~aaYq 288 (342)
T 1h7n_A 241 GRGLARRALERDMSEGADGIIVK---PSTFYLDIMRDASEICKDLPICAYH 288 (342)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE---SSGGGHHHHHHHHHHTTTSCEEEEE
T ss_pred CHHHHHHHHHhhHHhCCCeEEEe---cCccHHHHHHHHHHhccCCCeEEEE
Confidence 56677765432 1347999987 6667789999999999899998773
No 286
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=65.26 E-value=24 Score=24.49 Aligned_cols=58 Identities=12% Similarity=-0.042 Sum_probs=37.5
Q ss_pred hcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 67 RTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 67 ~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.. ..||++|+-.-.+..+|..-.+.+-+ ..+.|.|+++........ .+++..-.+|+.
T Consensus 61 ~~-~~pDfvI~isPN~a~PGP~~ARE~l~-~~~iP~IvI~D~p~~K~k-d~l~~~g~GYIi 118 (283)
T 1qv9_A 61 ED-FEPDFIVYGGPNPAAPGPSKAREMLA-DSEYPAVIIGDAPGLKVK-DEMEEQGLGYIL 118 (283)
T ss_dssp HH-HCCSEEEEECSCTTSHHHHHHHHHHH-TSSSCEEEEEEGGGGGGH-HHHHHTTCEEEE
T ss_pred hh-cCCCEEEEECCCCCCCCchHHHHHHH-hCCCCEEEEcCCcchhhH-HHHHhcCCcEEE
Confidence 44 36998888776677778766555543 236888888887666644 555555555543
No 287
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=65.11 E-value=40 Score=25.05 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=62.2
Q ss_pred EEEEEe----CCHHHHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCC-----------CCCCHHHHH
Q 045936 28 FALVVD----DDPMIRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEM-----------PVMDGIEAT 90 (145)
Q Consensus 28 ~vlii~----~~~~~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~-----------~~~~g~~~~ 90 (145)
.+++++ ......+.++.+-+..+..+. .+.+.+++....+. ..|.|.+...- .+...+..+
T Consensus 158 dvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a--GAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al 235 (400)
T 3ffs_A 158 DVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN--GADGIKVGIGPGSICTTRIVAGVGVPQITAI 235 (400)
T ss_dssp SEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT--TCSEEEECC---------CCSCBCCCHHHHH
T ss_pred CEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc--CCCEEEEeCCCCcCcccccccccchhHHHHH
Confidence 456654 222334444444344466554 67889998887765 38988873210 113456666
Q ss_pred HHHHhh--CCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 91 KAMRAM--KVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 91 ~~l~~~--~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..+... ...+|||.-..-.+...+..++..||+...
T Consensus 236 ~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 236 EKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp HHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 666553 246888887787888999999999999864
No 288
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=65.06 E-value=29 Score=23.39 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=45.4
Q ss_pred cCHHHHHHHHhcCCCcc-EEEEeCCCCCCCH---HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 57 ENGKEAVDLFRTGAKFH-IVFIDMEMPVMDG---IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 57 ~~~~~~l~~l~~~~~~d-lil~d~~~~~~~g---~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+..+..+.+... ..| +.+.|........ ++.++.+++. ...|+++...-.+.+....++..|++..+.
T Consensus 31 ~d~~~~a~~~~~~-Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~-~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 31 GDPVEAARAYDEA-GADELVFLDISATHEERAILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp TCHHHHHHHHHHH-TCSCEEEEECCSSTTCHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHc-CCCEEEEEcCCccccCccccHHHHHHHHHh-CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 3555555555542 355 4455655433332 3456666654 378999888888889999999999999754
No 289
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=64.92 E-value=21 Score=24.55 Aligned_cols=81 Identities=10% Similarity=0.048 Sum_probs=46.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEE-ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEV-AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~-~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~i 102 (145)
.+..++|.+...-+-..+...|.+.|+.|.. ..+.+.+-+.... ....+..+..++.+.+.. .+++.+.+.+..+-+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 105 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAE-IGDDALCVPTDVTDPDSVRALFTATVEKFGRVDV 105 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-hCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 3456788888888888898888888998774 4444443333222 112333444444444433 456666555444555
Q ss_pred EEEe
Q 045936 103 VGVT 106 (145)
Q Consensus 103 i~lt 106 (145)
++-.
T Consensus 106 lVnn 109 (272)
T 4dyv_A 106 LFNN 109 (272)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5443
No 290
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=64.77 E-value=32 Score=24.42 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
.+.++..++..+..+|++-+. ..+....+.+.|++.+...+.+++.+...++.
T Consensus 196 ~~ai~~~r~~~~~~kI~vev~--tlee~~eA~~aGaD~I~ld~~~~e~l~~~v~~ 248 (296)
T 1qap_A 196 RQAVEKAFWLHPDVPVEVEVE--NLDELDDALKAGADIIMLDNFNTDQMREAVKR 248 (296)
T ss_dssp HHHHHHHHHHSTTSCEEEEES--SHHHHHHHHHTTCSEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCcEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 456677777666545555443 33667778899999998999999999887763
No 291
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=64.74 E-value=34 Score=24.12 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=52.5
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhcCCeEE---Ee----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALVV-DDDPM---IRRIHSMILKSVGFKVE---VA----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii-~~~~~---~~~~l~~~l~~~g~~v~---~~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|.++ +++.. ....++..+++.|..+. .+ .+....+..+.. ..||+|++... ......+++.+++.
T Consensus 161 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~-~~~dav~~~~~--~~~a~~~~~~~~~~ 237 (386)
T 3sg0_A 161 KVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIA-TKPDAVFIASA--GTPAVLPQKALRER 237 (386)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHH-TCCSEEEEECC--SGGGHHHHHHHHHT
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHh-cCCCEEEEecC--cchHHHHHHHHHHc
Confidence 55444 45543 33455667777786653 22 355666777766 46999887542 34567888889888
Q ss_pred CCCCcEEEEecCCChHHHHH
Q 045936 97 KVESKIVGVTSRNSETEREV 116 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~ 116 (145)
+...|++......+......
T Consensus 238 g~~~~~~~~~~~~~~~~~~~ 257 (386)
T 3sg0_A 238 GFKGAIYQTHGVATEEFIKL 257 (386)
T ss_dssp TCCSEEECCGGGCSHHHHHH
T ss_pred CCCCcEEeccccCCHHHHHh
Confidence 77777665555555554443
No 292
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=64.72 E-value=15 Score=26.50 Aligned_cols=47 Identities=6% Similarity=0.092 Sum_probs=35.2
Q ss_pred cCHHHHHHHHhc--CCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 57 ENGKEAVDLFRT--GAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 57 ~~~~~~l~~l~~--~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
.+..++++.... ....|++++- |++.-+++++.++..+|..|+.++-
T Consensus 229 aN~~EAlre~~~Di~EGAD~vMVK---Pal~YLDIi~~vk~~~p~~P~aaYq 277 (330)
T 1pv8_A 229 GARGLALRAVDRDVREGADMLMVK---PGMPYLDIVREVKDKHPDLPLAVYH 277 (330)
T ss_dssp TCHHHHHHHHHHHHHTTCSBEEEE---SCGGGHHHHHHHHHHSTTSCEEEEE
T ss_pred CCHHHHHHHHHhhHHhCCceEEEe---cCccHHHHHHHHHHhcCCCCeEEEE
Confidence 356677765432 1347999987 6677789999999999999998773
No 293
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=64.68 E-value=30 Score=23.48 Aligned_cols=54 Identities=7% Similarity=0.080 Sum_probs=38.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-------CHHHHHHHHhcCCCccEEEEeCCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAE-------NGKEAVDLFRTGAKFHIVFIDMEM 81 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-------~~~~~l~~l~~~~~~dlil~d~~~ 81 (145)
++|+|.+....+...+...|...|+.|.... +.+...+.+.. ..+|+|+.-...
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~-~~~d~vi~~a~~ 66 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQE-IRPHIIIHCAAY 66 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHH-HCCSEEEECCCC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHh-cCCCEEEECCcc
Confidence 5899999999999999888888898887543 44444445543 258988865433
No 294
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=64.66 E-value=35 Score=24.22 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=52.6
Q ss_pred cccccccCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHh-cCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHH
Q 045936 11 SKKARISENPVSKNRPYFALVVDDDPMIRRIHSMILKS-VGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89 (145)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~vlii~~~~~~~~~l~~~l~~-~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~ 89 (145)
..+...++...+..++++|.|++--..-.......+.. .+++++.+.+... ..+.+-..+ +--++
T Consensus 10 ~~~~~~~~~~~~~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~--------~~~g~~~~~------~~~~l 75 (330)
T 4ew6_A 10 GVDLGTENLYFQSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG--------TVEGVNSYT------TIEAM 75 (330)
T ss_dssp ---------CCCCCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC--------CCTTSEEES------SHHHH
T ss_pred cccccchhhccccCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh--------hhcCCCccC------CHHHH
Confidence 33445555556666678999999876655333444444 3666653333210 112111111 11112
Q ss_pred HHHHHhhCCCCcEEEEecCC--ChHHHHHHHHhcccEEeeCCC--CHHHHHHHHH
Q 045936 90 TKAMRAMKVESKIVGVTSRN--SETEREVFMQAGLDLCYTKPL--TMAKIVPLLE 140 (145)
Q Consensus 90 ~~~l~~~~~~~~ii~lt~~~--~~~~~~~~~~~g~~~~l~kP~--~~~~l~~~l~ 140 (145)
+.. .+.+-+++++.+. -.+....++++|..-++-||+ +.++..+.++
T Consensus 76 ---l~~-~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~ 126 (330)
T 4ew6_A 76 ---LDA-EPSIDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEA 126 (330)
T ss_dssp ---HHH-CTTCCEEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHH
T ss_pred ---HhC-CCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHH
Confidence 222 1334445554432 233466678888888888886 4455544443
No 295
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=64.62 E-value=29 Score=23.23 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=50.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe--EE-EecCHHHHHHHHhc----CCCccEEEEeCCCCCCCHHHHHHHHHhh-CC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK--VE-VAENGKEAVDLFRT----GAKFHIVFIDMEMPVMDGIEATKAMRAM-KV 98 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~--v~-~~~~~~~~l~~l~~----~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~ 98 (145)
.+|..+|-++......+..+...|+. +. ...+..+.+..+.. ...+|+|++|... ..-..+++.+.+. .|
T Consensus 96 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~--~~~~~~l~~~~~~L~p 173 (237)
T 3c3y_A 96 GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADK--PNYIKYHERLMKLVKV 173 (237)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCG--GGHHHHHHHHHHHEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCch--HHHHHHHHHHHHhcCC
Confidence 58999999999999999998887762 43 56677776665521 1469999999642 2334455555543 33
Q ss_pred CCcEEEEe
Q 045936 99 ESKIVGVT 106 (145)
Q Consensus 99 ~~~ii~lt 106 (145)
+. ++++.
T Consensus 174 GG-~lv~d 180 (237)
T 3c3y_A 174 GG-IVAYD 180 (237)
T ss_dssp EE-EEEEE
T ss_pred Ce-EEEEe
Confidence 33 44453
No 296
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=64.61 E-value=21 Score=24.75 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=27.7
Q ss_pred HHHHHHhhCCCCcEEEEec------CCChHHHHHHHHhcccEEeeCCCCHHHHH
Q 045936 89 ATKAMRAMKVESKIVGVTS------RNSETEREVFMQAGLDLCYTKPLTMAKIV 136 (145)
Q Consensus 89 ~~~~l~~~~~~~~ii~lt~------~~~~~~~~~~~~~g~~~~l~kP~~~~~l~ 136 (145)
+++.+++.....|+++++= +.-......+.++|+++++..-+.+++..
T Consensus 78 ~~~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~ 131 (252)
T 3tha_A 78 VFELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESD 131 (252)
T ss_dssp HHHHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCH
T ss_pred HHHHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHH
Confidence 4444444333367766532 23344567778888888877666655533
No 297
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=64.51 E-value=19 Score=21.03 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=23.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHH
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDL 65 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~ 65 (145)
.+++.|.+....+.+.....+.||.+.++.+.++.-..
T Consensus 79 liiiydqdqnrleefsrevrrrgfevrtvtspddfkks 116 (134)
T 2l69_A 79 LIIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKKS 116 (134)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHH
T ss_pred EEEEEeCchhHHHHHHHHHHhcCceEEEecChHHHHHH
Confidence 45555666666666666666667777666666665433
No 298
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=64.51 E-value=29 Score=23.28 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=51.2
Q ss_pred CHHHHHHHHhcCCCccE-EEEeCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHh---cccEEe----
Q 045936 58 NGKEAVDLFRTGAKFHI-VFIDMEMPV---MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQA---GLDLCY---- 126 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dl-il~d~~~~~---~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~---g~~~~l---- 126 (145)
+..+....+.. ..++. ++.+..-.+ ...++.++.+++.. .+||++-.+-.+.+....+++. |++.++
T Consensus 147 ~~~e~~~~~~~-~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~-~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNK-EGCARYVVTDIAKDGTLQGPNLELLKNVCAAT-DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHH-TTCCCEEEEEC-------CCCHHHHHHHHHTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHh-CCCCEEEEeccCcccccCCCCHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 45565455544 34774 445543222 12467888887654 6888888777787888899988 999874
Q ss_pred --eCCCCHHHHHHHH
Q 045936 127 --TKPLTMAKIVPLL 139 (145)
Q Consensus 127 --~kP~~~~~l~~~l 139 (145)
..|++.+++...+
T Consensus 225 l~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 225 LYAKAFTLEEALEAT 239 (244)
T ss_dssp HHTTSSCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHh
Confidence 4577777666554
No 299
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=64.26 E-value=30 Score=24.91 Aligned_cols=104 Identities=13% Similarity=0.006 Sum_probs=54.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEE-Eec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVE-VAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
.+++|.|++-.......+...+...+++++ .++ +.+.+-..... ....-+.- +--++ +. .+.+-+
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~-~~~~~~~~-------~~~~l---l~--~~~vD~ 91 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV-YADARRIA-------TAEEI---LE--DENIGL 91 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH-SSSCCEES-------CHHHH---HT--CTTCCE
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH-cCCCcccC-------CHHHH---hc--CCCCCE
Confidence 357899999764443444555555678765 444 33333333332 11001111 11122 22 234455
Q ss_pred EEEecCC--ChHHHHHHHHhcccEEeeCCC--CHHHHHHHHHH
Q 045936 103 VGVTSRN--SETEREVFMQAGLDLCYTKPL--TMAKIVPLLEE 141 (145)
Q Consensus 103 i~lt~~~--~~~~~~~~~~~g~~~~l~kP~--~~~~l~~~l~~ 141 (145)
++++.+. -.+....++++|..-|+-||+ +.++..+.++.
T Consensus 92 V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 134 (361)
T 3u3x_A 92 IVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRV 134 (361)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHH
Confidence 5555443 344567789999999999997 44555555443
No 300
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=64.05 E-value=47 Score=25.46 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=49.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcC---------------------CCccEEEEeCCCCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTG---------------------AKFHIVFIDMEMPVM 84 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~---------------------~~~dlil~d~~~~~~ 84 (145)
+.+++|++.... ...+...|...|+.++......+.++.++.. ...+.+++ . ..+.
T Consensus 127 ~~hviI~G~g~~-g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t-~~D~ 203 (565)
T 4gx0_A 127 RGHILIFGIDPI-TRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-N-LSDP 203 (565)
T ss_dssp CSCEEEESCCHH-HHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-C-SCHH
T ss_pred CCeEEEECCChH-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-e-CCcH
Confidence 345666666543 3333444444555554444333333333221 23566666 2 2222
Q ss_pred CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 85 DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 85 ~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.....+..+++.. ..++++-+ .+++....+...|++..+.
T Consensus 204 ~n~~~~~~ar~~~-~~~iiar~--~~~~~~~~l~~~Gad~vi~ 243 (565)
T 4gx0_A 204 DNANLCLTVRSLC-QTPIIAVV--KEPVHGELLRLAGANQVVP 243 (565)
T ss_dssp HHHHHHHHHHTTC-CCCEEEEC--SSGGGHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHHHhc-CceEEEEE--CCHHHHHHHHHcCCCEEEC
Confidence 2334444566666 67765544 3445566677899987664
No 301
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=63.97 E-value=31 Score=23.46 Aligned_cols=80 Identities=16% Similarity=0.071 Sum_probs=45.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEE-ecCHHHHH---HHH-hcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEV-AENGKEAV---DLF-RTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKV 98 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~-~~~~~~~l---~~l-~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~ 98 (145)
.+..++|.+...-+-..+...|.+.|+.|.. ..+.+.+- ..+ .. ....+..+..++.+.+.+ .+++.+.+.+.
T Consensus 20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 98 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK-YGVETMAFRCDVSNYEEVKKLLEAVKEKFG 98 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3457899999989999999988888998774 44443322 222 11 112344444444444333 35555555443
Q ss_pred CCcEEEE
Q 045936 99 ESKIVGV 105 (145)
Q Consensus 99 ~~~ii~l 105 (145)
.+-+++-
T Consensus 99 ~iD~lvn 105 (267)
T 1vl8_A 99 KLDTVVN 105 (267)
T ss_dssp CCCEEEE
T ss_pred CCCEEEE
Confidence 4445544
No 302
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=63.88 E-value=26 Score=24.72 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=45.8
Q ss_pred EEE-EEeCCHH---HHHHHHHHHHhcCCeEE---Ee----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FAL-VVDDDPM---IRRIHSMILKSVGFKVE---VA----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vl-ii~~~~~---~~~~l~~~l~~~g~~v~---~~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|. |.+++.. ....++..++..|..+. .+ .+....+..+.. ..||+|++... +.....+++.+++.
T Consensus 143 ~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~--~~~a~~~~~~~~~~ 219 (364)
T 3lop_A 143 RIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLA-ADVQAIFLGAT--AEPAAQFVRQYRAR 219 (364)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHH-SCCSEEEEESC--HHHHHHHHHHHHHT
T ss_pred eEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHh-CCCCEEEEecC--cHHHHHHHHHHHHc
Confidence 444 4455543 23455667777775532 22 355667777766 46999888532 33466788888887
Q ss_pred CCCCcEEEEe
Q 045936 97 KVESKIVGVT 106 (145)
Q Consensus 97 ~~~~~ii~lt 106 (145)
....|++...
T Consensus 220 g~~~~~i~~~ 229 (364)
T 3lop_A 220 GGEAQLLGLS 229 (364)
T ss_dssp TCCCEEEECT
T ss_pred CCCCeEEEec
Confidence 7777755333
No 303
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=63.87 E-value=35 Score=23.88 Aligned_cols=85 Identities=9% Similarity=0.040 Sum_probs=50.0
Q ss_pred EEEEE-eCCHHH---HHHHHHHHHhcCCeEE---Ee----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALVV-DDDPMI---RRIHSMILKSVGFKVE---VA----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii-~~~~~~---~~~l~~~l~~~g~~v~---~~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|.++ +++... ...++..++..|..+. .+ .+....+..+.. ..+|+|++... +.....+++.+++.
T Consensus 140 ~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~--~~~a~~~~~~~~~~ 216 (356)
T 3ipc_A 140 KVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKE-AGVSIIYWGGL--HTEAGLIIRQAADQ 216 (356)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHH-TTCCEEEEESC--HHHHHHHHHHHHHH
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh-cCCCEEEEccC--chHHHHHHHHHHHC
Confidence 45444 444433 2445666777776532 22 355667777766 46898886532 33456788888887
Q ss_pred CCCCcEEEEecCCChHHHH
Q 045936 97 KVESKIVGVTSRNSETERE 115 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~ 115 (145)
....|++......++....
T Consensus 217 g~~~~~~~~~~~~~~~~~~ 235 (356)
T 3ipc_A 217 GLKAKLVSGDGIVSNELAS 235 (356)
T ss_dssp TCCCEEEECGGGCSHHHHH
T ss_pred CCCCcEEEeccccCHHHHH
Confidence 7777776544445554443
No 304
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=63.72 E-value=26 Score=22.36 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=37.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeC
Q 045936 24 NRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 24 ~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~ 79 (145)
..+.+|.+...... ...+...|..+..+.+..+++..+.. +..|+++.+.
T Consensus 110 L~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~-g~~D~~~~~~ 159 (228)
T 2pyy_A 110 LPGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQT-KKADAVVFDA 159 (228)
T ss_dssp CTTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHT-TSSSEEEEEH
T ss_pred cCCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHc-CCCCEEEecH
Confidence 34567877766542 34455678888889999999999998 5799999873
No 305
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=63.62 E-value=14 Score=24.49 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=26.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAE 57 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~ 57 (145)
.+++|+|.+....+...+...|.+.|+.|..+.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~ 52 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMV 52 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEE
Confidence 467899999998898888888888899877443
No 306
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=63.33 E-value=42 Score=24.68 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=38.3
Q ss_pred CccEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 71 KFHIVFIDMEMPVM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 71 ~~dlil~d~~~~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+|.+.++...... ...+.++.+++..++.||++ ......+....+.+.|++.+..
T Consensus 165 G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 165 HVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLISVGADCLKV 221 (404)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHTTTCSEEEE
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHhcCCCEEEE
Confidence 47888776433221 24677888888766677765 3344567788889999998765
No 307
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=63.17 E-value=19 Score=24.64 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=42.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCC
Q 045936 73 HIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKP 129 (145)
Q Consensus 73 dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP 129 (145)
.+|.++. .......++++.+++.....|+++=.+-.+++....+++ ||+..+.-.
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGS 219 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGN 219 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEECh
Confidence 7888887 444445789999988765678877777778888888888 999987654
No 308
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=62.72 E-value=22 Score=23.62 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=56.1
Q ss_pred EEEEEeC-CHHHHHHHHHHHHhcC--CeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC-CCCcEE
Q 045936 28 FALVVDD-DPMIRRIHSMILKSVG--FKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK-VESKIV 103 (145)
Q Consensus 28 ~vlii~~-~~~~~~~l~~~l~~~g--~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~-~~~~ii 103 (145)
.+++.++ ++...+.+..+.+.+| |.+....+....++.. .-.++-+.|-+.+--+++..|++.. ..-+++
T Consensus 32 ~iil~~~~D~~v~esv~dV~~rWGG~F~ve~~~~wk~~ik~w------gG~VVHLTMYG~~i~dvi~eIr~~~~~~~~iL 105 (201)
T 2yy8_A 32 GIIIASEEDEKVKESVEDVVKRWGGPFFIEFNRNWRKVMKEF------TGVKVHLTMYGLHVDDVIEELKEKLKKGEDFM 105 (201)
T ss_dssp EEEESSSCCHHHHHHHHHHHHHHCSCCBCCBCSCHHHHHHHC------CSEEEEEEEEEEEHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEcCCcChhHHHHHHHHHHhcCCceEEEECCCHHHHHHhc------CCEEEEEecCCCchHHHHHHHHhhcccCCCEE
Confidence 6888888 9999999999999987 7777666766665543 3356667777888788888998641 123444
Q ss_pred -EEecCCChHHH
Q 045936 104 -GVTSRNSETER 114 (145)
Q Consensus 104 -~lt~~~~~~~~ 114 (145)
++.+..-+...
T Consensus 106 VVVGaeKVP~ev 117 (201)
T 2yy8_A 106 IIVGAEKVPREV 117 (201)
T ss_dssp EEECSSCCCHHH
T ss_pred EEECCCcCCHHH
Confidence 44554444443
No 309
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=62.61 E-value=16 Score=26.57 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=33.4
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 87 IEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 87 ~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
++.++.+++..+ .+||+....-.+.+...+++..||+.+
T Consensus 262 ~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V 301 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMV 301 (345)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEE
Confidence 577888887654 799999999999999999999999986
No 310
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=62.55 E-value=7.9 Score=26.16 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=12.3
Q ss_pred HHHHHHhcCCCcc-EEEEeCCCCCC
Q 045936 61 EAVDLFRTGAKFH-IVFIDMEMPVM 84 (145)
Q Consensus 61 ~~l~~l~~~~~~d-lil~d~~~~~~ 84 (145)
+.++.+++ ..|+ -+++|+.+.+.
T Consensus 47 ~~v~~l~~-~~p~~~iflDlKl~Di 70 (221)
T 3exr_A 47 ELVEVLRS-LFPDKIIVADTKCADA 70 (221)
T ss_dssp HHHHHHHH-HCTTSEEEEEEEECSC
T ss_pred HHHHHHHH-hCCCCcEEEEEEeecc
Confidence 34555544 2123 56778877744
No 311
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=62.51 E-value=26 Score=21.98 Aligned_cols=105 Identities=10% Similarity=0.019 Sum_probs=58.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHH--hc----CCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCC
Q 045936 27 YFALVVDDDPMIRRIHSMILK--SV----GFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVES 100 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~--~~----g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~ 100 (145)
.+++++.+.+.. ..++..+. .. .+.....-+.++....+.. .|++++-... ..-|..+++.+. ..+
T Consensus 51 ~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~---adi~v~ps~~-e~~~~~~~Eama---~G~ 122 (177)
T 2f9f_A 51 EKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR---CKGLLCTAKD-EDFGLTPIEAMA---SGK 122 (177)
T ss_dssp SCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH---CSEEEECCSS-CCSCHHHHHHHH---TTC
T ss_pred cEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh---CCEEEeCCCc-CCCChHHHHHHH---cCC
Confidence 456666654432 23333333 22 2233344455556666553 5777763332 223455555543 356
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|+|+. .. .........|..+++. +.+.+++...|.++++
T Consensus 123 PvI~~-~~---~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~ 161 (177)
T 2f9f_A 123 PVIAV-NE---GGFKETVINEKTGYLV-NADVNEIIDAMKKVSK 161 (177)
T ss_dssp CEEEE-SS---HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHH
T ss_pred cEEEe-CC---CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHh
Confidence 66643 21 2344455567778888 9999999999988874
No 312
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=62.50 E-value=39 Score=23.97 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=58.8
Q ss_pred CCeEE-EecCHHHHHHHHhcCCCcc-EEEEeCC-CCC-CCHHHHHHHHHhhCCCCcEEEEecCCCh-------------H
Q 045936 50 GFKVE-VAENGKEAVDLFRTGAKFH-IVFIDME-MPV-MDGIEATKAMRAMKVESKIVGVTSRNSE-------------T 112 (145)
Q Consensus 50 g~~v~-~~~~~~~~l~~l~~~~~~d-lil~d~~-~~~-~~g~~~~~~l~~~~~~~~ii~lt~~~~~-------------~ 112 (145)
.+.+. ++.+.+++....+.+ .| +=|++-. .++ .+++.+++.+++.. .+|+.++..+... .
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gG--AdRIELc~~l~~GGlTPS~g~i~~a~~~~-~ipV~vMIRPRgGdF~Ys~~E~~~M~~ 115 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGG--ADRIELCSGLSEGGTTPSMGVLQVVKQSV-QIPVFVMIRPRGGDFLYSDREIEVMKA 115 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHT--CSEEEECBCGGGTCBCCCHHHHHHHHTTC-CSCEEEECCSSSSCSCCCHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhC--CCEEEECCCCCCCCCCCCHHHHHHHHHhc-CCCeEEEEecCCCCcccCHHHHHHHHH
Confidence 44444 688889998888763 45 4455532 233 45788888888754 5888888776655 5
Q ss_pred HHHHHHHhcccEEeeCC------CCHHHHHHHHH
Q 045936 113 EREVFMQAGLDLCYTKP------LTMAKIVPLLE 140 (145)
Q Consensus 113 ~~~~~~~~g~~~~l~kP------~~~~~l~~~l~ 140 (145)
.+..+.+.|+++++.-- ++.+.+...++
T Consensus 116 dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~ 149 (287)
T 3iwp_A 116 DIRLAKLYGADGLVFGALTEDGHIDKELCMSLMA 149 (287)
T ss_dssp HHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHH
Confidence 67788999999987553 34445555544
No 313
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=61.97 E-value=33 Score=23.06 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCCcc-EEEEeCCCCCC-C--HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe------eCC
Q 045936 60 KEAVDLFRTGAKFH-IVFIDMEMPVM-D--GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY------TKP 129 (145)
Q Consensus 60 ~~~l~~l~~~~~~d-lil~d~~~~~~-~--g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l------~kP 129 (145)
.+..+.+.. ..++ +++.+..-.+. . .+++++.+++.. ..|++...+-.+.+....++..|+++++ ..|
T Consensus 155 ~e~~~~~~~-~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVE-LGAGEILLTSMDRDGTKEGYDLRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHH-HTCCEEEEEETTTTTTCSCCCHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHH-cCCCEEEEecccCCCCcCCCCHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 444444433 2356 44454432221 2 378888888754 6888888887787888888889999875 346
Q ss_pred CCHHHHHHHHHH
Q 045936 130 LTMAKIVPLLEE 141 (145)
Q Consensus 130 ~~~~~l~~~l~~ 141 (145)
++++++.+.+++
T Consensus 233 ~~~~~~~~~l~~ 244 (252)
T 1ka9_F 233 IPIPKLKRYLAE 244 (252)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 788887776643
No 314
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=61.56 E-value=43 Score=24.17 Aligned_cols=85 Identities=8% Similarity=-0.018 Sum_probs=47.2
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhcCCeEEE---e----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALVV-DDDPM---IRRIHSMILKSVGFKVEV---A----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii-~~~~~---~~~~l~~~l~~~g~~v~~---~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|.++ +++.. ....++..++..|..++. + .+....+..++. ..+|+|++.... ..+...+++.+++.
T Consensus 166 ~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~~~-~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 166 KIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRA-DPPAVIVVTHFY-PQDQALFMNQFMTD 243 (419)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHH-SCCSEEEECCCC-HHHHHHHHHHHTTS
T ss_pred EEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHh-cCCCEEEEcccc-CchHHHHHHHHHHc
Confidence 55444 44432 334556666677877652 2 366677777776 469999885321 12356677777776
Q ss_pred CCCCcEEEEecCCChHHH
Q 045936 97 KVESKIVGVTSRNSETER 114 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~ 114 (145)
....+++......+++..
T Consensus 244 g~~~~~~~~~~~~~~~~~ 261 (419)
T 3h5l_A 244 PTNSLVYLQYGASLAAFR 261 (419)
T ss_dssp CCSCEEEECSGGGSHHHH
T ss_pred CCCceEEecCCCCcHHHH
Confidence 554444333333344333
No 315
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=61.52 E-value=38 Score=23.55 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=55.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCC---------CCCCCHHHHHHHHHhh
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDME---------MPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~---------~~~~~g~~~~~~l~~~ 96 (145)
+++++++.+ ....++.+.+..|-.+. ..-+.++....+.. .|++++-.. ....-|..+++.+..
T Consensus 190 ~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~---adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~- 264 (342)
T 2iuy_A 190 RLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS---AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVS- 264 (342)
T ss_dssp CEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH---CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHT-
T ss_pred EEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh---CCEEEECCcccccccccccccCccHHHHHHHhc-
Confidence 455665543 22333333333332222 22344444555443 577776544 122334555555433
Q ss_pred CCCCcEEEEecCCChHHHHHHHHh--cccEEeeCCCCHHHHHHHHHHHh
Q 045936 97 KVESKIVGVTSRNSETEREVFMQA--GLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~~~~~~~~--g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+|+|.. ... ........ |..+++..| +.+++...|.+++
T Consensus 265 --G~PvI~s-~~~---~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 265 --GTPVVGT-GNG---CLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP 306 (342)
T ss_dssp --TCCEEEC-CTT---THHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC
T ss_pred --CCCEEEc-CCC---ChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH
Confidence 5666543 322 24455566 778889999 9999999987654
No 316
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=61.03 E-value=35 Score=23.28 Aligned_cols=79 Identities=14% Similarity=0.067 Sum_probs=44.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEE-ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEV-AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~-~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~i 102 (145)
.+..++|.+...-+-..+...|.+.|+.|.. ..+.+.+-+.... ....+.++..++.+.+.. .+++.+ +.....-+
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~-~~~~~id~ 106 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADE-LGNRAEFVSTNVTSEDSVLAAIEAA-NQLGRLRY 106 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HCTTEEEEECCTTCHHHHHHHHHHH-TTSSEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-hCCceEEEEcCCCCHHHHHHHHHHH-HHhCCCCe
Confidence 3457899999988999998888888998774 4444443332222 112344444444444433 355555 33333334
Q ss_pred EEE
Q 045936 103 VGV 105 (145)
Q Consensus 103 i~l 105 (145)
++.
T Consensus 107 lv~ 109 (281)
T 3ppi_A 107 AVV 109 (281)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 317
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=60.61 E-value=43 Score=23.94 Aligned_cols=106 Identities=11% Similarity=0.079 Sum_probs=65.4
Q ss_pred CcEEEEEeCCHH-HHHHHHHHHHhcCCeEEE-ec--CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 26 PYFALVVDDDPM-IRRIHSMILKSVGFKVEV-AE--NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 26 ~~~vlii~~~~~-~~~~l~~~l~~~g~~v~~-~~--~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
..+++++++.+. ....++...+..| .+.. .. +.++....+. ..|++++-....+ -|..+++.+.. ++|
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~---~adv~v~ps~~e~-~~~~~~EAma~---G~P 356 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG---SVDFVIIPSYFEP-FGLVALEAMCL---GAI 356 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT---TCSEEEECBSCCS-SCHHHHHHHHT---TCE
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHH---HCCEEEeCCCCCC-ccHHHHHHHHC---CCC
Confidence 456777776543 3366777777777 4443 33 4555555554 3688887655433 34455555433 566
Q ss_pred EEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 102 IVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 102 ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+|.. ... ........| .+++..|.+.+++...|.++++
T Consensus 357 vi~s-~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 357 PIAS-AVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEE-SST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred eEEc-CCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 6543 222 233444456 8899999999999999988764
No 318
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=60.32 E-value=36 Score=22.86 Aligned_cols=80 Identities=11% Similarity=0.002 Sum_probs=46.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEE-ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEV-AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~-~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii 103 (145)
+..++|.....-+-..+...|.+.|+.|.. ..+.+.+-+.... ....+..+..++.+.+.. ++++.+.+....+-++
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l 87 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGE-IGDAALAVAADISKEADVDAAVEAALSKFGKVDIL 87 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-hCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 447899998888888888888888988774 4444443333222 122344444444444433 4566665554445555
Q ss_pred EEe
Q 045936 104 GVT 106 (145)
Q Consensus 104 ~lt 106 (145)
+-.
T Consensus 88 i~~ 90 (261)
T 3n74_A 88 VNN 90 (261)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
No 319
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=60.11 E-value=37 Score=23.01 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=46.1
Q ss_pred cCHHHHHHHHhcCCCccEE---EEeCCC-CCC-CHHHHHHHHHhhCCCCcE--EEEecCCChHHHHHHHHhcccEEeeCC
Q 045936 57 ENGKEAVDLFRTGAKFHIV---FIDMEM-PVM-DGIEATKAMRAMKVESKI--VGVTSRNSETEREVFMQAGLDLCYTKP 129 (145)
Q Consensus 57 ~~~~~~l~~l~~~~~~dli---l~d~~~-~~~-~g~~~~~~l~~~~~~~~i--i~lt~~~~~~~~~~~~~~g~~~~l~kP 129 (145)
.+.++.++.++. ..|.+ ++|-+. |.. -|..+++.||+.. +.++ -+.+.. .......+.++||+.+....
T Consensus 13 ~~l~~~i~~~~~--gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~-~~~~dvhLmv~d-p~~~i~~~~~aGAd~itvh~ 88 (231)
T 3ctl_A 13 LKFKEQIEFIDS--HADYFHIDIMDGHFVPNLTLSPFFVSQVKKLA-TKPLDCHLMVTR-PQDYIAQLARAGADFITLHP 88 (231)
T ss_dssp GGHHHHHHHHHT--TCSCEEEEEECSSSSSCCCBCHHHHHHHHTTC-CSCEEEEEESSC-GGGTHHHHHHHTCSEEEECG
T ss_pred hhHHHHHHHHHc--CCCEEEEEEEeCccCccchhcHHHHHHHHhcc-CCcEEEEEEecC-HHHHHHHHHHcCCCEEEECc
Confidence 456666777733 24433 345332 322 3889999999864 3443 233432 33357889999999887665
Q ss_pred CC-HHHHHHHHHH
Q 045936 130 LT-MAKIVPLLEE 141 (145)
Q Consensus 130 ~~-~~~l~~~l~~ 141 (145)
.. ...+.+.++.
T Consensus 89 Ea~~~~~~~~i~~ 101 (231)
T 3ctl_A 89 ETINGQAFRLIDE 101 (231)
T ss_dssp GGCTTTHHHHHHH
T ss_pred ccCCccHHHHHHH
Confidence 44 2234444443
No 320
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=60.08 E-value=26 Score=24.51 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=38.5
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe------eCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY------TKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l------~kP~~~~~l~~~l~~~ 142 (145)
+++++.+++.. .+||+....-.+.+....++..||+... ..|....++..-++..
T Consensus 230 ~~~i~~i~~~~-~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~ 290 (311)
T 1ep3_A 230 LKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPEL 290 (311)
T ss_dssp HHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHH
Confidence 46777777654 6888877777788899999999998862 3455555555555443
No 321
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=59.48 E-value=38 Score=22.86 Aligned_cols=67 Identities=10% Similarity=-0.003 Sum_probs=45.8
Q ss_pred CHHHHHHHHhcCCCcc-EEEEeCCCC---CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 58 NGKEAVDLFRTGAKFH-IVFIDMEMP---VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~d-lil~d~~~~---~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+..+..+.+.. ...+ +.+.|.+-. ...-+++++.+++.. .+|+++-..-.+.+....++..|++..+
T Consensus 36 ~~~~~a~~~~~-~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ 106 (247)
T 3tdn_A 36 LLRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLRGADKVS 106 (247)
T ss_dssp EHHHHHHHHHH-TTCSEEEEEETTTTTCSSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEC
T ss_pred CHHHHHHHHHH-cCCCEEEEEecCcccCCCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCeee
Confidence 45555555555 3466 445565432 122367888887764 6899888888888889999999998875
No 322
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=59.40 E-value=41 Score=23.25 Aligned_cols=99 Identities=7% Similarity=0.068 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeC-CCCCC-CHHHHHHHHHhhCC-CCcEEEEecCCChH
Q 045936 37 MIRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDM-EMPVM-DGIEATKAMRAMKV-ESKIVGVTSRNSET 112 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~-~~~~~-~g~~~~~~l~~~~~-~~~ii~lt~~~~~~ 112 (145)
.....+....++.|.. ++.+++.+|+...+.. ..+|+|-++. ++.+. ..++....+...-| +.++|.=++-..++
T Consensus 137 ~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l-~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~e 215 (251)
T 1i4n_A 137 EQIKEIYEAAEELGMDSLVEVHSREDLEKVFSV-IRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPR 215 (251)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTT-CCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGG
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc-CCCCEEEEeCcccccCCCCHHHHHHHHHhCCCCCEEEEeCCCCCHH
Confidence 3445555556678877 4589999998777654 1478886654 22211 12444455554433 45555556666788
Q ss_pred HHHHHHHhcccEEe-----eCCCCHHHHHH
Q 045936 113 EREVFMQAGLDLCY-----TKPLTMAKIVP 137 (145)
Q Consensus 113 ~~~~~~~~g~~~~l-----~kP~~~~~l~~ 137 (145)
....+... ++.++ .|+-++.....
T Consensus 216 dv~~~~~~-a~avLVG~aimr~~d~~~~~~ 244 (251)
T 1i4n_A 216 ELKDLRGK-VNAVLVGTSIMKAENPRRFLE 244 (251)
T ss_dssp GHHHHTTT-CSEEEECHHHHHCSSHHHHHH
T ss_pred HHHHHHHh-CCEEEEcHHHcCCcCHHHHHH
Confidence 89999999 99986 44544444333
No 323
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=59.39 E-value=38 Score=22.83 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCeEE-Ee--cCHHHHHHHHhcCCCccEEEEeCCCCCC-------CHHHHHHHHHhhC----CCCcEEEEe
Q 045936 41 IHSMILKSVGFKVE-VA--ENGKEAVDLFRTGAKFHIVFIDMEMPVM-------DGIEATKAMRAMK----VESKIVGVT 106 (145)
Q Consensus 41 ~l~~~l~~~g~~v~-~~--~~~~~~l~~l~~~~~~dlil~d~~~~~~-------~g~~~~~~l~~~~----~~~~ii~lt 106 (145)
.....++..|..+. .+ ++..+.++.+.. ..|.|++-.-.|+. .+++.++.+++.. .+.||.+..
T Consensus 103 ~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~--~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~G 180 (230)
T 1tqj_A 103 RTLCQIRELGKKAGAVLNPSTPLDFLEYVLP--VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDG 180 (230)
T ss_dssp HHHHHHHHTTCEEEEEECTTCCGGGGTTTGG--GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHHHHHcCCcEEEEEeCCCcHHHHHHHHh--cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEEC
Confidence 33344445565433 33 344444444433 36766655555542 2466677776643 256666544
Q ss_pred cCCChHHHHHHHHhcccEEe
Q 045936 107 SRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~l 126 (145)
+ -+.+....+.++|++.++
T Consensus 181 G-I~~~~~~~~~~aGad~vv 199 (230)
T 1tqj_A 181 G-LKPNNTWQVLEAGANAIV 199 (230)
T ss_dssp S-CCTTTTHHHHHHTCCEEE
T ss_pred C-cCHHHHHHHHHcCCCEEE
Confidence 4 445777788899999985
No 324
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=59.35 E-value=5.6 Score=26.98 Aligned_cols=51 Identities=10% Similarity=-0.026 Sum_probs=29.7
Q ss_pred EecCHHHHHHHHhcC---CCccEEEEeCCC-CCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 55 VAENGKEAVDLFRTG---AKFHIVFIDMEM-PVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~---~~~dlil~d~~~-~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
...+..+.+..+... ..+|+|++|--. -..+-++++..+... ..+++++..
T Consensus 70 ~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 70 EVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp EESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHT--TCEEEEECC
T ss_pred ccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhC--CCeEEEEec
Confidence 345566676666541 258999999432 222345566665543 567766544
No 325
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=59.32 E-value=34 Score=22.34 Aligned_cols=77 Identities=10% Similarity=0.135 Sum_probs=49.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHHHHhcC---CCccEEEEeCCCCCCCHHHHHHHHHhh-CC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVDLFRTG---AKFHIVFIDMEMPVMDGIEATKAMRAM-KV 98 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~~l~~~---~~~dlil~d~~~~~~~g~~~~~~l~~~-~~ 98 (145)
..+|..+|-++......+..+...|. .+. ...+..+.+..+... ..+|+|++|.. ...-..+++.+.+. .|
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~~L~p 171 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERCLQLLRP 171 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHHHHHEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHHHHHcCC
Confidence 35899999999999988888887764 343 456776665554321 36999999864 23334555555443 33
Q ss_pred CCcEEEE
Q 045936 99 ESKIVGV 105 (145)
Q Consensus 99 ~~~ii~l 105 (145)
+. ++++
T Consensus 172 gG-~lv~ 177 (229)
T 2avd_A 172 GG-ILAV 177 (229)
T ss_dssp EE-EEEE
T ss_pred Ce-EEEE
Confidence 33 4444
No 326
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=59.26 E-value=36 Score=22.53 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=39.8
Q ss_pred CccEEE---EeCCCCCCCH-HHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEEe-----eCCCCHHHHHHHHH
Q 045936 71 KFHIVF---IDMEMPVMDG-IEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLCY-----TKPLTMAKIVPLLE 140 (145)
Q Consensus 71 ~~dlil---~d~~~~~~~g-~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~l~ 140 (145)
..++++ ....-++.+| .+-++.+++..+ ..|++ ++..-.++....+.++|++.++ .+.-++.+....++
T Consensus 130 ~~~~vl~~a~~~~~~G~~g~~~~i~~lr~~~~~~~~i~-v~GGI~~~~~~~~~~aGad~ivvG~~I~~a~dp~~~~~~~~ 208 (216)
T 1q6o_A 130 IGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVT-VTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFK 208 (216)
T ss_dssp CCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEE-EESSCCGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCcEE-EECCcChhhHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHH
Confidence 345665 2222255555 666777776543 44444 5555556667788899999874 33334545444444
Q ss_pred H
Q 045936 141 E 141 (145)
Q Consensus 141 ~ 141 (145)
+
T Consensus 209 ~ 209 (216)
T 1q6o_A 209 R 209 (216)
T ss_dssp H
T ss_pred H
Confidence 4
No 327
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=59.20 E-value=30 Score=21.58 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=43.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe--EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHH
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK--VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMR 94 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~--v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~ 94 (145)
.+|..+|-++...+..+..+...|.. +. ...+..+.+.... ..+|+|+++.-.......++++.+.
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~fD~i~~~~~~~~~~~~~~~~~l~ 123 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT--GRFDLVFLDPPYAKETIVATIEALA 123 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC--SCEEEEEECCSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc--CCCCEEEECCCCCcchHHHHHHHHH
Confidence 47999999999999988888877753 43 4556666544332 3599999984321122234556664
No 328
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=59.14 E-value=27 Score=21.02 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=12.7
Q ss_pred HHHHHHHhcCCCccEEEEeCC
Q 045936 60 KEAVDLFRTGAKFHIVFIDME 80 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~ 80 (145)
....+.+.. ..++++++|.+
T Consensus 19 ~~la~~L~~-~g~~V~~id~~ 38 (141)
T 3llv_A 19 VGLVRELTA-AGKKVLAVDKS 38 (141)
T ss_dssp HHHHHHHHH-TTCCEEEEESC
T ss_pred HHHHHHHHH-CCCeEEEEECC
Confidence 344455555 35799999864
No 329
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=59.01 E-value=38 Score=22.82 Aligned_cols=81 Identities=10% Similarity=0.035 Sum_probs=47.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIV 103 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii 103 (145)
.+..++|.+...-+-..+...|.+.|+.|..+....+.++.+.......+..+..++.+.+.. .+++.+.+....+-++
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 86 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLL 86 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 345789999998899999998888899877444333333333221123455554445554443 3556665554444455
Q ss_pred EE
Q 045936 104 GV 105 (145)
Q Consensus 104 ~l 105 (145)
+-
T Consensus 87 v~ 88 (255)
T 4eso_A 87 HI 88 (255)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 330
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=58.48 E-value=35 Score=22.21 Aligned_cols=78 Identities=9% Similarity=0.142 Sum_probs=50.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe--EE-EecCHHHHHHHHhcC---CCccEEEEeCCCCCCCHHHHHHHHHhh-CC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK--VE-VAENGKEAVDLFRTG---AKFHIVFIDMEMPVMDGIEATKAMRAM-KV 98 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~--v~-~~~~~~~~l~~l~~~---~~~dlil~d~~~~~~~g~~~~~~l~~~-~~ 98 (145)
..+|..+|-++......+..+...|.. +. ...+..+.+..+... ..+|+|++|.. ...-..+++.+.+. .|
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~--~~~~~~~l~~~~~~L~p 166 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD--KANTDLYYEESLKLLRE 166 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC--GGGHHHHHHHHHHHEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC--HHHHHHHHHHHHHhcCC
Confidence 458999999999999999988877743 43 556777766655421 36999998864 22234455555443 34
Q ss_pred CCcEEEEe
Q 045936 99 ESKIVGVT 106 (145)
Q Consensus 99 ~~~ii~lt 106 (145)
+. ++++.
T Consensus 167 gG-~lv~~ 173 (225)
T 3tr6_A 167 GG-LIAVD 173 (225)
T ss_dssp EE-EEEEE
T ss_pred Cc-EEEEe
Confidence 33 44443
No 331
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=58.44 E-value=10 Score=26.15 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred cCHHHHHHHHhcCCCccEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHH
Q 045936 57 ENGKEAVDLFRTGAKFHIVFIDMEMPVM--DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAK 134 (145)
Q Consensus 57 ~~~~~~l~~l~~~~~~dlil~d~~~~~~--~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 134 (145)
....++++.+.+ ...|+|.+.....-. +.+++++.+|+ ...|+++++...++- ..|++.|+..-+..++
T Consensus 20 ~~t~~~~~~l~~-~GaD~ielG~S~Gvt~~~~~~~v~~ir~--~~~Pivlm~y~~n~i------~~G~dg~iiPdLp~ee 90 (240)
T 1viz_A 20 DLPDEQLEILCE-SGTDAVIIGGSDGVTEDNVLRMMSKVRR--FLVPCVLEVSAIEAI------VPGFDLYFIPSVLNSK 90 (240)
T ss_dssp CCCHHHHHHHHT-SCCSEEEECC----CHHHHHHHHHHHTT--SSSCEEEECSCGGGC------CSCCSEEEEEEETTBS
T ss_pred cccHHHHHHHHH-cCCCEEEECCCCCCCHHHHHHHHHHhhC--cCCCEEEecCccccc------cCCCCEEEEcccCccc
No 332
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=58.24 E-value=26 Score=23.29 Aligned_cols=85 Identities=8% Similarity=-0.011 Sum_probs=47.4
Q ss_pred EEEEEeCC--HHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhhCCCCcEE
Q 045936 28 FALVVDDD--PMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAMKVESKIV 103 (145)
Q Consensus 28 ~vlii~~~--~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~~~~~~ii 103 (145)
+|.+++.- ......+...|...|+.+....+.+.....+..-.+=|++|+ ....+.. ..+.++.+++...++++|
T Consensus 61 ~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~-iS~SG~t~~~i~~~~~ak~~~~Ga~vI 139 (220)
T 3etn_A 61 KLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLL-ISNSGKTREIVELTQLAHNLNPGLKFI 139 (220)
T ss_dssp CEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEE-ECSSSCCHHHHHHHHHHHHHCTTCEEE
T ss_pred EEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEE-EcCCCCCHHHHHHHHHHHhcCCCCeEE
Confidence 56666643 334455677777889888766655432221121123355544 3333333 455666666522478999
Q ss_pred EEecCCChHH
Q 045936 104 GVTSRNSETE 113 (145)
Q Consensus 104 ~lt~~~~~~~ 113 (145)
.+|+..+...
T Consensus 140 ~IT~~~~s~L 149 (220)
T 3etn_A 140 VITGNPDSPL 149 (220)
T ss_dssp EEESCTTSHH
T ss_pred EEECCCCChh
Confidence 9998766543
No 333
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=58.19 E-value=41 Score=22.95 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-CHHH---HHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-NGKE---AVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVE 99 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~~~~---~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~ 99 (145)
.+..++|.+...-+-..+...|.+.|+.|..+. +.+. ..+.+.. ....+..+..++.+.+.. ++++.+.+.+..
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 103 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRN-VGHDAEAVAFDVTSESEIIEAFARLDEQGID 103 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH-TTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 455788888888888899988888899877544 3332 2333333 234555555555554443 466666666555
Q ss_pred CcEEEEe
Q 045936 100 SKIVGVT 106 (145)
Q Consensus 100 ~~ii~lt 106 (145)
+-+++-.
T Consensus 104 iD~lv~n 110 (271)
T 4ibo_A 104 VDILVNN 110 (271)
T ss_dssp CCEEEEC
T ss_pred CCEEEEC
Confidence 5555543
No 334
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=58.08 E-value=43 Score=23.13 Aligned_cols=109 Identities=11% Similarity=0.034 Sum_probs=59.9
Q ss_pred CCcEEEEEeCCHHHH---HHHHHHHHhcCCeEEE-------ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHH-HHH
Q 045936 25 RPYFALVVDDDPMIR---RIHSMILKSVGFKVEV-------AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEAT-KAM 93 (145)
Q Consensus 25 ~~~~vlii~~~~~~~---~~l~~~l~~~g~~v~~-------~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~-~~l 93 (145)
.+++|+|........ ..+...|+..|+.+.. ..+.......+..-..+|.+++- ..+|.+.+ +.+
T Consensus 20 ~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifT----S~naV~~~~~~l 95 (286)
T 1jr2_A 20 RHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFT----SPRAVEAAELCL 95 (286)
T ss_dssp --CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEEC----CHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEe----CHHHHHHHHHHH
Confidence 456899887752233 6677788888876432 22444444444322358877653 23455433 333
Q ss_pred HhhC-------------CCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHH
Q 045936 94 RAMK-------------VESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 94 ~~~~-------------~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~ 141 (145)
.... +..++..+. +.....+...|...+.....+.+.|...+..
T Consensus 96 ~~~~~~~~~~~d~~~~l~~~~i~aVG----~~Ta~aL~~~G~~~~~p~~~~ae~L~~~l~~ 152 (286)
T 1jr2_A 96 EQNNKTEVWERSLKEKWNAKSVYVVG----NATASLVSKIGLDTEGETCGNAEKLAEYICS 152 (286)
T ss_dssp HHTTCHHHHHHHTHHHHHHSEEEECS----HHHHHHHHHTTCCCSCCSCSSHHHHHHHHHT
T ss_pred HhccccccchhhHHHHhccCcEEEEC----HHHHHHHHHcCCCcCCCCccCHHHHHHHHHh
Confidence 3211 234555543 2334445677876666667788888887753
No 335
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=58.02 E-value=52 Score=24.06 Aligned_cols=97 Identities=9% Similarity=0.027 Sum_probs=62.6
Q ss_pred EEEEEe----CCHHHHHHHHHHHHhc-CCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCC-----------CCCHHHH
Q 045936 28 FALVVD----DDPMIRRIHSMILKSV-GFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMP-----------VMDGIEA 89 (145)
Q Consensus 28 ~vlii~----~~~~~~~~l~~~l~~~-g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~-----------~~~g~~~ 89 (145)
.++.++ ..+...+.++.+-+.. +..+. .+.+.+++....+. ..|.|.+...-. +...+..
T Consensus 122 d~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a--GAD~I~vG~gpGs~~~tr~~~g~g~p~~~~ 199 (366)
T 4fo4_A 122 DVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA--GVSAVKVGIGPGSICTTRIVTGVGVPQITA 199 (366)
T ss_dssp SEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH--TCSEEEECSSCSTTBCHHHHHCCCCCHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc--CCCEEEEecCCCCCCCcccccCcccchHHH
Confidence 456664 2333444444444444 55543 57899999888776 389888842111 1244556
Q ss_pred HHHHHhh--CCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 90 TKAMRAM--KVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 90 ~~~l~~~--~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+..+.+. ..++|||.-..-.+...+..++..||+...
T Consensus 200 l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~ 238 (366)
T 4fo4_A 200 IADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVM 238 (366)
T ss_dssp HHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 6666542 346888887787788899999999999874
No 336
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=57.97 E-value=31 Score=25.55 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCccEEEEeC--CCCCC---CHHHHHHHHHhhCCCCcEEEEecCC-C-hHHHHHHHHhccc
Q 045936 59 GKEAVDLFRTGAKFHIVFIDM--EMPVM---DGIEATKAMRAMKVESKIVGVTSRN-S-ETEREVFMQAGLD 123 (145)
Q Consensus 59 ~~~~l~~l~~~~~~dlil~d~--~~~~~---~g~~~~~~l~~~~~~~~ii~lt~~~-~-~~~~~~~~~~g~~ 123 (145)
...+++.+......+++|+-. ..|.. --+..+..|++.++++||. +++.. . ......|...||+
T Consensus 173 i~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG-~SdHt~G~~~~~~AAvAlGA~ 243 (385)
T 1vli_A 173 VHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIG-FSDHSEHPTEAPCAAVRLGAK 243 (385)
T ss_dssp HHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEE-EEECCSSSSHHHHHHHHTTCS
T ss_pred HHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEE-eCCCCCCchHHHHHHHHcCCC
Confidence 334666666544568998643 23321 1344577788877788885 45544 5 5667778889998
No 337
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=57.89 E-value=41 Score=22.83 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCccEEEE-eCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe------eC
Q 045936 59 GKEAVDLFRTGAKFHIVFI-DMEMPV---MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY------TK 128 (145)
Q Consensus 59 ~~~~l~~l~~~~~~dlil~-d~~~~~---~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l------~k 128 (145)
..+..+.+.. ..++.|++ +..-.+ ...+++++.+++.. ..|+++..+-.+.+....++..|+++++ ..
T Consensus 158 ~~e~~~~~~~-~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~-~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~ 235 (266)
T 2w6r_A 158 LRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 235 (266)
T ss_dssp HHHHHHHHHH-TTCSEEEEEETTTTTTCSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC--
T ss_pred HHHHHHHHHH-cCCCEEEEEeecCCCCcCCCCHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcC
Confidence 4555454444 34665554 333221 12377888887753 6899888888888888888889999874 33
Q ss_pred CCCHHHHHHHH
Q 045936 129 PLTMAKIVPLL 139 (145)
Q Consensus 129 P~~~~~l~~~l 139 (145)
|...+++.+.+
T Consensus 236 ~~~~~~~~~~l 246 (266)
T 2w6r_A 236 EIDMRELKEYL 246 (266)
T ss_dssp -----------
T ss_pred CCCHHHHHHHH
Confidence 55555555443
No 338
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=57.41 E-value=41 Score=22.62 Aligned_cols=40 Identities=5% Similarity=0.046 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
++.++.+++.. +.|+++-.+-...+....++..|++.++.
T Consensus 180 ~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~~~~Gad~viv 219 (248)
T 1geq_A 180 YDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVV 219 (248)
T ss_dssp HHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhhc-CCCEEEEeecCCHHHHHHHHHcCCCEEEE
Confidence 45777777654 57877666666668888888999999753
No 339
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=57.31 E-value=45 Score=23.08 Aligned_cols=78 Identities=10% Similarity=0.166 Sum_probs=48.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcC-----CeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCH-----HHHHHHHH
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVG-----FKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG-----IEATKAMR 94 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g-----~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g-----~~~~~~l~ 94 (145)
..+|..+|-++...+..+..+...+ -++. ...|..+.+... . ..+|+|++|...+.... .++++.++
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~-~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~ 179 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-T-NTYDVIIVDSSDPIGPAETLFNQNFYEKIY 179 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-C-SCEEEEEEECCCTTTGGGGGSSHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-C-CCceEEEEcCCCCCCcchhhhHHHHHHHHH
Confidence 3579999999998888888775431 1232 566776665443 3 46999999975543221 36677776
Q ss_pred hh-CCCCcEEEEe
Q 045936 95 AM-KVESKIVGVT 106 (145)
Q Consensus 95 ~~-~~~~~ii~lt 106 (145)
+. .|+. ++++.
T Consensus 180 ~~L~pgG-~lv~~ 191 (283)
T 2i7c_A 180 NALKPNG-YCVAQ 191 (283)
T ss_dssp HHEEEEE-EEEEE
T ss_pred HhcCCCc-EEEEE
Confidence 64 3443 44443
No 340
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=57.29 E-value=26 Score=20.39 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=63.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHH---HHhcCCCcc-EEEEeCCCCCCC-HHHHHHHHHhhCCCCcE
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVD---LFRTGAKFH-IVFIDMEMPVMD-GIEATKAMRAMKVESKI 102 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~---~l~~~~~~d-lil~d~~~~~~~-g~~~~~~l~~~~~~~~i 102 (145)
.|++-.++......+..-....||++.-+++.++.-. .+.....+. ++|+.- +.. --+.+..+...+ -.+
T Consensus 4 lilintnndelikkikkevenqgyqvrdvndsdelkkemkklaeeknfekiliisn---dkqllkemlelisklg--ykv 78 (134)
T 2lci_A 4 LILINTNNDELIKKIKKEVENQGYQVRDVNDSDELKKEMKKLAEEKNFEKILIISN---DKQLLKEMLELISKLG--YKV 78 (134)
T ss_dssp EEEEECSCHHHHHHHHHHTTTTTCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEES---CHHHHHHHHHHHHHHT--CCE
T ss_pred EEEEcCCcHHHHHHHHHHHHccCeeeeecCchHHHHHHHHHHHhhcCcceEEEEcC---cHHHHHHHHHHHHHhC--cee
Confidence 4666677778888888888888999999999988644 333334566 334331 111 112333333333 355
Q ss_pred EEEecCCChHHHHHHH-HhcccEE-eeCCCCHHHHHHHHHHH
Q 045936 103 VGVTSRNSETEREVFM-QAGLDLC-YTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~-~~g~~~~-l~kP~~~~~l~~~l~~~ 142 (145)
.++....+........ .....+| +.|--+-++-...++..
T Consensus 79 flllqdqdeneleefkrkiesqgyevrkvtddeealkivref 120 (134)
T 2lci_A 79 FLLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVREF 120 (134)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHH
T ss_pred EEEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHH
Confidence 5565555555555542 3344555 55555666666665554
No 341
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=57.14 E-value=18 Score=24.71 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=47.8
Q ss_pred CHHHHHHHHhcCCCccEEEE---eCCC-CCC-CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCH
Q 045936 58 NGKEAVDLFRTGAKFHIVFI---DMEM-PVM-DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTM 132 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~---d~~~-~~~-~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~ 132 (145)
+..+.++.+.+. ..|.+=+ |-+. |.. -|...++.||+..+. -+-++.. ........+.++||+.+.......
T Consensus 27 ~l~~~i~~~~~~-gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~~~~-DvhLMv~-~p~~~i~~~~~aGAd~itvH~ea~ 103 (237)
T 3cu2_A 27 QLNEEVTTLLEN-QINVLHFDIADGQFSSLFTVGAIGIKYFPTHCFK-DVHLMVR-NQLEVAKAVVANGANLVTLQLEQY 103 (237)
T ss_dssp GHHHHHHHHHHT-TCCEEEEEEEBSSSSSCBCBCTHHHHTSCTTSEE-EEEEECS-CHHHHHHHHHHTTCSEEEEETTCT
T ss_pred cHHHHHHHHHHc-CCCEEEEEEecCccccchhhhHHHHHHHhhhCCC-CeEEEEE-CHHHHHHHHHHcCCCEEEEecCCc
Confidence 455566666542 3454433 4221 322 366788888775443 4444433 335568888999999976666555
Q ss_pred HHHHHHHHHH
Q 045936 133 AKIVPLLEEL 142 (145)
Q Consensus 133 ~~l~~~l~~~ 142 (145)
..+.+.++.+
T Consensus 104 ~~~~~~i~~i 113 (237)
T 3cu2_A 104 HDFALTIEWL 113 (237)
T ss_dssp TSHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 5566666554
No 342
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=56.91 E-value=46 Score=23.05 Aligned_cols=98 Identities=8% Similarity=-0.031 Sum_probs=46.0
Q ss_pred CCccccccccCCCCCCCCCcEEEEEeCCH--HHHHHHHHHHHhcCCeEEEe-cCH--HHHHHHH-hcCCCccEEEEeCCC
Q 045936 8 ASSSKKARISENPVSKNRPYFALVVDDDP--MIRRIHSMILKSVGFKVEVA-ENG--KEAVDLF-RTGAKFHIVFIDMEM 81 (145)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~vlii~~~~--~~~~~l~~~l~~~g~~v~~~-~~~--~~~l~~l-~~~~~~dlil~d~~~ 81 (145)
.+.+.+-+-+..+.....+..++|.+-.. -+-..+...|.+.|+.|..+ .+. .+.+..+ ...... ..+..++
T Consensus 12 ~~~~~~gp~sm~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv 89 (296)
T 3k31_A 12 LEAQTQGPGSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVK--LTVPCDV 89 (296)
T ss_dssp ---------CCCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCC--EEEECCT
T ss_pred ceecccCCccccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCe--EEEEcCC
Confidence 34444444333333333455788888753 67777777777889887644 332 1222222 221223 3333444
Q ss_pred CCCCHH-HHHHHHHhhCCCCcEEEEec
Q 045936 82 PVMDGI-EATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 82 ~~~~g~-~~~~~l~~~~~~~~ii~lt~ 107 (145)
.+.+.. .+++.+.+.+..+-+++-..
T Consensus 90 ~d~~~v~~~~~~~~~~~g~iD~lVnnA 116 (296)
T 3k31_A 90 SDAESVDNMFKVLAEEWGSLDFVVHAV 116 (296)
T ss_dssp TCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 444433 46666665544455555543
No 343
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=56.88 E-value=25 Score=23.32 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=30.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHH
Q 045936 72 FHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIV 136 (145)
Q Consensus 72 ~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~ 136 (145)
.+++=+. +...++.+.++.+++ +...+ -.......+....++..|++..+. |....++.
T Consensus 39 v~~iel~--~k~~~~~~~i~~~~~--~~~~~-gag~vl~~d~~~~A~~~GAd~v~~-~~~d~~v~ 97 (207)
T 2yw3_A 39 VGALEIT--LRTEKGLEALKALRK--SGLLL-GAGTVRSPKEAEAALEAGAAFLVS-PGLLEEVA 97 (207)
T ss_dssp CCEEEEE--CSSTHHHHHHHHHTT--SSCEE-EEESCCSHHHHHHHHHHTCSEEEE-SSCCHHHH
T ss_pred CCEEEEe--CCChHHHHHHHHHhC--CCCEE-EeCeEeeHHHHHHHHHcCCCEEEc-CCCCHHHH
Confidence 5544333 334455666777666 33322 222244556666677777766544 33333443
No 344
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=56.86 E-value=42 Score=22.55 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCeEEEecC---HH---HHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 40 RIHSMILKSVGFKVEVAEN---GK---EAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~~~~~---~~---~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
..+...+++.||.+..+.. .+ +.++.+.. ..+|.||+-.... .+.++.+++. .+|+|++.
T Consensus 27 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~----~~~~~~l~~~--~iPvV~i~ 92 (276)
T 3jy6_A 27 KGISSILESRGYIGVLFDANADIEREKTLLRAIGS-RGFDGLILQSFSN----PQTVQEILHQ--QMPVVSVD 92 (276)
T ss_dssp HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT-TTCSEEEEESSCC----HHHHHHHHTT--SSCEEEES
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEecCCc----HHHHHHHHHC--CCCEEEEe
Confidence 3344555566776553322 11 23444444 3566555543222 3444444432 45555553
No 345
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=56.81 E-value=45 Score=25.43 Aligned_cols=68 Identities=15% Similarity=0.040 Sum_probs=46.1
Q ss_pred cCHHHHHHHHhcCCCccEEEEeCCCCCCCH-HHHHHHHHhhCCC-CcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 57 ENGKEAVDLFRTGAKFHIVFIDMEMPVMDG-IEATKAMRAMKVE-SKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 57 ~~~~~~l~~l~~~~~~dlil~d~~~~~~~g-~~~~~~l~~~~~~-~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.+..+.++.+.+ ...+++.+|.......+ .+.++++++..++ .+++ +......+....+.++|++...
T Consensus 241 ~~~~e~~~~l~e-~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~ 310 (503)
T 1me8_A 241 RDFRERVPALVE-AGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIK 310 (503)
T ss_dssp SSHHHHHHHHHH-HTCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEE
T ss_pred hhHHHHHHHHHh-hhccceEEecccCcccchhhHHHHHHHhCCCCceEe-eccccCHHHHHHHHHhCCCeEE
Confidence 344454555544 35788888876543333 5677888887766 6665 5666777788889999998864
No 346
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=56.76 E-value=42 Score=22.60 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=53.3
Q ss_pred HHHHhcCCe--EEEecCHHHHHHHHhcCCCccEE--EEeC-CCCCCCHHHHHHHHHhhC---CCCcEEEEecCCChHHHH
Q 045936 44 MILKSVGFK--VEVAENGKEAVDLFRTGAKFHIV--FIDM-EMPVMDGIEATKAMRAMK---VESKIVGVTSRNSETERE 115 (145)
Q Consensus 44 ~~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dli--l~d~-~~~~~~g~~~~~~l~~~~---~~~~ii~lt~~~~~~~~~ 115 (145)
..|+..|.. ++.+-+..+++.....+ .+.| +++- .--+.+|.++++.+.+.+ ..-..|+.++..+.....
T Consensus 96 ~~L~~~GI~vn~TlifS~~Qa~~Aa~AG--a~yISPfvgRi~d~~~dG~~~v~~i~~~~~~~~~~t~ilaAS~R~~~~v~ 173 (212)
T 3r8r_A 96 RALTDLGIKTNVTLIFNANQALLAARAG--ATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGLDTQIIAASIRHPQHVT 173 (212)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHHHHHHT--CSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTCCCEEEEBSCCSHHHHH
T ss_pred HHHHHCCCcEEEEEeCCHHHHHHHHHcC--CeEEEeccchhhhcCCChHHHHHHHHHHHHHcCCCCEEEEecCCCHHHHH
Confidence 345667855 55777888888877764 3443 2110 012568888888877632 123345577888888899
Q ss_pred HHHHhcccEEee
Q 045936 116 VFMQAGLDLCYT 127 (145)
Q Consensus 116 ~~~~~g~~~~l~ 127 (145)
.+...|++..-.
T Consensus 174 ~~a~~G~d~~Ti 185 (212)
T 3r8r_A 174 EAALRGAHIGTM 185 (212)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHcCCCEEEc
Confidence 999999997544
No 347
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=56.65 E-value=53 Score=23.70 Aligned_cols=39 Identities=10% Similarity=-0.019 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+++++.+++..+++||++..+-.+.+....++. |++.+.
T Consensus 185 ~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~ 223 (350)
T 3b0p_A 185 HDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVM 223 (350)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEE
T ss_pred HHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEE
Confidence 678888888766889988877778888888887 888863
No 348
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=56.61 E-value=44 Score=22.75 Aligned_cols=80 Identities=10% Similarity=0.017 Sum_probs=48.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe-cCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVA-ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~-~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii 103 (145)
+..++|.+...-+-..+...|.+.|+.|... .+.+.+-+.... ....+..+..++.+.+.. .+++.+.+.+..+-++
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 105 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD-LGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDIL 105 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4578999988888899999998889987744 444443333332 123455555555554443 3566665554445555
Q ss_pred EEe
Q 045936 104 GVT 106 (145)
Q Consensus 104 ~lt 106 (145)
+-.
T Consensus 106 vnn 108 (266)
T 3grp_A 106 VNN 108 (266)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 349
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=56.49 E-value=24 Score=24.78 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=33.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCH--HHHHHHH
Q 045936 70 AKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTM--AKIVPLL 139 (145)
Q Consensus 70 ~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~--~~l~~~l 139 (145)
.++|+||+|+.- . +|...+...|... .-+.....+..|...|+.|=+.. +++...+
T Consensus 138 ~~~DvVLSDMAP-n-SG~~~vD~~Rs~~------------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l 195 (269)
T 2px2_A 138 EISDTLLCDIGE-S-SPSAEIEEQRTLR------------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKL 195 (269)
T ss_dssp CCCSEEEECCCC-C-CSCHHHHHHHHHH------------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHH
T ss_pred CCCCEEEeCCCC-C-CCccHHHHHHHHH------------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHH
Confidence 468999999754 3 5555555555533 11234445666655677787766 5665533
No 350
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=56.46 E-value=42 Score=22.44 Aligned_cols=78 Identities=5% Similarity=0.089 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCccEE-EEeCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHh---cccEEe-----
Q 045936 59 GKEAVDLFRTGAKFHIV-FIDMEMPV---MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQA---GLDLCY----- 126 (145)
Q Consensus 59 ~~~~l~~l~~~~~~dli-l~d~~~~~---~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~---g~~~~l----- 126 (145)
..+..+.+.. ..++.| +.+.+-.+ ...++.++.+++. ...||++-.+-.+.+....+++. |++.++
T Consensus 151 ~~e~~~~~~~-~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDS-EGCSRFVVTDITKDGTLGGPNLDLLAGVADR-TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHH-TTCCCEEEEETTTTTTTSCCCHHHHHHHHTT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHh-CCCCEEEEEecCCccccCCCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 3555555554 346744 55544332 2356788888764 46888888777777888888888 999864
Q ss_pred -eCCCCHHHHHHH
Q 045936 127 -TKPLTMAKIVPL 138 (145)
Q Consensus 127 -~kP~~~~~l~~~ 138 (145)
..|..+.++...
T Consensus 229 ~~~~~~~~~~~~~ 241 (244)
T 2y88_A 229 YARRFTLPQALAA 241 (244)
T ss_dssp HTTSSCHHHHHHH
T ss_pred HCCCcCHHHHHHH
Confidence 457776666554
No 351
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=56.32 E-value=50 Score=23.30 Aligned_cols=116 Identities=10% Similarity=0.034 Sum_probs=63.9
Q ss_pred EEEEEeCCHHHHHHHHHH----HHhcCC---eEEEe---cCHHHHHHHHhc---CCCccEEEEeC-CC-CCCCHHH-HHH
Q 045936 28 FALVVDDDPMIRRIHSMI----LKSVGF---KVEVA---ENGKEAVDLFRT---GAKFHIVFIDM-EM-PVMDGIE-ATK 91 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~----l~~~g~---~v~~~---~~~~~~l~~l~~---~~~~dlil~d~-~~-~~~~g~~-~~~ 91 (145)
-.++.++++......... +...|+ .+..+ .+.++....+.. ....-++++|- +. ...++.+ +.+
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~ 99 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLT 99 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHH
Confidence 456677776544333332 222343 22233 245555544432 12467888885 33 3455665 444
Q ss_pred HHHhhCCCCcEEEEecCCCh----HHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 92 AMRAMKVESKIVGVTSRNSE----TEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 92 ~l~~~~~~~~ii~lt~~~~~----~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+.+-.+++.+|+.++..++ .....++...+.-+-.+|.+..++...+++.+
T Consensus 100 ~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 100 LTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp HHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 55443445666666654332 23445555556667778999999998887764
No 352
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=56.31 E-value=58 Score=24.09 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCe--EEE--ecCHHHHHHHHhcCCCc----cEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCC
Q 045936 39 RRIHSMILKSVGFK--VEV--AENGKEAVDLFRTGAKF----HIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNS 110 (145)
Q Consensus 39 ~~~l~~~l~~~g~~--v~~--~~~~~~~l~~l~~~~~~----dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~ 110 (145)
...++...++.|.. |.. .-+.++....+.. . |++++-....+ -|..+++.+. ..+|+|.. ..
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~---a~~~~dv~v~pS~~Eg-~~~~~lEAma---~G~PvI~s-~~-- 390 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY---LASKGSVFALTSFYEP-FGLAPVEAMA---SGLPAVVT-RN-- 390 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH---HHHTTCEEEECCSCBC-CCSHHHHHHH---TTCCEEEE-SS--
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh---cCcCCCEEEECcccCC-CCcHHHHHHH---cCCCEEEe-cC--
Confidence 66777777776642 432 3345666666553 5 88887544322 3444555443 35677644 22
Q ss_pred hHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 111 ETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 111 ~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
.........|..+++..|.+.+++..+|.++++
T Consensus 391 -~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 391 -GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp -BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred -CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 233455667778899999999999999988763
No 353
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=56.21 E-value=42 Score=22.46 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=52.7
Q ss_pred CHHHHHHHHhcCCCccEE-EEeCCCC---CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHh-----c-ccEEe-
Q 045936 58 NGKEAVDLFRTGAKFHIV-FIDMEMP---VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQA-----G-LDLCY- 126 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dli-l~d~~~~---~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~-----g-~~~~l- 126 (145)
+..+....+.. ..++.| +.+..-. ....+++++.+++.. ..|++.-..-.+.+....+++. | +++++
T Consensus 145 ~~~e~~~~~~~-~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~-~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~v 222 (241)
T 1qo2_A 145 DPVSLLKRLKE-YGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEA-EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIV 222 (241)
T ss_dssp CHHHHHHHHHT-TTCCEEEEEETTHHHHTCCCCHHHHHHHHHHH-TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CHHHHHHHHHh-CCCCEEEEEeecccccCCcCCHHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEe
Confidence 55665555554 346744 4443211 112478888887754 6788888888888888888888 8 98864
Q ss_pred -----eCCCCHHHHHHHH
Q 045936 127 -----TKPLTMAKIVPLL 139 (145)
Q Consensus 127 -----~kP~~~~~l~~~l 139 (145)
..+++.+++.+.+
T Consensus 223 gsal~~~~~~~~~~~~~~ 240 (241)
T 1qo2_A 223 GRAFLEGILTVEVMKRYA 240 (241)
T ss_dssp CHHHHTTSSCHHHHHHHH
T ss_pred eHHHHcCCCCHHHHHHHh
Confidence 4578877776543
No 354
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=56.17 E-value=51 Score=23.38 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=54.5
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhc--CCeEE-EecCHHHHHHHHhcCCCccE-EEEeCCCCCCCHHHHHHHHHhh
Q 045936 21 VSKNRPYFALVVDDDPMIRRIHSMILKSV--GFKVE-VAENGKEAVDLFRTGAKFHI-VFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 21 ~~~~~~~~vlii~~~~~~~~~l~~~l~~~--g~~v~-~~~~~~~~l~~l~~~~~~dl-il~d~~~~~~~g~~~~~~l~~~ 96 (145)
.-+..+++|.|++--..........+... +++++ .++...+..+.+.. .+.+ -.. .+--++ +.
T Consensus 13 ~~~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~--~~~~~~~~------~~~~~l---l~-- 79 (340)
T 1zh8_A 13 MKPLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAK--MVGNPAVF------DSYEEL---LE-- 79 (340)
T ss_dssp ---CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHH--HHSSCEEE------SCHHHH---HH--
T ss_pred cCCCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHH--HhCCCccc------CCHHHH---hc--
Confidence 33445678999998743444444445444 56654 44433333333222 1221 111 111122 22
Q ss_pred CCCCcEEEEecCC--ChHHHHHHHHhcccEEeeCCC--CHHHHHHHHHH
Q 045936 97 KVESKIVGVTSRN--SETEREVFMQAGLDLCYTKPL--TMAKIVPLLEE 141 (145)
Q Consensus 97 ~~~~~ii~lt~~~--~~~~~~~~~~~g~~~~l~kP~--~~~~l~~~l~~ 141 (145)
.+.+-+++++.+. -.+....++++|..-|+-||+ +.++..+.++.
T Consensus 80 ~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 128 (340)
T 1zh8_A 80 SGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVEL 128 (340)
T ss_dssp SSCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 2344555555443 335677788999988999997 55665555443
No 355
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=56.13 E-value=49 Score=23.19 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=8.2
Q ss_pred CCccEEEEeC
Q 045936 70 AKFHIVFIDM 79 (145)
Q Consensus 70 ~~~dlil~d~ 79 (145)
..+|++|+|.
T Consensus 181 ~~~dlvIiDT 190 (296)
T 2px0_A 181 SEYDHVFVDT 190 (296)
T ss_dssp GGSSEEEEEC
T ss_pred cCCCEEEEeC
Confidence 3589999994
No 356
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=56.04 E-value=9.2 Score=25.17 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=35.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeE--EEecCHHHHHHHHhcCCCccEEEEeC-CCCCCCHHHHHHHHHhhCCCCcE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKV--EVAENGKEAVDLFRTGAKFHIVFIDM-EMPVMDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v--~~~~~~~~~l~~l~~~~~~dlil~d~-~~~~~~g~~~~~~l~~~~~~~~i 102 (145)
+++|+++--....+.....+.++.|..+ ..+.+.++.++.+.. .+|+|++|- +.-..+-++.++.+... +.+|
T Consensus 36 g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~--~~dvViIDEaqfl~~~~v~~l~~l~~~--~~~V 111 (191)
T 1xx6_A 36 KQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE--DTEVIAIDEVQFFDDEIVEIVNKIAES--GRRV 111 (191)
T ss_dssp TCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT--TCSEEEECSGGGSCTHHHHHHHHHHHT--TCEE
T ss_pred CCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc--cCCEEEEECCCCCCHHHHHHHHHHHhC--CCEE
Confidence 4567666422222222222233445432 244555566665542 489999994 22222235555555432 6677
Q ss_pred EEEe
Q 045936 103 VGVT 106 (145)
Q Consensus 103 i~lt 106 (145)
|+..
T Consensus 112 i~~G 115 (191)
T 1xx6_A 112 ICAG 115 (191)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6653
No 357
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=56.02 E-value=45 Score=22.65 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCeEEEec--C---HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 40 RIHSMILKSVGFKVEVAE--N---GKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~~~~--~---~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
..+...+++.||.+..+. + ..+.++.+.. ..+|-+|+-.... +. +.++.+.+ ++|+|++..
T Consensus 31 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~--~~-~~~~~~~~---~iPvV~i~~ 96 (289)
T 3k9c_A 31 EQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR-ERCEAAILLGTRF--DT-DELGALAD---RVPALVVAR 96 (289)
T ss_dssp HHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT-TTEEEEEEETCCC--CH-HHHHHHHT---TSCEEEESS
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh-CCCCEEEEECCCC--CH-HHHHHHHc---CCCEEEEcC
Confidence 445566677888765322 1 3445555555 4688666543222 22 44455432 567766644
No 358
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=55.84 E-value=52 Score=23.33 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=56.5
Q ss_pred EEEEEeCCHHH----HHHHHHHHHhcCC-e-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCC
Q 045936 28 FALVVDDDPMI----RRIHSMILKSVGF-K-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVES 100 (145)
Q Consensus 28 ~vlii~~~~~~----~~~l~~~l~~~g~-~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~ 100 (145)
.+++-|++-.. ...++.+-+..+. . .+.+.+.+++.+.+.. .+|.|.+|. .+ .+-++.+.+. ...+
T Consensus 181 ~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a--GaD~I~ld~----~~-~e~l~~~v~~~~~~~ 253 (296)
T 1qap_A 181 AFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA--GADIIMLDN----FN-TDQMREAVKRVNGQA 253 (296)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT--TCSEEEESS----CC-HHHHHHHHHTTCTTC
T ss_pred EEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc--CCCEEEECC----CC-HHHHHHHHHHhCCCC
Confidence 36666655544 3444444444444 3 4478888888888765 389999984 22 2333444333 3345
Q ss_pred cEEEEecCCChHHHHHHHHhcccEEe
Q 045936 101 KIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 101 ~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
++ ..++.-+.+.+......|++.+-
T Consensus 254 ~I-~ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 254 RL-EVSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp CE-EECCCSCHHHHHHHHHTTCSEEE
T ss_pred eE-EEECCCCHHHHHHHHHcCCCEEE
Confidence 44 45666688889999999997653
No 359
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=55.81 E-value=18 Score=23.37 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=44.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCC-CCCCCHHHHHHHHHhh-CCCCcEEEE
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDME-MPVMDGIEATKAMRAM-KVESKIVGV 105 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~-~~~~~g~~~~~~l~~~-~~~~~ii~l 105 (145)
.|+|+|........+...|++.|..+..+...+ ....+.. ..+|.+++-=. .+...+ ...+.++.. ....|++-+
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~-~~~dglil~Gg~~~~~~~-~~~~~i~~~~~~~~PilGI 78 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA-MNPKGIIFSGGPSLENTG-NCEKVLEHYDEFNVPILGI 78 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH-TCCSEEEECCCSCTTCCT-THHHHHHTGGGTCSCEEEE
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc-cCCCEEEECCCCChhhhh-hHHHHHHHHhhCCCeEEEE
Confidence 388999887777888999999998876555432 1222332 24786665322 122122 134455543 346788766
Q ss_pred ec
Q 045936 106 TS 107 (145)
Q Consensus 106 t~ 107 (145)
+.
T Consensus 79 C~ 80 (189)
T 1wl8_A 79 CL 80 (189)
T ss_dssp TH
T ss_pred cH
Confidence 44
No 360
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=55.71 E-value=27 Score=23.84 Aligned_cols=78 Identities=4% Similarity=0.079 Sum_probs=45.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCC-CHHHHHHHHHhh-CCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVM-DGIEATKAMRAM-KVES 100 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~-~g~~~~~~l~~~-~~~~ 100 (145)
+.++..+|-++......+..+...|. .+. ...+..+... ... ..+|+|++...+... +-..+++.+.+. .|+.
T Consensus 90 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG 167 (285)
T 4htf_A 90 GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-HLE-TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGG 167 (285)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-GCS-SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-hcC-CCceEEEECchhhcccCHHHHHHHHHHHcCCCe
Confidence 34788889888888888888776664 232 3344443321 122 469999988655432 335577777664 4444
Q ss_pred cEEEE
Q 045936 101 KIVGV 105 (145)
Q Consensus 101 ~ii~l 105 (145)
.+++.
T Consensus 168 ~l~~~ 172 (285)
T 4htf_A 168 VLSLM 172 (285)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44433
No 361
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=55.58 E-value=45 Score=22.53 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe---------cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHH-HHHHHH
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVA---------ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE-ATKAMR 94 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~---------~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~-~~~~l~ 94 (145)
.+.+||++-.+. .+..+...|...|+.+..+ .+.++..+.+.. ..+|.|++-. .++.+ +.+.+.
T Consensus 132 ~~~~vL~~rg~~-~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~-~~~d~v~ftS----~s~v~~~~~~~~ 205 (254)
T 4es6_A 132 HDPKVLIMRGEG-GREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRA-ERLNGLVVSS----GQGLQNLYQLAA 205 (254)
T ss_dssp SSCEEEEEECSS-CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHH-TTCCEEECCS----HHHHHHHHHHHG
T ss_pred CCCEEEEEcCCc-cHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHh-CCCCEEEEcC----HHHHHHHHHHhh
Confidence 455788877653 5677888888888664321 123445555665 4689887532 23333 444443
Q ss_pred hh---CCCCcEEEEecCCChHHHHHHHHhcccE-EeeCCCCHHHHHHHHHH
Q 045936 95 AM---KVESKIVGVTSRNSETEREVFMQAGLDL-CYTKPLTMAKIVPLLEE 141 (145)
Q Consensus 95 ~~---~~~~~ii~lt~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~l~~ 141 (145)
.. ...++++.+ .+.....+.+.|... ++.+..+.+.|...|.+
T Consensus 206 ~~~~~l~~~~~~aI----G~~Ta~~l~~~G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 206 ADWPEIGRLPLFVP----SPRVAEMARELGAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp GGHHHHTTSCEEES----SHHHHHHHHHTTCSSEEECSSSSHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEE----CHHHHHHHHHcCCCceEECCCCCHHHHHHHHHh
Confidence 21 234566554 344556667788765 45777889999988865
No 362
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=55.50 E-value=39 Score=21.77 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=36.9
Q ss_pred CccEEEEeC-CCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFIDM-EMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d~-~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+.++++|- +.-.....+ +++.+......+.+|+.+.. .... ...+...+..+-.+|++.+++...++..+
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~-~~~~-~~~l~~r~~~i~l~~l~~~e~~~~l~~~~ 198 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD-PQKL-PVTILSRCLQFHLKALDVEQIRHQLEHIL 198 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC-GGGS-CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC-hHhC-CHHHHHHhhhccCCCCCHHHHHHHHHHHH
Confidence 357888883 211222333 44444333333444444433 3222 22333335566678999999988887654
No 363
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=55.38 E-value=46 Score=22.59 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=39.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-------CHHHHHHHHhcCCCccEEEEeCCC
Q 045936 23 KNRPYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-------NGKEAVDLFRTGAKFHIVFIDMEM 81 (145)
Q Consensus 23 ~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-------~~~~~l~~l~~~~~~dlil~d~~~ 81 (145)
+....+|+|.+....+...+...|...|+.|.... +.+...+.+.. ..+|+|+.-...
T Consensus 9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~-~~~d~vih~A~~ 73 (292)
T 1vl0_A 9 HHHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNE-KKPNVVINCAAH 73 (292)
T ss_dssp ---CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHH-HCCSEEEECCCC
T ss_pred ccccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHh-cCCCEEEECCcc
Confidence 34567899999999999999998888898877542 34444444442 248988865543
No 364
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=55.23 E-value=39 Score=21.77 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=38.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~ 79 (145)
+.+|.+..... ....+...+...+..+..+.+..++++.+.. +..|+++.+.
T Consensus 111 g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-G~vDa~~~~~ 162 (239)
T 1lst_A 111 GKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTA-GRLDAALQDE 162 (239)
T ss_dssp TCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHT-TSCSEEEEEH
T ss_pred CCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHc-CCCCEEEeCc
Confidence 45677665554 3445555554557888899999999999998 5799999873
No 365
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=55.11 E-value=39 Score=24.35 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=41.0
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEE------eeC-CCCHHHHHHHHHHHh
Q 045936 87 IEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLC------YTK-PLTMAKIVPLLEELQ 143 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~------l~k-P~~~~~l~~~l~~~~ 143 (145)
..+++.+++..+..|||.+..-.+.+...+.+.+||+.. +.+ |.-..++.+-|...+
T Consensus 265 ~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L 328 (354)
T 3tjx_A 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVM 328 (354)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHHHHHH
Confidence 345666666667889999999999999999999999885 222 655566655555543
No 366
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=55.10 E-value=48 Score=22.72 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=46.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii 103 (145)
+..++|.+...-+-..+...|.+.|+.|..+. +.+.+-+.... ....+..+-.++.+.+.. .+++.+.+.+...-++
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 83 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVA-HGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTL 83 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-TBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH-cCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 44788889888888889888888899877444 44433333322 223444444444444333 4666665554444454
Q ss_pred EE
Q 045936 104 GV 105 (145)
Q Consensus 104 ~l 105 (145)
+-
T Consensus 84 vn 85 (281)
T 3zv4_A 84 IP 85 (281)
T ss_dssp EC
T ss_pred EE
Confidence 43
No 367
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=55.07 E-value=53 Score=23.19 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=43.7
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhcCCeEEE---e----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALVV-DDDPM---IRRIHSMILKSVGFKVEV---A----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii-~~~~~---~~~~l~~~l~~~g~~v~~---~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|.++ +++.. ....++..++..|..++. + .+....+..+.. ..+|+|++... ..+...+++.+++.
T Consensus 142 ~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~~--~~~~~~~~~~~~~~ 218 (375)
T 3i09_A 142 TWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQS-SKAQILGLANA--GGDTVNAIKAAKEF 218 (375)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH-TCCSEEEEECC--HHHHHHHHHHHHHT
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHh-CCCCEEEEecC--chhHHHHHHHHHHc
Confidence 45444 45443 345567777788876542 2 355667777766 46999987542 23456678888877
Q ss_pred CCCCc
Q 045936 97 KVESK 101 (145)
Q Consensus 97 ~~~~~ 101 (145)
....|
T Consensus 219 g~~~~ 223 (375)
T 3i09_A 219 GITKT 223 (375)
T ss_dssp TGGGT
T ss_pred CCCcC
Confidence 65555
No 368
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=54.91 E-value=16 Score=25.15 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCccEEEEeCCC--CCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEM--PVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~--~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
.+.++.+.. ...|+|++.-.. ...+..++++.+|+ ...|++++.... ..+..|+|.|+.
T Consensus 26 ~~~l~~~~~-~GtDaI~vGgs~gvt~~~~~~~v~~ik~--~~~Piil~p~~~------~~~~~gaD~il~ 86 (235)
T 3w01_A 26 DDDLDAICM-SQTDAIMIGGTDDVTEDNVIHLMSKIRR--YPLPLVLEISNI------ESVMPGFDFYFV 86 (235)
T ss_dssp HHHHHHHHT-SSCSEEEECCSSCCCHHHHHHHHHHHTT--SCSCEEEECCCS------TTCCTTCSEEEE
T ss_pred HHHHHHHHH-cCCCEEEECCcCCcCHHHHHHHHHHhcC--cCCCEEEecCCH------HHhhcCCCEEEE
No 369
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=54.81 E-value=11 Score=25.55 Aligned_cols=76 Identities=9% Similarity=0.001 Sum_probs=33.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHhcCCCccEEEEeC-CCCCCCHHHHHHHHHhhCCCCcEEE
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGF--KVEVAENGKEAVDLFRTGAKFHIVFIDM-EMPVMDGIEATKAMRAMKVESKIVG 104 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~~~~dlil~d~-~~~~~~g~~~~~~l~~~~~~~~ii~ 104 (145)
+++++--....+.....+.++.|. ....+.+..+.+..+. ..+|+|++|= +.-..+-.+.+..+.. .+.||++
T Consensus 58 kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~--~~~dvV~IDEaQFf~~~~v~~l~~la~--~gi~Vi~ 133 (219)
T 3e2i_A 58 KVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDL--TNVDVIGIDEVQFFDDEIVSIVEKLSA--DGHRVIV 133 (219)
T ss_dssp CEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCC--TTCSEEEECCGGGSCTHHHHHHHHHHH--TTCEEEE
T ss_pred ceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHh--cCCCEEEEechhcCCHHHHHHHHHHHH--CCCEEEE
Confidence 445544333333333334444442 2334444444444332 3589999984 3333345566666652 4677776
Q ss_pred Eec
Q 045936 105 VTS 107 (145)
Q Consensus 105 lt~ 107 (145)
..-
T Consensus 134 ~GL 136 (219)
T 3e2i_A 134 AGL 136 (219)
T ss_dssp EEE
T ss_pred eec
Confidence 544
No 370
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=54.79 E-value=23 Score=24.31 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCeEEEecCH------HHHHHHHhcCCCccEEEEeC-CC---CC-----------CCHHHHHHHHHhhCC
Q 045936 40 RIHSMILKSVGFKVEVAENG------KEAVDLFRTGAKFHIVFIDM-EM---PV-----------MDGIEATKAMRAMKV 98 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~~~~~~------~~~l~~l~~~~~~dlil~d~-~~---~~-----------~~g~~~~~~l~~~~~ 98 (145)
..++..|+..++.+...... .+..+.+. .+|+||++- .. .. ....+.++..-+.
T Consensus 43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~---~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~-- 117 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN---RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKN-- 117 (256)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH---TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHT--
T ss_pred HHHHHHHHhcCceEEEEecccchhhCCcChhHHh---cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHh--
Confidence 45667777778988766321 11112232 499888763 21 00 2234444444333
Q ss_pred CCcEEEEecCC
Q 045936 99 ESKIVGVTSRN 109 (145)
Q Consensus 99 ~~~ii~lt~~~ 109 (145)
...++++.++.
T Consensus 118 GGgll~igG~~ 128 (256)
T 2gk3_A 118 GGGLLMIGGYL 128 (256)
T ss_dssp TCEEEEECSTT
T ss_pred CCEEEEECChh
Confidence 66777776653
No 371
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=54.69 E-value=44 Score=22.14 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=30.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 71 KFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 71 ~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..|++++-..-. .....++..+++.++..++++-+. ++.....+...|++..+
T Consensus 71 ~ad~vi~~~~~d-~~n~~~~~~a~~~~~~~~iia~~~--~~~~~~~l~~~G~~~vi 123 (234)
T 2aef_A 71 GARAVIVDLESD-SETIHCILGIRKIDESVRIIAEAE--RYENIEQLRMAGADQVI 123 (234)
T ss_dssp TCSEEEECCSCH-HHHHHHHHHHHHHCSSSEEEEECS--SGGGHHHHHHHTCSEEE
T ss_pred hhcEEEEcCCCc-HHHHHHHHHHHHHCCCCeEEEEEC--CHhHHHHHHHCCCCEEE
Confidence 467777654211 122344556666677666665543 34445566688998754
No 372
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=54.33 E-value=38 Score=21.39 Aligned_cols=94 Identities=12% Similarity=0.072 Sum_probs=50.6
Q ss_pred EEEEEeCC--HHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhhCCCCcEE
Q 045936 28 FALVVDDD--PMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAMKVESKIV 103 (145)
Q Consensus 28 ~vlii~~~--~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~~~~~~ii 103 (145)
+|++++.- ......+...|...|..+....+.+.....+..-.+-|++|+ ....+.. ..+.++..++. +++++
T Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~-iS~sG~t~~~~~~~~~ak~~--g~~vi 127 (183)
T 2xhz_A 51 KVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA-ISNSGESSEITALIPVLKRL--HVPLI 127 (183)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEE-ECSSSCCHHHHHHHHHHHTT--TCCEE
T ss_pred eEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEE-EeCCCCCHHHHHHHHHHHHC--CCCEE
Confidence 56666643 334455666677778887766665544332222123455443 2333332 34555555544 67899
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCC
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKP 129 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP 129 (145)
.+|+..+.... .-++..+.-|
T Consensus 128 ~IT~~~~s~la-----~~ad~~l~~~ 148 (183)
T 2xhz_A 128 CITGRPESSMA-----RAADVHLCVK 148 (183)
T ss_dssp EEESCTTSHHH-----HHSSEEEECC
T ss_pred EEECCCCChhH-----HhCCEEEEeC
Confidence 99987655433 2255555444
No 373
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=54.08 E-value=62 Score=23.72 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=44.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcC---C------eEE-EecCHHHHHHHHh-cCCCccEEEEeCCC-CC------CCHHH
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVG---F------KVE-VAENGKEAVDLFR-TGAKFHIVFIDMEM-PV------MDGIE 88 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g---~------~v~-~~~~~~~~l~~l~-~~~~~dlil~d~~~-~~------~~g~~ 88 (145)
.+|..+|-++...+..+..+...+ + ++. ...|+.+.++... ....||+||+|..- |. ....+
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~e 291 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWE 291 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHHH
Confidence 478999999999988888874321 1 232 5678888777541 23579999999754 31 13456
Q ss_pred HHHHH
Q 045936 89 ATKAM 93 (145)
Q Consensus 89 ~~~~l 93 (145)
+.+.+
T Consensus 292 Fy~~~ 296 (364)
T 2qfm_A 292 FLRLI 296 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 374
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=53.78 E-value=69 Score=24.14 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=13.0
Q ss_pred HHHHHHhcCCCccEEEEeCC
Q 045936 61 EAVDLFRTGAKFHIVFIDME 80 (145)
Q Consensus 61 ~~l~~l~~~~~~dlil~d~~ 80 (145)
+++..+.. ..+|+||+|.-
T Consensus 173 ~al~~a~~-~~~DvVIIDTa 191 (443)
T 3dm5_A 173 EGVDYFKS-KGVDIIIVDTA 191 (443)
T ss_dssp HHHHHHHH-TTCSEEEEECC
T ss_pred HHHHHHHh-CCCCEEEEECC
Confidence 45555554 45999999964
No 375
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=53.70 E-value=49 Score=22.41 Aligned_cols=80 Identities=15% Similarity=0.029 Sum_probs=48.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe-c-CHHH---HHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVA-E-NGKE---AVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVE 99 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~-~-~~~~---~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~ 99 (145)
+..|+|.+...-+-..+...|.+.|+.|... . +.+. ....+.. ....+.++..++.+.+.+ .+++.+.+....
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 104 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITE-SGGEAVAIPGDVGNAADIAAMFSAVDRQFGR 104 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHh-cCCcEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 4468888888888899988888899987543 3 3332 2223333 234555555555554444 466666665545
Q ss_pred CcEEEEe
Q 045936 100 SKIVGVT 106 (145)
Q Consensus 100 ~~ii~lt 106 (145)
+-+++-.
T Consensus 105 id~li~n 111 (272)
T 4e3z_A 105 LDGLVNN 111 (272)
T ss_dssp CCEEEEC
T ss_pred CCEEEEC
Confidence 5555543
No 376
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=53.66 E-value=39 Score=24.70 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 87 IEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 87 ~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
++.++.+++..+ .+||+...+-.+.+...+++..||+.+.
T Consensus 285 ~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~ 325 (367)
T 3zwt_A 285 TQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQ 325 (367)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 478888888754 7999999999999999999999998863
No 377
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=53.49 E-value=20 Score=23.03 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=28.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh--cCCeEEEecC--HHHHHHHHhcCCCccEEEEeCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKS--VGFKVEVAEN--GKEAVDLFRTGAKFHIVFIDME 80 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~--~g~~v~~~~~--~~~~l~~l~~~~~~dlil~d~~ 80 (145)
+.+|+++|-++.. .+..++.. .++.+..... ..+.+..++. .+|+||+|.-
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~yD~viiD~~ 84 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAASEKDVYGIRKDLA--DYDFAIVDGA 84 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCSHHHHHTHHHHTT--TSSEEEEECC
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCcHHHHHHHHHhcC--CCCEEEEECC
Confidence 4579999987653 33344432 2355554433 2233444433 4888888863
No 378
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=53.39 E-value=54 Score=22.83 Aligned_cols=54 Identities=19% Similarity=0.039 Sum_probs=38.7
Q ss_pred HHHHHHHHhhCCC-CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVE-SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~-~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+.++..++..+. .++.+-+ +..+....+.+.|++.....+++++.+...++.+
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev--~tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l 223 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIEC--ESFEEAKNAMNAGADIVMCDNLSVLETKEIAAYR 223 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEE--SSHHHHHHHHHHTCSEEEEETCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEc--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 5677777777664 4555433 3346677888999999988899999988766543
No 379
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=53.37 E-value=57 Score=23.12 Aligned_cols=79 Identities=8% Similarity=-0.053 Sum_probs=49.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCC-eEEEec---CHHHHHHHHhcCCCccEEEEeCCCC-----------CCC-HHHHH
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGF-KVEVAE---NGKEAVDLFRTGAKFHIVFIDMEMP-----------VMD-GIEAT 90 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~-~v~~~~---~~~~~l~~l~~~~~~dlil~d~~~~-----------~~~-g~~~~ 90 (145)
|+|+|.+....+...+...|...|+ .+..++ +.++.-+.+. .+|+|+.-.... ... ...++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~---~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~ 77 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALL---KADFIVHLAGVNRPEHDKEFSLGNVSYLDHVL 77 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHH---HCSEEEECCCSBCTTCSTTCSSSCCBHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhc---cCCEEEECCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 5799999888888888888877887 777553 3444434443 378887543221 112 34466
Q ss_pred HHHHhhCCCCcEEEEecC
Q 045936 91 KAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 91 ~~l~~~~~~~~ii~lt~~ 108 (145)
+..++.....+++.+++.
T Consensus 78 ~a~~~~~~~~~~v~~Ss~ 95 (369)
T 3st7_A 78 DILTRNTKKPAILLSSSI 95 (369)
T ss_dssp HHHTTCSSCCEEEEEEEG
T ss_pred HHHHHhCCCCeEEEeCch
Confidence 666655443467777653
No 380
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=53.33 E-value=40 Score=23.64 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 87 IEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 87 ~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
++.++.+++..+ ++||+....-.+.+....++..||+.+
T Consensus 229 ~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V 268 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATML 268 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 567788877643 789999988889999999999999886
No 381
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=53.23 E-value=28 Score=23.49 Aligned_cols=77 Identities=8% Similarity=0.114 Sum_probs=47.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHHHHhc---CCCccEEEEeCCCCCCCHHHHHHHHHhh-CC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVDLFRT---GAKFHIVFIDMEMPVMDGIEATKAMRAM-KV 98 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~~l~~---~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~ 98 (145)
..+|..+|-++......+..++..|. .+. ...+..+.+..+.. ...+|+|++|.. ..+-..+++.+.+. .|
T Consensus 85 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~Lkp 162 (242)
T 3r3h_A 85 DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD--KTNYLNYYELALKLVTP 162 (242)
T ss_dssp TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC--GGGHHHHHHHHHHHEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC--hHHhHHHHHHHHHhcCC
Confidence 34789999888877777777877764 243 55677776665421 146999999975 22333455555443 34
Q ss_pred CCcEEEE
Q 045936 99 ESKIVGV 105 (145)
Q Consensus 99 ~~~ii~l 105 (145)
+. ++++
T Consensus 163 GG-~lv~ 168 (242)
T 3r3h_A 163 KG-LIAI 168 (242)
T ss_dssp EE-EEEE
T ss_pred Ce-EEEE
Confidence 33 4444
No 382
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=53.10 E-value=35 Score=22.78 Aligned_cols=54 Identities=7% Similarity=-0.053 Sum_probs=39.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEM 81 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~ 81 (145)
.++..+|-++...+..+......+..+. ...+.++....+.. ..+|.|++|.-.
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~FD~i~~D~~~ 138 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD-GHFDGILYDTYP 138 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT-TCEEEEEECCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc-cCCceEEEeeee
Confidence 4688999999999988888877776554 45666666554444 469999998644
No 383
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=53.10 E-value=51 Score=22.43 Aligned_cols=61 Identities=8% Similarity=0.114 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCeEEEecC-----HHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 045936 40 RIHSMILKSVGFKVEVAEN-----GKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~~~~~-----~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt 106 (145)
..+...+.+.||.+..+.. ..+.++.+.. ..+|-+|+-...... +.++.+++. ++|+|++.
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~---~~~~~l~~~--~iPvV~~~ 95 (294)
T 3qk7_A 30 SWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET-RRVDALIVAHTQPED---FRLQYLQKQ--NFPFLALG 95 (294)
T ss_dssp HHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH-TCCSEEEECSCCSSC---HHHHHHHHT--TCCEEEES
T ss_pred HHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc-CCCCEEEEeCCCCCh---HHHHHHHhC--CCCEEEEC
Confidence 4445566667877553321 2334555554 356755553222111 334444433 34555553
No 384
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=53.08 E-value=48 Score=22.16 Aligned_cols=81 Identities=16% Similarity=0.062 Sum_probs=47.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcE
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKI 102 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~i 102 (145)
.+..++|.+-..-+-..+...|.+.|+.|..+. +.+.+.+.... ....+..+..++.+.+.. .+++.+.+.+..+-+
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~ 83 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAAS-IGKKARAIAADISDPGSVKALFAEIQALTGGIDI 83 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-HCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence 345788888888888888888888899877544 44433333222 123444444444444433 466666665544555
Q ss_pred EEEe
Q 045936 103 VGVT 106 (145)
Q Consensus 103 i~lt 106 (145)
++-.
T Consensus 84 lv~n 87 (247)
T 3rwb_A 84 LVNN 87 (247)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5543
No 385
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=52.98 E-value=23 Score=23.64 Aligned_cols=75 Identities=9% Similarity=0.021 Sum_probs=46.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCe--EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEE
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFK--VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVESKIV 103 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~--v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ii 103 (145)
+|..+|-++......+..+...|.. +. ...+..+. . ... ..+|+|++...+...+-..+++.+.+. .|+..++
T Consensus 71 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~-~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~ 147 (257)
T 3f4k_A 71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-FQN-EELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIA 147 (257)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-SCT-TCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-CCC-CCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEE
Confidence 7888888888888777777766632 32 23333221 1 112 469999998777666656677777664 4544444
Q ss_pred EE
Q 045936 104 GV 105 (145)
Q Consensus 104 ~l 105 (145)
+.
T Consensus 148 ~~ 149 (257)
T 3f4k_A 148 VS 149 (257)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 386
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=52.95 E-value=40 Score=24.56 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCccEEEEeCC--CCC---CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhccc
Q 045936 61 EAVDLFRTGAKFHIVFIDME--MPV---MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLD 123 (145)
Q Consensus 61 ~~l~~l~~~~~~dlil~d~~--~~~---~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~ 123 (145)
.+++.+..... +++|+-.. .|. .--+..+..|++.++++||..-+..........|...||+
T Consensus 165 ~Ave~i~~~G~-~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~G~~~~~AAvAlGA~ 231 (349)
T 2wqp_A 165 KSVEIIREAGV-PYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLDNYACLGAVALGGS 231 (349)
T ss_dssp HHHHHHHHHTC-CEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHHHHHHHTCC
T ss_pred HHHHHHHHcCC-CEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCCcHHHHHHHHHhCCC
Confidence 35566654334 88987532 222 1134567888888778898643334456667778889998
No 387
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=52.88 E-value=36 Score=20.59 Aligned_cols=79 Identities=18% Similarity=0.078 Sum_probs=47.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 105 (145)
+.+|+|++-.. ....+...|...|+.++.+....+.++.++. ....++..|... .+.++.. .-....++++
T Consensus 7 ~~~viIiG~G~-~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~-----~~~l~~a--~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGYGR-VGSLLGEKLLASDIPLVVIETSRTRVDELRE-RGVRAVLGNAAN-----EEIMQLA--HLECAKWLIL 77 (140)
T ss_dssp CSCEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEESCTTS-----HHHHHHT--TGGGCSEEEE
T ss_pred CCCEEEECcCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-cCCCEEECCCCC-----HHHHHhc--CcccCCEEEE
Confidence 44799999865 5666777777889998877766666666665 345666555422 1222222 1123456666
Q ss_pred ecCCChHH
Q 045936 106 TSRNSETE 113 (145)
Q Consensus 106 t~~~~~~~ 113 (145)
+...+...
T Consensus 78 ~~~~~~~n 85 (140)
T 3fwz_A 78 TIPNGYEA 85 (140)
T ss_dssp CCSCHHHH
T ss_pred ECCChHHH
Confidence 65555443
No 388
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=52.55 E-value=43 Score=21.40 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCeEE---EecCHHHHH-HHH---hcCCCccEEEEeCCC
Q 045936 37 MIRRIHSMILKSVGFKVE---VAENGKEAV-DLF---RTGAKFHIVFIDMEM 81 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~v~---~~~~~~~~l-~~l---~~~~~~dlil~d~~~ 81 (145)
.....|...|.+.|+.+. .+.|..+.+ +.+ .....+|+||+.--.
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 345678999999998865 455544432 222 222468999987544
No 389
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=52.53 E-value=51 Score=22.26 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=47.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEE-e-cCHHH---HHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEV-A-ENGKE---AVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVE 99 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~-~-~~~~~---~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~ 99 (145)
+..|+|.+...-+...+...|.+.|+.+.. . .+.+. ..+.+.. ....+.++..++.+.+.. ++++.+.+....
T Consensus 26 ~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 104 (267)
T 4iiu_A 26 SRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVA-NGGNGRLLSFDVANREQCREVLEHEIAQHGA 104 (267)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 347899999888889999988889998743 3 33333 3333333 224455555555554443 456666555444
Q ss_pred CcEEEEe
Q 045936 100 SKIVGVT 106 (145)
Q Consensus 100 ~~ii~lt 106 (145)
+-+++-.
T Consensus 105 id~li~n 111 (267)
T 4iiu_A 105 WYGVVSN 111 (267)
T ss_dssp CSEEEEC
T ss_pred ccEEEEC
Confidence 5555443
No 390
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=52.46 E-value=57 Score=22.78 Aligned_cols=98 Identities=7% Similarity=-0.012 Sum_probs=55.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEE-Eec--CHHHHHHHHhcCCCccEEEEeCCCC--CC------CHHHHHHHHHhhC
Q 045936 29 ALVVDDDPMIRRIHSMILKSVGFKVE-VAE--NGKEAVDLFRTGAKFHIVFIDMEMP--VM------DGIEATKAMRAMK 97 (145)
Q Consensus 29 vlii~~~~~~~~~l~~~l~~~g~~v~-~~~--~~~~~l~~l~~~~~~dlil~d~~~~--~~------~g~~~~~~l~~~~ 97 (145)
+++.|-.+.....+...++..|.... .+. +..+-++.+.+ ...+.|-+=.... +. +-.++++.+|+..
T Consensus 129 vIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~-~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~ 207 (271)
T 3nav_A 129 VLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQ-LGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD 207 (271)
T ss_dssp EEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHH-HCCSCEEECCCC--------CCHHHHHHHHHHHHTT
T ss_pred EEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH-HCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc
Confidence 45555555556777888888886533 222 33344444433 1234343311111 11 1245777777754
Q ss_pred CCCcEEEEecCCChHHHHHHHHhcccEEeeC
Q 045936 98 VESKIVGVTSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 98 ~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~k 128 (145)
+.|+++=.+-.+++....+...|+++.+.-
T Consensus 208 -~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 208 -APPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp -CCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred -CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 577765455556777777899999998653
No 391
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=52.40 E-value=51 Score=22.22 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCeEEEec---CHH---HHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 39 RRIHSMILKSVGFKVEVAE---NGK---EAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v~~~~---~~~---~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
...+...+++.||.+..+. +.+ +.++.+.. ..+|.||+-...+. ...+.++.+.+. ++|++++..
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~-~~~~~~~~~~~~--~iPvV~~~~ 97 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVH-LKVDAIFITTLDDV-YIGSAIEEAKKA--GIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH-TTCSEEEEECSCTT-TTHHHHHHHHHT--TCCEEEESS
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChH-HHHHHHHHHHHc--CCCEEEecC
Confidence 3455667778899876443 222 34555555 46897776432222 222556666554 567777744
No 392
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=52.16 E-value=60 Score=22.98 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=45.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc--CC---eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCH-----HHHHHHHH
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV--GF---KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDG-----IEATKAMR 94 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~--g~---~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g-----~~~~~~l~ 94 (145)
..+|..+|-++...+..+..+... |+ ++. ...|..+.+.. .. ..+|+|++|...+.... .++++.++
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~-~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~ 209 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HK-NEFDVIITDSSDPVGPAESLFGQSYYELLR 209 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CT-TCEEEEEECCC-------------HHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cC-CCceEEEEcCCCCCCcchhhhHHHHHHHHH
Confidence 358999999999888888877543 22 233 56677665544 22 46999999975432211 35666665
Q ss_pred hh-CCCCcEEEE
Q 045936 95 AM-KVESKIVGV 105 (145)
Q Consensus 95 ~~-~~~~~ii~l 105 (145)
+. .|+. ++++
T Consensus 210 ~~LkpgG-~lv~ 220 (314)
T 2b2c_A 210 DALKEDG-ILSS 220 (314)
T ss_dssp HHEEEEE-EEEE
T ss_pred hhcCCCe-EEEE
Confidence 54 3333 4444
No 393
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=52.02 E-value=47 Score=21.73 Aligned_cols=81 Identities=5% Similarity=-0.034 Sum_probs=48.0
Q ss_pred CcEEEEEeCCHHHHHH----HHHHHHhcCCeEEE----ecCHHHHHHHHhc----CCCccEEEEeCCCCCCC--------
Q 045936 26 PYFALVVDDDPMIRRI----HSMILKSVGFKVEV----AENGKEAVDLFRT----GAKFHIVFIDMEMPVMD-------- 85 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~----l~~~l~~~g~~v~~----~~~~~~~l~~l~~----~~~~dlil~d~~~~~~~-------- 85 (145)
..+|++++|.-..... +...+. ++.+.- ..+..+.+..+.. ...||+|++.+-..+..
T Consensus 38 ~~~i~~~GDSit~g~~~~~~~~~~l~--~~~v~n~g~~G~t~~~~~~~~~~~~l~~~~pd~vvi~~G~ND~~~~~~~~~~ 115 (232)
T 1es9_A 38 EPEVVFIGDSLVQLMHQCEIWRELFS--PLHALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTG 115 (232)
T ss_dssp CCSEEEEESHHHHTHHHHSCHHHHTG--GGCEEEEECTTCCHHHHHHHHHTTTTTTCCCSEEEEECCTTCTTSCHHHHHH
T ss_pred CCCEEEEechHhhccCccccHHHHCC--CCceEEeecccccHHHHHHHHhcCccccCCCCEEEEEeecCCCCCCHHHHHH
Confidence 4579999998665432 233333 233331 2244555555543 13689999876555432
Q ss_pred -HHHHHHHHHhhCCCCcEEEEecC
Q 045936 86 -GIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 86 -g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
-..+++.+++..|..+|++++..
T Consensus 116 ~l~~~i~~l~~~~p~~~ii~~~~~ 139 (232)
T 1es9_A 116 GIKAIVQLVNERQPQARVVVLGLL 139 (232)
T ss_dssp HHHHHHHHHHHHSTTCEEEEECCC
T ss_pred HHHHHHHHHHHHCCCCeEEEecCC
Confidence 22467777777788888888654
No 394
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=51.98 E-value=46 Score=21.61 Aligned_cols=79 Identities=9% Similarity=0.118 Sum_probs=51.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHHHHhcC--CCccEEEEeCCCCCCCHHHHHHHHHhh-CCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVDLFRTG--AKFHIVFIDMEMPVMDGIEATKAMRAM-KVE 99 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~~l~~~--~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~ 99 (145)
..+|..+|-++......+..+...|+ .+. ...+..+.+..+... ..+|+|++|...+ .-..+++.+.+. .|+
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~~~~L~pg 160 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWALKLSRPG 160 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHHHHTCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHHHHhcCCC
Confidence 45899999999999999988887775 243 566777666554321 3599999986522 234566666554 444
Q ss_pred CcEEEEec
Q 045936 100 SKIVGVTS 107 (145)
Q Consensus 100 ~~ii~lt~ 107 (145)
. ++++.+
T Consensus 161 G-~lv~~~ 167 (223)
T 3duw_A 161 T-VIIGDN 167 (223)
T ss_dssp C-EEEEES
T ss_pred c-EEEEeC
Confidence 4 555533
No 395
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=51.96 E-value=50 Score=22.02 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=49.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-----CHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-----NGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKV 98 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-----~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~ 98 (145)
++.+|+|.+...-+-..+...|.+.|+.+.... ...+....+.. ...++..+..++.+.+.. .+++.+.+...
T Consensus 12 ~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 90 (256)
T 3ezl_A 12 SQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKA-LGFDFYASEGNVGDWDSTKQAFDKVKAEVG 90 (256)
T ss_dssp -CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-cCCeeEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 455788888888888888888888898876432 33444444443 234555555555554443 46666666654
Q ss_pred CCcEEEEe
Q 045936 99 ESKIVGVT 106 (145)
Q Consensus 99 ~~~ii~lt 106 (145)
.+-+++-.
T Consensus 91 ~id~lv~~ 98 (256)
T 3ezl_A 91 EIDVLVNN 98 (256)
T ss_dssp CEEEEEEC
T ss_pred CCCEEEEC
Confidence 45555443
No 396
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=51.93 E-value=31 Score=23.24 Aligned_cols=81 Identities=10% Similarity=-0.006 Sum_probs=46.5
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHHhcCCeEEEec-C---H-HHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhC
Q 045936 26 PYFALVVDDD--PMIRRIHSMILKSVGFKVEVAE-N---G-KEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMK 97 (145)
Q Consensus 26 ~~~vlii~~~--~~~~~~l~~~l~~~g~~v~~~~-~---~-~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~ 97 (145)
+..++|.+.. .-+-..+...|.+.|+.+.... + . ++.++.+.......+.++..++.+.+.. .+++.+.+.+
T Consensus 20 ~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 99 (267)
T 3gdg_A 20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADF 99 (267)
T ss_dssp TCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 4467887776 6677777777878898876442 2 1 4444444321123455544445554443 4667776665
Q ss_pred CCCcEEEEe
Q 045936 98 VESKIVGVT 106 (145)
Q Consensus 98 ~~~~ii~lt 106 (145)
..+-+++-.
T Consensus 100 g~id~li~n 108 (267)
T 3gdg_A 100 GQIDAFIAN 108 (267)
T ss_dssp SCCSEEEEC
T ss_pred CCCCEEEEC
Confidence 555555543
No 397
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=51.92 E-value=53 Score=22.30 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=46.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEE-ecCHHHH---HHHHhcCC-CccEEEEeCCCCCCCHH-HHHHHHHhhCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEV-AENGKEA---VDLFRTGA-KFHIVFIDMEMPVMDGI-EATKAMRAMKVE 99 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~-~~~~~~~---l~~l~~~~-~~dlil~d~~~~~~~g~-~~~~~l~~~~~~ 99 (145)
+..++|.+...-+-..+...|.+.|+.|.. ..+.+.. ...+.... ...+.++..++.+.+.+ .+++.+.+....
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 111 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG 111 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 457999999999988998888888998774 4444332 22232211 12344444444444433 355555554434
Q ss_pred CcEEEE
Q 045936 100 SKIVGV 105 (145)
Q Consensus 100 ~~ii~l 105 (145)
+-+++-
T Consensus 112 iD~vi~ 117 (279)
T 1xg5_A 112 VDICIN 117 (279)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 445544
No 398
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=51.89 E-value=78 Score=24.22 Aligned_cols=98 Identities=9% Similarity=0.040 Sum_probs=59.7
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhcC-CeEE--EecCHHHHHHHHhcCCCccEEEEeCCCCC-----------CCHHHH
Q 045936 28 FALVVDD----DPMIRRIHSMILKSVG-FKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMPV-----------MDGIEA 89 (145)
Q Consensus 28 ~vlii~~----~~~~~~~l~~~l~~~g-~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~-----------~~g~~~ 89 (145)
.+++++. .....+.++.+-+..+ ..+. .+.+.+++...... ..|.|.+...-.. .+.+..
T Consensus 270 d~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a--Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~ 347 (511)
T 3usb_A 270 DAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA--GANVVKVGIGPGSICTTRVVAGVGVPQLTA 347 (511)
T ss_dssp SEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH--TCSEEEECSSCSTTCCHHHHHCCCCCHHHH
T ss_pred ceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh--CCCEEEECCCCccccccccccCCCCCcHHH
Confidence 4555552 2223334444444443 3433 67788888777776 3788877432211 334555
Q ss_pred HHHHHhh--CCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 90 TKAMRAM--KVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 90 ~~~l~~~--~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+..+.+. ...+|||.-.+-.....+..++..||+....
T Consensus 348 l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 348 VYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 5555432 2358888888888999999999999999753
No 399
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=51.82 E-value=63 Score=23.12 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=47.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc--CC---eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCC--C---HHHHHHHHH
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV--GF---KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVM--D---GIEATKAMR 94 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~--g~---~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~--~---g~~~~~~l~ 94 (145)
..+|..+|-++......+..+... |+ ++. ...|..+.+..... ..+|+|++|...+.. . ..++++.++
T Consensus 144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~-~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~ 222 (334)
T 1xj5_A 144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE-GSYDAVIVDSSDPIGPAKELFEKPFFQSVA 222 (334)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT-TCEEEEEECCCCTTSGGGGGGSHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccC-CCccEEEECCCCccCcchhhhHHHHHHHHH
Confidence 358999999999888888777542 22 233 45666665443322 469999998754332 1 135666666
Q ss_pred hh-CCCCcEEEE
Q 045936 95 AM-KVESKIVGV 105 (145)
Q Consensus 95 ~~-~~~~~ii~l 105 (145)
+. .|+. ++++
T Consensus 223 ~~LkpgG-~lv~ 233 (334)
T 1xj5_A 223 RALRPGG-VVCT 233 (334)
T ss_dssp HHEEEEE-EEEE
T ss_pred HhcCCCc-EEEE
Confidence 54 3433 4444
No 400
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=51.72 E-value=57 Score=22.61 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=48.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe-cCHHHH---HHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVA-ENGKEA---VDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVE 99 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~-~~~~~~---l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~ 99 (145)
.+..|+|.+...-+...+...|.+.|+.|..+ .+.+.+ .+.+.. ....+.++..++.+.+.. ++++.+.+....
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRG-QGFDAHGVVCDVRHLDEMVRLADEAFRLLGG 108 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 45579999999999999999998889987744 444332 223333 223444444444444443 456666555444
Q ss_pred CcEEEEe
Q 045936 100 SKIVGVT 106 (145)
Q Consensus 100 ~~ii~lt 106 (145)
+-+++-.
T Consensus 109 id~lvnn 115 (301)
T 3tjr_A 109 VDVVFSN 115 (301)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 5555543
No 401
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=51.64 E-value=63 Score=23.11 Aligned_cols=81 Identities=9% Similarity=-0.044 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe-cC----------HHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHH
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVA-EN----------GKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKA 92 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~-~~----------~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~ 92 (145)
.+..++|.+...-+-..+...|.+.|+.|+.+ .+ .+++.+.+.. ....+..+..++.+.+.+ .+++.
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~-~g~~~~~~~~Dv~d~~~v~~~~~~ 122 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEA-VGGKALPCIVDVRDEQQISAAVEK 122 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHH-TTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHh-cCCeEEEEEccCCCHHHHHHHHHH
Confidence 34578999999889889988888889887643 33 2344444544 234555555555554444 46666
Q ss_pred HHhhCCCCcEEEEe
Q 045936 93 MRAMKVESKIVGVT 106 (145)
Q Consensus 93 l~~~~~~~~ii~lt 106 (145)
+.+.+..+-+++-.
T Consensus 123 ~~~~~g~iDilVnn 136 (346)
T 3kvo_A 123 AIKKFGGIDILVNN 136 (346)
T ss_dssp HHHHHSCCCEEEEC
T ss_pred HHHHcCCCCEEEEC
Confidence 66654445555543
No 402
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=51.47 E-value=53 Score=22.20 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe--cCHHHHHH---HHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVA--ENGKEAVD---LFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKV 98 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~--~~~~~~l~---~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~ 98 (145)
.+..++|.+...-+...+...|.+.|+.+... .+.+.... .+.. ....+.++..++.+.+.. .+++.+.+...
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 102 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERD-AGRDFKAYAVDVADFESCERCAEKVLADFG 102 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHT-TTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 34467888888888888888888889887643 34333222 2222 223444444444454443 46666666554
Q ss_pred CCcEEEEe
Q 045936 99 ESKIVGVT 106 (145)
Q Consensus 99 ~~~ii~lt 106 (145)
.+-+++-.
T Consensus 103 ~id~li~n 110 (269)
T 3gk3_A 103 KVDVLINN 110 (269)
T ss_dssp CCSEEEEC
T ss_pred CCCEEEEC
Confidence 55555543
No 403
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=51.47 E-value=44 Score=21.25 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=60.4
Q ss_pred CCcEEEEEeCCH-----H-HHHHHHHHHHhcCCeEEE---e---------c---C----HHHHHHHHhcCCCccEEEEeC
Q 045936 25 RPYFALVVDDDP-----M-IRRIHSMILKSVGFKVEV---A---------E---N----GKEAVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 25 ~~~~vlii~~~~-----~-~~~~l~~~l~~~g~~v~~---~---------~---~----~~~~l~~l~~~~~~dlil~d~ 79 (145)
+.++|.+...-- . ....+...|+..| .+.. + . + .+..++.++. -|+|+.+.
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~---aD~vva~~ 85 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ---ADVVVAEV 85 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH---CSEEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh---CCEEEEEC
Confidence 456888885333 1 3577888888888 6521 0 0 1 1222344443 58888877
Q ss_pred CCCC-CCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccE---EeeCCCCHHHHHHHHHHHhh
Q 045936 80 EMPV-MDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDL---CYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 80 ~~~~-~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~---~l~kP~~~~~l~~~l~~~~~ 144 (145)
.-++ ..++++--. ...+.||+++......... .++-.|... +-...++.+++...|.+.++
T Consensus 86 ~~~d~Gt~~EiGyA---~algKPVi~l~~~~~~~~~-n~M~~g~~~~~~~~~~~y~~~el~~~l~~~~~ 150 (165)
T 2khz_A 86 TQPSLGVGYELGRA---VALGKPILCLFRPQSGRVL-SAMIRGAADGSRFQVWDYAEGEVETMLDRYFE 150 (165)
T ss_dssp SSCCHHHHHHHHHH---HHTCSSEEEEECTTTTCCC-CHHHHHTCCSSSEEEEECCTTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHH---HHCCCEEEEEEcCCCCCcc-hhhhcccCccceeEEEecCHHHHHHHHHHHHH
Confidence 5222 113344332 2346788888655421111 122234432 33444588899888887764
No 404
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=51.14 E-value=50 Score=21.81 Aligned_cols=75 Identities=13% Similarity=0.231 Sum_probs=49.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHH-HHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVD-LFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVES 100 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~-~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~ 100 (145)
..+|..+|-++......+..+...|+ .+. ...+..+.+. .+ . ..+|+|++|.... .-..+++.+.+. .|+.
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~-~~fD~V~~~~~~~--~~~~~l~~~~~~LkpgG 170 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-D-KVYDMIFIDAAKA--QSKKFFEIYTPLLKHQG 170 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-T-SCEEEEEEETTSS--SHHHHHHHHGGGEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-c-CCccEEEEcCcHH--HHHHHHHHHHHhcCCCe
Confidence 45899999999999999998887774 243 4556555444 33 3 4699999996533 334566666553 3433
Q ss_pred cEEEE
Q 045936 101 KIVGV 105 (145)
Q Consensus 101 ~ii~l 105 (145)
++++
T Consensus 171 -~lv~ 174 (232)
T 3ntv_A 171 -LVIT 174 (232)
T ss_dssp -EEEE
T ss_pred -EEEE
Confidence 4444
No 405
>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str}
Probab=51.12 E-value=35 Score=25.15 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=8.7
Q ss_pred cEEEEEeCCHHHHHHHHH
Q 045936 27 YFALVVDDDPMIRRIHSM 44 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~ 44 (145)
+.|.++|-+......|..
T Consensus 25 ~~v~f~dv~~~~i~~Ln~ 42 (382)
T 3h2z_A 25 IQLTFADVNQVVLDALNA 42 (382)
T ss_dssp CEEEEEESCHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHhc
Confidence 345555555544444433
No 406
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=51.12 E-value=29 Score=24.95 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=9.2
Q ss_pred CCccEEEEeCC
Q 045936 70 AKFHIVFIDME 80 (145)
Q Consensus 70 ~~~dlil~d~~ 80 (145)
.++|+|+||+-
T Consensus 159 ~~~D~ivcDig 169 (321)
T 3lkz_A 159 ECCDTLLCDIG 169 (321)
T ss_dssp CCCSEEEECCC
T ss_pred CCCCEEEEECc
Confidence 46899999986
No 407
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=50.99 E-value=54 Score=22.13 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCeEEEecC---HH---HHHHHHhcCCCccEEEEe
Q 045936 39 RRIHSMILKSVGFKVEVAEN---GK---EAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v~~~~~---~~---~~l~~l~~~~~~dlil~d 78 (145)
...+...+++.||.+..+.. .+ +.++.+.. ..+|.+|+-
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~ 71 (291)
T 3egc_A 27 ASGVESEARHKGYSVLLANTAEDIVREREAVGQFFE-RRVDGLILA 71 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH-CCCCEEEEe
Confidence 34455566667777654332 22 23444444 346755543
No 408
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=50.97 E-value=47 Score=21.56 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~ 79 (145)
.+ +|-+...... ...+...+..+..+.+.+++++.+.. +..|+++.|.
T Consensus 106 ~g-~igv~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~L~~-GrvDa~i~~~ 153 (232)
T 3i6v_A 106 SG-IVAAQTATIQ-----AGYIAESGATLVEFATPEETIAAVRN-GEADAVFADR 153 (232)
T ss_dssp TS-EEEEETTSHH-----HHHHHHSSSEEEEESSHHHHHHHHHT-TSSSEEEEEH
T ss_pred CC-CEEEecCchH-----HHHHHhcCCeEEEeCCHHHHHHHHHc-CCcCEEEECh
Confidence 45 7777766543 23344447888899999999999998 5799999874
No 409
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=50.93 E-value=61 Score=22.73 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCcEE--EEecCCChHHHHHHHHhcccEEe
Q 045936 86 GIEATKAMRAMKVESKIV--GVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii--~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
++++++.+++. ..+|++ ...+-.+.+....++..|++.+.
T Consensus 195 ~~~~i~~i~~~-~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~ 236 (305)
T 2nv1_A 195 PYELLLQIKKD-GKLPVVNFAAGGVATPADAALMMQLGADGVF 236 (305)
T ss_dssp CHHHHHHHHHH-TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEE
T ss_pred cHHHHHHHHHh-cCCCEEEEeccCCCCHHHHHHHHHcCCCEEE
Confidence 35677777664 356776 34444478888888899999874
No 410
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=50.92 E-value=71 Score=23.45 Aligned_cols=75 Identities=12% Similarity=0.035 Sum_probs=50.6
Q ss_pred CCeEE--EecCHHHHHHHHhcCCCccEEEEeCCC-----------CCCCHHHHHHHHHhh--CCCCcEEEEecCCChHHH
Q 045936 50 GFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEM-----------PVMDGIEATKAMRAM--KVESKIVGVTSRNSETER 114 (145)
Q Consensus 50 g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~-----------~~~~g~~~~~~l~~~--~~~~~ii~lt~~~~~~~~ 114 (145)
+..+. ...+.+++....+. .+|.|.+...- .+...++.+..+++. ...+||+....-.+....
T Consensus 194 ~~pviv~~v~~~~~a~~a~~~--Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~ 271 (404)
T 1eep_A 194 NLDLIAGNIVTKEAALDLISV--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDV 271 (404)
T ss_dssp TCEEEEEEECSHHHHHHHHTT--TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHH
T ss_pred CCeEEEcCCCcHHHHHHHHhc--CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHH
Confidence 55554 56777777666654 48988873210 123355666666653 236888887788888999
Q ss_pred HHHHHhcccEEe
Q 045936 115 EVFMQAGLDLCY 126 (145)
Q Consensus 115 ~~~~~~g~~~~l 126 (145)
..++..||+.+.
T Consensus 272 ~~ala~GAd~V~ 283 (404)
T 1eep_A 272 VKAIAAGADSVM 283 (404)
T ss_dssp HHHHHHTCSEEE
T ss_pred HHHHHcCCCHHh
Confidence 999999999874
No 411
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=50.87 E-value=31 Score=22.30 Aligned_cols=95 Identities=9% Similarity=0.056 Sum_probs=51.8
Q ss_pred EEEEEeCC--HHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhhCCCCcEE
Q 045936 28 FALVVDDD--PMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAMKVESKIV 103 (145)
Q Consensus 28 ~vlii~~~--~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~~~~~~ii 103 (145)
+|.++..- ......+...|...|..+....+.+.....+..-.+=|++|+ ....+.. ..+.++..++. ++++|
T Consensus 47 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~-iS~sG~t~~~~~~~~~ak~~--g~~vi 123 (201)
T 3fxa_A 47 KIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILIL-ISKGGNTGELLNLIPACKTK--GSTLI 123 (201)
T ss_dssp CEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEE-ECSSSCCHHHHTTHHHHHHH--TCEEE
T ss_pred cEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEE-EeCCCCCHHHHHHHHHHHHc--CCeEE
Confidence 56666643 344455666777788888766654432222222123365554 3333332 34455555555 67899
Q ss_pred EEecCCChHHHHHHHHhcccEEeeCCC
Q 045936 104 GVTSRNSETEREVFMQAGLDLCYTKPL 130 (145)
Q Consensus 104 ~lt~~~~~~~~~~~~~~g~~~~l~kP~ 130 (145)
.+|+..+..... -++..+.-|.
T Consensus 124 ~IT~~~~s~l~~-----~ad~~l~~~~ 145 (201)
T 3fxa_A 124 GVTENPDSVIAK-----EADIFFPVSV 145 (201)
T ss_dssp EEESCTTSHHHH-----HCSEEEECCC
T ss_pred EEECCCCChhHH-----hCCEEEEcCC
Confidence 999876654332 2555554443
No 412
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=50.77 E-value=57 Score=22.29 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCeEEEecC---H---HHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 38 IRRIHSMILKSVGFKVEVAEN---G---KEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v~~~~~---~---~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
....+...+++.||.+..+.. . .+.++.+.. ..+|-+|+-...... .+.++.+.+ ++|+|++..
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~--~~~~~~l~~---~iPvV~i~~ 102 (303)
T 3kke_A 33 MFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSE-GRVDGVLLQRREDFD--DDMLAAVLE---GVPAVTINS 102 (303)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHS-CSSSEEEECCCTTCC--HHHHHHHHT---TSCEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh-CCCcEEEEecCCCCc--HHHHHHHhC---CCCEEEECC
Confidence 345566667777887654332 1 234555555 457766653222221 114455544 567766643
No 413
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=50.65 E-value=54 Score=22.06 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=8.9
Q ss_pred HHHHHHHHhcCCeEEE
Q 045936 40 RIHSMILKSVGFKVEV 55 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~~ 55 (145)
..+...+++.||.+..
T Consensus 33 ~gi~~~a~~~g~~~~~ 48 (292)
T 3k4h_A 33 RGISSFAHVEGYALYM 48 (292)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3445555666766553
No 414
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=50.48 E-value=59 Score=22.39 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=47.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc--CC---eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCC-----HHHHHHHHH
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV--GF---KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMD-----GIEATKAMR 94 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~--g~---~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~-----g~~~~~~l~ 94 (145)
..+|..+|-++...+..+..+... ++ ++. ...|+.+.+... ...+|+|++|...+... ..++++.++
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~ 176 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIA 176 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CSCEEEEEESCSSCCSCCCCCSTTHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCeeEEEECCCCCCCcchhhhHHHHHHHHH
Confidence 358999999999988888776431 21 232 456666554432 24699999997654321 246667666
Q ss_pred hh-CCCCcEEEEe
Q 045936 95 AM-KVESKIVGVT 106 (145)
Q Consensus 95 ~~-~~~~~ii~lt 106 (145)
+. .|+. ++++.
T Consensus 177 ~~L~pgG-~lv~~ 188 (275)
T 1iy9_A 177 KALKEDG-IFVAQ 188 (275)
T ss_dssp HHEEEEE-EEEEE
T ss_pred HhcCCCc-EEEEE
Confidence 54 3443 44443
No 415
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=50.43 E-value=51 Score=22.03 Aligned_cols=76 Identities=11% Similarity=0.104 Sum_probs=44.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-C---HHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-N---GKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVES 100 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~---~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~ 100 (145)
+..++|.+...-+-..+...|.+.|+.|..+. + .++..+.+ +. .+.++..++.+.+.+ ++++.+.+.+..+
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 87 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--GN--NCVFAPADVTSEKDVQTALALAKGKFGRV 87 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--CT--TEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh--CC--ceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence 45799999998898899888888899876443 2 22232222 12 333444444444333 3556665544444
Q ss_pred cEEEE
Q 045936 101 KIVGV 105 (145)
Q Consensus 101 ~ii~l 105 (145)
-+++-
T Consensus 88 d~li~ 92 (265)
T 2o23_A 88 DVAVN 92 (265)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 45544
No 416
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=50.35 E-value=71 Score=23.28 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCeE--EEecCHHHHHHHHhcCCCccEEEEeCC----CC-CCCHHHHHHHHHhhCC-CCcEEEEecCCCh
Q 045936 40 RIHSMILKSVGFKV--EVAENGKEAVDLFRTGAKFHIVFIDME----MP-VMDGIEATKAMRAMKV-ESKIVGVTSRNSE 111 (145)
Q Consensus 40 ~~l~~~l~~~g~~v--~~~~~~~~~l~~l~~~~~~dlil~d~~----~~-~~~g~~~~~~l~~~~~-~~~ii~lt~~~~~ 111 (145)
+.++.+-+..+..+ ..+.+.+++...... ..|.|.+.-+ +. +...++.+..+++.-+ .+||+.-.+-.+.
T Consensus 219 ~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~--Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g 296 (368)
T 2nli_A 219 RDIEEIAGHSGLPVFVKGIQHPEDADMAIKR--GASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRG 296 (368)
T ss_dssp HHHHHHHHHSSSCEEEEEECSHHHHHHHHHT--TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSH
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc--CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCH
Confidence 33444334345443 356788888777665 3888877431 11 2346778888876533 6889888888899
Q ss_pred HHHHHHHHhcccEEe-eCCC
Q 045936 112 TEREVFMQAGLDLCY-TKPL 130 (145)
Q Consensus 112 ~~~~~~~~~g~~~~l-~kP~ 130 (145)
.....++..||+.+. ..|+
T Consensus 297 ~D~~kalalGAd~V~iGr~~ 316 (368)
T 2nli_A 297 EHVAKALASGADVVALGRPV 316 (368)
T ss_dssp HHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHHHcCCCEEEECHHH
Confidence 999999999999974 4454
No 417
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=50.22 E-value=34 Score=20.34 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCC-----eE-EEecCHHH-HHHHHhcCCCccEEEEeCCCCCCCH---HHHHHHHHhhCCCCcEEEE
Q 045936 40 RIHSMILKSVGF-----KV-EVAENGKE-AVDLFRTGAKFHIVFIDMEMPVMDG---IEATKAMRAMKVESKIVGV 105 (145)
Q Consensus 40 ~~l~~~l~~~g~-----~v-~~~~~~~~-~l~~l~~~~~~dlil~d~~~~~~~g---~~~~~~l~~~~~~~~ii~l 105 (145)
..+..++...|. .. ....+..+ .++..++ ..+|+|++...-.+... -.....+-.. ..||++++
T Consensus 69 ~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~-~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~-~~~pVlvv 142 (143)
T 3fdx_A 69 TQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKS-LPADLVIIASHRPDITTYLLGSNAAAVVRH-AECSVLVV 142 (143)
T ss_dssp HHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHH-TTCSEEEEESSCTTCCSCSSCHHHHHHHHH-CSSEEEEE
T ss_pred HHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHH-hCCCEEEEeCCCCCCeeeeeccHHHHHHHh-CCCCEEEe
Confidence 334555555552 21 23345555 4445554 57999999987222111 1222333222 35888765
No 418
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=50.22 E-value=32 Score=22.18 Aligned_cols=29 Identities=10% Similarity=-0.082 Sum_probs=21.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEV 55 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~ 55 (145)
|+|+|.+-...+-..+...|...|+.|..
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~ 29 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTA 29 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEE
Confidence 46788887777777777777777877663
No 419
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=50.17 E-value=53 Score=21.75 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=48.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHHHHhcC---CCccEEEEeCCCCCCCHHHHHHHHHhh-CC
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVDLFRTG---AKFHIVFIDMEMPVMDGIEATKAMRAM-KV 98 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~~l~~~---~~~dlil~d~~~~~~~g~~~~~~l~~~-~~ 98 (145)
..++..+|-++......+..+...|+ .+. ...+..+.+..+... ..+|+|++|.. ..+-..+++.+... .|
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~Lkp 174 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD--KRNYPRYYEIGLNLLRR 174 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC--GGGHHHHHHHHHHTEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC--HHHHHHHHHHHHHHcCC
Confidence 35899999999998888888877665 243 556776666554321 36999999864 22334455555443 33
Q ss_pred CCcEEEE
Q 045936 99 ESKIVGV 105 (145)
Q Consensus 99 ~~~ii~l 105 (145)
+. ++++
T Consensus 175 gG-~lv~ 180 (232)
T 3cbg_A 175 GG-LMVI 180 (232)
T ss_dssp EE-EEEE
T ss_pred Ce-EEEE
Confidence 33 4444
No 420
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=50.11 E-value=54 Score=24.34 Aligned_cols=94 Identities=7% Similarity=0.024 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCCCC-----CHHHHHHHHHhhC--CCCcEEEEec
Q 045936 37 MIRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMPVM-----DGIEATKAMRAMK--VESKIVGVTS 107 (145)
Q Consensus 37 ~~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~~-----~g~~~~~~l~~~~--~~~~ii~lt~ 107 (145)
.........|+..|+.+. -+.++-..+..+.. -++|.|=+|-..-.. ....+++.+.... .++ -++.-+
T Consensus 157 ~~~~~~l~~Lr~~G~~ialDDFG~g~ssl~~L~~-l~~d~iKID~s~v~~~~~~~~~~~il~~ii~la~~lg~-~vvAEG 234 (431)
T 2bas_A 157 EQLYHMLAYYRTYGIKIAVDNIGKESSNLDRIAL-LSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKIGA-ALLYED 234 (431)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETTTBCCHHHHHH-HCCSEEEEECTTTC----CCHHHHHHHHHHHHHHHHTC-EEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCcHHHHHHHh-CCCCEEEECHHHHhhhhcCHhHHHHHHHHHHHHHHcCC-EEEEEe
Confidence 334445556778898865 45555555666665 579999999766422 1334455443321 123 345667
Q ss_pred CCChHHHHHHHHhcccE----EeeCCCCH
Q 045936 108 RNSETEREVFMQAGLDL----CYTKPLTM 132 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~----~l~kP~~~ 132 (145)
-.+.+....+.+.|++. |+.||...
T Consensus 235 VEt~~q~~~l~~lG~d~~QGy~f~~P~~~ 263 (431)
T 2bas_A 235 IEANFQLQYAWRNGGRYFQGYYLVSPSET 263 (431)
T ss_dssp CCSHHHHHHHHHTTEEEECSTTTCCCBSS
T ss_pred CCCHHHHHHHHHcCCCEEeeCCcCCCCCc
Confidence 77888888888999865 36777655
No 421
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=50.07 E-value=57 Score=22.15 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCC-C--HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe------eCC
Q 045936 59 GKEAVDLFRTGAKFHIVFIDMEMPVM-D--GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY------TKP 129 (145)
Q Consensus 59 ~~~~l~~l~~~~~~dlil~d~~~~~~-~--g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l------~kP 129 (145)
..+.+..+.....-.+++.|.+-.++ . -+++++.+.+..+++|+++-.+-.+.+....+ ..++++.+ ..-
T Consensus 153 ~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al~~g~ 231 (243)
T 4gj1_A 153 LMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENL-KGICSGVIVGKALLDGV 231 (243)
T ss_dssp HHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHHHHHHCTTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHHHTTS
T ss_pred HHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-HccCchhehHHHHHCCC
Confidence 45555555553445688888876653 2 35788888887778899887777777777654 45566654 345
Q ss_pred CCHHHHHHHH
Q 045936 130 LTMAKIVPLL 139 (145)
Q Consensus 130 ~~~~~l~~~l 139 (145)
++.++..+.+
T Consensus 232 i~l~ea~~~l 241 (243)
T 4gj1_A 232 FSVEEGIRCL 241 (243)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHh
Confidence 6666665544
No 422
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=49.98 E-value=31 Score=24.59 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEE
Q 045936 87 IEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLC 125 (145)
Q Consensus 87 ~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~ 125 (145)
++.++.+++.-+ .+||+....-.+.+....++..||+.+
T Consensus 276 ~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V 315 (336)
T 1f76_A 276 TEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLV 315 (336)
T ss_dssp HHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEE
Confidence 367777777543 799999999999999999999999886
No 423
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=49.97 E-value=67 Score=22.90 Aligned_cols=101 Identities=17% Similarity=0.076 Sum_probs=51.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhc-CCeEE-Eec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSV-GFKVE-VAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
++++|.|++--..-...+...|... +++++ .++ +.+.+-..... +.+-..+ +--+ .+. .+.+-
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~g~~~~~------~~~~---ll~--~~~~D 91 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER---FGGEPVE------GYPA---LLE--RDDVD 91 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH---HCSEEEE------SHHH---HHT--CTTCS
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH---cCCCCcC------CHHH---Hhc--CCCCC
Confidence 3579999998766553344444444 67765 333 33333333322 2211111 1111 121 12344
Q ss_pred EEEEecCC--ChHHHHHHHHhcccEEeeCCCC--HHHHHHHH
Q 045936 102 IVGVTSRN--SETEREVFMQAGLDLCYTKPLT--MAKIVPLL 139 (145)
Q Consensus 102 ii~lt~~~--~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~l 139 (145)
+++++.+. -.+....++++|..-++-||+. .++..+.+
T Consensus 92 ~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~ 133 (350)
T 3rc1_A 92 AVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLF 133 (350)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHH
Confidence 45554433 3345666788888888888874 34444443
No 424
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=49.94 E-value=26 Score=26.19 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=40.2
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCChHHHHHHHHhcccEEe------eC-CCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKV-ESKIVGVTSRNSETEREVFMQAGLDLCY------TK-PLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~-~~~ii~lt~~~~~~~~~~~~~~g~~~~l------~k-P~~~~~l~~~l~~~ 142 (145)
+++++.+++.-. .+|||...+-.+.+...+++..||+... .. |.-..++..-+++.
T Consensus 332 l~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~ 395 (415)
T 3i65_A 332 TKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHL 395 (415)
T ss_dssp HHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHH
Confidence 467788877643 6999999999999999999999998863 22 44444555544443
No 425
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=49.89 E-value=50 Score=23.37 Aligned_cols=95 Identities=14% Similarity=0.018 Sum_probs=51.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhc-CCeEE-Eec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSV-GFKVE-VAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESK 101 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ 101 (145)
..+||-|++--..-+......+... +++++ .++ +.+.+-+.... ....-+.-| --++ |. .+.+-
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~-~g~~~~y~d-------~~el---l~--~~~iD 88 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR-FSVPHAFGS-------YEEM---LA--SDVID 88 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH-HTCSEEESS-------HHHH---HH--CSSCS
T ss_pred CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH-cCCCeeeCC-------HHHH---hc--CCCCC
Confidence 4578999998766555555556554 56665 344 33333333332 111112211 1122 22 23444
Q ss_pred EEEEecCCC--hHHHHHHHHhcccEEeeCCCCH
Q 045936 102 IVGVTSRNS--ETEREVFMQAGLDLCYTKPLTM 132 (145)
Q Consensus 102 ii~lt~~~~--~~~~~~~~~~g~~~~l~kP~~~ 132 (145)
+++++.+.. .+....++++|..-|+-||+..
T Consensus 89 aV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~ 121 (350)
T 4had_A 89 AVYIPLPTSQHIEWSIKAADAGKHVVCEKPLAL 121 (350)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSCCCS
T ss_pred EEEEeCCCchhHHHHHHHHhcCCEEEEeCCccc
Confidence 555555443 3457778899998899999753
No 426
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=49.89 E-value=61 Score=22.37 Aligned_cols=73 Identities=18% Similarity=0.079 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH--HHHHHHHhhCCCCcEEEEecCCChHHHHHH
Q 045936 40 RIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI--EATKAMRAMKVESKIVGVTSRNSETEREVF 117 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~--~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~ 117 (145)
..+..+|+..|+.+. . ..+|+|++= +.||. ...+.+....+..|++-+..
T Consensus 18 ~~l~~~l~~~g~~v~-------------~-~~~D~vv~l----GGDGT~l~aa~~~~~~~~~~PilGIn~---------- 69 (272)
T 2i2c_A 18 LNMIAGFGEYDMEYD-------------D-VEPEIVISI----GGDGTFLSAFHQYEERLDEIAFIGIHT---------- 69 (272)
T ss_dssp HHHHHHHTTSSCEEC-------------S-SSCSEEEEE----ESHHHHHHHHHHTGGGTTTCEEEEEES----------
T ss_pred HHHHHHHHHCCCEeC-------------C-CCCCEEEEE----cCcHHHHHHHHHHhhcCCCCCEEEEeC----------
Confidence 445666777787661 2 358987752 56663 23333322223678887733
Q ss_pred HHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 118 MQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 118 ~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
|-.+|+. .+.++++..+++.+++
T Consensus 70 ---G~lgfl~-~~~~~~~~~~l~~l~~ 92 (272)
T 2i2c_A 70 ---GHLGFYA-DWRPAEADKLVKLLAK 92 (272)
T ss_dssp ---SSCCSSC-CBCGGGHHHHHHHHHT
T ss_pred ---CCCCcCC-cCCHHHHHHHHHHHHc
Confidence 3334443 4456666666666654
No 427
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=49.76 E-value=30 Score=24.18 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=29.0
Q ss_pred cccccCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhcCCeEEE
Q 045936 13 KARISENPVSKNRPYFALVVDDDPMIRRIHSMILKSVGFKVEV 55 (145)
Q Consensus 13 ~~~~~~~~~~~~~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~ 55 (145)
.......+.....+++|+|.+....+...+...|...|+.|..
T Consensus 7 ~~~~~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~ 49 (330)
T 2pzm_A 7 HHHHSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILV 49 (330)
T ss_dssp -------CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEE
T ss_pred ccccccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence 3444444555556679999999999999998888888888663
No 428
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=49.71 E-value=59 Score=25.80 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=34.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEe
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d 78 (145)
.+++|+|+|........+...+...|+.+........ ... ..+|.||+.
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~~~-~~~DgIIls 493 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----VDL-ARYDVVVMG 493 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----CCG-GGCSEEEEC
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----ccc-cCCCEEEEC
Confidence 4578999999988899999999999987654432211 111 247877773
No 429
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=49.66 E-value=56 Score=21.94 Aligned_cols=80 Identities=18% Similarity=0.044 Sum_probs=47.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe-cCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVA-ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~-~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii 103 (145)
+..++|.+...-+-..+...|.+.|+.|..+ .+.+.+-+.... ....+..+..++.+.+.. .+++.+.+.+..+-++
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l 86 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAE-IGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDIL 86 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4578999998888889988888889987744 454444333322 122344444444444433 3666666655455555
Q ss_pred EEe
Q 045936 104 GVT 106 (145)
Q Consensus 104 ~lt 106 (145)
+-.
T Consensus 87 v~~ 89 (259)
T 4e6p_A 87 VNN 89 (259)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 430
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=49.66 E-value=43 Score=20.63 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=51.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC-eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF-KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~-~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
..++..+|-++......+..+...|. .+. ...+..+ .+.. ..+|+|+++.. .+-.++++.+++. ++..++
T Consensus 57 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~-~~~D~i~~~~~---~~~~~~l~~~~~~-~gG~l~ 128 (183)
T 2yxd_A 57 CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDK-LEFNKAFIGGT---KNIEKIIEILDKK-KINHIV 128 (183)
T ss_dssp SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGG-CCCSEEEECSC---SCHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccC-CCCcEEEECCc---ccHHHHHHHHhhC-CCCEEE
Confidence 45899999999999988888887764 233 4556555 3343 46999998765 5566788888777 666555
Q ss_pred EEe
Q 045936 104 GVT 106 (145)
Q Consensus 104 ~lt 106 (145)
+.+
T Consensus 129 ~~~ 131 (183)
T 2yxd_A 129 ANT 131 (183)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
No 431
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=49.37 E-value=56 Score=21.79 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=38.5
Q ss_pred CHHHHHHHHhcCCCccEE---EEeCCC-CC-CCHHHHHHHHHhhCCCCcEE--EEecCCChHHHHHHHHhcccEEeeC
Q 045936 58 NGKEAVDLFRTGAKFHIV---FIDMEM-PV-MDGIEATKAMRAMKVESKIV--GVTSRNSETEREVFMQAGLDLCYTK 128 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dli---l~d~~~-~~-~~g~~~~~~l~~~~~~~~ii--~lt~~~~~~~~~~~~~~g~~~~l~k 128 (145)
+..+.++.+.+ ...|.+ ++|-.. +. ..|.+.++.|++.. ..++. +++. +.......+.+.|++.+...
T Consensus 20 ~l~~~i~~~~~-~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~-~~~~~v~lmv~-d~~~~i~~~~~agad~v~vH 94 (228)
T 1h1y_A 20 NLAAEADRMVR-LGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHT-KAYLDCHLMVT-NPSDYVEPLAKAGASGFTFH 94 (228)
T ss_dssp GHHHHHHHHHH-TTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTC-CSEEEEEEESS-CGGGGHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHH-cCCCEEEEEEecCCcCcchhhCHHHHHHHHhhc-CCcEEEEEEec-CHHHHHHHHHHcCCCEEEEC
Confidence 44555555544 235543 444322 22 23678888888764 23332 4553 34456778888999987544
No 432
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=49.16 E-value=77 Score=23.35 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=53.6
Q ss_pred EecCHHHHHHHHhcCCCccEEEEeCCC-----CCCCHHHHHHHHHhh-CCCCcEEEEecCCChHHHHHHHHhcccEE-ee
Q 045936 55 VAENGKEAVDLFRTGAKFHIVFIDMEM-----PVMDGIEATKAMRAM-KVESKIVGVTSRNSETEREVFMQAGLDLC-YT 127 (145)
Q Consensus 55 ~~~~~~~~l~~l~~~~~~dlil~d~~~-----~~~~g~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~~~~~g~~~~-l~ 127 (145)
.+.+.+++...... .+|.|.+.-+- .+...++.+..+++. ...+||+.-..-.+......++..||+.+ +.
T Consensus 259 gv~~~e~A~~a~~a--Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iG 336 (392)
T 2nzl_A 259 GILRGDDAREAVKH--GLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVG 336 (392)
T ss_dssp EECCHHHHHHHHHT--TCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ecCCHHHHHHHHHc--CCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEEC
Confidence 56788888777665 38988874321 123466777777765 33688888888889999999999999987 44
Q ss_pred CCCCH
Q 045936 128 KPLTM 132 (145)
Q Consensus 128 kP~~~ 132 (145)
+|+-.
T Consensus 337 r~~l~ 341 (392)
T 2nzl_A 337 RPIVW 341 (392)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45533
No 433
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=49.05 E-value=60 Score=22.05 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=53.2
Q ss_pred HHHHhcCCe--EEEecCHHHHHHHHhcCCCccEE--E----EeCCCCCCCHHHHHHHHHhh----CCCCcEEEEecCCCh
Q 045936 44 MILKSVGFK--VEVAENGKEAVDLFRTGAKFHIV--F----IDMEMPVMDGIEATKAMRAM----KVESKIVGVTSRNSE 111 (145)
Q Consensus 44 ~~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dli--l----~d~~~~~~~g~~~~~~l~~~----~~~~~ii~lt~~~~~ 111 (145)
..|+..|.. ++.+-+..+++.....+ .+.| + -|+ +.+|.++++.+.+. ...+ .|+.++..+.
T Consensus 98 ~~L~~~GI~vn~TlifS~~QA~~Aa~AG--a~yISPfvgRi~d~---g~dG~~~v~~i~~~~~~~~~~T-~IlaAS~Rn~ 171 (223)
T 3s1x_A 98 KTLSSEHINTNCTLVFNPIQALLAAKAG--VTYVSPFVGRLDDI---GEDGMQIIDMIRTIFNNYIIKT-QILVASIRNP 171 (223)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHHHHHTT--CSEEEEBSHHHHHT---TSCTHHHHHHHHHHHHHTTCCS-EEEEBSCCSH
T ss_pred HHHHHCCCcEEEEEeCCHHHHHHHHHcC--CeEEEeecchHhhc---CCCHHHHHHHHHHHHHHcCCCC-EEEEEeCCCH
Confidence 345666865 55777888988877763 4444 2 233 45777777777663 2334 3556778888
Q ss_pred HHHHHHHHhcccEEeeCC
Q 045936 112 TEREVFMQAGLDLCYTKP 129 (145)
Q Consensus 112 ~~~~~~~~~g~~~~l~kP 129 (145)
.....+...|++..-..|
T Consensus 172 ~~v~~aa~~G~d~~Tip~ 189 (223)
T 3s1x_A 172 IHVLRSAVIGADVVTVPF 189 (223)
T ss_dssp HHHHHHHHHTCSEEEECH
T ss_pred HHHHHHHHcCCCEEEeCH
Confidence 889899999999865433
No 434
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=49.01 E-value=47 Score=21.64 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=31.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~ 79 (145)
.+|..+|-++......+..+...|..+. ...+... +..+.. ..+|+|+++.
T Consensus 80 ~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~-~~~~~~-~~fD~I~~np 131 (230)
T 3evz_A 80 CKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGI-IKGVVE-GTFDVIFSAP 131 (230)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCS-STTTCC-SCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchh-hhhccc-CceeEEEECC
Confidence 4788899988888888888877774332 2223211 111222 4699999873
No 435
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=48.99 E-value=55 Score=21.63 Aligned_cols=82 Identities=11% Similarity=0.034 Sum_probs=48.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEE-ecCHHHH---HHHHhcCC--CccEEEEeCCCCCCCHH-HHHHHHHhhC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEV-AENGKEA---VDLFRTGA--KFHIVFIDMEMPVMDGI-EATKAMRAMK 97 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~-~~~~~~~---l~~l~~~~--~~dlil~d~~~~~~~g~-~~~~~l~~~~ 97 (145)
.+..++|.+...-+-..+...|.+.|+.|.. ..+.+.+ .+.+.... ...++.+|.+..+.+.. .+++.+.+.+
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~ 92 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEF 92 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhC
Confidence 3457899999888888998888888998764 4443332 22333211 23455555544444433 4566666554
Q ss_pred CCCcEEEEe
Q 045936 98 VESKIVGVT 106 (145)
Q Consensus 98 ~~~~ii~lt 106 (145)
..+-+++-.
T Consensus 93 g~id~lv~n 101 (247)
T 3i1j_A 93 GRLDGLLHN 101 (247)
T ss_dssp SCCSEEEEC
T ss_pred CCCCEEEEC
Confidence 445555543
No 436
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=48.96 E-value=45 Score=20.58 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=45.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe--EEEecCHHHHHHHHhcC-CCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCc
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK--VEVAENGKEAVDLFRTG-AKFHIVFIDMEMPVMDGIEATKAMRAM-KVESK 101 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~--v~~~~~~~~~l~~l~~~-~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ 101 (145)
..+|..+|-++......+..+...|.. +....+..+. +... ..+|+|+++..+.. ..+++.+.+. .|...
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L~~gG~ 122 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA---FDDVPDNPDVIFIGGGLTA---PGVFAAAWKRLPVGGR 122 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGG---GGGCCSCCSEEEECC-TTC---TTHHHHHHHTCCTTCE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhh---hhccCCCCCEEEECCcccH---HHHHHHHHHhcCCCCE
Confidence 468999999999888888888777653 4333343332 2221 46999998876655 3455555553 45554
Q ss_pred EEE
Q 045936 102 IVG 104 (145)
Q Consensus 102 ii~ 104 (145)
+++
T Consensus 123 l~~ 125 (178)
T 3hm2_A 123 LVA 125 (178)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 437
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=48.76 E-value=56 Score=23.84 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=25.3
Q ss_pred hHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 111 ETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 111 ~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+....++++|..-++-||++.++..+.++..
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A 115 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLA 115 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHH
Confidence 45677889999999999999988877666543
No 438
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=48.74 E-value=69 Score=22.70 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCCCCcEEE--EecCCChHHHHHHHHhcccEEe-----eCCCCHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVESKIVG--VTSRNSETEREVFMQAGLDLCY-----TKPLTMAKIVPLLEE 141 (145)
Q Consensus 87 ~~~~~~l~~~~~~~~ii~--lt~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~l~~ 141 (145)
+++++.+++.. ..|+++ -++-.+++....++..|++.++ .+.-++......+..
T Consensus 196 ~~ll~~i~~~~-~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ 256 (297)
T 4adt_A 196 IDLILLTRKLK-RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVM 256 (297)
T ss_dssp HHHHHHHHHHT-SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHH
Confidence 56667776653 356653 3444478888899999999986 344455554444433
No 439
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=48.29 E-value=50 Score=20.93 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=38.0
Q ss_pred CccEEEEeC-CCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFIDM-EMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d~-~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+.++++|- +.-.....+ +.+.+......+.+|+.++.. .. ....+...+..+-..|++.+++...+++..
T Consensus 102 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~-~~-~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~ 174 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV-SR-IIEPIQSRCAVFRFKPVPKEAMKKRLLEIC 174 (226)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG-GG-SCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh-hh-cCHHHHHhCceeecCCCCHHHHHHHHHHHH
Confidence 467888883 222222233 334444433445555554432 22 223334444566677999999888887654
No 440
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=48.26 E-value=63 Score=22.10 Aligned_cols=80 Identities=14% Similarity=0.073 Sum_probs=47.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEe-cCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVA-ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~-~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii 103 (145)
+..++|.+...-+-..+...|.+.|+.|..+ .+.+.+.+.... ....+..+..++.+.+.. .+++.+.+.+..+-++
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 105 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE-IGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVL 105 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-HCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4478899998889999999888889987744 444433333322 122344444444444433 3566665554445555
Q ss_pred EEe
Q 045936 104 GVT 106 (145)
Q Consensus 104 ~lt 106 (145)
+-.
T Consensus 106 v~n 108 (277)
T 4dqx_A 106 VNN 108 (277)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 441
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=48.21 E-value=74 Score=22.87 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=57.2
Q ss_pred cEEEEEeCC---HHHHHHHHHHHHhcCC--eEEE--ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCC
Q 045936 27 YFALVVDDD---PMIRRIHSMILKSVGF--KVEV--AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVE 99 (145)
Q Consensus 27 ~~vlii~~~---~~~~~~l~~~l~~~g~--~v~~--~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~ 99 (145)
.+++++++. ......++...+..|. .|.. .-+.++....+.. .|++++-.... .-|..+++.+. ..
T Consensus 277 ~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~---adv~v~ps~~e-~~~~~~~Eama---~G 349 (438)
T 3c48_A 277 LRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA---ADIVAVPSFNE-SFGLVAMEAQA---SG 349 (438)
T ss_dssp EEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH---CSEEEECCSCC-SSCHHHHHHHH---TT
T ss_pred eEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh---CCEEEECcccc-CCchHHHHHHH---cC
Confidence 455556551 1233445555554442 1322 2233555555543 47766644322 23444555443 35
Q ss_pred CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 100 SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
+|+|+. ... .....+..|..+++..|.+.+++..+|.++++
T Consensus 350 ~PvI~~-~~~---~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 350 TPVIAA-RVG---GLPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp CCEEEE-SCT---THHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEec-CCC---ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 676654 322 23344556778899999999999999988764
No 442
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=48.18 E-value=31 Score=21.18 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=56.9
Q ss_pred CCcEEEEEeCC---HHHHHHHHHHHHhcCCeEEEecCHHHHHH------HHhc-CCCccEEEEeCCCCCCCHHHHHHHHH
Q 045936 25 RPYFALVVDDD---PMIRRIHSMILKSVGFKVEVAENGKEAVD------LFRT-GAKFHIVFIDMEMPVMDGIEATKAMR 94 (145)
Q Consensus 25 ~~~~vlii~~~---~~~~~~l~~~l~~~g~~v~~~~~~~~~l~------~l~~-~~~~dlil~d~~~~~~~g~~~~~~l~ 94 (145)
.+.+|.+++-. ......+...|...||+++.++...+.+. .+.+ ...+|++++-. |.....++++.+.
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~v--p~~~v~~v~~~~~ 90 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVV--PPKVGLQVAKEAV 90 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECS--CHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEe--CHHHHHHHHHHHH
Confidence 45578888862 23344555556678998776553322111 0111 12478888744 4444556666655
Q ss_pred hhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHH
Q 045936 95 AMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAK 134 (145)
Q Consensus 95 ~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 134 (145)
+.... .+++.++....+....+.+.|+. ++ -|-...-
T Consensus 91 ~~g~~-~i~~~~~~~~~~l~~~a~~~Gi~-~i-gpnc~g~ 127 (138)
T 1y81_A 91 EAGFK-KLWFQPGAESEEIRRFLEKAGVE-YS-FGRCIMV 127 (138)
T ss_dssp HTTCC-EEEECTTSCCHHHHHHHHHHTCE-EE-CSCCHHH
T ss_pred HcCCC-EEEEcCccHHHHHHHHHHHCCCE-EE-cCCcceE
Confidence 54432 25555666666667777777764 33 3544433
No 443
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=48.10 E-value=61 Score=21.90 Aligned_cols=116 Identities=13% Similarity=0.061 Sum_probs=67.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCC--eEEEe-cCHHHHHHHHhc---CCCccEEEEe----------CCCC----CCCHH
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGF--KVEVA-ENGKEAVDLFRT---GAKFHIVFID----------MEMP----VMDGI 87 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~--~v~~~-~~~~~~l~~l~~---~~~~dlil~d----------~~~~----~~~g~ 87 (145)
+++++-..+.+....+....+.+. .+..+ .+.++++...+. ...+|+||.- .+.| ..+|+
T Consensus 14 ~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISRGgta~~Lr~~~~iPVV~I~vs~~ 93 (225)
T 2pju_A 14 PVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGY 93 (225)
T ss_dssp CEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEECCCHH
T ss_pred CEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeCChHHHHHHhhCCCCEEEecCCHH
Confidence 577777778888888888876653 33332 567777765433 1237888732 1223 45788
Q ss_pred HHHHHHHhhCC-CCcEEEEecCCChHHHH-HHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 88 EATKAMRAMKV-ESKIVGVTSRNSETERE-VFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 88 ~~~~~l~~~~~-~~~ii~lt~~~~~~~~~-~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
++++.|..... ..+|-+++-........ -.--.|.+-......+.+++...++++.
T Consensus 94 Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~ 151 (225)
T 2pju_A 94 DVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELK 151 (225)
T ss_dssp HHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHH
Confidence 88888877533 34555554433322222 2233455544444566788888887764
No 444
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=48.08 E-value=60 Score=21.79 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=40.8
Q ss_pred CcEEEEEeCCH------HHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 045936 26 PYFALVVDDDP------MIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA 95 (145)
Q Consensus 26 ~~~vlii~~~~------~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~ 95 (145)
..+|++++-.. .....+...|+..|+.+......++..+.+.+ .|.|++ |+.+...+.+.|++
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~---ad~I~l----pGG~~~~~~~~l~~ 99 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK---AEIIIV----GGGNTFQLLKESRE 99 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH---CSEEEE----CCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc---CCEEEE----CCCcHHHHHHHHHH
Confidence 35788887542 55677788889999988776432233344443 577775 56777666666665
No 445
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=47.94 E-value=87 Score=23.61 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=52.4
Q ss_pred CCcEEEEEeC----CHHHHHHHHHHHHh-cCCeEE-EecCHHH-HHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC
Q 045936 25 RPYFALVVDD----DPMIRRIHSMILKS-VGFKVE-VAENGKE-AVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK 97 (145)
Q Consensus 25 ~~~~vlii~~----~~~~~~~l~~~l~~-~g~~v~-~~~~~~~-~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~ 97 (145)
.+++|.|++- -..-...+..+... .+++++ .++...+ +-........+.+-..+ +--++ +. .
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~------d~~el---l~--~ 106 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFD------SLESF---AQ--Y 106 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEES------CHHHH---HH--C
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeC------CHHHH---hc--C
Confidence 4679999998 44333334443333 467765 4443333 33333321111111111 11122 22 2
Q ss_pred CCCcEEEEecCC--ChHHHHHHHHhc------ccEEeeCCCC--HHHHHHHHH
Q 045936 98 VESKIVGVTSRN--SETEREVFMQAG------LDLCYTKPLT--MAKIVPLLE 140 (145)
Q Consensus 98 ~~~~ii~lt~~~--~~~~~~~~~~~g------~~~~l~kP~~--~~~l~~~l~ 140 (145)
+.+-+|+++.+. -.+....++++| ..-|+-||+. .++..+.++
T Consensus 107 ~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~ 159 (479)
T 2nvw_A 107 KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYS 159 (479)
T ss_dssp TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHH
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHH
Confidence 344556565543 234566688999 7788899965 455554444
No 446
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=47.89 E-value=62 Score=21.92 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=48.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-C------------HHHH---HHHHhcCCCccEEEEeCCCCCCCHH-
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-N------------GKEA---VDLFRTGAKFHIVFIDMEMPVMDGI- 87 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~------------~~~~---l~~l~~~~~~dlil~d~~~~~~~g~- 87 (145)
.+..++|-+-..-+-..+...|.+.|+.|..+. + .+.. ...+.. ....+..+..++.+.+..
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~ 90 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVED-IGSRIVARQADVRDRESLS 90 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH-HTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHH
Confidence 345789999988888899888888899877442 1 3322 222222 123455555555554444
Q ss_pred HHHHHHHhhCCCCcEEEEe
Q 045936 88 EATKAMRAMKVESKIVGVT 106 (145)
Q Consensus 88 ~~~~~l~~~~~~~~ii~lt 106 (145)
.+++.+.+.+..+-+++-.
T Consensus 91 ~~~~~~~~~~g~id~lv~n 109 (278)
T 3sx2_A 91 AALQAGLDELGRLDIVVAN 109 (278)
T ss_dssp HHHHHHHHHHCCCCEEEEC
T ss_pred HHHHHHHHHcCCCCEEEEC
Confidence 3666666554445555443
No 447
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=47.70 E-value=58 Score=21.56 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=45.9
Q ss_pred ecCHHHHHHHHhcCCCcc-EEEEeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 56 AENGKEAVDLFRTGAKFH-IVFIDMEMPVM---DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 56 ~~~~~~~l~~l~~~~~~d-lil~d~~~~~~---~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
..+..+..+.+.. ...| +.+.|...... ...+.++.+++.. ..|+++-....+.+....++..|++.+.
T Consensus 32 ~~~~~~~a~~~~~-~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~ 104 (253)
T 1h5y_A 32 VGDPVEMAVRYEE-EGADEIAILDITAAPEGRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVS 104 (253)
T ss_dssp EECHHHHHHHHHH-TTCSCEEEEECCCCTTTHHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred cccHHHHHHHHHH-cCCCEEEEEeCCccccCCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 3466666666665 3467 44555443222 2356777777654 6888877777788888889999998876
No 448
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=47.67 E-value=87 Score=23.52 Aligned_cols=74 Identities=9% Similarity=-0.006 Sum_probs=32.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHHH--HHHHHHhhCCCCcE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIE--ATKAMRAMKVESKI 102 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~--~~~~l~~~~~~~~i 102 (145)
+..|.++|.++.....+.. ..++.+...+ +..+.++...- ...|+++.=+. .+..+ .+...++.++...+
T Consensus 26 ~~~v~vId~d~~~~~~~~~---~~~~~~i~Gd~~~~~~L~~Agi-~~ad~~ia~t~---~De~Nl~~~~~Ak~~~~~~~~ 98 (461)
T 4g65_A 26 NNDITIVDKDGDRLRELQD---KYDLRVVNGHASHPDVLHEAGA-QDADMLVAVTN---TDETNMAACQVAFTLFNTPNR 98 (461)
T ss_dssp TEEEEEEESCHHHHHHHHH---HSSCEEEESCTTCHHHHHHHTT-TTCSEEEECCS---CHHHHHHHHHHHHHHHCCSSE
T ss_pred CCCEEEEECCHHHHHHHHH---hcCcEEEEEcCCCHHHHHhcCC-CcCCEEEEEcC---ChHHHHHHHHHHHHhcCCccc
Confidence 3456667766655444332 2344443211 22333343332 34676664322 22222 33333444555555
Q ss_pred EEEe
Q 045936 103 VGVT 106 (145)
Q Consensus 103 i~lt 106 (145)
+.-.
T Consensus 99 iar~ 102 (461)
T 4g65_A 99 IARI 102 (461)
T ss_dssp EEEC
T ss_pred eeEe
Confidence 5443
No 449
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=47.66 E-value=73 Score=22.65 Aligned_cols=85 Identities=9% Similarity=-0.035 Sum_probs=49.6
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhcCCeEEE---ec----CHHHHHHH--HhcCCCccEEEEeCCCCCCCHHHHHHHH
Q 045936 28 FALVVD--DDPMI---RRIHSMILKSVGFKVEV---AE----NGKEAVDL--FRTGAKFHIVFIDMEMPVMDGIEATKAM 93 (145)
Q Consensus 28 ~vlii~--~~~~~---~~~l~~~l~~~g~~v~~---~~----~~~~~l~~--l~~~~~~dlil~d~~~~~~~g~~~~~~l 93 (145)
+|.++. ++..- ...++..++..|..+.. +. +....+.. +.. ..||+|++... ......+++.+
T Consensus 143 ~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~-~~~dav~~~~~--~~~~~~~~~~~ 219 (391)
T 3eaf_A 143 KLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLA-ADPDYVWCGNT--ISSCSLLGRAM 219 (391)
T ss_dssp EEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHT-TCCSEEEECSC--HHHHHHHHHHH
T ss_pred EEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHH-cCCCEEEEecC--cHHHHHHHHHH
Confidence 565554 44433 34556666777866542 22 44456666 665 56999988542 23456677888
Q ss_pred HhhCCCCcEEEEecCCChHHHH
Q 045936 94 RAMKVESKIVGVTSRNSETERE 115 (145)
Q Consensus 94 ~~~~~~~~ii~lt~~~~~~~~~ 115 (145)
++.....|++......++....
T Consensus 220 ~~~g~~~~~~~~~~~~~~~~~~ 241 (391)
T 3eaf_A 220 AKVGLDAFLLTNVWGFDERSPQ 241 (391)
T ss_dssp HHHTCCCEEEECGGGCSTTHHH
T ss_pred HHCCCCceEEEeccCCCHHHHH
Confidence 8877777775443333444443
No 450
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=47.48 E-value=51 Score=20.85 Aligned_cols=83 Identities=11% Similarity=0.059 Sum_probs=49.8
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhcCCeEEEec-CHHHHHHHHhcCCCccEEEEeCCCCCCC--HHHHHHHHHhhCCCCcE
Q 045936 28 FALVVDD--DPMIRRIHSMILKSVGFKVEVAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMD--GIEATKAMRAMKVESKI 102 (145)
Q Consensus 28 ~vlii~~--~~~~~~~l~~~l~~~g~~v~~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~--g~~~~~~l~~~~~~~~i 102 (145)
+|.+++. .......+...|...|..+.... +..+....+..-.+=|++|+ ....+.. ..+.++..++. ++++
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~-iS~sG~t~~~~~~~~~ak~~--g~~v 117 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIG-VSVWRYLRDTVAALAGAAER--GVPT 117 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEE-ECCSSCCHHHHHHHHHHHHT--TCCE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEE-EeCCCCCHHHHHHHHHHHHC--CCCE
Confidence 6666664 44455667777888898887776 55555444443233455544 3444443 34555555554 6899
Q ss_pred EEEecCCChHH
Q 045936 103 VGVTSRNSETE 113 (145)
Q Consensus 103 i~lt~~~~~~~ 113 (145)
+.+|+..+...
T Consensus 118 i~IT~~~~s~l 128 (187)
T 3sho_A 118 MALTDSSVSPP 128 (187)
T ss_dssp EEEESCTTSHH
T ss_pred EEEeCCCCCcc
Confidence 99998765543
No 451
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=47.39 E-value=60 Score=21.63 Aligned_cols=80 Identities=8% Similarity=-0.008 Sum_probs=46.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIVGV 105 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii~l 105 (145)
..++|.+...-+-..+...|.+.|+.|..+....+....+.. ....+..+..++.+.+.. ++++.+.+.+..+-+++-
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~ 81 (247)
T 3dii_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK-ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN 81 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT-TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hcccCCeEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 368888888888888888888889987754433333333333 223333444444444333 466666655444555554
Q ss_pred ec
Q 045936 106 TS 107 (145)
Q Consensus 106 t~ 107 (145)
..
T Consensus 82 nA 83 (247)
T 3dii_A 82 NA 83 (247)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 452
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=47.35 E-value=57 Score=21.38 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=48.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCC--eEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCc
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGF--KVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVESK 101 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ 101 (145)
..+|..+|-++......+..+...|. .+. ...+..+.+........+|+|+++.... +-..+++.+.+. .|+.
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~--~~~~~l~~~~~~L~pgG- 154 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKG--QYRRFFDMYSPMVRPGG- 154 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS--CHHHHHHHHGGGEEEEE-
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECCCHH--HHHHHHHHHHHHcCCCe-
Confidence 35799999999999988888887764 243 3445554444332114699999987543 334556666543 3433
Q ss_pred EEEEe
Q 045936 102 IVGVT 106 (145)
Q Consensus 102 ii~lt 106 (145)
++++.
T Consensus 155 ~lv~~ 159 (233)
T 2gpy_A 155 LILSD 159 (233)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
No 453
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=47.28 E-value=86 Score=23.40 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=30.6
Q ss_pred cEEEEEeCCHHHH---HHHHHHHHhcCCeEEEec---CH----HHHHHHHhcCCCccEEEEeC
Q 045936 27 YFALVVDDDPMIR---RIHSMILKSVGFKVEVAE---NG----KEAVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 27 ~~vlii~~~~~~~---~~l~~~l~~~g~~v~~~~---~~----~~~l~~l~~~~~~dlil~d~ 79 (145)
.+|++++.+.... ..+..+-...|+.+.... +. .+++..++. ..+|+||+|.
T Consensus 127 ~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~-~~~DvVIIDT 188 (425)
T 2ffh_A 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL-EARDLILVDT 188 (425)
T ss_dssp CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH-TTCSEEEEEC
T ss_pred CeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH-CCCCEEEEcC
Confidence 4788888774332 234444445577766543 22 334455543 4699999996
No 454
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=47.28 E-value=30 Score=22.64 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=31.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEE
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFI 77 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~ 77 (145)
+|+|+|=.......+...|++.|+.+...++.++. . .+|.+|+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~---~~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----L---AADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----H---HCSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----h---CCCEEEE
Confidence 68999865555567888899999998888886653 2 2577776
No 455
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=47.01 E-value=65 Score=21.93 Aligned_cols=81 Identities=9% Similarity=-0.050 Sum_probs=46.5
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHHhcCCeEEEecCH--HHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCC
Q 045936 26 PYFALVVDDD--PMIRRIHSMILKSVGFKVEVAENG--KEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVES 100 (145)
Q Consensus 26 ~~~vlii~~~--~~~~~~l~~~l~~~g~~v~~~~~~--~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~ 100 (145)
+..++|.+-. .-+-..+...|.+.|+.|..+... .+.++.+.. ....+.++..++.+.+.+ .+++.+.+.+...
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 104 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCA-EFNPAAVLPCDVISDQEIKDLFVELGKVWDGL 104 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHG-GGCCSEEEECCTTCHHHHHHHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHH-hcCCceEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence 3468888855 447777878887889887644322 355555543 223344444444444433 4666776665555
Q ss_pred cEEEEec
Q 045936 101 KIVGVTS 107 (145)
Q Consensus 101 ~ii~lt~ 107 (145)
-+++-..
T Consensus 105 d~li~nA 111 (280)
T 3nrc_A 105 DAIVHSI 111 (280)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 5555533
No 456
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=46.99 E-value=60 Score=21.72 Aligned_cols=80 Identities=8% Similarity=-0.063 Sum_probs=42.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec-CHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAE-NGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~-~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii 103 (145)
+..++|.+...-+-..+...|.+.|+.|..+. +.+.+-..... ....+.++..++.+.+.. .+++.+.+.+..+-++
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 85 (257)
T 3tpc_A 7 SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE-LGAAVRFRNADVTNEADATAALAFAKQEFGHVHGL 85 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-hCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 44788999988888899998888898876443 22222111111 112333333344444333 4666666554445555
Q ss_pred EEe
Q 045936 104 GVT 106 (145)
Q Consensus 104 ~lt 106 (145)
+-.
T Consensus 86 v~n 88 (257)
T 3tpc_A 86 VNC 88 (257)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 457
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=46.43 E-value=76 Score=22.48 Aligned_cols=89 Identities=10% Similarity=0.109 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhc-CCeEEE------ecCHHHHHHHHhcCCCccEEEEeCCCC-CCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 37 MIRRIHSMILKSV-GFKVEV------AENGKEAVDLFRTGAKFHIVFIDMEMP-VMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 37 ~~~~~l~~~l~~~-g~~v~~------~~~~~~~l~~l~~~~~~dlil~d~~~~-~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
.....++.++... +..++. +.+..++++.+.. -.++-||..-..+ ..+|++.++.+.+....-..|+..+.
T Consensus 139 iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~-lGvdrILTSG~~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGG 217 (287)
T 3iwp_A 139 IDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLT-LGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPGGG 217 (287)
T ss_dssp BCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHH-HTCSEEEECTTSSSTTTTHHHHHHHHHHHTTSSEEEECTT
T ss_pred cCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHH-cCCCEEECCCCCCChHHhHHHHHHHHHHhCCCCEEEECCC
Confidence 3444555555443 344442 3467888888776 3589999875443 35789988888765332223444455
Q ss_pred CChHHHHHHHH-hcccEEe
Q 045936 109 NSETEREVFMQ-AGLDLCY 126 (145)
Q Consensus 109 ~~~~~~~~~~~-~g~~~~l 126 (145)
-..+.+....+ .|++.|.
T Consensus 218 V~~~Ni~~l~~~tG~~~~H 236 (287)
T 3iwp_A 218 ITDRNLQRILEGSGATEFH 236 (287)
T ss_dssp CCTTTHHHHHHHHCCSEEE
T ss_pred cCHHHHHHHHHhhCCCEEe
Confidence 56666666554 8888874
No 458
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=46.21 E-value=67 Score=21.81 Aligned_cols=66 Identities=3% Similarity=-0.014 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCeEEEec-----CHH---HHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecC
Q 045936 39 RRIHSMILKSVGFKVEVAE-----NGK---EAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTSR 108 (145)
Q Consensus 39 ~~~l~~~l~~~g~~v~~~~-----~~~---~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~~ 108 (145)
...++..+++.||.+..+. +.+ +.++.+.. ..+|.||+...... .....++.+++. ++|++.+...
T Consensus 22 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~-~~~~~~~~~~~~--giPvV~~~~~ 95 (297)
T 3rot_A 22 FQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA-TYPSGIATTIPSDT-AFSKSLQRANKL--NIPVIAVDTR 95 (297)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH-TCCSEEEECCCCSS-TTHHHHHHHHHH--TCCEEEESCC
T ss_pred HHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH-cCCCEEEEeCCCHH-HHHHHHHHHHHC--CCCEEEEcCC
Confidence 3455667777899876544 333 34444444 45897776432221 123455666554 5677777443
No 459
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=46.12 E-value=92 Score=23.40 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCccEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEee
Q 045936 60 KEAVDLFRTGAKFHIVFIDMEMPVMD-GIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYT 127 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil~d~~~~~~~-g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~ 127 (145)
+.+...+.. ..|.++++....... .++.++.++...|..|++ .......+....+.+.|++....
T Consensus 236 ~~a~~l~~~--G~d~ivi~~a~g~~~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~~Gad~I~v 301 (491)
T 1zfj_A 236 ERAEALFEA--GADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVKV 301 (491)
T ss_dssp HHHHHHHHH--TCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHc--CCCeEEEeeecCcchhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHHcCCCEEEE
Confidence 445444444 489999987433222 356778888877778877 55666778888899999998643
No 460
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=46.05 E-value=79 Score=22.60 Aligned_cols=103 Identities=11% Similarity=0.045 Sum_probs=53.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhc-CCeEE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSV-GFKVE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~-g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
+++|.|++--..-...+...+... +++++ .++...+..+.+.. .....-.. .+--+++ .. +.+-++
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~-~~~~~~~~------~~~~~ll---~~--~~vD~V 72 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR-FISDIPVL------DNVPAML---NQ--VPLDAV 72 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG-TSCSCCEE------SSHHHHH---HH--SCCSEE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-hcCCCccc------CCHHHHh---cC--CCCCEE
Confidence 578999998876554344444444 67765 44433443333333 11111111 1222222 22 233445
Q ss_pred EEecCC--ChHHHHHHHHhcccEEeeCCCC--HHHHHHHHH
Q 045936 104 GVTSRN--SETEREVFMQAGLDLCYTKPLT--MAKIVPLLE 140 (145)
Q Consensus 104 ~lt~~~--~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~l~ 140 (145)
+++.+. -.+....++++|..-|+-||+. .++..+.++
T Consensus 73 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~ 113 (359)
T 3m2t_A 73 VMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLID 113 (359)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHH
Confidence 554433 3345667889999989999964 445554443
No 461
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=45.89 E-value=63 Score=21.41 Aligned_cols=79 Identities=11% Similarity=-0.009 Sum_probs=44.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEE-ecCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEV-AENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~-~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii~ 104 (145)
..++|.+...-+-..+...|.+.|+.|.. ..+.+.+-+.... ....+..+..++.+.+.. .+++.+.+....+-+++
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv 82 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELL-LGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL 82 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-hcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 36888888888888888888888988764 4444433222221 111344444444444433 35556655444444554
Q ss_pred Ee
Q 045936 105 VT 106 (145)
Q Consensus 105 lt 106 (145)
-.
T Consensus 83 nn 84 (235)
T 3l6e_A 83 HC 84 (235)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 462
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=45.85 E-value=95 Score=23.47 Aligned_cols=97 Identities=9% Similarity=0.046 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCe-EEEecCHHHHHHHHhcCCCccEEEEeCC-CCCC-CHHHHHHHHHhh-CCCCcEEEEecCCChHH
Q 045936 38 IRRIHSMILKSVGFK-VEVAENGKEAVDLFRTGAKFHIVFIDME-MPVM-DGIEATKAMRAM-KVESKIVGVTSRNSETE 113 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~-v~~~~~~~~~l~~l~~~~~~dlil~d~~-~~~~-~g~~~~~~l~~~-~~~~~ii~lt~~~~~~~ 113 (145)
....+....++.|.. ++.+++.+|+...+.. .+++|=++.. +.+. ..++....|... .++.++|.=++-..++.
T Consensus 145 ~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~l--ga~iIGinnr~L~t~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~ed 222 (452)
T 1pii_A 145 QYRQLAAVAHSLEMGVLTEVSNEEEQERAIAL--GAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQ 222 (452)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHHHT--TCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHC--CCCEEEEeCCCCCCCCCCHHHHHHHHHhCCCCCeEEEECCCCCHHH
Confidence 345555556678977 4589999999888876 3788776642 2211 124555555443 34566666677788999
Q ss_pred HHHHHHhcccEEe-----eCCCCHHHHHH
Q 045936 114 REVFMQAGLDLCY-----TKPLTMAKIVP 137 (145)
Q Consensus 114 ~~~~~~~g~~~~l-----~kP~~~~~l~~ 137 (145)
...+.+. +++++ .|+-++....+
T Consensus 223 v~~~~~~-a~avLVGealmr~~d~~~~~~ 250 (452)
T 1pii_A 223 VRELSHF-ANGFLIGSALMAHDDLHAAVR 250 (452)
T ss_dssp HHHHTTT-CSEEEECHHHHTCSCHHHHHH
T ss_pred HHHHHHh-CCEEEEcHHHcCCcCHHHHHH
Confidence 9999999 99986 55555544433
No 463
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=45.80 E-value=49 Score=20.16 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=42.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhc-CCCccEEEEeCCCCCCCHHHHHHHHH
Q 045936 28 FALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRT-GAKFHIVFIDMEMPVMDGIEATKAMR 94 (145)
Q Consensus 28 ~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~-~~~~dlil~d~~~~~~~g~~~~~~l~ 94 (145)
+|..+|-++......+..+...+..+. ...+..+.+..... ...+|+|+++.-.. ....++++.+.
T Consensus 65 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 65 EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 488999999988888888876664433 45566665444332 13699999985433 23334555555
No 464
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=45.78 E-value=60 Score=22.03 Aligned_cols=78 Identities=13% Similarity=-0.021 Sum_probs=43.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEEEe-cCHHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhhCCCCcEEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVEVA-ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAMKVESKIVG 104 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~~~-~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~~~~~~ii~ 104 (145)
.+++|.+...-+-..+...|.+.|+.|... .+.+..-+.... ....+.++..++.+.+.. .+++.+.+.+..+-+++
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv 84 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAA-YPDRAEAISLDVTDGERIDVVAADVLARYGRVDVLV 84 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-CTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEE
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-ccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 468888888888888888888889887744 333333222222 122344444444444333 35555555444444444
Q ss_pred E
Q 045936 105 V 105 (145)
Q Consensus 105 l 105 (145)
-
T Consensus 85 ~ 85 (281)
T 3m1a_A 85 N 85 (281)
T ss_dssp E
T ss_pred E
Confidence 3
No 465
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=45.73 E-value=89 Score=23.11 Aligned_cols=99 Identities=10% Similarity=0.173 Sum_probs=59.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhC-CCCcEEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMK-VESKIVG 104 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~-~~~~ii~ 104 (145)
+.+|+|++-.. +...+...|...|+.++......+.++.++. ....++.-|..- .++ |++.. ....+++
T Consensus 4 ~~~viIiG~Gr-~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-~g~~vi~GDat~-----~~~---L~~agi~~A~~vi 73 (413)
T 3l9w_A 4 GMRVIIAGFGR-FGQITGRLLLSSGVKMVVLDHDPDHIETLRK-FGMKVFYGDATR-----MDL---LESAGAAKAEVLI 73 (413)
T ss_dssp CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-TTCCCEESCTTC-----HHH---HHHTTTTTCSEEE
T ss_pred CCeEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-CCCeEEEcCCCC-----HHH---HHhcCCCccCEEE
Confidence 45799999865 6677778888889998877766777777765 346677766432 223 33332 2456666
Q ss_pred EecCCChHH---HHHHHHhccc-EEeeCCCCHHH
Q 045936 105 VTSRNSETE---REVFMQAGLD-LCYTKPLTMAK 134 (145)
Q Consensus 105 lt~~~~~~~---~~~~~~~g~~-~~l~kP~~~~~ 134 (145)
++...+... ...+...+.+ ..+.+-.+.+.
T Consensus 74 v~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~ 107 (413)
T 3l9w_A 74 NAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDH 107 (413)
T ss_dssp ECCSSHHHHHHHHHHHHHHCTTCEEEEEESSHHH
T ss_pred ECCCChHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 666554443 3334556665 34555444443
No 466
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=45.59 E-value=1e+02 Score=23.81 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCCccEEE-EeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHH-hcccEEe------eC
Q 045936 60 KEAVDLFRTGAKFHIVF-IDMEMPVM---DGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQ-AGLDLCY------TK 128 (145)
Q Consensus 60 ~~~l~~l~~~~~~dlil-~d~~~~~~---~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~-~g~~~~l------~k 128 (145)
.+..+.+.. ...+.++ .+..-.+. ..+++++.+++.- .+|||.-..-.+.+....+++ .|+++.+ ..
T Consensus 455 ~e~a~~~~~-~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~-~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~ 532 (555)
T 1jvn_A 455 WELTRACEA-LGAGEILLNCIDKDGSNSGYDLELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 532 (555)
T ss_dssp HHHHHHHHH-TTCCEEEECCGGGTTTCSCCCHHHHHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTT
T ss_pred HHHHHHHHH-cCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhC-CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcC
Confidence 344444444 2356444 44433222 2477888887653 678887777778888888887 7998864 45
Q ss_pred CCCHHHHHHHHHH
Q 045936 129 PLTMAKIVPLLEE 141 (145)
Q Consensus 129 P~~~~~l~~~l~~ 141 (145)
+++..++...+++
T Consensus 533 ~~~~~e~~~~l~~ 545 (555)
T 1jvn_A 533 EFTVNDVKEYLLE 545 (555)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8888888876643
No 467
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=45.43 E-value=68 Score=21.63 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=42.2
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCC--CCCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEM--PVMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~--~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+.+++...... ..|+|++|... ....-.++++.+++. .+.++....+.+....+.+.|++.+.
T Consensus 90 ~~~~i~~~~~a--Gad~I~l~~~~~~~p~~l~~~i~~~~~~----g~~v~~~v~t~eea~~a~~~Gad~Ig 154 (229)
T 3q58_A 90 YLQDVDALAQA--GADIIAFDASFRSRPVDIDSLLTRIRLH----GLLAMADCSTVNEGISCHQKGIEFIG 154 (229)
T ss_dssp SHHHHHHHHHH--TCSEEEEECCSSCCSSCHHHHHHHHHHT----TCEEEEECSSHHHHHHHHHTTCSEEE
T ss_pred cHHHHHHHHHc--CCCEEEECccccCChHHHHHHHHHHHHC----CCEEEEecCCHHHHHHHHhCCCCEEE
Confidence 34455555544 37999998764 234455677777764 23445566778888889999998774
No 468
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=45.41 E-value=68 Score=21.65 Aligned_cols=63 Identities=10% Similarity=0.012 Sum_probs=41.8
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCC--CCCHHHHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDMEMP--VMDGIEATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~~~--~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+.+++...... ..|+|+++...- ...-.++++.+++. .+.++....+.+....+.+.|++...
T Consensus 90 ~~~~i~~~~~~--Gad~V~l~~~~~~~p~~l~~~i~~~~~~----g~~v~~~v~t~eea~~a~~~Gad~Ig 154 (232)
T 3igs_A 90 FLDDVDALAQA--GAAIIAVDGTARQRPVAVEALLARIHHH----HLLTMADCSSVDDGLACQRLGADIIG 154 (232)
T ss_dssp SHHHHHHHHHH--TCSEEEEECCSSCCSSCHHHHHHHHHHT----TCEEEEECCSHHHHHHHHHTTCSEEE
T ss_pred cHHHHHHHHHc--CCCEEEECccccCCHHHHHHHHHHHHHC----CCEEEEeCCCHHHHHHHHhCCCCEEE
Confidence 44555555544 379999887642 23455677777664 23445566778888889999998764
No 469
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=45.40 E-value=57 Score=20.82 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=22.9
Q ss_pred CCccEEEEeCCCCCCCH---HHHHHHHHhh-CCCCcEEEEec
Q 045936 70 AKFHIVFIDMEMPVMDG---IEATKAMRAM-KVESKIVGVTS 107 (145)
Q Consensus 70 ~~~dlil~d~~~~~~~g---~~~~~~l~~~-~~~~~ii~lt~ 107 (145)
..+|+|++...+...+. ..+++.+.+. .|+..+++.+.
T Consensus 106 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 46899998876655554 4566666553 44444544433
No 470
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=45.32 E-value=51 Score=21.07 Aligned_cols=74 Identities=22% Similarity=0.050 Sum_probs=45.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCe-EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEE
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFK-VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM-KVESKIV 103 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~-v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~-~~~~~ii 103 (145)
.+|..+|-++......+..+...|.. +. ...+..+.+. ....+|+|+++.... +-..+++.+.+. .|...++
T Consensus 65 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~D~i~~~~~~~--~~~~~l~~~~~~LkpgG~l~ 139 (204)
T 3e05_A 65 GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD---DLPDPDRVFIGGSGG--MLEEIIDAVDRRLKSEGVIV 139 (204)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT---TSCCCSEEEESCCTT--CHHHHHHHHHHHCCTTCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh---cCCCCCEEEECCCCc--CHHHHHHHHHHhcCCCeEEE
Confidence 47888999888888888887766642 32 2333322221 113599999886554 445666766654 5555555
Q ss_pred EE
Q 045936 104 GV 105 (145)
Q Consensus 104 ~l 105 (145)
+.
T Consensus 140 ~~ 141 (204)
T 3e05_A 140 LN 141 (204)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 471
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=45.17 E-value=78 Score=22.29 Aligned_cols=91 Identities=10% Similarity=0.014 Sum_probs=55.9
Q ss_pred EEEEEeCCHHHHH----HHHHHHHhcCC--e-EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHh-hCCC
Q 045936 28 FALVVDDDPMIRR----IHSMILKSVGF--K-VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRA-MKVE 99 (145)
Q Consensus 28 ~vlii~~~~~~~~----~l~~~l~~~g~--~-v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~-~~~~ 99 (145)
-+||.+|+..... .++..-+..+. . -+.+.+.+++.+.+.. .+|.|.+|-..+ +.++...+ ....
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a--GaD~I~ld~~~~-----~~~k~av~~v~~~ 240 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA--GADLILLDNFPL-----EALREAVRRVGGR 240 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH--TCSEEEEESCCH-----HHHHHHHHHHTTS
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc--CCCEEEECCCCH-----HHHHHHHHHhCCC
Confidence 3677777765432 23333233443 2 2378899999888876 379999995322 11222222 2234
Q ss_pred CcEEEEecCCChHHHHHHHHhcccEEe
Q 045936 100 SKIVGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 100 ~~ii~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
.|+. .++.-+.+........|++.+-
T Consensus 241 ipi~-AsGGIt~eni~~~a~tGvD~Is 266 (286)
T 1x1o_A 241 VPLE-ASGNMTLERAKAAAEAGVDYVS 266 (286)
T ss_dssp SCEE-EESSCCHHHHHHHHHHTCSEEE
T ss_pred CeEE-EEcCCCHHHHHHHHHcCCCEEE
Confidence 5555 4666778888899999998864
No 472
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=45.13 E-value=38 Score=23.21 Aligned_cols=75 Identities=16% Similarity=0.015 Sum_probs=34.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhcCCe--EEEecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Q 045936 26 PYFALVVDDDPMIRRIHSMILKSVGFK--VEVAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIV 103 (145)
Q Consensus 26 ~~~vlii~~~~~~~~~l~~~l~~~g~~--v~~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii 103 (145)
+++|+++--....+.. ..+.++.|.. ...+.+.++.++.+ ..+|+|++|=-.--.+-.++++.+.. .+.+||
T Consensus 47 g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~---~~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI 120 (234)
T 2orv_A 47 QYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEA---LGVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVI 120 (234)
T ss_dssp TCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH---TTCSEEEESSGGGCTTHHHHHHHHHH--TTCEEE
T ss_pred CCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHh---ccCCEEEEEchhhhhhHHHHHHHHHh--CCCEEE
Confidence 4456665422222222 2334444533 22345555555554 24899999942221236677777766 355655
Q ss_pred EEe
Q 045936 104 GVT 106 (145)
Q Consensus 104 ~lt 106 (145)
+..
T Consensus 121 ~~G 123 (234)
T 2orv_A 121 VAA 123 (234)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
No 473
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=45.05 E-value=1e+02 Score=23.47 Aligned_cols=88 Identities=9% Similarity=-0.017 Sum_probs=54.7
Q ss_pred HHHHHHHHhc-CCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCC-----------C---CCHHHHHHHHHhhCCCCcE
Q 045936 40 RIHSMILKSV-GFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMP-----------V---MDGIEATKAMRAMKVESKI 102 (145)
Q Consensus 40 ~~l~~~l~~~-g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~-----------~---~~g~~~~~~l~~~~~~~~i 102 (145)
+.++.+-+.. +..+. .+.+.+++...... . .|.|.+..... + ...+..+..+++.. ++||
T Consensus 285 ~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a-G-ad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~-~ipV 361 (514)
T 1jcn_A 285 AMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA-G-VDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF-GVPI 361 (514)
T ss_dssp HHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH-T-CSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG-TCCE
T ss_pred HHHHHHHHhCCCCceEecccchHHHHHHHHHc-C-CCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC-CCCE
Confidence 3344443443 55544 46788888777765 3 78777743211 1 11344555554432 6888
Q ss_pred EEEecCCChHHHHHHHHhcccEE-eeCCC
Q 045936 103 VGVTSRNSETEREVFMQAGLDLC-YTKPL 130 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~-l~kP~ 130 (145)
+.-..-.+......++..||+.. +.+++
T Consensus 362 ia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 362 IADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp EEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred EEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 88888888899999999999886 34443
No 474
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=44.96 E-value=74 Score=21.94 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=47.5
Q ss_pred EEEEE-eCCHHH---HHHHHHHHHhcCCeEEE---e----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALVV-DDDPMI---RRIHSMILKSVGFKVEV---A----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii-~~~~~~---~~~l~~~l~~~g~~v~~---~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|.++ +++... ...++..+++.|..+.. + .+....+..+.. ..||+|++-. .+.....+++.+++.
T Consensus 140 ~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~i~~~~--~~~~a~~~~~~~~~~ 216 (346)
T 1usg_A 140 RIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKK-ENIDFVYYGG--YYPEMGQMLRQARSV 216 (346)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHH-TTCCEEEEES--CHHHHHHHHHHHHHT
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHh-cCCCEEEEcC--cchHHHHHHHHHHHc
Confidence 45444 444432 24456677777866531 2 244556666665 4689988753 123456788888887
Q ss_pred CCCCcEEEEecCCChHH
Q 045936 97 KVESKIVGVTSRNSETE 113 (145)
Q Consensus 97 ~~~~~ii~lt~~~~~~~ 113 (145)
....|++......++..
T Consensus 217 g~~~~~~~~~~~~~~~~ 233 (346)
T 1usg_A 217 GLKTQFMGPEGVGNASL 233 (346)
T ss_dssp TCCCEEEECGGGCCTTH
T ss_pred CCCCeEEecCCCCcHHH
Confidence 66677554333333333
No 475
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=44.77 E-value=75 Score=22.29 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=27.5
Q ss_pred CCCCcEEEEecCC--ChHHHHHHHHhcccEEeeCCCCH--HHHHHHHH
Q 045936 97 KVESKIVGVTSRN--SETEREVFMQAGLDLCYTKPLTM--AKIVPLLE 140 (145)
Q Consensus 97 ~~~~~ii~lt~~~--~~~~~~~~~~~g~~~~l~kP~~~--~~l~~~l~ 140 (145)
.+.+-+++++.+. -.+....++++|.+-++-||+.. ++..+.++
T Consensus 70 ~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 117 (312)
T 3o9z_A 70 GEGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKE 117 (312)
T ss_dssp TCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHH
T ss_pred CCCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHH
Confidence 3455555555443 33456678899988888998644 55555443
No 476
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=44.72 E-value=21 Score=25.01 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=33.5
Q ss_pred CcEEEEEeCC--------HHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEeCC
Q 045936 26 PYFALVVDDD--------PMIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFIDME 80 (145)
Q Consensus 26 ~~~vlii~~~--------~~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d~~ 80 (145)
+.+|.|+-.. ......+...|+..||.+..+...+..+..+.. ..+|+++.-.+
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~-~~~D~v~~~~h 74 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKD-EGFVRAFNALH 74 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHH-TTCCEEEECCC
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhh-cCCCEEEEcCC
Confidence 4567666541 124466777888899998877744332334444 46899886443
No 477
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=44.49 E-value=90 Score=22.78 Aligned_cols=76 Identities=16% Similarity=0.063 Sum_probs=49.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhc---------------CCe-EE-EecCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHH
Q 045936 27 YFALVVDDDPMIRRIHSMILKSV---------------GFK-VE-VAENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEA 89 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~---------------g~~-v~-~~~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~ 89 (145)
.+|+.+|-++...+.++.-++.+ |.. +. ...|..+.+.... ..+|+|++|- + ....++
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~~--~~fD~I~lDP--~-~~~~~~ 146 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERH--RYFHFIDLDP--F-GSPMEF 146 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHST--TCEEEEEECC--S-SCCHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhcc--CCCCEEEeCC--C-CCHHHH
Confidence 46999999999999999988877 754 43 5567777665432 3699999874 2 233455
Q ss_pred HHHHHh-hCCCCcEEEEecC
Q 045936 90 TKAMRA-MKVESKIVGVTSR 108 (145)
Q Consensus 90 ~~~l~~-~~~~~~ii~lt~~ 108 (145)
+....+ ..+.. ++.++..
T Consensus 147 l~~a~~~lk~gG-~l~vt~t 165 (378)
T 2dul_A 147 LDTALRSAKRRG-ILGVTAT 165 (378)
T ss_dssp HHHHHHHEEEEE-EEEEEEC
T ss_pred HHHHHHhcCCCC-EEEEEee
Confidence 554433 23333 5666553
No 478
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=44.48 E-value=91 Score=22.85 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=54.8
Q ss_pred CcEEEEEeC--CHH---HHHHHHHHHHhcCCeEEEecCHHHHHHHHh--------------------cCCCccEEEEeCC
Q 045936 26 PYFALVVDD--DPM---IRRIHSMILKSVGFKVEVAENGKEAVDLFR--------------------TGAKFHIVFIDME 80 (145)
Q Consensus 26 ~~~vlii~~--~~~---~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~--------------------~~~~~dlil~d~~ 80 (145)
..+|+|+.. ++. ....+..+|...|+.|..-....+.+.... -...+|+||+
T Consensus 38 ~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~--- 114 (365)
T 3pfn_A 38 PKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC--- 114 (365)
T ss_dssp CCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE---
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE---
Confidence 346888863 233 346667778788988764443333221110 0124677664
Q ss_pred CCCCCHHHHHHHHHhh-CCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHhh
Q 045936 81 MPVMDGIEATKAMRAM-KVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQK 144 (145)
Q Consensus 81 ~~~~~g~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~~ 144 (145)
-++||. ++...+.. ....||+-+.. |--+||. +++++++...++++++
T Consensus 115 -lGGDGT-~L~aa~~~~~~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~vl~ 163 (365)
T 3pfn_A 115 -LGGDGT-LLYASSLFQGSVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQVIE 163 (365)
T ss_dssp -ESSTTH-HHHHHHHCSSSCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHHHH
T ss_pred -EcChHH-HHHHHHHhccCCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHHHc
Confidence 256663 33333332 34678887754 3334555 6666777777776654
No 479
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=44.43 E-value=90 Score=22.80 Aligned_cols=72 Identities=10% Similarity=-0.033 Sum_probs=47.8
Q ss_pred CCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCCC------------CCHHHHHHHHHhhCCCCcEEEEecCCChHHHH
Q 045936 50 GFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMPV------------MDGIEATKAMRAMKVESKIVGVTSRNSETERE 115 (145)
Q Consensus 50 g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~~------------~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~ 115 (145)
+..+. .+.+.+++...... ..|.|.+... ++ .+.+..+....... .||+.-..-.+...+.
T Consensus 141 ~~~Vi~G~V~T~e~A~~a~~a--GaD~I~Vg~g-~G~~~~tr~~~g~g~p~l~aI~~~~~~~--~PVIAdGGI~~~~di~ 215 (361)
T 3r2g_A 141 SRCIMAGNVATYAGADYLASC--GADIIKAGIG-GGSVCSTRIKTGFGVPMLTCIQDCSRAD--RSIVADGGIKTSGDIV 215 (361)
T ss_dssp TCEEEEEEECSHHHHHHHHHT--TCSEEEECCS-SSSCHHHHHHHCCCCCHHHHHHHHTTSS--SEEEEESCCCSHHHHH
T ss_pred CCeEEEcCcCCHHHHHHHHHc--CCCEEEEcCC-CCcCccccccCCccHHHHHHHHHHHHhC--CCEEEECCCCCHHHHH
Confidence 55544 47888988887775 3898888533 22 12333344433322 1787777777889999
Q ss_pred HHHHhcccEEe
Q 045936 116 VFMQAGLDLCY 126 (145)
Q Consensus 116 ~~~~~g~~~~l 126 (145)
.++..||+.+.
T Consensus 216 kALa~GAd~V~ 226 (361)
T 3r2g_A 216 KALAFGADFVM 226 (361)
T ss_dssp HHHHTTCSEEE
T ss_pred HHHHcCCCEEE
Confidence 99999998864
No 480
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=44.38 E-value=82 Score=22.29 Aligned_cols=54 Identities=24% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCC-CcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHH
Q 045936 87 IEATKAMRAMKVE-SKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEEL 142 (145)
Q Consensus 87 ~~~~~~l~~~~~~-~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~ 142 (145)
.+.++..++..+. .++++-+. ..+....+.+.|++....-+++++.+...++.+
T Consensus 184 ~~ai~~~r~~~~~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l 238 (299)
T 2jbm_A 184 EKAVRAARQAADFALKVEVECS--SLQEAVQAAEAGADLVLLDNFKPEELHPTATVL 238 (299)
T ss_dssp HHHHHHHHHHHTTTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCCeEEEecC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3456666665543 45555443 336677788999999888899999988766543
No 481
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=44.35 E-value=65 Score=23.50 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=39.7
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhcCCeEEEec---------CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHH
Q 045936 27 YFALVVDDDPMI----RRIHSMILKSVGFKVEVAE---------NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAM 93 (145)
Q Consensus 27 ~~vlii~~~~~~----~~~l~~~l~~~g~~v~~~~---------~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l 93 (145)
.+++|+-|.... ...+...|+..|+.+..+. +.+++.+.++. ..+|+|| -+.+.+..+..+.+
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~II---avGGGsv~D~aK~i 107 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKD-NNSDFVI---SLGGGSPHDCAKAI 107 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHH-HTCSEEE---EEESHHHHHHHHHH
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHh-cCcCEEE---EeCCcHHHHHHHHH
Confidence 478888875432 3446667777787654332 44455666665 4588776 24566667777766
Q ss_pred Hh
Q 045936 94 RA 95 (145)
Q Consensus 94 ~~ 95 (145)
..
T Consensus 108 a~ 109 (383)
T 3ox4_A 108 AL 109 (383)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 482
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=44.15 E-value=67 Score=21.26 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=4.1
Q ss_pred HHHHhcCCeE
Q 045936 44 MILKSVGFKV 53 (145)
Q Consensus 44 ~~l~~~g~~v 53 (145)
..+++.||.+
T Consensus 26 ~~a~~~g~~~ 35 (272)
T 3o74_A 26 QGARARGYQL 35 (272)
T ss_dssp HHHHHTTCEE
T ss_pred HHHHHCCCEE
Confidence 3334444443
No 483
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=43.98 E-value=57 Score=22.87 Aligned_cols=68 Identities=9% Similarity=-0.004 Sum_probs=38.6
Q ss_pred CHHHHHHHHhcCCCccEEEEeCC--CCCCC---HHHHHHHHHhhCCCCcEEEEecCC------------C-----hHHHH
Q 045936 58 NGKEAVDLFRTGAKFHIVFIDME--MPVMD---GIEATKAMRAMKVESKIVGVTSRN------------S-----ETERE 115 (145)
Q Consensus 58 ~~~~~l~~l~~~~~~dlil~d~~--~~~~~---g~~~~~~l~~~~~~~~ii~lt~~~------------~-----~~~~~ 115 (145)
....+.+.+.+...++++|+... .+-.. .+..+..+++.+++.||++=++.. . .....
T Consensus 144 e~~~A~~~i~~~Gn~~i~L~~rg~~~~~~~~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~ 223 (280)
T 2qkf_A 144 QMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLAL 223 (280)
T ss_dssp GHHHHHHHHHHTTCCCEEEEECCEECSTTCEECCTTHHHHHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHH
Confidence 34446666665456788887643 22111 233556677776677877522222 3 34555
Q ss_pred HHHHhcccEE
Q 045936 116 VFMQAGLDLC 125 (145)
Q Consensus 116 ~~~~~g~~~~ 125 (145)
.+...|+++.
T Consensus 224 aava~Ga~G~ 233 (280)
T 2qkf_A 224 AGMATRLAGL 233 (280)
T ss_dssp HHHTTCCSEE
T ss_pred HHHHcCCCEE
Confidence 6778899854
No 484
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=43.72 E-value=83 Score=22.19 Aligned_cols=77 Identities=10% Similarity=-0.022 Sum_probs=45.6
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhcCCeEEE---e----cCHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 045936 28 FALVV-DDDPM---IRRIHSMILKSVGFKVEV---A----ENGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAM 96 (145)
Q Consensus 28 ~vlii-~~~~~---~~~~l~~~l~~~g~~v~~---~----~~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~ 96 (145)
+|.++ +++.. ....++..++..|..+.. + .+....+..+.. ..+|+|++... ..+...+++.+++.
T Consensus 144 ~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~-~~~d~v~~~~~--~~~~~~~~~~~~~~ 220 (379)
T 3n0w_A 144 TWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKA-SGAQLIVSTSG--GAANINIMKQAREF 220 (379)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHHHH-HTCSEEEECCC--HHHHHHHHHHHHHT
T ss_pred EEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHHHH-CCCCEEEEecc--cchHHHHHHHHHHc
Confidence 45444 44443 345567777777876542 2 255566776665 46899987532 23455678888877
Q ss_pred CCCCc-EEEEec
Q 045936 97 KVESK-IVGVTS 107 (145)
Q Consensus 97 ~~~~~-ii~lt~ 107 (145)
....| +++.+.
T Consensus 221 g~~~~~~~~~~~ 232 (379)
T 3n0w_A 221 GLPSKTQKVGGM 232 (379)
T ss_dssp TCSCSSCEEECC
T ss_pred CCCCCCcEEEec
Confidence 66666 344433
No 485
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=43.48 E-value=81 Score=21.99 Aligned_cols=63 Identities=13% Similarity=0.028 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCeEEEec-----CHHHHHHHHhcCCCccEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec
Q 045936 40 RIHSMILKSVGFKVEVAE-----NGKEAVDLFRTGAKFHIVFIDMEMPVMDGIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~~~~-----~~~~~l~~l~~~~~~dlil~d~~~~~~~g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
..+....++.||.+..+. +.+..++.+.. ..+|.||+-.. .. . +.+..+...+|++|++++..
T Consensus 27 ~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~-~~~dgIi~~~~--~~-~-~~~~~~a~~~p~~p~v~id~ 94 (318)
T 2fqx_A 27 EGISRFAQENNAKCKYVTASTDAEYVPSLSAFAD-ENMGLVVACGS--FL-V-EAVIETSARFPKQKFLVIDA 94 (318)
T ss_dssp HHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHH-TTCSEEEEEST--TT-H-HHHHHHHHHCTTSCEEEESS
T ss_pred HHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHH-cCCCEEEECCh--hH-H-HHHHHHHHHCCCCEEEEEcC
Confidence 455667778898866432 22345555555 46898886421 11 1 12344444567888888765
No 486
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=43.47 E-value=67 Score=22.63 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=21.3
Q ss_pred CcEEEEecCC--ChHHHHHHHHhcccEEeeCCCCH--HHHHHHH
Q 045936 100 SKIVGVTSRN--SETEREVFMQAGLDLCYTKPLTM--AKIVPLL 139 (145)
Q Consensus 100 ~~ii~lt~~~--~~~~~~~~~~~g~~~~l~kP~~~--~~l~~~l 139 (145)
+-+++++.+. -.+....+++.|..-++-||+.. ++..+.+
T Consensus 68 ~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~ 111 (330)
T 3e9m_A 68 IDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELF 111 (330)
T ss_dssp CSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHH
T ss_pred CCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHH
Confidence 3344443333 23345567777877777787543 4444333
No 487
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=43.33 E-value=86 Score=22.26 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=51.0
Q ss_pred cCHHHHHHHHhcCCCccEEEEeCC----------------------C-CCCCHHHHHHHHHhhCCCCcEEEEecCCChHH
Q 045936 57 ENGKEAVDLFRTGAKFHIVFIDME----------------------M-PVMDGIEATKAMRAMKVESKIVGVTSRNSETE 113 (145)
Q Consensus 57 ~~~~~~l~~l~~~~~~dlil~d~~----------------------~-~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~ 113 (145)
.+.+++...... .+|.|.++-+ . .+.+.++.+..+++..+.+||+....-.+...
T Consensus 193 ~~~e~a~~~~~~--G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d 270 (332)
T 1vcf_A 193 LSREAALALRDL--PLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTD 270 (332)
T ss_dssp CCHHHHHHHTTS--CCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHH
T ss_pred CCHHHHHHHHHc--CCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHH
Confidence 567776654443 4888877432 1 12245667777777655789999999999999
Q ss_pred HHHHHHhcccEE-eeCCCC
Q 045936 114 REVFMQAGLDLC-YTKPLT 131 (145)
Q Consensus 114 ~~~~~~~g~~~~-l~kP~~ 131 (145)
...++..||+.+ +..|+-
T Consensus 271 ~~kal~~GAd~V~igr~~l 289 (332)
T 1vcf_A 271 GAKALALGADLLAVARPLL 289 (332)
T ss_dssp HHHHHHHTCSEEEECGGGH
T ss_pred HHHHHHhCCChHhhhHHHH
Confidence 999999999986 445543
No 488
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=43.18 E-value=40 Score=20.83 Aligned_cols=93 Identities=12% Similarity=-0.023 Sum_probs=50.4
Q ss_pred cEEEEEeCC---HHHHHHHHHHHHhcCCeEEEecCHH--HHHHH------Hhc-CCCccEEEEeCCCCCCCHHHHHHHHH
Q 045936 27 YFALVVDDD---PMIRRIHSMILKSVGFKVEVAENGK--EAVDL------FRT-GAKFHIVFIDMEMPVMDGIEATKAMR 94 (145)
Q Consensus 27 ~~vlii~~~---~~~~~~l~~~l~~~g~~v~~~~~~~--~~l~~------l~~-~~~~dlil~d~~~~~~~g~~~~~~l~ 94 (145)
.+|.+++-. ......+...|...||.++.++... +.+.. +.+ ...+|++++- .|.....++++.+.
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~--vp~~~v~~v~~~~~ 91 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVF--RNSEAAWGVAQEAI 91 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECC--SCSTHHHHHHHHHH
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEE--eCHHHHHHHHHHHH
Confidence 468888763 2344556666777789877655433 11110 110 1247888764 45555666776665
Q ss_pred hhCCCCcEEEEecCCChHHHHHHHHhcc
Q 045936 95 AMKVESKIVGVTSRNSETEREVFMQAGL 122 (145)
Q Consensus 95 ~~~~~~~ii~lt~~~~~~~~~~~~~~g~ 122 (145)
+..... +++.++....+....+.+.|+
T Consensus 92 ~~g~~~-i~i~~~~~~~~l~~~a~~~Gi 118 (145)
T 2duw_A 92 AIGAKT-LWLQLGVINEQAAVLAREAGL 118 (145)
T ss_dssp HHTCCE-EECCTTCCCHHHHHHHHTTTC
T ss_pred HcCCCE-EEEcCChHHHHHHHHHHHcCC
Confidence 544322 444444445555555666665
No 489
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=43.10 E-value=66 Score=20.82 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=25.5
Q ss_pred CcEEEEEeCCH--HHHHHHHHHHHhcCCeEEEe
Q 045936 26 PYFALVVDDDP--MIRRIHSMILKSVGFKVEVA 56 (145)
Q Consensus 26 ~~~vlii~~~~--~~~~~l~~~l~~~g~~v~~~ 56 (145)
+|+|.|..|+. ...+.+...|+..||+|.-+
T Consensus 21 ~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~ 53 (166)
T 3s5p_A 21 SMKVAFASDHGGRDLRMFLQQRASAHGYEVMDL 53 (166)
T ss_dssp TCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEEECchHHHHHHHHHHHHHHCCCEEEEc
Confidence 47999999986 56688999999999998743
No 490
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=43.07 E-value=93 Score=22.91 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=36.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhcCCeEE-EecCHHHHHHHHhcCCCccEEEEeCC
Q 045936 27 YFALVVDDDPMIRRIHSMILKSVGFKVE-VAENGKEAVDLFRTGAKFHIVFIDME 80 (145)
Q Consensus 27 ~~vlii~~~~~~~~~l~~~l~~~g~~v~-~~~~~~~~l~~l~~~~~~dlil~d~~ 80 (145)
.+|..+|-++.....++..+...|..+. ...|..+....+.. ..+|+|++|.-
T Consensus 271 ~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~-~~fD~Vl~D~P 324 (429)
T 1sqg_A 271 AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGE-QQFDRILLDAP 324 (429)
T ss_dssp CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTT-CCEEEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhccc-CCCCEEEEeCC
Confidence 4789999999888888888888775433 33444433333333 46999999853
No 491
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=43.06 E-value=94 Score=22.60 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCeEE--EecCHHHHHHHHhcCCCccEEEEeCCCC-----------CCCHHHHHHHHHhh--CCCCcE
Q 045936 38 IRRIHSMILKSVGFKVE--VAENGKEAVDLFRTGAKFHIVFIDMEMP-----------VMDGIEATKAMRAM--KVESKI 102 (145)
Q Consensus 38 ~~~~l~~~l~~~g~~v~--~~~~~~~~l~~l~~~~~~dlil~d~~~~-----------~~~g~~~~~~l~~~--~~~~~i 102 (145)
..+.++.+-+..+..+. .+.+.+++...... ..|.|.+...-. +...+..+..+.+. ...+||
T Consensus 133 ~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a--GaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPV 210 (361)
T 3khj_A 133 IIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN--GADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPI 210 (361)
T ss_dssp HHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT--TCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc--CcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeE
Confidence 34445544444465544 67888888777765 379888742110 13445556665432 236788
Q ss_pred EEEecCCChHHHHHHHHhcccEEe
Q 045936 103 VGVTSRNSETEREVFMQAGLDLCY 126 (145)
Q Consensus 103 i~lt~~~~~~~~~~~~~~g~~~~l 126 (145)
+.-..-.+...+..++..||+...
T Consensus 211 IA~GGI~~~~di~kala~GAd~V~ 234 (361)
T 3khj_A 211 IADGGIRYSGDIGKALAVGASSVM 234 (361)
T ss_dssp EEESCCCSHHHHHHHHHHTCSEEE
T ss_pred EEECCCCCHHHHHHHHHcCCCEEE
Confidence 877777788899999999999874
No 492
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=42.96 E-value=35 Score=24.17 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=23.1
Q ss_pred EEEeCCH-HHHHHHHHHHHhcCCeEEEecCHHHHHHHHhcCCCccEEEEe
Q 045936 30 LVVDDDP-MIRRIHSMILKSVGFKVEVAENGKEAVDLFRTGAKFHIVFID 78 (145)
Q Consensus 30 lii~~~~-~~~~~l~~~l~~~g~~v~~~~~~~~~l~~l~~~~~~dlil~d 78 (145)
-++|.++ ...+.+....+++|+....+.+.++.+.. ..+|+|++-
T Consensus 29 av~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~----~~vD~V~I~ 74 (337)
T 3ip3_A 29 GIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEK----EKPDILVIN 74 (337)
T ss_dssp EEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHH----HCCSEEEEC
T ss_pred EEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcC----CCCCEEEEe
Confidence 4555444 23444555555555434456666666552 236766654
No 493
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=42.88 E-value=75 Score=21.45 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=8.9
Q ss_pred HHHHHHHHhcCCeEEE
Q 045936 40 RIHSMILKSVGFKVEV 55 (145)
Q Consensus 40 ~~l~~~l~~~g~~v~~ 55 (145)
..+...+++.||.+..
T Consensus 28 ~gi~~~a~~~g~~~~~ 43 (290)
T 2rgy_A 28 KQTDLELRAVHRHVVV 43 (290)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHCCCEEEE
Confidence 3445555666776553
No 494
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.81 E-value=51 Score=23.07 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=40.1
Q ss_pred CccEEEEeCCCCCCC--HH-HHHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFIDMEMPVMD--GI-EATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d~~~~~~~--g~-~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+.++++|- ....+ .. .+.+.+.+......++++++... . ....+...+..+-.+|++.+++...++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~-~-l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT-R-IIDPLASQCSKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG-G-SCHHHHHHSEEEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh-h-CcchhhccCceEEeCCCCHHHHHHHHHHHH
Confidence 356999984 33232 22 24455554444556666654332 2 223333344566678999999998887754
No 495
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=42.79 E-value=72 Score=21.23 Aligned_cols=98 Identities=8% Similarity=0.068 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCeE-EEecCHHHHHHHHhcCCCccEEEEeCCCC-C------C---C-HHHHHHHHHhhCCCCcEEEEec
Q 045936 40 RIHSMILKSVGFKV-EVAENGKEAVDLFRTGAKFHIVFIDMEMP-V------M---D-GIEATKAMRAMKVESKIVGVTS 107 (145)
Q Consensus 40 ~~l~~~l~~~g~~v-~~~~~~~~~l~~l~~~~~~dlil~d~~~~-~------~---~-g~~~~~~l~~~~~~~~ii~lt~ 107 (145)
..+.......|..+ .++.+..+.-+. .. ...+++-+.-... + . + .-...+.++......|+++-.+
T Consensus 101 ~~~~~~a~~~Gl~~iv~v~~~~e~~~~-~~-~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggG 178 (219)
T 2h6r_A 101 EAVINKCKNLGLETIVCTNNINTSKAV-AA-LSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAG 178 (219)
T ss_dssp HHHHHHHHHHTCEEEEEESSSHHHHHH-TT-TCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSS
T ss_pred HHHHHHHHHCCCeEEEEeCCchHHHHH-Hh-CCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 33344445668764 466666665443 32 2356665554332 1 1 1 1234455555444677776666
Q ss_pred CCChHHHHHHHHhcccEEe-----eCCCCHHHHHHHH
Q 045936 108 RNSETEREVFMQAGLDLCY-----TKPLTMAKIVPLL 139 (145)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~l 139 (145)
-..++....+...|+++++ .|+-++.+..+.+
T Consensus 179 I~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l 215 (219)
T 2h6r_A 179 ISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIREL 215 (219)
T ss_dssp CCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHH
T ss_pred cCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHH
Confidence 6667778778899999986 4565555544433
No 496
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=42.75 E-value=79 Score=21.67 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=38.4
Q ss_pred CccEEEEeC-CCCCCCHHH-HHHHHHhhCCCCcEEEEecCCChHHHHHHHHhcccEEeeCCCCHHHHHHHHHHHh
Q 045936 71 KFHIVFIDM-EMPVMDGIE-ATKAMRAMKVESKIVGVTSRNSETEREVFMQAGLDLCYTKPLTMAKIVPLLEELQ 143 (145)
Q Consensus 71 ~~dlil~d~-~~~~~~g~~-~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~l~~~~ 143 (145)
.+.++++|- +.-..+..+ +.+.+.....++.+|+.++.. .. ....+...+..+-.+|++.+++...++...
T Consensus 110 ~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~-~~-l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 110 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS-SK-IIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 182 (327)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG-GG-SCHHHHHTEEEEECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc-cc-cCHHHHhhCcEEEecCCCHHHHHHHHHHHH
Confidence 367888883 211222333 444444433455555555432 22 223333344466678999999988887654
No 497
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=42.71 E-value=58 Score=20.07 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=27.6
Q ss_pred CCcEEEEecCCChHHHHHHH-HhcccEEeeCC--CCHHHHHHHHHHHhh
Q 045936 99 ESKIVGVTSRNSETEREVFM-QAGLDLCYTKP--LTMAKIVPLLEELQK 144 (145)
Q Consensus 99 ~~~ii~lt~~~~~~~~~~~~-~~g~~~~l~kP--~~~~~l~~~l~~~~~ 144 (145)
..|+|++....+.......+ +.|+ +++..+ ++.++|...|++++.
T Consensus 106 G~P~i~~p~~~~Q~~na~~l~~~g~-g~~~~~~~~~~~~l~~~i~~ll~ 153 (170)
T 2o6l_A 106 GIPMVGIPLFADQPDNIAHMKARGA-AVRVDFNTMSSTDLLNALKRVIN 153 (170)
T ss_dssp TCCEEECCCSTTHHHHHHHHHTTTS-EEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEeccchhhHHHHHHHHHHcCC-eEEeccccCCHHHHHHHHHHHHc
Confidence 56787776554444444444 4454 444443 488999999988763
No 498
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=42.66 E-value=83 Score=21.89 Aligned_cols=52 Identities=10% Similarity=0.037 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCC---hH-HHHHHHHhcccEEeeCCCC--HHHHHHHHHH
Q 045936 86 GIEATKAMRAMKVESKIVGVTSRNS---ET-EREVFMQAGLDLCYTKPLT--MAKIVPLLEE 141 (145)
Q Consensus 86 g~~~~~~l~~~~~~~~ii~lt~~~~---~~-~~~~~~~~g~~~~l~kP~~--~~~l~~~l~~ 141 (145)
+..+++.+.. .+|+|+...... .. ......+.|. +++..|-+ .++|...|.+
T Consensus 264 ~~~~~EAma~---G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~ 321 (364)
T 1f0k_A 264 ALTVSEIAAA---GLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAG 321 (364)
T ss_dssp HHHHHHHHHH---TCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHT
T ss_pred hHHHHHHHHh---CCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHh
Confidence 4555555433 567765533321 11 1233456676 88888855 8889888764
No 499
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=42.58 E-value=76 Score=21.40 Aligned_cols=81 Identities=4% Similarity=-0.003 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCCeEEEec----C---HHHHHHHHhcCCCccEEEEeCCCCCCCHH-HHHHHHHhh
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGFKVEVAE----N---GKEAVDLFRTGAKFHIVFIDMEMPVMDGI-EATKAMRAM 96 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~~v~~~~----~---~~~~l~~l~~~~~~dlil~d~~~~~~~g~-~~~~~l~~~ 96 (145)
.+..++|.+...-+-..+...|.+.|+.|.... + .++....+.. ....+..+..++.+.+.. .+++.+.+.
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 88 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELED-QGAKVALYQSDLSNEEEVAKLFDFAEKE 88 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHT-TTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 345789999998899999999988899877531 2 2223333443 234566666555555444 466666665
Q ss_pred CCCCcEEEEe
Q 045936 97 KVESKIVGVT 106 (145)
Q Consensus 97 ~~~~~ii~lt 106 (145)
+..+-+++-.
T Consensus 89 ~g~iD~lvnn 98 (262)
T 3ksu_A 89 FGKVDIAINT 98 (262)
T ss_dssp HCSEEEEEEC
T ss_pred cCCCCEEEEC
Confidence 4444455443
No 500
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=42.37 E-value=68 Score=20.80 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=38.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhcCC--eEEEecCHHHHHHHHhcCCCccEEEEeC
Q 045936 25 RPYFALVVDDDPMIRRIHSMILKSVGF--KVEVAENGKEAVDLFRTGAKFHIVFIDM 79 (145)
Q Consensus 25 ~~~~vlii~~~~~~~~~l~~~l~~~g~--~v~~~~~~~~~l~~l~~~~~~dlil~d~ 79 (145)
.+.+|.+... ......+...+...|+ .+..+.+..+++..+.. +..|+++.+.
T Consensus 147 ~g~~i~~~~g-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~-g~vDa~~~~~ 201 (259)
T 2v25_A 147 KGANIGVAQA-ATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDA-KRVDAFSVDK 201 (259)
T ss_dssp TTCEEEEETT-CSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT-TSSSEEEEEH
T ss_pred CCCEEEEecC-CchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHc-CCCcEEEecH
Confidence 3556666543 4455667777777775 56788999999999998 5799999874
Done!