BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045937
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 105 bits (261), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 64/75 (85%)
Query: 4 VLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIATSRLGFSNS 63
V+W+I G+NS+V ++++V CLG VDGG +TSIVIGGHQL++NLVQFD+ATSR+GFS +
Sbjct: 339 VVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGT 398
Query: 64 LLLQRTMCSNFNFTS 78
LL RT C+NFNFTS
Sbjct: 399 LLGSRTTCANFNFTS 413
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 64/75 (85%)
Query: 4 VLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIATSRLGFSNS 63
V+W+I G+NS+V ++++V CLG VDGG +TSIVIGGHQL++NLVQFD+ATSR+GFS +
Sbjct: 339 VVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGT 398
Query: 64 LLLQRTMCSNFNFTS 78
LL RT C+NFNFTS
Sbjct: 399 LLGSRTTCANFNFTS 413
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 5 LWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIATSRLGFSNSL 64
+W I G + +V+ V+CLG ++GG+ P+ I +G QL+ NLV FD+A SR+GFS S
Sbjct: 327 VWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSS 386
Query: 65 LLQR-TMCSN-FNF 76
L C++ FNF
Sbjct: 387 LHSHGVKCADLFNF 400
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 6 WSIIGANSIVRVSNDVSCLGFV-----DGGVTPKTSIVIGGHQLDNNLVQFDIATSRLGF 60
W++ G NS+V V +C+ FV D G ++++GG Q+++ ++ FD+ RLGF
Sbjct: 312 WAMTGKNSMVDVKPGTACVAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGF 371
Query: 61 SNSLLLQRTMCSNFNFTST 79
L T CS+FNF +
Sbjct: 372 LR--LPHFTGCSSFNFARS 388
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 6 WSIIGANSIVRVSNDVSCLGFVD-----GGVTPKTSIVIGGHQLDNNLVQFDIATSRLGF 60
W++ G NS+V V +C+ FV+ G ++++GG Q+++ ++ FD+ RLGF
Sbjct: 310 WTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369
Query: 61 S 61
S
Sbjct: 370 S 370
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 6 WSIIGANSIVRVSNDVSCLGFVD-----GGVTPKTSIVIGGHQLDNNLVQFDIATSRLGF 60
W++ G NS+V V +C+ FV+ G ++++GG Q+++ ++ FD+ RLGF
Sbjct: 310 WTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369
Query: 61 S 61
S
Sbjct: 370 S 370
>pdb|3FEC|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Iii
(GcpiiiNAALADASE II), PSEUDO-Unliganded
pdb|3FED|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH A TRANSITION STATE ANALOG OF Glu-Glu
pdb|3FEE|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH QUISQUALIC ACID
pdb|3FF3|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH L-Glutamate
Length = 707
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 3 KVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQ 43
KV + N I R+ N V G + G V P +++GGH+
Sbjct: 298 KVRMHVYNINKITRIYNVV---GTIRGSVEPDRYVILGGHR 335
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 30 GVTPKT-SIVIGGHQLDNNLVQFDIATSRLGFSNS 63
G++P T ++VIG ++ V FD A R+GF+ S
Sbjct: 320 GISPSTNALVIGATVMEGFYVIFDRAQKRVGFAAS 354
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 3 KVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQ 43
KV I N + R+ N +G + G V P +++GGH+
Sbjct: 286 KVKMHIHSTNEVTRIYN---VIGTLRGAVEPDRYVILGGHR 323
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 3 KVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQ 43
KV I N + R+ N +G + G V P +++GGH+
Sbjct: 330 KVKMHIHSTNEVTRIYN---VIGTLRGAVEPDRYVILGGHR 367
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 3 KVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQ 43
KV I N + R+ N +G + G V P +++GGH+
Sbjct: 300 KVKMHIHSTNEVTRIYN---VIGTLRGAVEPDRYVILGGHR 337
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 3 KVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQ 43
KV I N + R+ N +G + G V P +++GGH+
Sbjct: 300 KVKMHIHSTNEVTRIYN---VIGTLRGAVEPDRYVILGGHR 337
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 3 KVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQ 43
KV I N + R+ N +G + G V P +++GGH+
Sbjct: 300 KVKMHIHSTNEVTRIYN---VIGTLRGAVEPDRYVILGGHR 337
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 3 KVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQ 43
KV I N + R+ N +G + G V P +++GGH+
Sbjct: 298 KVKMHIHSTNEVTRIYN---VIGTLRGAVEPDRYVILGGHR 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,109,553
Number of Sequences: 62578
Number of extensions: 64437
Number of successful extensions: 216
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 15
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)