BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045938
(681 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 36/192 (18%)
Query: 301 SLVSFPEVALPS------KLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYI 354
+L P ALP+ +L+++ IR C L LPE + T++S E + SL
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSL--- 188
Query: 355 AGVQLPPSLKWTLTVEEGIQXXXXXXXXXXXLLEGLHISRCPSLTCIFSKNELPATLESL 414
L+WT GI+ I+ +L + +N P +
Sbjct: 189 -------RLEWT-----GIRSLPAS------------IANLQNLKSLKIRNS-PLSALGP 223
Query: 415 EVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEI 474
+ +LP L+ LD+ C+ L + L+ + + +C NL LP +H L QL+++
Sbjct: 224 AIHHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 475 GIWECENLVSFP 486
+ C NL P
Sbjct: 283 DLRGCVNLSRLP 294
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 387 LEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSC--SELESIAERLDNN 444
L L I CP LT ELP L S + L +L + + S+ + N
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 445 TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ--GGLPCAKLTRLEISY 502
+L+++ I L L +H+L +L+E+ + C L ++P GG A L RL +
Sbjct: 206 QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKD 262
Query: 503 CKRLQVLPKGLHNLTSLQQLTI 524
C L LP +H LT L++L +
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDL 284
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 407 LPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLH 466
LPA++ +L+ +LKSL + + S L ++ + + LE + + C L+ P
Sbjct: 198 LPASIANLQ------NLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 467 NLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLP 510
L+ + + +C NL++ P +L +L++ C L LP
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 267 LEYIDLRDCQDLVKXXXXXXXXXXXREIEIYGCSSLVSFP-EVALPSKLKKIEIRECDAL 325
LE +DLR C L + + + CS+L++ P ++ ++L+K+++R C L
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 326 KSLP 329
LP
Sbjct: 291 SRLP 294
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAK 494
+ D T L+T+ +C N+ ++P+ L + + + ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
Length = 1086
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 629 YFPEKG-LPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVK 672
+FP+ G L + +LQ+Y LI+E +DG ++ T +PKV+
Sbjct: 712 FFPQIGRLYNDMLQMYAATSQLISEAVARDG----EIATKMPKVR 752
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 447 LETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLP-CAKLTRLEISYCKR 505
LE + ++E + P +NL L+ +G+ L P G + LT+L+IS K
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGL-RSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 506 LQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTI 565
+ +L +L +L+ L +G+ L I ++ +SL QLT+
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDND-----------------LVYISHRAFSGLNSLEQLTL 159
Query: 566 SGCDDDMVSFPPEDI 580
C ++ S P E +
Sbjct: 160 EKC--NLTSIPTEAL 172
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 35/143 (24%)
Query: 296 IYGCSSLVSFPEVALPSKLKK--IEIRECDALKSLPE--AWMCDTNSSLEILEIWICNSL 351
+ C+SL PE LP LK ++ AL LP ++ +N+ LE L +S
Sbjct: 97 VASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF 154
Query: 352 TYIAGV---------QLPPSLKWTLTVEEGIQXXXXXXXXXXXLLEGLHISRCPSLTCIF 402
I V LPPSL++ ++ E + P LT I+
Sbjct: 155 LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE-------------ELPELQNLPFLTAIY 201
Query: 403 SKN-------ELPATLESLEVGN 418
+ N +LP +LES+ GN
Sbjct: 202 ADNNSLKKLPDLPLSLESIVAGN 224
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 418 NLPPSLKSLDVWSCSELESIAE-RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGI 476
N PSL+ LD+ LE I+E + +L +++ C NLK +P+ L L +L+E+ +
Sbjct: 128 NRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLKDIPN-LTALVRLEELEL 185
Query: 477 WECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEED 536
+ P L +L + + + + +L SL++L + L SL D
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN-LMSLPHD 244
Query: 537 DGLPTNLHRLEIID-NKKIW 555
L T LHRLE + N W
Sbjct: 245 --LFTPLHRLERVHLNHNPW 262
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAK 494
+ D T L+T+ +C ++ ++P+ L + + + ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 553 KIWKFSSLRQL--TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSI 610
++ KFS ++++ T+SG + MV+ P + + T +P CL IG PN + LS +
Sbjct: 244 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL-WAIGRVPNTKDLSLNK 302
Query: 611 VDLQN 615
+ +Q
Sbjct: 303 LGIQT 307
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAK 494
+ D T L+T+ +C ++ ++P+ L + + + ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 553 KIWKFSSLRQL--TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSI 610
++ KFS ++++ T+SG + MV+ P + + T +P CL IG PN + LS +
Sbjct: 227 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL-WAIGRVPNTKDLSLNK 285
Query: 611 VDLQN 615
+ +Q
Sbjct: 286 LGIQT 290
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 553 KIWKFSSLRQL--TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSI 610
++ KFS ++++ T+SG + MV+ P + + T +P CL IG PN + LS +
Sbjct: 245 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL-WAIGRVPNTKDLSLNK 303
Query: 611 VDLQN 615
+ +Q
Sbjct: 304 LGIQT 308
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 553 KIWKFSSLRQL--TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSI 610
++ KFS ++++ T+SG + MV+ P + + T +P CL IG PN + LS +
Sbjct: 243 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL-WAIGRVPNTKDLSLNK 301
Query: 611 VDLQN 615
+ +Q
Sbjct: 302 LGIQT 306
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 553 KIWKFSSLRQL--TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSI 610
++ KFS ++++ T+SG + MV+ P + + T +P CL IG PN + LS +
Sbjct: 244 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL-WAIGRVPNTKDLSLNK 302
Query: 611 VDLQN 615
+ +Q
Sbjct: 303 LGIQT 307
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 418 NLPPSLKSLDVWSCSELESIAE-RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGI 476
N PSL+ LD+ LE I+E + +L +++ C NLK +P+ L L +L+E+ +
Sbjct: 128 NRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLKDIPN-LTALVRLEELEL 185
Query: 477 WECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEED 536
+ P L +L + + + + +L SL++L + L SL D
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN-LMSLPHD 244
Query: 537 DGLPTNLHRLEIID-NKKIW 555
L T LHRLE + N W
Sbjct: 245 --LFTPLHRLERVHLNHNPW 262
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 553 KIWKFSSLRQL--TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSI 610
++ KFS ++++ T+SG + MV+ P + + T +P CL IG PN + LS +
Sbjct: 244 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL-WAIGRVPNTKDLSLNK 302
Query: 611 VDLQN 615
+ +Q
Sbjct: 303 LGIQT 307
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 553 KIWKFSSLRQL--TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSI 610
++ KFS ++++ T+SG + MV+ P + + T +P CL IG PN + LS +
Sbjct: 244 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL-WAIGRVPNTKDLSLNK 302
Query: 611 VDLQN 615
+ +Q
Sbjct: 303 LGIQT 307
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 553 KIWKFSSLRQL--TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSI 610
++ KFS ++++ T+SG + MV+ P + + T +P CL IG PN + LS +
Sbjct: 229 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL-WAIGRVPNTKDLSLNK 287
Query: 611 VDLQN 615
+ +Q
Sbjct: 288 LGIQT 292
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 553 KIWKFSSLRQL--TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSI 610
++ KFS ++++ T+SG + MV+ P + + T +P CL IG PN + LS +
Sbjct: 227 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL-WAIGRVPNTKDLSLNK 285
Query: 611 VDLQN 615
+ +Q
Sbjct: 286 LGIQT 290
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 31/163 (19%)
Query: 493 AKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK 552
L RLE+S + L LTSLQQL+ G ++ L+ L T L RL+I N
Sbjct: 133 TNLNRLELSSNTISDI--SALSGLTSLQQLSFGN--QVTDLKPLANLTT-LERLDISSN- 186
Query: 553 KIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLS----- 607
K+ S L +LT ++ S + ++ PL G NL+ LS
Sbjct: 187 KVSDISVLAKLT------NLESLIATNNQISDITPL---------GILTNLDELSLNGNQ 231
Query: 608 ----SSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGG 646
++ L NLT L+L + P GL + L +L +G
Sbjct: 232 LKDIGTLASLTNLTDLDLANNQISNLAPLSGL-TKLTELKLGA 273
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 31/163 (19%)
Query: 493 AKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK 552
L RLE+S + L LTSLQQL+ G ++ L+ L T L RL+I N
Sbjct: 134 TNLNRLELSSNTISDI--SALSGLTSLQQLSFGN--QVTDLKPLANLTT-LERLDISSN- 187
Query: 553 KIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLS----- 607
K+ S L +LT ++ S + ++ PL G NL+ LS
Sbjct: 188 KVSDISVLAKLT------NLESLIATNNQISDITPL---------GILTNLDELSLNGNQ 232
Query: 608 ----SSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGG 646
++ L NLT L+L + P GL + L +L +G
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGL-TKLTELKLGA 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,915,831
Number of Sequences: 62578
Number of extensions: 805957
Number of successful extensions: 1519
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1502
Number of HSP's gapped (non-prelim): 34
length of query: 681
length of database: 14,973,337
effective HSP length: 105
effective length of query: 576
effective length of database: 8,402,647
effective search space: 4839924672
effective search space used: 4839924672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)