Query 045938
Match_columns 681
No_of_seqs 242 out of 2955
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 07:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.7E-35 7.9E-40 346.0 26.7 522 31-650 69-607 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-34 2.6E-39 341.7 26.1 504 53-651 68-585 (968)
3 PLN03210 Resistant to P. syrin 99.9 1.5E-23 3.3E-28 247.3 22.9 311 264-631 588-910 (1153)
4 KOG4194 Membrane glycoprotein 99.9 2.5E-24 5.5E-29 216.2 4.0 361 231-647 77-449 (873)
5 KOG4194 Membrane glycoprotein 99.9 1.9E-24 4.2E-29 217.0 2.6 358 204-623 78-448 (873)
6 PLN03210 Resistant to P. syrin 99.9 1.5E-21 3.2E-26 230.6 22.3 331 264-652 557-908 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 7.3E-24 1.6E-28 214.2 -5.4 342 225-652 25-377 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 4.5E-25 9.9E-30 212.2 -14.9 357 228-650 156-541 (565)
9 KOG0618 Serine/threonine phosp 99.8 1.4E-22 3.1E-27 214.5 -3.7 410 156-649 45-488 (1081)
10 KOG0444 Cytoskeletal regulator 99.8 1.6E-22 3.4E-27 204.6 -5.3 189 423-623 199-395 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 6.5E-24 1.4E-28 204.3 -15.9 475 8-568 47-538 (565)
12 KOG0618 Serine/threonine phosp 99.8 1.1E-22 2.5E-27 215.2 -9.7 271 229-553 216-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.6 2.4E-14 5.2E-19 157.5 15.0 260 265-629 201-460 (788)
14 PRK15387 E3 ubiquitin-protein 99.5 2.4E-13 5.1E-18 149.8 14.6 98 232-355 201-298 (788)
15 PRK15370 E3 ubiquitin-protein 99.4 6.6E-13 1.4E-17 147.2 10.3 160 422-625 263-426 (754)
16 PRK15370 E3 ubiquitin-protein 99.3 3.1E-12 6.7E-17 142.0 9.2 238 366-650 182-428 (754)
17 KOG4341 F-box protein containi 99.3 4.3E-14 9.4E-19 138.1 -6.1 283 32-353 139-441 (483)
18 KOG4237 Extracellular matrix p 99.3 2.5E-13 5.3E-18 131.8 -3.2 89 439-528 268-357 (498)
19 KOG4341 F-box protein containi 99.2 2.5E-13 5.3E-18 132.9 -4.4 308 156-526 138-461 (483)
20 KOG0617 Ras suppressor protein 99.2 3.1E-13 6.8E-18 116.0 -4.1 142 423-568 35-183 (264)
21 KOG0617 Ras suppressor protein 99.2 5.5E-13 1.2E-17 114.5 -3.2 154 465-632 29-190 (264)
22 cd00116 LRR_RI Leucine-rich re 99.2 2.5E-12 5.4E-17 132.3 -0.0 146 423-568 53-231 (319)
23 KOG4237 Extracellular matrix p 99.2 1.4E-12 2.9E-17 126.7 -2.3 225 416-650 62-359 (498)
24 cd00116 LRR_RI Leucine-rich re 99.2 3.3E-12 7.2E-17 131.4 -1.3 132 422-553 138-290 (319)
25 KOG4658 Apoptotic ATPase [Sign 98.9 1.9E-09 4.2E-14 121.8 5.3 107 203-322 544-652 (889)
26 KOG4658 Apoptotic ATPase [Sign 98.8 1.8E-09 3.9E-14 122.1 3.9 108 229-347 542-651 (889)
27 KOG3207 Beta-tubulin folding c 98.7 2E-09 4.3E-14 106.5 -0.5 183 440-625 141-337 (505)
28 KOG3207 Beta-tubulin folding c 98.7 3.4E-09 7.3E-14 105.0 0.6 201 440-649 116-338 (505)
29 PF14580 LRR_9: Leucine-rich r 98.4 1.1E-07 2.5E-12 86.0 2.5 77 423-504 21-99 (175)
30 KOG1259 Nischarin, modulator o 98.4 1.5E-07 3.2E-12 88.8 3.2 124 423-552 286-410 (490)
31 KOG0532 Leucine-rich repeat (L 98.4 1.5E-08 3.2E-13 103.7 -3.8 189 424-647 78-270 (722)
32 PRK15386 type III secretion pr 98.3 2E-06 4.4E-11 87.5 9.7 75 441-527 48-122 (426)
33 KOG1909 Ran GTPase-activating 98.3 2.5E-08 5.4E-13 96.3 -3.9 221 423-649 32-310 (382)
34 COG4886 Leucine-rich repeat (L 98.3 4.9E-07 1.1E-11 95.8 4.7 192 425-632 97-295 (394)
35 PRK15386 type III secretion pr 98.3 2.4E-06 5.3E-11 86.9 9.1 61 264-329 51-111 (426)
36 PF14580 LRR_9: Leucine-rich r 98.3 6.5E-07 1.4E-11 81.1 4.0 78 265-347 19-97 (175)
37 KOG1259 Nischarin, modulator o 98.3 1.8E-07 3.9E-12 88.3 0.3 118 494-625 285-410 (490)
38 KOG2120 SCF ubiquitin ligase, 98.2 3.2E-08 6.9E-13 93.3 -5.9 147 422-568 186-348 (419)
39 PLN03150 hypothetical protein; 98.2 1.5E-06 3.3E-11 96.6 6.0 107 447-553 420-527 (623)
40 KOG1909 Ran GTPase-activating 98.2 2.4E-07 5.2E-12 89.6 -0.5 213 434-652 19-285 (382)
41 KOG2120 SCF ubiquitin ligase, 98.2 5.9E-08 1.3E-12 91.5 -4.7 63 441-505 309-375 (419)
42 PLN03150 hypothetical protein; 98.2 1.8E-06 3.9E-11 96.0 5.6 111 423-533 420-531 (623)
43 COG4886 Leucine-rich repeat (L 98.1 1.1E-06 2.5E-11 93.0 3.1 163 423-600 118-287 (394)
44 PF13855 LRR_8: Leucine rich r 98.0 6E-06 1.3E-10 61.0 4.3 58 494-552 2-60 (61)
45 PF13855 LRR_8: Leucine rich r 98.0 1.2E-05 2.6E-10 59.4 5.1 9 423-431 3-11 (61)
46 KOG0532 Leucine-rich repeat (L 97.8 1.2E-06 2.6E-11 90.1 -3.3 139 423-568 100-244 (722)
47 KOG0531 Protein phosphatase 1, 97.7 7.2E-06 1.6E-10 87.1 -1.2 107 441-553 91-198 (414)
48 KOG2982 Uncharacterized conser 97.6 7.2E-05 1.6E-09 71.1 4.7 71 554-632 195-267 (418)
49 KOG1947 Leucine rich repeat pr 97.5 3.5E-06 7.5E-11 92.1 -5.9 110 53-169 187-308 (482)
50 KOG0531 Protein phosphatase 1, 97.5 2E-05 4.3E-10 83.7 -0.9 58 285-347 91-149 (414)
51 KOG1947 Leucine rich repeat pr 97.3 1.8E-05 4E-10 86.4 -3.2 178 134-349 187-373 (482)
52 KOG1859 Leucine-rich repeat pr 97.3 7.9E-06 1.7E-10 86.5 -5.9 195 441-652 80-294 (1096)
53 PF12799 LRR_4: Leucine Rich r 97.2 0.00031 6.6E-09 47.5 2.6 41 265-307 1-41 (44)
54 KOG3665 ZYG-1-like serine/thre 97.1 0.0001 2.2E-09 81.9 -0.3 83 84-169 122-208 (699)
55 KOG1859 Leucine-rich repeat pr 97.1 8.1E-06 1.8E-10 86.4 -8.9 123 423-553 166-291 (1096)
56 PF12799 LRR_4: Leucine Rich r 97.0 0.00084 1.8E-08 45.4 3.6 40 591-632 2-41 (44)
57 KOG2982 Uncharacterized conser 97.0 0.0002 4.4E-09 68.2 0.4 199 416-622 66-287 (418)
58 KOG3665 ZYG-1-like serine/thre 96.9 0.00031 6.8E-09 78.1 1.1 15 423-437 252-266 (699)
59 KOG1644 U2-associated snRNP A' 96.6 0.0035 7.6E-08 56.7 5.0 105 445-567 42-149 (233)
60 KOG1644 U2-associated snRNP A' 96.3 0.0054 1.2E-07 55.5 4.7 103 422-527 43-150 (233)
61 COG5238 RNA1 Ran GTPase-activa 96.1 0.0026 5.7E-08 60.0 1.6 37 612-648 270-314 (388)
62 KOG4579 Leucine-rich repeat (L 95.9 0.00078 1.7E-08 56.8 -2.5 103 519-632 29-140 (177)
63 KOG2123 Uncharacterized conser 95.8 0.00057 1.2E-08 64.6 -3.9 97 423-524 21-124 (388)
64 KOG4579 Leucine-rich repeat (L 95.6 0.0011 2.3E-08 56.0 -3.0 104 423-528 29-134 (177)
65 KOG2123 Uncharacterized conser 95.4 0.00048 1E-08 65.1 -6.0 50 517-568 19-73 (388)
66 COG5238 RNA1 Ran GTPase-activa 95.4 0.012 2.6E-07 55.7 2.9 40 417-457 89-132 (388)
67 KOG2739 Leucine-rich acidic nu 94.1 0.014 3E-07 55.3 -0.0 58 265-323 65-127 (260)
68 PF13306 LRR_5: Leucine rich r 93.9 0.23 5E-06 42.8 7.4 76 423-502 14-90 (129)
69 KOG2739 Leucine-rich acidic nu 93.9 0.03 6.6E-07 53.0 1.9 60 443-504 41-102 (260)
70 KOG3864 Uncharacterized conser 93.5 0.0074 1.6E-07 54.7 -2.8 62 83-147 124-188 (221)
71 PF13306 LRR_5: Leucine rich r 92.7 0.56 1.2E-05 40.3 7.9 103 440-550 7-112 (129)
72 KOG3864 Uncharacterized conser 92.6 0.013 2.9E-07 53.1 -2.5 96 20-126 92-189 (221)
73 PF13504 LRR_7: Leucine rich r 91.4 0.15 3.3E-06 26.3 1.6 17 614-631 1-17 (17)
74 PF00560 LRR_1: Leucine Rich R 89.6 0.21 4.5E-06 27.8 1.3 18 267-285 2-19 (22)
75 PF00560 LRR_1: Leucine Rich R 89.3 0.21 4.7E-06 27.8 1.2 12 447-458 2-13 (22)
76 smart00367 LRR_CC Leucine-rich 80.6 0.94 2E-05 26.4 1.1 17 112-128 1-17 (26)
77 smart00370 LRR Leucine-rich re 74.4 2.1 4.6E-05 24.8 1.4 20 613-633 1-20 (26)
78 smart00369 LRR_TYP Leucine-ric 74.4 2.1 4.6E-05 24.8 1.4 20 613-633 1-20 (26)
79 smart00364 LRR_BAC Leucine-ric 52.2 8.1 0.00018 22.5 0.9 19 5-23 1-19 (26)
80 KOG4308 LRR-containing protein 48.2 0.59 1.3E-05 50.2 -7.5 133 421-553 144-302 (478)
81 KOG3763 mRNA export factor TAP 46.1 14 0.0003 39.5 2.3 70 229-305 215-286 (585)
82 PF13516 LRR_6: Leucine Rich r 44.5 13 0.00027 20.9 1.0 14 423-436 4-17 (24)
83 smart00365 LRR_SD22 Leucine-ri 31.4 42 0.00091 19.6 1.8 17 614-631 2-18 (26)
84 PF05725 FNIP: FNIP Repeat; I 28.4 97 0.0021 20.6 3.4 31 614-645 12-42 (44)
85 KOG3763 mRNA export factor TAP 25.6 27 0.00058 37.5 0.5 65 419-484 217-285 (585)
86 smart00368 LRR_RI Leucine rich 20.9 59 0.0013 19.2 1.1 14 445-458 2-15 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-35 Score=346.05 Aligned_cols=522 Identities=16% Similarity=0.169 Sum_probs=369.8
Q ss_pred cceeEEEEeecCCCCCCCC-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccc
Q 045938 31 LKLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGV 109 (681)
Q Consensus 31 ~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 109 (681)
.+++.|++++++--..+++ +..+++|+.|+++++.--..++...+.. +.+|++|++++..- ..... .
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~-----l~~L~~L~Ls~n~l-~~~~p------~ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT-----SSSLRYLNLSNNNF-TGSIP------R 136 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhcc-----CCCCCEEECcCCcc-ccccC------c
Confidence 4788999988643233443 8889999999998886223566555433 78899999987532 22111 2
Q ss_pred cccCCcceEeeccCccccccCCC---CCCCccEEEEccCCC---ceeecCCCCcccEEEECCCCCceee-ccccccCCCC
Q 045938 110 ERFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEE---LLVSVSSLPSLCKFIIGGCKKIVWE-SATGHLGSQN 182 (681)
Q Consensus 110 ~~~~~L~~L~l~~c~~l~~~~~~---~l~~L~~L~i~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~ 182 (681)
..+++|++|++++| .+.+.+|. .+++|++|++++|.. ....+..+++|++|++++|...... ..
T Consensus 137 ~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-------- 207 (968)
T PLN00113 137 GSIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-------- 207 (968)
T ss_pred cccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH--------
Confidence 35889999999886 34445554 468899999988753 2335667889999999888643211 10
Q ss_pred cceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhh
Q 045938 183 SVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQ 262 (681)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~ 262 (681)
...+.+|++|.+.++.... .....+..+++|++|++++|.....+|.. +.
T Consensus 208 -----------------l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~---- 257 (968)
T PLN00113 208 -----------------LGQMKSLKWIYLGYNNLSG----EIPYEIGGLTSLNHLDLVYNNLTGPIPSS-----LG---- 257 (968)
T ss_pred -----------------HcCcCCccEEECcCCccCC----cCChhHhcCCCCCEEECcCceeccccChh-----Hh----
Confidence 0135677777777654322 22334578899999999987433333332 22
Q ss_pred ccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC-CCCCCCceEEEEecCCCCCccccccccCCCCccc
Q 045938 263 LSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLE 341 (681)
Q Consensus 263 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 341 (681)
.+++|++|++++|...+.+|..+..+++|++|++++|.....+|. ...+++|++|++++|.....+|..+ ..+++|+
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~ 335 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQ 335 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCC
Confidence 348899999999888777888888899999999998864444443 3457889999999988666666655 6788999
Q ss_pred eeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938 342 ILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP 421 (681)
Q Consensus 342 ~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 421 (681)
.|++++|.-...++.. ....++|+.|+++++. +.. .++.. +..++.
T Consensus 336 ~L~L~~n~l~~~~p~~-----------------------l~~~~~L~~L~Ls~n~-l~~-----~~p~~-----~~~~~~ 381 (968)
T PLN00113 336 VLQLWSNKFSGEIPKN-----------------------LGKHNNLTVLDLSTNN-LTG-----EIPEG-----LCSSGN 381 (968)
T ss_pred EEECcCCCCcCcCChH-----------------------HhCCCCCcEEECCCCe-eEe-----eCChh-----HhCcCC
Confidence 9999886433222211 0112357888877743 221 11111 223333
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
++.|++++|...+.+|..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.....++..+..+++|+.|+++
T Consensus 382 -L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 382 -LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred -CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 8888888888877788888888899999999988888888888888899999998888666666666678889999999
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCc-
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMV- 573 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~- 573 (681)
+|.....+|..+ ..++|+.|++++|...+.+|..++.+++|++|++++|.. +.++++|++|++++| .+.
T Consensus 461 ~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~ 537 (968)
T PLN00113 461 RNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN--QLSG 537 (968)
T ss_pred CceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC--cccc
Confidence 988777776654 457889999998888878887788888899999998876 347888999999986 343
Q ss_pred CCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhH
Q 045938 574 SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI 650 (681)
Q Consensus 574 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 650 (681)
.+|... ..+++|++|+++++.-...+|..+..+++|+.|++++|+....+|..+.+.++....+.+|+.+
T Consensus 538 ~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 538 QIPASF-------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred cCChhH-------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 344433 4667899999998755557888888999999999999987778887655555555556666644
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-34 Score=341.67 Aligned_cols=504 Identities=19% Similarity=0.160 Sum_probs=382.8
Q ss_pred CCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCCC
Q 045938 53 LPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPE 132 (681)
Q Consensus 53 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 132 (681)
..+++.|+++++. +.......+.. +++|+.|+++++. +........ ...+++|++|+++++ ++.+.+|.
T Consensus 68 ~~~v~~L~L~~~~-i~~~~~~~~~~-----l~~L~~L~Ls~n~-~~~~ip~~~---~~~l~~L~~L~Ls~n-~l~~~~p~ 136 (968)
T PLN00113 68 SSRVVSIDLSGKN-ISGKISSAIFR-----LPYIQTINLSNNQ-LSGPIPDDI---FTTSSSLRYLNLSNN-NFTGSIPR 136 (968)
T ss_pred CCcEEEEEecCCC-ccccCChHHhC-----CCCCCEEECCCCc-cCCcCChHH---hccCCCCCEEECcCC-ccccccCc
Confidence 3578999998875 54443333333 8999999998853 221111111 236899999999986 44446664
Q ss_pred -CCCCccEEEEccCCCc---eeecCCCCcccEEEECCCCCcee-eccccccCCCCcceeecCCCcccccCCCCCCCCCcc
Q 045938 133 -HLPALEMLVIEGCEEL---LVSVSSLPSLCKFIIGGCKKIVW-ESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE 207 (681)
Q Consensus 133 -~l~~L~~L~i~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 207 (681)
.+++|++|++++|... ...++.+++|++|++++|..... +.. ...+++|+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-------------------------~~~l~~L~ 191 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-------------------------LTNLTSLE 191 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-------------------------hhhCcCCC
Confidence 5799999999998642 23567799999999999874321 111 01367888
Q ss_pred eEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCC
Q 045938 208 ELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLS 287 (681)
Q Consensus 208 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~ 287 (681)
+|++.++..... ....+..+++|+.|+++++.-...+|.. +. .+++|++|++++|...+.+|..++.
T Consensus 192 ~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~----~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 192 FLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGEIPYE-----IG----GLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred eeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCcCChh-----Hh----cCCCCCEEECcCceeccccChhHhC
Confidence 888887754322 2344688999999999998544344433 22 3489999999999987789999999
Q ss_pred CCCcceEEEeCCCCceeec-CCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeE
Q 045938 288 LSSLREIEIYGCSSLVSFP-EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWT 366 (681)
Q Consensus 288 l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~ 366 (681)
+++|++|++++|.....+| ....+++|++|++++|.....+|..+ ..+++|+.|++++|.....++..
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~--------- 327 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVA--------- 327 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChh---------
Confidence 9999999999887443444 34558999999999998655677665 78899999999886433222210
Q ss_pred EEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCC
Q 045938 367 LTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTS 446 (681)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~ 446 (681)
....++|++|+++++.--.. +|.. ++.++. |+.|++++|...+.+|..+..+++
T Consensus 328 --------------~~~l~~L~~L~L~~n~l~~~------~p~~-----l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 328 --------------LTSLPRLQVLQLWSNKFSGE------IPKN-----LGKHNN-LTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred --------------HhcCCCCCEEECcCCCCcCc------CChH-----HhCCCC-CcEEECCCCeeEeeCChhHhCcCC
Confidence 11234689999888542211 1211 445555 999999999888888888999999
Q ss_pred ccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecc
Q 045938 447 LETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE 526 (681)
Q Consensus 447 L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 526 (681)
|+.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.....++..+..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 99999999999999999999999999999999987778888888899999999999998888888888899999999999
Q ss_pred cCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecc
Q 045938 527 GGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGN 599 (681)
Q Consensus 527 ~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~ 599 (681)
|...+.+|..+ ..++|+.|++++|+. +.++++|+.|++++|. ....+|... ..+++|++|++++
T Consensus 462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~-------~~l~~L~~L~Ls~ 532 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-LSGEIPDEL-------SSCKKLVSLDLSH 532 (968)
T ss_pred ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCc-ceeeCChHH-------cCccCCCEEECCC
Confidence 99888777744 468999999999987 3478899999999972 233556554 4678999999999
Q ss_pred cCCcccccccccCCCCCCEEeecCCCCCcccCCC-CCcccccEEEeCCchhHH
Q 045938 600 FPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLIA 651 (681)
Q Consensus 600 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~ 651 (681)
+.-...+|..+..+++|+.|++++|.....+|.. ..+++|++|++++|+...
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 8555577888999999999999999777778874 457899999999998553
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.5e-23 Score=247.34 Aligned_cols=311 Identities=24% Similarity=0.324 Sum_probs=172.5
Q ss_pred cCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC-CCCCCCceEEEEecCCCCCccccccccCCCCccce
Q 045938 264 SCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEI 342 (681)
Q Consensus 264 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 342 (681)
+++|+.|++.+++. +.+|..+ .+.+|++|++.++. +..++. ...+++|+.|+++++..+..+|.. ..+++|+.
T Consensus 588 p~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~ 661 (1153)
T PLN03210 588 PPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLET 661 (1153)
T ss_pred CcccEEEEecCCCC-CCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccE
Confidence 34566666666554 5555544 35566666666543 444432 233566666666666555555543 45566666
Q ss_pred eeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCC
Q 045938 343 LEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPS 422 (681)
Q Consensus 343 L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 422 (681)
|++++|..+..+|..- . ..++|+.|++++|.+++. ++. ...++ +
T Consensus 662 L~L~~c~~L~~lp~si--~---------------------~L~~L~~L~L~~c~~L~~-Lp~-----------~i~l~-s 705 (1153)
T PLN03210 662 LKLSDCSSLVELPSSI--Q---------------------YLNKLEDLDMSRCENLEI-LPT-----------GINLK-S 705 (1153)
T ss_pred EEecCCCCccccchhh--h---------------------ccCCCCEEeCCCCCCcCc-cCC-----------cCCCC-C
Confidence 6666666555544220 0 011344444444444443 110 00111 2
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCce------ec-CCCCCCCCCc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLV------SF-PQGGLPCAKL 495 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~------~l-~~~~~~~~~L 495 (681)
|+.|++++|..+..+|. ..++|++|++++|.+. .+|..+ .+++|+.|.+.++.... .+ +.....+++|
T Consensus 706 L~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 55555555544433331 1234455555554432 233332 24555555554432110 00 0111223566
Q ss_pred ceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCccccc----CCcccEEEEeccCCC
Q 045938 496 TRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWK----FSSLRQLTISGCDDD 571 (681)
Q Consensus 496 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----l~~L~~L~l~~~~~~ 571 (681)
+.|++++|.....+|..++.+++|+.|++++|..++.+|..+ .+++|+.|++++|..+.. .++|+.|++++| .
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n--~ 857 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT--G 857 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC--C
Confidence 777777766666666666667777777777666666666533 566677777776665433 246777777776 5
Q ss_pred CcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938 572 MVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP 631 (681)
Q Consensus 572 ~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 631 (681)
++.+|... ..+++|+.|++.+|++++.+|..+..+++|+.+++++|+.++.++
T Consensus 858 i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 858 IEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 66677654 466778888888888888888877788888888888888777543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.5e-24 Score=216.20 Aligned_cols=361 Identities=16% Similarity=0.197 Sum_probs=261.8
Q ss_pred cccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec--CC
Q 045938 231 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP--EV 308 (681)
Q Consensus 231 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~ 308 (681)
.+.-+.|++++. .+..+.... +..+ ++|+.+++..|.. ..+|...+...+|+.|+|..|- +..+. .+
T Consensus 77 p~~t~~LdlsnN-kl~~id~~~----f~nl----~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L~~N~-I~sv~se~L 145 (873)
T KOG4194|consen 77 PSQTQTLDLSNN-KLSHIDFEF----FYNL----PNLQEVNLNKNEL-TRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL 145 (873)
T ss_pred ccceeeeecccc-ccccCcHHH----HhcC----Ccceeeeeccchh-hhcccccccccceeEEeeeccc-cccccHHHH
Confidence 456677888875 666544332 2333 8888888888765 7778766666678888888664 66554 34
Q ss_pred CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcc
Q 045938 309 ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLE 388 (681)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~ 388 (681)
..++.|++||++.|. +..++...+ ..-+++++|++++ +.++.+....+. + +.+|.
T Consensus 146 ~~l~alrslDLSrN~-is~i~~~sf-p~~~ni~~L~La~-N~It~l~~~~F~-~---------------------lnsL~ 200 (873)
T KOG4194|consen 146 SALPALRSLDLSRNL-ISEIPKPSF-PAKVNIKKLNLAS-NRITTLETGHFD-S---------------------LNSLL 200 (873)
T ss_pred HhHhhhhhhhhhhch-hhcccCCCC-CCCCCceEEeecc-cccccccccccc-c---------------------cchhe
Confidence 457888888888876 666665543 4456788888887 455554332211 1 11366
Q ss_pred eeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCc
Q 045938 389 GLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNL 468 (681)
Q Consensus 389 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l 468 (681)
.|.+++ +.++. ++ .. .+..+|. |+.|++.+|++-..-...|.++++|+.|.+..|.+...--+.|..+
T Consensus 201 tlkLsr-Nritt-Lp-----~r----~Fk~L~~-L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 201 TLKLSR-NRITT-LP-----QR----SFKRLPK-LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred eeeccc-Ccccc-cC-----HH----Hhhhcch-hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 666666 33333 11 10 1555777 9999999986544335678899999999999998876656667789
Q ss_pred ccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938 469 RQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE 547 (681)
Q Consensus 469 ~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 547 (681)
.++++|++..|+. ..+.. +++.+.+|+.|++++|..-+.-+++++.+++|++|++++|....--+.++..+..|++|.
T Consensus 269 ~kme~l~L~~N~l-~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 269 EKMEHLNLETNRL-QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred cccceeecccchh-hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 9999999998874 44444 567889999999999998777788899999999999999997777777788899999999
Q ss_pred eecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEE
Q 045938 548 IIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHL 619 (681)
Q Consensus 548 l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L 619 (681)
|++|.+ +..+.+|++|+|++| .+....++ .+..-..+++|++|++.++ +++.+++ .|..+++|++|
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N--~ls~~IED---aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSN--ELSWCIED---AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCC--eEEEEEec---chhhhccchhhhheeecCc-eeeecchhhhccCccccee
Confidence 999987 458999999999997 44332222 2333345789999999994 8999997 78889999999
Q ss_pred eecCCCCCcccCCCCC-cccccEEEeCCc
Q 045938 620 ELEDCPKLKYFPEKGL-PSSLLQLYIGGC 647 (681)
Q Consensus 620 ~l~~c~~l~~l~~~~~-~~~L~~L~i~~c 647 (681)
++.+| -+.++-.+++ ...|++|.+..-
T Consensus 422 dL~~N-aiaSIq~nAFe~m~Lk~Lv~nSs 449 (873)
T KOG4194|consen 422 DLGDN-AIASIQPNAFEPMELKELVMNSS 449 (873)
T ss_pred cCCCC-cceeecccccccchhhhhhhccc
Confidence 99997 5666655444 338888887753
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-24 Score=217.04 Aligned_cols=358 Identities=18% Similarity=0.224 Sum_probs=271.6
Q ss_pred CCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCC
Q 045938 204 PKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQ 283 (681)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~ 283 (681)
+.-+.|++++..-.. ....++..+++|+.+++.+. .++.+|... ..-.+|+.|++..|.+...-.+
T Consensus 78 ~~t~~LdlsnNkl~~----id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~---------~~sghl~~L~L~~N~I~sv~se 143 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSH----IDFEFFYNLPNLQEVNLNKN-ELTRIPRFG---------HESGHLEKLDLRHNLISSVTSE 143 (873)
T ss_pred cceeeeecccccccc----CcHHHHhcCCcceeeeeccc-hhhhccccc---------ccccceeEEeeeccccccccHH
Confidence 344567777654222 34556789999999999985 777777663 1226799999999877444445
Q ss_pred CCCCCCCcceEEEeCCCCceeecCCCCC--CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCC
Q 045938 284 SPLSLSSLREIEIYGCSSLVSFPEVALP--SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPP 361 (681)
Q Consensus 284 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 361 (681)
.+..++.|+.|||+.|. +..++...++ .++++|++++|. ++.+....+ ..+.+|-.|.++. +.++.+|...+.
T Consensus 144 ~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsr-NrittLp~r~Fk- 218 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSR-NRITTLPQRSFK- 218 (873)
T ss_pred HHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeeccc-CcccccCHHHhh-
Confidence 67778999999999865 7777655553 579999999987 666655544 6677888999987 566666543221
Q ss_pred CceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhc
Q 045938 362 SLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERL 441 (681)
Q Consensus 362 ~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l 441 (681)
+ .++|+.|++.. +.++. ++.+.+..+|+ |+.|.+.+|.+..---..|
T Consensus 219 ~---------------------L~~L~~LdLnr-N~iri----------ve~ltFqgL~S-l~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 219 R---------------------LPKLESLDLNR-NRIRI----------VEGLTFQGLPS-LQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred h---------------------cchhhhhhccc-cceee----------ehhhhhcCchh-hhhhhhhhcCcccccCcce
Confidence 1 23577777665 22222 11112666777 9999999987655444568
Q ss_pred ccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcce
Q 045938 442 DNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQ 521 (681)
Q Consensus 442 ~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 521 (681)
-.+.++++|+++.|.+...-.+++.++..|+.|+++.|.....-+.++..+++|++|++++|...+.-+..+..+..|++
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEE 345 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhh
Confidence 89999999999999998877888899999999999998865555668889999999999999976666668888999999
Q ss_pred eeecccCCCCCccccCCCCCCCceeeeecCcc----------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccc
Q 045938 522 LTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK----------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPAC 591 (681)
Q Consensus 522 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 591 (681)
|.++.|.....-...|..+++|++|||+.|.+ +..+++|+.|.+.|| .+..+|.-.+ ..++.
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN--qlk~I~krAf------sgl~~ 417 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN--QLKSIPKRAF------SGLEA 417 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc--eeeecchhhh------ccCcc
Confidence 99999986555455688899999999999987 337999999999998 8888988776 68889
Q ss_pred cceeEecccCCccccc-ccccCCCCCCEEeecC
Q 045938 592 LASLMIGNFPNLERLS-SSIVDLQNLTHLELED 623 (681)
Q Consensus 592 L~~l~l~~~~~l~~l~-~~~~~~~~L~~L~l~~ 623 (681)
|+.|+++++ .+.++. ..|..+ +|++|.+..
T Consensus 418 LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 418 LEHLDLGDN-AIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cceecCCCC-cceeecccccccc-hhhhhhhcc
Confidence 999999996 566664 467777 899888865
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.5e-21 Score=230.65 Aligned_cols=331 Identities=22% Similarity=0.316 Sum_probs=246.9
Q ss_pred cCCccEEeeeCCc------CcccCCCCCCCCC-CcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCC
Q 045938 264 SCILEYIDLRDCQ------DLVKLPQSPLSLS-SLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDT 336 (681)
Q Consensus 264 ~~~L~~L~l~~~~------~~~~l~~~~~~l~-~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 336 (681)
+++|+.|.+..+. ....+|..+..++ +|+.|++.+++ ++.+|....+.+|+.|++.++. +..++... ..
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~--~~ 632 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSK-LEKLWDGV--HS 632 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCcc-cccccccc--cc
Confidence 3677777775432 1123555555543 57888887765 6677766567778888887765 66666655 56
Q ss_pred CCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhccc
Q 045938 337 NSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEV 416 (681)
Q Consensus 337 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 416 (681)
+++|+.++++++..++.++... ..++|++|++++|..+.. ++ .. +
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls------------------------~l~~Le~L~L~~c~~L~~-lp-----~s-----i 677 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLS------------------------MATNLETLKLSDCSSLVE-LP-----SS-----I 677 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccc------------------------cCCcccEEEecCCCCccc-cc-----hh-----h
Confidence 7788888887776666555321 234688999988887766 22 11 3
Q ss_pred CCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcc
Q 045938 417 GNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT 496 (681)
Q Consensus 417 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 496 (681)
..++. |+.|++++|..++.+|..+ ++++|+.|++++|.....+|.. ..+|+.|+++++. +..+|... .+++|+
T Consensus 678 ~~L~~-L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~ 750 (1153)
T PLN03210 678 QYLNK-LEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLD 750 (1153)
T ss_pred hccCC-CCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccc
Confidence 44555 9999999998888877544 7889999999999877766643 4678899998876 56777644 578899
Q ss_pred eEeecccccccc-------ccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccc------cCCcccEE
Q 045938 497 RLEISYCKRLQV-------LPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIW------KFSSLRQL 563 (681)
Q Consensus 497 ~L~l~~~~~l~~-------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~l~~L~~L 563 (681)
+|++.++..... .+......++|+.|++++|.....+|..++.+++|+.|++++|..+. ++++|+.|
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L 830 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESL 830 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEE
Confidence 888877542111 11122345789999999999999999999999999999999997633 57899999
Q ss_pred EEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC-CCcccccEE
Q 045938 564 TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQL 642 (681)
Q Consensus 564 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L 642 (681)
++++| ..+..+|. .+++|+.|++.+ ..++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+
T Consensus 831 ~Ls~c-~~L~~~p~----------~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 831 DLSGC-SRLRTFPD----------ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred ECCCC-Cccccccc----------cccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 99995 45666665 457899999998 489999999999999999999999999999874 457899999
Q ss_pred EeCCchhHHh
Q 045938 643 YIGGCPLIAE 652 (681)
Q Consensus 643 ~i~~c~~l~~ 652 (681)
++++|+.++.
T Consensus 899 ~l~~C~~L~~ 908 (1153)
T PLN03210 899 DFSDCGALTE 908 (1153)
T ss_pred ecCCCccccc
Confidence 9999998875
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=7.3e-24 Score=214.22 Aligned_cols=342 Identities=19% Similarity=0.247 Sum_probs=213.0
Q ss_pred cccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCcee
Q 045938 225 NELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVS 304 (681)
Q Consensus 225 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~ 304 (681)
+..+..+++++-|.+.. .++..+|.. +..+ .+|++|.++.|.. ..+...+..++.|+.+++..|. ++.
T Consensus 25 P~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN~L-~~vhGELs~Lp~LRsv~~R~N~-LKn 92 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHNQL-ISVHGELSDLPRLRSVIVRDNN-LKN 92 (1255)
T ss_pred chhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhhhh-HhhhhhhccchhhHHHhhhccc-ccc
Confidence 34456677777777775 366666655 2222 6677777777655 5555566667777777777655 322
Q ss_pred --ec-CCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccc
Q 045938 305 --FP-EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRR 381 (681)
Q Consensus 305 --~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 381 (681)
+| ++..+..|..||+++|+ +..+|... ..-.++-.|++++ ++++.+|..-+
T Consensus 93 sGiP~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~-N~IetIPn~lf---------------------- 146 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSY-NNIETIPNSLF---------------------- 146 (1255)
T ss_pred CCCCchhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEccc-CccccCCchHH----------------------
Confidence 33 33346667777777765 66666655 4555666666665 34544442111
Q ss_pred cCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccc
Q 045938 382 YTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKIL 461 (681)
Q Consensus 382 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~ 461 (681)
-++++ |-.|++++| .++.+|+.+..+.+|++|++++|.+.-.-
T Consensus 147 --------------inLtD----------------------LLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 147 --------------INLTD----------------------LLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred --------------HhhHh----------------------Hhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 11111 455666655 45556666666667777777766654322
Q ss_pred cCcCcCcccccEEeeccCCC-ceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCC
Q 045938 462 PSGLHNLRQLQEIGIWECEN-LVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLP 540 (681)
Q Consensus 462 ~~~l~~l~~L~~L~l~~~~~-l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 540 (681)
-.-+.++.+|++|.+++.+- +..+|..+..+.+|..+|++.|. +..+|..+..+++|+.|++++|...+ +....+..
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W 267 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEW 267 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceee-eeccHHHH
Confidence 22233455566666665332 23466666666667777776655 45566666666777777777665332 22234555
Q ss_pred CCCceeeeecCcc------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCC
Q 045938 541 TNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQ 614 (681)
Q Consensus 541 ~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~ 614 (681)
.+|++|+++.|+. +.++++|+.|.+.+|...++.+|... .-+..|+.++..+ ++|+-.|.++..|+
T Consensus 268 ~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI-------GKL~~Levf~aan-N~LElVPEglcRC~ 339 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI-------GKLIQLEVFHAAN-NKLELVPEGLCRCV 339 (1255)
T ss_pred hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccch-------hhhhhhHHHHhhc-cccccCchhhhhhH
Confidence 6677777777765 44677777777777777777888776 4666777777776 47777888888888
Q ss_pred CCCEEeecCCCCCcccCCC-CCcccccEEEeCCchhHHh
Q 045938 615 NLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLIAE 652 (681)
Q Consensus 615 ~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~ 652 (681)
.|+.|.+++| .+..+|+. .+++-|+.||++.||.+--
T Consensus 340 kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 340 KLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred HHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccC
Confidence 8888888775 67777763 6778888888888887654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=4.5e-25 Score=212.17 Aligned_cols=357 Identities=22% Similarity=0.261 Sum_probs=232.8
Q ss_pred ccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC
Q 045938 228 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE 307 (681)
Q Consensus 228 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~ 307 (681)
+..+.+|..+++.+. .++.+++...+ +..|++|+...|-. +.+|+.++.+.+|..|++..|. +..+|.
T Consensus 156 ~~~~~~l~~l~~~~n-~l~~l~~~~i~---------m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe 223 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGN-KLKALPENHIA---------MKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNK-IRFLPE 223 (565)
T ss_pred HHHHHHHHHhhcccc-chhhCCHHHHH---------HHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcc-cccCCC
Confidence 356667777777764 56666655322 26677777766544 7888888899999999998765 888888
Q ss_pred CCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCc
Q 045938 308 VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLL 387 (681)
Q Consensus 308 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L 387 (681)
...|+.|+++.+..|. ++.+|.... .+++++.+|++.+ ++++++|.... -..+|
T Consensus 224 f~gcs~L~Elh~g~N~-i~~lpae~~-~~L~~l~vLDLRd-Nklke~Pde~c-----------------------lLrsL 277 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQ-IEMLPAEHL-KHLNSLLVLDLRD-NKLKEVPDEIC-----------------------LLRSL 277 (565)
T ss_pred CCccHHHHHHHhcccH-HHhhHHHHh-cccccceeeeccc-cccccCchHHH-----------------------Hhhhh
Confidence 8888889999888876 777776653 5788888888887 57776664321 11136
Q ss_pred ceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCC---CccEEE-------eecccC
Q 045938 388 EGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNT---SLETIS-------ISECEN 457 (681)
Q Consensus 388 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~---~L~~L~-------ls~~~~ 457 (681)
++|++++. .++. +|.. ++.+ + |+.|-+.||..-+ +...+.+.. -|++|. ++....
T Consensus 278 ~rLDlSNN-~is~------Lp~s-----Lgnl-h-L~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 278 ERLDLSNN-DISS------LPYS-----LGNL-H-LKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred hhhcccCC-cccc------CCcc-----cccc-e-eeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 66666652 2222 1111 3334 2 6666666664322 211111111 011110 000000
Q ss_pred c----cccc----CcCcCcccccEEeeccCCCceecCCCCCCCCC---cceEeeccccccccccccCcccCCcceeeecc
Q 045938 458 L----KILP----SGLHNLRQLQEIGIWECENLVSFPQGGLPCAK---LTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE 526 (681)
Q Consensus 458 ~----~~~~----~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~---L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 526 (681)
. ...+ .........+.|++++-+ ++.+|...+.... .+..+++.|+ +..+|..+..+..+...-+..
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhh
Confidence 0 0001 112335677788888644 5567765443333 7788888877 577888887777766666666
Q ss_pred cCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEeccc
Q 045938 527 GGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNF 600 (681)
Q Consensus 527 ~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~ 600 (681)
+...+.+|..++.+++|.-|++++|.. .+.+..|+.|+++.| .+..+|.-. -.+..++.+-.++
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N--rFr~lP~~~-------y~lq~lEtllas~- 490 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN--RFRMLPECL-------YELQTLETLLASN- 490 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc--ccccchHHH-------hhHHHHHHHHhcc-
Confidence 666777888889999999999999876 567788999999998 777777643 1233444443443
Q ss_pred CCcccccc-cccCCCCCCEEeecCCCCCcccCCC-CCcccccEEEeCCchhH
Q 045938 601 PNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLI 650 (681)
Q Consensus 601 ~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l 650 (681)
..+..++. ++.++.+|++|++.+| .++.+|.. +.+.+|+.|++.|||.-
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCccC
Confidence 57788876 5889999999999886 78888874 88999999999999853
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-22 Score=214.49 Aligned_cols=410 Identities=19% Similarity=0.176 Sum_probs=244.7
Q ss_pred CcccEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeeccccccccccccc
Q 045938 156 PSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLK 235 (681)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 235 (681)
.+|+.|+++++.....+... -.+++|+.|.++....-. . +....++.+|+
T Consensus 45 v~L~~l~lsnn~~~~fp~~i-------------------------t~l~~L~~ln~s~n~i~~----v-p~s~~~~~~l~ 94 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQI-------------------------TLLSHLRQLNLSRNYIRS----V-PSSCSNMRNLQ 94 (1081)
T ss_pred eeeEEeeccccccccCCchh-------------------------hhHHHHhhcccchhhHhh----C-chhhhhhhcch
Confidence 34888888877754433221 023455555554432111 2 24457788888
Q ss_pred EEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCce
Q 045938 236 RLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLK 315 (681)
Q Consensus 236 ~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~ 315 (681)
.+.|.+ ..+..+|++ +.. ..+|++|+++.|.. ..+|..+..+..+..+..++|..+..++... .+
T Consensus 95 ~lnL~~-n~l~~lP~~-----~~~----lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik 159 (1081)
T KOG0618|consen 95 YLNLKN-NRLQSLPAS-----ISE----LKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IK 159 (1081)
T ss_pred hheecc-chhhcCchh-----HHh----hhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcccc----ch
Confidence 888885 467777665 222 27788888888776 6777777777777777777764343333222 44
Q ss_pred EEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccC
Q 045938 316 KIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRC 395 (681)
Q Consensus 316 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 395 (681)
.+++..+.....++... ..+.. .+++.++. +... ...... .+..-.|....-..-....++++.|+.+++
T Consensus 160 ~~~l~~n~l~~~~~~~i--~~l~~--~ldLr~N~-~~~~-dls~~~----~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n 229 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDI--YNLTH--QLDLRYNE-MEVL-DLSNLA----NLEVLHCERNQLSELEISGPSLTALYADHN 229 (1081)
T ss_pred hhhhhhhhcccchhcch--hhhhe--eeecccch-hhhh-hhhhcc----chhhhhhhhcccceEEecCcchheeeeccC
Confidence 55554444333333222 22222 24444421 1100 000000 011111110000000112234556655554
Q ss_pred CCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEe
Q 045938 396 PSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIG 475 (681)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~ 475 (681)
+-.+. . ....|.++++++++.+. ...+|.+++.+.+|+.+++.+|.+. .+|..+....+|+.+.
T Consensus 230 ~l~~~-~-------------~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 230 PLTTL-D-------------VHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS 293 (1081)
T ss_pred cceee-c-------------cccccccceeeecchhh-hhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence 43321 0 33445667777777764 4445677777777777777777663 3344444445555555
Q ss_pred eccCCCceecCCCCCCCCCcceEeeccccc------------------------cccccc-cCcccCCcceeeecccCCC
Q 045938 476 IWECENLVSFPQGGLPCAKLTRLEISYCKR------------------------LQVLPK-GLHNLTSLQQLTIGEGGEL 530 (681)
Q Consensus 476 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~------------------------l~~~~~-~l~~l~~L~~L~l~~~~~~ 530 (681)
+..|. +..+|........|+.|++..|.. +...|. +-..++.|+.|.+.+|...
T Consensus 294 ~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 294 AAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 55444 334444444445555555555432 122221 1223566889999999988
Q ss_pred CCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCc
Q 045938 531 PSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNL 603 (681)
Q Consensus 531 ~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l 603 (681)
+...+.+.++.+|+.|++++|.. +.+++.|++|+++|| ++..+|... .....|++|+..++ .|
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN--kL~~Lp~tv-------a~~~~L~tL~ahsN-~l 442 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN--KLTTLPDTV-------ANLGRLHTLRAHSN-QL 442 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc--hhhhhhHHH-------HhhhhhHHHhhcCC-ce
Confidence 87767799999999999999975 458899999999998 888898766 57788999988884 88
Q ss_pred ccccccccCCCCCCEEeecCCCCCcccCC-CCCc-ccccEEEeCCchh
Q 045938 604 ERLSSSIVDLQNLTHLELEDCPKLKYFPE-KGLP-SSLLQLYIGGCPL 649 (681)
Q Consensus 604 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~-~~L~~L~i~~c~~ 649 (681)
..+| .+.+++.|+.+|++.| .++.+.- ...+ ++|++||++||+.
T Consensus 443 ~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 443 LSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred eech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 8999 7889999999999987 6666433 2344 8999999999985
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.6e-22 Score=204.64 Aligned_cols=189 Identities=21% Similarity=0.267 Sum_probs=148.4
Q ss_pred CcEEEEcCCCCc-hhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 423 LKSLDVWSCSEL-ESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
|+.|.+++.+.+ ..+|..+..+.+|+.+|+|.|.+. .+|+.+.++++|+.|++++|. ++.+......-.+|++|+++
T Consensus 199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLS 276 (1255)
T ss_pred hhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccc
Confidence 777788876654 457888899999999999988765 457778889999999999887 55666655556789999999
Q ss_pred cccccccccccCcccCCcceeeecccCCC-CCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcC
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGEL-PSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVS 574 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~ 574 (681)
.|+ +..+|..+..+++|+.|.+.+|... +.+|+.+|.+.+|+++..++|.. +..|++|+.|.+++| .+..
T Consensus 277 rNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N--rLiT 353 (1255)
T KOG0444|consen 277 RNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN--RLIT 353 (1255)
T ss_pred cch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc--ceee
Confidence 987 6778999999999999999888754 45788899999999999998886 568899999999887 7778
Q ss_pred CCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecC
Q 045938 575 FPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELED 623 (681)
Q Consensus 575 l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 623 (681)
+|+.. ..++.|+.|++..+|+|..-|+.-..=++|+.-+|.-
T Consensus 354 LPeaI-------HlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 354 LPEAI-------HLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred chhhh-------hhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence 88877 6788888888888888876665333334555555543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=6.5e-24 Score=204.29 Aligned_cols=475 Identities=20% Similarity=0.252 Sum_probs=274.8
Q ss_pred ccceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCCC-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938 8 LEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL 86 (681)
Q Consensus 8 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (681)
++.+.|+.++...+-..+- .+..|.+|++.+ +.+.++|+ ++.+..++.|+++.+. +..+|...+. .++|
T Consensus 47 l~~lils~N~l~~l~~dl~--nL~~l~vl~~~~-n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s------~~~l 116 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLK--NLACLTVLNVHD-NKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGS------LISL 116 (565)
T ss_pred hhhhhhccCchhhccHhhh--cccceeEEEecc-chhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhh------hhhh
Confidence 4445555555443333322 355666666665 35566664 6666666666666654 5555554322 5555
Q ss_pred ceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCCCCC---CCccEEEEccCCCce--eecCCCCcccEE
Q 045938 87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHL---PALEMLVIEGCEELL--VSVSSLPSLCKF 161 (681)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l---~~L~~L~i~~~~~~~--~~~~~l~~L~~L 161 (681)
+.++.+.- .+.+... ++..+-.|+.++..+ +.+. ..|..+ .++..+++.+..... ...-.+..|+++
T Consensus 117 ~~l~~s~n-~~~el~~-----~i~~~~~l~dl~~~~-N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 117 VKLDCSSN-ELKELPD-----SIGRLLDLEDLDATN-NQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhcccc-ceeecCc-----hHHHHhhhhhhhccc-cccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 55555431 1111111 134455566665555 3333 444332 334444444432111 111125666666
Q ss_pred EECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecC
Q 045938 162 IIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITS 241 (681)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 241 (681)
+...+.. +++|+.+..++.|...+....+..+ . + -|.++..|+++.+..
T Consensus 189 d~~~N~L----------------------------~tlP~~lg~l~~L~~LyL~~Nki~~-l-P-ef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 189 DCNSNLL----------------------------ETLPPELGGLESLELLYLRRNKIRF-L-P-EFPGCSLLKELHVGE 237 (565)
T ss_pred ccchhhh----------------------------hcCChhhcchhhhHHHHhhhccccc-C-C-CCCccHHHHHHHhcc
Confidence 6554432 3456677888888887777666522 1 2 347788888888876
Q ss_pred CCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec-CCCCCCCceEEEEe
Q 045938 242 CPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP-EVALPSKLKKIEIR 320 (681)
Q Consensus 242 c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~ 320 (681)
. +++.+|+. .... .+++..|++++|.. +++|+.+..+.+|.+||+++|. +..+| ..+.+ .|+.|-+.
T Consensus 238 N-~i~~lpae----~~~~----L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 238 N-QIEMLPAE----HLKH----LNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALE 305 (565)
T ss_pred c-HHHhhHHH----Hhcc----cccceeeecccccc-ccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhc
Confidence 4 67766654 2222 37888888888776 8888888888889999998665 77765 44555 78888888
Q ss_pred cCCCCCcccccccc-CCCCccceeee-ccCCCccccccccCCCCceeEEEecccc-cccccccccCCCCcceeeeccCCC
Q 045938 321 ECDALKSLPEAWMC-DTNSSLEILEI-WICNSLTYIAGVQLPPSLKWTLTVEEGI-QSSSSSRRYTSSLLEGLHISRCPS 397 (681)
Q Consensus 321 ~~~~l~~~~~~~~~-~~~~~L~~L~l-~~c~~l~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~ 397 (681)
+|+ +..+-..+.. ..-.-|++|.= .-|..+..-.+. ...... .-..++...+.-+.+.|++++ .+
T Consensus 306 GNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~----------~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~q 373 (565)
T KOG0472|consen 306 GNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG----------TETAMTLPSESFPDIYAIITTKILDVSD-KQ 373 (565)
T ss_pred CCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc----------ccccCCCCCCcccchhhhhhhhhhcccc-cc
Confidence 877 4433322210 01111222211 011111111000 000000 011112222333466666666 34
Q ss_pred cccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeec
Q 045938 398 LTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIW 477 (681)
Q Consensus 398 l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~ 477 (681)
++. .|...|..+-. .-+...++++|+ +.++|..+..+..+.+.-+..++..+.+|..+..+++|..|+++
T Consensus 374 lt~-VPdEVfea~~~--------~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 374 LTL-VPDEVFEAAKS--------EIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred ccc-CCHHHHHHhhh--------cceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 444 23222211111 126778888884 56677777777777776666677777778888888999999999
Q ss_pred cCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccc-cCCCCCCCceeeeecCcc---
Q 045938 478 ECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE-DDGLPTNLHRLEIIDNKK--- 553 (681)
Q Consensus 478 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~--- 553 (681)
+|. +.++|..++.+-.|+.++++.|+ .+.+|..+..+..++.+-.++|+ ++.+++ .+.++.+|..||+.+|-+
T Consensus 444 NN~-Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l~nm~nL~tLDL~nNdlq~I 520 (565)
T KOG0472|consen 444 NNL-LNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQ-IGSVDPSGLKNMRNLTTLDLQNNDLQQI 520 (565)
T ss_pred cch-hhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhcccc-ccccChHHhhhhhhcceeccCCCchhhC
Confidence 766 67888888888889999999985 56777777666666666555555 444444 377888888888888765
Q ss_pred ---cccCCcccEEEEecc
Q 045938 554 ---IWKFSSLRQLTISGC 568 (681)
Q Consensus 554 ---~~~l~~L~~L~l~~~ 568 (681)
+++|++|++|.+.||
T Consensus 521 Pp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGN 538 (565)
T ss_pred ChhhccccceeEEEecCC
Confidence 678888888888887
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-22 Score=215.20 Aligned_cols=271 Identities=21% Similarity=0.230 Sum_probs=187.7
Q ss_pred cccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec-C
Q 045938 229 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP-E 307 (681)
Q Consensus 229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~-~ 307 (681)
..-++|+.|....|+..+..+. -.+.+|++++++.+.. ..+|+++..+.+|+.+.+..|. +..+| .
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~-----------p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~-l~~lp~r 282 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVH-----------PVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHNR-LVALPLR 282 (1081)
T ss_pred ecCcchheeeeccCcceeeccc-----------cccccceeeecchhhh-hcchHHHHhcccceEecccchh-HHhhHHH
Confidence 3456777777777754432221 2447788888888766 7788888888888888888765 55544 3
Q ss_pred CCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCc
Q 045938 308 VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLL 387 (681)
Q Consensus 308 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L 387 (681)
+....+|++|++..|. ++.+|... ....+|++|++.. +++..+|...+.... ..+
T Consensus 283 i~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tLdL~~-N~L~~lp~~~l~v~~---------------------~~l 337 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTLDLQS-NNLPSLPDNFLAVLN---------------------ASL 337 (1081)
T ss_pred HhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeeeeehh-ccccccchHHHhhhh---------------------HHH
Confidence 3446788888888877 77777765 5678888888876 566666542111000 012
Q ss_pred ceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcC
Q 045938 388 EGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHN 467 (681)
Q Consensus 388 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~ 467 (681)
+.+..+. ..+.. .+ ..+-..++ .|+.|++.+|...+...+.+.++.+|++|++++|.+.......+.+
T Consensus 338 ~~ln~s~-n~l~~-lp---------~~~e~~~~-~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k 405 (1081)
T KOG0618|consen 338 NTLNVSS-NKLST-LP---------SYEENNHA-ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK 405 (1081)
T ss_pred HHHhhhh-ccccc-cc---------cccchhhH-HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence 2222222 11111 00 00011222 3899999999888887788999999999999999877555555788
Q ss_pred cccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCC-CCCcee
Q 045938 468 LRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLP-TNLHRL 546 (681)
Q Consensus 468 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L 546 (681)
++.|+.|++++|. +..+|..+..++.|++|...+|. +..+| .+..++.|+.+|++.|.......+ .... ++|++|
T Consensus 406 le~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~-~~~p~p~LkyL 481 (1081)
T KOG0618|consen 406 LEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLP-EALPSPNLKYL 481 (1081)
T ss_pred hHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhh-hhCCCccccee
Confidence 9999999999987 67888888889999999888877 56777 688899999999998876554333 2333 899999
Q ss_pred eeecCcc
Q 045938 547 EIIDNKK 553 (681)
Q Consensus 547 ~l~~~~~ 553 (681)
|+++|.-
T Consensus 482 dlSGN~~ 488 (1081)
T KOG0618|consen 482 DLSGNTR 488 (1081)
T ss_pred eccCCcc
Confidence 9999984
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.4e-14 Score=157.49 Aligned_cols=260 Identities=28% Similarity=0.326 Sum_probs=139.6
Q ss_pred CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceee
Q 045938 265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILE 344 (681)
Q Consensus 265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 344 (681)
..-..|+++++.. ..+|..+. ++|+.|++.+|. ++.+|. .+++|++|++++|. +..+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N~-Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCC-CcCCcchh--cCCCEEEccCCc-CCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence 4466788888755 57777664 478888888754 777764 36788888888874 6666642 25677777
Q ss_pred eccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCc
Q 045938 345 IWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLK 424 (681)
Q Consensus 345 l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~ 424 (681)
+.++ .++.++. .+ +.|+.|+++++ +++. +...|++|+
T Consensus 269 Ls~N-~L~~Lp~--lp------------------------~~L~~L~Ls~N-~Lt~---------------LP~~p~~L~ 305 (788)
T PRK15387 269 IFSN-PLTHLPA--LP------------------------SGLCKLWIFGN-QLTS---------------LPVLPPGLQ 305 (788)
T ss_pred ccCC-chhhhhh--ch------------------------hhcCEEECcCC-cccc---------------ccccccccc
Confidence 7663 3433331 00 12444444442 2222 111222355
Q ss_pred EEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccc
Q 045938 425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCK 504 (681)
Q Consensus 425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 504 (681)
.|++++|.+.. +|. -..+|+.|++++|.+.. +|.. ..+|+.|++++|. +..+|.. .++|+.|++++|.
T Consensus 306 ~LdLS~N~L~~-Lp~---lp~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~ 373 (788)
T PRK15387 306 ELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNR 373 (788)
T ss_pred eeECCCCcccc-CCC---CcccccccccccCcccc-cccc---ccccceEecCCCc-cCCCCCC---Ccccceehhhccc
Confidence 55555553322 221 11234444454444432 2211 1244455554443 2233321 1234444444443
Q ss_pred ccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccccc
Q 045938 505 RLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRT 584 (681)
Q Consensus 505 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~ 584 (681)
+..+|.. ..+|+.|++++|... .+|. ..++|+.|++++| .+..+|.
T Consensus 374 -L~~LP~l---~~~L~~LdLs~N~Lt-~LP~--------------------l~s~L~~LdLS~N--~LssIP~------- 419 (788)
T PRK15387 374 -LTSLPAL---PSGLKELIVSGNRLT-SLPV--------------------LPSELKELMVSGN--RLTSLPM------- 419 (788)
T ss_pred -cccCccc---ccccceEEecCCccc-CCCC--------------------cccCCCEEEccCC--cCCCCCc-------
Confidence 2223321 123444444444322 1221 2346777777776 5666664
Q ss_pred CCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcc
Q 045938 585 TLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKY 629 (681)
Q Consensus 585 ~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 629 (681)
.+.+|+.|++.++ .++.+|..+..+++|+.|++++|+.-..
T Consensus 420 ---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 420 ---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCch
Confidence 3456788888884 7889999888999999999999865433
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=2.4e-13 Score=149.75 Aligned_cols=98 Identities=28% Similarity=0.309 Sum_probs=61.9
Q ss_pred ccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCC
Q 045938 232 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALP 311 (681)
Q Consensus 232 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 311 (681)
.+-..|+++++ .++++|.. .+++|+.|++.+|.. ..+|. .+++|++|++++| .++.+|. .+
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~-----------l~~~L~~L~L~~N~L-t~LP~---lp~~Lk~LdLs~N-~LtsLP~--lp 261 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDC-----------LPAHITTLVIPDNNL-TSLPA---LPPELRTLEVSGN-QLTSLPV--LP 261 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcc-----------hhcCCCEEEccCCcC-CCCCC---CCCCCcEEEecCC-ccCcccC--cc
Confidence 34556777776 66666654 225677888877655 55665 3567788888766 4666664 35
Q ss_pred CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccc
Q 045938 312 SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIA 355 (681)
Q Consensus 312 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 355 (681)
++|++|++++|. +..+|.. ..+|+.|+++++ .++.++
T Consensus 262 ~sL~~L~Ls~N~-L~~Lp~l-----p~~L~~L~Ls~N-~Lt~LP 298 (788)
T PRK15387 262 PGLLELSIFSNP-LTHLPAL-----PSGLCKLWIFGN-QLTSLP 298 (788)
T ss_pred cccceeeccCCc-hhhhhhc-----hhhcCEEECcCC-cccccc
Confidence 677888887775 5555542 245777777663 455544
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=6.6e-13 Score=147.22 Aligned_cols=160 Identities=25% Similarity=0.333 Sum_probs=82.2
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
+|+.|++++|... .+|..+. ++|+.|++++|.+.. +|..+. ++|+.|++++|. +..+|.... ++|+.|+++
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls 333 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNS-LTALPETLP--PGLKTLEAG 333 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCc-cccCCcccc--ccceecccc
Confidence 4777777766433 4444332 467777777776553 333332 356666666655 334443322 466666666
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccccc
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIR 581 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~ 581 (681)
+|.. ..+|..+ .++|+.|++++|... .+|..+ ++ +|+.|+|++| .+..+|..
T Consensus 334 ~N~L-t~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~-----------------~L~~LdLs~N--~Lt~LP~~--- 385 (754)
T PRK15370 334 ENAL-TSLPASL--PPELQVLDVSKNQIT-VLPETL--PP-----------------TITTLDVSRN--ALTNLPEN--- 385 (754)
T ss_pred CCcc-ccCChhh--cCcccEEECCCCCCC-cCChhh--cC-----------------CcCEEECCCC--cCCCCCHh---
Confidence 6653 3355433 246666666666432 333321 23 4444444444 34444442
Q ss_pred cccCCCcccccceeEecccCCccccccccc----CCCCCCEEeecCCC
Q 045938 582 LRTTLPLPACLASLMIGNFPNLERLSSSIV----DLQNLTHLELEDCP 625 (681)
Q Consensus 582 ~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~----~~~~L~~L~l~~c~ 625 (681)
.+..|+.|+++++ ++..+|..+. .++++..|++.+|+
T Consensus 386 ------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 386 ------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2234555556553 5555554332 34666677777665
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=3.1e-12 Score=141.97 Aligned_cols=238 Identities=20% Similarity=0.269 Sum_probs=154.0
Q ss_pred EEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCC
Q 045938 366 TLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNT 445 (681)
Q Consensus 366 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~ 445 (681)
.+.+.+. .+..++... .++++.|+++++ +++. ++ . .++.+|++|++++|.+ ..+|..+. +
T Consensus 182 ~L~L~~~-~LtsLP~~I-p~~L~~L~Ls~N-~Lts-LP-----~--------~l~~nL~~L~Ls~N~L-tsLP~~l~--~ 241 (754)
T PRK15370 182 ELRLKIL-GLTTIPACI-PEQITTLILDNN-ELKS-LP-----E--------NLQGNIKTLYANSNQL-TSIPATLP--D 241 (754)
T ss_pred EEEeCCC-CcCcCCccc-ccCCcEEEecCC-CCCc-CC-----h--------hhccCCCEEECCCCcc-ccCChhhh--c
Confidence 4444443 333444322 246777877763 4444 22 1 1123588888887754 34554332 4
Q ss_pred CccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeec
Q 045938 446 SLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIG 525 (681)
Q Consensus 446 ~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~ 525 (681)
+|+.|++++|.+. .+|..+. .+|+.|++++|. +..+|..+. ++|+.|++++|. +..+|..+. ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhc
Confidence 6888888888766 4455543 478888888665 556766443 478888888876 445655432 468888888
Q ss_pred ccCCCCCccccCCCCCCCceeeeecCcccc----cCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccC
Q 045938 526 EGGELPSLEEDDGLPTNLHRLEIIDNKKIW----KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFP 601 (681)
Q Consensus 526 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 601 (681)
+|... .+|.. .+++|+.|++++|..-. -.++|+.|++++| .+..+|.. .+++|+.|+++++
T Consensus 313 ~N~Lt-~LP~~--l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N--~L~~LP~~---------lp~~L~~LdLs~N- 377 (754)
T PRK15370 313 SNSLT-ALPET--LPPGLKTLEAGENALTSLPASLPPELQVLDVSKN--QITVLPET---------LPPTITTLDVSRN- 377 (754)
T ss_pred CCccc-cCCcc--ccccceeccccCCccccCChhhcCcccEEECCCC--CCCcCChh---------hcCCcCEEECCCC-
Confidence 87644 34432 34688888888887511 2358888999887 56667752 4568889999886
Q ss_pred CcccccccccCCCCCCEEeecCCCCCcccCCC-----CCcccccEEEeCCchhH
Q 045938 602 NLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-----GLPSSLLQLYIGGCPLI 650 (681)
Q Consensus 602 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~~l 650 (681)
.+..+|..+. ++|+.|++++| ++..+|.. +..+.+..|++.+||.-
T Consensus 378 ~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 378 ALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6778887654 47888899887 67777752 22477889999998853
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.30 E-value=4.3e-14 Score=138.13 Aligned_cols=283 Identities=19% Similarity=0.245 Sum_probs=173.7
Q ss_pred ceeEEEEeecCCCCCCC--C-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCcc
Q 045938 32 KLVTLKFEYCGMCPTLP--S-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQG 108 (681)
Q Consensus 32 ~L~~L~l~~c~~l~~l~--~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 108 (681)
.||.|.+.||....+-+ . ....|+.++|.+.+|..+++..-.-. ...+++|++|.+..|+.+++......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl----a~~C~~l~~l~L~~c~~iT~~~Lk~l--- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL----ARYCRKLRHLNLHSCSSITDVSLKYL--- 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHH----HHhcchhhhhhhcccchhHHHHHHHH---
Confidence 68999999997766655 2 56689999999999986665432211 23489999999999998887655433
Q ss_pred ccccCCcceEeeccCccccc----cCCCCCCCccEEEEccCCCcee-----ecCCCCcccEEEECCCCCceeeccccccC
Q 045938 109 VERFPKLRELHILRCSKLKG----TFPEHLPALEMLVIEGCEELLV-----SVSSLPSLCKFIIGGCKKIVWESATGHLG 179 (681)
Q Consensus 109 ~~~~~~L~~L~l~~c~~l~~----~~~~~l~~L~~L~i~~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 179 (681)
...|++|++|+++.|+.+++ .+.++...++.+..+||..... .-...+-+.++++..|..++.++....
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i-- 289 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI-- 289 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH--
Confidence 56799999999999998886 4445667788887778876542 222355566777777776665542111
Q ss_pred CCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHh
Q 045938 180 SQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQ 259 (681)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 259 (681)
...+..|+.|...+|....+ ........+.++|+.+.++.|..++. ..+..
T Consensus 290 --------------------~~~c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd-------~~ft~ 340 (483)
T KOG4341|consen 290 --------------------ACGCHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSD-------RGFTM 340 (483)
T ss_pred --------------------hhhhhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhh-------hhhhh
Confidence 11245566666666665554 12223344566777777777665544 33444
Q ss_pred hhhccCCccEEeeeCCcCccc--CCCCCCCCCCcceEEEeCCCCceeec-----C-CCCCCCceEEEEecCCCCCccccc
Q 045938 260 LCQLSCILEYIDLRDCQDLVK--LPQSPLSLSSLREIEIYGCSSLVSFP-----E-VALPSKLKKIEIRECDALKSLPEA 331 (681)
Q Consensus 260 l~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~L~~~~~l~~~~-----~-~~~~~~L~~L~l~~~~~l~~~~~~ 331 (681)
+...++.|+.+++.+|....+ +...-.+++.|+.+.++.|..+++.. . ......|..+.+++|+.+.+....
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 445566666666666655332 22222356666666666666555431 1 112455666666666655442222
Q ss_pred cccCCCCccceeeeccCCCccc
Q 045938 332 WMCDTNSSLEILEIWICNSLTY 353 (681)
Q Consensus 332 ~~~~~~~~L~~L~l~~c~~l~~ 353 (681)
.. ..+++|+.+++.+|..++.
T Consensus 421 ~l-~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 421 HL-SICRNLERIELIDCQDVTK 441 (483)
T ss_pred HH-hhCcccceeeeechhhhhh
Confidence 11 4556666666666665554
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=2.5e-13 Score=131.80 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=70.9
Q ss_pred HhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccC
Q 045938 439 ERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLT 517 (681)
Q Consensus 439 ~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~ 517 (681)
.++..+++|++|++++|.+...-+.+|..+..++.|.+..|+ +..+.. .+..+..|+.|++.+|+.+...|..+..+.
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 568888999999999988888778888888889999888877 444444 344567888899999888777787888888
Q ss_pred CcceeeecccC
Q 045938 518 SLQQLTIGEGG 528 (681)
Q Consensus 518 ~L~~L~l~~~~ 528 (681)
+|.+|++-+|+
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 88888887765
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.24 E-value=2.5e-13 Score=132.93 Aligned_cols=308 Identities=20% Similarity=0.274 Sum_probs=204.1
Q ss_pred CcccEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeeccccccccccccc
Q 045938 156 PSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLK 235 (681)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 235 (681)
..||+|++.+|....+... .+....+|++++|.+.+|..+++ ....++..++++|+
T Consensus 138 g~lk~LSlrG~r~v~~ssl----------------------rt~~~~CpnIehL~l~gc~~iTd--~s~~sla~~C~~l~ 193 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSL----------------------RTFASNCPNIEHLALYGCKKITD--SSLLSLARYCRKLR 193 (483)
T ss_pred cccccccccccccCCcchh----------------------hHHhhhCCchhhhhhhcceeccH--HHHHHHHHhcchhh
Confidence 3588999998887665432 12234579999999999997776 23344567899999
Q ss_pred EEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc--CCCCCCCCCCcceEEEeCCCCceeec---CCCC
Q 045938 236 RLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK--LPQSPLSLSSLREIEIYGCSSLVSFP---EVAL 310 (681)
Q Consensus 236 ~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~L~~~~~l~~~~---~~~~ 310 (681)
++++..|..+++ ..++.+...+++|++|+++.|+.+.. +-.....+..++.+...||.....-. ..+.
T Consensus 194 ~l~L~~c~~iT~-------~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 194 HLNLHSCSSITD-------VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred hhhhcccchhHH-------HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 999999999887 45666778899999999999987654 22234466778888888887554311 1223
Q ss_pred CCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCccee
Q 045938 311 PSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGL 390 (681)
Q Consensus 311 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L 390 (681)
+.-+.++++..|..+++......+..+..|+.+..++|..+.+.+-..+. ..+++|+.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg---------------------~~~~~L~~l 325 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG---------------------QHCHNLQVL 325 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh---------------------cCCCceEEE
Confidence 55677778888887777654444466788899999888877664432211 123468888
Q ss_pred eeccCCCcccccccCCcchhhhhcccC-CCCCCCcEEEEcCCCCchh--HHHhcccCCCccEEEeecccCcccc-----c
Q 045938 391 HISRCPSLTCIFSKNELPATLESLEVG-NLPPSLKSLDVWSCSELES--IAERLDNNTSLETISISECENLKIL-----P 462 (681)
Q Consensus 391 ~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~p~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~ls~~~~~~~~-----~ 462 (681)
.++.|..+++. . +.. ++ ..++ |+.+++.+|....+ +...-.+++.|+++.+++|..+... .
T Consensus 326 ~l~~c~~fsd~-~-------ft~--l~rn~~~-Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 326 ELSGCQQFSDR-G-------FTM--LGRNCPH-LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred eccccchhhhh-h-------hhh--hhcCChh-hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 88888877761 1 111 22 2334 88899888865444 3334467888999999888765432 2
Q ss_pred CcCcCcccccEEeeccCCCceec-CCCCCCCCCcceEeeccccccccccc--cCcccCCcceeeecc
Q 045938 463 SGLHNLRQLQEIGIWECENLVSF-PQGGLPCAKLTRLEISYCKRLQVLPK--GLHNLTSLQQLTIGE 526 (681)
Q Consensus 463 ~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~L~l~~ 526 (681)
..-.++..|+.+.+++|+.+.+- -.-...|++|+.+++.+|.....-+. .-.++|++++..+.+
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 22234677888888888876432 12345577888888888775433222 234566666665543
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=3.1e-13 Score=115.95 Aligned_cols=142 Identities=25% Similarity=0.373 Sum_probs=97.3
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
+++|.+++| .+..+|+.++.+.+|++|++++|.+. .+|..++++++|+.|+++-+. +..+|.+++++|.|+.||+.+
T Consensus 35 ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccc
Confidence 777888887 44556777888888888888877665 456677888888888888655 556788888888888888887
Q ss_pred cccc-ccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEecc
Q 045938 503 CKRL-QVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGC 568 (681)
Q Consensus 503 ~~~l-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~ 568 (681)
|+.. ..+|..+..++.|+.|.+++|. .+.+|+.++.+++|+.|.+.+|.. ++.++.|++|++++|
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 7654 3467777778888888888775 344555566666666555555543 234444444444443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.21 E-value=5.5e-13 Score=114.49 Aligned_cols=154 Identities=23% Similarity=0.347 Sum_probs=115.8
Q ss_pred CcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCc
Q 045938 465 LHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLH 544 (681)
Q Consensus 465 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 544 (681)
+-.+.+...|.+++|. +..+|.++..+.+|+.|.+++|+ +..+|.+++.+++|+.|+++-|. +...|..||.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 3456778888888877 56778788888889999998877 57788888899999999998776 456677788888888
Q ss_pred eeeeecCcc--------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCC
Q 045938 545 RLEIIDNKK--------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNL 616 (681)
Q Consensus 545 ~L~l~~~~~--------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L 616 (681)
.||+..|+. ++.++.|+-|++++| .++.+|.+. .-+++|+-|.+.+. .+-++|..+..++.|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dn--dfe~lp~dv-------g~lt~lqil~lrdn-dll~lpkeig~lt~l 175 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDN--DFEILPPDV-------GKLTNLQILSLRDN-DLLSLPKEIGDLTRL 175 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCC--CcccCChhh-------hhhcceeEEeeccC-chhhCcHHHHHHHHH
Confidence 888888765 345667777777776 566677665 45666666666663 666777777777788
Q ss_pred CEEeecCCCCCcccCC
Q 045938 617 THLELEDCPKLKYFPE 632 (681)
Q Consensus 617 ~~L~l~~c~~l~~l~~ 632 (681)
+.|+|-+| .++.+|.
T Consensus 176 relhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 176 RELHIQGN-RLTVLPP 190 (264)
T ss_pred HHHhcccc-eeeecCh
Confidence 88887775 6666665
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=2.5e-12 Score=132.25 Aligned_cols=146 Identities=21% Similarity=0.159 Sum_probs=86.5
Q ss_pred CcEEEEcCCCCc------hhHHHhcccCCCccEEEeecccCcccccCcCcCccc---ccEEeeccCCCce----ecCCCC
Q 045938 423 LKSLDVWSCSEL------ESIAERLDNNTSLETISISECENLKILPSGLHNLRQ---LQEIGIWECENLV----SFPQGG 489 (681)
Q Consensus 423 L~~L~l~~~~~~------~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~---L~~L~l~~~~~l~----~l~~~~ 489 (681)
+++++++++... ..++..+..+++|+.|++++|.+....+..+..+.+ |++|++++|.... .+...+
T Consensus 53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l 132 (319)
T cd00116 53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132 (319)
T ss_pred ceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH
Confidence 777777776544 223445666778888888877776444444433333 7888887776331 112223
Q ss_pred CCC-CCcceEeeccccccc----cccccCcccCCcceeeecccCCCCC----ccccCCCCCCCceeeeecCcc-------
Q 045938 490 LPC-AKLTRLEISYCKRLQ----VLPKGLHNLTSLQQLTIGEGGELPS----LEEDDGLPTNLHRLEIIDNKK------- 553 (681)
Q Consensus 490 ~~~-~~L~~L~l~~~~~l~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~------- 553 (681)
..+ ++|++|++++|.... .++..+..+++|++|++++|...+. ++..+...++|++|++++|..
T Consensus 133 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 212 (319)
T cd00116 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA 212 (319)
T ss_pred HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH
Confidence 334 677888888777542 2333445566777888877765432 222234456777777777764
Q ss_pred ----cccCCcccEEEEecc
Q 045938 554 ----IWKFSSLRQLTISGC 568 (681)
Q Consensus 554 ----~~~l~~L~~L~l~~~ 568 (681)
+..+++|++|++++|
T Consensus 213 l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 213 LAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHhcccCCCCEEecCCC
Confidence 225666777777775
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.19 E-value=1.4e-12 Score=126.73 Aligned_cols=225 Identities=19% Similarity=0.189 Sum_probs=152.2
Q ss_pred cCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCC-CCCCCC
Q 045938 416 VGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG-GLPCAK 494 (681)
Q Consensus 416 ~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~ 494 (681)
...+|....++++..|.+....+..|..+++|+.||+++|.+...-|.+|.++++|.+|.+.++..++++|.+ +..+..
T Consensus 62 P~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred cccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 4556777888999988776666678889999999999999888888888888888888888886667777663 234444
Q ss_pred cceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc---------------------
Q 045938 495 LTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------------------- 553 (681)
Q Consensus 495 L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------- 553 (681)
++.|.+.-|.........+..+++|..|.+.+|.....--..+..+.+++.+.+..|..
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 55554444443222233344444444444444432111111233334444444443330
Q ss_pred ------------------------------------------------cccCCcccEEEEeccCCCCcCCCccccccccC
Q 045938 554 ------------------------------------------------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTT 585 (681)
Q Consensus 554 ------------------------------------------------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~ 585 (681)
+.++++|++|++++| .+..+.+.+|
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN--~i~~i~~~aF----- 294 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN--KITRIEDGAF----- 294 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC--ccchhhhhhh-----
Confidence 347899999999998 7777777665
Q ss_pred CCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCCCC--cccccEEEeCCchhH
Q 045938 586 LPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKGL--PSSLLQLYIGGCPLI 650 (681)
Q Consensus 586 ~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l 650 (681)
.....+++|++.++ +++.+.. -|..+..|+.|++.+| +++.+....+ +.+|.+|++-.||.-
T Consensus 295 -e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 295 -EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred -cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCccc
Confidence 46667888999984 7888876 4567999999999997 6777665443 678999999888753
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=3.3e-12 Score=131.36 Aligned_cols=132 Identities=17% Similarity=0.094 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCch----hHHHhcccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCCCce----ecCCCC
Q 045938 422 SLKSLDVWSCSELE----SIAERLDNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECENLV----SFPQGG 489 (681)
Q Consensus 422 ~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~----~l~~~~ 489 (681)
+|++|++++|.... .+...+..+++|++|++++|.+.+. ++..+...++|++|++++|.... .+...+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 47777777776552 2334455666777777777766532 22233344577777777665321 122233
Q ss_pred CCCCCcceEeeccccccccccccCc-----ccCCcceeeecccCCCC----CccccCCCCCCCceeeeecCcc
Q 045938 490 LPCAKLTRLEISYCKRLQVLPKGLH-----NLTSLQQLTIGEGGELP----SLEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 490 ~~~~~L~~L~l~~~~~l~~~~~~l~-----~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 553 (681)
..+++|+.|++++|.........+. ..+.|+.|++++|.... .+...+..+++|+++++++|..
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 4456677777777654321111111 13566666666665431 1222233345555555555543
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.9e-09 Score=121.85 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=68.2
Q ss_pred CCCcceEeecccCC-ceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccC
Q 045938 203 IPKLEELEINDMKE-QTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKL 281 (681)
Q Consensus 203 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l 281 (681)
.+.|++|-+.+... ... .+.+++..++.|++|++++|..+..+|.. +..+ -+|++|++++... ..+
T Consensus 544 ~~~L~tLll~~n~~~l~~---is~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t~I-~~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE---ISGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDTGI-SHL 610 (889)
T ss_pred CCccceEEEeecchhhhh---cCHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCCCc-ccc
Confidence 34566666665432 222 44455677777777777777777776665 3333 6677777777655 677
Q ss_pred CCCCCCCCCcceEEEeCCCCceeecCCCC-CCCceEEEEecC
Q 045938 282 PQSPLSLSSLREIEIYGCSSLVSFPEVAL-PSKLKKIEIREC 322 (681)
Q Consensus 282 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~-~~~L~~L~l~~~ 322 (681)
|.+++++..|.+|++..+..+..++.... +++||+|.+...
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 77777777777777776666655544444 677777777653
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=1.8e-09 Score=122.13 Aligned_cols=108 Identities=22% Similarity=0.253 Sum_probs=78.7
Q ss_pred cccccccEEeecCCCC-ccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC
Q 045938 229 QDICSLKRLTITSCPK-LQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE 307 (681)
Q Consensus 229 ~~~~~L~~L~l~~c~~-l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~ 307 (681)
..++.|++|-+.+... +..++...| ..+|.|++|++++|..+..+|..++.+-+|++|+++++. +..+|.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff--------~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~ 612 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFF--------RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPS 612 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHH--------hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccch
Confidence 3455788888877542 444433321 334889999999988888899999999999999998754 777763
Q ss_pred -CCCCCCceEEEEecCCCCCccccccccCCCCccceeeecc
Q 045938 308 -VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWI 347 (681)
Q Consensus 308 -~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 347 (681)
+..+.+|.+|++..+..+..++... ..+++|++|.+..
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPR 651 (889)
T ss_pred HHHHHHhhheeccccccccccccchh--hhcccccEEEeec
Confidence 4557888888888888777775553 4588888888865
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2e-09 Score=106.53 Aligned_cols=183 Identities=16% Similarity=0.130 Sum_probs=95.3
Q ss_pred hcccCCCccEEEeecccCccc--ccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccc-cccccCcc
Q 045938 440 RLDNNTSLETISISECENLKI--LPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQ-VLPKGLHN 515 (681)
Q Consensus 440 ~l~~l~~L~~L~ls~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~-~~~~~l~~ 515 (681)
....|++++.||++.|-+... +......+|+|+.|+++.|....-... ....++.|+.|.+++|.... .+...+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 344555666666655544321 112233456666666665542211000 11234566666666665431 22223345
Q ss_pred cCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEeccCCCCcCCCccccccccCCC
Q 045938 516 LTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLP 587 (681)
Q Consensus 516 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~ 587 (681)
+|+|+.|++.+|............++.|++|||++|+. ++.+|.|+.|+++.| .+.++..-.+.+.....
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t--gi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST--GIASIAEPDVESLDKTH 298 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc--CcchhcCCCccchhhhc
Confidence 56666666666643322222244566667777776665 346777777777766 44443333333333445
Q ss_pred cccccceeEecccCCcccccc--cccCCCCCCEEeecCCC
Q 045938 588 LPACLASLMIGNFPNLERLSS--SIVDLQNLTHLELEDCP 625 (681)
Q Consensus 588 ~~~~L~~l~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~ 625 (681)
.+++|+.|.+..+ ++..++. .+..+++|+.|.+..+.
T Consensus 299 ~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 299 TFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence 6677777777764 4444443 44556777777776653
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.4e-09 Score=104.96 Aligned_cols=201 Identities=14% Similarity=0.090 Sum_probs=105.7
Q ss_pred hcccCCCccEEEeecccCccccc-CcCcCcccccEEeeccCCCce--ecCCCCCCCCCcceEeeccccccccccc-cCcc
Q 045938 440 RLDNNTSLETISISECENLKILP-SGLHNLRQLQEIGIWECENLV--SFPQGGLPCAKLTRLEISYCKRLQVLPK-GLHN 515 (681)
Q Consensus 440 ~l~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~ 515 (681)
.-.++.+|+++.+.++......- +-...+++++.|+++.|-... .+-.....+|+|+.|.++.|....-... .-..
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 34566777777776665432111 234457777777777664221 2222344567777777777664322211 1124
Q ss_pred cCCcceeeecccCCCC-CccccCCCCCCCceeeeecCcccc-------cCCcccEEEEeccCCCCcCCCccccccccCCC
Q 045938 516 LTSLQQLTIGEGGELP-SLEEDDGLPTNLHRLEIIDNKKIW-------KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLP 587 (681)
Q Consensus 516 l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~-------~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~ 587 (681)
+++|+.|.+++|.... ++......+|+|+.|+++.|..+. .+..|++|+|++| .+.+++.. ....
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N--~li~~~~~-----~~~~ 268 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN--NLIDFDQG-----YKVG 268 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC--cccccccc-----cccc
Confidence 5677777777776542 233334556777777777764311 3556777777766 33333321 1123
Q ss_pred cccccceeEecccCCcccc--ccc-----ccCCCCCCEEeecCCCCCcccCC---CCCcccccEEEeCCchh
Q 045938 588 LPACLASLMIGNFPNLERL--SSS-----IVDLQNLTHLELEDCPKLKYFPE---KGLPSSLLQLYIGGCPL 649 (681)
Q Consensus 588 ~~~~L~~l~l~~~~~l~~l--~~~-----~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~c~~ 649 (681)
.+++|+.|.+..+ .+.++ |+. ...||+|+.|++..|+ +...+. ...+++|+.|.+-.++.
T Consensus 269 ~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 269 TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccccc
Confidence 5556666655553 33322 221 3456667777776653 333332 23455566665555443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.41 E-value=1.1e-07 Score=86.00 Aligned_cols=77 Identities=25% Similarity=0.322 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhHHHhcc-cCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCC-CCCCCcceEee
Q 045938 423 LKSLDVWSCSELESIAERLD-NNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGG-LPCAKLTRLEI 500 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l 500 (681)
+++|++.++.+.. + +.++ .+.+|++|++++|.+... +.+..+++|++|++++|. +.++..++ ..+|+|++|++
T Consensus 21 ~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 21 LRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCC-CCccccchHHhCCcCCEEEC
Confidence 5555555554322 1 2233 344555555555554431 223444555555555444 22232211 12444555555
Q ss_pred cccc
Q 045938 501 SYCK 504 (681)
Q Consensus 501 ~~~~ 504 (681)
++|.
T Consensus 96 ~~N~ 99 (175)
T PF14580_consen 96 SNNK 99 (175)
T ss_dssp TTS-
T ss_pred cCCc
Confidence 4444
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=1.5e-07 Score=88.85 Aligned_cols=124 Identities=22% Similarity=0.191 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|+++++++|.+ +.+-+...-.|+++.|++++|.+.. .+.+..+++|..|++++|. +..+...-..+.+++.|.+++
T Consensus 286 LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccch-hhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhh
Confidence 77777777743 3343445556777777777776654 2335667777777777655 333332223455677777777
Q ss_pred ccccccccccCcccCCcceeeecccCCCCC-ccccCCCCCCCceeeeecCc
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPS-LEEDDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 552 (681)
|. +..+ .+++.+-+|..|++++|+.... -...+|.+|-|+.+.+.+|.
T Consensus 362 N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 362 NK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 65 2222 3455666666777766653221 11224555555555554444
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.41 E-value=1.5e-08 Score=103.70 Aligned_cols=189 Identities=24% Similarity=0.279 Sum_probs=120.3
Q ss_pred cEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccc
Q 045938 424 KSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYC 503 (681)
Q Consensus 424 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 503 (681)
...+++.|++ ..+|..+..+..|+.+.++.|.+. .+|..+.++..|..++++.|+ +..+|..++.+| |+.|-+++|
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC
Confidence 3445555533 345555566666666666666554 235556666666666666655 445666666553 666666665
Q ss_pred cccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccccccc
Q 045938 504 KRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLR 583 (681)
Q Consensus 504 ~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~ 583 (681)
+ +..+|..++....|..|+.+.|... .+|+.++ .+.+|+.|++..| .+..+|.+.
T Consensus 154 k-l~~lp~~ig~~~tl~~ld~s~nei~-slpsql~-----------------~l~slr~l~vrRn--~l~~lp~El---- 208 (722)
T KOG0532|consen 154 K-LTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-----------------YLTSLRDLNVRRN--HLEDLPEEL---- 208 (722)
T ss_pred c-cccCCcccccchhHHHhhhhhhhhh-hchHHhh-----------------hHHHHHHHHHhhh--hhhhCCHHH----
Confidence 5 4556666666666666666666533 3333344 4556666666665 566677665
Q ss_pred cCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC----CCCcccccEEEeCCc
Q 045938 584 TTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE----KGLPSSLLQLYIGGC 647 (681)
Q Consensus 584 ~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~i~~c 647 (681)
..-.|.+|+++. +++..||..|.++..|++|-+++|| +++=|. .+...--|+|+++-|
T Consensus 209 ----~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 209 ----CSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ----hCCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 233477777775 5899999999999999999999986 666554 244556688888888
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.34 E-value=2e-06 Score=87.45 Aligned_cols=75 Identities=28% Similarity=0.504 Sum_probs=46.7
Q ss_pred cccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcc
Q 045938 441 LDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ 520 (681)
Q Consensus 441 l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~ 520 (681)
+..+.+++.|++++|.+. .+|. + -++|++|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445677888888887433 3442 1 2358888888777776666533 24778888887765555543 455
Q ss_pred eeeeccc
Q 045938 521 QLTIGEG 527 (681)
Q Consensus 521 ~L~l~~~ 527 (681)
.|++..+
T Consensus 116 ~L~L~~n 122 (426)
T PRK15386 116 SLEIKGS 122 (426)
T ss_pred eEEeCCC
Confidence 5666543
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.33 E-value=2.5e-08 Score=96.26 Aligned_cols=221 Identities=18% Similarity=0.163 Sum_probs=114.5
Q ss_pred CcEEEEcCCCCchh----HHHhcccCCCccEEEeecccC---ccccc-------CcCcCcccccEEeeccCCCceecC--
Q 045938 423 LKSLDVWSCSELES----IAERLDNNTSLETISISECEN---LKILP-------SGLHNLRQLQEIGIWECENLVSFP-- 486 (681)
Q Consensus 423 L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~ls~~~~---~~~~~-------~~l~~l~~L~~L~l~~~~~l~~l~-- 486 (681)
++.+++++|.+-.. +...+.+.++|+..++++--. ...+| ..+..+|+|+++++++|-.-...+
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence 66666666654333 234455555666665554211 01111 122334566666666554222111
Q ss_pred --CCCCCCCCcceEeeccccccccc-------------cccCcccCCcceeeecccCCCCC----ccccCCCCCCCceee
Q 045938 487 --QGGLPCAKLTRLEISYCKRLQVL-------------PKGLHNLTSLQQLTIGEGGELPS----LEEDDGLPTNLHRLE 547 (681)
Q Consensus 487 --~~~~~~~~L~~L~l~~~~~l~~~-------------~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ 547 (681)
.-+.++..|+.|++.+|.....- ..-...-+.||++...+|..-.. +...+...+.|+++.
T Consensus 112 l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr 191 (382)
T KOG1909|consen 112 LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR 191 (382)
T ss_pred HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEE
Confidence 12234556666666666432111 11122345677777776664322 222355566777777
Q ss_pred eecCcc-----------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcc-----cccccc-
Q 045938 548 IIDNKK-----------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLE-----RLSSSI- 610 (681)
Q Consensus 548 l~~~~~-----------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~-----~l~~~~- 610 (681)
+.+|.+ +..+++|+.|++++| .+.. ......+..++..+.|+.+++++| .++ .+...+
T Consensus 192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DN--tft~--egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDN--TFTL--EGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALK 266 (382)
T ss_pred EecccccCchhHHHHHHHHhCCcceeeecccc--hhhh--HHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHh
Confidence 777776 336777777777776 1111 011223444556667777777777 443 222222
Q ss_pred cCCCCCCEEeecCCCCCcccCC------CCCcccccEEEeCCchh
Q 045938 611 VDLQNLTHLELEDCPKLKYFPE------KGLPSSLLQLYIGGCPL 649 (681)
Q Consensus 611 ~~~~~L~~L~l~~c~~l~~l~~------~~~~~~L~~L~i~~c~~ 649 (681)
..+|+|+.|.+.+| .++.=.. ..-.+.|++|++.+|..
T Consensus 267 ~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 267 ESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 23688888888887 3433111 11257788888888765
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.31 E-value=4.9e-07 Score=95.77 Aligned_cols=192 Identities=24% Similarity=0.321 Sum_probs=112.7
Q ss_pred EEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcc-cccEEeeccCCCceecCCCCCCCCCcceEeeccc
Q 045938 425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLR-QLQEIGIWECENLVSFPQGGLPCAKLTRLEISYC 503 (681)
Q Consensus 425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 503 (681)
.++...+...... ..+..++.++.|++.++.+... +.....+. +|+.|+++++. +..++.....+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccC-ccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 3555554432222 2334446677777776666543 33344443 67777777665 4455445566677777777777
Q ss_pred cccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcCCCc
Q 045938 504 KRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVSFPP 577 (681)
Q Consensus 504 ~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~l~~ 577 (681)
+ +..+|...+..+.|+.|++++|. +..+|...+.+.+|+++.+++|.. +.++.++..+.+.+| .+..++.
T Consensus 174 ~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n--~~~~~~~ 249 (394)
T COG4886 174 D-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN--KLEDLPE 249 (394)
T ss_pred h-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc--eeeeccc
Confidence 6 44555555566777777777765 444554345556677777777732 335666666666654 3333222
Q ss_pred cccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC
Q 045938 578 EDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE 632 (681)
Q Consensus 578 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 632 (681)
.. ..++++++|++.++ .+..++. +..+.+|+.|+++++......+.
T Consensus 250 ~~-------~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SI-------GNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hh-------ccccccceeccccc-ccccccc-ccccCccCEEeccCccccccchh
Confidence 22 35555777777764 5666665 67777888888888755544444
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=2.4e-06 Score=86.90 Aligned_cols=61 Identities=30% Similarity=0.628 Sum_probs=35.9
Q ss_pred cCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccc
Q 045938 264 SCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLP 329 (681)
Q Consensus 264 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~ 329 (681)
++++++|++++| .+..+|. -..+|++|.+++|..++.+|.. .+++|++|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccc
Confidence 366777777777 3466652 2235777777776666655532 24566666666665454443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.28 E-value=6.5e-07 Score=81.11 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=22.2
Q ss_pred CCccEEeeeCCcCcccCCCCCC-CCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCcccee
Q 045938 265 CILEYIDLRDCQDLVKLPQSPL-SLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEIL 343 (681)
Q Consensus 265 ~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 343 (681)
.++++|++++|.+ ..+. .++ .+.+|+.|++++|. ++.++.+..+++|++|++++|. +..+...+. ..+++|+.|
T Consensus 19 ~~~~~L~L~~n~I-~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~-~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQI-STIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD-KNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH-HH-TT--EE
T ss_pred ccccccccccccc-cccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCccccchH-HhCCcCCEE
Confidence 4466666666655 3232 233 46777788887665 7777766677778888877776 555543321 346777777
Q ss_pred eecc
Q 045938 344 EIWI 347 (681)
Q Consensus 344 ~l~~ 347 (681)
++++
T Consensus 94 ~L~~ 97 (175)
T PF14580_consen 94 YLSN 97 (175)
T ss_dssp E-TT
T ss_pred ECcC
Confidence 7765
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.27 E-value=1.8e-07 Score=88.28 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=54.5
Q ss_pred CcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc----cc--cCCcccEEEEec
Q 045938 494 KLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK----IW--KFSSLRQLTISG 567 (681)
Q Consensus 494 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~--~l~~L~~L~l~~ 567 (681)
.|+++|+++|. ...+..+..-.|.++.|+++.|..... .. +..+++|+.||+++|.. -| ++-+.++|.+.+
T Consensus 285 ~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v-~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV-QN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccc-hhhhhhhhhhccceeEEeccccceeee-hh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45555555554 233444444555555555555543321 11 44455555555555544 11 344555555555
Q ss_pred cCCCCcCCCccccccccCCCcccccceeEecccCCcccccc--cccCCCCCCEEeecCCC
Q 045938 568 CDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS--SIVDLQNLTHLELEDCP 625 (681)
Q Consensus 568 ~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~ 625 (681)
| .++++..- .-+.+|..|++.++ +++.+.. +++++|-|+++.+.+||
T Consensus 362 N--~iE~LSGL--------~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 362 N--KIETLSGL--------RKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred h--hHhhhhhh--------Hhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 4 33333332 13334444444442 3443332 44445555555555543
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.2e-08 Score=93.26 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=93.4
Q ss_pred CCcEEEEcCCCCchh-HHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC--CCCCCCCcceE
Q 045938 422 SLKSLDVWSCSELES-IAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ--GGLPCAKLTRL 498 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L 498 (681)
.++.||+++..+... +...+..+.+|+.|.+.++...+.+...+..-.+|+.++++.|.+++.... .+.+|..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777655433 334566777888888887777766666666667788888887776654322 33467778888
Q ss_pred eeccccccccccccC--cccCCcceeeecccCCC---CCccccCCCCCCCceeeeecCcc--------cccCCcccEEEE
Q 045938 499 EISYCKRLQVLPKGL--HNLTSLQQLTIGEGGEL---PSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTI 565 (681)
Q Consensus 499 ~l~~~~~l~~~~~~l--~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l 565 (681)
+++-|.........+ +--++|..|+++|+... ..+.--...+++|.+||+++|.. +.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 887776554332211 11256777788776421 12222245677777788777765 336777788777
Q ss_pred ecc
Q 045938 566 SGC 568 (681)
Q Consensus 566 ~~~ 568 (681)
+.|
T Consensus 346 sRC 348 (419)
T KOG2120|consen 346 SRC 348 (419)
T ss_pred hhh
Confidence 775
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.21 E-value=1.5e-06 Score=96.59 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=67.2
Q ss_pred ccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecc
Q 045938 447 LETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE 526 (681)
Q Consensus 447 L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 526 (681)
++.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666666666666677777766665555666566666677777777666666666666677777777777
Q ss_pred cCCCCCccccCCC-CCCCceeeeecCcc
Q 045938 527 GGELPSLEEDDGL-PTNLHRLEIIDNKK 553 (681)
Q Consensus 527 ~~~~~~~~~~~~~-~~~L~~L~l~~~~~ 553 (681)
|...+.+|..++. ..++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 6666666655443 23444555555543
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.20 E-value=2.4e-07 Score=89.60 Aligned_cols=213 Identities=20% Similarity=0.212 Sum_probs=148.8
Q ss_pred chhHHHhcccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCCCc---eecC-------CCCCCCCCcceEe
Q 045938 434 LESIAERLDNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECENL---VSFP-------QGGLPCAKLTRLE 499 (681)
Q Consensus 434 ~~~~~~~l~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l---~~l~-------~~~~~~~~L~~L~ 499 (681)
.+.+.+.+..+..++++++++|.+-.. +...+.+.++|+..++++--.- ..+| ..+..+|.|++++
T Consensus 19 ~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 19 EKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred hhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 344556778899999999999988532 3344566778888888864211 1222 2455678999999
Q ss_pred eccccccccccc----cCcccCCcceeeecccCCCCC-------------ccccCCCCCCCceeeeecCcc---------
Q 045938 500 ISYCKRLQVLPK----GLHNLTSLQQLTIGEGGELPS-------------LEEDDGLPTNLHRLEIIDNKK--------- 553 (681)
Q Consensus 500 l~~~~~l~~~~~----~l~~l~~L~~L~l~~~~~~~~-------------~~~~~~~~~~L~~L~l~~~~~--------- 553 (681)
++.|..-...+. .+..+..|+.|.+.+|..-.. ...-++..++|+++...+|+.
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 999986544443 345689999999999974322 112256678999999999987
Q ss_pred --cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcc-----cccccccCCCCCCEEeecCCCC
Q 045938 554 --IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLE-----RLSSSIVDLQNLTHLELEDCPK 626 (681)
Q Consensus 554 --~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~ 626 (681)
+...+.|+++.+..|.-. |......+....+.+.|+.|++.++ .++ .+...+..+|+|+.|++++| .
T Consensus 179 ~~~~~~~~leevr~~qN~I~----~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc-l 252 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIR----PEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC-L 252 (382)
T ss_pred HHHHhccccceEEEeccccc----CchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc-c
Confidence 336789999999987322 2222233445568889999999985 333 23346778899999999999 5
Q ss_pred CcccCC-------CCCcccccEEEeCCchhHHh
Q 045938 627 LKYFPE-------KGLPSSLLQLYIGGCPLIAE 652 (681)
Q Consensus 627 l~~l~~-------~~~~~~L~~L~i~~c~~l~~ 652 (681)
++.-.. ....|+|++|++.+|..-.+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 655322 12378999999999975544
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=5.9e-08 Score=91.49 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=36.3
Q ss_pred cccCCCccEEEeecccCcc-cccCcCcCcccccEEeeccCCCceecCC---CCCCCCCcceEeeccccc
Q 045938 441 LDNNTSLETISISECENLK-ILPSGLHNLRQLQEIGIWECENLVSFPQ---GGLPCAKLTRLEISYCKR 505 (681)
Q Consensus 441 l~~l~~L~~L~ls~~~~~~-~~~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~~~~L~~L~l~~~~~ 505 (681)
...+++|.+||+++|.... .....+..++.|+++.++.|..+ .|. .+...|+|.+|++.+|-.
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 3456666666666665432 12233455677777777777644 222 344567777777777643
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=1.8e-06 Score=95.99 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=97.9
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
++.|++++|...+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 78899999988888898999999999999999999999999999999999999999987778898889999999999999
Q ss_pred ccccccccccCccc-CCcceeeecccCCCCCc
Q 045938 503 CKRLQVLPKGLHNL-TSLQQLTIGEGGELPSL 533 (681)
Q Consensus 503 ~~~l~~~~~~l~~l-~~L~~L~l~~~~~~~~~ 533 (681)
|.....+|..++.. .++..+++.+|..+...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCC
Confidence 99888888877653 46778899888755443
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=1.1e-06 Score=92.99 Aligned_cols=163 Identities=24% Similarity=0.272 Sum_probs=81.7
Q ss_pred CcEEEEcCCCCchhHHHhcccCC-CccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 423 LKSLDVWSCSELESIAERLDNNT-SLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
++.|++.++.. ..++...+.+. +|+.|++++|.+... |..++.+++|+.|++++|+ +.+++......++|+.|+++
T Consensus 118 l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCccc-ccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCch-hhhhhhhhhhhhhhhheecc
Confidence 55555555432 23333344442 555555555554432 2334555556666666555 33444433344556666666
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcCC
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVSF 575 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~l 575 (681)
+|. +..+|........|+++.+++|....... .+..+.++..+.+.+|+. +..+++++.|++++| .+..+
T Consensus 195 ~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n--~i~~i 270 (394)
T COG4886 195 GNK-ISDLPPEIELLSALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN--QISSI 270 (394)
T ss_pred CCc-cccCchhhhhhhhhhhhhhcCCcceecch-hhhhcccccccccCCceeeeccchhccccccceeccccc--ccccc
Confidence 554 34444444444445566665554222222 245555555555555543 335556666666665 45444
Q ss_pred CccccccccCCCcccccceeEeccc
Q 045938 576 PPEDIRLRTTLPLPACLASLMIGNF 600 (681)
Q Consensus 576 ~~~~~~~~~~~~~~~~L~~l~l~~~ 600 (681)
+. . ....+++.+++.+.
T Consensus 271 ~~-~-------~~~~~l~~L~~s~n 287 (394)
T COG4886 271 SS-L-------GSLTNLRELDLSGN 287 (394)
T ss_pred cc-c-------cccCccCEEeccCc
Confidence 44 1 35556666666664
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=6e-06 Score=61.05 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=29.0
Q ss_pred CcceEeecccccccccc-ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938 494 KLTRLEISYCKRLQVLP-KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 494 ~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 552 (681)
+|++|++++|.. ..+| ..+..+++|++|++++|......+..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 455555555542 3333 344555555555555555433333345555555555555543
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.98 E-value=1.2e-05 Score=59.39 Aligned_cols=9 Identities=44% Similarity=0.508 Sum_probs=3.4
Q ss_pred CcEEEEcCC
Q 045938 423 LKSLDVWSC 431 (681)
Q Consensus 423 L~~L~l~~~ 431 (681)
|++|++++|
T Consensus 3 L~~L~l~~n 11 (61)
T PF13855_consen 3 LESLDLSNN 11 (61)
T ss_dssp ESEEEETSS
T ss_pred CcEEECCCC
Confidence 333333333
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.84 E-value=1.2e-06 Score=90.08 Aligned_cols=139 Identities=28% Similarity=0.330 Sum_probs=77.5
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|+.+.+..| ....+|..++++..|..++++.|.+.. +|..+..++ |+.|.+++|. ++.+|..++..+.|..|+.+.
T Consensus 100 Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 100 LESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhh
Confidence 444444443 234455556666666666666665542 344444333 6666666544 455666555556666666666
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEecc
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGC 568 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~ 568 (681)
|. +..+|..++++.+|+.|.+..|... .+|+.++ .-.|..||++.|++ +.+|..|++|-|.+|
T Consensus 176 ne-i~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 176 NE-IQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred hh-hhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccC
Confidence 65 4556666666666666666666533 3333344 33366666666665 345666666666665
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.65 E-value=7.2e-06 Score=87.05 Aligned_cols=107 Identities=22% Similarity=0.177 Sum_probs=43.3
Q ss_pred cccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcc
Q 045938 441 LDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ 520 (681)
Q Consensus 441 l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~ 520 (681)
+..+.+|+.+++.+|.+..... .+..+++|++|++++|. ++.+. ++..++.|+.|++.+|.. ..+ ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGNLI-SDI-SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhccc-chhhhhcchheeccccc-ccccc-chhhccchhhheeccCcc-hhc-cCCccchhhh
Confidence 3444445555555444443111 13344455555555444 22222 122333455555555442 222 1233344455
Q ss_pred eeeecccCCCCCcc-ccCCCCCCCceeeeecCcc
Q 045938 521 QLTIGEGGELPSLE-EDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 521 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 553 (681)
.+++++|.....-+ . ...+.+++.+++.+|.+
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 55554444322211 1 23444444455544443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=7.2e-05 Score=71.12 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=42.3
Q ss_pred cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc--cccCCCCCCEEeecCCCCCcccC
Q 045938 554 IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS--SIVDLQNLTHLELEDCPKLKYFP 631 (681)
Q Consensus 554 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~ 631 (681)
..-+|++..+-+..| .+.+...+. .+. -++.+.-|.++. .++.++.. .+..||.|.-|.++++|....+.
T Consensus 195 ~r~Fpnv~sv~v~e~--PlK~~s~ek--~se---~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEG--PLKTESSEK--GSE---PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred HhhcccchheeeecC--cccchhhcc--cCC---CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 446788888888776 444433322 111 222233344444 24444432 56778999999999998888876
Q ss_pred C
Q 045938 632 E 632 (681)
Q Consensus 632 ~ 632 (681)
.
T Consensus 267 ~ 267 (418)
T KOG2982|consen 267 G 267 (418)
T ss_pred C
Confidence 5
No 49
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=3.5e-06 Score=92.07 Aligned_cols=110 Identities=22% Similarity=0.343 Sum_probs=53.4
Q ss_pred CCCcceeeecCCccceeeCccccCCCCCccCCCcceeecccc-CCccccc--ccCCCccccccCCcceEeeccCccccc-
Q 045938 53 LPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDM-QGWEDWI--PHGFSQGVERFPKLRELHILRCSKLKG- 128 (681)
Q Consensus 53 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~- 128 (681)
.++|+.|.+.+|..+.+...... ...+++|++|++.++ ....... .... ...+++|++|++++|..+++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDAL----ALKCPNLEELDLSGCCLLITLSPLLLLLL---LSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred CchhhHhhhcccccCChhhHHHH----HhhCchhheecccCcccccccchhHhhhh---hhhcCCcCccchhhhhccCch
Confidence 56666666666654544221110 112566666666552 1111110 0001 23356666666666654432
Q ss_pred ---cCCCCCCCccEEEEccCCCce-----eecCCCCcccEEEECCCCCc
Q 045938 129 ---TFPEHLPALEMLVIEGCEELL-----VSVSSLPSLCKFIIGGCKKI 169 (681)
Q Consensus 129 ---~~~~~l~~L~~L~i~~~~~~~-----~~~~~l~~L~~L~l~~~~~~ 169 (681)
.+...+++|++|.+.+|..++ .....++.|++|++++|..+
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 111235566666666665432 13334666777777777665
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.47 E-value=2e-05 Score=83.70 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=29.7
Q ss_pred CCCCCCcceEEEeCCCCceeecC-CCCCCCceEEEEecCCCCCccccccccCCCCccceeeecc
Q 045938 285 PLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWI 347 (681)
Q Consensus 285 ~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 347 (681)
+..+++|+.|++.++. +..+.. ...+++|++|++++|. +..+... ..++.|+.|++.+
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l---~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLEGL---STLTLLKELNLSG 149 (414)
T ss_pred cccccceeeeeccccc-hhhcccchhhhhcchheeccccc-cccccch---hhccchhhheecc
Confidence 4455666666666543 555444 4555566666666554 4333333 3344455555544
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.34 E-value=1.8e-05 Score=86.38 Aligned_cols=178 Identities=20% Similarity=0.288 Sum_probs=93.6
Q ss_pred CCCccEEEEccCCCcee-----ecCCCCcccEEEECCC-CCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcc
Q 045938 134 LPALEMLVIEGCEELLV-----SVSSLPSLCKFIIGGC-KKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE 207 (681)
Q Consensus 134 l~~L~~L~i~~~~~~~~-----~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 207 (681)
.+.|+.+.+.+|..+.. .....+.|++|+++++ ........ ....+...+++|+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------~~~~~~~~~~~L~ 246 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL--------------------LLLLLLSICRKLK 246 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh--------------------HhhhhhhhcCCcC
Confidence 56666666666654432 3334667777777763 22111110 0001223457777
Q ss_pred eEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc--CCCCC
Q 045938 208 ELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK--LPQSP 285 (681)
Q Consensus 208 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--l~~~~ 285 (681)
.|.+.++....+ .........+++|+.|.+.+|..+++ .++..+...+++|++|++++|..+.+ +....
T Consensus 247 ~l~l~~~~~isd--~~l~~l~~~c~~L~~L~l~~c~~lt~-------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 247 SLDLSGCGLVTD--IGLSALASRCPNLETLSLSNCSNLTD-------EGLVSIAERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred ccchhhhhccCc--hhHHHHHhhCCCcceEccCCCCccch-------hHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence 777777775444 11122233477888888887876554 55666667778888888888777532 22222
Q ss_pred CCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCc-cccccccCCCCccceeeeccCC
Q 045938 286 LSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKS-LPEAWMCDTNSSLEILEIWICN 349 (681)
Q Consensus 286 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~c~ 349 (681)
.++++|+.|.+..+.. ++.++.+.+.++..... .........+++++.+.+..|.
T Consensus 318 ~~c~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 318 KNCPNLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhCcchhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 3455555554443332 34455555544433321 1111112556666666666654
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.32 E-value=7.9e-06 Score=86.49 Aligned_cols=195 Identities=21% Similarity=0.228 Sum_probs=119.1
Q ss_pred cccCCCccEEEeecccCcccc-cCcCcCcccccEEeeccCCCceecCCCCCCC-CCcceEeeccccccccccc-------
Q 045938 441 LDNNTSLETISISECENLKIL-PSGLHNLRQLQEIGIWECENLVSFPQGGLPC-AKLTRLEISYCKRLQVLPK------- 511 (681)
Q Consensus 441 l~~l~~L~~L~ls~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~------- 511 (681)
+.-++++..|.+-.-...+-. |-.+..+.+|++|.+.+|+... .. ++..+ ..|+.|-- .+. +..+-.
T Consensus 80 ~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC-~~S-l~Al~~v~ascgg 155 (1096)
T KOG1859|consen 80 LDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLIC-HNS-LDALRHVFASCGG 155 (1096)
T ss_pred HHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhh-hcc-HHHHHHHHHHhcc
Confidence 445566666666554433221 4456668899999999987432 21 11111 13444321 111 111100
Q ss_pred cCc---ccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCCCcCCCccccccc
Q 045938 512 GLH---NLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLR 583 (681)
Q Consensus 512 ~l~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~ 583 (681)
.+. .+-.|...+++.|... .+..++..++.|+.|+|++|+. +..+++|++|+|+.| .+..+|.-.
T Consensus 156 d~~ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN--~L~~vp~l~---- 228 (1096)
T KOG1859|consen 156 DISNSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYN--CLRHVPQLS---- 228 (1096)
T ss_pred ccccchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccc--hhccccccc----
Confidence 011 1234666666666543 3334477788899999999887 558899999999998 455555533
Q ss_pred cCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC---CCcccccEEEeCCchhHHh
Q 045938 584 TTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK---GLPSSLLQLYIGGCPLIAE 652 (681)
Q Consensus 584 ~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~~l~~ 652 (681)
..-..|..|.+.++ .++++- ++.++.+|..|++++| -+....+. ..+..|..|++.|||.--.
T Consensus 229 ---~~gc~L~~L~lrnN-~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 229 ---MVGCKLQLLNLRNN-ALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ---hhhhhheeeeeccc-HHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 23334777777774 555553 6789999999999997 55554443 3368899999999986543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.17 E-value=0.00031 Score=47.49 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=27.1
Q ss_pred CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC
Q 045938 265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE 307 (681)
Q Consensus 265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~ 307 (681)
++|++|++++|.+ .++|..++++++|+.|++++|. +++++.
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 3577777777766 5666667778888888888775 665543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.0001 Score=81.91 Aligned_cols=83 Identities=20% Similarity=0.196 Sum_probs=45.6
Q ss_pred CCcceeeccccCCcccccccCCCccccccCCcceEeeccCccccc---cCCCCCCCccEEEEccCCCc-eeecCCCCccc
Q 045938 84 PCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKG---TFPEHLPALEMLVIEGCEEL-LVSVSSLPSLC 159 (681)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---~~~~~l~~L~~L~i~~~~~~-~~~~~~l~~L~ 159 (681)
.+|++|++.+-..+..-+.... ...+|+|++|.+.+-.-..+ .+-.+||+|..|||+++.-. ...++.+.+|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~ki---g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKI---GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHH---hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHH
Confidence 4577777766443322221111 24577777777766211111 22245777777777775421 13666677777
Q ss_pred EEEECCCCCc
Q 045938 160 KFIIGGCKKI 169 (681)
Q Consensus 160 ~L~l~~~~~~ 169 (681)
.|.+.+-+..
T Consensus 199 ~L~mrnLe~e 208 (699)
T KOG3665|consen 199 VLSMRNLEFE 208 (699)
T ss_pred HHhccCCCCC
Confidence 7777665543
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.06 E-value=8.1e-06 Score=86.41 Aligned_cols=123 Identities=24% Similarity=0.224 Sum_probs=86.7
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeec
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~ 501 (681)
|...+.++|. +..+-..+.-++.|+.|++++|++.+. +.+..+++|++||+++|. +..+|. ....| .|..|.++
T Consensus 166 L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred Hhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccch-hccccccchhhh-hheeeeec
Confidence 5666666664 333445567788999999999988874 367788999999999877 555665 22234 49999999
Q ss_pred cccccccccccCcccCCcceeeecccCCCCC--ccccCCCCCCCceeeeecCcc
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPS--LEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~ 553 (681)
+|.. ..+ .++.++.+|+-||+++|-..+. +.+ +..+..|+.|.|.+|..
T Consensus 241 nN~l-~tL-~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNAL-TTL-RGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHH-Hhh-hhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCcc
Confidence 9874 333 3677889999999998865432 222 55566778888888875
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.03 E-value=0.00084 Score=45.36 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=28.4
Q ss_pred ccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC
Q 045938 591 CLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE 632 (681)
Q Consensus 591 ~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 632 (681)
+|++|+++++ +++.+|..+.++++|+.|++++| .++++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4566666664 77788877888889999999887 5666654
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.0002 Score=68.17 Aligned_cols=199 Identities=17% Similarity=0.071 Sum_probs=109.3
Q ss_pred cCCCCCCCcEEEEcCCCCch--hHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCc-eecCCCCCCC
Q 045938 416 VGNLPPSLKSLDVWSCSELE--SIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENL-VSFPQGGLPC 492 (681)
Q Consensus 416 ~~~~p~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l-~~l~~~~~~~ 492 (681)
++...+.++++++.+|.+.+ ++..-+.++|.|++|+++.|.....+...-....+|+++.+.+.... .........+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 33333458888998886543 23445678899999999988876543222123568888888764421 2233344567
Q ss_pred CCcceEeeccccccccc---cccCc-ccCCcceeeecccCCCCC--ccccCCCCCCCceeeeecCcc--------cccCC
Q 045938 493 AKLTRLEISYCKRLQVL---PKGLH-NLTSLQQLTIGEGGELPS--LEEDDGLPTNLHRLEIIDNKK--------IWKFS 558 (681)
Q Consensus 493 ~~L~~L~l~~~~~l~~~---~~~l~-~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~--------~~~l~ 558 (681)
|.+++|+++.|.. +.+ ..... .-+.+++|...+|..... .-.....+|++..+-+..|.+ .-.+|
T Consensus 146 P~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 146 PKVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 7888888888742 211 11111 123555555555542211 001123456677777777754 22566
Q ss_pred cccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc------cccCCCCCCEEeec
Q 045938 559 SLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS------SIVDLQNLTHLELE 622 (681)
Q Consensus 559 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~------~~~~~~~L~~L~l~ 622 (681)
.+..|+++.+ .+.+... ...+..++.|+.|++.+.|-+..+.. -+..+++++.|+=+
T Consensus 225 ~~~~LnL~~~--~idswas-----vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 225 SLSCLNLGAN--NIDSWAS-----VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cchhhhhccc--ccccHHH-----HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 6666777665 3332221 12234566677777766655544321 34556666666543
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.90 E-value=0.00031 Score=78.13 Aligned_cols=15 Identities=33% Similarity=0.264 Sum_probs=8.4
Q ss_pred CcEEEEcCCCCchhH
Q 045938 423 LKSLDVWSCSELESI 437 (681)
Q Consensus 423 L~~L~l~~~~~~~~~ 437 (681)
|+.||.++....+.+
T Consensus 252 LrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 252 LRFLDCSGTDINEEI 266 (699)
T ss_pred ccEEecCCcchhHHH
Confidence 666666665544443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.58 E-value=0.0035 Score=56.70 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=56.6
Q ss_pred CCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCC-CCCCcceEeeccccccccccc--cCcccCCcce
Q 045938 445 TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGL-PCAKLTRLEISYCKRLQVLPK--GLHNLTSLQQ 521 (681)
Q Consensus 445 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~ 521 (681)
.+...+|+++|.+.. -..+.++++|.+|.+.+|. +..+...+. .+|+|+.|.+.+|.. ..+.+ .+..||+|+.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccce
Confidence 455667777777654 2345567777777777766 334433332 345677777777653 22211 2344556666
Q ss_pred eeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEec
Q 045938 522 LTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISG 567 (681)
Q Consensus 522 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~ 567 (681)
|.+-+|+.... ++=+ +..++.+|+|+.|+.++
T Consensus 118 Ltll~Npv~~k--------~~YR------~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHK--------KNYR------LYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcc--------cCce------eEEEEecCcceEeehhh
Confidence 65555543221 0000 00145777777777765
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.34 E-value=0.0054 Score=55.52 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC--CCCCCCCcceEe
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ--GGLPCAKLTRLE 499 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~ 499 (681)
+...+++++|..... ..+..+++|.+|.+.+|.++..-|..-.-+++|..|.+.+|. +..+.+ ....||+|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 477888888755432 357788999999999999987766655557889999999876 333332 456788999999
Q ss_pred ecccccccccc---ccCcccCCcceeeeccc
Q 045938 500 ISYCKRLQVLP---KGLHNLTSLQQLTIGEG 527 (681)
Q Consensus 500 l~~~~~l~~~~---~~l~~l~~L~~L~l~~~ 527 (681)
+-+|+....-- ..+..+|+|+.||+.+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99988543221 14566788888888764
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.10 E-value=0.0026 Score=60.01 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=23.2
Q ss_pred CCCCCCEEeecCCCCCcc------cCC--CCCcccccEEEeCCch
Q 045938 612 DLQNLTHLELEDCPKLKY------FPE--KGLPSSLLQLYIGGCP 648 (681)
Q Consensus 612 ~~~~L~~L~l~~c~~l~~------l~~--~~~~~~L~~L~i~~c~ 648 (681)
.+|+|..|...++..-.. +++ ...+|-|..|.++||.
T Consensus 270 ~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 270 FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 468999998888744322 122 1336677777777764
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.89 E-value=0.00078 Score=56.79 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=51.5
Q ss_pred cceeeecccCCCC--CccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcc
Q 045938 519 LQQLTIGEGGELP--SLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLP 589 (681)
Q Consensus 519 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~ 589 (681)
+-.++++.|+... +.+..+.....|+..+|++|.. ...++.++.|++.+| .+.++|++. ...
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n--eisdvPeE~-------Aam 99 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN--EISDVPEEL-------AAM 99 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh--hhhhchHHH-------hhh
Confidence 3445666665331 1222234444555566666554 124455566666655 555555553 345
Q ss_pred cccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC
Q 045938 590 ACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE 632 (681)
Q Consensus 590 ~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 632 (681)
+.|+++++..+ .+...|..+..+.+|..|+.-++ ....++.
T Consensus 100 ~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~ 140 (177)
T KOG4579|consen 100 PALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPEN-ARAEIDV 140 (177)
T ss_pred HHhhhcccccC-ccccchHHHHHHHhHHHhcCCCC-ccccCcH
Confidence 55555555553 34445544444555555555553 4444444
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.00057 Score=64.57 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC--CCCCCCCcceEee
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ--GGLPCAKLTRLEI 500 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l 500 (681)
.+.|+.++|... ++ .....++.|++|.|+-|++... ..+..+.+|++|++..|. +.++.+ .+.++|+|+.|++
T Consensus 21 vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCcc-HH-HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 788899998654 33 2346789999999999988763 346778999999999876 444443 3457889999999
Q ss_pred ccccccccccc-----cCcccCCcceeee
Q 045938 501 SYCKRLQVLPK-----GLHNLTSLQQLTI 524 (681)
Q Consensus 501 ~~~~~l~~~~~-----~l~~l~~L~~L~l 524 (681)
..|+-....+. .+..+|+|++|+=
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccC
Confidence 88876544433 4556788887753
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.56 E-value=0.0011 Score=56.01 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=57.5
Q ss_pred CcEEEEcCCCCc--hhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938 423 LKSLDVWSCSEL--ESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI 500 (681)
Q Consensus 423 L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 500 (681)
+..++++.|... .+.+..+.....|...++++|.+.+..+..-..++..+.+++.+|. +.++|..+..+|.|+.+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence 455566666432 2223344455566666666666655444333445566666666655 4556666666666777766
Q ss_pred ccccccccccccCcccCCcceeeecccC
Q 045938 501 SYCKRLQVLPKGLHNLTSLQQLTIGEGG 528 (681)
Q Consensus 501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~ 528 (681)
+.|+. ...|..+..+.++-.|+..+|.
T Consensus 108 ~~N~l-~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 108 RFNPL-NAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccCcc-ccchHHHHHHHhHHHhcCCCCc
Confidence 66663 3344444445555555555554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.00048 Score=65.06 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=25.0
Q ss_pred CCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEecc
Q 045938 517 TSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGC 568 (681)
Q Consensus 517 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~ 568 (681)
.+.++|+..||... ++. ....++.|++|.|+-|++ +..|++|++|+|..|
T Consensus 19 ~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN 73 (388)
T ss_pred HHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc
Confidence 34455555555422 221 134455555555555554 235556666666655
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.37 E-value=0.012 Score=55.73 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=21.2
Q ss_pred CCCCCCCcEEEEcCCCCchhHH----HhcccCCCccEEEeecccC
Q 045938 417 GNLPPSLKSLDVWSCSELESIA----ERLDNNTSLETISISECEN 457 (681)
Q Consensus 417 ~~~p~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~ls~~~~ 457 (681)
..+|. |+..+++.|.+-...| ..+.+.+.|++|.+++|..
T Consensus 89 lkcp~-l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 89 LKCPR-LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred hcCCc-ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 34444 6666666665433322 3345556666666666543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.12 E-value=0.014 Score=55.29 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=30.3
Q ss_pred CCccEEeeeCC--cCcccCCCCCCCCCCcceEEEeCCCCcee---ecCCCCCCCceEEEEecCC
Q 045938 265 CILEYIDLRDC--QDLVKLPQSPLSLSSLREIEIYGCSSLVS---FPEVALPSKLKKIEIRECD 323 (681)
Q Consensus 265 ~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~L~~~~~l~~---~~~~~~~~~L~~L~l~~~~ 323 (681)
|+|++|.+++| .....++.....+++|+++++++|. ++. +.....+.+|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence 56666666666 3333344334455666666666654 332 2333345555566665554
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.94 E-value=0.23 Score=42.77 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=28.6
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCC-CCCCcceEeec
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGL-PCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~ 501 (681)
|+.+.+... ....-...+.++++|+.+.+.++ ........+.++++++.+.+.. ....++...+ .+++|+.+++.
T Consensus 14 l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 14 LESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp --EEEETST---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEET
T ss_pred CCEEEECCC-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccC
Confidence 666665531 11111233555555666665543 2222233344555556665543 2233333222 25556655554
Q ss_pred c
Q 045938 502 Y 502 (681)
Q Consensus 502 ~ 502 (681)
.
T Consensus 90 ~ 90 (129)
T PF13306_consen 90 S 90 (129)
T ss_dssp T
T ss_pred c
Confidence 3
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.93 E-value=0.03 Score=53.03 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=27.2
Q ss_pred cCCCccEEEeecccCcccccCcCcCcccccEEeeccC--CCceecCCCCCCCCCcceEeecccc
Q 045938 443 NNTSLETISISECENLKILPSGLHNLRQLQEIGIWEC--ENLVSFPQGGLPCAKLTRLEISYCK 504 (681)
Q Consensus 443 ~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~--~~l~~l~~~~~~~~~L~~L~l~~~~ 504 (681)
.+..|+.+++.++..+. ...+..+++|+.|.++.| .....++.-.-.+|+|+++.+++|.
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 33444444444443332 112334556666666655 2222333333344566666666655
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.52 E-value=0.0074 Score=54.72 Aligned_cols=62 Identities=16% Similarity=0.303 Sum_probs=39.9
Q ss_pred CCCcceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCC---CCCCCccEEEEccCCC
Q 045938 83 FPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEGCEE 147 (681)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~i~~~~~ 147 (681)
+++++.|.+.+|..+.+|+.... ..-.|+|+.|+|++|+++++.-. ..+++|+.|.+.+-+.
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l---~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERL---GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred cchhhhheeccccchhhHHHHHh---cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 67777777777777777765444 33577788888888877773221 2356666666655443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.70 E-value=0.56 Score=40.34 Aligned_cols=103 Identities=20% Similarity=0.268 Sum_probs=45.1
Q ss_pred hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccc-cCcccC
Q 045938 440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPK-GLHNLT 517 (681)
Q Consensus 440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~ 517 (681)
.+.++++|+.+.+.. .........+.++++|+.+.+... +..++. .+..+++++.+.+.+ . ...++. .+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-c-ccccccccccccc
Confidence 355666777777653 233333444666667777777653 444444 334555677777754 2 233333 444567
Q ss_pred CcceeeecccCCCCCc-cccCCCCCCCceeeeec
Q 045938 518 SLQQLTIGEGGELPSL-EEDDGLPTNLHRLEIID 550 (681)
Q Consensus 518 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~ 550 (681)
+|+.+.+..+ ...+ ...+..+ +|+.+.+..
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 7777777543 2222 2235555 666666654
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.61 E-value=0.013 Score=53.09 Aligned_cols=96 Identities=19% Similarity=0.184 Sum_probs=68.5
Q ss_pred CCCcccccccccceeEEEEeecCCCCC--CCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCc
Q 045938 20 KFPTWFGDSSFLKLVTLKFEYCGMCPT--LPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGW 97 (681)
Q Consensus 20 ~~p~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l 97 (681)
..|.+-.. =..++.++-++|. +.. +-.+..++.++.|.+.+|..+.+...+..++ ..++|+.|++++|+..
T Consensus 92 ~lp~~~~~--~~~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 92 SLPGPNAD--NVKIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRI 164 (221)
T ss_pred cCCCCCCC--cceEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCee
Confidence 45665332 2357777777753 222 2247888999999999999888877665554 3899999999999988
Q ss_pred ccccccCCCccccccCCcceEeeccCccc
Q 045938 98 EDWIPHGFSQGVERFPKLRELHILRCSKL 126 (681)
Q Consensus 98 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 126 (681)
++...-. +..+++|+.|.+.+-+..
T Consensus 165 T~~GL~~----L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 165 TDGGLAC----LLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred chhHHHH----HHHhhhhHHHHhcCchhh
Confidence 7743221 567999999999885443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.40 E-value=0.15 Score=26.32 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=8.0
Q ss_pred CCCCEEeecCCCCCcccC
Q 045938 614 QNLTHLELEDCPKLKYFP 631 (681)
Q Consensus 614 ~~L~~L~l~~c~~l~~l~ 631 (681)
++|+.|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456666666663 55544
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.59 E-value=0.21 Score=27.82 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=9.2
Q ss_pred ccEEeeeCCcCcccCCCCC
Q 045938 267 LEYIDLRDCQDLVKLPQSP 285 (681)
Q Consensus 267 L~~L~l~~~~~~~~l~~~~ 285 (681)
|++|++++|.. ..+|..+
T Consensus 2 L~~Ldls~n~l-~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNL-TSIPSSF 19 (22)
T ss_dssp ESEEEETSSEE-SEEGTTT
T ss_pred ccEEECCCCcC-EeCChhh
Confidence 55555555533 3555543
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.31 E-value=0.21 Score=27.78 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=5.1
Q ss_pred ccEEEeecccCc
Q 045938 447 LETISISECENL 458 (681)
Q Consensus 447 L~~L~ls~~~~~ 458 (681)
|++|++++|.+.
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444333
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.58 E-value=0.94 Score=26.36 Aligned_cols=17 Identities=35% Similarity=0.800 Sum_probs=11.9
Q ss_pred cCCcceEeeccCccccc
Q 045938 112 FPKLRELHILRCSKLKG 128 (681)
Q Consensus 112 ~~~L~~L~l~~c~~l~~ 128 (681)
+++|++|++++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777777777777663
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=74.38 E-value=2.1 Score=24.78 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=14.4
Q ss_pred CCCCCEEeecCCCCCcccCCC
Q 045938 613 LQNLTHLELEDCPKLKYFPEK 633 (681)
Q Consensus 613 ~~~L~~L~l~~c~~l~~l~~~ 633 (681)
+++|++|++++| .++.+|..
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 367788888876 67777754
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=74.38 E-value=2.1 Score=24.78 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=14.4
Q ss_pred CCCCCEEeecCCCCCcccCCC
Q 045938 613 LQNLTHLELEDCPKLKYFPEK 633 (681)
Q Consensus 613 ~~~L~~L~l~~c~~l~~l~~~ 633 (681)
+++|++|++++| .++.+|..
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 367788888876 67777754
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=52.23 E-value=8.1 Score=22.53 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=12.5
Q ss_pred cccccceEEeccCCcCCCc
Q 045938 5 HKNLEQFCISGYGGAKFPT 23 (681)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~ 23 (681)
|++|+.|++++++...+|+
T Consensus 1 P~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 1 PPSLKELNVSNNQLTSLPE 19 (26)
T ss_pred CcccceeecCCCccccCcc
Confidence 3566777777776666665
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=48.22 E-value=0.59 Score=50.15 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCchh----HHHhcccCCCccEEEeecccCccc----ccCcCc----CcccccEEeeccCCCcee----
Q 045938 421 PSLKSLDVWSCSELES----IAERLDNNTSLETISISECENLKI----LPSGLH----NLRQLQEIGIWECENLVS---- 484 (681)
Q Consensus 421 ~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~ls~~~~~~~----~~~~l~----~l~~L~~L~l~~~~~l~~---- 484 (681)
..+++|++..|..... +...+.....++.++++.|.+... ++..+. ...++++|++.+|.....
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 3477777777765443 345566678888888888877421 222232 366778888887763321
Q ss_pred cCCCCCCCCC-cceEeecccccccc----ccccCccc-CCcceeeecccCCCCC----ccccCCCCCCCceeeeecCcc
Q 045938 485 FPQGGLPCAK-LTRLEISYCKRLQV----LPKGLHNL-TSLQQLTIGEGGELPS----LEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 485 l~~~~~~~~~-L~~L~l~~~~~l~~----~~~~l~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 553 (681)
+...+...+. +.++++..|..-.. ....+..+ ..+++++++.|..... +...+..+++++++.++.|..
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 1111222333 66677777764322 22234444 5678888888876543 334456667888888888876
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.09 E-value=14 Score=39.52 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=37.1
Q ss_pred cccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCC--CCCCcceEEEeCCCCceee
Q 045938 229 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPL--SLSSLREIEIYGCSSLVSF 305 (681)
Q Consensus 229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~--~l~~L~~L~L~~~~~l~~~ 305 (681)
..++.+..++++++ ++..+ ..+..+.+..|+|..|+|++|.....--..+. +...|++|.+.||+-.+.+
T Consensus 215 ~n~p~i~sl~lsnN-rL~~L------d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHL------DALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccc-hhhch------hhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 45666666666664 44444 33444556667777777777633221111222 2335667777776654444
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=44.53 E-value=13 Score=20.94 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=6.9
Q ss_pred CcEEEEcCCCCchh
Q 045938 423 LKSLDVWSCSELES 436 (681)
Q Consensus 423 L~~L~l~~~~~~~~ 436 (681)
|++|++++|.+.+.
T Consensus 4 L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 4 LETLDLSNNQITDE 17 (24)
T ss_dssp -SEEE-TSSBEHHH
T ss_pred CCEEEccCCcCCHH
Confidence 66666666654443
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=31.40 E-value=42 Score=19.60 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=10.3
Q ss_pred CCCCEEeecCCCCCcccC
Q 045938 614 QNLTHLELEDCPKLKYFP 631 (681)
Q Consensus 614 ~~L~~L~l~~c~~l~~l~ 631 (681)
++|+.|+++.| +++.+.
T Consensus 2 ~~L~~L~L~~N-kI~~IE 18 (26)
T smart00365 2 TNLEELDLSQN-KIKKIE 18 (26)
T ss_pred CccCEEECCCC-ccceec
Confidence 46677777765 555543
No 84
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=28.36 E-value=97 Score=20.59 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCCCEEeecCCCCCcccCCCCCcccccEEEeC
Q 045938 614 QNLTHLELEDCPKLKYFPEKGLPSSLLQLYIG 645 (681)
Q Consensus 614 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~ 645 (681)
+++++|.+.+. .-+.+....+++++++|.+.
T Consensus 12 ~~l~~L~~g~~-fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGSS-FNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCCeEEEECCc-cCccCCCCccCCCceEEEee
Confidence 35555555332 33334444455666666554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.62 E-value=27 Score=37.49 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=30.6
Q ss_pred CCCCCcEEEEcCCCCc--hhHHHhcccCCCccEEEeecccCcccccCcCcC--cccccEEeeccCCCcee
Q 045938 419 LPPSLKSLDVWSCSEL--ESIAERLDNNTSLETISISECENLKILPSGLHN--LRQLQEIGIWECENLVS 484 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~--l~~L~~L~l~~~~~l~~ 484 (681)
+|. +..+++++|+.. +.+..--...|+|..|+|++|........++.+ ...|++|.+.+|+.-++
T Consensus 217 ~p~-i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPE-ILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred Ccc-eeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 344 667777766542 222222334566666666666221111111211 23456666666664443
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=20.87 E-value=59 Score=19.16 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=8.9
Q ss_pred CCccEEEeecccCc
Q 045938 445 TSLETISISECENL 458 (681)
Q Consensus 445 ~~L~~L~ls~~~~~ 458 (681)
++|++|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45667777766654
Done!