Query 045938
Match_columns 681
No_of_seqs 242 out of 2955
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 12:07:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.4E-44 1.8E-48 409.1 24.6 383 265-671 294-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-40 7.1E-45 379.4 29.5 130 423-552 420-549 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-36 1.7E-40 340.2 42.7 571 9-651 7-623 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.1E-35 2.4E-39 330.6 36.6 551 5-628 24-623 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.6E-35 1.9E-39 327.0 34.1 512 9-650 15-560 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 9.4E-34 3.2E-38 317.0 37.1 460 9-568 14-507 (606)
7 3t6q_A CD180 antigen; protein- 100.0 8.1E-34 2.8E-38 317.5 35.3 507 5-626 32-559 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-32 4.6E-37 307.6 36.0 521 33-650 13-558 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-30 3.8E-35 302.0 35.3 510 10-650 8-560 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 7.3E-29 2.5E-33 286.8 42.2 513 35-676 8-557 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.1E-29 3.6E-34 282.1 30.8 463 9-568 10-528 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 3.9E-29 1.3E-33 277.6 35.0 455 43-625 18-529 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-29 4.9E-34 279.6 30.2 472 10-625 9-508 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 8.5E-30 2.9E-34 281.5 27.2 473 42-649 15-509 (549)
15 4eco_A Uncharacterized protein 100.0 4E-29 1.4E-33 279.4 22.4 255 227-551 268-546 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 8.8E-28 3E-32 263.3 27.9 211 422-649 248-480 (520)
17 2z7x_B TOLL-like receptor 1, v 100.0 5.2E-27 1.8E-31 257.2 32.9 452 9-553 3-480 (520)
18 4eco_A Uncharacterized protein 100.0 1.2E-28 4.1E-33 275.5 18.3 336 264-650 205-600 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 4.3E-27 1.5E-31 267.2 27.7 287 226-552 509-817 (876)
20 4ecn_A Leucine-rich repeat pro 99.9 3E-26 1E-30 260.3 28.1 336 281-650 440-840 (876)
21 4g8a_A TOLL-like receptor 4; l 99.9 4.2E-25 1.4E-29 248.5 37.1 505 43-649 42-579 (635)
22 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-25 4.3E-30 252.8 31.5 505 17-600 42-577 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.9E-25 2E-29 242.9 34.5 451 7-553 32-509 (562)
24 1jl5_A Outer protein YOPM; leu 99.9 1.4E-26 4.6E-31 247.5 18.7 410 30-568 10-426 (454)
25 1o6v_A Internalin A; bacterial 99.9 2.8E-25 9.7E-30 239.4 27.5 342 203-631 45-391 (466)
26 1jl5_A Outer protein YOPM; leu 99.9 2.8E-26 9.6E-31 245.0 19.3 419 50-649 7-428 (454)
27 3v47_A TOLL-like receptor 5B a 99.9 2.1E-25 7.1E-30 240.2 24.2 139 422-560 276-414 (455)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.5E-25 2.9E-29 241.7 27.1 401 204-649 52-509 (562)
29 1o6v_A Internalin A; bacterial 99.9 1.3E-24 4.5E-29 234.2 26.9 341 229-650 43-388 (466)
30 3v47_A TOLL-like receptor 5B a 99.9 4.4E-25 1.5E-29 237.7 22.4 340 265-649 30-407 (455)
31 4fmz_A Internalin; leucine ric 99.9 1.7E-24 5.8E-29 224.2 22.7 192 418-649 153-345 (347)
32 4fmz_A Internalin; leucine ric 99.9 3.6E-24 1.2E-28 221.8 22.6 297 229-625 41-344 (347)
33 2id5_A Lingo-1, leucine rich r 99.9 1.4E-23 4.8E-28 227.2 25.9 291 264-601 31-331 (477)
34 2id5_A Lingo-1, leucine rich r 99.9 2.1E-23 7E-28 225.9 25.0 306 268-624 14-330 (477)
35 3bz5_A Internalin-J, INLJ; leu 99.9 2E-23 6.8E-28 223.2 24.3 151 417-599 188-348 (457)
36 3o6n_A APL1; leucine-rich repe 99.9 6.3E-23 2.2E-27 215.9 25.0 307 230-649 43-351 (390)
37 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-23 1E-27 221.8 22.6 224 29-347 40-263 (457)
38 3o6n_A APL1; leucine-rich repe 99.9 4.8E-22 1.6E-26 209.2 25.3 306 202-552 43-350 (390)
39 3oja_B Anopheles plasmodium-re 99.9 4.2E-22 1.4E-26 221.3 24.9 299 230-624 49-355 (597)
40 1xku_A Decorin; proteoglycan, 99.9 1.4E-21 4.9E-26 200.5 24.3 239 266-578 32-281 (330)
41 3oja_B Anopheles plasmodium-re 99.9 2.1E-21 7.1E-26 215.7 24.9 307 202-553 49-357 (597)
42 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-21 7.5E-26 199.3 22.5 150 423-578 125-282 (332)
43 1ogq_A PGIP-2, polygalacturona 99.9 3.9E-22 1.3E-26 202.7 12.3 205 418-651 99-305 (313)
44 4fcg_A Uncharacterized protein 99.9 4.4E-21 1.5E-25 196.1 18.4 231 264-551 80-311 (328)
45 1xku_A Decorin; proteoglycan, 99.9 4.1E-20 1.4E-24 189.6 22.5 272 231-552 51-330 (330)
46 3ogk_B Coronatine-insensitive 99.9 9.4E-22 3.2E-26 219.1 10.9 323 203-568 163-523 (592)
47 3ogk_B Coronatine-insensitive 99.9 1.7E-22 5.9E-27 225.1 4.8 390 202-647 110-548 (592)
48 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-20 5.9E-25 192.6 19.4 270 232-552 54-331 (332)
49 4fcg_A Uncharacterized protein 99.8 1.1E-20 3.9E-25 193.0 16.9 213 422-646 82-310 (328)
50 2p1m_B Transport inhibitor res 99.8 3.8E-23 1.3E-27 230.5 -4.7 148 419-567 371-540 (594)
51 1ogq_A PGIP-2, polygalacturona 99.8 8.6E-21 2.9E-25 192.8 11.0 224 265-552 76-302 (313)
52 1z7x_W Ribonuclease inhibitor; 99.8 2.3E-22 7.9E-27 216.8 -2.4 220 423-648 172-438 (461)
53 2p1m_B Transport inhibitor res 99.8 1E-21 3.5E-26 219.0 1.6 64 230-299 182-245 (594)
54 2z80_A TOLL-like receptor 2, v 99.8 8.5E-20 2.9E-24 189.1 15.3 203 423-649 102-313 (353)
55 3zyi_A Leucine-rich repeat-con 99.8 6.1E-19 2.1E-23 189.1 19.3 219 419-648 73-301 (452)
56 2z66_A Variable lymphocyte rec 99.8 5.2E-19 1.8E-23 179.3 17.2 227 264-553 27-260 (306)
57 3zyj_A Leucine-rich repeat-con 99.8 9.6E-19 3.3E-23 186.9 18.8 220 419-649 62-291 (440)
58 2z80_A TOLL-like receptor 2, v 99.8 4.2E-19 1.5E-23 183.9 15.2 282 231-561 30-321 (353)
59 1z7x_W Ribonuclease inhibitor; 99.8 1.7E-21 5.8E-26 210.0 -3.3 333 202-568 26-408 (461)
60 2z66_A Variable lymphocyte rec 99.8 1.3E-18 4.5E-23 176.3 16.0 221 419-649 26-260 (306)
61 3zyi_A Leucine-rich repeat-con 99.8 7.2E-18 2.5E-22 180.7 21.5 104 235-354 57-162 (452)
62 3o53_A Protein LRIM1, AGAP0063 99.8 2.6E-19 8.8E-24 182.3 9.2 235 259-567 28-271 (317)
63 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-17 5.4E-22 182.7 24.1 260 265-629 40-299 (622)
64 3zyj_A Leucine-rich repeat-con 99.8 1.2E-17 4E-22 178.4 22.1 244 234-553 45-291 (440)
65 1ozn_A Reticulon 4 receptor; N 99.8 6.2E-18 2.1E-22 169.4 16.9 150 419-568 30-187 (285)
66 3o53_A Protein LRIM1, AGAP0063 99.8 2.2E-18 7.6E-23 175.4 13.7 204 423-648 36-248 (317)
67 1wwl_A Monocyte differentiatio 99.8 9.6E-20 3.3E-24 185.1 3.3 214 423-649 65-308 (312)
68 3oja_A Leucine-rich immune mol 99.8 6.4E-18 2.2E-22 182.1 16.6 224 256-553 25-249 (487)
69 3oja_A Leucine-rich immune mol 99.8 4.5E-18 1.5E-22 183.3 14.3 207 422-650 35-250 (487)
70 1ozn_A Reticulon 4 receptor; N 99.7 3.4E-17 1.2E-21 164.1 19.3 130 423-553 107-237 (285)
71 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-16 5.5E-21 174.8 23.5 256 6-349 40-295 (622)
72 2xwt_C Thyrotropin receptor; s 99.7 4.2E-17 1.4E-21 158.7 15.3 202 419-650 29-239 (239)
73 2z62_A TOLL-like receptor 4, v 99.7 4.7E-17 1.6E-21 162.2 15.0 197 419-625 26-235 (276)
74 1p9a_G Platelet glycoprotein I 99.7 2.4E-16 8.2E-21 157.8 16.0 176 421-625 31-206 (290)
75 2z62_A TOLL-like receptor 4, v 99.7 3.1E-16 1.1E-20 156.2 16.5 194 445-648 28-235 (276)
76 2xwt_C Thyrotropin receptor; s 99.7 2.7E-16 9.2E-21 153.0 15.6 211 372-626 20-238 (239)
77 4glp_A Monocyte differentiatio 99.7 1.6E-16 5.3E-21 161.2 14.0 217 423-649 66-306 (310)
78 2o6q_A Variable lymphocyte rec 99.7 8.9E-16 3.1E-20 152.2 18.0 180 419-625 35-216 (270)
79 1wwl_A Monocyte differentiatio 99.7 6.5E-17 2.2E-21 164.1 9.7 189 423-625 97-307 (312)
80 2o6q_A Variable lymphocyte rec 99.7 1.1E-15 3.6E-20 151.7 17.1 197 422-649 17-217 (270)
81 1p9a_G Platelet glycoprotein I 99.7 8.9E-16 3.1E-20 153.6 16.5 104 228-347 6-109 (290)
82 3rfs_A Internalin B, repeat mo 99.6 1.2E-16 4.3E-21 158.6 7.1 145 423-568 87-232 (272)
83 3rfs_A Internalin B, repeat mo 99.6 8.6E-16 2.9E-20 152.5 13.2 78 265-347 41-118 (272)
84 4ay9_X Follicle-stimulating ho 99.6 1.3E-14 4.6E-19 149.5 20.1 219 419-647 28-256 (350)
85 4ay9_X Follicle-stimulating ho 99.6 2E-14 6.8E-19 148.2 20.7 156 438-623 97-255 (350)
86 2ast_B S-phase kinase-associat 99.6 9E-17 3.1E-21 165.2 2.9 213 422-648 71-304 (336)
87 1h6u_A Internalin H; cell adhe 99.6 3.1E-15 1E-19 151.3 13.7 190 419-632 40-234 (308)
88 4glp_A Monocyte differentiatio 99.6 1.5E-15 5.2E-20 153.9 11.0 175 423-625 119-305 (310)
89 1h6u_A Internalin H; cell adhe 99.6 8.6E-15 2.9E-19 148.0 13.8 190 384-608 40-234 (308)
90 3m19_A Variable lymphocyte rec 99.5 5.1E-14 1.7E-18 137.9 15.0 149 419-568 33-189 (251)
91 2ast_B S-phase kinase-associat 99.5 2.8E-15 9.6E-20 154.0 4.9 233 265-538 70-314 (336)
92 3m19_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 137.2 14.2 174 423-625 16-190 (251)
93 2ca6_A RAN GTPase-activating p 99.5 2.3E-15 7.8E-20 157.8 0.9 227 383-625 30-314 (386)
94 2ca6_A RAN GTPase-activating p 99.5 3E-15 1E-19 156.9 0.4 108 423-530 161-287 (386)
95 3goz_A Leucine-rich repeat-con 99.5 1.7E-15 5.7E-20 157.2 -2.4 204 416-624 46-294 (362)
96 1h6t_A Internalin B; cell adhe 99.5 1.6E-13 5.4E-18 137.4 11.2 169 423-631 48-216 (291)
97 2o6s_A Variable lymphocyte rec 99.5 2.3E-13 8E-18 129.0 11.8 149 419-568 26-175 (208)
98 4ezg_A Putative uncharacterize 99.5 3.2E-13 1.1E-17 126.8 12.1 141 423-568 46-191 (197)
99 3goz_A Leucine-rich repeat-con 99.5 1E-14 3.6E-19 151.2 1.6 224 416-648 17-295 (362)
100 4ezg_A Putative uncharacterize 99.4 2.3E-13 7.8E-18 127.8 10.5 107 442-552 41-147 (197)
101 1h6t_A Internalin B; cell adhe 99.4 9.3E-13 3.2E-17 131.7 12.3 161 384-568 45-210 (291)
102 2v9t_B SLIT homolog 2 protein 99.4 3.4E-12 1.2E-16 121.9 13.6 134 419-553 30-164 (220)
103 3cvr_A Invasion plasmid antige 99.4 2.6E-12 8.8E-17 139.5 13.9 166 423-631 82-247 (571)
104 3cvr_A Invasion plasmid antige 99.4 4.7E-12 1.6E-16 137.5 15.8 174 446-651 60-244 (571)
105 2o6s_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 120.9 12.7 109 423-539 78-187 (208)
106 3e6j_A Variable lymphocyte rec 99.4 6E-12 2E-16 121.1 13.8 133 419-553 38-171 (229)
107 2v70_A SLIT-2, SLIT homolog 2 99.4 3.9E-12 1.3E-16 121.4 12.3 135 419-553 30-165 (220)
108 1m9s_A Internalin B; cell inva 99.3 3.3E-12 1.1E-16 140.3 12.9 170 441-631 39-213 (605)
109 1m9s_A Internalin B; cell inva 99.3 3.7E-12 1.3E-16 139.9 12.9 54 423-480 155-208 (605)
110 2v9t_B SLIT homolog 2 protein 99.3 8.2E-12 2.8E-16 119.2 12.5 141 424-568 14-162 (220)
111 1xeu_A Internalin C; cellular 99.3 1.6E-12 5.4E-17 127.9 7.0 168 423-631 21-188 (263)
112 2xot_A Amphoterin-induced prot 99.3 8E-12 2.7E-16 129.2 12.6 150 418-568 36-199 (361)
113 3e6j_A Variable lymphocyte rec 99.3 1.8E-11 6.1E-16 117.7 13.9 46 602-648 123-170 (229)
114 2v70_A SLIT-2, SLIT homolog 2 99.3 2.1E-11 7.1E-16 116.4 12.0 143 423-568 13-163 (220)
115 3sb4_A Hypothetical leucine ri 99.3 3.9E-11 1.3E-15 122.4 14.2 123 421-547 202-327 (329)
116 2ell_A Acidic leucine-rich nuc 99.2 5.1E-12 1.7E-16 115.2 6.2 109 419-530 22-133 (168)
117 2xot_A Amphoterin-induced prot 99.2 2E-11 6.8E-16 126.3 11.3 167 423-600 20-199 (361)
118 1dce_A Protein (RAB geranylger 99.2 3.1E-13 1.1E-17 147.6 -2.9 188 417-643 346-566 (567)
119 2ell_A Acidic leucine-rich nuc 99.2 2.5E-11 8.4E-16 110.6 10.0 126 441-568 20-157 (168)
120 1xeu_A Internalin C; cellular 99.2 7.5E-12 2.6E-16 123.0 7.0 140 417-568 38-182 (263)
121 2je0_A Acidic leucine-rich nuc 99.2 5.6E-12 1.9E-16 112.4 2.0 127 421-549 17-148 (149)
122 2je0_A Acidic leucine-rich nuc 99.1 3.3E-11 1.1E-15 107.3 5.7 110 442-553 14-125 (149)
123 1w8a_A SLIT protein; signaling 99.1 1.9E-10 6.5E-15 107.1 9.9 107 446-552 30-137 (192)
124 3sb4_A Hypothetical leucine ri 99.1 4.8E-10 1.6E-14 114.2 12.3 166 468-647 100-307 (329)
125 1w8a_A SLIT protein; signaling 99.1 5.5E-10 1.9E-14 104.0 11.6 114 419-532 27-141 (192)
126 2o6r_A Variable lymphocyte rec 99.0 1E-09 3.6E-14 100.7 10.1 108 445-553 28-136 (177)
127 2wfh_A SLIT homolog 2 protein 99.0 1.3E-09 4.4E-14 101.4 10.2 82 422-504 32-113 (193)
128 2wfh_A SLIT homolog 2 protein 99.0 2E-09 7E-14 100.1 11.5 126 424-553 13-138 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.0 2.9E-10 1E-14 104.3 5.3 124 422-552 20-151 (176)
130 2o6r_A Variable lymphocyte rec 98.9 3.4E-09 1.2E-13 97.2 11.1 113 420-534 27-141 (177)
131 1a9n_A U2A', U2A'; complex (nu 98.9 1E-09 3.5E-14 100.6 7.1 123 440-568 14-150 (176)
132 1ds9_A Outer arm dynein; leuci 98.9 2.3E-11 8E-16 114.1 -7.3 137 423-564 25-180 (198)
133 4fdw_A Leucine rich hypothetic 98.9 3E-07 1E-11 95.7 23.1 104 422-531 249-359 (401)
134 4fdw_A Leucine rich hypothetic 98.8 3.9E-07 1.3E-11 94.8 23.2 169 445-648 203-381 (401)
135 4fs7_A Uncharacterized protein 98.8 2.2E-07 7.7E-12 96.9 20.9 205 423-646 164-375 (394)
136 4b8c_D Glucose-repressible alc 98.8 6.1E-10 2.1E-14 125.5 1.1 124 418-551 245-369 (727)
137 1ds9_A Outer arm dynein; leuci 98.8 7E-11 2.4E-15 110.8 -5.8 125 439-568 12-150 (198)
138 1dce_A Protein (RAB geranylger 98.8 6.1E-09 2.1E-13 113.6 7.4 104 423-531 443-547 (567)
139 4b8c_D Glucose-repressible alc 98.8 6.1E-09 2.1E-13 117.4 7.0 109 423-535 226-334 (727)
140 4fs7_A Uncharacterized protein 98.7 2.6E-06 8.9E-11 88.8 23.5 81 441-526 293-375 (394)
141 3g39_A Variable lymphocyte rec 98.7 6.1E-08 2.1E-12 88.0 8.9 102 423-528 11-113 (170)
142 3g39_A Variable lymphocyte rec 98.6 5.9E-08 2E-12 88.1 8.1 82 422-504 31-113 (170)
143 2r9u_A Variable lymphocyte rec 98.6 1.8E-07 6.1E-12 85.2 10.3 100 424-528 15-116 (174)
144 2r9u_A Variable lymphocyte rec 98.6 8.6E-08 3E-12 87.3 8.2 83 469-552 33-116 (174)
145 3un9_A NLR family member X1; l 98.5 1.4E-08 4.8E-13 104.7 -0.9 146 423-568 74-249 (372)
146 2ra8_A Uncharacterized protein 98.4 6E-07 2E-11 91.7 8.0 183 441-648 135-341 (362)
147 3un9_A NLR family member X1; l 98.3 5.3E-08 1.8E-12 100.3 -0.9 161 386-553 73-251 (372)
148 2ifg_A High affinity nerve gro 98.3 1.4E-06 4.9E-11 89.1 8.3 82 423-505 33-115 (347)
149 2ra8_A Uncharacterized protein 98.3 1.2E-06 4E-11 89.5 7.4 61 419-480 251-318 (362)
150 4gt6_A Cell surface protein; l 98.2 0.00022 7.7E-09 74.0 23.9 123 439-567 259-387 (394)
151 3e4g_A ATP synthase subunit S, 98.2 1E-06 3.4E-11 78.9 5.0 90 204-304 61-154 (176)
152 2ifg_A High affinity nerve gro 98.2 3.1E-06 1.1E-10 86.6 9.3 106 424-531 11-117 (347)
153 4gt6_A Cell surface protein; l 98.2 0.00042 1.4E-08 72.0 25.6 100 537-649 261-369 (394)
154 3e4g_A ATP synthase subunit S, 98.0 1.7E-06 5.8E-11 77.4 2.2 67 286-353 82-154 (176)
155 4h09_A Hypothetical leucine ri 97.9 0.0021 7.1E-08 66.2 24.3 128 490-633 214-350 (379)
156 4h09_A Hypothetical leucine ri 97.8 0.0026 8.9E-08 65.5 23.2 83 440-525 235-318 (379)
157 1io0_A Tropomodulin; LRR prote 97.2 3.9E-05 1.3E-09 70.3 -0.7 36 423-458 38-78 (185)
158 1io0_A Tropomodulin; LRR prote 97.2 0.00011 3.7E-09 67.3 2.2 114 439-552 30-162 (185)
159 3rw6_A Nuclear RNA export fact 97.1 6.8E-05 2.3E-09 72.3 0.1 80 442-523 167-257 (267)
160 3rw6_A Nuclear RNA export fact 96.6 0.00058 2E-08 65.8 2.0 80 418-500 168-258 (267)
161 3rfe_A Platelet glycoprotein I 91.1 0.27 9.1E-06 41.4 5.2 33 615-648 32-66 (130)
162 3rfe_A Platelet glycoprotein I 89.4 0.48 1.6E-05 39.7 5.3 39 587-626 28-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 88.6 0.19 6.5E-06 45.5 2.4 58 423-480 43-109 (197)
164 1pgv_A TMD-1, tropomodulin TMD 83.6 0.53 1.8E-05 42.6 2.6 89 229-322 38-136 (197)
165 2lz0_A Uncharacterized protein 21.1 86 0.0029 24.3 3.7 12 110-121 40-51 (100)
166 2lz0_A Uncharacterized protein 20.3 1.3E+02 0.0046 23.1 4.7 35 588-624 18-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.4e-44 Score=409.09 Aligned_cols=383 Identities=20% Similarity=0.133 Sum_probs=209.1
Q ss_pred CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--CCCCCCceEEEEecCCCCCccccccccCCCC-ccc
Q 045938 265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCDTNS-SLE 341 (681)
Q Consensus 265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~ 341 (681)
++|++|++++|...+.+|..++.+++|++|++++|.....+|. ...+++|++|++++|.....+|..+ ..++ +|+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~ 371 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLL 371 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCS
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH--HhhhcCCc
Confidence 4455555555544444444455555555555554432223331 2334555555555544222333332 2222 455
Q ss_pred eeeeccCCCcccccccc-C--CCCceeEEEeccccccccccc-ccCCCCcceeeeccCCCcccccccCCcchhhhhcccC
Q 045938 342 ILEIWICNSLTYIAGVQ-L--PPSLKWTLTVEEGIQSSSSSR-RYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVG 417 (681)
Q Consensus 342 ~L~l~~c~~l~~~~~~~-~--~~~l~~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 417 (681)
.|++++|.-...++... . .++++ .+.+.++.....++. ...+++|++|+++++. ++. ..+.. ++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-----~~p~~-----l~ 439 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQ-ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSG-----TIPSS-----LG 439 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCC-EEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EES-----CCCGG-----GG
T ss_pred EEEccCCCcCCCcChhhhhcccCCcc-EEECCCCccccccCHHHhcCCCCCEEECcCCc-ccC-----cccHH-----Hh
Confidence 55554432211111110 0 23344 444444433322222 2233455555555532 111 01111 22
Q ss_pred CCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938 418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR 497 (681)
Q Consensus 418 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 497 (681)
.++. |++|++++|...+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|...+.+|..+..+++|++
T Consensus 440 ~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 440 SLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 3333 555666555555555555555556666666655555555555555555666666555544455555555555666
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCc--------------------------------------------
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSL-------------------------------------------- 533 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------------------------------------- 533 (681)
|++++|.....+|..++.+++|+.|++++|...+.+
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 666665555555555555555666655555443333
Q ss_pred --------------------------cccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCc-CCCccc
Q 045938 534 --------------------------EEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMV-SFPPED 579 (681)
Q Consensus 534 --------------------------~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~-~l~~~~ 579 (681)
|..++.+++|++|++++|+. ++++++|+.|++++| .+. .+|...
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N--~l~g~ip~~l 676 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN--DISGSIPDEV 676 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS--CCCSCCCGGG
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC--ccCCCCChHH
Confidence 33355567899999999986 557889999999997 454 667665
Q ss_pred cccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhHHh----hhc
Q 045938 580 IRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAE----KCR 655 (681)
Q Consensus 580 ~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~----~~~ 655 (681)
..+++|++|+++++.--..+|..+..+++|++|++++|+....+|..+.+.++....+.|||.+.. .|.
T Consensus 677 -------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~ 749 (768)
T 3rgz_A 677 -------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCD 749 (768)
T ss_dssp -------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred -------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCC
Confidence 577889999999974334888899999999999999997777788877777777777888875432 688
Q ss_pred cCCCccccccccccee
Q 045938 656 KDGGQYWDLLTHIPKV 671 (681)
Q Consensus 656 ~~~~~~~~~l~~~~~~ 671 (681)
...+++|.+++|.+.+
T Consensus 750 ~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 750 PSNADGYAHHQRSHHH 765 (768)
T ss_dssp SCC-------------
T ss_pred CCccCCCCCCCCcccc
Confidence 8999999999999876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-40 Score=379.39 Aligned_cols=130 Identities=18% Similarity=0.148 Sum_probs=65.3
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|++|++++|...+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|...+.+|..+..+++|++|++++
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC
Confidence 55555555544444444455555555555555555444454455555555555555544334444444455555555555
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 552 (681)
|.....+|.+++.+++|++|++++|...+.+|..++.+++|++|++++|.
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 55444445555555555555555555444444445555555555555443
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.8e-36 Score=340.17 Aligned_cols=571 Identities=16% Similarity=0.090 Sum_probs=360.2
Q ss_pred cceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCCC--CCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938 9 EQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL 86 (681)
Q Consensus 9 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (681)
+.++.++.+...+|..+. +++++|+++++ .++.+++ ++.+++|++|+++++. +..++...++. +++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~----~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-----l~~L 75 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP----TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQK-----LPML 75 (680)
T ss_dssp SEEECCSSCCSSCCSCSC----TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHH-----CTTC
T ss_pred CeeECCCCCccccccccC----CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhc-----ccCc
Confidence 345555555666665432 46777777764 4555553 6667777777776664 55554443333 6677
Q ss_pred ceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCC---CCCCCccEEEEccCCCce---eecCCCCcccE
Q 045938 87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEGCEELL---VSVSSLPSLCK 160 (681)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~i~~~~~~~---~~~~~l~~L~~ 160 (681)
++|+++++ .+...... . +..+++|++|+++++ ++++..| ..+++|++|++++|.... ..+..+++|++
T Consensus 76 ~~L~L~~n-~l~~l~~~-~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 76 KVLNLQHN-ELSQLSDK-T---FAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149 (680)
T ss_dssp CEEECCSS-CCCCCCTT-T---TTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE
T ss_pred CEEECCCC-ccCccChh-h---hccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCE
Confidence 77777654 22222111 1 345677777777664 2332221 235677777777664321 23445677777
Q ss_pred EEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeec
Q 045938 161 FIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIT 240 (681)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 240 (681)
|++++|.........- . ....++|++|++.++.... .....+..+++|+.|++.
T Consensus 150 L~L~~n~l~~~~~~~~--~--------------------~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 150 LLLSNNKIQALKSEEL--D--------------------IFANSSLKKLELSSNQIKE----FSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp EECCSSCCCCBCHHHH--G--------------------GGTTCEESEEECTTCCCCC----BCTTGGGGSSEECEEECT
T ss_pred EEccCCcccccCHHHh--h--------------------ccccccccEEECCCCcccc----cChhhhhhhhhhhhhhcc
Confidence 7777765433221100 0 0013566666666653221 233445666677777776
Q ss_pred CCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCC--cceEEEeCCCCceeec--CCCCCCCceE
Q 045938 241 SCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSS--LREIEIYGCSSLVSFP--EVALPSKLKK 316 (681)
Q Consensus 241 ~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~--L~~L~L~~~~~l~~~~--~~~~~~~L~~ 316 (681)
++. +.. .........+ ..++|++|++++|...+..|..+..++. |++|++++|. +..++ ....+++|++
T Consensus 204 ~~~-l~~---~~~~~~~~~l--~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 276 (680)
T 1ziw_A 204 NVQ-LGP---SLTEKLCLEL--ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEY 276 (680)
T ss_dssp TCC-CHH---HHHHHHHHHH--TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred ccc-cCh---hhHHHHHHHh--hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccE
Confidence 653 211 0000000000 1256777777776665555555555543 7777777664 44443 2344667777
Q ss_pred EEEecCCCCCccccccccCCCCccceeeeccCCCcc-----ccc-----cccCCCCceeEEEeccccccccccc-ccCCC
Q 045938 317 IEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLT-----YIA-----GVQLPPSLKWTLTVEEGIQSSSSSR-RYTSS 385 (681)
Q Consensus 317 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~ 385 (681)
|++++|......+..+ ..+++|+.|+++++..-. .++ .....++++ .+.+.++........ ...++
T Consensus 277 L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~ 353 (680)
T 1ziw_A 277 FFLEYNNIQHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE-HLNMEDNDIPGIKSNMFTGLI 353 (680)
T ss_dssp EECCSCCBSEECTTTT--TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC-EEECCSCCBCCCCTTTTTTCT
T ss_pred eeCCCCccCccChhhh--cCCCCccEEeccchhhhcccccccccccChhhcccCCCCC-EEECCCCccCCCChhHhcccc
Confidence 7777665332233333 566677777766532111 111 012234455 555555543322222 22356
Q ss_pred CcceeeeccCC-CcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccccc-C
Q 045938 386 LLEGLHISRCP-SLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP-S 463 (681)
Q Consensus 386 ~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~ 463 (681)
+|++|+++++. .+.. .+...+. .... ++|+.|++++|...+..+..+..+++|++|++++|.+.+.++ .
T Consensus 354 ~L~~L~Ls~n~~~~~~-l~~~~f~-------~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 354 NLKYLSLSNSFTSLRT-LTNETFV-------SLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp TCCEEECTTCBSCCCE-ECTTTTG-------GGTT-SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred CCcEEECCCCchhhhh-cchhhhc-------cccc-CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 79999998864 1222 1111111 0011 249999999998877777889999999999999999987655 5
Q ss_pred cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccccc--ccccccCcccCCcceeeecccCCCCCccccCCCCC
Q 045938 464 GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRL--QVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPT 541 (681)
Q Consensus 464 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 541 (681)
.+.++++|++|++++|......+..+..+++|++|++++|... ...|..++.+++|+.|++++|...+..+..++.++
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 504 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence 6888999999999999854444556778899999999998754 46788899999999999999987766666688999
Q ss_pred CCceeeeecCcc---------------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccc
Q 045938 542 NLHRLEIIDNKK---------------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL 606 (681)
Q Consensus 542 ~L~~L~l~~~~~---------------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l 606 (681)
+|++|++++|.. +.++++|++|++++| .+..+|.+.+ ...++|+.|+++++ +++.+
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~------~~l~~L~~L~Ls~N-~l~~l 575 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVEVF------KDLFELKIIDLGLN-NLNTL 575 (680)
T ss_dssp TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCSS-CCCCC
T ss_pred ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCCCHHHc------ccccCcceeECCCC-CCCcC
Confidence 999999999976 246789999999998 6778887543 56789999999885 88889
Q ss_pred ccc-ccCCCCCCEEeecCCCCCcccCCCC---CcccccEEEeCCchhHH
Q 045938 607 SSS-IVDLQNLTHLELEDCPKLKYFPEKG---LPSSLLQLYIGGCPLIA 651 (681)
Q Consensus 607 ~~~-~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~~l~ 651 (681)
|.. +..+++|+.|++++| .++.++... .+++|++|++++||..-
T Consensus 576 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCccc
Confidence 875 578999999999998 788777642 46899999999988543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.1e-35 Score=330.57 Aligned_cols=551 Identities=16% Similarity=0.122 Sum_probs=350.7
Q ss_pred cccccceEEeccCCcCCCcc-cccccccceeEEEEeecCCCCCCCC--CCCCCCcceeeecCCccceeeCccccCCCCCc
Q 045938 5 HKNLEQFCISGYGGAKFPTW-FGDSSFLKLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPI 81 (681)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 81 (681)
++++++|+++++....+|.. +. .+++|++|+++++ .+..+++ ++.+++|++|+++++. +..++...++.
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~---- 95 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAF---- 95 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTT----
T ss_pred CCCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc-cCccChhhhcc----
Confidence 36899999999998887764 44 5899999999997 5666653 8899999999999986 88888765554
Q ss_pred cCCCcceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCCC---CCCCccEEEEccCCCcee---e--cC
Q 045938 82 PFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELLV---S--VS 153 (681)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~l~~L~~L~i~~~~~~~~---~--~~ 153 (681)
+++|++|++.++. +...... . +..+++|++|++++|. +++..|. .+++|++|+++++..... . ..
T Consensus 96 -l~~L~~L~L~~n~-l~~~~~~-~---~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 96 -CTNLTELHLMSNS-IQKIKNN-P---FVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp -CTTCSEEECCSSC-CCCCCSC-T---TTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred -CCCCCEEECCCCc-cCccChh-H---ccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 8999999999863 3333211 1 5679999999999963 4433333 578999999998753221 1 22
Q ss_pred CCCcccEEEECCCCCceeeccccccCCCCcceeecCCCccccc---CCCC--CCCCCcceEeecccCCceeeeecccccc
Q 045938 154 SLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLA---GPLK--PRIPKLEELEINDMKEQTYIWKSHNELL 228 (681)
Q Consensus 154 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 228 (681)
..++|++|++++|........ .+.....+.....++..... ..++ ...++|++|.+.++..... ....+
T Consensus 169 ~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~----~~~~~ 242 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEFSPG--CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT----SNTTF 242 (680)
T ss_dssp TTCEESEEECTTCCCCCBCTT--GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE----CTTTT
T ss_pred ccccccEEECCCCcccccChh--hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc----ChhHh
Confidence 468999999999865433211 00001111111110000000 0000 0113445555544432221 11222
Q ss_pred ccccc--ccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCce---
Q 045938 229 QDICS--LKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLV--- 303 (681)
Q Consensus 229 ~~~~~--L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~--- 303 (681)
..++. |+.|++++| .++.+++.. + ..+++|++|++++|...+..|..+..+++|++|++++|..-.
T Consensus 243 ~~l~~~~L~~L~Ls~n-~l~~~~~~~----~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYN-NLNVVGNDS----F----AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp GGGGGSCCCEEECTTS-CCCEECTTT----T----TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred hccCcCCCCEEECCCC-CcCccCccc----c----cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 33322 555555554 333332221 1 122555555555555544444455555555555555432111
Q ss_pred --eec-----CCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCC-ccccccccCCCCceeEEEecccccc
Q 045938 304 --SFP-----EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNS-LTYIAGVQLPPSLKWTLTVEEGIQS 375 (681)
Q Consensus 304 --~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~~l~~~~~~~~ 375 (681)
.+| ....+++|++|++++|. +..++...+ ..+++|+.|++++|.. +..++...
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~----------------- 374 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNET----------------- 374 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTT-----------------
T ss_pred cccccccChhhcccCCCCCEEECCCCc-cCCCChhHh-ccccCCcEEECCCCchhhhhcchhh-----------------
Confidence 111 12234555555555554 222222221 4455555555554321 11111100
Q ss_pred cccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHH-HhcccCCCccEEEeec
Q 045938 376 SSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIA-ERLDNNTSLETISISE 454 (681)
Q Consensus 376 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ls~ 454 (681)
......+.|++|+++++. ++.+.+ . .+..++. |++|++++|...+.++ ..+..+++|++|++++
T Consensus 375 ---f~~~~~~~L~~L~L~~n~-l~~~~~-----~-----~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 375 ---FVSLAHSPLHILNLTKNK-ISKIES-----D-----AFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp ---TGGGTTSCCCEEECTTSC-CCEECT-----T-----TTTTCTT-CCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred ---hcccccCcCceEECCCCC-CCeECh-----h-----hhhCCCC-CCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence 001112468999998853 333111 1 1445555 9999999998776554 6788999999999999
Q ss_pred ccCcccccCcCcCcccccEEeeccCCCc--eecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCC
Q 045938 455 CENLKILPSGLHNLRQLQEIGIWECENL--VSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS 532 (681)
Q Consensus 455 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l--~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~ 532 (681)
|.+....+..+..+++|+.|++++|... +.+|..+..+++|+.|++++|......+..+..+++|++|++++|.....
T Consensus 440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 9988888888999999999999988743 45677888899999999999986655556788999999999999986542
Q ss_pred c----c----ccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEe
Q 045938 533 L----E----EDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMI 597 (681)
Q Consensus 533 ~----~----~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l 597 (681)
. | ..++.+++|++|++++|.. +.++++|+.|++++| .+..+|...+ ..+++|+.|++
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~------~~l~~L~~L~L 591 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN--NLNTLPASVF------NNQVSLKSLNL 591 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEEC
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC--CCCcCCHhHh------CCCCCCCEEEC
Confidence 1 1 2368889999999999976 457899999999998 7778887653 46689999999
Q ss_pred cccCCccccccc-cc-CCCCCCEEeecCCCCCc
Q 045938 598 GNFPNLERLSSS-IV-DLQNLTHLELEDCPKLK 628 (681)
Q Consensus 598 ~~~~~l~~l~~~-~~-~~~~L~~L~l~~c~~l~ 628 (681)
+++ .++.++.. +. .+++|+.|++++||..-
T Consensus 592 ~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 592 QKN-LITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp TTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCC-cCCccChhHhcccccccCEEEccCCCccc
Confidence 996 78888764 44 68999999999986443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.6e-35 Score=326.97 Aligned_cols=512 Identities=15% Similarity=0.148 Sum_probs=293.6
Q ss_pred cceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCC--CCCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938 9 EQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL 86 (681)
Q Consensus 9 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (681)
+.++.++.+...+|..+. .++++|+++++ .++.++ .++.+++|++|+++++. +..+.+..++. +++|
T Consensus 15 ~~~~c~~~~l~~iP~~l~----~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~-----l~~L 83 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP----NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQS-----QHRL 83 (606)
T ss_dssp TEEECTTSCCSSCCTTSC----TTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTT-----CTTC
T ss_pred ceEECCCCCcccCcCCCC----CcCcEEEccCC-ccCcCChhHhccCccceEEECCCCc-cceeChhhccC-----cccc
Confidence 456666667777887654 36889999885 567765 38889999999998886 77776655554 8888
Q ss_pred ceeeccccCCcccccccCCCccccccCCcceEeeccCccccc---cCCCCCCCccEEEEccCCCce---eecCCCCcccE
Q 045938 87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKG---TFPEHLPALEMLVIEGCEELL---VSVSSLPSLCK 160 (681)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---~~~~~l~~L~~L~i~~~~~~~---~~~~~l~~L~~ 160 (681)
++|+++++. +..... .. +..+++|++|+++++. +++ .....+++|++|++++|.... ..+..+++|++
T Consensus 84 ~~L~Ls~n~-l~~~~~-~~---~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 84 DTLVLTANP-LIFMAE-TA---LSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp CEEECTTCC-CSEECT-TT---TSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred CeeeCCCCc-ccccCh-hh---hcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 888888753 222211 11 4668888888888753 331 122346677777777765322 12333667777
Q ss_pred EEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcc--eEeecccCCceeeeecccccccccccccEEe
Q 045938 161 FIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE--ELEINDMKEQTYIWKSHNELLQDICSLKRLT 238 (681)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 238 (681)
|+++++......... ...+++|+ +|.+.++..... +... ....+|+.|+
T Consensus 158 L~L~~n~l~~~~~~~------------------------~~~l~~L~~l~L~l~~n~l~~~----~~~~-~~~~~L~~L~ 208 (606)
T 3t6q_A 158 LDFQNNAIHYLSKED------------------------MSSLQQATNLSLNLNGNDIAGI----EPGA-FDSAVFQSLN 208 (606)
T ss_dssp EECCSSCCCEECHHH------------------------HHTTTTCCSEEEECTTCCCCEE----CTTT-TTTCEEEEEE
T ss_pred EEcccCcccccChhh------------------------hhhhcccceeEEecCCCccCcc----ChhH-hhhccccccc
Confidence 777776544322110 00245555 455555433222 1112 2335667777
Q ss_pred ecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc--CC-CCCCCCC--CcceEEEeCCCCceeecC--CCCC
Q 045938 239 ITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK--LP-QSPLSLS--SLREIEIYGCSSLVSFPE--VALP 311 (681)
Q Consensus 239 l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--l~-~~~~~l~--~L~~L~L~~~~~l~~~~~--~~~~ 311 (681)
+++|..+... ...+. ...++.+.+........ ++ ..+..+. +|+.|++++|. +..++. ...+
T Consensus 209 l~~~~~~~~~--------~~~l~--~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l 277 (606)
T 3t6q_A 209 FGGTQNLLVI--------FKGLK--NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCF 277 (606)
T ss_dssp CTTCSCHHHH--------HHHTT--TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTC
T ss_pred cCCchhHHHH--------hhhcc--ccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccc
Confidence 7666533221 11110 01223333332222111 10 1111111 45566665543 444332 2335
Q ss_pred CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceee
Q 045938 312 SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLH 391 (681)
Q Consensus 312 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 391 (681)
++|++|++++|. +..+|..+ ..+++|+.|++++| .++.++..
T Consensus 278 ~~L~~L~l~~n~-l~~lp~~l--~~l~~L~~L~l~~n-~l~~~~~~---------------------------------- 319 (606)
T 3t6q_A 278 SGLQELDLTATH-LSELPSGL--VGLSTLKKLVLSAN-KFENLCQI---------------------------------- 319 (606)
T ss_dssp TTCSEEECTTSC-CSCCCSSC--CSCTTCCEEECTTC-CCSBGGGG----------------------------------
T ss_pred cCCCEEeccCCc-cCCCChhh--cccccCCEEECccC-CcCcCchh----------------------------------
Confidence 556666665554 44555443 44555555555553 22221110
Q ss_pred eccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHH-HhcccCCCccEEEeecccCcccc--cCcCcCc
Q 045938 392 ISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIA-ERLDNNTSLETISISECENLKIL--PSGLHNL 468 (681)
Q Consensus 392 l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ls~~~~~~~~--~~~l~~l 468 (681)
.+..++. |++|++++|.....++ ..+..+++|++|++++|.+.+.. +..++++
T Consensus 320 -----------------------~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 320 -----------------------SASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp -----------------------CGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred -----------------------hhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 0233333 6666666665543433 23566667777777766665544 5556666
Q ss_pred ccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccc-cCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938 469 RQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPK-GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE 547 (681)
Q Consensus 469 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 547 (681)
++|++|++++|......+..+..+++|++|++++|......+. .+..+++|++|++++|......+..++.+++|++|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 7777777776664444455556666777777777665444333 356667777777777766555555566677777777
Q ss_pred eecCcc----------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcc-cccccccCCCCC
Q 045938 548 IIDNKK----------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLE-RLSSSIVDLQNL 616 (681)
Q Consensus 548 l~~~~~----------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~-~l~~~~~~~~~L 616 (681)
+++|.. +..+++|++|++++| .+..++...+ ..+++|+.|+++++ .+. ..|..+..+++|
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFC--DLSSIDQHAF------TSLKMMNHVDLSHN-RLTSSSIEALSHLKGI 526 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTS--CCCEECTTTT------TTCTTCCEEECCSS-CCCGGGGGGGTTCCSC
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCC--ccCccChhhh------ccccCCCEEECCCC-ccCcCChhHhCccccc
Confidence 777654 335777888888876 4555443222 46678888888886 444 445678889999
Q ss_pred CEEeecCCCCCcccCCC--CCcccccEEEeCCchhH
Q 045938 617 THLELEDCPKLKYFPEK--GLPSSLLQLYIGGCPLI 650 (681)
Q Consensus 617 ~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l 650 (681)
.|++++| .+..++.. ..+++|++|++++||..
T Consensus 527 -~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 527 -YLNLASN-HISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp -EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred -EEECcCC-cccccCHhhcccCCCCCEEeCCCCCcc
Confidence 9999998 55565543 34788999999998754
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.4e-34 Score=317.02 Aligned_cols=460 Identities=15% Similarity=0.099 Sum_probs=272.5
Q ss_pred cceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCCC--CCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938 9 EQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL 86 (681)
Q Consensus 9 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (681)
+.++.++.+...+|..+. +++++|+++++ .++.+++ ++.+++|++|+++++. +..+++..++. +++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~----~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~-----l~~L 82 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP----SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHG-----LHHL 82 (606)
T ss_dssp TEEECTTSCCSSCCTTSC----TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT-----CTTC
T ss_pred CceEccCCCcccCCCCCC----CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhc-----hhhc
Confidence 467777777888888643 68999999985 5677764 8899999999999986 88887665554 8999
Q ss_pred ceeeccccCCcccccccCCCccccccCCcceEeeccCccccccC---CCCCCCccEEEEccCCCc----eeecCCCCccc
Q 045938 87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTF---PEHLPALEMLVIEGCEEL----LVSVSSLPSLC 159 (681)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~l~~L~~L~i~~~~~~----~~~~~~l~~L~ 159 (681)
++|+++++. +..... .. +..+++|++|++++|. +++.. ...+++|++|++++|... ...+..+++|+
T Consensus 83 ~~L~Ls~n~-l~~~~p-~~---~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 83 SNLILTGNP-IQSFSP-GS---FSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp CEEECTTCC-CCCCCT-TS---STTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred CEeECCCCc-ccccCh-hh---cCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 999998753 333322 11 5779999999999864 33122 245789999999988643 34577789999
Q ss_pred EEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCC----cceEeecccCCceeeeeccccccccccccc
Q 045938 160 KFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPK----LEELEINDMKEQTYIWKSHNELLQDICSLK 235 (681)
Q Consensus 160 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 235 (681)
+|++++|........ . ...+.+ +.+|.+.++.... .+...+.. .+|+
T Consensus 157 ~L~Ls~n~l~~~~~~-~-----------------------~~~l~~L~~~l~~L~l~~n~l~~----~~~~~~~~-~~L~ 207 (606)
T 3vq2_A 157 HVDLSYNYIQTITVN-D-----------------------LQFLRENPQVNLSLDMSLNPIDF----IQDQAFQG-IKLH 207 (606)
T ss_dssp EEECCSSCCCEECTT-T-----------------------THHHHHCTTCCCEEECTTCCCCE----ECTTTTTT-CEEE
T ss_pred EEEccCCcceecChh-h-----------------------hhhhhccccccceeeccCCCcce----eCcccccC-ceee
Confidence 999998875443211 0 000111 2356666554322 22333333 3788
Q ss_pred EEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcC--ccc-------CCCCCCCCCCcceEEEeCCCCce-ee
Q 045938 236 RLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQD--LVK-------LPQSPLSLSSLREIEIYGCSSLV-SF 305 (681)
Q Consensus 236 ~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~-------l~~~~~~l~~L~~L~L~~~~~l~-~~ 305 (681)
.|+++++........ ..+ ..+++|+.+++..... ... .+..+..+ .++.+++..+..+. .+
T Consensus 208 ~L~L~~n~~~~~~~~----~~~----~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~ 278 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMK----TCL----QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDI 278 (606)
T ss_dssp EEEEESCCSCHHHHH----HHH----HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGG
T ss_pred eeeccCCccchhHHH----HHh----ccccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccccccc
Confidence 888887632211111 112 2336666666543211 111 11112122 35555553333333 23
Q ss_pred cCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCC
Q 045938 306 PEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSS 385 (681)
Q Consensus 306 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 385 (681)
+....+++|++|+++++. +..++ .+ ..+++|+.|++++|.- +.++.. ..+
T Consensus 279 ~~~~~l~~L~~L~l~~~~-~~~l~-~l--~~~~~L~~L~l~~n~l-~~lp~~-------------------------~l~ 328 (606)
T 3vq2_A 279 VKFHCLANVSAMSLAGVS-IKYLE-DV--PKHFKWQSLSIIRCQL-KQFPTL-------------------------DLP 328 (606)
T ss_dssp GSCGGGTTCSEEEEESCC-CCCCC-CC--CTTCCCSEEEEESCCC-SSCCCC-------------------------CCS
T ss_pred cccccCCCCCEEEecCcc-chhhh-hc--cccccCCEEEcccccC-cccccC-------------------------CCC
Confidence 444556777777777766 45555 22 5667777777777533 444311 122
Q ss_pred CcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchh--HHHhcccCCCccEEEeecccCcccccC
Q 045938 386 LLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELES--IAERLDNNTSLETISISECENLKILPS 463 (681)
Q Consensus 386 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~ls~~~~~~~~~~ 463 (681)
+|++|+++++..+.. .+ +..++. |++|++++|..... ++..+..+++|++|++++|.+.. +|.
T Consensus 329 ~L~~L~l~~n~~~~~-~~------------~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~ 393 (606)
T 3vq2_A 329 FLKSLTLTMNKGSIS-FK------------KVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA 393 (606)
T ss_dssp SCCEEEEESCSSCEE-CC------------CCCCTT-CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECC
T ss_pred ccceeeccCCcCccc-hh------------hccCCC-CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chh
Confidence 466666666543333 11 344444 77777777654433 24556677777777777776544 445
Q ss_pred cCcCcccccEEeeccCCCceecC-CCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCC-ccccCCCCC
Q 045938 464 GLHNLRQLQEIGIWECENLVSFP-QGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS-LEEDDGLPT 541 (681)
Q Consensus 464 ~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~ 541 (681)
.+.++++|+.|++++|......+ ..+..+++|++|++++|......|..++.+++|++|++++|...+. +|..++.++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 66667777777777666333333 3455667777777777776655666666777777777777765542 455566666
Q ss_pred CCceeeeecCcc-------cccCCcccEEEEecc
Q 045938 542 NLHRLEIIDNKK-------IWKFSSLRQLTISGC 568 (681)
Q Consensus 542 ~L~~L~l~~~~~-------~~~l~~L~~L~l~~~ 568 (681)
+|++|++++|.. +.++++|++|++++|
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 666666666654 234555555555554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.1e-34 Score=317.54 Aligned_cols=507 Identities=14% Similarity=0.084 Sum_probs=308.1
Q ss_pred cccccceEEeccCCcCC-CcccccccccceeEEEEeecCCCCCC-C-CCCCCCCcceeeecCCccceeeCccccCCCCCc
Q 045938 5 HKNLEQFCISGYGGAKF-PTWFGDSSFLKLVTLKFEYCGMCPTL-P-SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPI 81 (681)
Q Consensus 5 ~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~c~~l~~l-~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 81 (681)
++++++|+++++....+ |..+. .+++|++|++++| .+..+ | .|+.+++|++|+++++. +..+++..++.
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~---- 103 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSG---- 103 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTST--TCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSS----
T ss_pred CCcCcEEEccCCccCcCChhHhc--cCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcc----
Confidence 46899999999998776 44555 5999999999997 45555 4 39999999999999997 77776655554
Q ss_pred cCCCcceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCCC--CCCCccEEEEccCCCce---eecCCCC
Q 045938 82 PFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPE--HLPALEMLVIEGCEELL---VSVSSLP 156 (681)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~l~~L~~L~i~~~~~~~---~~~~~l~ 156 (681)
+++|++|++.++. +....... +..+++|++|+++++.-.....|. .+++|++|+++++.... ..++.++
T Consensus 104 -l~~L~~L~L~~n~-i~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 104 -PKALKHLFFIQTG-ISSIDFIP----LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp -CTTCCEEECTTSC-CSCGGGSC----CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred -cccccEeeccccC-cccCCcch----hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 8999999999863 33322221 567999999999996432212232 37899999999986432 2466788
Q ss_pred ccc--EEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccc--
Q 045938 157 SLC--KFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDIC-- 232 (681)
Q Consensus 157 ~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-- 232 (681)
+|+ +|++++|......... -...+|++|.+.++..... .+..+.
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~-------------------------~~~~~L~~L~l~~~~~~~~-------~~~~l~~~ 225 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGA-------------------------FDSAVFQSLNFGGTQNLLV-------IFKGLKNS 225 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTT-------------------------TTTCEEEEEECTTCSCHHH-------HHHHTTTC
T ss_pred ccceeEEecCCCccCccChhH-------------------------hhhccccccccCCchhHHH-------Hhhhcccc
Confidence 888 8889988765543220 1235688888887763322 223333
Q ss_pred cccEEeecCCCCccc--cchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC-CC
Q 045938 233 SLKRLTITSCPKLQS--LVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VA 309 (681)
Q Consensus 233 ~L~~L~l~~c~~l~~--l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~ 309 (681)
.++.+.+..+..... +... .+..+ ...+|++|++++|......+..++.+++|++|++++|. ++.+|. ..
T Consensus 226 ~l~~l~~~~~~~~~~~~i~~~----~~~~l--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~ 298 (606)
T 3t6q_A 226 TIQSLWLGTFEDMDDEDISPA----VFEGL--CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLV 298 (606)
T ss_dssp EEEEEECCCCTTSCCCCCCGG----GGGGG--GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCC
T ss_pred chhheechhhccccccccChh----Hhchh--hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhc
Confidence 334444444333222 2111 11111 11378999999988755455568889999999999875 667653 45
Q ss_pred CCCCceEEEEecCCCCCcc-ccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcc
Q 045938 310 LPSKLKKIEIRECDALKSL-PEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLE 388 (681)
Q Consensus 310 ~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~ 388 (681)
.+++|++|++++|. +..+ +..+ ..+++|+.|++++|.....++...+ ...++|+
T Consensus 299 ~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~----------------------~~l~~L~ 353 (606)
T 3t6q_A 299 GLSTLKKLVLSANK-FENLCQISA--SNFPSLTHLSIKGNTKRLELGTGCL----------------------ENLENLR 353 (606)
T ss_dssp SCTTCCEEECTTCC-CSBGGGGCG--GGCTTCSEEECCSCSSCCBCCSSTT----------------------TTCTTCC
T ss_pred ccccCCEEECccCC-cCcCchhhh--hccCcCCEEECCCCCcccccchhhh----------------------hccCcCC
Confidence 68899999999987 4444 4343 6788999999988643323322110 0122466
Q ss_pred eeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccC-cCcC
Q 045938 389 GLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPS-GLHN 467 (681)
Q Consensus 389 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~-~l~~ 467 (681)
+|+++++. ++.+.. .+. .+..++. |++|++++|...+..+..+..+++|++|++++|.+.+..+. .+.+
T Consensus 354 ~L~l~~n~-l~~~~~---~~~-----~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 354 ELDLSHDD-IETSDC---CNL-----QLRNLSH-LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp EEECCSSC-CCEEEE---STT-----TTTTCTT-CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred EEECCCCc-cccccC---cch-----hcccCCC-CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 66655532 221000 000 0333444 66666666655554455566666666666666665544333 2555
Q ss_pred cccccEEeeccCCCceecCCCCCCCCCcceEeecccccccc-c--cccCcccCCcceeeecccCCCCCccccCCCCCCCc
Q 045938 468 LRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQV-L--PKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLH 544 (681)
Q Consensus 468 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~-~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 544 (681)
+++|++|++++|......+..+..+++|++|++++|..... + +..+..+++|++|++++|...+..|..++.+++|+
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 66666666666654433444455566666666666654331 1 13455566666666666655544445455555555
Q ss_pred eeeeecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecC
Q 045938 545 RLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELED 623 (681)
Q Consensus 545 ~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 623 (681)
+|++++|+. ..++.+.+ ...++| .|+++++ .+..++. .+..+++|+.|++++
T Consensus 504 ~L~Ls~N~l-------------------~~~~~~~l------~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 504 HVDLSHNRL-------------------TSSSIEAL------SHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp EEECCSSCC-------------------CGGGGGGG------TTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTT
T ss_pred EEECCCCcc-------------------CcCChhHh------Cccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCC
Confidence 555555543 22222111 233444 5555554 4444443 467788889999998
Q ss_pred CCC
Q 045938 624 CPK 626 (681)
Q Consensus 624 c~~ 626 (681)
|+.
T Consensus 557 N~~ 559 (606)
T 3t6q_A 557 NPL 559 (606)
T ss_dssp CCE
T ss_pred CCc
Confidence 863
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-32 Score=307.63 Aligned_cols=521 Identities=16% Similarity=0.095 Sum_probs=351.8
Q ss_pred eeEEEEeecCCCCCCCC-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccc
Q 045938 33 LVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVER 111 (681)
Q Consensus 33 L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 111 (681)
-++++.++ ..++.+|. +. ++|++|+++++. ++.++...++. +++|++|+++++ .+...... . +..
T Consensus 13 ~~~~~c~~-~~l~~ip~~~~--~~l~~L~Ls~n~-l~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~i~~~-~---~~~ 78 (606)
T 3vq2_A 13 NITYQCMD-QKLSKVPDDIP--SSTKNIDLSFNP-LKILKSYSFSN-----FSELQWLDLSRC-EIETIEDK-A---WHG 78 (606)
T ss_dssp TTEEECTT-SCCSSCCTTSC--TTCCEEECTTSC-CCEECTTTTTT-----CTTCCEEECTTC-CCCEECTT-T---TTT
T ss_pred CCceEccC-CCcccCCCCCC--CCcCEEECCCCC-cCEeChhhccC-----CccCcEEeCCCC-cccccCHH-H---hhc
Confidence 34566655 36788885 43 789999999987 88888765554 889999999875 23333221 1 466
Q ss_pred cCCcceEeeccCccccccCCCCCCCccEEEEccCCCceeecCCCCcccEEEECCCCCceeeccccccCCCCcceeecCCC
Q 045938 112 FPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSN 191 (681)
Q Consensus 112 ~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (681)
+++|++|+++++. +++..|. .+..+++|++|++++|........
T Consensus 79 l~~L~~L~Ls~n~-l~~~~p~------------------~~~~l~~L~~L~L~~n~l~~~~~~----------------- 122 (606)
T 3vq2_A 79 LHHLSNLILTGNP-IQSFSPG------------------SFSGLTSLENLVAVETKLASLESF----------------- 122 (606)
T ss_dssp CTTCCEEECTTCC-CCCCCTT------------------SSTTCTTCCEEECTTSCCCCSSSS-----------------
T ss_pred hhhcCEeECCCCc-ccccChh------------------hcCCcccCCEEEccCCcccccccc-----------------
Confidence 8888888888753 4423343 233344444444444443221100
Q ss_pred cccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEe
Q 045938 192 QVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYID 271 (681)
Q Consensus 192 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~ 271 (681)
....+++|++|.+.++..... .....+..+++|++|+++++ .++.++... +..+......+++|+
T Consensus 123 -------~~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~----~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 123 -------PIGQLITLKKLNVAHNFIHSC---KLPAYFSNLTNLVHVDLSYN-YIQTITVND----LQFLRENPQVNLSLD 187 (606)
T ss_dssp -------CCTTCTTCCEEECCSSCCCCC---CCCGGGGTCTTCCEEECCSS-CCCEECTTT----THHHHHCTTCCCEEE
T ss_pred -------ccCCCCCCCEEeCCCCcccce---echHhHhhcCCCCEEEccCC-cceecChhh----hhhhhccccccceee
Confidence 001234555555554432211 11345688999999999997 666665543 222222223366899
Q ss_pred eeCCcCcccCCCCCCCCCCcceEEEeCCCCcee-ec-CCCCCCCceEEEEecCCC-----CCccccccccCCC--Cccce
Q 045938 272 LRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVS-FP-EVALPSKLKKIEIRECDA-----LKSLPEAWMCDTN--SSLEI 342 (681)
Q Consensus 272 l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~l~~~~~-----l~~~~~~~~~~~~--~~L~~ 342 (681)
+++|.. ..++.......+|++|++++|..... .+ ....+++|+.+++..... +..++...+ ..+ ..++.
T Consensus 188 l~~n~l-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~-~~l~~l~l~~ 265 (606)
T 3vq2_A 188 MSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM-EGLCDVTIDE 265 (606)
T ss_dssp CTTCCC-CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG-TTGGGSEEEE
T ss_pred ccCCCc-ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh-hhhhhccHhh
Confidence 999987 55555554555999999998863222 11 233467777777653221 111111111 111 13455
Q ss_pred eeeccCCCccc-cccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938 343 LEIWICNSLTY-IAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP 421 (681)
Q Consensus 343 L~l~~c~~l~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 421 (681)
+.+..++.+.. ++.....++++ .+.+.++.. ..+......++|++|++++|.- .. ++ . + .++.
T Consensus 266 l~l~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~-lp-----~------~-~l~~ 329 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVKFHCLANVS-AMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQ-FP-----T------L-DLPF 329 (606)
T ss_dssp EEECCCTTCCGGGGSCGGGTTCS-EEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SS-CC-----C------C-CCSS
T ss_pred eeccccccccccccccccCCCCC-EEEecCccc-hhhhhccccccCCEEEcccccC-cc-cc-----c------C-CCCc
Confidence 55544444433 22223345566 666665543 3333444456799999999753 33 22 1 3 4555
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccc--ccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEe
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKI--LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLE 499 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 499 (681)
|++|++++|...... .+..+++|++|++++|.+.+. .+..+..+++|++|++++|. +..++..+..+++|++|+
T Consensus 330 -L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 330 -LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLD 405 (606)
T ss_dssp -CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEE
T ss_pred -cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeE
Confidence 999999999766654 678999999999999988765 36678889999999999988 667888888999999999
Q ss_pred ecccccccccc-ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEeccCC
Q 045938 500 ISYCKRLQVLP-KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISGCDD 570 (681)
Q Consensus 500 l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~~~~ 570 (681)
+++|......+ ..+..+++|++|++++|...+..+..++.+++|++|++++|.. +..+++|++|++++|
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-- 483 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-- 483 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC--
Confidence 99999776666 5788999999999999998888888899999999999999975 447899999999998
Q ss_pred CCcCCCccccccccCCCcccccceeEecccCCcccc-cccccCCCCCCEEeecCCCCCcccCCC-CCc-ccccEEEeCCc
Q 045938 571 DMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL-SSSIVDLQNLTHLELEDCPKLKYFPEK-GLP-SSLLQLYIGGC 647 (681)
Q Consensus 571 ~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~-~~L~~L~i~~c 647 (681)
.+..++...+ ..+++|++|+++++ .+..+ |..+..+++|++|++++| .++.+|.. ..+ ++|++|++++|
T Consensus 484 ~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 484 QLEQISWGVF------DTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CCCEECTTTT------TTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred cCCccChhhh------cccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence 5655554332 56789999999997 56655 778999999999999998 68888875 223 47999999998
Q ss_pred hhH
Q 045938 648 PLI 650 (681)
Q Consensus 648 ~~l 650 (681)
|..
T Consensus 556 ~~~ 558 (606)
T 3vq2_A 556 SVA 558 (606)
T ss_dssp CCC
T ss_pred Ccc
Confidence 754
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=301.97 Aligned_cols=510 Identities=16% Similarity=0.107 Sum_probs=302.8
Q ss_pred ceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCC--CCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcc
Q 045938 10 QFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLE 87 (681)
Q Consensus 10 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~ 87 (681)
..+.++.+....|. + .++|++|+++++ .++.++ .++.+++|++|+++++.....++...++. +++|+
T Consensus 8 ~~dcs~~~L~~vP~-l----p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-----L~~L~ 76 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-V----LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-----LPNLR 76 (844)
T ss_dssp EEEESCCCSSCCCS-S----CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-----CTTCC
T ss_pred EEEccCCCCCCCCC-C----CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC-----CCCCC
Confidence 45666677777887 2 468999999986 566664 38899999999999887677776665554 88999
Q ss_pred eeeccccCCcccccccCCCccccccCCcceEeeccCccccccCC-----CCCCCccEEEEccCCCce----eecCCCCcc
Q 045938 88 TLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFP-----EHLPALEMLVIEGCEELL----VSVSSLPSL 158 (681)
Q Consensus 88 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-----~~l~~L~~L~i~~~~~~~----~~~~~l~~L 158 (681)
+|+++++. +..... .. +..+++|++|++++| ++++..| ..+++|++|++++|.... ..++.+++|
T Consensus 77 ~L~Ls~N~-l~~~~p-~~---~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 77 ILDLGSSK-IYFLHP-DA---FQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp EEECTTCC-CCEECT-TS---SCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred EEECCCCc-CcccCH-hH---ccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 99998753 333222 22 567899999999986 3433333 346777777777765322 245667777
Q ss_pred cEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCC--CCcceEeecccCCceeeeecccccccccc----
Q 045938 159 CKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRI--PKLEELEINDMKEQTYIWKSHNELLQDIC---- 232 (681)
Q Consensus 159 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---- 232 (681)
++|+++++........ . + ..+ ++|+.|.+.++..... .+.. +..++
T Consensus 151 ~~L~Ls~N~i~~~~~~-~------------------l-----~~l~~~~L~~L~L~~n~l~~~---~~~~-~~~~~~~~~ 202 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEH-E------------------L-----EPLQGKTLSFFSLAANSLYSR---VSVD-WGKCMNPFR 202 (844)
T ss_dssp CEEEEESSCCCCCCSG-G------------------G-----HHHHHCSSCCCEECCSBSCCC---CCCC-CCSSSCTTT
T ss_pred CEEECCCCcCCeeCHH-H------------------c-----ccccCCccceEECCCCccccc---cccc-hhhcCCccc
Confidence 7777777653221110 0 0 001 4455555554432221 1111 11122
Q ss_pred --cccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc---------CCCCCCCCCCcceEEEeCCCC
Q 045938 233 --SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK---------LPQSPLSLSSLREIEIYGCSS 301 (681)
Q Consensus 233 --~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~---------l~~~~~~l~~L~~L~L~~~~~ 301 (681)
.|+.|+++++.--..++... ... ...++++.+.++.+..... ....+..+
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~-----~~~-l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l------------- 263 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNF-----SNA-ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL------------- 263 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGG-----GGT-SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT-------------
T ss_pred cCceeEEecCCCcCchhHHHHH-----Hhh-cCcccccceecccccccccccccccCCCChhhhhcc-------------
Confidence 25555555542111111110 000 0113344444432111000 00011111
Q ss_pred ceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccc
Q 045938 302 LVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRR 381 (681)
Q Consensus 302 l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 381 (681)
..++|++|++++|......+..+ ..+++|+.|+++++ .++.+....+
T Consensus 264 --------~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n-~i~~~~~~~~---------------------- 310 (844)
T 3j0a_A 264 --------ARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYN-KINKIADEAF---------------------- 310 (844)
T ss_dssp --------TTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESC-CCCEECTTTT----------------------
T ss_pred --------ccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCC-cCCCCChHHh----------------------
Confidence 12445555555544222122222 44455555555542 2222211110
Q ss_pred cCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccc
Q 045938 382 YTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKIL 461 (681)
Q Consensus 382 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~ 461 (681)
...++|++|+++++. ++.+.+ . .+..++. |++|++++|......+..+..+++|++|++++|.+..
T Consensus 311 ~~l~~L~~L~Ls~N~-l~~~~~-----~-----~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-- 376 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNL-LGELYS-----S-----NFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-- 376 (844)
T ss_dssp TTCSSCCEEEEESCC-CSCCCS-----C-----SCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC--
T ss_pred cCCCCCCEEECCCCC-CCccCH-----H-----HhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc--
Confidence 011235555555532 222100 0 1445555 9999999987655555568889999999999998764
Q ss_pred cCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccc--cCcccCCcceeeecccCCCCCccc-cCC
Q 045938 462 PSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPK--GLHNLTSLQQLTIGEGGELPSLEE-DDG 538 (681)
Q Consensus 462 ~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~-~~~ 538 (681)
+..+++|+.+++++|.. ..+|.. ..+++.+++++|... .++. .+..+++|+.|++++|...+..+. .+.
T Consensus 377 ---i~~~~~L~~L~l~~N~l-~~l~~~---~~~l~~L~ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 377 ---IHFIPSIPDIFLSGNKL-VTLPKI---NLTANLIHLSENRLE-NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp ---CSSCCSCSEEEEESCCC-CCCCCC---CTTCCEEECCSCCCC-SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred ---ccCCCCcchhccCCCCc-cccccc---ccccceeecccCccc-cCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence 33378899999998874 466653 457899999998743 3322 345789999999999986543322 355
Q ss_pred CCCCCceeeeecCcc------------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccc
Q 045938 539 LPTNLHRLEIIDNKK------------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL 606 (681)
Q Consensus 539 ~~~~L~~L~l~~~~~------------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l 606 (681)
.+++|++|++++|.. +.++++|++|++++| .+..++...+ ..+++|+.|+++++ ++..+
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~l 519 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN--YLNSLPPGVF------SHLTALRGLSLNSN-RLTVL 519 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH--HHTTCCTTSS------SSCCSCSEEEEESC-CCSSC
T ss_pred cCCccccccCCCCccccccccccchhhhcCcccccEEECCCC--cccccChhHc------cchhhhheeECCCC-CCCcc
Confidence 678999999999875 346789999999998 6777776543 56788999999996 78888
Q ss_pred cccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhH
Q 045938 607 SSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI 650 (681)
Q Consensus 607 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 650 (681)
+..... ++|+.|++++| .+..++.. .+++|++|++++||..
T Consensus 520 ~~~~~~-~~L~~L~Ls~N-~l~~~~~~-~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 520 SHNDLP-ANLEILDISRN-QLLAPNPD-VFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCCC-SCCCEEEEEEE-CCCCCCSC-CCSSCCEEEEEEECCC
T ss_pred Chhhhh-ccccEEECCCC-cCCCCChh-HhCCcCEEEecCCCcc
Confidence 764443 89999999998 55554443 3568999999987743
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=7.3e-29 Score=286.76 Aligned_cols=513 Identities=15% Similarity=0.101 Sum_probs=323.3
Q ss_pred EEEEeecCCCCCCCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCC
Q 045938 35 TLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPK 114 (681)
Q Consensus 35 ~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 114 (681)
..+.++| +++.+|. ..++|++|+++++. ++.+....++. +++|+.|+++++........ .. +..+++
T Consensus 8 ~~dcs~~-~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~-----l~~L~~LdLs~n~~~~~i~~-~~---f~~L~~ 74 (844)
T 3j0a_A 8 IAFYRFC-NLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPF-----LEQLQLLELGSQYTPLTIDK-EA---FRNLPN 74 (844)
T ss_dssp EEEESCC-CSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSS-----CCSCSEEEECTTCCCCEECT-TT---TSSCTT
T ss_pred EEEccCC-CCCCCCC--CCCCcCEEECCCCc-CCccChhHCcc-----cccCeEEeCCCCCCccccCH-HH---hcCCCC
Confidence 4555564 6888988 66899999999987 88887665554 89999999988644333222 12 567888
Q ss_pred cceEeeccCccccccCCC---CCCCccEEEEccCCCcee-----ecCCCCcccEEEECCCCCceeeccccccCCCCccee
Q 045938 115 LRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELLV-----SVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVC 186 (681)
Q Consensus 115 L~~L~l~~c~~l~~~~~~---~l~~L~~L~i~~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 186 (681)
|+.|+++++. +.+..|. .+++|++|++++|..... .+..++
T Consensus 75 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~------------------------------ 123 (844)
T 3j0a_A 75 LRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK------------------------------ 123 (844)
T ss_dssp CCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS------------------------------
T ss_pred CCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC------------------------------
Confidence 8888888853 3323333 334555555555432110 133344
Q ss_pred ecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCC
Q 045938 187 RDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCI 266 (681)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~ 266 (681)
+|++|++.++..... .+...+..+++|++|+++++ .++.+.....+ .+. .++
T Consensus 124 ------------------~L~~L~Ls~N~l~~~---~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~----~l~--~~~ 175 (844)
T 3j0a_A 124 ------------------ALTRLDLSKNQIRSL---YLHPSFGKLNSLKSIDFSSN-QIFLVCEHELE----PLQ--GKT 175 (844)
T ss_dssp ------------------SCCEEEEESCCCCCC---CCCGGGGTCSSCCEEEEESS-CCCCCCSGGGH----HHH--HCS
T ss_pred ------------------CCCEEECCCCccccc---ccchhHhhCCCCCEEECCCC-cCCeeCHHHcc----ccc--CCc
Confidence 444444444332221 22234678888888888886 44443333211 111 168
Q ss_pred ccEEeeeCCcCcccCCCCCCCCCC------cceEEEeCCCCceeec----CCCCCCCceEEEEecCCC--------CCcc
Q 045938 267 LEYIDLRDCQDLVKLPQSPLSLSS------LREIEIYGCSSLVSFP----EVALPSKLKKIEIRECDA--------LKSL 328 (681)
Q Consensus 267 L~~L~l~~~~~~~~l~~~~~~l~~------L~~L~L~~~~~l~~~~----~~~~~~~L~~L~l~~~~~--------l~~~ 328 (681)
|+.|++++|......|..++.+++ |++|++++|..-...+ ......+++.+.+..+.. +...
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 899999988887767766666655 8888888875222221 122235677777663221 1111
Q ss_pred ccccc-cCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCc
Q 045938 329 PEAWM-CDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNEL 407 (681)
Q Consensus 329 ~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 407 (681)
....+ ....++|+.|+++++ .+..+....+ ...++|++|+++++ .++.+.+
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~----------------------~~l~~L~~L~L~~n-~i~~~~~---- 307 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHG-FVFSLNSRVF----------------------ETLKDLKVLNLAYN-KINKIAD---- 307 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTC-CCCEECSCCS----------------------SSCCCCCEEEEESC-CCCEECT----
T ss_pred ChhhhhccccCCccEEECCCC-cccccChhhh----------------------hcCCCCCEEECCCC-cCCCCCh----
Confidence 11111 012356777777664 3333221111 12335888888774 3333111
Q ss_pred chhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC
Q 045938 408 PATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ 487 (681)
Q Consensus 408 ~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 487 (681)
+ .+..++. |++|++++|...+..+..+..+++|++|++++|.+....+..+.++++|+.|++++|. +..++.
T Consensus 308 -~-----~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~ 379 (844)
T 3j0a_A 308 -E-----AFYGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF 379 (844)
T ss_dssp -T-----TTTTCSS-CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS
T ss_pred -H-----HhcCCCC-CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccC
Confidence 0 1444555 8888888887766666778888888899988888877667778888888889888876 333432
Q ss_pred CCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCC-ccccCCCCCCCceeeeecCcc--------cccCC
Q 045938 488 GGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS-LEEDDGLPTNLHRLEIIDNKK--------IWKFS 558 (681)
Q Consensus 488 ~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~--------~~~l~ 558 (681)
+++|+.|++++|.. ..+|.. ..+++.|++++|...+. .+..++.+++|++|++++|.. ...++
T Consensus 380 ----~~~L~~L~l~~N~l-~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 451 (844)
T 3j0a_A 380 ----IPSIPDIFLSGNKL-VTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451 (844)
T ss_dssp ----CCSCSEEEEESCCC-CCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred ----CCCcchhccCCCCc-cccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence 67888888888874 355543 46788889988875542 222356789999999999986 23578
Q ss_pred cccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCCCCcc
Q 045938 559 SLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKGLPS 637 (681)
Q Consensus 559 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 637 (681)
+|+.|++++| .+..++... ........+++|+.|+++++ .+..++. .+..+++|+.|++++| .++.+|...+.+
T Consensus 452 ~L~~L~Ls~N--~l~~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~ 526 (844)
T 3j0a_A 452 SLEQLFLGEN--MLQLAWETE-LCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPA 526 (844)
T ss_dssp TCCBCEEESC--CCSSSCCSC-CCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCS
T ss_pred ccccccCCCC--ccccccccc-cchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCC-CCCccChhhhhc
Confidence 9999999997 443332211 00011245688999999996 7777776 5789999999999998 788888877779
Q ss_pred cccEEEeCCchhHHhhhccCCCcccccccccceeEEccE
Q 045938 638 SLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFK 676 (681)
Q Consensus 638 ~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 676 (681)
+|+.|++++|..-.. .. ..+..++.+.+.+|
T Consensus 527 ~L~~L~Ls~N~l~~~-----~~---~~~~~L~~l~l~~N 557 (844)
T 3j0a_A 527 NLEILDISRNQLLAP-----NP---DVFVSLSVLDITHN 557 (844)
T ss_dssp CCCEEEEEEECCCCC-----CS---CCCSSCCEEEEEEE
T ss_pred cccEEECCCCcCCCC-----Ch---hHhCCcCEEEecCC
Confidence 999999999864321 11 12345666666554
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=282.12 Aligned_cols=463 Identities=16% Similarity=0.103 Sum_probs=307.6
Q ss_pred cceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCC--CCCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938 9 EQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL 86 (681)
Q Consensus 9 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (681)
...+.++.+...+|..+. +++++|+++++ .++.++ .++.+++|++|++++|. +..++...++. +++|
T Consensus 10 ~~~~c~~~~l~~ip~~l~----~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~-----l~~L 78 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLP----FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQS-----LSHL 78 (570)
T ss_dssp TEEECCSSCCSSCCSSSC----SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTT-----CTTC
T ss_pred cEEEeCCCCccccCCCcc----ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCc-CCccCcccccC-----chhC
Confidence 346666666777887543 47999999986 567776 48999999999999986 88887766555 8999
Q ss_pred ceeeccccCCcccccccCCCccccccCCcceEeeccCcccccc---CCCCCCCccEEEEccCCCc----eeecCCCCccc
Q 045938 87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGT---FPEHLPALEMLVIEGCEEL----LVSVSSLPSLC 159 (681)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~---~~~~l~~L~~L~i~~~~~~----~~~~~~l~~L~ 159 (681)
++|++.+.. +..... .. +..+++|++|+++++ +++.. ....+++|++|++++|... ...++.+++|+
T Consensus 79 ~~L~L~~n~-l~~~~~-~~---~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 79 STLILTGNP-IQSLAL-GA---FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp CEEECTTCC-CCEECT-TT---TTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CEEeCcCCc-CCccCH-hh---hcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCC
Confidence 999998853 333221 12 567999999999986 34311 1235789999999988532 34677799999
Q ss_pred EEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCc----ceEeecccCCceeeeeccccccccccccc
Q 045938 160 KFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKL----EELEINDMKEQTYIWKSHNELLQDICSLK 235 (681)
Q Consensus 160 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 235 (681)
+|+++++........ . ...+.+| ++|.+.++..... ..+.+... +|+
T Consensus 153 ~L~l~~n~l~~~~~~-~-----------------------~~~l~~L~~~~~~L~l~~n~l~~~----~~~~~~~~-~L~ 203 (570)
T 2z63_A 153 HLDLSSNKIQSIYCT-D-----------------------LRVLHQMPLLNLSLDLSLNPMNFI----QPGAFKEI-RLH 203 (570)
T ss_dssp EEECTTSCCCEECGG-G-----------------------GHHHHTCTTCCCEEECTTCCCCEE----CTTTTTTC-EEE
T ss_pred EEeCcCCccceecHH-H-----------------------ccchhccchhhhhcccCCCCceec----CHHHhccC-cce
Confidence 999998875443211 0 0012344 5667766543332 23333433 899
Q ss_pred EEeecCCCCccccchhhHHHHHHhhhhccCC--------------------------------ccEEeeeCC-cCcccCC
Q 045938 236 RLTITSCPKLQSLVAEEEKDQQQQLCQLSCI--------------------------------LEYIDLRDC-QDLVKLP 282 (681)
Q Consensus 236 ~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~--------------------------------L~~L~l~~~-~~~~~l~ 282 (681)
.|+++++..-... ....+..+ ++ ++.++++++ ......+
T Consensus 204 ~L~l~~n~~~~~~----~~~~~~~l----~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 275 (570)
T 2z63_A 204 KLTLRNNFDSLNV----MKTCIQGL----AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275 (570)
T ss_dssp EEEEESCCSCTTH----HHHHHHTT----TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST
T ss_pred eEecccccccccc----hhhhhcCc----cccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch
Confidence 9999886321110 00111111 22 344444444 2223345
Q ss_pred CCCCCCCCcceEEEeCCCCceeecCC-CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCC
Q 045938 283 QSPLSLSSLREIEIYGCSSLVSFPEV-ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPP 361 (681)
Q Consensus 283 ~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 361 (681)
..+..+++|++|++++|. +..++.. ..+ +|++|++++|. +..+|. ..+++|+.|+++++.....+
T Consensus 276 ~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~----~~l~~L~~L~l~~n~~~~~~------- 341 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCK-FGQFPT----LKLKSLKRLTFTSNKGGNAF------- 341 (570)
T ss_dssp TTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCB-CSSCCB----CBCSSCCEEEEESCBSCCBC-------
T ss_pred hhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCc-ccccCc----ccccccCEEeCcCCcccccc-------
Confidence 555566666666666554 4444422 223 66666666665 334443 24556666666654322211
Q ss_pred CceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhc
Q 045938 362 SLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERL 441 (681)
Q Consensus 362 ~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l 441 (681)
.. ..+++|++|+++++. ++... ..+.. +..++. |++|++++|...+. +..+
T Consensus 342 -----------------~~-~~~~~L~~L~l~~n~-l~~~~---~~~~~-----~~~~~~-L~~L~l~~n~l~~~-~~~~ 392 (570)
T 2z63_A 342 -----------------SE-VDLPSLEFLDLSRNG-LSFKG---CCSQS-----DFGTTS-LKYLDLSFNGVITM-SSNF 392 (570)
T ss_dssp -----------------CC-CBCTTCCEEECCSSC-CBEEE---EEEHH-----HHTCSC-CCEEECCSCSEEEE-EEEE
T ss_pred -----------------cc-ccCCCCCEEeCcCCc-cCccc---ccccc-----ccccCc-cCEEECCCCccccc-cccc
Confidence 11 234578899988753 33210 00111 344555 99999999865543 4448
Q ss_pred ccCCCccEEEeecccCccccc-CcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccccc-ccccccCcccCCc
Q 045938 442 DNNTSLETISISECENLKILP-SGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRL-QVLPKGLHNLTSL 519 (681)
Q Consensus 442 ~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l-~~~~~~l~~l~~L 519 (681)
..+++|++|++++|.+.+..+ ..+.++++|++|++++|......+..+..+++|++|++++|... ..+|..+..+++|
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 899999999999998877655 46788999999999999866667777788899999999999865 4688888999999
Q ss_pred ceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938 520 QQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC 568 (681)
Q Consensus 520 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~ 568 (681)
++|++++|...+..|..++.+++|++|++++|.. +.++++|++|++++|
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 9999999987776677788999999999999976 447899999999997
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.9e-29 Score=277.61 Aligned_cols=455 Identities=16% Similarity=0.168 Sum_probs=251.4
Q ss_pred CCCCCCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCCcceEeecc
Q 045938 43 MCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILR 122 (681)
Q Consensus 43 ~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 122 (681)
.++++|. .-.+++++|+++++. ++.++...+.. +++|++|+++++. +...... . +..+++|++|++++
T Consensus 18 ~l~~ip~-~l~~~l~~L~Ls~n~-l~~~~~~~~~~-----l~~L~~L~Ls~n~-i~~i~~~-~---~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 18 NFYKIPD-NLPFSTKNLDLSFNP-LRHLGSYSFFS-----FPELQVLDLSRCE-IQTIEDG-A---YQSLSHLSTLILTG 85 (570)
T ss_dssp CCSSCCS-SSCSSCCEEECCSCC-CCEECTTTTTT-----CSSCCEEECTTCC-CCEECTT-T---TTTCTTCCEEECTT
T ss_pred CccccCC-CccccccEEEccCCc-cCccChhHhhC-----CCCceEEECCCCc-CCccCcc-c---ccCchhCCEEeCcC
Confidence 5677775 223689999999997 88887765554 9999999999873 4433222 2 56799999999998
Q ss_pred CccccccCC---CCCCCccEEEEccCCCce---eecCCCCcccEEEECCCCCceeeccccccCCCCcceeecCCCccccc
Q 045938 123 CSKLKGTFP---EHLPALEMLVIEGCEELL---VSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLA 196 (681)
Q Consensus 123 c~~l~~~~~---~~l~~L~~L~i~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (681)
+. ++...| ..+++|++|+++++.... ..+..+++|++|++++|......
T Consensus 86 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~------------------------ 140 (570)
T 2z63_A 86 NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK------------------------ 140 (570)
T ss_dssp CC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC------------------------
T ss_pred Cc-CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec------------------------
Confidence 64 442222 345677777777664221 13555666666666666432210
Q ss_pred CCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCc----cEEee
Q 045938 197 GPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCIL----EYIDL 272 (681)
Q Consensus 197 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L----~~L~l 272 (681)
....+..+++|++|+++++ .++.++... +..+ ++| +++++
T Consensus 141 ---------------------------lp~~~~~l~~L~~L~l~~n-~l~~~~~~~----~~~l----~~L~~~~~~L~l 184 (570)
T 2z63_A 141 ---------------------------LPEYFSNLTNLEHLDLSSN-KIQSIYCTD----LRVL----HQMPLLNLSLDL 184 (570)
T ss_dssp ---------------------------CCGGGGGCTTCCEEECTTS-CCCEECGGG----GHHH----HTCTTCCCEEEC
T ss_pred ---------------------------ChhhhcccCCCCEEeCcCC-ccceecHHH----ccch----hccchhhhhccc
Confidence 0122344455555555544 333332221 1111 222 44555
Q ss_pred eCCcCcccCCCCCCCCCCcceEEEeCCC------------------------------CceeecCCCC--C--CCceEEE
Q 045938 273 RDCQDLVKLPQSPLSLSSLREIEIYGCS------------------------------SLVSFPEVAL--P--SKLKKIE 318 (681)
Q Consensus 273 ~~~~~~~~l~~~~~~l~~L~~L~L~~~~------------------------------~l~~~~~~~~--~--~~L~~L~ 318 (681)
++|......+..+... +|++|++++|. .+..++.... + -.++.++
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 5544422223223222 45555554431 1111111110 1 1244555
Q ss_pred EecCCCCCc-cccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCC
Q 045938 319 IRECDALKS-LPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPS 397 (681)
Q Consensus 319 l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 397 (681)
+.++..+.. .+..+ ..+++|+.|+++++ .++.++.. .... +|++|+++++.
T Consensus 264 l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~-~l~~l~~~-----------------------~~~~-~L~~L~l~~n~- 315 (570)
T 2z63_A 264 LAYLDYYLDDIIDLF--NCLTNVSSFSLVSV-TIERVKDF-----------------------SYNF-GWQHLELVNCK- 315 (570)
T ss_dssp EEETTEEESCSTTTT--GGGTTCSEEEEESC-EECSCCBC-----------------------CSCC-CCSEEEEESCB-
T ss_pred hhcchhhhhhchhhh--cCcCcccEEEecCc-cchhhhhh-----------------------hccC-CccEEeeccCc-
Confidence 555422222 22222 44566666666654 23332211 0111 47777777653
Q ss_pred cccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccc--cCcCcCcccccEEe
Q 045938 398 LTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKIL--PSGLHNLRQLQEIG 475 (681)
Q Consensus 398 l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~--~~~l~~l~~L~~L~ 475 (681)
+.. ++ ...++. |++|++++|......+. ..+++|++|++++|.+.... +..+.++++|++|+
T Consensus 316 ~~~-l~------------~~~l~~-L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 316 FGQ-FP------------TLKLKS-LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp CSS-CC------------BCBCSS-CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred ccc-cC------------cccccc-cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence 222 22 223444 88888887765544432 67778888888887766543 45566778888888
Q ss_pred eccCCCceecCCCCCCCCCcceEeecccccccccc-ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-
Q 045938 476 IWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLP-KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK- 553 (681)
Q Consensus 476 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~- 553 (681)
+++|. +..++..+..+++|++|++++|......+ ..+..+++|++|++++|...+..+..++.+++|++|++++|..
T Consensus 380 l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 380 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp CCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc
Confidence 88776 33444446667788888888877555444 3567778888888888876666666677788888888888764
Q ss_pred -------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCC
Q 045938 554 -------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCP 625 (681)
Q Consensus 554 -------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 625 (681)
+..+++|++|++++| .+..++...+ ..+++|+.|+++++ .+..++. .+..+++|+.|++++|+
T Consensus 459 ~~~~p~~~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 459 ENFLPDIFTELRNLTFLDLSQC--QLEQLSPTAF------NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp GGEECSCCTTCTTCCEEECTTS--CCCEECTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccchhhhhcccCCCEEECCCC--ccccCChhhh------hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 235666777777665 3333321111 23344555555543 3444433 34455555555555553
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.4e-29 Score=279.63 Aligned_cols=472 Identities=17% Similarity=0.196 Sum_probs=262.0
Q ss_pred ceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCC--CCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcc
Q 045938 10 QFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLE 87 (681)
Q Consensus 10 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~ 87 (681)
+-+.++.+...+|..+ .++|++|+++++ .++.++ .++.+++|++|+++++. +..++.+.++. +++|+
T Consensus 9 ~c~~~~~~l~~ip~~~----~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~-----l~~L~ 77 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGL----TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYS-----LGSLE 77 (549)
T ss_dssp EEECTTSCCSSCCSCC----CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTT-----CTTCC
T ss_pred eEECCCCccccccccC----CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChhhccc-----cccCC
Confidence 3455666677777754 367888888886 466664 38888888888888886 77776554444 77888
Q ss_pred eeeccccCCcccccccCCCccccccCCcceEeeccCccccc-cCCCCCCCccEEEEccCCCceeecCCCCcccEEEECCC
Q 045938 88 TLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKG-TFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGC 166 (681)
Q Consensus 88 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~ 166 (681)
+|+++++. +...... .+..+++|++|+++++. +++ ..|. .+..+++|++|++++|
T Consensus 78 ~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~------------------~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 78 HLDLSDNH-LSSLSSS----WFGPLSSLKYLNLMGNP-YQTLGVTS------------------LFPNLTNLQTLRIGNV 133 (549)
T ss_dssp EEECTTSC-CCSCCHH----HHTTCTTCCEEECTTCC-CSSSCSSC------------------SCTTCTTCCEEEEEES
T ss_pred EEECCCCc-cCccCHH----HhccCCCCcEEECCCCc-ccccchhh------------------hhhccCCccEEECCCC
Confidence 88887752 2222111 13456777777777653 221 1111 2333445555555544
Q ss_pred CCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCcc
Q 045938 167 KKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQ 246 (681)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 246 (681)
......... ....+++|++|++.++.... .....+..+++|++|+++++ .+.
T Consensus 134 ~~~~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n-~~~ 185 (549)
T 2z81_A 134 ETFSEIRRI-----------------------DFAGLTSLNELEIKALSLRN----YQSQSLKSIRDIHHLTLHLS-ESA 185 (549)
T ss_dssp SSCCEECTT-----------------------TTTTCCEEEEEEEEETTCCE----ECTTTTTTCSEEEEEEEECS-BST
T ss_pred ccccccCHh-----------------------hhhcccccCeeeccCCcccc----cChhhhhccccCceEecccC-ccc
Confidence 321111000 00123444444444443222 12233466778888888776 333
Q ss_pred ccchhhHHHHHHhhhhccCCccEEeeeCCcCcccC--CC-CCCCCCCcceEEEeCCCCceeec------CCCCCCCceEE
Q 045938 247 SLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKL--PQ-SPLSLSSLREIEIYGCSSLVSFP------EVALPSKLKKI 317 (681)
Q Consensus 247 ~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l--~~-~~~~l~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L 317 (681)
.++.. ....+++|++|++++|...+.. +. ....+++|+.|++++|. +.... ....+++|+.+
T Consensus 186 ~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 186 FLLEI--------FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp THHHH--------HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEE
T ss_pred ccchh--------hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc-cchhHHHHHHHHhhhhcccccc
Confidence 33221 1122477777777777653321 11 12345666666666553 22110 11223455555
Q ss_pred EEecCCCCCcccccc-----ccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeee
Q 045938 318 EIRECDALKSLPEAW-----MCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHI 392 (681)
Q Consensus 318 ~l~~~~~l~~~~~~~-----~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l 392 (681)
++++|. +..++... ....+. +++.+++
T Consensus 257 ~l~~~~-~~~~~~~~~~~~~~~~~l~-----------------------------------------------~L~~L~l 288 (549)
T 2z81_A 257 EFDDCT-LNGLGDFNPSESDVVSELG-----------------------------------------------KVETVTI 288 (549)
T ss_dssp EEESCE-EECCSCCCCCTTTCCCCCT-----------------------------------------------TCCEEEE
T ss_pred cccccc-ccccccccccchhhhhhhc-----------------------------------------------ccccccc
Confidence 555543 11110000 001122 3444444
Q ss_pred ccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhc-ccCCCccEEEeecccCccccc---CcCcCc
Q 045938 393 SRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERL-DNNTSLETISISECENLKILP---SGLHNL 468 (681)
Q Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~ls~~~~~~~~~---~~l~~l 468 (681)
.++. +........++. ......+|++|++++|.. ..+|..+ ..+++|++|++++|.+.+..| ..++.+
T Consensus 289 ~~~~-i~~~~~~~~l~~------~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 289 RRLH-IPQFYLFYDLST------VYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp ESCB-CSCGGGSCCCCH------HHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred cccc-cchhhhcccchh------hhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 4422 111000001110 001112488888888754 3455444 468888888888888776553 346677
Q ss_pred ccccEEeeccCCCceecC---CCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCce
Q 045938 469 RQLQEIGIWECENLVSFP---QGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHR 545 (681)
Q Consensus 469 ~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 545 (681)
++|++|++++|.. ..++ ..+..+++|++|++++|. +..+|..++.+++|++|++++|... .++.. .+++|++
T Consensus 361 ~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~--~~~~L~~ 435 (549)
T 2z81_A 361 PSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKTC--IPQTLEV 435 (549)
T ss_dssp TTCCEEECTTSCC-CCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCS-CCCTT--SCTTCSE
T ss_pred ccCcEEEccCCcc-cccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcc-cccch--hcCCceE
Confidence 8888888888763 3332 235567788888888886 4467777777888888888888743 34332 2367888
Q ss_pred eeeecCcc---cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEee
Q 045938 546 LEIIDNKK---IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLEL 621 (681)
Q Consensus 546 L~l~~~~~---~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l 621 (681)
|++++|+. ...+++|++|++++| .+..+|... .+++|+.|+++++ +++.++. .+..+++|+.|++
T Consensus 436 L~Ls~N~l~~~~~~l~~L~~L~Ls~N--~l~~ip~~~--------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 436 LDVSNNNLDSFSLFLPRLQELYISRN--KLKTLPDAS--------LFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSS--CCSSCCCGG--------GCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEEC
T ss_pred EECCCCChhhhcccCChhcEEECCCC--ccCcCCCcc--------cCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEe
Confidence 88887765 336777888888876 555666532 4566777777764 5555554 3566777777777
Q ss_pred cCCC
Q 045938 622 EDCP 625 (681)
Q Consensus 622 ~~c~ 625 (681)
++|+
T Consensus 505 ~~N~ 508 (549)
T 2z81_A 505 HTNP 508 (549)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7765
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=8.5e-30 Score=281.47 Aligned_cols=473 Identities=15% Similarity=0.144 Sum_probs=296.0
Q ss_pred CCCCCCCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCCcceEeec
Q 045938 42 GMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHIL 121 (681)
Q Consensus 42 ~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 121 (681)
+.++.+|. +..++|++|+++++. ++.++...++. +++|++|+++++. +...... . +..+++|++|+++
T Consensus 15 ~~l~~ip~-~~~~~L~~L~Ls~n~-l~~~~~~~~~~-----l~~L~~L~Ls~n~-i~~~~~~-~---~~~l~~L~~L~Ls 82 (549)
T 2z81_A 15 RSFTSIPS-GLTAAMKSLDLSFNK-ITYIGHGDLRA-----CANLQVLILKSSR-INTIEGD-A---FYSLGSLEHLDLS 82 (549)
T ss_dssp SCCSSCCS-CCCTTCCEEECCSSC-CCEECSSTTSS-----CTTCCEEECTTSC-CCEECTT-T---TTTCTTCCEEECT
T ss_pred Cccccccc-cCCCCccEEECcCCc-cCccChhhhhc-----CCcccEEECCCCC-cCccChh-h---ccccccCCEEECC
Confidence 36778875 223789999999887 77776554443 7788888887742 2222111 1 3456666666666
Q ss_pred cCccccccCCCCCCCccEEEEccCCCceeecCCCCcccEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCC
Q 045938 122 RCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKP 201 (681)
Q Consensus 122 ~c~~l~~~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (681)
++ +++ .++ ...+..+++|++|++++|......
T Consensus 83 ~n-~l~-~~~-----------------~~~~~~l~~L~~L~Ls~n~l~~~~----------------------------- 114 (549)
T 2z81_A 83 DN-HLS-SLS-----------------SSWFGPLSSLKYLNLMGNPYQTLG----------------------------- 114 (549)
T ss_dssp TS-CCC-SCC-----------------HHHHTTCTTCCEEECTTCCCSSSC-----------------------------
T ss_pred CC-ccC-ccC-----------------HHHhccCCCCcEEECCCCcccccc-----------------------------
Confidence 64 222 111 013556777777777777532210
Q ss_pred CCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccC
Q 045938 202 RIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKL 281 (681)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l 281 (681)
....+..+++|++|+++++..+..++...+ ..+++|++|++++|...+..
T Consensus 115 ----------------------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 115 ----------------------VTSLFPNLTNLQTLRIGNVETFSEIRRIDF--------AGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp ----------------------SSCSCTTCTTCCEEEEEESSSCCEECTTTT--------TTCCEEEEEEEEETTCCEEC
T ss_pred ----------------------hhhhhhccCCccEEECCCCccccccCHhhh--------hcccccCeeeccCCcccccC
Confidence 011234556666666666544444433211 12366667777666665556
Q ss_pred CCCCCCCCCcceEEEeCCCCceeecCC--CCCCCceEEEEecCCCCCccc--cccccCCCCccceeeeccCCCccccccc
Q 045938 282 PQSPLSLSSLREIEIYGCSSLVSFPEV--ALPSKLKKIEIRECDALKSLP--EAWMCDTNSSLEILEIWICNSLTYIAGV 357 (681)
Q Consensus 282 ~~~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 357 (681)
|..++.+++|++|++++|. +..++.. ..+++|++|++++|. +...+ .......+++|+.|+++++ .+.+....
T Consensus 165 ~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~ 241 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFN 241 (549)
T ss_dssp TTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHH
T ss_pred hhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceecccc-ccchhHHH
Confidence 6667777777777777654 3332221 235677777777765 33221 1111134566777777664 22211100
Q ss_pred cCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcch-hhhhcccCCCCCCCcEEEEcCCCCchh
Q 045938 358 QLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPA-TLESLEVGNLPPSLKSLDVWSCSELES 436 (681)
Q Consensus 358 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~~~~~~p~~L~~L~l~~~~~~~~ 436 (681)
.... .....++|+++++++|.- ..+- .++. ... .+..++. ++.|++.++.....
T Consensus 242 ~l~~------------------~~~~~~~L~~l~l~~~~~-~~~~---~~~~~~~~--~~~~l~~-L~~L~l~~~~i~~~ 296 (549)
T 2z81_A 242 ELLK------------------LLRYILELSEVEFDDCTL-NGLG---DFNPSESD--VVSELGK-VETVTIRRLHIPQF 296 (549)
T ss_dssp HHHG------------------GGGGCTTCCEEEEESCEE-ECCS---CCCCCTTT--CCCCCTT-CCEEEEESCBCSCG
T ss_pred HHHH------------------Hhhhhccccccccccccc-cccc---cccccchh--hhhhhcc-cccccccccccchh
Confidence 0000 001122466666666531 1100 0000 000 0334444 99999998865432
Q ss_pred H-----HHhcccCCCccEEEeecccCcccccCcC-cCcccccEEeeccCCCceecC---CCCCCCCCcceEeeccccccc
Q 045938 437 I-----AERLDNNTSLETISISECENLKILPSGL-HNLRQLQEIGIWECENLVSFP---QGGLPCAKLTRLEISYCKRLQ 507 (681)
Q Consensus 437 ~-----~~~l~~l~~L~~L~ls~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~~~~l~ 507 (681)
. +......++|+.|++++|.+. .+|..+ +++++|++|++++|...+.++ ..+..+++|++|++++|....
T Consensus 297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 297 YLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp GGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred hhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence 1 112344678999999999875 456555 579999999999998665442 346778999999999998543
Q ss_pred ccc--ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCccc--c--cCCcccEEEEeccCCCCcCCCccccc
Q 045938 508 VLP--KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKI--W--KFSSLRQLTISGCDDDMVSFPPEDIR 581 (681)
Q Consensus 508 ~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~--~l~~L~~L~l~~~~~~~~~l~~~~~~ 581 (681)
..+ ..+..+++|++|++++|... .+|..++.+++|++|++++|..- . -.++|++|++++| .+..++.
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N--~l~~~~~---- 448 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN--NLDSFSL---- 448 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSS--CCSCCCC----
T ss_pred cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCC--Chhhhcc----
Confidence 221 35788999999999999754 67888899999999999999861 1 2369999999998 5555542
Q ss_pred cccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCchh
Q 045938 582 LRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCPL 649 (681)
Q Consensus 582 ~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~ 649 (681)
.+++|++|+++++ +++.+|. ...+++|++|++++| .++.++.. ..+++|++|++++|+.
T Consensus 449 ------~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 449 ------FLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp ------CCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ------cCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 5679999999997 8889987 467999999999998 67776653 4579999999999873
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4e-29 Score=279.36 Aligned_cols=255 Identities=14% Similarity=0.146 Sum_probs=156.5
Q ss_pred cccccccccEEeecCCCCccc--cchhhHHHHHHhh--hhccCCccEEeeeCCcCcccCCC--CCCCCCCcceEEEeCCC
Q 045938 227 LLQDICSLKRLTITSCPKLQS--LVAEEEKDQQQQL--CQLSCILEYIDLRDCQDLVKLPQ--SPLSLSSLREIEIYGCS 300 (681)
Q Consensus 227 ~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~L~~~~ 300 (681)
.+..+++|++|+++++..++. +|... ..+ ...+++|++|++++|... .+|. .++.+++|++|++++|.
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-----~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDW-----QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHH-----HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHH-----HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence 457788888888888753553 44432 111 123478999999988874 8888 78889999999998876
Q ss_pred CceeecCCCCCCCceEEEEecCCCCCccccccccCCCCc-cceeeeccCCCccccccccCCCCceeEEEecccccccccc
Q 045938 301 SLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSS-LEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSS 379 (681)
Q Consensus 301 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 379 (681)
....+|....+++|++|++++|. +..+|..+ ..+++ |+.|+++++. ++.++..-.
T Consensus 342 l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l--~~l~~~L~~L~Ls~N~-l~~lp~~~~-------------------- 397 (636)
T 4eco_A 342 LEGKLPAFGSEIKLASLNLAYNQ-ITEIPANF--CGFTEQVENLSFAHNK-LKYIPNIFD-------------------- 397 (636)
T ss_dssp CEEECCCCEEEEEESEEECCSSE-EEECCTTS--EEECTTCCEEECCSSC-CSSCCSCCC--------------------
T ss_pred CccchhhhCCCCCCCEEECCCCc-cccccHhh--hhhcccCcEEEccCCc-Ccccchhhh--------------------
Confidence 33377755567888888888876 55666654 56677 8888887742 333321100
Q ss_pred cccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcc-------cCCCccEEEe
Q 045938 380 RRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLD-------NNTSLETISI 452 (681)
Q Consensus 380 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l 452 (681)
...++ +|++|++++|.+.+..|..+. .+++|++|++
T Consensus 398 ------------------------------------~~~l~-~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 398 ------------------------------------AKSVS-VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp ------------------------------------TTCSS-CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred ------------------------------------hcccC-ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 00111 266666666655555555455 5566666666
Q ss_pred ecccCcccccCcCcCcccccEEeeccCCCceecCCCCCC--------CCCcceEeeccccccccccccCc--ccCCccee
Q 045938 453 SECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLP--------CAKLTRLEISYCKRLQVLPKGLH--NLTSLQQL 522 (681)
Q Consensus 453 s~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~--------~~~L~~L~l~~~~~l~~~~~~l~--~l~~L~~L 522 (681)
++|.+....+..+..+++|++|++++|... .+|..... +++|++|++++|... .+|..+. .+++|+.|
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI 518 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE
Confidence 666665322222344666666666666533 55543332 126777777776643 5666555 66777777
Q ss_pred eecccCCCCCccccCCCCCCCceeeeecC
Q 045938 523 TIGEGGELPSLEEDDGLPTNLHRLEIIDN 551 (681)
Q Consensus 523 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 551 (681)
++++|...+ +|..++.+++|++|++++|
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 777776554 5555555565666655443
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=8.8e-28 Score=263.32 Aligned_cols=211 Identities=15% Similarity=0.143 Sum_probs=164.4
Q ss_pred CCcEEEEcCCCCchhHHHhc-----ccCCCccEEEeecccCccccc-CcCcCc---ccccEEeeccCCCceecCCCCCCC
Q 045938 422 SLKSLDVWSCSELESIAERL-----DNNTSLETISISECENLKILP-SGLHNL---RQLQEIGIWECENLVSFPQGGLPC 492 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~ls~~~~~~~~~-~~l~~l---~~L~~L~l~~~~~l~~l~~~~~~~ 492 (681)
+|++|++++|...+.+|..+ +++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|... .++. ...+
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~l 323 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC-PSKI 323 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC-CSSC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-cccc-hhhC
Confidence 48888888876665666666 7778888888887776 334 233333 56888888887633 2221 2567
Q ss_pred CCcceEeeccccccccccccCcccCCcceeeecccCCCC--CccccCCCCCCCceeeeecCccc--------ccCCcccE
Q 045938 493 AKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELP--SLEEDDGLPTNLHRLEIIDNKKI--------WKFSSLRQ 562 (681)
Q Consensus 493 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~--------~~l~~L~~ 562 (681)
++|++|++++|......|..++.+++|++|++++|...+ .+|..++.+++|++|++++|... ..+++|++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 899999999999877788889999999999999998765 55667889999999999999872 35789999
Q ss_pred EEEeccCCCCc-CCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC--CCcccc
Q 045938 563 LTISGCDDDMV-SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSL 639 (681)
Q Consensus 563 L~l~~~~~~~~-~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L 639 (681)
|++++| .+. .++. ..+++|+.|+++++ ++..+|..+..+++|++|++++| .++.+|.. ..+++|
T Consensus 404 L~Ls~N--~l~~~~~~---------~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 470 (520)
T 2z7x_B 404 LNMSSN--ILTDTIFR---------CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSL 470 (520)
T ss_dssp EECCSS--CCCGGGGG---------SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred EECcCC--CCCcchhh---------hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcc
Confidence 999997 332 2222 13379999999997 88899998889999999999998 78888874 347899
Q ss_pred cEEEeCCchh
Q 045938 640 LQLYIGGCPL 649 (681)
Q Consensus 640 ~~L~i~~c~~ 649 (681)
++|++++||.
T Consensus 471 ~~L~l~~N~~ 480 (520)
T 2z7x_B 471 QKIWLHTNPW 480 (520)
T ss_dssp CEEECCSSCB
T ss_pred cEEECcCCCC
Confidence 9999999874
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=5.2e-27 Score=257.22 Aligned_cols=452 Identities=14% Similarity=0.044 Sum_probs=271.9
Q ss_pred cceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCCC--CCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938 9 EQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL 86 (681)
Q Consensus 9 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (681)
+++++++++...+|..+. ++|++|++++| .++.+++ ++.+++|++|+++++. +..+.+..++. +++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~----~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-----l~~L 71 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS----QKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFKF-----NQEL 71 (520)
T ss_dssp CEEECTTSCCSSCCCSCC----TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTT-----CTTC
T ss_pred ceEecCCCCccccccccc----ccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhhc-----ccCC
Confidence 578899999888887653 78999999997 5777763 8999999999999997 88876655554 8999
Q ss_pred ceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCC---CCCCCccEEEEccCCCceeecCCCCcc--cEE
Q 045938 87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEGCEELLVSVSSLPSL--CKF 161 (681)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~i~~~~~~~~~~~~l~~L--~~L 161 (681)
++|++++. .+..+.. . .+++|++|+++++.-....+| ..+++|++|+++++......+..+++| ++|
T Consensus 72 ~~L~Ls~N-~l~~lp~------~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 72 EYLDLSHN-KLVKISC------H-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143 (520)
T ss_dssp CEEECCSS-CCCEEEC------C-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEE
T ss_pred CEEecCCC-ceeecCc------c-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEE
Confidence 99999885 3333322 2 589999999998643221344 357899999999887554566677777 999
Q ss_pred EECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcc--eE--eecccCCceeeeecccccccccccccEE
Q 045938 162 IIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE--EL--EINDMKEQTYIWKSHNELLQDICSLKRL 237 (681)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~L--~l~~~~~~~~~~~~~~~~~~~~~~L~~L 237 (681)
++++|.... .+..|..+.+++ .+ .+.++.... ..+...+..+++|+.|
T Consensus 144 ~l~~n~l~~-------------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~---~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 144 LLVLGETYG-------------------------EKEDPEGLQDFNTESLHIVFPTNKEFH---FILDVSVKTVANLELS 195 (520)
T ss_dssp EEEECTTTT-------------------------SSCCTTTTTTCCEEEEEEECCSSSCCC---CCCCCCCTTCSEEEEC
T ss_pred Eeecccccc-------------------------cccccccccccccceEEEEeccCcchh---hhhhhhhhcccceeec
Confidence 999886410 011122233332 12 222211111 1223334455666666
Q ss_pred eecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCC---CCCCCcceEEEeCCCCceeecCC------
Q 045938 238 TITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSP---LSLSSLREIEIYGCSSLVSFPEV------ 308 (681)
Q Consensus 238 ~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~---~~l~~L~~L~L~~~~~l~~~~~~------ 308 (681)
+++++........ ....+.. ...+++|++|++++|......+..+ ...++|++|++++|.....+|..
T Consensus 196 ~l~~n~~~~~~~~--~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 272 (520)
T 2z7x_B 196 NIKCVLEDNKCSY--FLSILAK-LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272 (520)
T ss_dssp CEEECCSTTTTHH--HHHHHHG-GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCS
T ss_pred cccccccccccce--eecchhh-hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccc
Confidence 6665431100000 0011111 1233556666655554322111000 01235666666555421133322
Q ss_pred CCCCCceEEEEecCCCCCccccccccC--CCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCC
Q 045938 309 ALPSKLKKIEIRECDALKSLPEAWMCD--TNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSL 386 (681)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 386 (681)
..+++|+.+++++|.. .+|...+.. ...+|+.|+++++. +...+. +. ..++
T Consensus 273 ~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~---------------------~l~~ 325 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC---PS---------------------KISP 325 (520)
T ss_dssp CCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC---CS---------------------SCCC
T ss_pred ccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cccccc---hh---------------------hCCc
Confidence 3355566666666553 344211100 11446666666542 211110 00 1124
Q ss_pred cceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCch--hHHHhcccCCCccEEEeecccCcccccC-
Q 045938 387 LEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELE--SIAERLDNNTSLETISISECENLKILPS- 463 (681)
Q Consensus 387 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~~~- 463 (681)
|++|+++++. ++... +. .+..++. |++|++++|...+ .+|..+..+++|++|++++|.+.+.+|.
T Consensus 326 L~~L~Ls~n~-l~~~~-----~~-----~~~~l~~-L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 326 FLHLDFSNNL-LTDTV-----FE-----NCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCEEECCSSC-CCTTT-----TT-----TCCCCSS-CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred ccEEEeECCc-cChhh-----hh-----hhccCCC-CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 6666666542 22100 11 1445555 9999999987765 5667788999999999999988874454
Q ss_pred cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCcccc-CCCCCC
Q 045938 464 GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEED-DGLPTN 542 (681)
Q Consensus 464 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~ 542 (681)
.+..+++|++|++++|...+.++..+. ++|++|++++|.. ..+|..+..+++|++|++++|... .+|.. +..+++
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 469 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS 469 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc-cccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence 477789999999999886555555443 6899999999874 478887788999999999998755 55554 666777
Q ss_pred CceeeeecCcc
Q 045938 543 LHRLEIIDNKK 553 (681)
Q Consensus 543 L~~L~l~~~~~ 553 (681)
|++|++++|+.
T Consensus 470 L~~L~l~~N~~ 480 (520)
T 2z7x_B 470 LQKIWLHTNPW 480 (520)
T ss_dssp CCEEECCSSCB
T ss_pred ccEEECcCCCC
Confidence 77777776664
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.2e-28 Score=275.54 Aligned_cols=336 Identities=16% Similarity=0.156 Sum_probs=200.7
Q ss_pred cCCccEEeeeCCcCccc-----------------CCCCCC--CCCCcceEEEeCCCCceeec-CCCCCCCceEEEEecCC
Q 045938 264 SCILEYIDLRDCQDLVK-----------------LPQSPL--SLSSLREIEIYGCSSLVSFP-EVALPSKLKKIEIRECD 323 (681)
Q Consensus 264 ~~~L~~L~l~~~~~~~~-----------------l~~~~~--~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~ 323 (681)
+++|++|++++|...+. +|..++ ++++|++|++++|.....+| ....+++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 36677777776665332 666666 67777777777666555554 23446677777777665
Q ss_pred CCC--cccccccc----CCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCC
Q 045938 324 ALK--SLPEAWMC----DTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPS 397 (681)
Q Consensus 324 ~l~--~~~~~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 397 (681)
.+. .+|..+.. ..+++|+.|++++| .++.++..... ...++|++|+++++.
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l---------------------~~l~~L~~L~L~~N~- 341 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSL---------------------QKMKKLGMLECLYNQ- 341 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHH---------------------TTCTTCCEEECCSCC-
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhh---------------------ccCCCCCEEeCcCCc-
Confidence 333 35544310 12266777777664 33343320000 011235666655532
Q ss_pred cc-cccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCC-ccEEEeecccCcccccCcCcCcc--cccE
Q 045938 398 LT-CIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTS-LETISISECENLKILPSGLHNLR--QLQE 473 (681)
Q Consensus 398 l~-~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~ls~~~~~~~~~~~l~~l~--~L~~ 473 (681)
++ . ++ .++.++. |++|++++|... .+|..+..+++ |++|++++|.+. .+|..+...+ +|+.
T Consensus 342 l~g~-ip-----------~~~~l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 342 LEGK-LP-----------AFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp CEEE-CC-----------CCEEEEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred Cccc-hh-----------hhCCCCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 22 1 11 0233333 777777776544 55666777777 777777777766 5566555433 6777
Q ss_pred EeeccCCCceecCCCCC-------CCCCcceEeeccccccccccccC-cccCCcceeeecccCCCCCccccCCC------
Q 045938 474 IGIWECENLVSFPQGGL-------PCAKLTRLEISYCKRLQVLPKGL-HNLTSLQQLTIGEGGELPSLEEDDGL------ 539 (681)
Q Consensus 474 L~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~------ 539 (681)
|++++|...+.+|..+. .+++|++|++++|... .+|..+ ..+++|++|++++|... .+|.....
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENF 484 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEEC
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccc
Confidence 77777765544444444 5567777777777643 455433 34677777777777654 44432221
Q ss_pred --CCCCceeeeecCcc------cc--cCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecc------cCCc
Q 045938 540 --PTNLHRLEIIDNKK------IW--KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGN------FPNL 603 (681)
Q Consensus 540 --~~~L~~L~l~~~~~------~~--~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~------~~~l 603 (681)
+++|++|++++|.+ +. .+++|++|++++| .+..+|... ..+++|+.|++++ +.-.
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN--SFSKFPTQP-------LNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCSSCCEEECCSCBCTTCCBCC
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC--CCCCcChhh-------hcCCCCCEEECCCCcccccCccc
Confidence 12677777777765 33 6777777777776 555566655 3567778887743 3334
Q ss_pred ccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhH
Q 045938 604 ERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI 650 (681)
Q Consensus 604 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 650 (681)
..+|..+..+++|++|++++| .++.+|.. +.++|++|++++|+..
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCTTC
T ss_pred ccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCCCc
Confidence 567778888888888888887 45778765 3378888888888644
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=4.3e-27 Score=267.21 Aligned_cols=287 Identities=14% Similarity=0.124 Sum_probs=179.5
Q ss_pred ccccccccccEEeecCCCCccc--cchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCC--CCCCCCCcceEEEeCCCC
Q 045938 226 ELLQDICSLKRLTITSCPKLQS--LVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQ--SPLSLSSLREIEIYGCSS 301 (681)
Q Consensus 226 ~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~L~~~~~ 301 (681)
..+..+++|+.|+++++..++. +|.... .+......+++|++|++++|... .+|. .++++++|+.|++++|.
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~--~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~- 584 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADWT--RLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK- 584 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHHH--HHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHHH--hhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-
Confidence 4467889999999998853553 444321 11101134468999999998885 8888 88899999999999876
Q ss_pred ceeecCCCCCCCceEEEEecCCCCCccccccccCCCCc-cceeeeccCCCccccccccCCCCceeEEEeccccccccccc
Q 045938 302 LVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSS-LEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSR 380 (681)
Q Consensus 302 l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 380 (681)
+..+|....+++|++|++++|. +..+|..+ ..+++ |+.|++++|. ++.++..-.
T Consensus 585 l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l--~~l~~~L~~L~Ls~N~-L~~lp~~~~--------------------- 639 (876)
T 4ecn_A 585 VRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDF--CAFTDQVEGLGFSHNK-LKYIPNIFN--------------------- 639 (876)
T ss_dssp CCBCCCCCTTSEESEEECCSSC-CSCCCTTS--CEECTTCCEEECCSSC-CCSCCSCCC---------------------
T ss_pred cccchhhcCCCcceEEECcCCc-cccchHHH--hhccccCCEEECcCCC-CCcCchhhh---------------------
Confidence 5688877778999999999987 55777665 67777 9999998853 544442110
Q ss_pred ccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHh-cccCCCccEEEeecccCcc
Q 045938 381 RYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAER-LDNNTSLETISISECENLK 459 (681)
Q Consensus 381 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~ls~~~~~~ 459 (681)
....++|++|+++++. +....+ .++.... ....+ +|+.|++++|.+. .+|.. +..+++|+.|++++|.+.
T Consensus 640 ~~~~~~L~~L~Ls~N~-l~g~ip--~l~~~l~---~~~~~-~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNK-IGSEGR--NISCSMD---DYKGI-NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp TTCSSCEEEEECCSSC-TTTTSS--SCSSCTT---TCCCC-CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred ccccCCCCEEECcCCc-CCCccc--cchhhhc---cccCC-CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence 0111236777776643 211000 0000000 01122 3788888887655 44443 346778888888887766
Q ss_pred cccCcCc--------CcccccEEeeccCCCceecCCCCC--CCCCcceEeeccccccccccccCcccCCcceeeecc---
Q 045938 460 ILPSGLH--------NLRQLQEIGIWECENLVSFPQGGL--PCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE--- 526 (681)
Q Consensus 460 ~~~~~l~--------~l~~L~~L~l~~~~~l~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~--- 526 (681)
.+|..+. ++++|+.|++++|. +..+|..+. .+++|+.|++++|.... +|..++.+++|+.|++++
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC
T ss_pred ccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCC
Confidence 3444332 22377777777775 336666555 67777777777776443 677777777777777765
Q ss_pred ---cCCCCCccccCCCCCCCceeeeecCc
Q 045938 527 ---GGELPSLEEDDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 527 ---~~~~~~~~~~~~~~~~L~~L~l~~~~ 552 (681)
|...+.+|..++.+++|++|++++|.
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cccccccccChHHHhcCCCCCEEECCCCC
Confidence 44445555555555555555555544
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3e-26 Score=260.29 Aligned_cols=336 Identities=15% Similarity=0.136 Sum_probs=247.0
Q ss_pred CCCCCCCCCCcceEEEeCCCCcee------------------ecCC-C--CCCCceEEEEecCCCCCccccccccCCCCc
Q 045938 281 LPQSPLSLSSLREIEIYGCSSLVS------------------FPEV-A--LPSKLKKIEIRECDALKSLPEAWMCDTNSS 339 (681)
Q Consensus 281 l~~~~~~l~~L~~L~L~~~~~l~~------------------~~~~-~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 339 (681)
+|..++++++|++|++++|. +.. +|.. + .+++|++|++++|.....+|..+ ..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG--GGCSS
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH--hCCCC
Confidence 67777778888888888776 444 5532 3 47778888888877667777655 67778
Q ss_pred cceeeeccCCCccc--cccc--------cCCCCceeEEEeccccccccccc---ccCCCCcceeeeccCCCcccccccCC
Q 045938 340 LEILEIWICNSLTY--IAGV--------QLPPSLKWTLTVEEGIQSSSSSR---RYTSSLLEGLHISRCPSLTCIFSKNE 406 (681)
Q Consensus 340 L~~L~l~~c~~l~~--~~~~--------~~~~~l~~~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~ 406 (681)
|+.|+++++..++. +|.. ...++++ .+.+.++... .++. ....++|++|+++++. ++. ++
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~-lp--- 589 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRH-LE--- 589 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCB-CC---
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-ccc-ch---
Confidence 88888877653443 3321 1224666 7777666544 4443 3456689999998854 333 21
Q ss_pred cchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCC-ccEEEeecccCcccccCcCcCcc--cccEEeeccCCCce
Q 045938 407 LPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTS-LETISISECENLKILPSGLHNLR--QLQEIGIWECENLV 483 (681)
Q Consensus 407 ~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~ls~~~~~~~~~~~l~~l~--~L~~L~l~~~~~l~ 483 (681)
.++.++. |+.|++++|... .+|..+..+++ |++|++++|.+. .+|..+..++ +|+.|++++|...+
T Consensus 590 --------~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 590 --------AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp --------CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred --------hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence 1556666 999999999766 77888999999 999999999887 6777776654 49999999988654
Q ss_pred ecCC---CC--CCCCCcceEeeccccccccccccCc-ccCCcceeeecccCCCCCccccCCC--------CCCCceeeee
Q 045938 484 SFPQ---GG--LPCAKLTRLEISYCKRLQVLPKGLH-NLTSLQQLTIGEGGELPSLEEDDGL--------PTNLHRLEII 549 (681)
Q Consensus 484 ~l~~---~~--~~~~~L~~L~l~~~~~l~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~ 549 (681)
.+|. .. ..+++|+.|++++|... .+|..+. .+++|+.|++++|... .+|..+.. +++|++|+++
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred ccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECC
Confidence 4332 12 24468999999999855 6776554 7899999999999755 56554332 2389999999
Q ss_pred cCcc------cc--cCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecc------cCCcccccccccCCCC
Q 045938 550 DNKK------IW--KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGN------FPNLERLSSSIVDLQN 615 (681)
Q Consensus 550 ~~~~------~~--~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~------~~~l~~l~~~~~~~~~ 615 (681)
+|++ +. .+++|+.|+|++| .+..+|... ..+++|+.|++++ +.-...+|..+..+++
T Consensus 737 ~N~L~~lp~~l~~~~l~~L~~L~Ls~N--~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 737 FNKLTSLSDDFRATTLPYLSNMDVSYN--CFSSFPTQP-------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp SSCCCCCCGGGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CCCCccchHHhhhccCCCcCEEEeCCC--CCCccchhh-------hcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 9987 44 7899999999998 666788766 4778999999976 3334577889999999
Q ss_pred CCEEeecCCCCCcccCCCCCcccccEEEeCCchhH
Q 045938 616 LTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI 650 (681)
Q Consensus 616 L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 650 (681)
|+.|++++| .+..+|.. +.++|+.|++++|+..
T Consensus 808 L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 808 LIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPNI 840 (876)
T ss_dssp CCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTTC
T ss_pred CCEEECCCC-CCCccCHh-hcCCCCEEECCCCCCC
Confidence 999999998 55889886 4479999999999854
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=4.2e-25 Score=248.51 Aligned_cols=505 Identities=15% Similarity=0.106 Sum_probs=290.4
Q ss_pred CCCCCCC-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCCcceEeec
Q 045938 43 MCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHIL 121 (681)
Q Consensus 43 ~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 121 (681)
+++.+|+ + -+++++|+++++. ++.++...+.+ +++|++|+++++ .+...... . +..+++|++|+++
T Consensus 42 ~l~~vP~~l--p~~~~~LdLs~N~-i~~l~~~~f~~-----l~~L~~L~Ls~N-~i~~i~~~-~---f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 42 NFYKIPDNL--PFSTKNLDLSFNP-LRHLGSYSFFS-----FPELQVLDLSRC-EIQTIEDG-A---YQSLSHLSTLILT 108 (635)
T ss_dssp CCSSCCSSS--CTTCCEEECTTSC-CCEECTTTTTT-----CTTCCEEECTTC-CCCEECTT-T---TTTCTTCCEEECT
T ss_pred CcCccCCCC--CcCCCEEEeeCCC-CCCCCHHHHhC-----CCCCCEEECCCC-cCCCcChh-H---hcCCCCCCEEEcc
Confidence 3555653 2 1366777776665 66666554444 667777777664 22222211 1 3556777777777
Q ss_pred cCccccccCC----CCCCCccEEEEccCCCce---eecCCCCcccEEEECCCCCceeeccccccCCCCcceeecCCCccc
Q 045938 122 RCSKLKGTFP----EHLPALEMLVIEGCEELL---VSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVF 194 (681)
Q Consensus 122 ~c~~l~~~~~----~~l~~L~~L~i~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (681)
++ +++ .+| .++++|++|++++|.... ..++.+++|++|++++|.....
T Consensus 109 ~N-~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~----------------------- 163 (635)
T 4g8a_A 109 GN-PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------- 163 (635)
T ss_dssp TC-CCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------
T ss_pred CC-cCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC-----------------------
Confidence 64 333 222 223444444444432110 1234445555555555432111
Q ss_pred ccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeC
Q 045938 195 LAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRD 274 (681)
Q Consensus 195 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~ 274 (681)
.....+..+++|++|+++++ .++.++... +..+.........++++.
T Consensus 164 ----------------------------~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~----l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 164 ----------------------------KLPEYFSNLTNLEHLDLSSN-KIQSIYCTD----LRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp ----------------------------CCCGGGGGCTTCCEEECCSS-CCCEECGGG----GHHHHTCTTCCCEEECTT
T ss_pred ----------------------------CCchhhccchhhhhhcccCc-ccccccccc----ccchhhhhhhhhhhhccc
Confidence 11234466777777777776 555554433 222323334455677776
Q ss_pred CcCcccCCCCCCCCCCcceEEEeCCCCceeec--CCCCCCCceEEEEecCC--CCCccccccc--cCCCCccceeeeccC
Q 045938 275 CQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP--EVALPSKLKKIEIRECD--ALKSLPEAWM--CDTNSSLEILEIWIC 348 (681)
Q Consensus 275 ~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~--~l~~~~~~~~--~~~~~~L~~L~l~~c 348 (681)
+.. ..++........++.+++.++.....+. ....+..++...+.... ....+..... ......+....+...
T Consensus 211 n~l-~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CCC-CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred Ccc-cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 655 4444444455566777777654221111 11123444444443221 1111111000 012223333332221
Q ss_pred CCcc---ccc-cccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCc
Q 045938 349 NSLT---YIA-GVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLK 424 (681)
Q Consensus 349 ~~l~---~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~ 424 (681)
..-. ... .......+. .+...+.... .+........++.|++.++. +.. +. ...++. ++
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~-~~------------~~~l~~-L~ 352 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVS-SFSLVSVTIE-RVKDFSYNFGWQHLELVNCK-FGQ-FP------------TLKLKS-LK 352 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCS-EEEEESCEEE-ECGGGGSCCCCSEEEEESCE-ESS-CC------------CCBCTT-CC
T ss_pred hhcccccchhhhhhhhcccc-cccccccccc-cccccccchhhhhhhccccc-ccC-cC------------cccchh-hh
Confidence 1000 000 001112222 3333222211 11112223357777777743 111 01 122333 88
Q ss_pred EEEEcCCCCchhHHHhcccCCCccEEEeecccCccc--ccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 425 SLDVWSCSELESIAERLDNNTSLETISISECENLKI--LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
.+++..+..... .....+++|+.++++.|..... .+.....+.+|+.+++..+. ...++..+..+++|+.+++..
T Consensus 353 ~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 353 RLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp EEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTT
T ss_pred hcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhh
Confidence 888888765432 2456789999999999887543 34445567889999998876 445666677889999999998
Q ss_pred ccccccccc-cCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEeccCCCCc
Q 045938 503 CKRLQVLPK-GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISGCDDDMV 573 (681)
Q Consensus 503 ~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~~~~~~~ 573 (681)
+......+. .+..+++++.++++.|......+..+..+++|++|++++|.. +..+++|++|++++| .+.
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N--~L~ 507 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QLE 507 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CCC
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC--ccC
Confidence 876655443 567789999999999987777777788899999999999864 447889999999997 677
Q ss_pred CCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCCC---CcccccEEEeCCchh
Q 045938 574 SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKG---LPSSLLQLYIGGCPL 649 (681)
Q Consensus 574 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~~ 649 (681)
.++...+ ..+++|+.|+++++ ++..++. .+..+++|++|++++| ++..++... ++++|++|++++||.
T Consensus 508 ~l~~~~f------~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 508 QLSPTAF------NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp EECTTTT------TTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CcChHHH------cCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 7655443 56789999999996 7888865 6788999999999998 676665532 347899999998764
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.3e-25 Score=252.77 Aligned_cols=505 Identities=16% Similarity=0.109 Sum_probs=230.9
Q ss_pred CCcCCCcccccccccceeEEEEeecCCCCCCCC--CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeecccc
Q 045938 17 GGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDM 94 (681)
Q Consensus 17 ~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~ 94 (681)
+....|..+. .++++|+|++ +.++.+|+ |+.+++|++|++++|. ++.++.+.+++ +++|++|++++.
T Consensus 42 ~l~~vP~~lp----~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~-----L~~L~~L~Ls~N 110 (635)
T 4g8a_A 42 NFYKIPDNLP----FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQS-----LSHLSTLILTGN 110 (635)
T ss_dssp CCSSCCSSSC----TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT-----CTTCCEEECTTC
T ss_pred CcCccCCCCC----cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcC-----CCCCCEEEccCC
Confidence 4455665432 2567777776 35666663 6677777777777665 66666655544 667777777664
Q ss_pred CCcccccccCCCccccccCCcceEeeccCccccccCC----CCCCCccEEEEccCCCc----eeecCCCCcccEEEECCC
Q 045938 95 QGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFP----EHLPALEMLVIEGCEEL----LVSVSSLPSLCKFIIGGC 166 (681)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~l~~L~~L~i~~~~~~----~~~~~~l~~L~~L~l~~~ 166 (681)
.+....... +..+++|++|+++++ +++ .++ ..+++|++|+++++... ...+..+++|++|+++++
T Consensus 111 -~l~~l~~~~----f~~L~~L~~L~Ls~N-~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 111 -PIQSLALGA----FSGLSSLQKLVAVET-NLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp -CCCEECGGG----GTTCTTCCEEECTTS-CCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred -cCCCCCHHH----hcCCCCCCEEECCCC-cCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 233322111 345667777777664 333 222 34567777777765421 123455677777777776
Q ss_pred CCceeecc-ccccCC-CCcceeecCCCcccccCCCCCCC--CCcceEeecccCCceeeeecccccccccccccEEeecCC
Q 045938 167 KKIVWESA-TGHLGS-QNSVVCRDTSNQVFLAGPLKPRI--PKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSC 242 (681)
Q Consensus 167 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 242 (681)
........ ...... .......+.+... +...-+..+ ..++.+.+.+.... .......+..+..++...+...
T Consensus 184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~~~---~~~~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDS---LNVMKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSS---HHHHHHHHHTTTTCEEEEEEEE
T ss_pred cccccccccccchhhhhhhhhhhhcccCc-ccccCcccccchhhhhhhhhccccc---ccccchhhcCCccccccccccc
Confidence 54433211 000000 0000000000000 000000011 11222222221110 0011222233344433332211
Q ss_pred --C---CccccchhhHHHHHHhhhhccCCccEEeeeCCcC---cccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCc
Q 045938 243 --P---KLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQD---LVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKL 314 (681)
Q Consensus 243 --~---~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~---~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L 314 (681)
. .+....... + .....+....+..+.. ....+..+..+.+++.+++.++. +..+.......+|
T Consensus 260 ~~~~~~~l~~~~~~~----~----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~L 330 (635)
T 4g8a_A 260 EFRNEGNLEKFDKSA----L----EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGW 330 (635)
T ss_dssp CCTTSCCCSCCCTTT----T----GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGGGSCCCC
T ss_pred ccccccccccccccc----c----ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccccccccchhh
Confidence 0 111100000 0 0112233333322211 11223334445556666665543 4444444445566
Q ss_pred eEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeecc
Q 045938 315 KKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISR 394 (681)
Q Consensus 315 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 394 (681)
+.|++.+|. +..++. ..+..|+.+.+..+.. ...+. ....++|+.+++++
T Consensus 331 ~~L~l~~~~-~~~~~~----~~l~~L~~l~l~~n~~-~~~~~------------------------~~~l~~L~~L~ls~ 380 (635)
T 4g8a_A 331 QHLELVNCK-FGQFPT----LKLKSLKRLTFTSNKG-GNAFS------------------------EVDLPSLEFLDLSR 380 (635)
T ss_dssp SEEEEESCE-ESSCCC----CBCTTCCEEEEESCCS-CCBCC------------------------CCBCTTCCEEECCS
T ss_pred hhhhccccc-ccCcCc----ccchhhhhcccccccC-CCCcc------------------------cccccccccchhhc
Confidence 666666554 222222 2334555555544221 11111 11123455555554
Q ss_pred CCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccccc-CcCcCcccccE
Q 045938 395 CPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP-SGLHNLRQLQE 473 (681)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~ 473 (681)
.. +..... .+.. ....+. ++.+++..+.... .+..+..+++|+.+++..+......+ ..+..+++++.
T Consensus 381 n~-l~~~~~---~~~~-----~~~~~~-L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 381 NG-LSFKGC---CSQS-----DFGTIS-LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp SC-CBEEEE---CCHH-----HHSCSC-CCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred cc-cccccc---cccc-----hhhhhh-hhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccc
Confidence 22 111000 0000 112222 6666666554322 23445566666666666655544322 33455666666
Q ss_pred EeeccCCCceecCCCCCCCCCcceEeeccccccc-cccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938 474 IGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQ-VLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 474 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 552 (681)
++++.|......+..+..+++|+.|++++|.... ..|..+..+++|++|++++|...+..|..++.+++|++|+|++|+
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 6666665444444445555666666666665433 244556666666666666666555555556666666666666665
Q ss_pred c-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEeccc
Q 045938 553 K-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNF 600 (681)
Q Consensus 553 ~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~ 600 (681)
+ +.++++|++|++++| .+..++.+.+ ...+++|+.|+++++
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l-----~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLN--HIMTSKKQEL-----QHFPSSLAFLNLTQN 577 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTS--CCCBCCSSCT-----TCCCTTCCEEECTTC
T ss_pred CCCCChhHHhCCCCCCEEECCCC--cCCCCCHHHH-----HhhhCcCCEEEeeCC
Confidence 4 335666777777665 4555544332 012356777777654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=5.9e-25 Score=242.93 Aligned_cols=451 Identities=14% Similarity=0.071 Sum_probs=268.8
Q ss_pred cccceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCC--CCCCCCCcceeeecCCccceeeCccccCCCCCccCC
Q 045938 7 NLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFP 84 (681)
Q Consensus 7 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 84 (681)
..+++++++++...+|..+ .++|++|+++++ .++.++ .++.+++|++|+++++. ++.++.+.++. ++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-----l~ 100 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL----PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLF-----NQ 100 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS----CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTT-----CT
T ss_pred CCcEEEcCCCCCccCCCCC----CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCC-----CC
Confidence 3478899988888888754 368999999986 577777 38999999999999886 88887665554 88
Q ss_pred CcceeeccccCCcccccccCCCccccccCCcceEeeccCccccc-cCC---CCCCCccEEEEccCCCceeecCCCCcc--
Q 045938 85 CLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKG-TFP---EHLPALEMLVIEGCEELLVSVSSLPSL-- 158 (681)
Q Consensus 85 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~---~~l~~L~~L~i~~~~~~~~~~~~l~~L-- 158 (681)
+|++|++++.. +..+.. . .+++|++|+++++. +++ ..| ..+++|++|+++++......+..+++|
T Consensus 101 ~L~~L~Ls~N~-l~~lp~------~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L 171 (562)
T 3a79_B 101 DLEYLDVSHNR-LQNISC------C-PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171 (562)
T ss_dssp TCCEEECTTSC-CCEECS------C-CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCE
T ss_pred CCCEEECCCCc-CCccCc------c-ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCchhhhhhcee
Confidence 99999998753 333322 1 58899999998864 432 222 356889999998875433345555556
Q ss_pred cEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcc--eEeecccCCceeeeecccccccccccccE
Q 045938 159 CKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE--ELEINDMKEQTYIWKSHNELLQDICSLKR 236 (681)
Q Consensus 159 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 236 (681)
++|+++++.... .+..+..++++. .+.+ +..............+..+++|+.
T Consensus 172 ~~L~L~~n~l~~-------------------------~~~~~~~l~~l~~~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 172 SCILLDLVSYHI-------------------------KGGETESLQIPNTTVLHL-VFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp EEEEEEESSCCC-------------------------CSSSCCEEEECCEEEEEE-EECSSSCCCCCCEEEESSEEEEEE
T ss_pred eEEEeecccccc-------------------------cccCcccccccCcceEEE-EecCccchhhhhhhcccccceEEE
Confidence 888888876410 001111222222 2322 111111111123334456778888
Q ss_pred EeecCCCC-ccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc----CCCCCCCCCCcceEEEeCCCCceeecCC---
Q 045938 237 LTITSCPK-LQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK----LPQSPLSLSSLREIEIYGCSSLVSFPEV--- 308 (681)
Q Consensus 237 L~l~~c~~-l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~l~~~~~~--- 308 (681)
++++++.. ...++ ..... ....++|+.++++++..... ++..+ ..++|++|++++|.....+|..
T Consensus 226 L~l~~n~~~~~~l~-----~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 226 SNIKLNDENCQRLM-----TFLSE-LTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp EEEECCSTTHHHHH-----HHHHH-HHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred ecccccccccchHH-----HHHHH-HhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhh
Confidence 88876531 11111 11111 12336677777766543221 12111 2347777777776522244432
Q ss_pred ---CCCCCceEEEEecCCCCCcccccccc--CCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccC
Q 045938 309 ---ALPSKLKKIEIRECDALKSLPEAWMC--DTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYT 383 (681)
Q Consensus 309 ---~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 383 (681)
..++.|+.+++..+.. .+|...+. ....+|+.|+++++. +..+.. +. .
T Consensus 299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~~---~~---------------------~ 351 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP-FIHMVC---PP---------------------S 351 (562)
T ss_dssp CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-CCCCCC---CS---------------------S
T ss_pred cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-cccccC---cc---------------------C
Confidence 2234444444444442 33322110 012457777777653 221110 01 1
Q ss_pred CCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCch--hHHHhcccCCCccEEEeecccCcccc
Q 045938 384 SSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELE--SIAERLDNNTSLETISISECENLKIL 461 (681)
Q Consensus 384 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~ 461 (681)
.++|++|+++++. ++... +. .+..++. |++|++++|...+ .++..+..+++|++|++++|.+.+.+
T Consensus 352 l~~L~~L~l~~n~-l~~~~-----~~-----~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 352 PSSFTFLNFTQNV-FTDSV-----FQ-----GCSTLKR-LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCCCEEECCSSC-CCTTT-----TT-----TCCSCSS-CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred CCCceEEECCCCc-cccch-----hh-----hhcccCC-CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 2246666666642 22200 11 1445555 8888888887654 45567788888888888888887744
Q ss_pred cC-cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCcccc-CCC
Q 045938 462 PS-GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEED-DGL 539 (681)
Q Consensus 462 ~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~ 539 (681)
|. .+..+++|++|++++|...+.++..+. ++|++|++++|. +..+|..+..+++|++|++++|... .+|.. ++.
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~ 495 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDR 495 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTT
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhc
Confidence 43 467788888888888875555554333 578888888886 4577777778888888888888755 45554 667
Q ss_pred CCCCceeeeecCcc
Q 045938 540 PTNLHRLEIIDNKK 553 (681)
Q Consensus 540 ~~~L~~L~l~~~~~ 553 (681)
+++|++|++++|+.
T Consensus 496 l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 496 LTSLQYIWLHDNPW 509 (562)
T ss_dssp CTTCCCEECCSCCB
T ss_pred CCCCCEEEecCCCc
Confidence 77777777777764
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.4e-26 Score=247.49 Aligned_cols=410 Identities=22% Similarity=0.209 Sum_probs=171.9
Q ss_pred ccceeEEEEeecCCCCCCCC-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCcc
Q 045938 30 FLKLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQG 108 (681)
Q Consensus 30 ~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 108 (681)
..+|++|.++++ .++.+|+ ++++++|++|+++++.....++..+ +. +.+|+.+++.+|.
T Consensus 10 ~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~-----l~~L~~l~l~~c~------------- 69 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GE-----QREMAVSRLRDCL------------- 69 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS-CC-----CHHHHHHHHHHHH-------------
T ss_pred cccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCccc-cc-----chhcchhhhhhhh-------------
Confidence 345666666554 3466663 6666666666666654222233221 11 3333333333321
Q ss_pred ccccCCcceEeeccCccccccCCCCCCCccEEEEccCCCceeecCCCCcccEEEECCCCCceeeccccccCCCCcceeec
Q 045938 109 VERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRD 188 (681)
Q Consensus 109 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (681)
..++++|++++|. ++ .+|...++|++|+++++.... .-..+++|++|+++++.......
T Consensus 70 ---~~~l~~L~l~~~~-l~-~lp~~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~--------------- 128 (454)
T 1jl5_A 70 ---DRQAHELELNNLG-LS-SLPELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSD--------------- 128 (454)
T ss_dssp ---HHTCSEEECTTSC-CS-CCCSCCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCS---------------
T ss_pred ---ccCCCEEEecCCc-cc-cCCCCcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccC---------------
Confidence 1344555555542 33 334434555555555443221 11123566666666654322111
Q ss_pred CCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCcc
Q 045938 189 TSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILE 268 (681)
Q Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~ 268 (681)
..++|++|.+.++.... .+ .+..+++|++|+++++ .++.+|.. +++|+
T Consensus 129 -------------~~~~L~~L~L~~n~l~~----lp--~~~~l~~L~~L~l~~N-~l~~lp~~------------~~~L~ 176 (454)
T 1jl5_A 129 -------------LPPLLEYLGVSNNQLEK----LP--ELQNSSFLKIIDVDNN-SLKKLPDL------------PPSLE 176 (454)
T ss_dssp -------------CCTTCCEEECCSSCCSS----CC--CCTTCTTCCEEECCSS-CCSCCCCC------------CTTCC
T ss_pred -------------CCCCCCEEECcCCCCCC----Cc--ccCCCCCCCEEECCCC-cCcccCCC------------ccccc
Confidence 12566777776654322 22 2577888888888887 56655433 25788
Q ss_pred EEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccC
Q 045938 269 YIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWIC 348 (681)
Q Consensus 269 ~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 348 (681)
+|++++|.. ..+| .++.+++|++|++++|. ++.++.. +++|++|++++|. +..+|. + ..+++|+.|+++++
T Consensus 177 ~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~--~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 177 FIAAGNNQL-EELP-ELQNLPFLTAIYADNNS-LKKLPDL--PLSLESIVAGNNI-LEELPE-L--QNLPFLTTIYADNN 247 (454)
T ss_dssp EEECCSSCC-SSCC-CCTTCTTCCEEECCSSC-CSSCCCC--CTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSS
T ss_pred EEECcCCcC-CcCc-cccCCCCCCEEECCCCc-CCcCCCC--cCcccEEECcCCc-CCcccc-c--CCCCCCCEEECCCC
Confidence 999988876 5566 58888899999998875 5555543 4688999998886 667774 3 67888999998874
Q ss_pred CCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEE
Q 045938 349 NSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDV 428 (681)
Q Consensus 349 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l 428 (681)
.++.++. .+++++ .+.+.++... .++.. .++|++|+++++. ++. +..+|++|++|++
T Consensus 248 -~l~~l~~--~~~~L~-~L~l~~N~l~-~l~~~--~~~L~~L~ls~N~-l~~---------------l~~~~~~L~~L~l 304 (454)
T 1jl5_A 248 -LLKTLPD--LPPSLE-ALNVRDNYLT-DLPEL--PQSLTFLDVSENI-FSG---------------LSELPPNLYYLNA 304 (454)
T ss_dssp -CCSSCCS--CCTTCC-EEECCSSCCS-CCCCC--CTTCCEEECCSSC-CSE---------------ESCCCTTCCEEEC
T ss_pred -cCCcccc--cccccC-EEECCCCccc-ccCcc--cCcCCEEECcCCc-cCc---------------ccCcCCcCCEEEC
Confidence 4555442 223333 3333333211 11111 1234444444421 221 1122233444444
Q ss_pred cCCCCchhHHHhcccC-CCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccc
Q 045938 429 WSCSELESIAERLDNN-TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQ 507 (681)
Q Consensus 429 ~~~~~~~~~~~~l~~l-~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~ 507 (681)
++|...+ +..+ ++|++|++++|.+.+ +|.. +++|++|++++|. +..+|. .+++|++|++++|....
T Consensus 305 ~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 305 SSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSS
T ss_pred cCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCc
Confidence 4443322 1112 244444444444433 2221 2444444444443 223333 23344444444444322
Q ss_pred --cccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccc--cCC-cccEEEEecc
Q 045938 508 --VLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIW--KFS-SLRQLTISGC 568 (681)
Q Consensus 508 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~l~-~L~~L~l~~~ 568 (681)
.+|.++..+ +.|...+.+|. .+++|++|++++|...+ .+| +++.|.+.+|
T Consensus 372 l~~ip~~l~~L--------~~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 372 FPDIPESVEDL--------RMNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPESVEDLRMNSE 426 (454)
T ss_dssp CCCCCTTCCEE--------ECCC-------------------------------------------
T ss_pred CCCChHHHHhh--------hhccccccccc---ccCcCCEEECCCCcCCccccchhhHhheeCcCc
Confidence 222222211 11222222222 13789999999888643 444 5788888875
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.8e-25 Score=239.42 Aligned_cols=342 Identities=17% Similarity=0.192 Sum_probs=204.8
Q ss_pred CCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCC
Q 045938 203 IPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLP 282 (681)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~ 282 (681)
+++++.|.+.++..... . .+..+++|++|++++| .++.++. + ..+++|++|++++|.. ..++
T Consensus 45 l~~l~~L~l~~~~i~~l-----~-~~~~l~~L~~L~Ls~n-~l~~~~~------~----~~l~~L~~L~l~~n~l-~~~~ 106 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-----D-GVEYLNNLTQINFSNN-QLTDITP------L----KNLTKLVDILMNNNQI-ADIT 106 (466)
T ss_dssp HHTCCEEECCSSCCCCC-----T-TGGGCTTCCEEECCSS-CCCCCGG------G----TTCTTCCEEECCSSCC-CCCG
T ss_pred hccccEEecCCCCCccC-----c-chhhhcCCCEEECCCC-ccCCchh------h----hccccCCEEECCCCcc-ccCh
Confidence 45666666665542211 1 1455666666666665 4444432 1 2336666666666655 3333
Q ss_pred CCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCC
Q 045938 283 QSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPS 362 (681)
Q Consensus 283 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 362 (681)
. +..+++|++|++++|. ++.++....+++|++|++++|. +..++.. ..+++|+.|++.+ .+..++
T Consensus 107 ~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L~l~~--~~~~~~------- 171 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDISAL---SGLTSLQQLSFGN--QVTDLK------- 171 (466)
T ss_dssp G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEE-ECCCGGG---TTCTTCSEEEEEE--SCCCCG-------
T ss_pred h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCc-cCCChhh---ccCCcccEeecCC--cccCch-------
Confidence 3 5666666666666653 5555545556666666666665 4444432 5566666666642 121111
Q ss_pred ceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcc
Q 045938 363 LKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLD 442 (681)
Q Consensus 363 l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~ 442 (681)
....+++|++|+++++. ++.+-. +..++. |++|++++|...+..+ ++
T Consensus 172 -----------------~~~~l~~L~~L~l~~n~-l~~~~~------------l~~l~~-L~~L~l~~n~l~~~~~--~~ 218 (466)
T 1o6v_A 172 -----------------PLANLTTLERLDISSNK-VSDISV------------LAKLTN-LESLIATNNQISDITP--LG 218 (466)
T ss_dssp -----------------GGTTCTTCCEEECCSSC-CCCCGG------------GGGCTT-CSEEECCSSCCCCCGG--GG
T ss_pred -----------------hhccCCCCCEEECcCCc-CCCChh------------hccCCC-CCEEEecCCccccccc--cc
Confidence 11223457777777753 333110 344444 8888888876655433 66
Q ss_pred cCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCccee
Q 045938 443 NNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQL 522 (681)
Q Consensus 443 ~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 522 (681)
.+++|++|++++|.+.+. ..+..+++|+.|++++|... .++. +..+++|++|++++|.... ++. +..+++|+.|
T Consensus 219 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L 292 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNL 292 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEE
T ss_pred ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc-cchh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeE
Confidence 778888888888776652 34667788888888877643 3332 5667788888888876443 333 6677888888
Q ss_pred eecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEe
Q 045938 523 TIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMI 597 (681)
Q Consensus 523 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l 597 (681)
++++|...+ +++ ++.+++|++|++++|.. +..+++|++|++++| .+..++. . ..+++|+.|++
T Consensus 293 ~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n--~l~~~~~-l-------~~l~~L~~L~l 360 (466)
T 1o6v_A 293 ELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN--KVSDVSS-L-------ANLTNINWLSA 360 (466)
T ss_dssp ECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS--CCCCCGG-G-------TTCTTCCEEEC
T ss_pred EcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC--ccCCchh-h-------ccCCCCCEEeC
Confidence 888876544 333 66777888888887766 346777788888776 4444432 1 35667777777
Q ss_pred cccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938 598 GNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP 631 (681)
Q Consensus 598 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 631 (681)
+++ .+..++. +..+++|+.|++++| .+..+|
T Consensus 361 ~~n-~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p 391 (466)
T 1o6v_A 361 GHN-QISDLTP-LANLTRITQLGLNDQ-AWTNAP 391 (466)
T ss_dssp CSS-CCCBCGG-GTTCTTCCEEECCCE-EEECCC
T ss_pred CCC-ccCccch-hhcCCCCCEEeccCC-cccCCc
Confidence 775 4555544 667777777777776 344444
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.8e-26 Score=245.05 Aligned_cols=419 Identities=21% Similarity=0.212 Sum_probs=198.3
Q ss_pred CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCCcceEeeccCcccccc
Q 045938 50 VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGT 129 (681)
Q Consensus 50 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 129 (681)
-...++|++|.++++. +..+|.++ +. +++|++|+++++. +.. .....+..+.+|+.+++.+|..
T Consensus 7 ~~~~~~L~~L~l~~n~-l~~iP~~i-~~-----L~~L~~L~l~~n~-~~~----~~p~~~~~l~~L~~l~l~~c~~---- 70 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSN-LTEMPVEA-EN-----VKSKTEYYNAWSE-WER----NAPPGNGEQREMAVSRLRDCLD---- 70 (454)
T ss_dssp ----------------------------------CCHHHHHHHHHH-HHH----TSCTTSCCCHHHHHHHHHHHHH----
T ss_pred ccccccchhhhcccCc-hhhCChhH-hc-----ccchhhhhccCCc-ccc----cCCcccccchhcchhhhhhhhc----
Confidence 3456889999998886 78787654 22 7777777777642 111 1111134555666666666542
Q ss_pred CCCCCCCccEEEEccCCCceeecCCCCcccEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceE
Q 045938 130 FPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEEL 209 (681)
Q Consensus 130 ~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 209 (681)
.++++|++++|.. ...-...++|++|+++++....
T Consensus 71 -----~~l~~L~l~~~~l-~~lp~~~~~L~~L~l~~n~l~~--------------------------------------- 105 (454)
T 1jl5_A 71 -----RQAHELELNNLGL-SSLPELPPHLESLVASCNSLTE--------------------------------------- 105 (454)
T ss_dssp -----HTCSEEECTTSCC-SCCCSCCTTCSEEECCSSCCSS---------------------------------------
T ss_pred -----cCCCEEEecCCcc-ccCCCCcCCCCEEEccCCcCCc---------------------------------------
Confidence 2355566655531 1100112345555554443211
Q ss_pred eecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCC
Q 045938 210 EINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLS 289 (681)
Q Consensus 210 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~ 289 (681)
.+ ..+++|+.|+++++ .++.++. .+++|++|++++|.. ..+| .++.++
T Consensus 106 -------------lp----~~~~~L~~L~l~~n-~l~~l~~------------~~~~L~~L~L~~n~l-~~lp-~~~~l~ 153 (454)
T 1jl5_A 106 -------------LP----ELPQSLKSLLVDNN-NLKALSD------------LPPLLEYLGVSNNQL-EKLP-ELQNSS 153 (454)
T ss_dssp -------------CC----CCCTTCCEEECCSS-CCSCCCS------------CCTTCCEEECCSSCC-SSCC-CCTTCT
T ss_pred -------------cc----cccCCCcEEECCCC-ccCcccC------------CCCCCCEEECcCCCC-CCCc-ccCCCC
Confidence 11 12367777777765 4554432 126788888888876 4577 588899
Q ss_pred CcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEe
Q 045938 290 SLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTV 369 (681)
Q Consensus 290 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~ 369 (681)
+|++|++++|. ++.+|.. .++|++|++++|. +..+|. + ..+++|+.|++++| .++.++.. +
T Consensus 154 ~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~-l~~l~~-~--~~l~~L~~L~l~~N-~l~~l~~~--~--------- 214 (454)
T 1jl5_A 154 FLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQ-LEELPE-L--QNLPFLTAIYADNN-SLKKLPDL--P--------- 214 (454)
T ss_dssp TCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSS-CCSSCCCC--C---------
T ss_pred CCCEEECCCCc-CcccCCC--cccccEEECcCCc-CCcCcc-c--cCCCCCCEEECCCC-cCCcCCCC--c---------
Confidence 99999999875 6666543 4689999999886 666764 3 78888999988875 34333211 0
Q ss_pred cccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccE
Q 045938 370 EEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLET 449 (681)
Q Consensus 370 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 449 (681)
++|++|+++++ .++. ++ . ++.++. |++|++++|...+ +|. .+++|++
T Consensus 215 ---------------~~L~~L~l~~n-~l~~-lp-----~------~~~l~~-L~~L~l~~N~l~~-l~~---~~~~L~~ 261 (454)
T 1jl5_A 215 ---------------LSLESIVAGNN-ILEE-LP-----E------LQNLPF-LTTIYADNNLLKT-LPD---LPPSLEA 261 (454)
T ss_dssp ---------------TTCCEEECCSS-CCSS-CC-----C------CTTCTT-CCEEECCSSCCSS-CCS---CCTTCCE
T ss_pred ---------------CcccEEECcCC-cCCc-cc-----c------cCCCCC-CCEEECCCCcCCc-ccc---cccccCE
Confidence 14677777664 2332 11 0 344444 7778877775543 332 2467777
Q ss_pred EEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCC
Q 045938 450 ISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGE 529 (681)
Q Consensus 450 L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~ 529 (681)
|++++|.+.+ +|.. .++|+.|++++|. +..++.. .++|+.|++++|... .++. ..++|++|++++|..
T Consensus 262 L~l~~N~l~~-l~~~---~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N~l~-~i~~---~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 262 LNVRDNYLTD-LPEL---PQSLTFLDVSENI-FSGLSEL---PPNLYYLNASSNEIR-SLCD---LPPSLEELNVSNNKL 329 (454)
T ss_dssp EECCSSCCSC-CCCC---CTTCCEEECCSSC-CSEESCC---CTTCCEEECCSSCCS-EECC---CCTTCCEEECCSSCC
T ss_pred EECCCCcccc-cCcc---cCcCCEEECcCCc-cCcccCc---CCcCCEEECcCCcCC-cccC---CcCcCCEEECCCCcc
Confidence 7777777654 3432 3677777777776 3344431 246777777777643 2322 124777777777764
Q ss_pred CCCccccCCCCCCCceeeeecCcccc---cCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccc
Q 045938 530 LPSLEEDDGLPTNLHRLEIIDNKKIW---KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL 606 (681)
Q Consensus 530 ~~~~~~~~~~~~~L~~L~l~~~~~~~---~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l 606 (681)
.+ +|. .+++|++|++++|.... .+++|++|++++| .+..+|. .+..+..++.. .....+
T Consensus 330 ~~-lp~---~~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N--~l~~l~~----------ip~~l~~L~~n--~~~~~i 391 (454)
T 1jl5_A 330 IE-LPA---LPPRLERLIASFNHLAEVPELPQNLKQLHVEYN--PLREFPD----------IPESVEDLRMN--SHLAEV 391 (454)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS--CCSSCCC----------CCTTCCEEECC--C-----
T ss_pred cc-ccc---cCCcCCEEECCCCccccccchhhhccEEECCCC--CCCcCCC----------ChHHHHhhhhc--cccccc
Confidence 43 443 24677777777776411 3556777777765 3443332 22233333321 122233
Q ss_pred cccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchh
Q 045938 607 SSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL 649 (681)
Q Consensus 607 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 649 (681)
|. .+++|+.|++++| .++.+|. ++++++.|.+.+|..
T Consensus 392 ~~---~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 392 PE---LPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSERV 428 (454)
T ss_dssp -------------------------------------------
T ss_pred cc---ccCcCCEEECCCC-cCCcccc--chhhHhheeCcCccc
Confidence 32 2489999999998 4555544 567888888888753
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.1e-25 Score=240.24 Aligned_cols=139 Identities=15% Similarity=0.087 Sum_probs=110.2
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
+|++|++++|...+..+..+..+++|++|++++|.+.+..+..++++++|++|++++|...+..+..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 48999999988877777788889999999999998888878888889999999999887544445566778899999999
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcc
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSL 560 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L 560 (681)
+|......|..+..+++|++|++++|...+..+..++.+++|++|++++|+....++.+
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 98876666778888999999999998766544445677778888888877764444433
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=8.5e-25 Score=241.66 Aligned_cols=401 Identities=15% Similarity=0.110 Sum_probs=228.2
Q ss_pred CCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCC
Q 045938 204 PKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQ 283 (681)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~ 283 (681)
++|++|++.++.... .+...+..+++|++|+++++ .++.+++..+ ...++|++|++++|.. ..+|.
T Consensus 52 ~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--------~~l~~L~~L~Ls~N~l-~~lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHN-RIRSLDFHVF--------LFNQDLEYLDVSHNRL-QNISC 117 (562)
T ss_dssp TTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSC-CCCEECTTTT--------TTCTTCCEEECTTSCC-CEECS
T ss_pred CCcCEEECCCCCccc----cChhhhccCCCccEEECCCC-CCCcCCHHHh--------CCCCCCCEEECCCCcC-CccCc
Confidence 456666665554222 22334455666666666655 4444433211 1225566666666554 34554
Q ss_pred CCCCCCCcceEEEeCCCCceeec---CCCCCCCceEEEEecCCCCCccccccccCCCCcc--ceeeeccCCCc-cccccc
Q 045938 284 SPLSLSSLREIEIYGCSSLVSFP---EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSL--EILEIWICNSL-TYIAGV 357 (681)
Q Consensus 284 ~~~~l~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L--~~L~l~~c~~l-~~~~~~ 357 (681)
. .+++|++|++++|. +..++ ..+.+++|++|++++|. +..... ..+++| +.|+++++.-. ......
T Consensus 118 ~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~ 189 (562)
T 3a79_B 118 C--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDL----LPVAHLHLSCILLDLVSYHIKGGETE 189 (562)
T ss_dssp C--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCC
T ss_pred c--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-cccCch----hhhhhceeeEEEeecccccccccCcc
Confidence 4 55666666666554 43332 23345566666666654 222111 222333 66666554220 111100
Q ss_pred cCCC-Cce-eEEEeccccccccccc--ccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCC
Q 045938 358 QLPP-SLK-WTLTVEEGIQSSSSSR--RYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSE 433 (681)
Q Consensus 358 ~~~~-~l~-~~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~ 433 (681)
.+.. ..+ ..+.+.++.....+.. ....++|+.+++++...... .+++.+.. +...+. ++.+++.++..
T Consensus 190 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-----~l~~~~~~--l~~l~~-L~~L~L~~~~l 261 (562)
T 3a79_B 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-----RLMTFLSE--LTRGPT-LLNVTLQHIET 261 (562)
T ss_dssp EEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-----HHHHHHHH--HHSCSS-CEEEEEEEEEE
T ss_pred cccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-----hHHHHHHH--HhccCc-ceEEEecCCcC
Confidence 0000 000 0112222221111111 11234566666665320000 01111111 233333 55565555543
Q ss_pred chhHH---HhcccCCCccEEEeecccCcccccCcC-----cCc--------------------------ccccEEeeccC
Q 045938 434 LESIA---ERLDNNTSLETISISECENLKILPSGL-----HNL--------------------------RQLQEIGIWEC 479 (681)
Q Consensus 434 ~~~~~---~~l~~l~~L~~L~ls~~~~~~~~~~~l-----~~l--------------------------~~L~~L~l~~~ 479 (681)
..... ......++|++|++++|.+.+.+|..+ .++ .+|+.|++++|
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 32211 011223477777777777665555544 223 34666666665
Q ss_pred CCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCC--CccccCCCCCCCceeeeecCcc----
Q 045938 480 ENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELP--SLEEDDGLPTNLHRLEIIDNKK---- 553 (681)
Q Consensus 480 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~---- 553 (681)
... .++ ....+++|++|++++|......|..++.+++|++|++++|...+ .+|..++.+++|++|++++|..
T Consensus 342 ~~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 342 PFI-HMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCC-CCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred Ccc-ccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 532 111 11567899999999999877788889999999999999997654 3455688999999999999986
Q ss_pred ----cccCCcccEEEEeccCCCCc-CCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCc
Q 045938 554 ----IWKFSSLRQLTISGCDDDMV-SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLK 628 (681)
Q Consensus 554 ----~~~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 628 (681)
+..+++|++|++++|. +. .++. ..+++|+.|+++++ +++.+|..+..+++|++|++++| .++
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~--l~~~~~~---------~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~ 486 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNM--LTGSVFR---------CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLK 486 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSC--CCGGGGS---------SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCC
T ss_pred ChhhhcCcccCCEEECCCCC--CCcchhh---------hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCC
Confidence 2367899999999973 32 2222 13378999999997 89999998889999999999998 788
Q ss_pred ccCCC--CCcccccEEEeCCchh
Q 045938 629 YFPEK--GLPSSLLQLYIGGCPL 649 (681)
Q Consensus 629 ~l~~~--~~~~~L~~L~i~~c~~ 649 (681)
.+|.. ..+++|++|++++||.
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCHHHHhcCCCCCEEEecCCCc
Confidence 88874 4578999999999874
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.3e-24 Score=234.24 Aligned_cols=341 Identities=19% Similarity=0.218 Sum_probs=262.7
Q ss_pred cccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCC
Q 045938 229 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEV 308 (681)
Q Consensus 229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~ 308 (681)
..+++++.|++.++ .++.++.. ..+++|++|++++|.. ..++. +.++++|++|++++|. +..++..
T Consensus 43 ~~l~~l~~L~l~~~-~i~~l~~~----------~~l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~ 108 (466)
T 1o6v_A 43 TDLDQVTTLQADRL-GIKSIDGV----------EYLNNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQ-IADITPL 108 (466)
T ss_dssp HHHHTCCEEECCSS-CCCCCTTG----------GGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred hHhccccEEecCCC-CCccCcch----------hhhcCCCEEECCCCcc-CCchh-hhccccCCEEECCCCc-cccChhh
Confidence 45789999999987 56665431 3458999999999876 55655 8899999999999876 6666667
Q ss_pred CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcc
Q 045938 309 ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLE 388 (681)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~ 388 (681)
..+++|++|++++|. +..++. + ..+++|++|++++| .+..++.. ..+++|+
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~~------------------------~~l~~L~ 159 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-L--KNLTNLNRLELSSN-TISDISAL------------------------SGLTSLQ 159 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEEEEEE-EECCCGGG------------------------TTCTTCS
T ss_pred cCCCCCCEEECCCCC-CCCChH-H--cCCCCCCEEECCCC-ccCCChhh------------------------ccCCccc
Confidence 789999999999986 666665 2 78999999999986 34333221 1233588
Q ss_pred eeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCc
Q 045938 389 GLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNL 468 (681)
Q Consensus 389 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l 468 (681)
+|++++ .+..+.+ +..++. |++|++++|.... + ..+..+++|++|++++|.+.+..+ ++.+
T Consensus 160 ~L~l~~--~~~~~~~------------~~~l~~-L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 220 (466)
T 1o6v_A 160 QLSFGN--QVTDLKP------------LANLTT-LERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGIL 220 (466)
T ss_dssp EEEEEE--SCCCCGG------------GTTCTT-CCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGC
T ss_pred EeecCC--cccCchh------------hccCCC-CCEEECcCCcCCC-C-hhhccCCCCCEEEecCCccccccc--cccc
Confidence 888864 2222111 555666 9999999997544 3 358899999999999998877554 6778
Q ss_pred ccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeee
Q 045938 469 RQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEI 548 (681)
Q Consensus 469 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 548 (681)
++|+.|++++|. +..++ .+..+++|+.|++++|......+ +..+++|++|++++|...+ +++ ++.+++|++|++
T Consensus 221 ~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L 294 (466)
T 1o6v_A 221 TNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLEL 294 (466)
T ss_dssp TTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEEC
T ss_pred CCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEc
Confidence 999999999987 44444 35678899999999998654333 7889999999999997654 444 888999999999
Q ss_pred ecCcc-----cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecC
Q 045938 549 IDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELED 623 (681)
Q Consensus 549 ~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 623 (681)
++|.. +..+++|+.|++++| .+..++.. ..+++|+.|+++++ .+..++ .+..+++|+.|++++
T Consensus 295 ~~n~l~~~~~~~~l~~L~~L~L~~n--~l~~~~~~--------~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 295 NENQLEDISPISNLKNLTYLTLYFN--NISDISPV--------SSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGH 362 (466)
T ss_dssp CSSCCSCCGGGGGCTTCSEEECCSS--CCSCCGGG--------GGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCS
T ss_pred CCCcccCchhhcCCCCCCEEECcCC--cCCCchhh--------ccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCC
Confidence 99987 558899999999998 55555442 47789999999997 677774 688899999999999
Q ss_pred CCCCcccCCCCCcccccEEEeCCchhH
Q 045938 624 CPKLKYFPEKGLPSSLLQLYIGGCPLI 650 (681)
Q Consensus 624 c~~l~~l~~~~~~~~L~~L~i~~c~~l 650 (681)
|. +..+++...+++|++|++++|+..
T Consensus 363 n~-l~~~~~~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 363 NQ-ISDLTPLANLTRITQLGLNDQAWT 388 (466)
T ss_dssp SC-CCBCGGGTTCTTCCEEECCCEEEE
T ss_pred Cc-cCccchhhcCCCCCEEeccCCccc
Confidence 84 555554666899999999998644
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4.4e-25 Score=237.66 Aligned_cols=340 Identities=17% Similarity=0.128 Sum_probs=228.1
Q ss_pred CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--CCCCCCceEEEEecCCCCCccccccccCCCCccce
Q 045938 265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEI 342 (681)
Q Consensus 265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 342 (681)
++|++|++++|......|..++++++|++|++++|.....++. ...+++|++|++++|......|..+ ..+++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF--NGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT--TTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc--cCcccCCE
Confidence 5677777777666444466677777777777777654334432 3446777777777766333334443 56677777
Q ss_pred eeeccCCCccc-cccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938 343 LEIWICNSLTY-IAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP 421 (681)
Q Consensus 343 L~l~~c~~l~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 421 (681)
|++++|. +++ .+....... .++|++|+++++. ++.+.+ .. .+..++.
T Consensus 108 L~L~~n~-l~~~~~~~~~~~~---------------------l~~L~~L~L~~n~-l~~~~~-----~~----~~~~l~~ 155 (455)
T 3v47_A 108 LTLTQCN-LDGAVLSGNFFKP---------------------LTSLEMLVLRDNN-IKKIQP-----AS----FFLNMRR 155 (455)
T ss_dssp EECTTSC-CBTHHHHSSTTTT---------------------CTTCCEEECCSSB-CCSCCC-----CG----GGGGCTT
T ss_pred EeCCCCC-CCccccCcccccC---------------------cccCCEEECCCCc-cCccCc-----cc----ccCCCCc
Confidence 7777653 322 111111111 2246777766643 222111 00 0334444
Q ss_pred CCcEEEEcCCCCchhHHHhcccC--CCccEEEeecccCcccccCc--------CcCcccccEEeeccCCCceecCCCCC-
Q 045938 422 SLKSLDVWSCSELESIAERLDNN--TSLETISISECENLKILPSG--------LHNLRQLQEIGIWECENLVSFPQGGL- 490 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~ls~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~l~~l~~~~~- 490 (681)
|++|++++|...+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|......+..+.
T Consensus 156 -L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 156 -FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp -CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred -ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 9999999998777666666665 78999999999887644333 23568899999999876544443221
Q ss_pred --CCCCcceEeecccccccccc----------ccCc--ccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc---
Q 045938 491 --PCAKLTRLEISYCKRLQVLP----------KGLH--NLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--- 553 (681)
Q Consensus 491 --~~~~L~~L~l~~~~~l~~~~----------~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--- 553 (681)
..++|+.|++++|....... ..+. ..++|+.|++++|...+..+..++.+++|++|++++|..
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 23688899988875433211 1111 236899999999988877787889999999999999986
Q ss_pred ----cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccc-cccccCCCCCCEEeecCCCCCc
Q 045938 554 ----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL-SSSIVDLQNLTHLELEDCPKLK 628 (681)
Q Consensus 554 ----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~ 628 (681)
+.++++|++|++++| .+..++...+ ..+++|++|+++++ .+..+ |..+..+++|++|++++| .++
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 384 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQN--FLGSIDSRMF------ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLK 384 (455)
T ss_dssp CTTTTTTCTTCCEEECCSS--CCCEECGGGG------TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred ChhHhcCcccCCEEECCCC--ccCCcChhHh------cCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccc
Confidence 457899999999997 5566654432 46789999999997 66666 568889999999999997 677
Q ss_pred ccCCC--CCcccccEEEeCCchh
Q 045938 629 YFPEK--GLPSSLLQLYIGGCPL 649 (681)
Q Consensus 629 ~l~~~--~~~~~L~~L~i~~c~~ 649 (681)
.+|.. ..+++|++|++++|+.
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCHhHhccCCcccEEEccCCCc
Confidence 88774 3578999999998864
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.7e-24 Score=224.19 Aligned_cols=192 Identities=21% Similarity=0.158 Sum_probs=115.5
Q ss_pred CCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938 418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR 497 (681)
Q Consensus 418 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 497 (681)
.++. |++|++++|......+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|... .++. +..+++|++
T Consensus 153 ~l~~-L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~ 225 (347)
T 4fmz_A 153 NMTG-LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-VANMTRLNS 225 (347)
T ss_dssp TCTT-CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCE
T ss_pred hCCC-CcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch-hhcCCcCCE
Confidence 3444 7777777775444322 6677777777777776654322 556677777777766533 3322 455667777
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCc
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPP 577 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~ 577 (681)
|++++|... .++. +..+++|++|++++|.... ++ .+..++ +|++|++++| .+..++.
T Consensus 226 L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~-----------------~L~~L~l~~n--~l~~~~~ 282 (347)
T 4fmz_A 226 LKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISD-IN-AVKDLT-----------------KLKMLNVGSN--QISDISV 282 (347)
T ss_dssp EECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCT-----------------TCCEEECCSS--CCCCCGG
T ss_pred EEccCCccC-CCcc-hhcCCCCCEEECCCCccCC-Ch-hHhcCC-----------------CcCEEEccCC--ccCCChh
Confidence 777776643 3333 5666677777776665333 22 244444 4555555554 3333322
Q ss_pred cccccccCCCcccccceeEecccCCcc-cccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchh
Q 045938 578 EDIRLRTTLPLPACLASLMIGNFPNLE-RLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL 649 (681)
Q Consensus 578 ~~~~~~~~~~~~~~L~~l~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 649 (681)
. ..+++|+.|+++++ .+. ..+..+..+++|++|++++|+ +..++....+++|++|++++|+.
T Consensus 283 -~-------~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 283 -L-------NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQVI 345 (347)
T ss_dssp -G-------GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC--
T ss_pred -h-------cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhcc
Confidence 1 35566777777776 344 334567788899999999984 66665555678899999998863
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3.6e-24 Score=221.76 Aligned_cols=297 Identities=17% Similarity=0.208 Sum_probs=206.3
Q ss_pred cccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCC
Q 045938 229 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEV 308 (681)
Q Consensus 229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~ 308 (681)
..+++|+.|+++++ .++.++.- ..+++|++|++++|.. ..++. +..+++|++|++++|. ++.++..
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~~----------~~~~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQGI----------EYLTNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTNK-ITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTTG----------GGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred hhcccccEEEEeCC-ccccchhh----------hhcCCccEEEccCCcc-ccchh-hhcCCcCCEEEccCCc-ccCchHH
Confidence 46777888888776 45554321 2347788888888755 45554 7778888888888764 6666666
Q ss_pred CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcc
Q 045938 309 ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLE 388 (681)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~ 388 (681)
..+++|++|++++|. +..++. + ..+++|+.|++++|..+..++.. ...++|+
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~--~~l~~L~~L~l~~n~~~~~~~~~------------------------~~l~~L~ 158 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-L--ANLTKMYSLNLGANHNLSDLSPL------------------------SNMTGLN 158 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-G--TTCTTCCEEECTTCTTCCCCGGG------------------------TTCTTCC
T ss_pred cCCCcCCEEECcCCc-ccCchh-h--ccCCceeEEECCCCCCcccccch------------------------hhCCCCc
Confidence 677888888888776 555555 2 67788888888877655544321 1223577
Q ss_pred eeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCc
Q 045938 389 GLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNL 468 (681)
Q Consensus 389 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l 468 (681)
+|+++++. +..+.+ +..++. |++|++++|...+. +. +..+++|+++++++|.+.+..+ +..+
T Consensus 159 ~L~l~~~~-~~~~~~------------~~~l~~-L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~ 220 (347)
T 4fmz_A 159 YLTVTESK-VKDVTP------------IANLTD-LYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANM 220 (347)
T ss_dssp EEECCSSC-CCCCGG------------GGGCTT-CSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred EEEecCCC-cCCchh------------hccCCC-CCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcC
Confidence 88877753 222111 344555 99999999976543 32 8899999999999998876544 7789
Q ss_pred ccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeee
Q 045938 469 RQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEI 548 (681)
Q Consensus 469 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 548 (681)
++|++|++++|.. ..++. +..+++|++|++++|... .+ ..+..+++|++|++++|...+ ++. +..+++|++|++
T Consensus 221 ~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 TRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIGTNQIS-DI-NAVKDLTKLKMLNVGSNQISD-ISV-LNNLSQLNSLFL 294 (347)
T ss_dssp TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCC-CC-GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEEC
T ss_pred CcCCEEEccCCcc-CCCcc-hhcCCCCCEEECCCCccC-CC-hhHhcCCCcCEEEccCCccCC-Chh-hcCCCCCCEEEC
Confidence 9999999999874 44554 778899999999999754 44 457889999999999997544 333 666677777777
Q ss_pred ecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEee
Q 045938 549 IDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLEL 621 (681)
Q Consensus 549 ~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l 621 (681)
++|.. +.++++|++|++++| .+..++. +..+++|++|++
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n---------------------------------~l~~~~~-~~~l~~L~~L~l 340 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQN---------------------------------HITDIRP-LASLSKMDSADF 340 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSS---------------------------------SCCCCGG-GGGCTTCSEESS
T ss_pred cCCcCCCcChhHhhccccCCEEEccCC---------------------------------ccccccC-hhhhhccceeeh
Confidence 76654 224555555555554 3444544 677889999999
Q ss_pred cCCC
Q 045938 622 EDCP 625 (681)
Q Consensus 622 ~~c~ 625 (681)
++|+
T Consensus 341 ~~N~ 344 (347)
T 4fmz_A 341 ANQV 344 (347)
T ss_dssp SCC-
T ss_pred hhhc
Confidence 8884
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.4e-23 Score=227.22 Aligned_cols=291 Identities=17% Similarity=0.175 Sum_probs=205.3
Q ss_pred cCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec--CCCCCCCceEEEEecCCCCCccccccccCCCCccc
Q 045938 264 SCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP--EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLE 341 (681)
Q Consensus 264 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 341 (681)
++++++|++++|......+..+.++++|++|++++|. +..+. ....+++|++|++++|. +..++...+ ..+++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCC
Confidence 3567777777766644445566677777777777664 55442 23446677777777765 555554432 5567777
Q ss_pred eeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938 342 ILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP 421 (681)
Q Consensus 342 ~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 421 (681)
.|+++++ .+..+....+ ..+++|++|+++++ .++.+.+ . .+..++.
T Consensus 108 ~L~Ls~n-~i~~~~~~~~----------------------~~l~~L~~L~l~~n-~l~~~~~-~---------~~~~l~~ 153 (477)
T 2id5_A 108 KLDISEN-KIVILLDYMF----------------------QDLYNLKSLEVGDN-DLVYISH-R---------AFSGLNS 153 (477)
T ss_dssp EEECTTS-CCCEECTTTT----------------------TTCTTCCEEEECCT-TCCEECT-T---------SSTTCTT
T ss_pred EEECCCC-ccccCChhHc----------------------cccccCCEEECCCC-ccceeCh-h---------hccCCCC
Confidence 7777664 3333221111 11234666666663 2322110 0 1445555
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
|++|++++|......+..+.++++|+.|++++|.+....+..+..+++|+.|++++|.....++.......+|++|+++
T Consensus 154 -L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 154 -LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp -CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred -CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 9999999997766666678999999999999999988777788999999999999999888888877777799999999
Q ss_pred ccccccccc-ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCc
Q 045938 502 YCKRLQVLP-KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMV 573 (681)
Q Consensus 502 ~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~ 573 (681)
+|... .+| ..+..+++|+.|++++|...+..+..+..+++|++|++++|.. +.++++|+.|++++| .+.
T Consensus 233 ~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~ 309 (477)
T 2id5_A 233 HCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN--QLT 309 (477)
T ss_dssp SSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS--CCS
T ss_pred CCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC--cCc
Confidence 99854 455 4678899999999999987665566688899999999999876 447888999999987 677
Q ss_pred CCCccccccccCCCcccccceeEecccC
Q 045938 574 SFPPEDIRLRTTLPLPACLASLMIGNFP 601 (681)
Q Consensus 574 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 601 (681)
.++...+ ..+++|+.|++++++
T Consensus 310 ~~~~~~~------~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 310 TLEESVF------HSVGNLETLILDSNP 331 (477)
T ss_dssp CCCGGGB------SCGGGCCEEECCSSC
T ss_pred eeCHhHc------CCCcccCEEEccCCC
Confidence 7776543 456778888888753
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.1e-23 Score=225.90 Aligned_cols=306 Identities=18% Similarity=0.150 Sum_probs=164.2
Q ss_pred cEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec--CCCCCCCceEEEEecCCCCCcc-ccccccCCCCccceee
Q 045938 268 EYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP--EVALPSKLKKIEIRECDALKSL-PEAWMCDTNSSLEILE 344 (681)
Q Consensus 268 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~ 344 (681)
+.++.++.. +..+|..+. ++++.|++++|. ++.++ ....+++|++|++++|. +..+ |..+ ..+++|+.|+
T Consensus 14 ~~v~c~~~~-l~~ip~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~--~~l~~L~~L~ 86 (477)
T 2id5_A 14 RAVLCHRKR-FVAVPEGIP--TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENI-VSAVEPGAF--NNLFNLRTLG 86 (477)
T ss_dssp TEEECCSCC-CSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEE
T ss_pred CEEEeCCCC-cCcCCCCCC--CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCc-cCEeChhhh--hCCccCCEEE
Confidence 344444433 366776553 689999999876 77664 35568899999999986 5554 4444 7788999999
Q ss_pred eccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCc
Q 045938 345 IWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLK 424 (681)
Q Consensus 345 l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~ 424 (681)
++++ .++.++...+. .+++|++|+++++. ++.+.+ . .+..++. |+
T Consensus 87 L~~n-~l~~~~~~~~~----------------------~l~~L~~L~Ls~n~-i~~~~~-----~-----~~~~l~~-L~ 131 (477)
T 2id5_A 87 LRSN-RLKLIPLGVFT----------------------GLSNLTKLDISENK-IVILLD-----Y-----MFQDLYN-LK 131 (477)
T ss_dssp CCSS-CCCSCCTTSST----------------------TCTTCCEEECTTSC-CCEECT-----T-----TTTTCTT-CC
T ss_pred CCCC-cCCccCccccc----------------------CCCCCCEEECCCCc-cccCCh-----h-----Hcccccc-CC
Confidence 9874 45444322110 11246666665532 222100 0 0333333 66
Q ss_pred EEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccc
Q 045938 425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCK 504 (681)
Q Consensus 425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 504 (681)
+|++++|......+..+..+++|++|++++|.+....+..+.++++|+.|++++|......+..+..+++|++|++++|.
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 66666665544444455666666666666665554444445556666666666655433333344555666666666665
Q ss_pred ccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCc
Q 045938 505 RLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPP 577 (681)
Q Consensus 505 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~ 577 (681)
....++.......+|++|++++|......+..++.+++|++|++++|.+ +.++++|++|++++| .+..++.
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~ 289 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG--QLAVVEP 289 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS--CCSEECT
T ss_pred cccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC--ccceECH
Confidence 5555555554445666666666654332223355555566666655543 234455555555554 2333222
Q ss_pred cccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCC
Q 045938 578 EDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDC 624 (681)
Q Consensus 578 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c 624 (681)
..+ ..+++|+.|+++++ .+..++. .+..+++|+.|++++|
T Consensus 290 ~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 290 YAF------RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp TTB------TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred HHh------cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 111 23344444444443 3444433 2334444444444444
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2e-23 Score=223.19 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=78.6
Q ss_pred CCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCc-
Q 045938 417 GNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKL- 495 (681)
Q Consensus 417 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L- 495 (681)
..++. |++|++++|...+. .++.+++|++|++++|.+.+ +| ++.+++|+.|++++|... .++ ...+++|
T Consensus 188 ~~l~~-L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~--~~~l~~L~ 257 (457)
T 3bz5_A 188 SQNKL-LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLT 257 (457)
T ss_dssp TTCTT-CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCC--CTTCTTCC
T ss_pred ccCCC-CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC-CcC--HHHCCCCC
Confidence 33444 77777776655442 36666777777777776665 33 556667777777766532 333 1223333
Q ss_pred ---------ceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEe
Q 045938 496 ---------TRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTIS 566 (681)
Q Consensus 496 ---------~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~ 566 (681)
+.+++++|.....+| .+.+++|+.|++++|...+.+|. ..++|+.|+++ ++++|++|+++
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~------~~~~L~~L~L~ 326 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS------QNPKLVYLYLN 326 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT------TCTTCCEEECT
T ss_pred EEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh------hcccCCEEECC
Confidence 344444444444443 34456666666666655555442 23344444443 23556666666
Q ss_pred ccCCCCcCCCccccccccCCCcccccceeEecc
Q 045938 567 GCDDDMVSFPPEDIRLRTTLPLPACLASLMIGN 599 (681)
Q Consensus 567 ~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~ 599 (681)
+| .+..++ . ..+++|+.|++++
T Consensus 327 ~N--~l~~l~--l-------~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 327 NT--ELTELD--V-------SHNTKLKSLSCVN 348 (457)
T ss_dssp TC--CCSCCC--C-------TTCTTCSEEECCS
T ss_pred CC--cccccc--c-------ccCCcCcEEECCC
Confidence 55 333332 1 3445555555554
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=6.3e-23 Score=215.89 Aligned_cols=307 Identities=15% Similarity=0.065 Sum_probs=181.8
Q ss_pred ccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--
Q 045938 230 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-- 307 (681)
Q Consensus 230 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-- 307 (681)
.+++++.|+++++ .++.+|...+ ..+++|++|++++|......+..+..+++|++|++++|. ++.++.
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~--------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALL--------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 112 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHH--------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred ccCCceEEEecCC-chhhCChhHh--------cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHH
Confidence 4567777777775 5666665421 223777777777776643344467777788888887765 555432
Q ss_pred CCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCc
Q 045938 308 VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLL 387 (681)
Q Consensus 308 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L 387 (681)
...+++|++|++++|. +..+|...+ ..+++|++|+++++ .++.++...
T Consensus 113 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~----------------------------- 160 (390)
T 3o6n_A 113 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNN-NLERIEDDT----------------------------- 160 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTT-----------------------------
T ss_pred hcCCCCCCEEECCCCc-cCcCCHHHh-cCCCCCcEEECCCC-ccCccChhh-----------------------------
Confidence 3456777777777765 555555432 45667777777664 222221100
Q ss_pred ceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcC
Q 045938 388 EGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHN 467 (681)
Q Consensus 388 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~ 467 (681)
+..++. |++|++++|..... .+..+++|++|++++|.+... ..
T Consensus 161 ----------------------------~~~l~~-L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~ 203 (390)
T 3o6n_A 161 ----------------------------FQATTS-LQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AI 203 (390)
T ss_dssp ----------------------------TSSCTT-CCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----EC
T ss_pred ----------------------------ccCCCC-CCEEECCCCcCCcc---ccccccccceeeccccccccc-----CC
Confidence 222333 66666666644332 245566677777766655432 22
Q ss_pred cccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938 468 LRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE 547 (681)
Q Consensus 468 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 547 (681)
.++|+.|++++|. +..++... +++|+.|++++|.... . ..+..+++|++|++++|...+..+..++.+++|++|+
T Consensus 204 ~~~L~~L~l~~n~-l~~~~~~~--~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 204 PIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp CSSCSEEECCSSC-CCEEECCC--CSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred CCcceEEECCCCe-eeeccccc--cccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 3567777777766 33444322 3577777777776433 2 3566777777777777766555555566666666666
Q ss_pred eecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCC
Q 045938 548 IIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKL 627 (681)
Q Consensus 548 l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 627 (681)
+++|+. ..++... ..+++|+.|+++++ .+..+|..+..+++|++|++++| .+
T Consensus 279 L~~n~l-------------------~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i 330 (390)
T 3o6n_A 279 ISNNRL-------------------VALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SI 330 (390)
T ss_dssp CCSSCC-------------------CEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CC
T ss_pred CCCCcC-------------------cccCccc-------CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-cc
Confidence 665543 2222111 23345555555554 55666666677788888888887 45
Q ss_pred cccCCCCCcccccEEEeCCchh
Q 045938 628 KYFPEKGLPSSLLQLYIGGCPL 649 (681)
Q Consensus 628 ~~l~~~~~~~~L~~L~i~~c~~ 649 (681)
+.++ ...+++|++|++++|+.
T Consensus 331 ~~~~-~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 331 VTLK-LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCCC-CCTTCCCSEEECCSSCE
T ss_pred ceeC-chhhccCCEEEcCCCCc
Confidence 6665 34567788888888763
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.9e-23 Score=221.84 Aligned_cols=224 Identities=17% Similarity=0.093 Sum_probs=126.8
Q ss_pred cccceeEEEEeecCCCCCCCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCcc
Q 045938 29 SFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQG 108 (681)
Q Consensus 29 ~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 108 (681)
.+++|++|+++++ .++.+|.++.+++|++|+++++. ++.++ ++ .+++|++|+++++. +....
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~---~~-----~l~~L~~L~Ls~N~-l~~~~------- 101 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD---LS-----QNTNLTYLACDSNK-LTNLD------- 101 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC---CT-----TCTTCSEEECCSSC-CSCCC-------
T ss_pred HcCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc---cc-----cCCCCCEEECcCCC-Cceee-------
Confidence 4788888888886 56777778888888888888876 66654 22 27788888887743 22221
Q ss_pred ccccCCcceEeeccCccccccCCCCCCCccEEEEccCCCceeecCCCCcccEEEECCCCCceeeccccccCCCCcceeec
Q 045938 109 VERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRD 188 (681)
Q Consensus 109 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (681)
+..+++|++|+++++ ++++.-...+++|++|+++++......+..+++|++|++++|.
T Consensus 102 ~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~--------------------- 159 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK--------------------- 159 (457)
T ss_dssp CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCS---------------------
T ss_pred cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCC---------------------
Confidence 455777777777775 3332111234445555544443221123334444444444442
Q ss_pred CCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCcc
Q 045938 189 TSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILE 268 (681)
Q Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~ 268 (681)
.... . .+..+++|+.|+++++ .++.++. ..+++|+
T Consensus 160 ---------------------------~~~~---~---~~~~l~~L~~L~ls~n-~l~~l~l-----------~~l~~L~ 194 (457)
T 3bz5_A 160 ---------------------------KITK---L---DVTPQTQLTTLDCSFN-KITELDV-----------SQNKLLN 194 (457)
T ss_dssp ---------------------------CCCC---C---CCTTCTTCCEEECCSS-CCCCCCC-----------TTCTTCC
T ss_pred ---------------------------cccc---c---ccccCCcCCEEECCCC-ccceecc-----------ccCCCCC
Confidence 2221 1 1345566666666655 4444331 1235666
Q ss_pred EEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeecc
Q 045938 269 YIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWI 347 (681)
Q Consensus 269 ~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 347 (681)
+|++++|.. ..+ .++.+++|++|++++|. ++.+| ...+++|++|++++|. +..++. ..+++|+.|+++.
T Consensus 195 ~L~l~~N~l-~~~--~l~~l~~L~~L~Ls~N~-l~~ip-~~~l~~L~~L~l~~N~-l~~~~~----~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 195 RLNCDTNNI-TKL--DLNQNIQLTFLDCSSNK-LTEID-VTPLTQLTYFDCSVNP-LTELDV----STLSKLTTLHCIQ 263 (457)
T ss_dssp EEECCSSCC-SCC--CCTTCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSSC-CSCCCC----TTCTTCCEEECTT
T ss_pred EEECcCCcC-Cee--ccccCCCCCEEECcCCc-ccccC-ccccCCCCEEEeeCCc-CCCcCH----HHCCCCCEEeccC
Confidence 666666655 333 25566777777777654 55555 5556677777777665 444442 3456666666544
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.8e-22 Score=209.17 Aligned_cols=306 Identities=17% Similarity=0.179 Sum_probs=184.4
Q ss_pred CCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccC
Q 045938 202 RIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKL 281 (681)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l 281 (681)
.+.+++.|.+.++.. . ..+..++..+++|++|+++++ .++.++...+ ..+++|++|++++|......
T Consensus 43 ~l~~l~~l~l~~~~l-~---~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-R---KLPAALLDSFRQVELLNLNDL-QIEEIDTYAF--------AYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCEE-S---EECTHHHHHCCCCSEEECTTS-CCCEECTTTT--------TTCTTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCch-h---hCChhHhcccccCcEEECCCC-cccccChhhc--------cCCCCcCEEECCCCCCCcCC
Confidence 468889999888652 2 256666789999999999997 5776655421 34589999999999885555
Q ss_pred CCCCCCCCCcceEEEeCCCCceeecCC--CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccC
Q 045938 282 PQSPLSLSSLREIEIYGCSSLVSFPEV--ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQL 359 (681)
Q Consensus 282 ~~~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 359 (681)
|..++.+++|++|++++|. ++.++.. ..+++|++|++++|. +..++...+ ..+++|+.|+++++ .++.++. ..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~ 184 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDL-SL 184 (390)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSS-CCSBCCG-GG
T ss_pred HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCC-cCCcccc-cc
Confidence 6678999999999999886 7777753 458999999999987 555544322 78899999999985 4555432 22
Q ss_pred CCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHH
Q 045938 360 PPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAE 439 (681)
Q Consensus 360 ~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~ 439 (681)
.+.++ .+.+.++.. ..+ ...++|++|+++++ .++. ++ ...+++|++|++++|...+. .
T Consensus 185 l~~L~-~L~l~~n~l-~~~---~~~~~L~~L~l~~n-~l~~-~~-------------~~~~~~L~~L~l~~n~l~~~--~ 242 (390)
T 3o6n_A 185 IPSLF-HANVSYNLL-STL---AIPIAVEELDASHN-SINV-VR-------------GPVNVELTILKLQHNNLTDT--A 242 (390)
T ss_dssp CTTCS-EEECCSSCC-SEE---ECCSSCSEEECCSS-CCCE-EE-------------CCCCSSCCEEECCSSCCCCC--G
T ss_pred ccccc-eeecccccc-ccc---CCCCcceEEECCCC-eeee-cc-------------ccccccccEEECCCCCCccc--H
Confidence 33444 444443321 111 11224555555553 2222 11 11122366666666544332 3
Q ss_pred hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCc
Q 045938 440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSL 519 (681)
Q Consensus 440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L 519 (681)
.+..+++|++|++++|.+.+..|..+..+++|+.|++++|. +..++.....+++|++|++++|. +..+|..+..+++|
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L 320 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRL 320 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTC
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccccccCcC
Confidence 45556666666666665555555555556666666666554 33444444455566666666654 23444445555566
Q ss_pred ceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938 520 QQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 520 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 552 (681)
++|++++|.... ++ ++.+++|++|++++|+
T Consensus 321 ~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 321 ENLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SEEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred CEEECCCCccce-eC--chhhccCCEEEcCCCC
Confidence 666666555332 21 3344444444444443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.2e-22 Score=221.27 Aligned_cols=299 Identities=16% Similarity=0.093 Sum_probs=165.1
Q ss_pred ccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--
Q 045938 230 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-- 307 (681)
Q Consensus 230 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-- 307 (681)
.+.+++.++++++ .++.+|...+ ..+++|++|++++|......|..++.+++|++|++++|. +..++.
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALL--------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHH--------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCCceEEEeeCC-CCCCcCHHHH--------ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence 3566777777765 5666655421 223677777777776644444567777777777777765 555543
Q ss_pred CCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCc
Q 045938 308 VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLL 387 (681)
Q Consensus 308 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L 387 (681)
.+.+++|++|++++|. +..+|...+ ..+++|+.|++++| .+..++...
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~----------------------------- 166 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNN-NLERIEDDT----------------------------- 166 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTT-----------------------------
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHh-ccCCCCCEEEeeCC-cCCCCChhh-----------------------------
Confidence 2456777777777775 555555433 56677777777664 232221110
Q ss_pred ceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcC
Q 045938 388 EGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHN 467 (681)
Q Consensus 388 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~ 467 (681)
++.++. |++|++++|..... .++.+++|+.|++++|.+.+ +..
T Consensus 167 ----------------------------~~~l~~-L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~ 209 (597)
T 3oja_B 167 ----------------------------FQATTS-LQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAI 209 (597)
T ss_dssp ----------------------------TTTCTT-CCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EEC
T ss_pred ----------------------------hhcCCc-CcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccC
Confidence 222333 66666665544332 24455666666666665443 222
Q ss_pred cccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938 468 LRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE 547 (681)
Q Consensus 468 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 547 (681)
.++|+.|++++|. +..++... .++|+.|++++|.... +..++.+++|+.|++++|...+..|..++.+++|++|+
T Consensus 210 ~~~L~~L~ls~n~-l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 210 PIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp CTTCSEEECCSSC-CCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred CchhheeeccCCc-cccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 3466777777665 33444322 2467777777776433 24566677777777777766665566666666666666
Q ss_pred eecCcc------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEee
Q 045938 548 IIDNKK------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLEL 621 (681)
Q Consensus 548 l~~~~~------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l 621 (681)
+++|.. ...+++|+.|++++| .+..+|... ..+++|+.|+++++ .+..++ +..+++|+.|++
T Consensus 285 Ls~N~l~~l~~~~~~l~~L~~L~Ls~N--~l~~i~~~~-------~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l 352 (597)
T 3oja_B 285 ISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERNQ-------PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTL 352 (597)
T ss_dssp CTTSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGGH-------HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEEC
T ss_pred CCCCCCCCCCcccccCCCCcEEECCCC--CCCccCccc-------ccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEe
Confidence 666654 123555555555554 333333322 23344444444443 233332 334444555555
Q ss_pred cCC
Q 045938 622 EDC 624 (681)
Q Consensus 622 ~~c 624 (681)
++|
T Consensus 353 ~~N 355 (597)
T 3oja_B 353 SHN 355 (597)
T ss_dssp CSS
T ss_pred eCC
Confidence 444
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.4e-21 Score=200.52 Aligned_cols=239 Identities=15% Similarity=0.179 Sum_probs=142.5
Q ss_pred CccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--CCCCCCceEEEEecCCCCCcc-ccccccCCCCccce
Q 045938 266 ILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--VALPSKLKKIEIRECDALKSL-PEAWMCDTNSSLEI 342 (681)
Q Consensus 266 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~ 342 (681)
+++.++++++.. ..+|..+. ++++.|++++|. ++.++. ...+++|++|++++|. +..+ |..+ ..+++|+.
T Consensus 32 ~l~~l~~~~~~l-~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGL-EKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF--APLVKLER 104 (330)
T ss_dssp ETTEEECTTSCC-CSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT--TTCTTCCE
T ss_pred CCeEEEecCCCc-cccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc-CCeeCHHHh--cCCCCCCE
Confidence 466666665543 44554332 466666666654 544442 3445666666666655 3333 3333 45666666
Q ss_pred eeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCC
Q 045938 343 LEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPS 422 (681)
Q Consensus 343 L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 422 (681)
|+++++ .++.++. .++++
T Consensus 105 L~Ls~n-~l~~l~~-------------------------------------------------------------~~~~~ 122 (330)
T 1xku_A 105 LYLSKN-QLKELPE-------------------------------------------------------------KMPKT 122 (330)
T ss_dssp EECCSS-CCSBCCS-------------------------------------------------------------SCCTT
T ss_pred EECCCC-cCCccCh-------------------------------------------------------------hhccc
Confidence 666553 2222211 01123
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcc--cccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLK--ILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI 500 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 500 (681)
|++|++++|......+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|. +..+|.... ++|++|++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l 199 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHL 199 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEEC
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEEC
Confidence 7777777776655555567777777777777777643 445667777788888887766 445655443 57888888
Q ss_pred ccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcC
Q 045938 501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVS 574 (681)
Q Consensus 501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~ 574 (681)
++|......+..+..+++|++|++++|...+..+..++.+++|++|++++|.. +..+++|++|++++| .+..
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N--~i~~ 277 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN--NISA 277 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS--CCCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC--cCCc
Confidence 88775555566677777888888877775554444456666666666666654 335566666666665 4445
Q ss_pred CCcc
Q 045938 575 FPPE 578 (681)
Q Consensus 575 l~~~ 578 (681)
++..
T Consensus 278 ~~~~ 281 (330)
T 1xku_A 278 IGSN 281 (330)
T ss_dssp CCTT
T ss_pred cChh
Confidence 5443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.1e-21 Score=215.71 Aligned_cols=307 Identities=16% Similarity=0.156 Sum_probs=207.9
Q ss_pred CCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccC
Q 045938 202 RIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKL 281 (681)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l 281 (681)
.+.+++.+.+.++.. ...+..++..+++|+.|+++++ .++.+++..+ ..+++|++|++++|......
T Consensus 49 ~l~~l~~l~l~~~~l----~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDL-QIEEIDTYAF--------AYAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSCEE----SEECTHHHHHCCCCSEEECTTS-CCCEECTTTT--------TTCTTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCCCC----CCcCHHHHccCCCCcEEECCCC-CCCCCChHHh--------cCCCCCCEEECCCCcCCCCC
Confidence 357788888877542 2356667788999999999997 5777665422 34589999999999875555
Q ss_pred CCCCCCCCCcceEEEeCCCCceeecCC--CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccC
Q 045938 282 PQSPLSLSSLREIEIYGCSSLVSFPEV--ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQL 359 (681)
Q Consensus 282 ~~~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 359 (681)
|..++.+++|++|++++|. +..++.. ..+++|++|++++|. +..++...+ ..+++|+.|+++++ .++.++. ..
T Consensus 116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~ 190 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDL-SL 190 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTS-CCSBCCG-GG
T ss_pred HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCC-CCCCcCh-hh
Confidence 6677999999999999886 7777653 568999999999987 555544322 78899999999985 5555542 23
Q ss_pred CCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHH
Q 045938 360 PPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAE 439 (681)
Q Consensus 360 ~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~ 439 (681)
.+.++ .+.+.++... . ....++|++|+++++. ++. + .+..+++|+.|++++|...+. .
T Consensus 191 l~~L~-~L~l~~n~l~-~---l~~~~~L~~L~ls~n~-l~~-~-------------~~~~~~~L~~L~L~~n~l~~~--~ 248 (597)
T 3oja_B 191 IPSLF-HANVSYNLLS-T---LAIPIAVEELDASHNS-INV-V-------------RGPVNVELTILKLQHNNLTDT--A 248 (597)
T ss_dssp CTTCS-EEECCSSCCS-E---EECCTTCSEEECCSSC-CCE-E-------------ECSCCSCCCEEECCSSCCCCC--G
T ss_pred hhhhh-hhhcccCccc-c---ccCCchhheeeccCCc-ccc-c-------------ccccCCCCCEEECCCCCCCCC--h
Confidence 34555 5555543221 1 1122357777776642 332 1 122234577777777765542 4
Q ss_pred hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCc
Q 045938 440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSL 519 (681)
Q Consensus 440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L 519 (681)
.+..+++|++|++++|.+.+..|..++++++|+.|++++|. +..++.....+++|+.|++++|.. ..+|..+..+++|
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L 326 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRL 326 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTC
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCC-CccCcccccCCCC
Confidence 56777777777777777777777777777777777777766 445666666677777777777764 3566666777777
Q ss_pred ceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938 520 QQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 520 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 553 (681)
+.|++++|...+. + ++.+++|+.|++++|..
T Consensus 327 ~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 327 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCE
T ss_pred CEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCC
Confidence 7777777765432 2 45566666666666654
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2.2e-21 Score=199.27 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=81.1
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcc--cccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLK--ILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI 500 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 500 (681)
|++|++++|......+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|. +..+|.... ++|++|++
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l 200 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHL 200 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBC
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEEC
Confidence 5555555554433323345556666666666655532 334445544 66666666655 334544332 46666666
Q ss_pred ccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcC
Q 045938 501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVS 574 (681)
Q Consensus 501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~ 574 (681)
++|......+..+..+++|++|++++|...+..+..++.+++|++|++++|+. +..+++|+.|++++| .+..
T Consensus 201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N--~l~~ 278 (332)
T 2ft3_A 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN--NITK 278 (332)
T ss_dssp CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS--CCCB
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC--CCCc
Confidence 66665444445566666666666666655444444455555555555555543 335556666666665 4444
Q ss_pred CCcc
Q 045938 575 FPPE 578 (681)
Q Consensus 575 l~~~ 578 (681)
++..
T Consensus 279 ~~~~ 282 (332)
T 2ft3_A 279 VGVN 282 (332)
T ss_dssp CCTT
T ss_pred cChh
Confidence 4443
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=3.9e-22 Score=202.68 Aligned_cols=205 Identities=17% Similarity=0.091 Sum_probs=150.4
Q ss_pred CCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCC-Ccc
Q 045938 418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCA-KLT 496 (681)
Q Consensus 418 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~-~L~ 496 (681)
.++. |++|++++|...+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|...+.+|..+..++ +|+
T Consensus 99 ~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 99 KLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp GCTT-CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred cCCC-CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 3444 88888888877667777788888888888888888777788888888888888888876557777777776 888
Q ss_pred eEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCC
Q 045938 497 RLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFP 576 (681)
Q Consensus 497 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~ 576 (681)
+|++++|.....+|..+..++ |++|++++|...+..+..++.+++|++|++++|... ..+
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~ 237 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-------------------FDL 237 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-------------------CBG
T ss_pred EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-------------------eec
Confidence 888888887667777777776 888888888766666666777777777777766531 111
Q ss_pred ccccccccCCCcccccceeEecccCCcc-cccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhHH
Q 045938 577 PEDIRLRTTLPLPACLASLMIGNFPNLE-RLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIA 651 (681)
Q Consensus 577 ~~~~~~~~~~~~~~~L~~l~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~ 651 (681)
... ..+++|+.|+++++ .+. .+|..+..+++|++|++++|+....+|..+.+++|+.+++++|+.+.
T Consensus 238 ~~~-------~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 238 GKV-------GLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGC-------CCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred Ccc-------cccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 111 23455666666654 344 67777888899999999998555578877778889999999988553
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=4.4e-21 Score=196.06 Aligned_cols=231 Identities=23% Similarity=0.294 Sum_probs=182.9
Q ss_pred cCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC-CCCCCCceEEEEecCCCCCccccccccCCCCccce
Q 045938 264 SCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEI 342 (681)
Q Consensus 264 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 342 (681)
.+++++|++++|.. ..+|..+.++++|++|++++|. +..+|. ...+++|++|++++|. +..+|..+ ..+++|+.
T Consensus 80 ~~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCE
T ss_pred ccceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCE
Confidence 47889999998876 5788888889999999999876 556664 4568889999999886 55777765 77889999
Q ss_pred eeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCC
Q 045938 343 LEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPS 422 (681)
Q Consensus 343 L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 422 (681)
|++++|..+..++.. +....+.+ .+..++.
T Consensus 155 L~L~~n~~~~~~p~~-----------------------------~~~~~~~~--------------------~~~~l~~- 184 (328)
T 4fcg_A 155 LSIRACPELTELPEP-----------------------------LASTDASG--------------------EHQGLVN- 184 (328)
T ss_dssp EEEEEETTCCCCCSC-----------------------------SEEEC-CC--------------------CEEESTT-
T ss_pred EECCCCCCccccChh-----------------------------Hhhccchh--------------------hhccCCC-
Confidence 999888766555421 11111100 0223444
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|++|++++|... .+|..++.+++|++|++++|.+.+ +|..++++++|++|++++|...+.+|..+..+++|++|++++
T Consensus 185 L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 999999988655 677788999999999999998875 556788899999999999988888888888899999999999
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecC
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDN 551 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 551 (681)
|.....+|..++.+++|+.|++++|...+.+|..++.+++|+.+++..+
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9988999988999999999999999999999988888888777777644
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=4.1e-20 Score=189.63 Aligned_cols=272 Identities=14% Similarity=0.080 Sum_probs=185.4
Q ss_pred cccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCC
Q 045938 231 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVAL 310 (681)
Q Consensus 231 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 310 (681)
.++++.|+++++ .++.++...+ ..+++|++|++++|......|..+..+++|++|++++|. ++.++...
T Consensus 51 ~~~l~~L~L~~n-~i~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~- 119 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEIKDGDF--------KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM- 119 (330)
T ss_dssp CTTCCEEECCSS-CCCCBCTTTT--------TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC-
T ss_pred CCCCeEEECCCC-cCCEeChhhh--------ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh-
Confidence 368888888887 5666655321 234888999998887755557788888999999998875 66666543
Q ss_pred CCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCccee
Q 045938 311 PSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGL 390 (681)
Q Consensus 311 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L 390 (681)
.++|++|++++|. +..++...+ ..+++|+.|+++++. ++..... +. .....++|++|
T Consensus 120 ~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~--~~------------------~~~~l~~L~~L 176 (330)
T 1xku_A 120 PKTLQELRVHENE-ITKVRKSVF-NGLNQMIVVELGTNP-LKSSGIE--NG------------------AFQGMKKLSYI 176 (330)
T ss_dssp CTTCCEEECCSSC-CCBBCHHHH-TTCTTCCEEECCSSC-CCGGGBC--TT------------------GGGGCTTCCEE
T ss_pred cccccEEECCCCc-ccccCHhHh-cCCccccEEECCCCc-CCccCcC--hh------------------hccCCCCcCEE
Confidence 3789999998887 555554433 678888888888753 3221100 00 01123458888
Q ss_pred eeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCccc
Q 045938 391 HISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQ 470 (681)
Q Consensus 391 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~ 470 (681)
+++++. ++. ++ ..++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 177 ~l~~n~-l~~-l~-------------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 177 RIADTN-ITT-IP-------------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp ECCSSC-CCS-CC-------------SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred ECCCCc-ccc-CC-------------ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC
Confidence 887743 333 11 112245999999988776666677888899999999998888777777888889
Q ss_pred ccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCc------ccCCcceeeecccCCCC--CccccCCCCCC
Q 045938 471 LQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLH------NLTSLQQLTIGEGGELP--SLEEDDGLPTN 542 (681)
Q Consensus 471 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~------~l~~L~~L~l~~~~~~~--~~~~~~~~~~~ 542 (681)
|++|++++|. +..+|..+..+++|++|++++|......+..+. ..++++.+++++|+... ..|..+..+++
T Consensus 242 L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 242 LRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320 (330)
T ss_dssp CCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred CCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc
Confidence 9999999886 457887788888899999998875443333332 23678888888887543 33455777777
Q ss_pred CceeeeecCc
Q 045938 543 LHRLEIIDNK 552 (681)
Q Consensus 543 L~~L~l~~~~ 552 (681)
++.+++++|+
T Consensus 321 l~~l~L~~N~ 330 (330)
T 1xku_A 321 RAAVQLGNYK 330 (330)
T ss_dssp GGGEEC----
T ss_pred eeEEEecccC
Confidence 8888777663
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=9.4e-22 Score=219.13 Aligned_cols=323 Identities=17% Similarity=0.145 Sum_probs=178.2
Q ss_pred CCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCC
Q 045938 203 IPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLP 282 (681)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~ 282 (681)
+++|++|++.+|............+...+++|++|+++++ .++.+.. ..+..+...+++|++|++++|.. ..++
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~----~~l~~~~~~~~~L~~L~L~~~~~-~~l~ 236 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISP----KDLETIARNCRSLVSVKVGDFEI-LELV 236 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCH----HHHHHHHHHCTTCCEEECSSCBG-GGGH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCH----HHHHHHHhhCCCCcEEeccCccH-HHHH
Confidence 4566666666653211100001223456777777777765 3332222 22333334557788888877665 4455
Q ss_pred CCCCCCCCcceEEEeCCCCce----eecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCcccccccc
Q 045938 283 QSPLSLSSLREIEIYGCSSLV----SFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQ 358 (681)
Q Consensus 283 ~~~~~l~~L~~L~L~~~~~l~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 358 (681)
..+..+++|++|+++.+.... .......+++|+.++++++. ...++..+ ..+++|+.|++++|. +.......
T Consensus 237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L~~L~Ls~~~-l~~~~~~~ 312 (592)
T 3ogk_B 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQIRKLDLLYAL-LETEDHCT 312 (592)
T ss_dssp HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGCCEEEETTCC-CCHHHHHH
T ss_pred HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHH--hhcCCCcEEecCCCc-CCHHHHHH
Confidence 566677778888776532211 11234456777777777643 33444443 566778888887765 33211100
Q ss_pred CCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcC--------
Q 045938 359 LPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWS-------- 430 (681)
Q Consensus 359 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~-------- 430 (681)
. ...+++|++|+++++ +.+ .+++.. ...++. |++|++++
T Consensus 313 ~---------------------~~~~~~L~~L~L~~~--~~~--------~~l~~~-~~~~~~-L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 313 L---------------------IQKCPNLEVLETRNV--IGD--------RGLEVL-AQYCKQ-LKRLRIERGADEQGME 359 (592)
T ss_dssp H---------------------HTTCTTCCEEEEEGG--GHH--------HHHHHH-HHHCTT-CCEEEEECCCCSSTTS
T ss_pred H---------------------HHhCcCCCEEeccCc--cCH--------HHHHHH-HHhCCC-CCEEEeecCccccccc
Confidence 0 011235677766631 211 111111 123344 88888874
Q ss_pred --CCCchh--HHHhcccCCCccEEEeecccCcccccCcCcC-cccccEEeecc---CCCceecC------CCCCCCCCcc
Q 045938 431 --CSELES--IAERLDNNTSLETISISECENLKILPSGLHN-LRQLQEIGIWE---CENLVSFP------QGGLPCAKLT 496 (681)
Q Consensus 431 --~~~~~~--~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~-l~~L~~L~l~~---~~~l~~l~------~~~~~~~~L~ 496 (681)
|..... +......+++|++|+++.+.+.+..+..++. +++|+.|++++ |..++..| ..+..+++|+
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 444332 2223455788888888766666554444443 77788888863 33343321 1133477888
Q ss_pred eEeeccccc--cccccccC-cccCCcceeeecccCCCC-CccccCCCCCCCceeeeecCcc--------cccCCcccEEE
Q 045938 497 RLEISYCKR--LQVLPKGL-HNLTSLQQLTIGEGGELP-SLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLT 564 (681)
Q Consensus 497 ~L~l~~~~~--l~~~~~~l-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~ 564 (681)
+|+++.|.. ....+..+ ..+++|++|++++|...+ .++..+..+++|++|++++|.. ...+++|++|+
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 888876542 22222222 347788888888877543 2344456778888888888874 22578888888
Q ss_pred Eecc
Q 045938 565 ISGC 568 (681)
Q Consensus 565 l~~~ 568 (681)
+++|
T Consensus 520 ls~n 523 (592)
T 3ogk_B 520 VQGY 523 (592)
T ss_dssp EESC
T ss_pred CcCC
Confidence 8887
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.7e-22 Score=225.09 Aligned_cols=390 Identities=12% Similarity=0.062 Sum_probs=240.0
Q ss_pred CCCCcceEeecccCCceeeeeccccccccccc-ccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc
Q 045938 202 RIPKLEELEINDMKEQTYIWKSHNELLQDICS-LKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK 280 (681)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 280 (681)
.+++|++|++.++..... ....+...+++ |++|++++|..++. ..+..+...+++|++|++++|.....
T Consensus 110 ~~~~L~~L~L~~~~i~~~---~~~~l~~~~~~~L~~L~L~~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~~~~~ 179 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDL---DLDRLAKARADDLETLKLDKCSGFTT-------DGLLSIVTHCRKIKTLLMEESSFSEK 179 (592)
T ss_dssp HCTTCCEEEEESCBCCHH---HHHHHHHHHGGGCCEEEEESCEEEEH-------HHHHHHHHHCTTCSEEECTTCEEECC
T ss_pred hCCCCCeEEeeccEecHH---HHHHHHHhccccCcEEECcCCCCcCH-------HHHHHHHhhCCCCCEEECccccccCc
Confidence 468899999998742211 11222223555 99999999864432 33444455679999999999875322
Q ss_pred ----CCCCCCCCCCcceEEEeCCCCce-----eecC-CCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCC
Q 045938 281 ----LPQSPLSLSSLREIEIYGCSSLV-----SFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNS 350 (681)
Q Consensus 281 ----l~~~~~~l~~L~~L~L~~~~~l~-----~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 350 (681)
++.....+++|++|++++|. +. .++. ...+++|++|++++|. +..++..+ ..+++|+.|.++.+..
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNE 255 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCC
T ss_pred chhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH--hhhhHHHhhccccccc
Confidence 22233467899999998776 33 1211 1237899999999876 55566544 6778899999876332
Q ss_pred ccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcC
Q 045938 351 LTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWS 430 (681)
Q Consensus 351 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~ 430 (681)
..... ... .....+++|+.+.++++.. ..++.. +..++. |++|++++
T Consensus 256 ~~~~~--~~~------------------~~l~~~~~L~~L~l~~~~~-------~~l~~~-----~~~~~~-L~~L~Ls~ 302 (592)
T 3ogk_B 256 DIGMP--EKY------------------MNLVFPRKLCRLGLSYMGP-------NEMPIL-----FPFAAQ-IRKLDLLY 302 (592)
T ss_dssp CTTCT--TSS------------------SCCCCCTTCCEEEETTCCT-------TTGGGG-----GGGGGG-CCEEEETT
T ss_pred ccchH--HHH------------------HHhhccccccccCccccch-------hHHHHH-----HhhcCC-CcEEecCC
Confidence 21110 000 0111234578887776311 111111 223444 99999999
Q ss_pred CCCchhHH-HhcccCCCccEEEeecccCcccccCcCcCcccccEEeecc----------CCCcee--cCCCCCCCCCcce
Q 045938 431 CSELESIA-ERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWE----------CENLVS--FPQGGLPCAKLTR 497 (681)
Q Consensus 431 ~~~~~~~~-~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~l~~--l~~~~~~~~~L~~ 497 (681)
|....... ..+..+++|++|+++++-....++....++++|++|++++ |..++. +......+++|++
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 98554433 4468899999999994433333444446688999999994 554432 2222334789999
Q ss_pred EeeccccccccccccCcc-cCCcceeeecc---cCCCCC------ccccCCCCCCCceeeeecCcc---------c-ccC
Q 045938 498 LEISYCKRLQVLPKGLHN-LTSLQQLTIGE---GGELPS------LEEDDGLPTNLHRLEIIDNKK---------I-WKF 557 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~-l~~L~~L~l~~---~~~~~~------~~~~~~~~~~L~~L~l~~~~~---------~-~~l 557 (681)
|+++.+......+..+.. +++|+.|++++ |..++. ++..+..+++|++|+++.|.. + ..+
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~ 462 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence 999766655544455544 88999999974 333443 233355689999999986652 1 258
Q ss_pred CcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCccc--ccccccCCCCCCEEeecCCCCCcccCCC--
Q 045938 558 SSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLER--LSSSIVDLQNLTHLELEDCPKLKYFPEK-- 633 (681)
Q Consensus 558 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~l~~~-- 633 (681)
++|++|++++|......++... ...++|+.|++++|+ +.. ++..+..+++|++|++++|+ +......
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l 533 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLM 533 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGG
T ss_pred ccceEeeccCCCCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHH
Confidence 8999999998732211222221 345789999999986 542 44455678999999999996 4433211
Q ss_pred -CCcccccEEEeCCc
Q 045938 634 -GLPSSLLQLYIGGC 647 (681)
Q Consensus 634 -~~~~~L~~L~i~~c 647 (681)
..+|.+....+...
T Consensus 534 ~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 534 QMARPYWNIELIPSR 548 (592)
T ss_dssp GGCCTTEEEEEECCC
T ss_pred HHhCCCcEEEEecCc
Confidence 12455555555543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.7e-20 Score=192.59 Aligned_cols=270 Identities=16% Similarity=0.084 Sum_probs=167.5
Q ss_pred ccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCC
Q 045938 232 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALP 311 (681)
Q Consensus 232 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 311 (681)
++|+.|+++++ .++.+++.. + ..+++|++|++++|......|..++.+++|++|++++|. ++.++....
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~----~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~- 122 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDD----F----KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP- 122 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTT----T----TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC-
T ss_pred CCCeEEECCCC-cCCccCHhH----h----hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc-
Confidence 45566666654 344443321 1 223666666666666544446667777778888877664 555554333
Q ss_pred CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceee
Q 045938 312 SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLH 391 (681)
Q Consensus 312 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 391 (681)
++|++|++++|. +..++...+ ..+++|+.|+++++ .++..... +..+ ...+|++|+
T Consensus 123 ~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~--~~~~-------------------~~l~L~~L~ 178 (332)
T 2ft3_A 123 SSLVELRIHDNR-IRKVPKGVF-SGLRNMNCIEMGGN-PLENSGFE--PGAF-------------------DGLKLNYLR 178 (332)
T ss_dssp TTCCEEECCSSC-CCCCCSGGG-SSCSSCCEEECCSC-CCBGGGSC--TTSS-------------------CSCCCSCCB
T ss_pred ccCCEEECCCCc-cCccCHhHh-CCCccCCEEECCCC-ccccCCCC--cccc-------------------cCCccCEEE
Confidence 778888887776 555554433 66778888888764 33221100 0000 000367777
Q ss_pred eccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccc
Q 045938 392 ISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQL 471 (681)
Q Consensus 392 l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L 471 (681)
++++. ++. ++ ..++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 179 l~~n~-l~~-l~-------------~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 179 ISEAK-LTG-IP-------------KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp CCSSB-CSS-CC-------------SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred CcCCC-CCc-cC-------------ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 76642 222 11 1122358888888887666555678888888888888888877767778888888
Q ss_pred cEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcc------cCCcceeeecccCCC--CCccccCCCCCCC
Q 045938 472 QEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHN------LTSLQQLTIGEGGEL--PSLEEDDGLPTNL 543 (681)
Q Consensus 472 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~------l~~L~~L~l~~~~~~--~~~~~~~~~~~~L 543 (681)
+.|++++|. +..+|..+..+++|++|++++|......+..+.. .++|+.|++++|+.. ...+..+..+++|
T Consensus 244 ~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L 322 (332)
T 2ft3_A 244 RELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322 (332)
T ss_dssp CEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred CEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchh
Confidence 888888876 4577777777888888888888754433333332 356888888888755 3445557777777
Q ss_pred ceeeeecCc
Q 045938 544 HRLEIIDNK 552 (681)
Q Consensus 544 ~~L~l~~~~ 552 (681)
+.+++++|+
T Consensus 323 ~~l~l~~n~ 331 (332)
T 2ft3_A 323 LAIQFGNYK 331 (332)
T ss_dssp TTEEC----
T ss_pred hhhhccccc
Confidence 777777664
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.1e-20 Score=193.00 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=167.6
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
.+++|++++|... .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.. ..+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECC
Confidence 4888888887654 66777788888888888888877 6777788888888888888764 4777777788888888888
Q ss_pred cccccccccccCcc---------cCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEe
Q 045938 502 YCKRLQVLPKGLHN---------LTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTIS 566 (681)
Q Consensus 502 ~~~~l~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~ 566 (681)
+|.....+|..+.. +++|++|++++|... .+|..++.+++|++|++++|.. +..+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 88877777776654 888888888888655 6777788888888888888876 4477888888888
Q ss_pred ccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC-CCcccccEEEeC
Q 045938 567 GCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIG 645 (681)
Q Consensus 567 ~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~ 645 (681)
+|. ....+|... ..+++|+.|++++|+.+..+|..+..+++|++|++++|+.++.+|.. +.+++|+.+++.
T Consensus 238 ~n~-~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 238 GCT-ALRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TCT-TCCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCc-chhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 853 444555544 46778899999988888888888888999999999999888888874 557888888877
Q ss_pred C
Q 045938 646 G 646 (681)
Q Consensus 646 ~ 646 (681)
.
T Consensus 310 ~ 310 (328)
T 4fcg_A 310 P 310 (328)
T ss_dssp G
T ss_pred H
Confidence 5
No 50
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=3.8e-23 Score=230.55 Aligned_cols=148 Identities=12% Similarity=0.108 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcc-cCCCccEEEee-----cccCccc------ccCcCcCcccccEEeeccCCCceecC
Q 045938 419 LPPSLKSLDVWSCSELESIAERLD-NNTSLETISIS-----ECENLKI------LPSGLHNLRQLQEIGIWECENLVSFP 486 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~ls-----~~~~~~~------~~~~l~~l~~L~~L~l~~~~~l~~l~ 486 (681)
+|. |++|.+..+.........+. .+++|++|+++ +|..... ++..+.++++|+.|+++++-.-..++
T Consensus 371 ~~~-L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~ 449 (594)
T 2p1m_B 371 CPK-LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFE 449 (594)
T ss_dssp CTT-CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred chh-HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHH
Confidence 344 78887766655555444444 57788888887 2233321 11124556777777776521111111
Q ss_pred CCCCCCCCcceEeeccccccccccccC-cccCCcceeeecccCCCCCcc-ccCCCCCCCceeeeecCcc-------c-cc
Q 045938 487 QGGLPCAKLTRLEISYCKRLQVLPKGL-HNLTSLQQLTIGEGGELPSLE-EDDGLPTNLHRLEIIDNKK-------I-WK 556 (681)
Q Consensus 487 ~~~~~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~-------~-~~ 556 (681)
.....+++|+.|++++|......+..+ ..+++|++|++++|...+... ..+..+++|++|++++|.. + ..
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 529 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK 529 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence 111125677888887776543333223 457777888887777532222 2234466777777777765 1 24
Q ss_pred CCcccEEEEec
Q 045938 557 FSSLRQLTISG 567 (681)
Q Consensus 557 l~~L~~L~l~~ 567 (681)
+|+|+...+..
T Consensus 530 lp~l~i~~~~~ 540 (594)
T 2p1m_B 530 MPKLNVEVIDE 540 (594)
T ss_dssp CTTEEEEEECS
T ss_pred CCCCEEEEecC
Confidence 56665555544
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=8.6e-21 Score=192.75 Aligned_cols=224 Identities=14% Similarity=0.119 Sum_probs=142.1
Q ss_pred CCccEEeeeC-CcCcccCCCCCCCCCCcceEEEeCCCCceeecC-CCCCCCceEEEEecCCCCCccccccccCCCCccce
Q 045938 265 CILEYIDLRD-CQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEI 342 (681)
Q Consensus 265 ~~L~~L~l~~-~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 342 (681)
++|++|++++ +...+.+|..++++++|++|++++|.....+|. ...+++|++|++++|.....+|..+ ..+++|++
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~ 153 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVG 153 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH--hcCCCCCe
Confidence 5566666663 444445555566666666666665542223332 3345566666666655332444443 45556666
Q ss_pred eeeccCCCcc-ccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938 343 LEIWICNSLT-YIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP 421 (681)
Q Consensus 343 L~l~~c~~l~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 421 (681)
|+++++. ++ .++ .. +..+++
T Consensus 154 L~L~~N~-l~~~~p-----------------------------------------------------~~-----l~~l~~ 174 (313)
T 1ogq_A 154 ITFDGNR-ISGAIP-----------------------------------------------------DS-----YGSFSK 174 (313)
T ss_dssp EECCSSC-CEEECC-----------------------------------------------------GG-----GGCCCT
T ss_pred EECcCCc-ccCcCC-----------------------------------------------------HH-----Hhhhhh
Confidence 6665531 11 111 00 334443
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
.|++|++++|...+.+|..+..++ |++|++++|.+.+..|..++.+++|+.|++++|.....++. +..+++|++|+++
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECC
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECc
Confidence 478888887776666666777776 88888888887777777777888888888887764434443 5667788888888
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 552 (681)
+|.....+|..+..+++|++|++++|...+.+|. .+.+++|+.+++++|+
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred CCcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcCCC
Confidence 8877667777788888888888888877666766 3667777777777765
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=2.3e-22 Score=216.78 Aligned_cols=220 Identities=18% Similarity=0.099 Sum_probs=109.7
Q ss_pred CcEEEEcCCCCchhHHHhcc-----cCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCCCcee----c-CCC
Q 045938 423 LKSLDVWSCSELESIAERLD-----NNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECENLVS----F-PQG 488 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~----l-~~~ 488 (681)
|++|++++|...+..+..+. ..++|++|++++|.+... ++..+..+++|++|++++|..... + +..
T Consensus 172 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHH
Confidence 55555555544333222222 234555566555555432 233444455566666655542111 1 111
Q ss_pred CCCCCCcceEeecccccccc----ccccCcccCCcceeeecccCCCCCcc----ccC-CCCCCCceeeeecCcc------
Q 045938 489 GLPCAKLTRLEISYCKRLQV----LPKGLHNLTSLQQLTIGEGGELPSLE----EDD-GLPTNLHRLEIIDNKK------ 553 (681)
Q Consensus 489 ~~~~~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~-~~~~~L~~L~l~~~~~------ 553 (681)
...+++|++|++++|..... ++..+..+++|++|++++|......+ ..+ ...++|++|++++|..
T Consensus 252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 331 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH
Confidence 12345566666666543322 34444455666666666654322111 111 1224566666666654
Q ss_pred -----cccCCcccEEEEeccCCCCcCCCccccccccCC-CcccccceeEecccCCcc-----cccccccCCCCCCEEeec
Q 045938 554 -----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTL-PLPACLASLMIGNFPNLE-----RLSSSIVDLQNLTHLELE 622 (681)
Q Consensus 554 -----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~-~~~~~L~~l~l~~~~~l~-----~l~~~~~~~~~L~~L~l~ 622 (681)
+..+++|++|++++| .+........ ...+ ...++|++|++++| .+. .++..+..+++|++|+++
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l--~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNN--RLEDAGVREL--CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSS--BCHHHHHHHH--HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred HHHHHHhhCCCccEEEccCC--ccccccHHHH--HHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECC
Confidence 124567777777765 2322111000 0000 01457777777776 555 677778889999999999
Q ss_pred CCCCCcccCCC-------CCcccccEEEeCCch
Q 045938 623 DCPKLKYFPEK-------GLPSSLLQLYIGGCP 648 (681)
Q Consensus 623 ~c~~l~~l~~~-------~~~~~L~~L~i~~c~ 648 (681)
+|+ +...... ....+|+.|++.++.
T Consensus 407 ~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 407 NNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp SSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred CCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 984 4432110 123457777776653
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1e-21 Score=218.97 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=30.4
Q ss_pred ccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCC
Q 045938 230 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGC 299 (681)
Q Consensus 230 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~ 299 (681)
.+++|+.|++++|. ..+.. ..+..+...+++|++|++++|..+..++..+..+++|++|++..+
T Consensus 182 ~~~~L~~L~l~~~~--~~~~~----~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 182 TYTSLVSLNISCLA--SEVSF----SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TCCCCCEEECTTCC--SCCCH----HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred cCCcCcEEEecccC--CcCCH----HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 45556666665553 11111 122222233455666666655444444444445555666655544
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=8.5e-20 Score=189.14 Aligned_cols=203 Identities=18% Similarity=0.167 Sum_probs=116.4
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccccc-CcCcCcccccEEeeccCCCceecC-CCCCCCCCcceEee
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP-SGLHNLRQLQEIGIWECENLVSFP-QGGLPCAKLTRLEI 500 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l 500 (681)
|++|++++|...+..+..+.++++|++|++++|.+....+ ..+.++++|++|++++|..+..++ ..+..+++|++|++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 6666666665544333346666667777766666554322 345666666666666664344442 34455666666666
Q ss_pred ccccccccccccCcccCCcceeeecccCCCCCcccc-CCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccc
Q 045938 501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEED-DGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPED 579 (681)
Q Consensus 501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~ 579 (681)
++|......|..+..+++|++|++++|.. +.++.. ++ .+++|++|++++| .+..++...
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~-----------------~~~~L~~L~L~~n--~l~~~~~~~ 241 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVD-----------------VTSSVECLELRDT--DLDTFHFSE 241 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHH-----------------HTTTEEEEEEESC--BCTTCCCC-
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhh-----------------hcccccEEECCCC--ccccccccc
Confidence 66665444455566666666666666553 222221 22 3455555555554 233322211
Q ss_pred cccccCCCcccccceeEeccc----CCcccccccccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCchh
Q 045938 580 IRLRTTLPLPACLASLMIGNF----PNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCPL 649 (681)
Q Consensus 580 ~~~~~~~~~~~~L~~l~l~~~----~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~ 649 (681)
.. .......++.+++.++ ..+..+|..+..+++|++|++++| .++.+|.. ..+++|++|++++|+.
T Consensus 242 l~---~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 242 LS---TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp --------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cc---cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 00 0112334444545443 133457778888999999999998 67788875 3578999999999863
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=6.1e-19 Score=189.10 Aligned_cols=219 Identities=18% Similarity=0.202 Sum_probs=167.8
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 497 (681)
+|+++++|++++|.+....+..+.++++|++|++++|.+.+..+..+.++++|++|++++|. +..++. .+..+++|++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCE
Confidence 44568888888887766666778888888888888888887777788888888888888877 444554 3566888888
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccc-cCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCC
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE-DDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDD 571 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~ 571 (681)
|++++|......+..+..+++|+.|++++|..++.++. .+..+++|++|++++|.. +..+++|++|++++| .
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N--~ 229 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN--H 229 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS--C
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCC--c
Confidence 88888875544444677888888888888777766654 477788888888888876 457788999999887 5
Q ss_pred CcCCCccccccccCCCcccccceeEecccCCccccc-ccccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCch
Q 045938 572 MVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLS-SSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCP 648 (681)
Q Consensus 572 ~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 648 (681)
+..++...+ ..+++|+.|+++++ .+..++ ..+..+++|+.|++++| .++.++.. ..+++|++|++++||
T Consensus 230 l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 230 FPEIRPGSF------HGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSEECGGGG------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcccCcccc------cCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 666654433 56678899999886 566664 46788899999999998 67777764 347889999999887
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=5.2e-19 Score=179.34 Aligned_cols=227 Identities=17% Similarity=0.129 Sum_probs=151.8
Q ss_pred cCCccEEeeeCCcCcccCCCC-CCCCCCcceEEEeCCCCceee----cCCCCCCCceEEEEecCCCCCccccccccCCCC
Q 045938 264 SCILEYIDLRDCQDLVKLPQS-PLSLSSLREIEIYGCSSLVSF----PEVALPSKLKKIEIRECDALKSLPEAWMCDTNS 338 (681)
Q Consensus 264 ~~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~l~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 338 (681)
+++|++|++++|.. ..+|.. +.++++|++|++++|. +..+ .....+++|++|++++|. +..++..+ ..++
T Consensus 27 ~~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~--~~l~ 101 (306)
T 2z66_A 27 PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF--LGLE 101 (306)
T ss_dssp CTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE--ETCT
T ss_pred CCCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhc--CCCC
Confidence 36778888887766 455543 5778888888888765 4432 122235677777777765 44455443 4566
Q ss_pred ccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCC
Q 045938 339 SLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGN 418 (681)
Q Consensus 339 ~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 418 (681)
+|++|+++++ .++.++... .+..
T Consensus 102 ~L~~L~l~~n-~l~~~~~~~--------------------------------------------------------~~~~ 124 (306)
T 2z66_A 102 QLEHLDFQHS-NLKQMSEFS--------------------------------------------------------VFLS 124 (306)
T ss_dssp TCCEEECTTS-EEESSTTTT--------------------------------------------------------TTTT
T ss_pred CCCEEECCCC-cccccccch--------------------------------------------------------hhhh
Confidence 6666666653 222111000 0333
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcc-cccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLK-ILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~-~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 497 (681)
++. |++|++++|......+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|......+..+..+++|++
T Consensus 125 l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 125 LRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp CTT-CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccC-CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 444 8888888887666666667888888888888888766 56777888888888888888755444666777888888
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCC-CCCceeeeecCcc
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLP-TNLHRLEIIDNKK 553 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 553 (681)
|++++|......+..+..+++|+.|++++|...+..+..+..+ ++|++|++++|..
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 8888887655444467778888888888888777666666665 3677777776654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=9.6e-19 Score=186.85 Aligned_cols=220 Identities=17% Similarity=0.213 Sum_probs=163.5
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 497 (681)
+|.+++.|++++|.+....+..+.++++|++|++++|.+....+..+.++++|++|++++|. +..++. .+..+++|++
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCce
Confidence 34458888888887666556677888888888888888777666777788888888888876 444544 4667788888
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccc-cCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCC
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE-DDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDD 571 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~ 571 (681)
|++++|......+..+..+++|++|++++|..++.++. .+..+++|++|++++|.. +..+++|++|++++| .
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N--~ 218 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN--H 218 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS--C
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC--c
Confidence 88888875544444677788888888888766666554 477788888888888876 457788888888887 5
Q ss_pred CcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCch
Q 045938 572 MVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCP 648 (681)
Q Consensus 572 ~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 648 (681)
+..++...+ ..+++|+.|+++++ .+..++. .+..+++|+.|++++| .++.++.. ..+++|++|++++||
T Consensus 219 l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 219 LSAIRPGSF------QGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEECTTTT------TTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccChhhh------ccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 665544332 46678888888885 6666654 6778899999999997 67777764 347889999999887
Q ss_pred h
Q 045938 649 L 649 (681)
Q Consensus 649 ~ 649 (681)
.
T Consensus 291 ~ 291 (440)
T 3zyj_A 291 W 291 (440)
T ss_dssp E
T ss_pred c
Confidence 4
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=183.85 Aligned_cols=282 Identities=13% Similarity=0.113 Sum_probs=175.0
Q ss_pred cccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--C
Q 045938 231 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--V 308 (681)
Q Consensus 231 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~ 308 (681)
++.....+.++. .++++|.. .+++|++|++++|......+..+.++++|++|++++|. ++.++. .
T Consensus 30 C~~~~~c~~~~~-~l~~iP~~-----------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPSG-----------LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSF 96 (353)
T ss_dssp ECTTSEEECCST-TCSSCCTT-----------CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred CCCCeEeeCCCC-Cccccccc-----------ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhc
Confidence 444444555543 56666653 23678888888877633333367788888888888775 666543 4
Q ss_pred CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcc
Q 045938 309 ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLE 388 (681)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~ 388 (681)
..+++|++|++++|. +..++...+ ..+++|++|+++++ .++.++...... ..++|+
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~~~---------------------~l~~L~ 152 (353)
T 2z80_A 97 SSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLTFLNLLGN-PYKTLGETSLFS---------------------HLTKLQ 152 (353)
T ss_dssp TTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCSEEECTTC-CCSSSCSSCSCT---------------------TCTTCC
T ss_pred CCCCCCCEEECCCCc-CCcCCHhHh-CCCccCCEEECCCC-CCcccCchhhhc---------------------cCCCCc
Confidence 557888888888876 556665432 67788888888774 454444311111 123577
Q ss_pred eeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCc
Q 045938 389 GLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNL 468 (681)
Q Consensus 389 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l 468 (681)
+|+++++..++.+ +... +..++. |++|++++|...+..+..+..+++|++|++++|.+.......+..+
T Consensus 153 ~L~l~~n~~~~~~-~~~~---------~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 221 (353)
T 2z80_A 153 ILRVGNMDTFTKI-QRKD---------FAGLTF-LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221 (353)
T ss_dssp EEEEEESSSCCEE-CTTT---------TTTCCE-EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT
T ss_pred EEECCCCcccccc-CHHH---------ccCCCC-CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc
Confidence 7777776544441 1000 334444 8888888887666666777888888888888887654333334457
Q ss_pred ccccEEeeccCCCceecCCC---CCCCCCcceEeeccccccc----cccccCcccCCcceeeecccCCCCCcccc-CCCC
Q 045938 469 RQLQEIGIWECENLVSFPQG---GLPCAKLTRLEISYCKRLQ----VLPKGLHNLTSLQQLTIGEGGELPSLEED-DGLP 540 (681)
Q Consensus 469 ~~L~~L~l~~~~~l~~l~~~---~~~~~~L~~L~l~~~~~l~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~ 540 (681)
++|+.|++++|......+.. ....+.++.++++++.... .+|..+..+++|++|++++|... .+|.. ++.+
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l 300 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL 300 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence 78888888877643211111 1234567777777765432 35666777888888888888755 45544 4677
Q ss_pred CCCceeeeecCcccccCCccc
Q 045938 541 TNLHRLEIIDNKKIWKFSSLR 561 (681)
Q Consensus 541 ~~L~~L~l~~~~~~~~l~~L~ 561 (681)
++|++|++++|.....++.++
T Consensus 301 ~~L~~L~L~~N~~~~~~~~l~ 321 (353)
T 2z80_A 301 TSLQKIWLHTNPWDCSCPRID 321 (353)
T ss_dssp TTCCEEECCSSCBCCCHHHHH
T ss_pred CCCCEEEeeCCCccCcCCCcH
Confidence 777777777776544444443
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.7e-21 Score=210.03 Aligned_cols=333 Identities=19% Similarity=0.174 Sum_probs=194.1
Q ss_pred CCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcc--
Q 045938 202 RIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLV-- 279 (681)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-- 279 (681)
.+++|++|++.+|......+......+..+++|++|+++++ .+.+.... .....+....++|++|++++|....
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~---~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVH---CVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHH---HHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHH---HHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 36788889888887432211122345677899999999987 34431111 1111121111279999999988642
Q ss_pred --cCCCCCCCCCCcceEEEeCCCCceeec-----C--CCCCCCceEEEEecCCCCCcc-----ccccccCCCCccceeee
Q 045938 280 --KLPQSPLSLSSLREIEIYGCSSLVSFP-----E--VALPSKLKKIEIRECDALKSL-----PEAWMCDTNSSLEILEI 345 (681)
Q Consensus 280 --~l~~~~~~l~~L~~L~L~~~~~l~~~~-----~--~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~~~L~~L~l 345 (681)
.++..+..+++|++|++++|. +++.. . ....++|++|++++|. +... +..+ ..+++|+.|++
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L~~L~L 177 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVL--RAKPDFKELTV 177 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH--HHCTTCCEEEC
T ss_pred HHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHH--hhCCCCCEEEC
Confidence 457778889999999999886 54321 1 1224579999999986 4332 2222 45788999999
Q ss_pred ccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcE
Q 045938 346 WICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKS 425 (681)
Q Consensus 346 ~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~ 425 (681)
++|. +.+.....+...+ ....++|++|++++|. ++. .....++.. +..++. |++
T Consensus 178 ~~n~-i~~~~~~~l~~~l-----------------~~~~~~L~~L~L~~n~-l~~-~~~~~l~~~-----l~~~~~-L~~ 231 (461)
T 1z7x_W 178 SNND-INEAGVRVLCQGL-----------------KDSPCQLEALKLESCG-VTS-DNCRDLCGI-----VASKAS-LRE 231 (461)
T ss_dssp CSSB-CHHHHHHHHHHHH-----------------HHSCCCCCEEECTTSC-CBT-THHHHHHHH-----HHHCTT-CCE
T ss_pred cCCC-cchHHHHHHHHHH-----------------hcCCCCceEEEccCCC-CcH-HHHHHHHHH-----HHhCCC-ccE
Confidence 8864 4432211110000 0011247777777752 222 000001111 223344 888
Q ss_pred EEEcCCCCchhHH-----HhcccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCCCcee----cCCCC-CC
Q 045938 426 LDVWSCSELESIA-----ERLDNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECENLVS----FPQGG-LP 491 (681)
Q Consensus 426 L~l~~~~~~~~~~-----~~l~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~----l~~~~-~~ 491 (681)
|++++|...+... .....+++|++|++++|.+... ++..+.++++|++|++++|..... +.... ..
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccC
Confidence 8888876544321 2223577888888888876653 455566677888888887763221 11111 12
Q ss_pred CCCcceEeecccccccc----ccccCcccCCcceeeecccCCCCCccccC----C-CCCCCceeeeecCcc---------
Q 045938 492 CAKLTRLEISYCKRLQV----LPKGLHNLTSLQQLTIGEGGELPSLEEDD----G-LPTNLHRLEIIDNKK--------- 553 (681)
Q Consensus 492 ~~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~--------- 553 (681)
.++|++|++++|..... ++..+..+++|++|++++|...+..+..+ . ..++|++|++++|..
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 35788888888775433 34455667888888888876443322212 2 256788888888875
Q ss_pred --cccCCcccEEEEecc
Q 045938 554 --IWKFSSLRQLTISGC 568 (681)
Q Consensus 554 --~~~l~~L~~L~l~~~ 568 (681)
+..+++|++|++++|
T Consensus 392 ~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHCCCCCEEECCSS
T ss_pred HHHHhCCCccEEECCCC
Confidence 225788888888887
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.3e-18 Score=176.34 Aligned_cols=221 Identities=17% Similarity=0.132 Sum_probs=153.3
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccc--ccCcCcCcccccEEeeccCCCceecCCCCCCCCCcc
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKI--LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT 496 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 496 (681)
+|+++++|++++|...+..+..+.++++|++|++++|.+... .+..+..+++|++|++++|. +..++..+..+++|+
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE 104 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCC
Confidence 344588888888765533233467788888888888776532 24445567788888888776 445666666777888
Q ss_pred eEeecccccccccc-ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEec
Q 045938 497 RLEISYCKRLQVLP-KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISG 567 (681)
Q Consensus 497 ~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~ 567 (681)
+|++++|......+ ..+..+++|++|++++|......+..++.+++|++|++++|.. +..+++|++|++++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 88888877543332 3567778888888888876666666677788888888887764 34677888888888
Q ss_pred cCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCC-C-CcccccEEEe
Q 045938 568 CDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEK-G-LPSSLLQLYI 644 (681)
Q Consensus 568 ~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~-~~~~L~~L~i 644 (681)
| .+..++...+ ..+++|++|+++++ .+..++. .+..+++|++|++++|......+.. . .+++|++|++
T Consensus 185 n--~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 185 C--QLEQLSPTAF------NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp S--CCCEECTTTT------TTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred C--CcCCcCHHHh------cCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 7 5555543322 45678888988886 6666665 6778899999999998433334432 2 2358999999
Q ss_pred CCchh
Q 045938 645 GGCPL 649 (681)
Q Consensus 645 ~~c~~ 649 (681)
++|+.
T Consensus 256 ~~N~~ 260 (306)
T 2z66_A 256 TQNDF 260 (306)
T ss_dssp TTCCE
T ss_pred cCCCe
Confidence 99864
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=7.2e-18 Score=180.73 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=71.4
Q ss_pred cEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--CCCCC
Q 045938 235 KRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--VALPS 312 (681)
Q Consensus 235 ~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~ 312 (681)
+.++..+. .++.+|.. .++++++|++++|......+..+.++++|++|++++|. +..++. ...++
T Consensus 57 ~~v~c~~~-~l~~iP~~-----------~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~ 123 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQG-----------IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLA 123 (452)
T ss_dssp CEEECCSS-CCSSCCSC-----------CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred cEEEECCC-CcCccCCC-----------CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcc
Confidence 34444442 55666543 34778888888888755567778888899999998875 666653 44578
Q ss_pred CceEEEEecCCCCCccccccccCCCCccceeeeccCCCcccc
Q 045938 313 KLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYI 354 (681)
Q Consensus 313 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 354 (681)
+|++|++++|. +..++...+ ..+++|+.|+++++ .++.+
T Consensus 124 ~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~ 162 (452)
T 3zyi_A 124 SLNTLELFDNW-LTVIPSGAF-EYLSKLRELWLRNN-PIESI 162 (452)
T ss_dssp TCCEEECCSSC-CSBCCTTTS-SSCTTCCEEECCSC-CCCEE
T ss_pred cCCEEECCCCc-CCccChhhh-cccCCCCEEECCCC-Cccee
Confidence 88888888876 666665433 67788888888774 34443
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=2.6e-19 Score=182.34 Aligned_cols=235 Identities=11% Similarity=0.074 Sum_probs=157.5
Q ss_pred hhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCC
Q 045938 259 QLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNS 338 (681)
Q Consensus 259 ~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 338 (681)
.+...+++|++|++++|......|..+..+++|++|++++|. +...+....+++|++|++++|. +..++ ..+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~------~~~ 99 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELL------VGP 99 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEE------ECT
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-ccccc------CCC
Confidence 333455788888888887644444567788888888888775 5544445566777777777765 33332 225
Q ss_pred ccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCC
Q 045938 339 SLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGN 418 (681)
Q Consensus 339 ~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 418 (681)
+|+.|+++++ .++.++ ...
T Consensus 100 ~L~~L~l~~n-~l~~~~------------------------------------------------------------~~~ 118 (317)
T 3o53_A 100 SIETLHAANN-NISRVS------------------------------------------------------------CSR 118 (317)
T ss_dssp TCCEEECCSS-CCSEEE------------------------------------------------------------ECC
T ss_pred CcCEEECCCC-ccCCcC------------------------------------------------------------ccc
Confidence 5666666553 222111 122
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcC-cCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGL-HNLRQLQEIGIWECENLVSFPQGGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 497 (681)
++. |++|++++|......+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|. +..++.. ..+++|++
T Consensus 119 ~~~-L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~l~~L~~ 195 (317)
T 3o53_A 119 GQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKT 195 (317)
T ss_dssp CSS-CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-CCCTTCCE
T ss_pred cCC-CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccc-cccccCCE
Confidence 333 8888888887766555677788888888888888877666655 467888999998887 4455443 34788999
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEec
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISG 567 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~ 567 (681)
|++++|.. ..+|..+..+++|++|++++|... .+|..+..+++|++|++++|.. +..+++|+.|++.+
T Consensus 196 L~Ls~N~l-~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 196 LDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EECCSSCC-CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EECCCCcC-CcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 99988874 456666888888999999888644 5666677777777777777765 22445555555543
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.6e-17 Score=182.74 Aligned_cols=260 Identities=27% Similarity=0.308 Sum_probs=143.0
Q ss_pred CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceee
Q 045938 265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILE 344 (681)
Q Consensus 265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 344 (681)
.++++|+++++.. ..+|..+. ++|++|++++|. ++.+|. .+++|++|++++|. +..+|. .+++|+.|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 4577777777665 56666554 678888887764 666665 56778888887776 555554 346777777
Q ss_pred eccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCc
Q 045938 345 IWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLK 424 (681)
Q Consensus 345 l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~ 424 (681)
+++| .++.++. . .++|++|+++++ +++. ++ ..+++|+
T Consensus 108 Ls~N-~l~~l~~--~------------------------l~~L~~L~L~~N-~l~~-lp--------------~~l~~L~ 144 (622)
T 3g06_A 108 IFSN-PLTHLPA--L------------------------PSGLCKLWIFGN-QLTS-LP--------------VLPPGLQ 144 (622)
T ss_dssp ECSC-CCCCCCC--C------------------------CTTCCEEECCSS-CCSC-CC--------------CCCTTCC
T ss_pred CcCC-cCCCCCC--C------------------------CCCcCEEECCCC-CCCc-CC--------------CCCCCCC
Confidence 7663 3433321 0 113455555442 2222 10 0112355
Q ss_pred EEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccc
Q 045938 425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCK 504 (681)
Q Consensus 425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 504 (681)
+|++++|...+ ++ ..+++|+.|++++|.+.. +| ..+++|+.|++++|. +..+|.. +++|+.|++++|.
T Consensus 145 ~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~ 212 (622)
T 3g06_A 145 ELSVSDNQLAS-LP---ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNR 212 (622)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC
T ss_pred EEECcCCcCCC-cC---CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCc
Confidence 66665554322 22 123455555555554443 22 223455555555544 2233321 2345555555544
Q ss_pred ccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccccc
Q 045938 505 RLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRT 584 (681)
Q Consensus 505 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~ 584 (681)
. ..+|.. +++|+.|++++|... .+| ..+++|+.|++++| .+..+|.
T Consensus 213 l-~~l~~~---~~~L~~L~Ls~N~L~-~lp--------------------~~l~~L~~L~Ls~N--~L~~lp~------- 258 (622)
T 3g06_A 213 L-TSLPAL---PSGLKELIVSGNRLT-SLP--------------------VLPSELKELMVSGN--RLTSLPM------- 258 (622)
T ss_dssp C-SSCCCC---CTTCCEEECCSSCCS-CCC--------------------CCCTTCCEEECCSS--CCSCCCC-------
T ss_pred c-cccCCC---CCCCCEEEccCCccC-cCC--------------------CCCCcCcEEECCCC--CCCcCCc-------
Confidence 2 233321 244555555544322 122 14566677777765 5555654
Q ss_pred CCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcc
Q 045938 585 TLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKY 629 (681)
Q Consensus 585 ~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 629 (681)
.+++|+.|+++++ .+..+|..+..+++|+.|++++|+....
T Consensus 259 ---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 259 ---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp ---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred ---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 4467888888885 7778888888888888888888865433
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1.2e-17 Score=178.40 Aligned_cols=244 Identities=16% Similarity=0.177 Sum_probs=140.6
Q ss_pred ccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec--CCCCC
Q 045938 234 LKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP--EVALP 311 (681)
Q Consensus 234 L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~ 311 (681)
.+.++..+ ..++.+|.. .+++++.|++++|......+..+.++++|++|++++|. +..++ ....+
T Consensus 45 ~~~v~c~~-~~l~~iP~~-----------~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l 111 (440)
T 3zyj_A 45 FSKVICVR-KNLREVPDG-----------ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGL 111 (440)
T ss_dssp SCEEECCS-CCCSSCCSC-----------CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTC
T ss_pred CCEEEeCC-CCcCcCCCC-----------CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCC
Confidence 34455444 256666654 34778888888887755555678888888888888775 66554 23457
Q ss_pred CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceee
Q 045938 312 SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLH 391 (681)
Q Consensus 312 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 391 (681)
++|++|++++|. +..++...+ ..+++|+.|+++++ .++.++...
T Consensus 112 ~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~i~~~~~~~--------------------------------- 155 (440)
T 3zyj_A 112 ANLNTLELFDNR-LTTIPNGAF-VYLSKLKELWLRNN-PIESIPSYA--------------------------------- 155 (440)
T ss_dssp SSCCEEECCSSC-CSSCCTTTS-CSCSSCCEEECCSC-CCCEECTTT---------------------------------
T ss_pred ccCCEEECCCCc-CCeeCHhHh-hccccCceeeCCCC-cccccCHHH---------------------------------
Confidence 888888888875 666655433 66778888888764 343332211
Q ss_pred eccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHH-hcccCCCccEEEeecccCcccccCcCcCccc
Q 045938 392 ISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAE-RLDNNTSLETISISECENLKILPSGLHNLRQ 470 (681)
Q Consensus 392 l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~ 470 (681)
+..++. |++|++++|.....++. .+.++++|++|++++|.+.. +| .+..+++
T Consensus 156 ------------------------~~~l~~-L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~ 208 (440)
T 3zyj_A 156 ------------------------FNRIPS-LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIK 208 (440)
T ss_dssp ------------------------TTTCTT-CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSS
T ss_pred ------------------------hhhCcc-cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcc
Confidence 222222 55555555444333322 34555555555555555442 22 3455566
Q ss_pred ccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeec
Q 045938 471 LQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIID 550 (681)
Q Consensus 471 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 550 (681)
|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 66666666553333344555556666666666654444444555666666666666654444444455556666666666
Q ss_pred Ccc
Q 045938 551 NKK 553 (681)
Q Consensus 551 ~~~ 553 (681)
|..
T Consensus 289 Np~ 291 (440)
T 3zyj_A 289 NPW 291 (440)
T ss_dssp SCE
T ss_pred CCc
Confidence 553
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=6.2e-18 Score=169.43 Aligned_cols=150 Identities=16% Similarity=0.158 Sum_probs=114.3
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceec-CCCCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSF-PQGGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~ 497 (681)
+|+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|..+..+ +..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3456999999998776655567888999999999999888777888888999999999988755555 556777889999
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC 568 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~ 568 (681)
|++++|......+..+..+++|++|++++|......+..++.+++|++|++++|.. +..+++|++|++++|
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 99999886665567788889999999998876655555567777777777777754 234555666666554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=2.2e-18 Score=175.40 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=96.0
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|++|++++|......+..+..+++|++|++++|.+.+..+ +..+++|++|++++|. +..++. .++|++|++++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~~L~l~~ 108 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAAN 108 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-cccccC----CCCcCEEECCC
Confidence 5555555554444444445555555555555555544332 4445555555555544 333331 24555555555
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------c-ccCCcccEEEEeccCCCCcC
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------I-WKFSSLRQLTISGCDDDMVS 574 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~-~~l~~L~~L~l~~~~~~~~~ 574 (681)
|......+. .+++|++|++++|...+..+..++.+++|++|++++|.+ + ..+++|++|++++| .+..
T Consensus 109 n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N--~l~~ 183 (317)
T 3o53_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN--FIYD 183 (317)
T ss_dssp SCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS--CCCE
T ss_pred CccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC--cCcc
Confidence 543222211 234455555555544433333344455555555555544 1 13455555555554 3333
Q ss_pred CCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC-CCcccccEEEeCCch
Q 045938 575 FPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCP 648 (681)
Q Consensus 575 l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 648 (681)
++.. ..+++|+.|+++++ .+..++..+..+++|++|++++| .++.+|.. ..+++|+.|++++|+
T Consensus 184 ~~~~--------~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 184 VKGQ--------VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EECC--------CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred cccc--------cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 3221 13445555555553 44555544555555555555554 44444442 234555555555554
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=9.6e-20 Score=185.08 Aligned_cols=214 Identities=17% Similarity=0.152 Sum_probs=164.0
Q ss_pred CcEEEEcCCCCch-hHHHhcc-------cCCCccEEEeecccCcccccCcC--cCcccccEEeeccCCCceecCCCCCCC
Q 045938 423 LKSLDVWSCSELE-SIAERLD-------NNTSLETISISECENLKILPSGL--HNLRQLQEIGIWECENLVSFPQGGLPC 492 (681)
Q Consensus 423 L~~L~l~~~~~~~-~~~~~l~-------~l~~L~~L~ls~~~~~~~~~~~l--~~l~~L~~L~l~~~~~l~~l~~~~~~~ 492 (681)
+++|++++|.... .++..+. ++++|++|++++|.+.+..|..+ +.+++|++|++++|... .+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chhHHHHHH
Confidence 6677777665522 2333333 78999999999999988778776 88999999999998744 345433333
Q ss_pred -----CCcceEeeccccccccccccCcccCCcceeeecccCCCCC--ccccC--CCCCCCceeeeecCccc---------
Q 045938 493 -----AKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS--LEEDD--GLPTNLHRLEIIDNKKI--------- 554 (681)
Q Consensus 493 -----~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~--------- 554 (681)
++|++|++++|......+..++.+++|++|++++|...+. ++..+ +.+++|++|++++|.+-
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 7999999999987666667888999999999999986654 23334 78899999999999862
Q ss_pred -ccCCcccEEEEeccCCCCcCCC-ccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC
Q 045938 555 -WKFSSLRQLTISGCDDDMVSFP-PEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE 632 (681)
Q Consensus 555 -~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 632 (681)
.++++|++|++++| .+...+ .... ..+++|+.|+++++ .++.+|..+. ++|++|++++| .++.+|.
T Consensus 224 ~~~l~~L~~L~Ls~N--~l~~~~~~~~~------~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 224 AAARVQLQGLDLSHN--SLRDAAGAPSC------DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp HHTTCCCSEEECTTS--CCCSSCCCSCC------CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC
T ss_pred HhcCCCCCEEECCCC--cCCcccchhhh------hhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh
Confidence 26689999999997 455543 2211 34689999999996 7888888766 89999999998 7888887
Q ss_pred CCCcccccEEEeCCchh
Q 045938 633 KGLPSSLLQLYIGGCPL 649 (681)
Q Consensus 633 ~~~~~~L~~L~i~~c~~ 649 (681)
...+++|++|++++|+.
T Consensus 292 ~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TTTSCEEEEEECTTCTT
T ss_pred HhhCCCCCEEeccCCCC
Confidence 66689999999999874
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=6.4e-18 Score=182.15 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=161.7
Q ss_pred HHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccC
Q 045938 256 QQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCD 335 (681)
Q Consensus 256 ~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 335 (681)
.+..+...+++|++|++++|......|..+..+++|++|++++|. +...+....+++|++|++++|. +..++.
T Consensus 25 ~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~----- 97 (487)
T 3oja_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV----- 97 (487)
T ss_dssp HHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEE-----
T ss_pred HHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCC-----
Confidence 344454556789999999988755556678899999999999876 5554446677888888888875 443332
Q ss_pred CCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcc
Q 045938 336 TNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLE 415 (681)
Q Consensus 336 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 415 (681)
.++|+.|++++| .+..++
T Consensus 98 -~~~L~~L~L~~N-~l~~~~------------------------------------------------------------ 115 (487)
T 3oja_A 98 -GPSIETLHAANN-NISRVS------------------------------------------------------------ 115 (487)
T ss_dssp -CTTCCEEECCSS-CCCCEE------------------------------------------------------------
T ss_pred -CCCcCEEECcCC-cCCCCC------------------------------------------------------------
Confidence 256666666653 221111
Q ss_pred cCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCc-CcccccEEeeccCCCceecCCCCCCCCC
Q 045938 416 VGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLH-NLRQLQEIGIWECENLVSFPQGGLPCAK 494 (681)
Q Consensus 416 ~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 494 (681)
...++ +|++|++++|...+..+..++.+++|++|++++|.+.+..|..+. .+++|+.|++++|.. ..++. ...+++
T Consensus 116 ~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~~-~~~l~~ 192 (487)
T 3oja_A 116 CSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKG-QVVFAK 192 (487)
T ss_dssp ECCCS-SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEEC-CCCCTT
T ss_pred ccccC-CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-ccccc-cccCCC
Confidence 12233 388888888877776677788889999999999988887777765 688999999998874 44544 335788
Q ss_pred cceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938 495 LTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 495 L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 553 (681)
|+.|++++|.. ..+|..+..+++|+.|++++|... .+|..++.+++|+.|++++|..
T Consensus 193 L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 193 LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCEEECCSSCC-CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred CCEEECCCCCC-CCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence 99999999875 456666888899999999998755 4666677777788888877765
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=4.5e-18 Score=183.34 Aligned_cols=207 Identities=15% Similarity=0.132 Sum_probs=139.8
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
+|++|++++|.+....+..+..+++|++|++++|.+.+..| ++.+++|++|++++|. +..++. .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECc
Confidence 47777777776666555667777777777777777765544 6677777777777765 444443 2577777777
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cc-cCCcccEEEEeccCCCCc
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IW-KFSSLRQLTISGCDDDMV 573 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~-~l~~L~~L~l~~~~~~~~ 573 (681)
+|......+. .+++|+.|++++|...+..+..++.+++|++|++++|.+ +. .+++|++|++++| .+.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N--~l~ 182 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN--FIY 182 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS--CCC
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC--ccc
Confidence 7765443332 356777777777776666565667777777777777765 22 5677777777776 454
Q ss_pred CCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC-CCcccccEEEeCCchhH
Q 045938 574 SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLI 650 (681)
Q Consensus 574 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l 650 (681)
.++.. ..+++|+.|+++++ .+..+|..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|+..
T Consensus 183 ~~~~~--------~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DVKGQ--------VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECC--------CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccc--------ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 44432 24677777777775 67777777777778888888776 56666653 44677778888777644
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=3.4e-17 Score=164.07 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=87.2
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeec
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~ 501 (681)
|++|++++|...+..+..+..+++|++|++++|.+....+..++.+++|++|++++|. +..++. .+..+++|++|+++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECC
Confidence 6666666665554445556667777777777777666555556777777777777775 334444 35667777888887
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 553 (681)
+|......|..+..+++|+.|++++|...+..+..+..+++|++|++++|..
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 7776555566777777888888877766554444466667777777766654
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.6e-16 Score=174.76 Aligned_cols=256 Identities=22% Similarity=0.198 Sum_probs=199.8
Q ss_pred ccccceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCC
Q 045938 6 KNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPC 85 (681)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 85 (681)
.++++|++++++...+|..+. ++|++|++++| .++.+|. .+++|++|+++++. +..++. .+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV---------LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC---------CCTT
T ss_pred CCCcEEEecCCCcCccChhhC----CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC---------CCCC
Confidence 368899999999999998754 68999999997 6788887 67899999999997 877775 2899
Q ss_pred cceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCCCCCCCccEEEEccCCCceeecCCCCcccEEEECC
Q 045938 86 LETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGG 165 (681)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~ 165 (681)
|++|+++++ .+..+. ..+++|+.|+++++ +++ .+|..+++|++|++++|... ..-..+++|+.|++++
T Consensus 103 L~~L~Ls~N-~l~~l~--------~~l~~L~~L~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~ 170 (622)
T 3g06_A 103 LLELSIFSN-PLTHLP--------ALPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYN 170 (622)
T ss_dssp CCEEEECSC-CCCCCC--------CCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCS
T ss_pred CCEEECcCC-cCCCCC--------CCCCCcCEEECCCC-CCC-cCCCCCCCCCEEECcCCcCC-CcCCccCCCCEEECCC
Confidence 999999875 233321 14789999999985 566 67888899999999988532 2223467899999998
Q ss_pred CCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCc
Q 045938 166 CKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKL 245 (681)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 245 (681)
|....++ ..+++|+.|.+.++..... -..+++|+.|++++| .+
T Consensus 171 N~l~~l~----------------------------~~~~~L~~L~Ls~N~l~~l--------~~~~~~L~~L~L~~N-~l 213 (622)
T 3g06_A 171 NQLTSLP----------------------------MLPSGLQELSVSDNQLASL--------PTLPSELYKLWAYNN-RL 213 (622)
T ss_dssp SCCSCCC----------------------------CCCTTCCEEECCSSCCSCC--------CCCCTTCCEEECCSS-CC
T ss_pred CCCCCCc----------------------------ccCCCCcEEECCCCCCCCC--------CCccchhhEEECcCC-cc
Confidence 8754432 2468899999988753221 124589999999987 66
Q ss_pred cccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCC
Q 045938 246 QSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDAL 325 (681)
Q Consensus 246 ~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l 325 (681)
+.++.. +++|++|++++|.. ..+| ..+++|++|++++|. ++.+|. .+++|++|++++|. +
T Consensus 214 ~~l~~~------------~~~L~~L~Ls~N~L-~~lp---~~l~~L~~L~Ls~N~-L~~lp~--~~~~L~~L~Ls~N~-L 273 (622)
T 3g06_A 214 TSLPAL------------PSGLKELIVSGNRL-TSLP---VLPSELKELMVSGNR-LTSLPM--LPSGLLSLSVYRNQ-L 273 (622)
T ss_dssp SSCCCC------------CTTCCEEECCSSCC-SCCC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-C
T ss_pred cccCCC------------CCCCCEEEccCCcc-CcCC---CCCCcCcEEECCCCC-CCcCCc--ccccCcEEeCCCCC-C
Confidence 666532 38899999999866 5677 467899999999885 778877 67899999999986 7
Q ss_pred CccccccccCCCCccceeeeccCC
Q 045938 326 KSLPEAWMCDTNSSLEILEIWICN 349 (681)
Q Consensus 326 ~~~~~~~~~~~~~~L~~L~l~~c~ 349 (681)
..+|..+ ..+++|+.|++++++
T Consensus 274 ~~lp~~l--~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 274 TRLPESL--IHLSSETTVNLEGNP 295 (622)
T ss_dssp CSCCGGG--GGSCTTCEEECCSCC
T ss_pred CcCCHHH--hhccccCEEEecCCC
Confidence 7888776 789999999999864
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=4.2e-17 Score=158.74 Aligned_cols=202 Identities=16% Similarity=0.136 Sum_probs=135.1
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeeccc-CcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcc
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECE-NLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLT 496 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~-~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~ 496 (681)
+|.++++|++++|...+..+..+.++++|++|++++|. +....+..+.++++|++|++++|..+..++. .+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 45568888888886655444567778888888888886 5444445677777888888877333445553 445677777
Q ss_pred eEeeccccccccccccCcccCCcc---eeeecccCCCCCccc-cCCCCCCCceeeeecCcccccCCccc-EEEEeccCCC
Q 045938 497 RLEISYCKRLQVLPKGLHNLTSLQ---QLTIGEGGELPSLEE-DDGLPTNLHRLEIIDNKKIWKFSSLR-QLTISGCDDD 571 (681)
Q Consensus 497 ~L~l~~~~~l~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~L~-~L~l~~~~~~ 571 (681)
+|++++|.. ..+|. +..+++|+ +|++++|..+..+++ .+. ++++|+ +|++++| .
T Consensus 109 ~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~-----------------~l~~L~~~L~l~~n--~ 167 (239)
T 2xwt_C 109 FLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ-----------------GLCNETLTLKLYNN--G 167 (239)
T ss_dssp EEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT-----------------TTBSSEEEEECCSC--C
T ss_pred EEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCccccc-----------------chhcceeEEEcCCC--C
Confidence 887777764 34555 66666666 777777733333332 234 445555 6666555 4
Q ss_pred CcCCCccccccccCCCcccccceeEecccCCcccccc-cccCC-CCCCEEeecCCCCCcccCCCCCcccccEEEeCCchh
Q 045938 572 MVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDL-QNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL 649 (681)
Q Consensus 572 ~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 649 (681)
+..+|...+ ..++|+.|++++++.++.++. .+..+ ++|+.|++++| .++.+|.. .+++|+.|++++++.
T Consensus 168 l~~i~~~~~-------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 168 FTSVQGYAF-------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp CCEECTTTT-------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC--
T ss_pred CcccCHhhc-------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccC
Confidence 555665442 225788888888766888865 56778 99999999997 67888875 678999999999875
Q ss_pred H
Q 045938 650 I 650 (681)
Q Consensus 650 l 650 (681)
+
T Consensus 239 l 239 (239)
T 2xwt_C 239 L 239 (239)
T ss_dssp -
T ss_pred C
Confidence 3
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=4.7e-17 Score=162.19 Aligned_cols=197 Identities=19% Similarity=0.135 Sum_probs=144.1
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceE
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRL 498 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 498 (681)
+|+++++|++++|...+..+..+.++++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45569999999997766555578899999999999998887777788889999999999988554444567788999999
Q ss_pred eeccccccccccccCcccCCcceeeecccCCCC-CccccCCCCCCCceeeeecCcc-------cccCCccc----EEEEe
Q 045938 499 EISYCKRLQVLPKGLHNLTSLQQLTIGEGGELP-SLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLR----QLTIS 566 (681)
Q Consensus 499 ~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~----~L~l~ 566 (681)
++++|......+..++.+++|++|++++|.... .+|..++.+++|++|++++|.. +..+++|+ +|+++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 999988655555578889999999999998665 3577788888888888888875 22333444 67777
Q ss_pred ccCCCCcCCCccccccccCCCcccccceeEecccCCccccccc-ccCCCCCCEEeecCCC
Q 045938 567 GCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSS-IVDLQNLTHLELEDCP 625 (681)
Q Consensus 567 ~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~ 625 (681)
+| .+..++...+ ...+|+.|+++++ .++.++.. +..+++|++|++++|+
T Consensus 186 ~n--~l~~~~~~~~-------~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 186 LN--PMNFIQPGAF-------KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SS--CCCEECTTSS-------CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CC--cccccCcccc-------CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 76 4555554331 2235666777664 46666553 3566677777777663
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=2.4e-16 Score=157.79 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=92.9
Q ss_pred CCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938 421 PSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI 500 (681)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 500 (681)
++++.|++++|.+....+..+..+++|++|++++|.+....+. +.+++|++|++++|. +..+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEEC
Confidence 3466666666655544455566666666666666665543221 456666666666655 3355555555666666666
Q ss_pred ccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccc
Q 045938 501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDI 580 (681)
Q Consensus 501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~ 580 (681)
++|......+..+..+++|++|++++|......+..+..+++|+.|++++|+ +..+|...+
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-------------------l~~l~~~~~ 168 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-------------------LTELPAGLL 168 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-------------------CSCCCTTTT
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-------------------CCccCHHHh
Confidence 6665443333455566666666666665443333334444555555555444 333333221
Q ss_pred ccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCC
Q 045938 581 RLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCP 625 (681)
Q Consensus 581 ~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 625 (681)
..+++|+.|+++++ .++.+|..+...++|+.+++++|+
T Consensus 169 ------~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 169 ------NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ------TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ------cCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 22344444444442 444555555555555555555543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=3.1e-16 Score=156.22 Aligned_cols=194 Identities=18% Similarity=0.158 Sum_probs=158.3
Q ss_pred CCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeee
Q 045938 445 TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTI 524 (681)
Q Consensus 445 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 524 (681)
++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999998877778999999999999999744333446778999999999999876666678899999999999
Q ss_pred cccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccc---
Q 045938 525 GEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLA--- 593 (681)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~--- 593 (681)
++|......+..++.+++|++|++++|.. +.++++|++|++++| .+..++...+ ...++|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~l~ 179 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDL------RVLHQMPLLN 179 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS--CCCEECGGGG------HHHHTCTTCC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC--CCCcCCHHHh------hhhhhccccc
Confidence 99987766555689999999999999986 347899999999998 6666665432 2344555
Q ss_pred -eeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCch
Q 045938 594 -SLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCP 648 (681)
Q Consensus 594 -~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 648 (681)
+++++++ .+..++.......+|+.|++++| .++.+|.. ..+++|++|++++||
T Consensus 180 l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 180 LSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 7888885 78888887777779999999998 68888774 347999999999654
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=2.7e-16 Score=153.01 Aligned_cols=211 Identities=18% Similarity=0.175 Sum_probs=144.8
Q ss_pred cccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhH-HHhcccCCCccEE
Q 045938 372 GIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESI-AERLDNNTSLETI 450 (681)
Q Consensus 372 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L 450 (681)
|..+..++. ..+++++|+++++ +++. .+... +..++. |++|++++|...+.+ +..+.++++|++|
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n-~l~~-i~~~~---------~~~l~~-L~~L~l~~n~~l~~i~~~~f~~l~~L~~L 85 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIET-HLRT-IPSHA---------FSNLPN-ISRIYVSIDVTLQQLESHSFYNLSKVTHI 85 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESC-CCSE-ECTTT---------TTTCTT-CCEEEEECCSSCCEECTTTEESCTTCCEE
T ss_pred ccCccccCC--CCCcccEEEEeCC-cceE-ECHHH---------ccCCCC-CcEEeCCCCCCcceeCHhHcCCCcCCcEE
Confidence 444666766 3458999999984 4554 22111 445666 999999999734444 4578999999999
Q ss_pred Eeec-ccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcc---eEeeccccccccccc-cCcccCCcc-eeee
Q 045938 451 SISE-CENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT---RLEISYCKRLQVLPK-GLHNLTSLQ-QLTI 524 (681)
Q Consensus 451 ~ls~-~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~---~L~l~~~~~l~~~~~-~l~~l~~L~-~L~l 524 (681)
++++ |.+....+..+.++++|++|++++|. +..+|. +..+++|+ +|++++|..+..++. .+..+++|+ .|++
T Consensus 86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 9999 77776666788899999999999987 455776 77788888 999999934555554 588899999 9999
Q ss_pred cccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcc-cccceeEecccCCc
Q 045938 525 GEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLP-ACLASLMIGNFPNL 603 (681)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~-~~L~~l~l~~~~~l 603 (681)
++|... .++......++|++|++++|+ .+..++...+ ... ++|+.|+++++ .+
T Consensus 164 ~~n~l~-~i~~~~~~~~~L~~L~L~~n~------------------~l~~i~~~~~------~~l~~~L~~L~l~~N-~l 217 (239)
T 2xwt_C 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNK------------------YLTVIDKDAF------GGVYSGPSLLDVSQT-SV 217 (239)
T ss_dssp CSCCCC-EECTTTTTTCEEEEEECTTCT------------------TCCEECTTTT------TTCSBCCSEEECTTC-CC
T ss_pred CCCCCc-ccCHhhcCCCCCCEEEcCCCC------------------CcccCCHHHh------hccccCCcEEECCCC-cc
Confidence 999755 555432222555555555552 1333333221 233 55666666663 56
Q ss_pred ccccccccCCCCCCEEeecCCCC
Q 045938 604 ERLSSSIVDLQNLTHLELEDCPK 626 (681)
Q Consensus 604 ~~l~~~~~~~~~L~~L~l~~c~~ 626 (681)
+.+|.. .|++|+.|+++++..
T Consensus 218 ~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 218 TALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCCCT--TCTTCSEEECTTC--
T ss_pred ccCChh--HhccCceeeccCccC
Confidence 666654 677888888877643
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=161.21 Aligned_cols=217 Identities=14% Similarity=0.117 Sum_probs=162.2
Q ss_pred CcEEEEcCCCCchhHH---HhcccCCCccEEEeecccCcccccCcC--cCcccccEEeeccCCCceecC----CCCCCCC
Q 045938 423 LKSLDVWSCSELESIA---ERLDNNTSLETISISECENLKILPSGL--HNLRQLQEIGIWECENLVSFP----QGGLPCA 493 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~ls~~~~~~~~~~~l--~~l~~L~~L~l~~~~~l~~l~----~~~~~~~ 493 (681)
++.+.+.++....... .....+++|++|++++|.+.+..|..+ ..+++|++|++++|......+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 7788888876644321 123345779999999998888878777 888999999999887544322 1234578
Q ss_pred CcceEeeccccccccccccCcccCCcceeeecccCCCCC--cc--ccCCCCCCCceeeeecCcc----------cccCCc
Q 045938 494 KLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS--LE--EDDGLPTNLHRLEIIDNKK----------IWKFSS 559 (681)
Q Consensus 494 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~--~~~~~~~~L~~L~l~~~~~----------~~~l~~ 559 (681)
+|++|++++|......+..++.+++|++|++++|...+. ++ ..++.+++|++|++++|.. +.++++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ 225 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence 899999999987666667888899999999999976542 22 2236788999999999987 136689
Q ss_pred ccEEEEeccCCCCcCC-CccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCccc
Q 045938 560 LRQLTISGCDDDMVSF-PPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSS 638 (681)
Q Consensus 560 L~~L~l~~~~~~~~~l-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 638 (681)
|++|++++| .+..+ |.... ....+++|++|+++++ .++.+|..+. ++|++|++++| .++.+|....+++
T Consensus 226 L~~L~Ls~N--~l~~~~p~~~~----~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~ 295 (310)
T 4glp_A 226 PHSLDLSHN--SLRATVNPSAP----RCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPE 295 (310)
T ss_dssp CSSEECTTS--CCCCCCCSCCS----SCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCC
T ss_pred CCEEECCCC--CCCccchhhHH----hccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCC
Confidence 999999997 55554 44331 1122479999999986 7888888764 89999999998 7777776666899
Q ss_pred ccEEEeCCchh
Q 045938 639 LLQLYIGGCPL 649 (681)
Q Consensus 639 L~~L~i~~c~~ 649 (681)
|++|++++|+.
T Consensus 296 L~~L~L~~N~l 306 (310)
T 4glp_A 296 VDNLTLDGNPF 306 (310)
T ss_dssp CSCEECSSTTT
T ss_pred ccEEECcCCCC
Confidence 99999999874
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=8.9e-16 Score=152.25 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=105.1
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 497 (681)
+|+++++|++++|......+..+.++++|++|++++|.+....+..+.++++|++|++++|.. ..++. .+..+++|++
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAE 113 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCE
Confidence 344577777777765544444667777777777777776655455556677777777777663 33443 3455677777
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCc
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPP 577 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~ 577 (681)
|++++|......+..+..+++|++|++++|......+..++.+++| ++|++++| .+..++.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------------~~L~L~~n--~l~~~~~ 174 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-----------------KELRLYNN--QLKRVPE 174 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------CEEECCSS--CCSCCCT
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-----------------ceeEecCC--cCcEeCh
Confidence 7777776544444455667777777777775443333334444444 44444444 3333433
Q ss_pred cccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCC
Q 045938 578 EDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCP 625 (681)
Q Consensus 578 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 625 (681)
..+ ..+++|+.|+++++ .++.++. .+..+++|+.|++++|+
T Consensus 175 ~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 GAF------DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHh------ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 221 23345555555553 4555554 35566777777777764
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=6.5e-17 Score=164.12 Aligned_cols=189 Identities=20% Similarity=0.175 Sum_probs=115.7
Q ss_pred CcEEEEcCCCCchhHHHhc--ccCCCccEEEeecccCcccccCcCcCc-----ccccEEeeccCCCceecCCCCCCCCCc
Q 045938 423 LKSLDVWSCSELESIAERL--DNNTSLETISISECENLKILPSGLHNL-----RQLQEIGIWECENLVSFPQGGLPCAKL 495 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~ls~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~l~~l~~~~~~~~~L 495 (681)
|++|++++|...+.+|..+ ..+++|++|++++|.+.+. |..++.+ ++|++|++++|......+..+..+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 6666666665554454443 5566666666666665554 4444444 566666666665333233455556666
Q ss_pred ceEeecccccccc--ccccC--cccCCcceeeecccCCCC--Ccc-ccCCCCCCCceeeeecCcc--------cccCCcc
Q 045938 496 TRLEISYCKRLQV--LPKGL--HNLTSLQQLTIGEGGELP--SLE-EDDGLPTNLHRLEIIDNKK--------IWKFSSL 560 (681)
Q Consensus 496 ~~L~l~~~~~l~~--~~~~l--~~l~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~L~l~~~~~--------~~~l~~L 560 (681)
++|++++|..... ++..+ ..+++|++|++++|.... .++ ..+..+++|++|++++|.. ...+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 6666666654332 22222 556666666666665431 111 1223456666666666654 1135778
Q ss_pred cEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCC
Q 045938 561 RQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCP 625 (681)
Q Consensus 561 ~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 625 (681)
++|++++| .+..+|... +++|+.|+++++ .++.+|. +..+++|++|++++|+
T Consensus 256 ~~L~Ls~N--~l~~ip~~~---------~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 256 NSLNLSFT--GLKQVPKGL---------PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CEEECTTS--CCSSCCSSC---------CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CEEECCCC--ccChhhhhc---------cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 88888887 566777643 378999999985 7888876 8899999999999984
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.1e-15 Score=151.73 Aligned_cols=197 Identities=18% Similarity=0.196 Sum_probs=139.7
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCC-CCCCCCcceEee
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG-GLPCAKLTRLEI 500 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l 500 (681)
..+.++++++... .+|..+. +++++|++++|.+....+..+.++++|++|++++|. +..++.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence 3677777776543 4554333 578888888888776666678888888888888776 4455554 356778888888
Q ss_pred ccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccc
Q 045938 501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDI 580 (681)
Q Consensus 501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~ 580 (681)
++|......+..+..+++|++|++++|......+..++. +++|++|++++| .+..++...+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------l~~L~~L~Ls~n--~l~~~~~~~~ 153 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-----------------LTKLTYLSLGYN--ELQSLPKGVF 153 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-----------------CTTCCEEECCSS--CCCCCCTTTT
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-----------------CcCCCEEECCCC--cCCccCHhHc
Confidence 887754433445677788888888887755544443444 455555555555 4555665432
Q ss_pred ccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCchh
Q 045938 581 RLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCPL 649 (681)
Q Consensus 581 ~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~ 649 (681)
..+++|+.|+++++ .+..++. .+..+++|++|++++| .++.++.. ..+++|+.|++++||.
T Consensus 154 ------~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 154 ------DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 46789999999996 7888876 4788999999999998 77888774 3478999999999873
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=8.9e-16 Score=153.61 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=72.0
Q ss_pred ccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC
Q 045938 228 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE 307 (681)
Q Consensus 228 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~ 307 (681)
+..+++++.++++++ .++.+|.. .++++++|++++|......+..+..+++|++|++++|. ++.++.
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~-----------~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPD-----------LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV 72 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSC-----------CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC
T ss_pred ccccCCccEEECCCC-CCCcCCCC-----------CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC
Confidence 366778888888875 66776654 34678888888887755556677788888888888765 666666
Q ss_pred CCCCCCceEEEEecCCCCCccccccccCCCCccceeeecc
Q 045938 308 VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWI 347 (681)
Q Consensus 308 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 347 (681)
.+.+++|++|++++|. +..+|..+ ..+++|+.|++++
T Consensus 73 ~~~l~~L~~L~Ls~N~-l~~l~~~~--~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQ-LQSLPLLG--QTLPALTVLDVSF 109 (290)
T ss_dssp CSCCTTCCEEECCSSC-CSSCCCCT--TTCTTCCEEECCS
T ss_pred CCCCCcCCEEECCCCc-CCcCchhh--ccCCCCCEEECCC
Confidence 6677778888887765 55555443 4555555555554
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=1.2e-16 Score=158.58 Aligned_cols=145 Identities=18% Similarity=0.090 Sum_probs=84.3
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeec
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~ 501 (681)
|++|++++|...+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|. +..++. .+..+++|++|+++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECC
Confidence 5555555554433333334555666666666666555445555666666666666664 333333 23456667777777
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEecc
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGC 568 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~ 568 (681)
+|......+..++.+++|++|++++|...+..+..++.+++|++|++++|.....+++|+.|++..|
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 232 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHH
Confidence 7664433333456667777777777765554444456667777777776666556666666665554
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=8.6e-16 Score=152.52 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=36.6
Q ss_pred CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceee
Q 045938 265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILE 344 (681)
Q Consensus 265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 344 (681)
++|++|++++|.. ..++ .+..+++|++|++++|. +..++....+++|++|++++|. +..++...+ ..+++|+.|+
T Consensus 41 ~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQ-LQSLPNGVF-DKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCEEE
T ss_pred cceeeeeeCCCCc-cccc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCc-cCccChhHh-cCCcCCCEEE
Confidence 4455555555443 2332 24455555555555543 4444444445555555555554 333333221 3445555555
Q ss_pred ecc
Q 045938 345 IWI 347 (681)
Q Consensus 345 l~~ 347 (681)
+++
T Consensus 116 L~~ 118 (272)
T 3rfs_A 116 LVE 118 (272)
T ss_dssp CTT
T ss_pred CCC
Confidence 554
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.3e-14 Score=149.53 Aligned_cols=219 Identities=19% Similarity=0.127 Sum_probs=166.7
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccccc-CcCcCcccccEEeeccCCCceecC-CCCCCCCCcc
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP-SGLHNLRQLQEIGIWECENLVSFP-QGGLPCAKLT 496 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~ 496 (681)
+|.++++|++++|.+....+..+.++++|++|++++|.+.+.++ ..+.++++++.+...++..+..++ ..+..+++|+
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 45679999999987654334568999999999999999877655 456788888776555444466664 4567789999
Q ss_pred eEeeccccccccccccCcccCCcceeeecccCCCCCccc-cCCCC-CCCceeeeecCcc------cccCCcccEEEEecc
Q 045938 497 RLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE-DDGLP-TNLHRLEIIDNKK------IWKFSSLRQLTISGC 568 (681)
Q Consensus 497 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~------~~~l~~L~~L~l~~~ 568 (681)
+|++++|......+..+....++..+++.++..+..++. .+..+ ..++.|++++|++ ....++|++|++.+|
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence 999999885443333455667788899988766666654 34444 4688999999987 346678999999863
Q ss_pred CCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCc
Q 045938 569 DDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGC 647 (681)
Q Consensus 569 ~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c 647 (681)
..+..+|.+.+ ..+++|+.|+++++ +++.+|.. .|.+|+.|.+.+|+.++.+|....+++|+.+++.++
T Consensus 188 -n~l~~i~~~~f------~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 188 -NNLEELPNDVF------HGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp -TTCCCCCTTTT------TTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred -CcccCCCHHHh------ccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 37888887654 56789999999996 89999863 477899999999999999998777899999999753
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=2e-14 Score=148.23 Aligned_cols=156 Identities=19% Similarity=0.118 Sum_probs=81.9
Q ss_pred HHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCC-CCC-CCcceEeeccccccccccccCcc
Q 045938 438 AERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGG-LPC-AKLTRLEISYCKRLQVLPKGLHN 515 (681)
Q Consensus 438 ~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~-~~~-~~L~~L~l~~~~~l~~~~~~l~~ 515 (681)
+..+..+++|++|++++|.+....+..+....++..+++.++..+..++... ..+ ..++.|++++|. +..++.....
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~ 175 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFN 175 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSST
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhcc
Confidence 3345555556666665555544434344444555566665555555554422 222 246666666665 3445555555
Q ss_pred cCCcceeeecccCCCCCccc-cCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccce
Q 045938 516 LTSLQQLTIGEGGELPSLEE-DDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLAS 594 (681)
Q Consensus 516 l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~ 594 (681)
..+|+++.+.++..++.+|. .++.++ +|++|++++| .+..+|. ..+.+|++
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~-----------------~L~~LdLs~N--~l~~lp~---------~~~~~L~~ 227 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGAS-----------------GPVILDISRT--RIHSLPS---------YGLENLKK 227 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEE-----------------CCSEEECTTS--CCCCCCS---------SSCTTCCE
T ss_pred ccchhHHhhccCCcccCCCHHHhccCc-----------------ccchhhcCCC--CcCccCh---------hhhccchH
Confidence 55666666665555555543 233333 3333333333 3444444 23455666
Q ss_pred eEecccCCcccccccccCCCCCCEEeecC
Q 045938 595 LMIGNFPNLERLSSSIVDLQNLTHLELED 623 (681)
Q Consensus 595 l~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 623 (681)
|++.++.+++.+|. +..+++|+.+++.+
T Consensus 228 L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 228 LRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 66666666666663 56666777776654
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=9e-17 Score=165.19 Aligned_cols=213 Identities=13% Similarity=0.093 Sum_probs=143.3
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccc-ccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKI-LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI 500 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~-~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 500 (681)
.++.|+++++...+.. ..+..+++|++|++++|.+.+. ++..+.++++|++|++++|......+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccc-hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 3888888887655443 3466788888888888886654 6666778888888888888644445555566788888888
Q ss_pred ccccccc--cccccCcccCCcceeeecccCCCCC--ccccCCCCC-CCceeeeecCc--c--------cccCCcccEEEE
Q 045938 501 SYCKRLQ--VLPKGLHNLTSLQQLTIGEGGELPS--LEEDDGLPT-NLHRLEIIDNK--K--------IWKFSSLRQLTI 565 (681)
Q Consensus 501 ~~~~~l~--~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~-~L~~L~l~~~~--~--------~~~l~~L~~L~l 565 (681)
++|.... .++..+..+++|++|++++|..+.. ++..+..++ +|++|++++|. . +.++++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 8885444 3555677788888888888833332 455567778 88888888884 2 236888888888
Q ss_pred eccCCCCc-CCCccccccccCCCcccccceeEecccCCcccc-cccccCCCCCCEEeecCCCCCcccCCCCC---ccccc
Q 045938 566 SGCDDDMV-SFPPEDIRLRTTLPLPACLASLMIGNFPNLERL-SSSIVDLQNLTHLELEDCPKLKYFPEKGL---PSSLL 640 (681)
Q Consensus 566 ~~~~~~~~-~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~ 640 (681)
++|. .+. ..+... ...++|++|++++|..+..- ...+..+++|+.|++++| ++..++ ...++
T Consensus 230 ~~~~-~l~~~~~~~l-------~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~ 296 (336)
T 2ast_B 230 SDSV-MLKNDCFQEF-------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALP 296 (336)
T ss_dssp TTCT-TCCGGGGGGG-------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHST
T ss_pred CCCC-cCCHHHHHHH-------hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCc
Confidence 8863 122 222222 34578888888887633211 114667888888888887 443222 24577
Q ss_pred EEEeCCch
Q 045938 641 QLYIGGCP 648 (681)
Q Consensus 641 ~L~i~~c~ 648 (681)
.|++++|.
T Consensus 297 ~L~l~~n~ 304 (336)
T 2ast_B 297 HLQINCSH 304 (336)
T ss_dssp TSEESCCC
T ss_pred ceEEeccc
Confidence 77776443
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=3.1e-15 Score=151.27 Aligned_cols=190 Identities=17% Similarity=0.202 Sum_probs=148.6
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceE
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRL 498 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 498 (681)
++. |++|++++|.... ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|. +..++ .+..+++|++|
T Consensus 40 l~~-L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDG-ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHT-CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred cCC-cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence 444 9999999986544 43 57889999999999998876544 8889999999999987 44555 46778899999
Q ss_pred eeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCCCc
Q 045938 499 EISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDDMV 573 (681)
Q Consensus 499 ~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~ 573 (681)
++++|.. ..++. +..+++|++|++++|...+ +++ ++.+++|++|++++|.. +..+++|++|++++| .+.
T Consensus 113 ~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n--~l~ 186 (308)
T 1h6u_A 113 DLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN--KIS 186 (308)
T ss_dssp ECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS--CCC
T ss_pred ECCCCCC-CCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCC--ccC
Confidence 9999985 44544 7889999999999997544 444 78889999999999976 457889999999987 566
Q ss_pred CCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC
Q 045938 574 SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE 632 (681)
Q Consensus 574 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 632 (681)
.++. . ..+++|+.|+++++ .+..++. +..+++|+.|++++| .+...|.
T Consensus 187 ~~~~-l-------~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 187 DISP-L-------ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CCGG-G-------GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEE-EEECCCE
T ss_pred cChh-h-------cCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCC-eeecCCe
Confidence 6554 1 46778899999886 6777764 778899999999887 4555443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=153.90 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=106.9
Q ss_pred CcEEEEcCCCCchhHH----HhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCcee--cCC--CCCCCCC
Q 045938 423 LKSLDVWSCSELESIA----ERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVS--FPQ--GGLPCAK 494 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~--~~~~~~~ 494 (681)
|++|++++|......+ ..+..+++|++|++++|.+....+..++++++|++|++++|...+. ++. ....+++
T Consensus 119 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 198 (310)
T 4glp_A 119 LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA 198 (310)
T ss_dssp CSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC
T ss_pred CCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC
Confidence 6677776666544221 2344566677777776666655556666666677777766654321 221 2245566
Q ss_pred cceEeeccccccccccc----cCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCC
Q 045938 495 LTRLEISYCKRLQVLPK----GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDD 570 (681)
Q Consensus 495 L~~L~l~~~~~l~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~ 570 (681)
|++|++++|.. ..++. .++.+++|++|++++|...+..|+.++.+. .+++|++|++++|
T Consensus 199 L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--------------~~~~L~~L~Ls~N-- 261 (310)
T 4glp_A 199 IQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM--------------WSSALNSLNLSFA-- 261 (310)
T ss_dssp CCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC--------------CCTTCCCEECCSS--
T ss_pred CCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc--------------CcCcCCEEECCCC--
Confidence 66666666653 22222 134556666666666665554444333321 1256666666665
Q ss_pred CCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCC
Q 045938 571 DMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCP 625 (681)
Q Consensus 571 ~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 625 (681)
.+..+|.. .+++|+.|+++++ .++.+|. +..+++|+.|++++|+
T Consensus 262 ~l~~lp~~---------~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 262 GLEQVPKG---------LPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCSCCSC---------CCSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred CCCchhhh---------hcCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 45566663 3478899999885 7787765 6788999999999985
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=8.6e-15 Score=147.95 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=141.9
Q ss_pred CCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccC
Q 045938 384 SSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPS 463 (681)
Q Consensus 384 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~ 463 (681)
+++|++|+++++ .++.+ + + +..++. |++|++++|...+ ++. +..+++|++|++++|.+.+. .
T Consensus 40 l~~L~~L~l~~~-~i~~l-~-----~------~~~l~~-L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~ 101 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTI-E-----G------VQYLNN-LIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--S 101 (308)
T ss_dssp HHTCCEEECTTS-CCCCC-T-----T------GGGCTT-CCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--G
T ss_pred cCCcCEEEeeCC-CccCc-h-----h------hhccCC-CCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--h
Confidence 357889998885 34431 1 0 444555 9999999986654 333 88899999999999987653 3
Q ss_pred cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCC
Q 045938 464 GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNL 543 (681)
Q Consensus 464 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 543 (681)
.+..+++|++|++++|. +..++. +..+++|++|++++|... .++. +..+++|+.|++++|... .+++ ++.+++|
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L 175 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKL 175 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTC
T ss_pred hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCC-CChh-hcCCCCC
Confidence 57788999999999887 445554 677889999999998754 4443 778899999999998654 4555 7888999
Q ss_pred ceeeeecCcc-----cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc
Q 045938 544 HRLEIIDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS 608 (681)
Q Consensus 544 ~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~ 608 (681)
++|++++|.. +..+++|++|++++| .+..++. . ..+++|+.|+++++ .+...|.
T Consensus 176 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N--~l~~~~~-l-------~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 176 TTLKADDNKISDISPLASLPNLIEVHLKNN--QISDVSP-L-------ANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECTTS--CCCBCGG-G-------TTCTTCCEEEEEEE-EEECCCE
T ss_pred CEEECCCCccCcChhhcCCCCCCEEEccCC--ccCcccc-c-------cCCCCCCEEEccCC-eeecCCe
Confidence 9999999887 457889999999997 5666553 2 46788999999986 5666654
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=5.1e-14 Score=137.87 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=119.2
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecC-CCCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFP-QGGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~ 497 (681)
+|++++.|++++|...+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|... .++ ..+..+++|++
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDK 111 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCE
Confidence 4456999999999877766677889999999999999988877777888999999999988754 444 45567889999
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC 568 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~ 568 (681)
|++++|......+..+..+++|++|++++|...+..+..++.+++|++|++++|.. +..+++|+.|++++|
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 99999875544444567899999999999976655554688888899999988876 346778888888886
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=2.8e-15 Score=153.98 Aligned_cols=233 Identities=14% Similarity=0.126 Sum_probs=149.6
Q ss_pred CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCcee--ec-CCCCCCCceEEEEecCCCCCccccccccCCCCccc
Q 045938 265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVS--FP-EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLE 341 (681)
Q Consensus 265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 341 (681)
+++++|+++++...+. +..+..+++|++|++++|. +.. ++ ....+++|++|++++|..-...+..+ ..+++|+
T Consensus 70 ~~l~~L~l~~n~l~~~-~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCS
T ss_pred ccceEEEcCCcccccc-chhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCC
Confidence 6788888888776433 3346678889999998876 432 22 23457888888888886333344444 5688888
Q ss_pred eeeeccCCCccc--cccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCC
Q 045938 342 ILEIWICNSLTY--IAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNL 419 (681)
Q Consensus 342 ~L~l~~c~~l~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 419 (681)
+|++++|..+++ ++.. ...+++|++|++++|..++.. +++.. +..+
T Consensus 146 ~L~L~~~~~l~~~~l~~~-----------------------~~~~~~L~~L~l~~~~~l~~~--------~~~~~-~~~l 193 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTL-----------------------LSSCSRLDELNLSWCFDFTEK--------HVQVA-VAHV 193 (336)
T ss_dssp EEECTTCBSCCHHHHHHH-----------------------HHHCTTCCEEECCCCTTCCHH--------HHHHH-HHHS
T ss_pred EEECCCCCCCCHHHHHHH-----------------------HhcCCCCCEEcCCCCCCcChH--------HHHHH-HHhc
Confidence 888888765553 2110 011235888888887555541 11111 3445
Q ss_pred CCCCcEEEEcCCC--Cc-hhHHHhcccCCCccEEEeeccc-CcccccCcCcCcccccEEeeccCCCceec-CCCCCCCCC
Q 045938 420 PPSLKSLDVWSCS--EL-ESIAERLDNNTSLETISISECE-NLKILPSGLHNLRQLQEIGIWECENLVSF-PQGGLPCAK 494 (681)
Q Consensus 420 p~~L~~L~l~~~~--~~-~~~~~~l~~l~~L~~L~ls~~~-~~~~~~~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~ 494 (681)
|.+|++|++++|. .. ..++..+..+++|++|++++|. +.+..+..+.++++|++|++++|..+... ...+..+++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 6248888888883 33 4456667788888999988888 55556667778888888888888633211 113456788
Q ss_pred cceEeeccccccccccc-cCccc-CCcceeeecccCCCCCccccCC
Q 045938 495 LTRLEISYCKRLQVLPK-GLHNL-TSLQQLTIGEGGELPSLEEDDG 538 (681)
Q Consensus 495 L~~L~l~~~~~l~~~~~-~l~~l-~~L~~L~l~~~~~~~~~~~~~~ 538 (681)
|++|++++| ++. .+..+ .+++.|++++|...+..|+.++
T Consensus 274 L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 274 LKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 888888887 222 23333 3467777887777766666444
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=6.4e-14 Score=137.19 Aligned_cols=174 Identities=16% Similarity=0.112 Sum_probs=107.4
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
.++++++++. ...+|..+. +++++|++++|.+.+..+..++++++|++|++++|......+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 5667777664 334444333 5788888888888777777777888888888888764433344456777888888888
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL 582 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~ 582 (681)
|......+..+..+++|++|++++|......+..++.+++|++|++++|. +..++...+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------------------l~~~~~~~~-- 151 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-------------------LQSIPAGAF-- 151 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------------------CCCCCTTTT--
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-------------------CCccCHHHc--
Confidence 77554444566777888888888876554433334555555555555443 333333211
Q ss_pred ccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCC
Q 045938 583 RTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCP 625 (681)
Q Consensus 583 ~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 625 (681)
..+++|+.|+++++ .+..++. .+..+++|+.|++++|+
T Consensus 152 ----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 152 ----DKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ----TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ----CcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 23344555555553 4444544 45566777777777764
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=2.3e-15 Score=157.76 Aligned_cols=227 Identities=15% Similarity=0.119 Sum_probs=135.2
Q ss_pred CCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCC---chhHH-------HhcccCCCccEEEe
Q 045938 383 TSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSE---LESIA-------ERLDNNTSLETISI 452 (681)
Q Consensus 383 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~---~~~~~-------~~l~~l~~L~~L~l 452 (681)
.+++|++|+++++ .++... +..+.. .+..++. |++|++++|.. .+.+| ..+..+++|++|++
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~-----~~~l~~-~l~~~~~-L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEA-----ARWLSE-NIASKKD-LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HCSCCCEEECTTS-EECHHH-----HHHHHH-TTTTCTT-CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred cCCCccEEECCCC-CCCHHH-----HHHHHH-HHHhCCC-ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3556888888775 233210 001111 0334554 88888887632 22223 23467788888888
Q ss_pred ecccCcc----cccCcCcCcccccEEeeccCCCcee----cCCCCCCC---------CCcceEeecccccc-cccc---c
Q 045938 453 SECENLK----ILPSGLHNLRQLQEIGIWECENLVS----FPQGGLPC---------AKLTRLEISYCKRL-QVLP---K 511 (681)
Q Consensus 453 s~~~~~~----~~~~~l~~l~~L~~L~l~~~~~l~~----l~~~~~~~---------~~L~~L~l~~~~~l-~~~~---~ 511 (681)
++|.+.. .++..+.++++|++|++++|..... ++..+..+ ++|++|++++|... ..++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 8887765 3566667778888888888764211 22112222 67888888887754 2333 3
Q ss_pred cCcccCCcceeeecccCCCC-----CccccCCCCCCCceeeeecCcc-----------cccCCcccEEEEeccCCCCcCC
Q 045938 512 GLHNLTSLQQLTIGEGGELP-----SLEEDDGLPTNLHRLEIIDNKK-----------IWKFSSLRQLTISGCDDDMVSF 575 (681)
Q Consensus 512 ~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~-----------~~~l~~L~~L~l~~~~~~~~~l 575 (681)
.+..+++|++|++++|.... ..+..+..+++|++|++++|.+ +..+++|++|++++| .+...
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~~ 259 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--LLSAR 259 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--CCCHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--CCchh
Confidence 45567788888888886542 2332566778888888888876 346777888888876 23221
Q ss_pred -----CccccccccCCCcccccceeEecccCCccc-----ccccc-cCCCCCCEEeecCCC
Q 045938 576 -----PPEDIRLRTTLPLPACLASLMIGNFPNLER-----LSSSI-VDLQNLTHLELEDCP 625 (681)
Q Consensus 576 -----~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~-----l~~~~-~~~~~L~~L~l~~c~ 625 (681)
+... .....++|++|+++++ .+.. ++..+ .++++|++|++++|+
T Consensus 260 ~~~~l~~~l-----~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 260 GAAAVVDAF-----SKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHH-----HTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hHHHHHHHH-----hhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 1110 0012566777777775 4554 66555 456777777777763
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=3e-15 Score=156.90 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=49.8
Q ss_pred CcEEEEcCCCCc-hhHH---HhcccCCCccEEEeecccCcc-----cccCcCcCcccccEEeeccCCCc----eecCCCC
Q 045938 423 LKSLDVWSCSEL-ESIA---ERLDNNTSLETISISECENLK-----ILPSGLHNLRQLQEIGIWECENL----VSFPQGG 489 (681)
Q Consensus 423 L~~L~l~~~~~~-~~~~---~~l~~l~~L~~L~ls~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~l----~~l~~~~ 489 (681)
|++|++++|... ..++ ..+..+++|++|++++|.+.. ..+..+.++++|+.|++++|... ..++..+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 555555555443 1222 234455555555555555442 12224445555555555555431 2233334
Q ss_pred CCCCCcceEeecccccccc----ccccC--cccCCcceeeecccCCC
Q 045938 490 LPCAKLTRLEISYCKRLQV----LPKGL--HNLTSLQQLTIGEGGEL 530 (681)
Q Consensus 490 ~~~~~L~~L~l~~~~~l~~----~~~~l--~~l~~L~~L~l~~~~~~ 530 (681)
..+++|++|++++|..... ++..+ +.+++|+.|++++|...
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 4445555555555543322 23333 22455555555555433
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=1.7e-15 Score=157.17 Aligned_cols=204 Identities=11% Similarity=-0.003 Sum_probs=107.2
Q ss_pred cCCCCCCCcEEEEcCCCCchhHHHhcccC-----CCccEEEeecccCcccccCcC----cCc-ccccEEeeccCCCceec
Q 045938 416 VGNLPPSLKSLDVWSCSELESIAERLDNN-----TSLETISISECENLKILPSGL----HNL-RQLQEIGIWECENLVSF 485 (681)
Q Consensus 416 ~~~~p~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~ls~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~l~~l 485 (681)
+..+|.+|++|++++|...+..+..+..+ ++|++|++++|.+.+..+..+ ..+ ++|++|++++|.. +..
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~ 124 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSK 124 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGS
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcH
Confidence 34455347777777776555444444443 777777777777665443322 223 6777777777663 222
Q ss_pred CC-----CCCC-CCCcceEeeccccccc----cccccCcccC-CcceeeecccCCCCCccc----cCCCC-CCCceeeee
Q 045938 486 PQ-----GGLP-CAKLTRLEISYCKRLQ----VLPKGLHNLT-SLQQLTIGEGGELPSLEE----DDGLP-TNLHRLEII 549 (681)
Q Consensus 486 ~~-----~~~~-~~~L~~L~l~~~~~l~----~~~~~l~~l~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~ 549 (681)
+. .+.. +++|++|++++|.... .++..+..++ +|++|++++|......+. .+..+ ++|++|+++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 11 1112 2467777777776542 2233333444 777777777765443322 12333 467777777
Q ss_pred cCcccc-----------c-CCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccC-------Ccccccccc
Q 045938 550 DNKKIW-----------K-FSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFP-------NLERLSSSI 610 (681)
Q Consensus 550 ~~~~~~-----------~-l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~-------~l~~l~~~~ 610 (681)
+|.+-. . .++|++|++++| .+...+.... .......++|+.|+++++. .+..++..+
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~~~~~l--~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLN--CLHGPSLENL--KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSS--CCCCCCHHHH--HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCC--CCCcHHHHHH--HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 776511 2 346777777776 3333322110 1111334556666666652 122333445
Q ss_pred cCCCCCCEEeecCC
Q 045938 611 VDLQNLTHLELEDC 624 (681)
Q Consensus 611 ~~~~~L~~L~l~~c 624 (681)
..+++|+.|++++|
T Consensus 281 ~~l~~L~~LdL~~N 294 (362)
T 3goz_A 281 PNIQKIILVDKNGK 294 (362)
T ss_dssp TTCCEEEEECTTSC
T ss_pred ccCCceEEEecCCC
Confidence 55666666666665
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=1.6e-13 Score=137.37 Aligned_cols=169 Identities=17% Similarity=0.183 Sum_probs=98.1
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|++|++++|.... + +.+..+++|++|++++|.+.+..+ +.++++|+.|++++|. +..++. +..+++|++|++++
T Consensus 48 L~~L~l~~~~i~~-~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 48 IDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp CCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTT
T ss_pred ccEEEccCCCccc-C-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCC
Confidence 6777777664432 2 235666667777776666655333 5566666666666665 333432 45556666666666
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL 582 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~ 582 (681)
|... .+ ..+..+++|+.|++++|...+. +.++ .+++|++|++++| .+..++. .
T Consensus 122 n~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~-----------------~l~~L~~L~L~~N--~l~~~~~-l--- 174 (291)
T 1h6t_A 122 NGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLS-----------------RLTKLDTLSLEDN--QISDIVP-L--- 174 (291)
T ss_dssp SCCC-CC-GGGGGCTTCCEEECCSSCCCCC--GGGG-----------------GCTTCSEEECCSS--CCCCCGG-G---
T ss_pred CcCC-CC-hhhcCCCCCCEEEccCCcCCcc--hhhc-----------------cCCCCCEEEccCC--ccccchh-h---
Confidence 6532 23 2355566666666666653322 2233 4555555555554 3444333 1
Q ss_pred ccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938 583 RTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP 631 (681)
Q Consensus 583 ~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 631 (681)
..+++|+.|+++++ .+..++. +..+++|+.|++++| .+...|
T Consensus 175 ----~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 175 ----AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQ-ECLNKP 216 (291)
T ss_dssp ----TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEE-EEECCC
T ss_pred ----cCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCC-cccCCc
Confidence 35566777777764 6666654 778899999999997 344443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=2.3e-13 Score=129.00 Aligned_cols=149 Identities=16% Similarity=0.062 Sum_probs=118.2
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 497 (681)
+++++++|++++|...+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.. ..++. .+..+++|++
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCE
Confidence 344699999999977655555678999999999999988876666678899999999999874 45554 3567899999
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEecc
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGC 568 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~ 568 (681)
|++++|......+..+..+++|+.|++++|...+..+..+..+++|++|++++|.....+++|+.|++..|
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 175 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHH
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHH
Confidence 99999986544444578899999999999986655555578888899999998887777778887777765
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=3.2e-13 Score=126.81 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=92.3
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|++|++++|.+. .++ .+..+++|++|++++|.... +..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 46 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 46 LTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp CCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred ccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 777777776544 344 46677777777777774432 23566677777777777764444555666777777777777
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEecc
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGC 568 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~ 568 (681)
|......+..++.+++|++|++++|..++.++. ++.+++|++|++++|.. +..+++|++|++++|
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-GGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccHh-hcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCc
Confidence 776555566667777777777777765555553 66666666666666654 335666666666665
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=1e-14 Score=151.17 Aligned_cols=224 Identities=13% Similarity=0.033 Sum_probs=156.9
Q ss_pred cCCCCCCCcEEEEcCCCCchhHH----HhcccCC-CccEEEeecccCcccccCcCcCc-----ccccEEeeccCCCceec
Q 045938 416 VGNLPPSLKSLDVWSCSELESIA----ERLDNNT-SLETISISECENLKILPSGLHNL-----RQLQEIGIWECENLVSF 485 (681)
Q Consensus 416 ~~~~p~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~ls~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~l~~l 485 (681)
+...+++|++|++++|...+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|......
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 44556679999999998665544 6678888 99999999999887655555554 89999999999843222
Q ss_pred CC----CCCCC-CCcceEeeccccccccccccC----cc-cCCcceeeecccCCCCC----ccccCCCCC-CCceeeeec
Q 045938 486 PQ----GGLPC-AKLTRLEISYCKRLQVLPKGL----HN-LTSLQQLTIGEGGELPS----LEEDDGLPT-NLHRLEIID 550 (681)
Q Consensus 486 ~~----~~~~~-~~L~~L~l~~~~~l~~~~~~l----~~-l~~L~~L~l~~~~~~~~----~~~~~~~~~-~L~~L~l~~ 550 (681)
+. .+..+ ++|++|++++|......+..+ .. .++|++|++++|..... ++..+..++ +|++|++++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 21 12333 689999999998654443332 33 36999999999976543 233344444 999999999
Q ss_pred Ccc-----------cccC-CcccEEEEeccCCCCcC-----CCccccccccCCCcccccceeEecccCCccccc-----c
Q 045938 551 NKK-----------IWKF-SSLRQLTISGCDDDMVS-----FPPEDIRLRTTLPLPACLASLMIGNFPNLERLS-----S 608 (681)
Q Consensus 551 ~~~-----------~~~l-~~L~~L~l~~~~~~~~~-----l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~-----~ 608 (681)
|.+ +..+ ++|++|++++| .+.. ++.... ...++|++|+++++ .+...+ .
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~N-~l~~~~~~~l~~ 247 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS------SIPNHVVSLNLCLN-CLHGPSLENLKL 247 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH------HSCTTCCEEECCSS-CCCCCCHHHHHH
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh------cCCCCceEEECcCC-CCCcHHHHHHHH
Confidence 987 1244 59999999998 4444 222221 12458999999996 565543 3
Q ss_pred cccCCCCCCEEeecCCC---C----CcccCC-CCCcccccEEEeCCch
Q 045938 609 SIVDLQNLTHLELEDCP---K----LKYFPE-KGLPSSLLQLYIGGCP 648 (681)
Q Consensus 609 ~~~~~~~L~~L~l~~c~---~----l~~l~~-~~~~~~L~~L~i~~c~ 648 (681)
.+..+++|++|++++|. . ++.++. ...+++|++|++++|+
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 45778999999999984 0 222222 2346789999999986
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=2.3e-13 Score=127.81 Aligned_cols=107 Identities=18% Similarity=0.148 Sum_probs=74.0
Q ss_pred ccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcce
Q 045938 442 DNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQ 521 (681)
Q Consensus 442 ~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 521 (681)
..+++|++|++++|.+. .++ .+..+++|++|++++|. +..++ .+..+++|++|++++|......+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55678888888888776 334 57778888888888874 44443 4566778888888887766556677777888888
Q ss_pred eeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938 522 LTIGEGGELPSLEEDDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 522 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 552 (681)
|++++|...+..+..++.+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 8888877665555555555555555555443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=9.3e-13 Score=131.73 Aligned_cols=161 Identities=16% Similarity=0.171 Sum_probs=121.7
Q ss_pred CCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccC
Q 045938 384 SSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPS 463 (681)
Q Consensus 384 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~ 463 (681)
.++|++|+++++ .++.+ + + +..++. |++|++++|...+.. . +..+++|++|++++|.+.+ ..
T Consensus 45 l~~L~~L~l~~~-~i~~~-~-----~------~~~l~~-L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~--~~ 106 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV-Q-----G------IQYLPN-VTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD--LS 106 (291)
T ss_dssp HHTCCEEECTTS-CCCCC-T-----T------GGGCTT-CCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC--GG
T ss_pred cCcccEEEccCC-CcccC-h-----h------HhcCCC-CCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC--Ch
Confidence 458999999885 34431 1 1 445555 999999999766543 3 8999999999999998876 23
Q ss_pred cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCC
Q 045938 464 GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNL 543 (681)
Q Consensus 464 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 543 (681)
.+..+++|++|++++|. +..++ .+..+++|+.|++++|.... + ..+..+++|+.|++++|...+ +++ ++.+++|
T Consensus 107 ~l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L 180 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKL 180 (291)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTC
T ss_pred hhccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcccc-chh-hcCCCcc
Confidence 48889999999999987 44454 46678999999999998543 4 568889999999999997554 444 7788888
Q ss_pred ceeeeecCcc-----cccCCcccEEEEecc
Q 045938 544 HRLEIIDNKK-----IWKFSSLRQLTISGC 568 (681)
Q Consensus 544 ~~L~l~~~~~-----~~~l~~L~~L~l~~~ 568 (681)
++|++++|.+ +..+++|+.|++++|
T Consensus 181 ~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 181 QNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred CEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 8888888765 345666666666665
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=3.4e-12 Score=121.90 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=108.0
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCC-CCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG-GLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~ 497 (681)
+|.++++|++++|.+....+..+..+++|++|++++|.+....|..+.++++|++|++++|. +..++.. +..+++|++
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCE
Confidence 44569999999987766555678889999999999999888778889999999999999887 4466654 456889999
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 553 (681)
|++++|......+..+..+++|+.|++++|...+..+..+..+++|++|++++|..
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99999987666677888899999999999987666555677777888888877764
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=2.6e-12 Score=139.53 Aligned_cols=166 Identities=20% Similarity=0.199 Sum_probs=84.2
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|++|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.+ +|+.|++++|. +..+|. .+++|+.|++++
T Consensus 82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADN 149 (571)
T ss_dssp CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCS
T ss_pred CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCC
Confidence 555555555433 333 334555555555554443 333 332 55555555544 223443 344555555555
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL 582 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~ 582 (681)
|.. ..+|. .+++|+.|++++|...+ +|. ++ ++|+.|++++| .+..+|. ...
T Consensus 150 N~l-~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------------------~~L~~L~Ls~N--~L~~lp~-~~~- 200 (571)
T 3cvr_A 150 NQL-TMLPE---LPTSLEVLSVRNNQLTF-LPE-LP-------------------ESLEALDVSTN--LLESLPA-VPV- 200 (571)
T ss_dssp SCC-SCCCC---CCTTCCEEECCSSCCSC-CCC-CC-------------------TTCCEEECCSS--CCSSCCC-CC--
T ss_pred Ccc-CcCCC---cCCCcCEEECCCCCCCC-cch-hh-------------------CCCCEEECcCC--CCCchhh-HHH-
Confidence 542 22333 33455555555554322 333 22 45555555555 4445554 210
Q ss_pred ccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938 583 RTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP 631 (681)
Q Consensus 583 ~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 631 (681)
......+.|+.|+++++ .++.+|..+..+++|+.|++++|+....+|
T Consensus 201 -~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp --------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred -hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 00011223388888875 778888877778888888888886544444
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=4.7e-12 Score=137.52 Aligned_cols=174 Identities=21% Similarity=0.269 Sum_probs=114.4
Q ss_pred CccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeec
Q 045938 446 SLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIG 525 (681)
Q Consensus 446 ~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~ 525 (681)
++++|++++|.+.+ +|..+ +++|++|++++|. +..+| ..+++|+.|++++|... .+|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECC
Confidence 56666666665544 44433 2566666666655 33455 23456666666666533 3555 333 66666666
Q ss_pred ccCCCCCccccCCCCCCCceeeeecCcccc---cCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCC
Q 045938 526 EGGELPSLEEDDGLPTNLHRLEIIDNKKIW---KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPN 602 (681)
Q Consensus 526 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~ 602 (681)
+|...+ +|. .+++|++|++++|.+-. .+++|++|++++| .+..+|. . . ++|+.|+++++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N--~L~~lp~-l-------~--~~L~~L~Ls~N-~ 191 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNN--QLTFLPE-L-------P--ESLEALDVSTN-L 191 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS--CCSCCCC-C-------C--TTCCEEECCSS-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCC--CCCCcch-h-------h--CCCCEEECcCC-C
Confidence 665433 443 45666666666666411 4568888888887 5666776 3 2 89999999996 8
Q ss_pred cccccccccCCCCC-------CEEeecCCCCCcccCCC-CCcccccEEEeCCchhHH
Q 045938 603 LERLSSSIVDLQNL-------THLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLIA 651 (681)
Q Consensus 603 l~~l~~~~~~~~~L-------~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~ 651 (681)
++.+|. +.. +| +.|++++| .++.+|.. ..+++|++|++++|+.-.
T Consensus 192 L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 192 LESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 889988 554 77 99999998 78889873 448999999999997543
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=3.4e-12 Score=120.91 Aligned_cols=109 Identities=12% Similarity=0.060 Sum_probs=50.5
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeec
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~ 501 (681)
|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|... .++. .+..+++|+.|+++
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECC
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEec
Confidence 444444444333222223444555555555555544433434445555555555554422 2332 23445555555555
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCC
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGL 539 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 539 (681)
+|... +.+++|+.|+++.|...+.+|..++.
T Consensus 157 ~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 157 DNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp SCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CCCee-------cCCCCHHHHHHHHHhCCceeeccCcc
Confidence 55321 23345555555555555555544443
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=6e-12 Score=121.06 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=106.7
Q ss_pred CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 497 (681)
+|++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+.++++|+.|++++|. +..++. .+..+++|++
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCe
Confidence 44569999999998777667788899999999999999876666667889999999999887 445554 3567889999
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 553 (681)
|++++|.. ..+|..+..+++|+.|++++|......+..+..+++|++|++++|..
T Consensus 117 L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 117 LFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EeccCCcc-cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999884 57888888999999999999976654445577777888888877765
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=3.9e-12 Score=121.45 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=103.3
Q ss_pred CCCCCcEEEEcCCCCchhHH-HhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIA-ERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 497 (681)
+|..+++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 34458889999887655433 34778889999999998888777777888889999999888754333334667888999
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 553 (681)
|++++|......|..+..+++|+.|++++|...+..|..+..+++|++|++++|..
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99998887666677788888899999988887766677777777777777777764
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=3.3e-12 Score=140.32 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=135.7
Q ss_pred cccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcc
Q 045938 441 LDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ 520 (681)
Q Consensus 441 l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~ 520 (681)
+..+++|+.|++++|.+... + .+..+++|+.|++++|.. ..++. +..+++|+.|++++|.. ..++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCC
Confidence 46788999999999987653 3 588899999999999874 44554 77889999999999974 4454 688999999
Q ss_pred eeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCCCcCCCccccccccCCCccccccee
Q 045938 521 QLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASL 595 (681)
Q Consensus 521 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l 595 (681)
.|++++|.... ++. +..+++|+.|+|++|.+ +..+++|+.|+|++| .+..++. . ..+++|+.|
T Consensus 113 ~L~Ls~N~l~~-l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N--~l~~~~~-l-------~~l~~L~~L 180 (605)
T 1m9s_A 113 SLSLEHNGISD-ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN--QISDIVP-L-------AGLTKLQNL 180 (605)
T ss_dssp EEECTTSCCCC-CGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSS--CCCCCGG-G-------TTCTTCCEE
T ss_pred EEEecCCCCCC-Ccc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCC--cCCCchh-h-------ccCCCCCEE
Confidence 99999998554 444 88899999999999987 558899999999997 5555554 2 467889999
Q ss_pred EecccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938 596 MIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP 631 (681)
Q Consensus 596 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 631 (681)
+++++ .+..++ .+..+++|+.|++++|+ +...|
T Consensus 181 ~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 181 YLSKN-HISDLR-ALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp ECCSS-CCCBCG-GGTTCTTCSEEECCSEE-EECCC
T ss_pred ECcCC-CCCCCh-HHccCCCCCEEEccCCc-CcCCc
Confidence 99986 777775 57889999999999974 44443
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=3.7e-12 Score=139.91 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=32.7
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCC
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECE 480 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~ 480 (681)
|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|+
T Consensus 155 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 155 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEE
T ss_pred CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCc
Confidence 6666666665544333 66666666666666665542 245566666666666655
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=8.2e-12 Score=119.22 Aligned_cols=141 Identities=19% Similarity=0.152 Sum_probs=111.2
Q ss_pred cEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccc
Q 045938 424 KSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYC 503 (681)
Q Consensus 424 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 503 (681)
+.++.+++. +..+|..+. +++++|++++|.+....+..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666653 344554333 68999999999998877778899999999999998865555777888999999999999
Q ss_pred cccccccc-cCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938 504 KRLQVLPK-GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC 568 (681)
Q Consensus 504 ~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~ 568 (681)
... .+|. .+..+++|+.|++++|......+..+..+++|++|++++|.+ +..+++|+.|++++|
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 855 4554 467899999999999987777677788888999999988876 336777888888876
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=1.6e-12 Score=127.94 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=99.7
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
+..++++++...+ ++ .+..+++|++|++++|.+.. ++ .+..+++|+.|++++|. +..++. +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence 5555666654332 22 45667777777777776553 33 56667777777777765 344444 56667777777777
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL 582 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~ 582 (681)
|.. ..++.... ++|+.|++++|...+ ++. ++.+++|++|++++|+ +..++. .
T Consensus 95 N~l-~~l~~~~~--~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~Ls~N~-------------------i~~~~~-l--- 146 (263)
T 1xeu_A 95 NRL-KNLNGIPS--ACLSRLFLDNNELRD-TDS-LIHLKNLEILSIRNNK-------------------LKSIVM-L--- 146 (263)
T ss_dssp SCC-SCCTTCCC--SSCCEEECCSSCCSB-SGG-GTTCTTCCEEECTTSC-------------------CCBCGG-G---
T ss_pred Ccc-CCcCcccc--CcccEEEccCCccCC-Chh-hcCcccccEEECCCCc-------------------CCCChH-H---
Confidence 763 33443222 677777777775433 332 5555555555555544 333321 1
Q ss_pred ccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938 583 RTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP 631 (681)
Q Consensus 583 ~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 631 (681)
..+++|+.|+++++ .+..+ ..+..+++|+.|++++|+ +...|
T Consensus 147 ----~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 147 ----GFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp ----GGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE-EECCC
T ss_pred ----ccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCc-ccCCc
Confidence 24455666666664 55555 457788999999999974 44444
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=8e-12 Score=129.23 Aligned_cols=150 Identities=16% Similarity=0.056 Sum_probs=115.3
Q ss_pred CCCCCCcEEEEcCCCCchhHHHhcc-cCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCc
Q 045938 418 NLPPSLKSLDVWSCSELESIAERLD-NNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKL 495 (681)
Q Consensus 418 ~~p~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L 495 (681)
.+|..++.|++++|.+.+..+..+. .+++|++|++++|.+....+..+.++++|++|++++|.. ..++. .+..+++|
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L 114 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQAL 114 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCC
Confidence 3455689999999877665555566 899999999999998887777888999999999999884 45544 56778899
Q ss_pred ceEeeccccccccccccCcccCCcceeeecccCCCCCccccC---CCCCCCceeeeecCcc-------cccCCc--ccEE
Q 045938 496 TRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDD---GLPTNLHRLEIIDNKK-------IWKFSS--LRQL 563 (681)
Q Consensus 496 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~-------~~~l~~--L~~L 563 (681)
++|++++|......+..+..+++|+.|++++|......+..+ ..+++|+.|++++|++ +..++. ++.|
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence 999999998766667788899999999999987554333333 5688899999998876 224555 4778
Q ss_pred EEecc
Q 045938 564 TISGC 568 (681)
Q Consensus 564 ~l~~~ 568 (681)
++.+|
T Consensus 195 ~l~~N 199 (361)
T 2xot_A 195 YLHNN 199 (361)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 88886
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=1.8e-11 Score=117.71 Aligned_cols=46 Identities=39% Similarity=0.538 Sum_probs=23.0
Q ss_pred CcccccccccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCch
Q 045938 602 NLERLSSSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCP 648 (681)
Q Consensus 602 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 648 (681)
++..+|..+..+++|++|++++| .++.++.. ..+++|++|++++||
T Consensus 123 ~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 123 KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 34444444455555555555554 44444432 224555555555554
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=2.1e-11 Score=116.41 Aligned_cols=143 Identities=14% Similarity=0.051 Sum_probs=111.9
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccccc-CcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP-SGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
-+.++++++.. +.+|..+ .+.+++|++++|.+....+ ..+..+++|+.|++++|......+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l-~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKL-NKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCc-ccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 45778887754 4455443 3467899999999887644 457889999999999988443333467889999999999
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC 568 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~ 568 (681)
+|......+..+..+++|++|++++|...+..+..+..+++|++|++++|.+ +..+++|++|++++|
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 9987666666788999999999999997777777788889999999998876 346778888888886
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=3.9e-11 Score=122.39 Aligned_cols=123 Identities=14% Similarity=0.048 Sum_probs=88.9
Q ss_pred CCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcc-eE
Q 045938 421 PSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLT-RL 498 (681)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L 498 (681)
.+++.+.+.+.-...........+++|+.+++++|.+.......|.++++|+.+++.++ +..++. .+..|++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 34778888776433333222234889999999998887776777888999999999876 566665 456788898 99
Q ss_pred eeccccccccc-cccCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938 499 EISYCKRLQVL-PKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE 547 (681)
Q Consensus 499 ~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 547 (681)
++.+ . +..+ +..+..|++|+.+++.++.....-+..|..+++|+.+.
T Consensus 280 ~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 280 ELPA-S-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECT-T-CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEcc-c-ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 9988 3 4444 45778899999999887765544455677777777765
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=5.1e-12 Score=115.23 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=59.6
Q ss_pred CCCCCcEEEEcCCCCc-hhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSEL-ESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 497 (681)
.|+++++|++++|... +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.....++..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3344777777766554 34555556666666666666665443 44555666666666665533323333333556666
Q ss_pred Eeecccccccccc--ccCcccCCcceeeecccCCC
Q 045938 498 LEISYCKRLQVLP--KGLHNLTSLQQLTIGEGGEL 530 (681)
Q Consensus 498 L~l~~~~~l~~~~--~~l~~l~~L~~L~l~~~~~~ 530 (681)
|++++|.. ..++ ..+..+++|+.|++++|...
T Consensus 100 L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 100 LNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp EECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred EeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 66666553 3322 34555566666666665433
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=2e-11 Score=126.25 Aligned_cols=167 Identities=15% Similarity=0.100 Sum_probs=126.4
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCc-CcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLH-NLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
-+.++++++. +..+|..+. +.++.|++++|.+....+..+. ++++|+.|++++|......+..+..+++|++|+++
T Consensus 20 ~~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3567777664 344554333 4689999999999887777776 89999999999988543334467889999999999
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------c---ccCCcccEEEEeccCCC
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------I---WKFSSLRQLTISGCDDD 571 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~---~~l~~L~~L~l~~~~~~ 571 (681)
+|......+..+..+++|+.|++++|......+..+..+++|++|++++|.+ + ..+++|+.|+|++| .
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N--~ 174 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN--K 174 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS--C
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC--C
Confidence 9986554455788999999999999987766677789999999999999987 1 35899999999998 6
Q ss_pred CcCCCccccccccCCCcccc--cceeEeccc
Q 045938 572 MVSFPPEDIRLRTTLPLPAC--LASLMIGNF 600 (681)
Q Consensus 572 ~~~l~~~~~~~~~~~~~~~~--L~~l~l~~~ 600 (681)
+..+|...+ ..++. ++.|++.++
T Consensus 175 l~~l~~~~~------~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 175 LKKLPLTDL------QKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCCCCHHHH------HHSCHHHHTTEECCSS
T ss_pred CCccCHHHh------hhccHhhcceEEecCC
Confidence 777775432 12232 466777764
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=3.1e-13 Score=147.59 Aligned_cols=188 Identities=15% Similarity=0.102 Sum_probs=118.2
Q ss_pred CCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeeccc-------------CcccccCcCcCcccccEEe-eccCCC-
Q 045938 417 GNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECE-------------NLKILPSGLHNLRQLQEIG-IWECEN- 481 (681)
Q Consensus 417 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~- 481 (681)
...++ |+.|++++|. ++.+|..++++++|+.|++++|. ..+..|..++++++|+.|+ ++.+..
T Consensus 346 ~~~~~-L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQ-LFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTT-SSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCcc-ceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34444 9999999885 56789999999999999987665 3444566667777888777 443210
Q ss_pred -----------ceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeec
Q 045938 482 -----------LVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIID 550 (681)
Q Consensus 482 -----------l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 550 (681)
+..++. ..|+.|++++|.. ..+|. ++.+++|+.|++++|... .+|..++.+++|++|++++
T Consensus 424 ~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhhhcccccccCc-----cCceEEEecCCCC-CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 111111 2466677777653 34554 666677777777776544 5555555555555555544
Q ss_pred CcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccc--cccccCCCCCCEEeecCCCCCc
Q 045938 551 NKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL--SSSIVDLQNLTHLELEDCPKLK 628 (681)
Q Consensus 551 ~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~ 628 (681)
|. +..+| .. ..+++|+.|+++++ .+..+ |..+..+++|+.|++++| .+.
T Consensus 496 N~-------------------l~~lp-~l-------~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~ 546 (567)
T 1dce_A 496 NA-------------------LENVD-GV-------ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLC 546 (567)
T ss_dssp SC-------------------CCCCG-GG-------TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGG
T ss_pred CC-------------------CCCCc-cc-------CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCC
Confidence 43 33444 22 35566666666664 66666 677788888888888887 466
Q ss_pred ccCCCC-----CcccccEEE
Q 045938 629 YFPEKG-----LPSSLLQLY 643 (681)
Q Consensus 629 ~l~~~~-----~~~~L~~L~ 643 (681)
.+|+.. .+++|+.|+
T Consensus 547 ~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 547 QEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GSSSCTTHHHHHCTTCSEEE
T ss_pred CCccHHHHHHHHCcccCccC
Confidence 655421 167777775
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=2.5e-11 Score=110.61 Aligned_cols=126 Identities=14% Similarity=0.104 Sum_probs=99.1
Q ss_pred cccCCCccEEEeecccCc-ccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCc
Q 045938 441 LDNNTSLETISISECENL-KILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSL 519 (681)
Q Consensus 441 l~~l~~L~~L~ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L 519 (681)
....++|++|++++|.+. +.+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 345689999999999987 5678888999999999999988 5455 667789999999999999766577777779999
Q ss_pred ceeeecccCCCCCc-cccCCCCCCCceeeeecCcc----------cccCCcccEEEEecc
Q 045938 520 QQLTIGEGGELPSL-EEDDGLPTNLHRLEIIDNKK----------IWKFSSLRQLTISGC 568 (681)
Q Consensus 520 ~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~----------~~~l~~L~~L~l~~~ 568 (681)
+.|++++|...+.. +..++.+++|++|++++|.. +..+++|+.|++++|
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999755422 25577788888888887765 224666677766665
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=7.5e-12 Score=123.03 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=110.4
Q ss_pred CCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcc
Q 045938 417 GNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT 496 (681)
Q Consensus 417 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 496 (681)
..++. |++|++++|... .++ .+..+++|++|++++|.+.+..+ +.++++|+.|++++|. +..++.... ++|+
T Consensus 38 ~~l~~-L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 38 KELSG-VQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR-LKNLNGIPS--ACLS 109 (263)
T ss_dssp HHHTT-CSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC-CSCCTTCCC--SSCC
T ss_pred hhcCc-CcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc-cCCcCcccc--Cccc
Confidence 34455 999999999654 454 68899999999999998877544 8899999999999987 455665333 8999
Q ss_pred eEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEecc
Q 045938 497 RLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGC 568 (681)
Q Consensus 497 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~ 568 (681)
.|++++|.. ..++ .+..+++|+.|++++|...+ ++ .++.+++|++|++++|.+ +..+++|+.|++++|
T Consensus 110 ~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 110 RLFLDNNEL-RDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp EEECCSSCC-SBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEE
T ss_pred EEEccCCcc-CCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCC
Confidence 999999985 4454 58899999999999998544 44 377888888888888876 446677777777776
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=5.6e-12 Score=112.39 Aligned_cols=127 Identities=18% Similarity=0.119 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCc-hhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEe
Q 045938 421 PSLKSLDVWSCSEL-ESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLE 499 (681)
Q Consensus 421 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 499 (681)
+++++|++++|... +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34777777777665 35565667777777777777766554 5566677777777777764433554444466777777
Q ss_pred ecccccccc-ccccCcccCCcceeeecccCCCCCcc---ccCCCCCCCceeeee
Q 045938 500 ISYCKRLQV-LPKGLHNLTSLQQLTIGEGGELPSLE---EDDGLPTNLHRLEII 549 (681)
Q Consensus 500 l~~~~~l~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 549 (681)
+++|..... .+..++.+++|++|++++|...+..+ ..++.+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777764331 22566677777777777775443322 235556666666654
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.14 E-value=3.3e-11 Score=107.29 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=85.0
Q ss_pred ccCCCccEEEeecccCc-ccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcc
Q 045938 442 DNNTSLETISISECENL-KILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ 520 (681)
Q Consensus 442 ~~l~~L~~L~ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~ 520 (681)
...++|++|++++|.+. +.+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45578999999999887 5778888889999999999886 4445 5677888999999999987665777777789999
Q ss_pred eeeecccCCCCC-ccccCCCCCCCceeeeecCcc
Q 045938 521 QLTIGEGGELPS-LEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 521 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 553 (681)
+|++++|...+. .+..++.+++|++|++++|..
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 999999985542 225566666677777666653
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=1.9e-10 Score=107.13 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=45.6
Q ss_pred CccEEEeecccCcccccC-cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeee
Q 045938 446 SLETISISECENLKILPS-GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTI 524 (681)
Q Consensus 446 ~L~~L~ls~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 524 (681)
++++|++++|.+....+. .++++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 344444444433332222 2344444444444444422222333444444444444444433333333444455555555
Q ss_pred cccCCCCCccccCCCCCCCceeeeecCc
Q 045938 525 GEGGELPSLEEDDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 552 (681)
++|...+..|..++.+++|++|++++|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 5554444334444444444444444443
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=4.8e-10 Score=114.25 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=92.4
Q ss_pred cccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccCCcceeeecccCC---CCCc-cccCCC---
Q 045938 468 LRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGE---LPSL-EEDDGL--- 539 (681)
Q Consensus 468 l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~---~~~~-~~~~~~--- 539 (681)
+++|+.+++.+ .+..++. .+..|++|+++++.++......+..+..+.++..+....... ...+ ...+..
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 67777777765 3445554 344667777777777664433334455555554444332100 0000 000111
Q ss_pred -----------------------CCCCceeeeecCcc------c-ccCCcccEEEEeccCCCCcCCCccccccccCCCcc
Q 045938 540 -----------------------PTNLHRLEIIDNKK------I-WKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLP 589 (681)
Q Consensus 540 -----------------------~~~L~~L~l~~~~~------~-~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~ 589 (681)
+.++..+.+.+.-. + ..+++|+++++.+| .+..++...+ ...
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n--~i~~I~~~aF------~~~ 249 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT--NATTIPDFTF------AQK 249 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB--CCCEECTTTT------TTC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC--CcceecHhhh------hCC
Confidence 22233333333211 0 13677888888776 5667776655 456
Q ss_pred cccceeEecccCCcccccc-cccCCCCCC-EEeecCCCCCcccCCCCC--cccccEEEeCCc
Q 045938 590 ACLASLMIGNFPNLERLSS-SIVDLQNLT-HLELEDCPKLKYFPEKGL--PSSLLQLYIGGC 647 (681)
Q Consensus 590 ~~L~~l~l~~~~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c 647 (681)
.+|+++++.+ +++.|+. .|..+++|+ .+++.+ .++.++...+ +++|+.|++.++
T Consensus 250 ~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 250 KYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred CCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 6777777776 3777765 566777787 888876 5777776544 567788777653
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=5.5e-10 Score=104.00 Aligned_cols=114 Identities=15% Similarity=0.090 Sum_probs=96.2
Q ss_pred CCCCCcEEEEcCCCCchhHHH-hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938 419 LPPSLKSLDVWSCSELESIAE-RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR 497 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 497 (681)
++.++++|++++|.+....+. .++.+++|++|++++|.+.+..|..++++++|++|++++|......+..+..+++|++
T Consensus 27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 344699999999976554432 3889999999999999999888899999999999999999855444555778999999
Q ss_pred EeeccccccccccccCcccCCcceeeecccCCCCC
Q 045938 498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS 532 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~ 532 (681)
|++++|......|..+..+++|++|++++|+...+
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99999997777788899999999999999986654
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1e-09 Score=100.67 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=55.5
Q ss_pred CCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccCCcceee
Q 045938 445 TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLT 523 (681)
Q Consensus 445 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 523 (681)
++|++|++++|.+.+..+..++++++|++|++++|. +..++. .+..+++|++|++++|......+..+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 455555555555544434444555666666666554 233333 234555666666666554333333345566666666
Q ss_pred ecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938 524 IGEGGELPSLEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 524 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 553 (681)
+++|...+..+..+..+++|++|++++|..
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 666654433233344555555555555544
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=1.3e-09 Score=101.42 Aligned_cols=82 Identities=15% Similarity=0.025 Sum_probs=37.6
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
++++|++++|.+. .+|..+..+++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4555555555432 334445555555555555555544444444445555555555444222112223334444444444
Q ss_pred ccc
Q 045938 502 YCK 504 (681)
Q Consensus 502 ~~~ 504 (681)
+|.
T Consensus 111 ~N~ 113 (193)
T 2wfh_A 111 GND 113 (193)
T ss_dssp SSC
T ss_pred CCC
Confidence 443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=2e-09 Score=100.09 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=99.9
Q ss_pred cEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccc
Q 045938 424 KSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYC 503 (681)
Q Consensus 424 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 503 (681)
+.++++++. +..+|..+ .++|++|++++|.+. .+|..+.++++|+.|++++|......+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSC-CSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCC-CCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456666664 33455433 368999999999886 56678899999999999998854433446778999999999999
Q ss_pred cccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938 504 KRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 504 ~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 553 (681)
......+..+..+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 97666666789999999999999987655555688899999999999986
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=2.9e-10 Score=104.28 Aligned_cols=124 Identities=20% Similarity=0.165 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCchhHHHhcccCC-CccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCC-CCCCCcceEe
Q 045938 422 SLKSLDVWSCSELESIAERLDNNT-SLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGG-LPCAKLTRLE 499 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~ 499 (681)
+|++|++++|... .++ .+..+. +|++|++++|.+.+. ..++.+++|++|++++|. +..++... ..+++|++|+
T Consensus 20 ~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp SCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEE
T ss_pred CceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEE
Confidence 3777777777544 333 233433 777777777766653 456667777777777766 33455443 5566777777
Q ss_pred eccccccccccc--cCcccCCcceeeecccCCCCCccc----cCCCCCCCceeeeecCc
Q 045938 500 ISYCKRLQVLPK--GLHNLTSLQQLTIGEGGELPSLEE----DDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 500 l~~~~~l~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~ 552 (681)
+++|.. ..+|. .+..+++|+.|++++|+.. .++. .++.+++|+.|++++|.
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 777663 44554 5666677777777776543 2332 14444555555554443
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=3.4e-09 Score=97.19 Aligned_cols=113 Identities=20% Similarity=0.129 Sum_probs=90.8
Q ss_pred CCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceE
Q 045938 420 PPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRL 498 (681)
Q Consensus 420 p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 498 (681)
++++++|++++|...+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.. ..++. .+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc-cccCHHHhhCCcccCEE
Confidence 34699999999977655455678999999999999998877667788999999999999874 45554 45678999999
Q ss_pred eeccccccccccc-cCcccCCcceeeecccCCCCCcc
Q 045938 499 EISYCKRLQVLPK-GLHNLTSLQQLTIGEGGELPSLE 534 (681)
Q Consensus 499 ~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~ 534 (681)
++++|... .+|. .+..+++|+.|++++|+.....+
T Consensus 106 ~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 106 ALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999855 5555 45789999999999998665443
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=1e-09 Score=100.59 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=91.3
Q ss_pred hcccCCCccEEEeecccCcccccCcCcCc-ccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccC-cccC
Q 045938 440 RLDNNTSLETISISECENLKILPSGLHNL-RQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGL-HNLT 517 (681)
Q Consensus 440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l-~~l~ 517 (681)
.+.++++|++|++++|.+.. ++. +..+ ++|+.|++++|. +..+ ..+..+++|++|++++|... .+|..+ ..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 35678899999999998874 344 4444 499999999987 4455 56788899999999999854 555544 8899
Q ss_pred CcceeeecccCCCCCccc--cCCCCCCCceeeeecCcc----------cccCCcccEEEEecc
Q 045938 518 SLQQLTIGEGGELPSLEE--DDGLPTNLHRLEIIDNKK----------IWKFSSLRQLTISGC 568 (681)
Q Consensus 518 ~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~----------~~~l~~L~~L~l~~~ 568 (681)
+|++|++++|.. +.++. .++.+++|++|++++|.. ++.+++|+.|++++|
T Consensus 89 ~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 89 DLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999999975 45554 567777777777777764 234566666666654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.85 E-value=2.3e-11 Score=114.05 Aligned_cols=137 Identities=16% Similarity=0.208 Sum_probs=102.8
Q ss_pred CcEEEEcCCC-CchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 423 LKSLDVWSCS-ELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
++...+.+.. ..+.++..+..+++|++|++++|.+.+ +| .+.++++|+.|++++|. +..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence 5566665542 234455678899999999999998776 55 78889999999999886 55677655566899999999
Q ss_pred cccccccccccCcccCCcceeeecccCCCCCcc-ccCCCCCCCceeeeecCcc-----------------cccCCcccEE
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLE-EDDGLPTNLHRLEIIDNKK-----------------IWKFSSLRQL 563 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~-----------------~~~l~~L~~L 563 (681)
+|.. ..+| .+..+++|+.|++++|......+ ..+..+++|++|++++|.. +..+++|+.|
T Consensus 102 ~N~l-~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YNQI-ASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEC-CCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCcC-CcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 9874 4465 57788999999999987554221 3477888899999988875 3467777777
Q ss_pred E
Q 045938 564 T 564 (681)
Q Consensus 564 ~ 564 (681)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.85 E-value=3e-07 Score=95.68 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCc-----ccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCc
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENL-----KILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKL 495 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L 495 (681)
+|+.+.+..+ ....-...+.++++|+.+++.++... ......|.++++|+.+.+... +..++. .+..|++|
T Consensus 249 ~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 249 GITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKV 325 (401)
T ss_dssp CCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSC
T ss_pred CccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCc
Confidence 3777777543 22222355777777888777766543 233455677777887777732 455554 34456777
Q ss_pred ceEeeccccccccc-cccCcccCCcceeeecccCCCC
Q 045938 496 TRLEISYCKRLQVL-PKGLHNLTSLQQLTIGEGGELP 531 (681)
Q Consensus 496 ~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~ 531 (681)
+.+++..+ +..+ ...+..+ +|+.+.+.++....
T Consensus 326 ~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 326 TQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred cEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 77777553 3333 3355666 77777777765433
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=3.9e-07 Score=94.82 Aligned_cols=169 Identities=13% Similarity=0.080 Sum_probs=89.6
Q ss_pred CCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccc-cccCcccCCcceee
Q 045938 445 TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVL-PKGLHNLTSLQQLT 523 (681)
Q Consensus 445 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~ 523 (681)
.+|+.+.+..+ ........|.++++|+.+++..+ +..++...+.-.+|+.+.+.++ +..+ ...+..|++|+.+.
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEE
Confidence 45555555422 22223344555666666666542 3445544443356666666332 2333 33555666666666
Q ss_pred ecccCCC-----CCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEec
Q 045938 524 IGEGGEL-----PSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIG 598 (681)
Q Consensus 524 l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~ 598 (681)
+.++... ..-...|..|++|+.+++. + .+..++...+ ....+|+++.+.
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-----------------~---~i~~I~~~aF------~~c~~L~~l~lp 331 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-----------------E---SIRILGQGLL------GGNRKVTQLTIP 331 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCC-----------------T---TCCEECTTTT------TTCCSCCEEEEC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeC-----------------C---ceEEEhhhhh------cCCCCccEEEEC
Confidence 6555432 1112234444444444443 2 2333433332 234556666664
Q ss_pred ccCCcccccc-cccCCCCCCEEeecCCCCCcccCCCC---CcccccEEEeCCch
Q 045938 599 NFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKG---LPSSLLQLYIGGCP 648 (681)
Q Consensus 599 ~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~ 648 (681)
+ +++.++. .|..+ +|+.+++.++ ....++... +...+..|++-...
T Consensus 332 ~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 332 A--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp T--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred c--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 3 4666654 56778 9999999987 566666543 34678899988743
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.82 E-value=2.2e-07 Score=96.94 Aligned_cols=205 Identities=11% Similarity=0.020 Sum_probs=125.5
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|+.+.+.... .......+.++.+|+.+.+..+ ........+.++..|+.+.+.... ..+......+.+|+.+.+..
T Consensus 164 L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~ 239 (394)
T 4fs7_A 164 LEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPD 239 (394)
T ss_dssp CCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECT
T ss_pred CcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECC
Confidence 6666665431 1112234666777777777554 222233445666777777665433 23444455556777777754
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc----cccCCcccEEEEeccCCCCcCCCcc
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK----IWKFSSLRQLTISGCDDDMVSFPPE 578 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~l~~L~~L~l~~~~~~~~~l~~~ 578 (681)
.. ...-...+..+..++.+.+..+. .......+..+..++.+....... +..+.+|+.+.+.+ .+..++..
T Consensus 240 ~~-~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~---~i~~I~~~ 314 (394)
T 4fs7_A 240 SF-TELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD---SVKFIGEE 314 (394)
T ss_dssp TC-CEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT---TCCEECTT
T ss_pred Cc-eecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeecccccccccccccccccc---ccceechh
Confidence 32 12222345667777777776543 222223466677777776655433 44678888888866 35556655
Q ss_pred ccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCCCC--cccccEEEeCC
Q 045938 579 DIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKGL--PSSLLQLYIGG 646 (681)
Q Consensus 579 ~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~ 646 (681)
.+ ....+|+++.+.+ .++.|+. .|..+++|+.+.+..+ ++.+...++ .++|+.+++.+
T Consensus 315 aF------~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AF------ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TT------TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred hh------cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 44 4556788888864 5777765 6778899999999763 788887655 57899998864
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.81 E-value=6.1e-10 Score=125.50 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938 418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR 497 (681)
Q Consensus 418 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 497 (681)
.++. |++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|. +..+|..+..+++|+.
T Consensus 245 ~l~~-L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 245 KYDF-LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQF 320 (727)
T ss_dssp GCCS-CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCC
T ss_pred CCCC-CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccE
Confidence 3444 777777776554 55666677777777777777666 456667777777777777665 4466666666777777
Q ss_pred EeeccccccccccccCcccC-CcceeeecccCCCCCccccCCCCCCCceeeeecC
Q 045938 498 LEISYCKRLQVLPKGLHNLT-SLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDN 551 (681)
Q Consensus 498 L~l~~~~~l~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 551 (681)
|++++|.....+|..+..+. .+..+++++|...+.+| ..|+.|+++.|
T Consensus 321 L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 77777766555555443322 12235566666554443 34666666666
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=7e-11 Score=110.78 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=84.8
Q ss_pred HhcccCCCccEEEeecccCcccccC------cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccccccccccc
Q 045938 439 ERLDNNTSLETISISECENLKILPS------GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKG 512 (681)
Q Consensus 439 ~~l~~l~~L~~L~ls~~~~~~~~~~------~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 512 (681)
..+.....++.++++.+.+.+..|. .+..+++|++|++++|. +..+| .+..+++|++|++++|.. ..+|..
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~ 88 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLI-KKIENL 88 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEE-CSCSSH
T ss_pred HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCc-ccccch
Confidence 3455666777777777777666555 67778889999998876 44566 566778888888888874 467776
Q ss_pred CcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEecc
Q 045938 513 LHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISGC 568 (681)
Q Consensus 513 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~~ 568 (681)
+..+++|++|++++|...+ ++. ++.+++|++|++++|.+ +..+++|++|++++|
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred hhcCCcCCEEECcCCcCCc-CCc-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 6677888888888886443 443 55566666666666654 224455555555554
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.77 E-value=6.1e-09 Score=113.60 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=68.5
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|+.|++++|.+.+ +|. ++.+++|++|++++|.+. .+|..++++++|+.|++++|. +..+| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCC
Confidence 6777777765443 443 677777777777777666 556667777777777777766 33465 566667777777777
Q ss_pred ccccccc-cccCcccCCcceeeecccCCCC
Q 045938 503 CKRLQVL-PKGLHNLTSLQQLTIGEGGELP 531 (681)
Q Consensus 503 ~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~ 531 (681)
|...... |..++.+++|+.|++++|...+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 7644433 6667777777777777776443
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.76 E-value=6.1e-09 Score=117.38 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=51.2
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
|+.|++++|.+. .++..+..+++|++|+|++|.+. .+|..++++++|++|++++|.. ..+|..+..+++|++|++++
T Consensus 226 L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 226 WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCSEEECCS
T ss_pred CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCCEEECCC
Confidence 555555544332 33334444555555555555444 3444444455555555554442 24444444444555555555
Q ss_pred ccccccccccCcccCCcceeeecccCCCCCccc
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE 535 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 535 (681)
|. +..+|..++.+++|+.|++++|...+.+|.
T Consensus 303 N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 303 NM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp SC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CC-CCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 43 234444444555555555555544444333
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=2.6e-06 Score=88.82 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=37.6
Q ss_pred cccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeecccccccccc-ccCcccCC
Q 045938 441 LDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLP-KGLHNLTS 518 (681)
Q Consensus 441 l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~ 518 (681)
+..+.+|+.+.+.++ ........+.++.+|+.+++... +..+.. .+..|.+|+.+.+..+ +..+. ..+.+|++
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTT
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCC
Confidence 444555555555432 22222334555555666655422 334433 3334556666655443 22232 24455556
Q ss_pred cceeeecc
Q 045938 519 LQQLTIGE 526 (681)
Q Consensus 519 L~~L~l~~ 526 (681)
|+.+++..
T Consensus 368 L~~i~lp~ 375 (394)
T 4fs7_A 368 LKKVELPK 375 (394)
T ss_dssp CCEEEEEG
T ss_pred CCEEEECC
Confidence 66655543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=6.1e-08 Score=88.00 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=43.0
Q ss_pred CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCC-CCCCCCcceEeec
Q 045938 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG-GLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~ 501 (681)
.++++++++.. ..+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|. +..++.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 45555555432 2233222 2445555555555444444444445555555555444 2233322 2334444444444
Q ss_pred cccccccccccCcccCCcceeeecccC
Q 045938 502 YCKRLQVLPKGLHNLTSLQQLTIGEGG 528 (681)
Q Consensus 502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~ 528 (681)
+|......+..+..+++|+.|++++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 444222222223344444444444443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=5.9e-08 Score=88.05 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEee
Q 045938 422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEI 500 (681)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 500 (681)
++++|++++|.+.+..+..+..+++|++|++++|.+....+..+.++++|++|++++|. +..++. .+..+++|+.|++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEe
Confidence 35555555554444334444555555555555555444434344445555555555544 223332 2344455555555
Q ss_pred cccc
Q 045938 501 SYCK 504 (681)
Q Consensus 501 ~~~~ 504 (681)
++|+
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5544
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.60 E-value=1.8e-07 Score=85.20 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=44.8
Q ss_pred cEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCC-CCCCCCcceEeecc
Q 045938 424 KSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG-GLPCAKLTRLEISY 502 (681)
Q Consensus 424 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~ 502 (681)
+.++++++.. +.+|..+. ++|++|++++|.+.+..|..++++++|++|++++|. +..++.. +..+++|++|++++
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 4555555432 33333222 455555555555554444445555555555555543 2333332 23444455555544
Q ss_pred ccccccccc-cCcccCCcceeeecccC
Q 045938 503 CKRLQVLPK-GLHNLTSLQQLTIGEGG 528 (681)
Q Consensus 503 ~~~l~~~~~-~l~~l~~L~~L~l~~~~ 528 (681)
|... .+|. .+..+++|+.|++++|+
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCC
Confidence 4422 2222 23444444444444443
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.59 E-value=8.6e-08 Score=87.29 Aligned_cols=83 Identities=16% Similarity=0.058 Sum_probs=35.8
Q ss_pred ccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccc-cCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938 469 RQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPK-GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE 547 (681)
Q Consensus 469 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 547 (681)
++|+.|++++|......+..+..+++|++|++++|.. ..+|. .+..+++|+.|++++|......+..++.+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 4455555554442222233344444555555555442 22322 234445555555555443322222244445555555
Q ss_pred eecCc
Q 045938 548 IIDNK 552 (681)
Q Consensus 548 l~~~~ 552 (681)
+++|.
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 55544
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.46 E-value=1.4e-08 Score=104.68 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCchhHHHhcc-----cCCCccEEEeecccCcccccCcC-cCcccccEEeeccCCCcee----cCCCC-CC
Q 045938 423 LKSLDVWSCSELESIAERLD-----NNTSLETISISECENLKILPSGL-HNLRQLQEIGIWECENLVS----FPQGG-LP 491 (681)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~ls~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~----l~~~~-~~ 491 (681)
|++|++++|.+.......+. ..++|++|++++|.+.......+ ..+++|+.|++++|..... +...+ ..
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence 66666666655443222222 22566666666666543322222 2345666666666653211 11111 12
Q ss_pred CCCcceEeeccccccc----cccccCcccCCcceeeecccCCCCC----ccccCCCCCCCceeeeecCcc----------
Q 045938 492 CAKLTRLEISYCKRLQ----VLPKGLHNLTSLQQLTIGEGGELPS----LEEDDGLPTNLHRLEIIDNKK---------- 553 (681)
Q Consensus 492 ~~~L~~L~l~~~~~l~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~---------- 553 (681)
.++|++|++++|.... .++..+..+++|++|++++|..... +...+..+++|++|++++|.+
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 3467777777765432 1233344566677777776653321 223344555666666666665
Q ss_pred -cccCCcccEEEEecc
Q 045938 554 -IWKFSSLRQLTISGC 568 (681)
Q Consensus 554 -~~~l~~L~~L~l~~~ 568 (681)
+...++|++|+|++|
T Consensus 234 ~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 234 AAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHCSSCCEEECTTS
T ss_pred HHHhCCCCCEEeccCC
Confidence 113466677777665
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.36 E-value=6e-07 Score=91.68 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=88.1
Q ss_pred cccCCCccEEEeecccCc---------ccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccc
Q 045938 441 LDNNTSLETISISECENL---------KILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPK 511 (681)
Q Consensus 441 l~~l~~L~~L~ls~~~~~---------~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 511 (681)
...+++|+.|.+.+.... ..+...+..+|+|+.|.+++|..+ .++. + ..++|+.|++..|........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 445667777776543211 112223345677888888766333 2333 2 356788888877664332222
Q ss_pred cC--cccCCcceeeecccCC-------CCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938 512 GL--HNLTSLQQLTIGEGGE-------LPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL 582 (681)
Q Consensus 512 ~l--~~l~~L~~L~l~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~ 582 (681)
.+ ..+++|+.|+++.+.. ...+...+. ...+|+|+.|++.+|. +.. .....
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~---------------~~~~p~Lr~L~L~~~~--i~~---~~~~~ 271 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS---------------KDRFPNLKWLGIVDAE--EQN---VVVEM 271 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC---------------TTTCTTCCEEEEESCT--THH---HHHHH
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHh---------------cCCCCCcCEEeCCCCC--Cch---HHHHH
Confidence 22 2577888887753211 111111111 0134555555555541 110 00000
Q ss_pred ccCCCcccccceeEecccCCccc-----ccccccCCCCCCEEeecCCCCCcccCCCCCcccc-cEEEeCCch
Q 045938 583 RTTLPLPACLASLMIGNFPNLER-----LSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSL-LQLYIGGCP 648 (681)
Q Consensus 583 ~~~~~~~~~L~~l~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L-~~L~i~~c~ 648 (681)
....+..++|++|+++.+ .+.. +...+..+++|+.|++++|. +..--...+...+ -.+++++..
T Consensus 272 la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHHHCCSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHHHcCCEEEecCCc
Confidence 001124456666666542 3432 44455678899999998873 3321111111112 457777655
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=5.3e-08 Score=100.34 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=106.5
Q ss_pred CcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhc-ccCCCccEEEeecccCcccccCc
Q 045938 386 LLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERL-DNNTSLETISISECENLKILPSG 464 (681)
Q Consensus 386 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~ls~~~~~~~~~~~ 464 (681)
+|++|++++|. ++.. . ...+... +...+.+|++|++++|.+.......+ ..+++|++|++++|.+.+.....
T Consensus 73 ~L~~L~Ls~n~-l~~~-~----~~~l~~~-L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 73 SLRQLNLAGVR-MTPV-K----CTVVAAV-LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp TCCEEECTTSC-CCHH-H----HHHHHHH-HSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred hCCEEEecCCC-CCHH-H----HHHHHHH-HhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 58888888854 3320 0 0011110 22233459999999998765544333 34678999999999886543333
Q ss_pred C-----cCcccccEEeeccCCCce----ecCCCCCCCCCcceEeeccccccc----cccccCcccCCcceeeecccCCCC
Q 045938 465 L-----HNLRQLQEIGIWECENLV----SFPQGGLPCAKLTRLEISYCKRLQ----VLPKGLHNLTSLQQLTIGEGGELP 531 (681)
Q Consensus 465 l-----~~l~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~~~l~----~~~~~l~~l~~L~~L~l~~~~~~~ 531 (681)
+ ...++|++|++++|.... .+...+..+++|++|++++|.... .++..+...++|++|++++|....
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 2 235789999999987432 233334457789999999998543 234456677899999999997653
Q ss_pred C----ccccCCCCCCCceeeeecCcc
Q 045938 532 S----LEEDDGLPTNLHRLEIIDNKK 553 (681)
Q Consensus 532 ~----~~~~~~~~~~L~~L~l~~~~~ 553 (681)
. +...+...++|++|++++|.+
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 2 333355678899999999987
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.26 E-value=1.4e-06 Score=89.10 Aligned_cols=82 Identities=16% Similarity=0.070 Sum_probs=56.1
Q ss_pred CcEEEEcC-CCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938 423 LKSLDVWS-CSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS 501 (681)
Q Consensus 423 L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 501 (681)
|++|++++ |.+....+..+.++++|++|+|++|.+.+..|..|.++++|+.|++++|. +..+|...+....|+.|++.
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECC
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEee
Confidence 77788875 65544444567777888888888877777667777777788888887776 44555544433347777777
Q ss_pred cccc
Q 045938 502 YCKR 505 (681)
Q Consensus 502 ~~~~ 505 (681)
+|..
T Consensus 112 ~N~~ 115 (347)
T 2ifg_A 112 GNPL 115 (347)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7764
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=1.2e-06 Score=89.47 Aligned_cols=61 Identities=25% Similarity=0.241 Sum_probs=30.8
Q ss_pred CCCCCcEEEEcCCCCchhHHHhc---ccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCC
Q 045938 419 LPPSLKSLDVWSCSELESIAERL---DNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECE 480 (681)
Q Consensus 419 ~p~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~ 480 (681)
+|. |+.|++.+|.+....+..+ ..+++|++|+++.|.+.+. ++..+.++++|+.|++++|.
T Consensus 251 ~p~-Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPN-LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTT-CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCC-cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 444 7777777776654433222 2455666666665554432 22223334555555555443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.21 E-value=0.00022 Score=74.01 Aligned_cols=123 Identities=17% Similarity=0.219 Sum_probs=71.8
Q ss_pred HhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeecccccccccc-ccCccc
Q 045938 439 ERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLP-KGLHNL 516 (681)
Q Consensus 439 ~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l 516 (681)
..+.++..|+.+.+.+... ......+.++++|+.+.+.. .+..++. .+..|.+|+.+.+..+ +..+. ..+..|
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C 333 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCC
Confidence 3466777788777754322 23344566778888888763 2445555 4456778888888653 34443 366778
Q ss_pred CCcceeeecccCCCCCccccCCCCCCCceeeeecCcc----cccCCcccEEEEec
Q 045938 517 TSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK----IWKFSSLRQLTISG 567 (681)
Q Consensus 517 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~l~~L~~L~l~~ 567 (681)
.+|+.+.+..+ ....-..+|..|++|+.+++.++.. +..+..|+.+.+..
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-------
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCC
Confidence 88888888543 2222234577788888888776654 33555666665554
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=1e-06 Score=78.88 Aligned_cols=90 Identities=9% Similarity=0.171 Sum_probs=57.5
Q ss_pred CCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhc---cCCccEEeeeCCcCccc
Q 045938 204 PKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQL---SCILEYIDLRDCQDLVK 280 (681)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~ 280 (681)
..|++|++++|. +++ .....+..+++|+.|++++|..+++ .++..+... +++|++|++++|..+++
T Consensus 61 ~~L~~LDLs~~~-Itd---~GL~~L~~~~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMS---IGFDHMEGLQYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCG---GGGGGGTTCSCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccH---HHHHHhcCCCCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 468888888887 443 2233457888888888888887776 445555432 35677777777765443
Q ss_pred -CCCCCCCCCCcceEEEeCCCCcee
Q 045938 281 -LPQSPLSLSSLREIEIYGCSSLVS 304 (681)
Q Consensus 281 -l~~~~~~l~~L~~L~L~~~~~l~~ 304 (681)
--..+.++++|++|++++|+.+++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 111234566777777777766655
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.20 E-value=3.1e-06 Score=86.57 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=77.5
Q ss_pred cEEEEcCCCCchhHHHhcccCCCccEEEeec-ccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938 424 KSLDVWSCSELESIAERLDNNTSLETISISE-CENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502 (681)
Q Consensus 424 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~-~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 502 (681)
..++.++++.+..+|. +..+++|++|+|++ |.+....+..++++++|+.|++++|......+..+..+++|+.|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3567776634566777 88889999999986 777777667888899999999998874443444567788999999999
Q ss_pred ccccccccccCcccCCcceeeecccCCCC
Q 045938 503 CKRLQVLPKGLHNLTSLQQLTIGEGGELP 531 (681)
Q Consensus 503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~ 531 (681)
|.. ..+|........|+.|++.+|....
T Consensus 90 N~l-~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NAL-ESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCC-SCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred Ccc-ceeCHHHcccCCceEEEeeCCCccC
Confidence 875 4555544333348888888887543
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=0.00042 Score=71.98 Aligned_cols=100 Identities=13% Similarity=0.206 Sum_probs=64.6
Q ss_pred CCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-c
Q 045938 537 DGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-S 609 (681)
Q Consensus 537 ~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~ 609 (681)
|..+.+|+.+.+..... +.++++|+.+.+.. .+..++...+ ....+|+++.|.+ +++.|.. .
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~---~i~~I~~~aF------~~c~~L~~i~lp~--~v~~I~~~a 329 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS---RITELPESVF------AGCISLKSIDIPE--GITQILDDA 329 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT---TCCEECTTTT------TTCTTCCEEECCT--TCCEECTTT
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC---cccccCceee------cCCCCcCEEEeCC--cccEehHhH
Confidence 55556666666544322 33566777777754 4555665544 3456777777764 4667765 5
Q ss_pred ccCCCCCCEEeecCCCCCcccCCCCC--cccccEEEeCCchh
Q 045938 610 IVDLQNLTHLELEDCPKLKYFPEKGL--PSSLLQLYIGGCPL 649 (681)
Q Consensus 610 ~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 649 (681)
|..+++|+.+.+.. .++.+...++ .++|+.+++.++..
T Consensus 330 F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 330 FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee
Confidence 67788888888864 4777776544 57888888887653
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=1.7e-06 Score=77.41 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=35.5
Q ss_pred CCCCCcceEEEeCCCCceeec--CCCC----CCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccc
Q 045938 286 LSLSSLREIEIYGCSSLVSFP--EVAL----PSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTY 353 (681)
Q Consensus 286 ~~l~~L~~L~L~~~~~l~~~~--~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 353 (681)
.++++|++|++++|..+++.. .++. +++|++|++++|..+++..-..+ ..+++|+.|++++|+.+++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence 455666666666665555421 1111 23566666666665554322222 3456666666666666654
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.92 E-value=0.0021 Score=66.24 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=63.6
Q ss_pred CCCCCcceEeeccccccccc-cccCcccCCcceeeecccCCCCCc-cccCCCCCCCceeeeecCcc------cccCCccc
Q 045938 490 LPCAKLTRLEISYCKRLQVL-PKGLHNLTSLQQLTIGEGGELPSL-EEDDGLPTNLHRLEIIDNKK------IWKFSSLR 561 (681)
Q Consensus 490 ~~~~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~------~~~l~~L~ 561 (681)
..+.+|+.+.+... ...+ ...+..+..|+.+.+..+ +..+ ...+..+.+|+.+.+..+-. +.++++|+
T Consensus 214 ~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 214 SYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCC
T ss_pred ccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccccceeccccccccccccc
Confidence 34445555555432 1222 223445555655555433 1111 22344555555555543321 33566666
Q ss_pred EEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCC
Q 045938 562 QLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEK 633 (681)
Q Consensus 562 ~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~ 633 (681)
.+.+.++ .++.++...+ ....+|+++.+.+ +++.|+. .|.++++|+.+.+.. .++.+...
T Consensus 290 ~i~l~~~--~i~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~ 350 (379)
T 4h09_A 290 KVVMDNS--AIETLEPRVF------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESG 350 (379)
T ss_dssp EEEECCT--TCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTT
T ss_pred ccccccc--ccceehhhhh------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchh
Confidence 6666543 3445554443 3445666666653 4566654 456677777777654 35555543
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.83 E-value=0.0026 Score=65.49 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=37.1
Q ss_pred hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccCC
Q 045938 440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLTS 518 (681)
Q Consensus 440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~ 518 (681)
.+.++..|+.+.+..+ ........+.++.+|+.+.+... +..++. .+..|++|+.+.+.++.....-...+.+|.+
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 3445555555555433 22222333444555555555432 233333 2334555555555543321112224445555
Q ss_pred cceeeec
Q 045938 519 LQQLTIG 525 (681)
Q Consensus 519 L~~L~l~ 525 (681)
|+.+.+.
T Consensus 312 L~~i~lp 318 (379)
T 4h09_A 312 LSSVTLP 318 (379)
T ss_dssp CCEEECC
T ss_pred CCEEEcC
Confidence 5555553
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.22 E-value=3.9e-05 Score=70.26 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=16.6
Q ss_pred CcEEEEcCC-CCchh----HHHhcccCCCccEEEeecccCc
Q 045938 423 LKSLDVWSC-SELES----IAERLDNNTSLETISISECENL 458 (681)
Q Consensus 423 L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~ls~~~~~ 458 (681)
|++|++++| .+... +...+...++|++|++++|.+.
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 555555555 43322 2233344455555555555443
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.20 E-value=0.00011 Score=67.27 Aligned_cols=114 Identities=14% Similarity=0.037 Sum_probs=47.4
Q ss_pred HhcccCCCccEEEeecc-cCccc----ccCcCcCcccccEEeeccCCCce----ecCCCCCCCCCcceEeecccccccc-
Q 045938 439 ERLDNNTSLETISISEC-ENLKI----LPSGLHNLRQLQEIGIWECENLV----SFPQGGLPCAKLTRLEISYCKRLQV- 508 (681)
Q Consensus 439 ~~l~~l~~L~~L~ls~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~~~l~~- 508 (681)
..+...+.|++|++++| .+... +...+...++|++|++++|..-. .+...+...++|++|++++|.....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 33444555555555555 33321 12223334455555555554211 0111122233455555555543221
Q ss_pred ---ccccCcccCCcceeee--cccCCCCC----ccccCCCCCCCceeeeecCc
Q 045938 509 ---LPKGLHNLTSLQQLTI--GEGGELPS----LEEDDGLPTNLHRLEIIDNK 552 (681)
Q Consensus 509 ---~~~~l~~l~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~ 552 (681)
+...+...++|++|++ ++|..... +...+...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 2233444445555555 44443221 12223334455555555554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.14 E-value=6.8e-05 Score=72.35 Aligned_cols=80 Identities=15% Similarity=0.052 Sum_probs=49.5
Q ss_pred ccCCCccEEEeecccCcc--cccCcCcCcccccEEeeccCCCceecCCCCCCCC--CcceEeeccccccccccc------
Q 045938 442 DNNTSLETISISECENLK--ILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCA--KLTRLEISYCKRLQVLPK------ 511 (681)
Q Consensus 442 ~~l~~L~~L~ls~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~--~L~~L~l~~~~~l~~~~~------ 511 (681)
.++++|++|++++|.+.+ .++..+..+++|+.|++++|... .+.. +..+. +|++|++.+|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cchh-hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 467888888888888766 34555667788888888877633 2211 12222 677777777775544432
Q ss_pred -cCcccCCcceee
Q 045938 512 -GLHNLTSLQQLT 523 (681)
Q Consensus 512 -~l~~l~~L~~L~ 523 (681)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 244566666664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.64 E-value=0.00058 Score=65.82 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=58.5
Q ss_pred CCCCCCcEEEEcCCCCch--hHHHhcccCCCccEEEeecccCcccccCcCcCcc--cccEEeeccCCCceecCC------
Q 045938 418 NLPPSLKSLDVWSCSELE--SIAERLDNNTSLETISISECENLKILPSGLHNLR--QLQEIGIWECENLVSFPQ------ 487 (681)
Q Consensus 418 ~~p~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~--~L~~L~l~~~~~l~~l~~------ 487 (681)
.+|. |++|++++|.+.. .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|+....++.
T Consensus 168 ~l~~-L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTT-CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCC-CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4555 9999999998765 4555667899999999999988764 2344444 899999999996654542
Q ss_pred -CCCCCCCcceEee
Q 045938 488 -GGLPCAKLTRLEI 500 (681)
Q Consensus 488 -~~~~~~~L~~L~l 500 (681)
.+..+|+|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2345788888863
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.15 E-value=0.27 Score=41.36 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=15.8
Q ss_pred CCCEEeecCCCCCcccCCCCC--cccccEEEeCCch
Q 045938 615 NLTHLELEDCPKLKYFPEKGL--PSSLLQLYIGGCP 648 (681)
Q Consensus 615 ~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 648 (681)
+|++|++++| .++.++...+ +++|++|++.+||
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 4555555554 4455544322 3445555555543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.40 E-value=0.48 Score=39.75 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=31.3
Q ss_pred CcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCC
Q 045938 587 PLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPK 626 (681)
Q Consensus 587 ~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~ 626 (681)
..+++|+.|+++++ +|+.++. .|..+++|+.|++++||.
T Consensus 28 ~lp~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 28 AFPVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 36678889999884 7888887 457789999999999864
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.63 E-value=0.19 Score=45.52 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=26.6
Q ss_pred CcEEEEcCC-CCchh----HHHhcccCCCccEEEeecccCcccccCc----CcCcccccEEeeccCC
Q 045938 423 LKSLDVWSC-SELES----IAERLDNNTSLETISISECENLKILPSG----LHNLRQLQEIGIWECE 480 (681)
Q Consensus 423 L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~ls~~~~~~~~~~~----l~~l~~L~~L~l~~~~ 480 (681)
|++|+++++ .+.+. +...+..-+.|+.|+|++|.+.+..... +..-+.|++|++++|.
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 566666553 32221 2334445555556666555554322111 2223445555555544
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=83.58 E-value=0.53 Score=42.58 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=45.1
Q ss_pred cccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc----CCCCCCCCCCcceEEEeCCCCcee
Q 045938 229 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK----LPQSPLSLSSLREIEIYGCSSLVS 304 (681)
Q Consensus 229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~l~~ 304 (681)
..-+.|+.|+++++..+..-... .....+ ..-+.|+.|+|++|.+-.. +...+..-+.|++|+|+.|. +++
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~---~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIR---SLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHH---HHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCH
T ss_pred hcCCCccEEECCCCCCCCHHHHH---HHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCH
Confidence 44566777777654333321111 111112 2336677777777765322 22223344667777777654 443
Q ss_pred ec------CCCCCCCceEEEEecC
Q 045938 305 FP------EVALPSKLKKIEIREC 322 (681)
Q Consensus 305 ~~------~~~~~~~L~~L~l~~~ 322 (681)
-. .+..-..|++|+++++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 21 2233456777777754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.09 E-value=86 Score=24.28 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=6.0
Q ss_pred cccCCcceEeec
Q 045938 110 ERFPKLRELHIL 121 (681)
Q Consensus 110 ~~~~~L~~L~l~ 121 (681)
..|.+|+.+.+.
T Consensus 40 ~~C~~L~~i~~~ 51 (100)
T 2lz0_A 40 SGCTALEKLILT 51 (100)
T ss_dssp TTCTTCCCEEEC
T ss_pred hccCCccEEEEc
Confidence 345555555554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.29 E-value=1.3e+02 Score=23.13 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=22.6
Q ss_pred cccccceeEecccCCcccccc-cccCCCCCCEEeecCC
Q 045938 588 LPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDC 624 (681)
Q Consensus 588 ~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c 624 (681)
...+|+++.|-. .++.|.. .|..|.+|+.+.+.+-
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 445555555554 4556654 5677888888888763
Done!