Query 045940
Match_columns 189
No_of_seqs 138 out of 1184
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 1.6E-57 3.5E-62 363.6 20.7 178 5-182 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 4.5E-47 9.8E-52 309.2 18.8 182 3-185 13-198 (205)
3 TIGR00725 conserved hypothetic 100.0 4.6E-44 9.9E-49 281.4 19.2 157 4-179 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 5.2E-41 1.1E-45 256.8 15.5 131 49-179 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.7 3.3E-16 7.3E-21 129.1 17.1 156 5-179 45-220 (220)
6 PF02481 DNA_processg_A: DNA r 99.5 8.7E-13 1.9E-17 108.3 13.2 143 4-156 44-206 (212)
7 PRK10736 hypothetical protein; 99.4 6.1E-12 1.3E-16 110.9 16.6 157 5-180 108-284 (374)
8 COG0758 Smf Predicted Rossmann 99.3 2.2E-10 4.8E-15 100.2 15.0 157 5-180 112-287 (350)
9 PF12694 MoCo_carrier: Putativ 97.4 0.0015 3.3E-08 50.5 9.2 94 39-139 1-99 (145)
10 PF05014 Nuc_deoxyrib_tr: Nucl 95.8 0.031 6.7E-07 40.9 6.0 47 87-139 48-98 (113)
11 PF13528 Glyco_trans_1_3: Glyc 95.7 0.29 6.2E-06 41.3 12.5 125 35-182 192-317 (318)
12 TIGR01133 murG undecaprenyldip 95.1 1.1 2.4E-05 38.0 14.0 75 96-186 246-322 (348)
13 PF06908 DUF1273: Protein of u 95.0 0.38 8.2E-06 38.5 10.1 130 4-138 1-168 (177)
14 PF11071 DUF2872: Protein of u 95.0 0.6 1.3E-05 35.7 10.5 114 50-180 12-137 (141)
15 COG0707 MurG UDP-N-acetylgluco 94.0 3.1 6.7E-05 36.8 14.6 86 85-185 237-324 (357)
16 TIGR03646 YtoQ_fam YtoQ family 93.9 1.5 3.3E-05 33.6 10.6 74 91-180 66-140 (144)
17 cd03785 GT1_MurG MurG is an N- 93.8 3.5 7.6E-05 34.9 14.2 37 92-138 244-280 (350)
18 COG3660 Predicted nucleoside-d 93.5 3.2 7E-05 35.7 13.0 58 96-162 240-298 (329)
19 PRK10565 putative carbohydrate 93.4 0.37 7.9E-06 44.6 8.0 127 35-180 254-384 (508)
20 TIGR01426 MGT glycosyltransfer 93.3 0.96 2.1E-05 39.6 10.2 70 97-184 288-358 (392)
21 PRK13609 diacylglycerol glucos 93.3 1.6 3.4E-05 38.0 11.4 76 89-184 262-337 (380)
22 PRK13660 hypothetical protein; 92.1 4.7 0.0001 32.5 11.7 130 4-137 1-167 (182)
23 PF10686 DUF2493: Protein of u 92.1 1.8 3.9E-05 29.4 8.0 63 5-70 4-67 (71)
24 PF06258 Mito_fiss_Elm1: Mitoc 91.9 7.8 0.00017 33.6 14.1 77 96-181 224-307 (311)
25 PRK13608 diacylglycerol glucos 91.8 2 4.4E-05 37.8 10.3 74 90-183 263-336 (391)
26 PRK12446 undecaprenyldiphospho 91.6 4.9 0.00011 35.1 12.4 32 96-137 248-279 (352)
27 PRK00025 lpxB lipid-A-disaccha 91.5 1.9 4.1E-05 37.2 9.7 31 95-136 256-286 (380)
28 KOG3614 Ca2+/Mg2+-permeable ca 91.5 5.2 0.00011 41.0 13.4 153 5-161 119-326 (1381)
29 TIGR00215 lpxB lipid-A-disacch 91.3 4.1 9E-05 36.0 11.7 77 97-186 264-348 (385)
30 PLN02605 monogalactosyldiacylg 91.2 2.4 5.3E-05 37.1 10.1 71 93-183 275-345 (382)
31 cd03784 GT1_Gtf_like This fami 90.7 2 4.3E-05 37.5 9.1 70 96-182 300-369 (401)
32 PF04101 Glyco_tran_28_C: Glyc 89.6 1 2.2E-05 34.6 5.6 35 95-139 67-101 (167)
33 COG1597 LCB5 Sphingosine kinas 89.0 0.86 1.9E-05 39.3 5.3 47 23-70 45-92 (301)
34 TIGR03590 PseG pseudaminic aci 88.2 6.9 0.00015 33.0 10.2 37 91-138 232-268 (279)
35 TIGR00661 MJ1255 conserved hyp 87.7 16 0.00035 31.1 13.0 104 36-157 189-293 (321)
36 cd03786 GT1_UDP-GlcNAc_2-Epime 86.8 18 0.0004 30.7 13.6 69 92-185 269-337 (363)
37 PRK00726 murG undecaprenyldiph 85.9 21 0.00045 30.5 13.4 81 88-185 240-324 (357)
38 COG4671 Predicted glycosyl tra 85.9 17 0.00037 32.5 11.5 81 89-186 283-366 (400)
39 PRK05749 3-deoxy-D-manno-octul 85.4 25 0.00055 30.9 13.7 82 84-185 304-388 (425)
40 PRK03372 ppnK inorganic polyph 83.0 8.4 0.00018 33.4 8.3 62 1-66 2-102 (306)
41 COG2185 Sbm Methylmalonyl-CoA 82.6 3.9 8.5E-05 31.7 5.5 46 21-67 25-70 (143)
42 COG3613 Nucleoside 2-deoxyribo 80.5 16 0.00034 29.2 8.3 44 90-139 58-107 (172)
43 PRK04539 ppnK inorganic polyph 80.5 12 0.00026 32.3 8.4 63 1-67 2-99 (296)
44 COG1819 Glycosyl transferases, 80.2 32 0.0007 30.8 11.4 90 33-138 235-328 (406)
45 TIGR00196 yjeF_cterm yjeF C-te 79.0 14 0.0003 31.0 8.2 100 34-140 23-128 (272)
46 PRK14569 D-alanyl-alanine synt 78.3 6.1 0.00013 33.6 5.9 40 1-41 1-40 (296)
47 PRK02155 ppnK NAD(+)/NADH kina 77.9 16 0.00034 31.4 8.3 61 2-66 3-93 (291)
48 PRK03378 ppnK inorganic polyph 77.3 17 0.00037 31.3 8.4 62 1-66 2-93 (292)
49 PRK01231 ppnK inorganic polyph 76.5 17 0.00036 31.4 8.1 63 1-67 1-93 (295)
50 PRK00861 putative lipid kinase 74.6 7.1 0.00015 33.1 5.3 43 25-69 46-89 (300)
51 PRK13337 putative lipid kinase 73.9 9 0.0002 32.6 5.8 44 25-69 46-91 (304)
52 PF00781 DAGK_cat: Diacylglyce 73.1 8.5 0.00019 28.4 4.8 40 97-137 48-89 (130)
53 TIGR03702 lip_kinase_YegS lipi 72.7 9.2 0.0002 32.4 5.6 44 25-69 41-88 (293)
54 COG1057 NadD Nicotinic acid mo 72.5 5.7 0.00012 32.3 4.0 34 3-36 1-34 (197)
55 PF00781 DAGK_cat: Diacylglyce 72.1 8.1 0.00018 28.5 4.5 42 27-69 44-90 (130)
56 PRK13055 putative lipid kinase 71.9 9.2 0.0002 33.2 5.5 44 25-69 48-93 (334)
57 PRK13054 lipid kinase; Reviewe 71.1 11 0.00024 32.0 5.7 44 25-69 45-92 (300)
58 PRK11914 diacylglycerol kinase 70.8 61 0.0013 27.5 10.2 28 104-136 67-94 (306)
59 PF05159 Capsule_synth: Capsul 70.1 4.9 0.00011 33.5 3.2 36 96-143 195-230 (269)
60 PRK08105 flavodoxin; Provision 70.0 6.2 0.00014 30.3 3.6 34 4-40 1-34 (149)
61 PRK02645 ppnK inorganic polyph 70.0 8.6 0.00019 33.2 4.8 107 3-157 2-117 (305)
62 TIGR02113 coaC_strep phosphopa 68.9 7.4 0.00016 31.0 3.9 84 99-182 75-176 (177)
63 PRK09004 FMN-binding protein M 68.3 6.3 0.00014 30.1 3.3 34 4-40 1-34 (146)
64 PRK11914 diacylglycerol kinase 68.1 12 0.00027 31.8 5.3 44 24-69 52-96 (306)
65 PF13607 Succ_CoA_lig: Succiny 68.0 43 0.00092 25.5 7.8 65 101-180 55-136 (138)
66 smart00046 DAGKc Diacylglycero 67.6 7.7 0.00017 28.7 3.5 34 104-137 52-85 (124)
67 TIGR00519 asnASE_I L-asparagin 67.1 16 0.00035 32.0 5.9 49 99-150 76-129 (336)
68 COG0593 DnaA ATPase involved i 66.8 27 0.00059 31.6 7.4 104 23-136 96-214 (408)
69 cd03795 GT1_like_4 This family 66.3 21 0.00046 29.6 6.4 75 91-185 254-332 (357)
70 TIGR03492 conserved hypothetic 66.1 97 0.0021 27.5 11.4 36 95-141 291-326 (396)
71 PTZ00032 60S ribosomal protein 65.9 15 0.00032 30.2 5.0 39 22-60 162-208 (211)
72 PRK06029 3-octaprenyl-4-hydrox 65.1 12 0.00025 30.1 4.3 80 100-180 78-167 (185)
73 TIGR00640 acid_CoA_mut_C methy 64.8 27 0.00058 26.4 6.1 46 20-66 14-59 (132)
74 COG1832 Predicted CoA-binding 64.4 8.3 0.00018 29.7 3.2 35 2-41 14-48 (140)
75 PF00861 Ribosomal_L18p: Ribos 64.3 28 0.00061 25.8 6.0 41 22-62 70-118 (119)
76 PRK13609 diacylglycerol glucos 64.3 13 0.00028 32.2 4.8 35 1-38 1-35 (380)
77 COG1063 Tdh Threonine dehydrog 63.8 51 0.0011 28.7 8.5 83 36-121 170-259 (350)
78 PRK07313 phosphopantothenoylcy 63.8 26 0.00057 27.9 6.1 90 97-186 74-181 (182)
79 cd03820 GT1_amsD_like This fam 63.7 29 0.00064 27.9 6.6 75 92-186 244-320 (348)
80 COG3573 Predicted oxidoreducta 63.3 16 0.00035 32.8 5.1 84 37-128 141-245 (552)
81 COG0063 Predicted sugar kinase 63.1 98 0.0021 26.6 12.7 132 34-180 31-168 (284)
82 CHL00200 trpA tryptophan synth 62.4 38 0.00083 28.6 7.2 44 108-156 71-119 (263)
83 PF04127 DFP: DNA / pantothena 62.3 33 0.00072 27.4 6.5 64 39-107 22-89 (185)
84 cd03808 GT1_cap1E_like This fa 62.1 20 0.00043 29.1 5.4 71 95-184 258-328 (359)
85 COG0163 UbiX 3-polyprenyl-4-hy 61.9 18 0.00039 29.3 4.8 79 101-180 81-169 (191)
86 COG1064 AdhP Zn-dependent alco 61.7 52 0.0011 29.1 8.1 140 36-181 168-326 (339)
87 PF01820 Dala_Dala_lig_N: D-al 61.7 12 0.00026 27.5 3.6 36 5-40 1-36 (117)
88 COG0256 RplR Ribosomal protein 61.4 26 0.00056 26.5 5.3 41 21-61 75-123 (125)
89 cd01171 YXKO-related B.subtili 61.3 52 0.0011 26.9 7.7 101 34-141 7-114 (254)
90 KOG3349 Predicted glycosyltran 61.2 81 0.0018 25.0 9.1 122 3-158 2-129 (170)
91 PRK06756 flavodoxin; Provision 61.1 15 0.00033 27.6 4.1 32 4-38 1-32 (148)
92 PF01256 Carb_kinase: Carbohyd 61.0 96 0.0021 25.8 9.8 125 39-181 2-133 (242)
93 PLN02565 cysteine synthase 60.3 1.1E+02 0.0025 26.4 11.6 31 39-69 176-208 (322)
94 cd03804 GT1_wbaZ_like This fam 60.1 24 0.00051 29.8 5.6 75 91-186 252-327 (351)
95 cd00411 Asparaginase Asparagin 60.0 26 0.00056 30.5 5.9 48 100-150 78-130 (323)
96 PRK02645 ppnK inorganic polyph 59.6 58 0.0013 28.1 8.0 28 38-66 60-87 (305)
97 COG0716 FldA Flavodoxins [Ener 59.4 15 0.00032 28.0 3.8 34 4-40 1-34 (151)
98 PRK02649 ppnK inorganic polyph 59.2 59 0.0013 28.2 7.9 59 4-66 1-98 (305)
99 KOG4022 Dihydropteridine reduc 59.2 67 0.0015 26.0 7.5 70 35-111 3-83 (236)
100 PRK09922 UDP-D-galactose:(gluc 59.0 41 0.00088 28.8 7.0 75 92-187 249-326 (359)
101 PF02608 Bmp: Basic membrane p 58.8 35 0.00076 29.1 6.5 58 5-68 162-221 (306)
102 PRK13234 nifH nitrogenase redu 58.7 25 0.00053 30.0 5.5 37 1-41 1-37 (295)
103 PRK12361 hypothetical protein; 58.6 21 0.00046 33.1 5.4 43 25-69 286-329 (547)
104 PRK13057 putative lipid kinase 58.0 23 0.00051 29.8 5.2 31 101-137 51-81 (287)
105 TIGR03088 stp2 sugar transfera 57.9 22 0.00048 30.3 5.1 68 96-184 268-337 (374)
106 KOG4175 Tryptophan synthase al 57.8 45 0.00098 27.7 6.5 33 113-148 78-110 (268)
107 PLN02958 diacylglycerol kinase 57.3 25 0.00053 32.4 5.5 45 24-69 156-207 (481)
108 PRK04183 glutamyl-tRNA(Gln) am 57.2 30 0.00065 31.4 6.0 48 101-151 153-205 (419)
109 TIGR00421 ubiX_pad polyprenyl 57.2 24 0.00053 28.1 4.9 79 100-180 75-164 (181)
110 PLN02586 probable cinnamyl alc 57.1 1.3E+02 0.0028 26.0 10.1 82 37-121 186-268 (360)
111 cd03823 GT1_ExpE7_like This fa 56.7 33 0.00071 28.1 5.8 72 92-184 254-328 (359)
112 cd03825 GT1_wcfI_like This fam 56.6 39 0.00084 28.1 6.3 73 92-185 256-330 (365)
113 PF04016 DUF364: Domain of unk 56.6 27 0.00059 26.8 4.9 74 91-181 53-130 (147)
114 PRK01966 ddl D-alanyl-alanine 56.4 24 0.00052 30.5 5.1 39 1-40 1-39 (333)
115 cd03794 GT1_wbuB_like This fam 56.3 35 0.00076 28.0 5.9 73 92-183 286-363 (394)
116 cd04728 ThiG Thiazole synthase 55.9 1.3E+02 0.0027 25.5 10.8 93 25-138 112-205 (248)
117 TIGR00236 wecB UDP-N-acetylglu 55.9 56 0.0012 28.1 7.3 76 84-184 257-333 (365)
118 cd00587 HCP_like The HCP famil 55.8 21 0.00046 30.3 4.4 152 2-179 92-257 (258)
119 cd02201 FtsZ_type1 FtsZ is a G 55.6 79 0.0017 27.1 8.1 74 27-108 77-154 (304)
120 PRK13057 putative lipid kinase 55.3 27 0.00059 29.4 5.2 43 24-69 39-82 (287)
121 TIGR03575 selen_PSTK_euk L-ser 55.2 46 0.001 29.3 6.7 49 130-181 125-174 (340)
122 cd06259 YdcF-like YdcF-like. Y 55.2 56 0.0012 24.3 6.5 11 102-112 1-11 (150)
123 PRK13059 putative lipid kinase 55.2 32 0.00069 29.2 5.6 33 101-137 57-89 (295)
124 PRK05723 flavodoxin; Provision 55.0 16 0.00035 28.1 3.4 33 5-40 1-33 (151)
125 PF01985 CRS1_YhbY: CRS1 / Yhb 54.4 10 0.00022 26.4 2.0 55 125-181 11-66 (84)
126 cd03822 GT1_ecORF704_like This 54.3 31 0.00067 28.5 5.3 70 92-184 259-333 (366)
127 PRK06130 3-hydroxybutyryl-CoA 54.2 24 0.00053 29.9 4.7 31 1-40 1-31 (311)
128 cd06353 PBP1_BmpA_Med_like Per 53.9 82 0.0018 26.1 7.8 55 5-67 153-207 (258)
129 COG0252 AnsB L-asparaginase/ar 53.9 22 0.00047 31.6 4.4 34 102-138 102-135 (351)
130 TIGR02482 PFKA_ATP 6-phosphofr 53.6 56 0.0012 28.3 6.9 57 8-66 64-121 (301)
131 cd03812 GT1_CapH_like This fam 53.6 32 0.00069 28.6 5.3 71 95-187 261-333 (358)
132 PRK14572 D-alanyl-alanine synt 53.5 28 0.0006 30.3 5.0 40 4-43 1-40 (347)
133 cd03801 GT1_YqgM_like This fam 53.4 36 0.00079 27.4 5.5 70 94-184 269-340 (374)
134 cd05844 GT1_like_7 Glycosyltra 53.3 41 0.00088 28.2 6.0 70 95-185 259-336 (367)
135 PRK12359 flavodoxin FldB; Prov 52.4 39 0.00084 26.7 5.3 21 50-70 102-122 (172)
136 PHA03392 egt ecdysteroid UDP-g 52.3 1.4E+02 0.003 27.7 9.6 133 27-181 286-428 (507)
137 PRK15484 lipopolysaccharide 1, 52.3 57 0.0012 28.4 6.9 72 92-184 268-343 (380)
138 PRK08887 nicotinic acid mononu 51.8 20 0.00042 28.3 3.5 24 4-27 1-24 (174)
139 PRK04885 ppnK inorganic polyph 51.6 97 0.0021 26.2 7.9 56 6-66 2-67 (265)
140 cd03799 GT1_amsK_like This is 51.4 44 0.00094 27.7 5.8 74 92-184 247-326 (355)
141 COG3967 DltE Short-chain dehyd 51.3 20 0.00043 29.9 3.5 29 37-66 7-35 (245)
142 PRK06703 flavodoxin; Provision 51.3 21 0.00046 26.9 3.5 32 4-38 1-32 (151)
143 TIGR03702 lip_kinase_YegS lipi 50.7 98 0.0021 26.1 7.9 33 104-137 55-87 (293)
144 PRK09880 L-idonate 5-dehydroge 50.6 1.5E+02 0.0032 25.2 9.1 30 36-67 171-201 (343)
145 TIGR00147 lipid kinase, YegS/R 50.4 46 0.001 27.9 5.8 31 38-69 60-91 (293)
146 PRK12422 chromosomal replicati 50.4 1.4E+02 0.003 27.2 9.2 93 36-137 142-242 (445)
147 PRK03708 ppnK inorganic polyph 50.3 37 0.0008 28.9 5.2 35 5-42 1-35 (277)
148 PRK00861 putative lipid kinase 50.2 87 0.0019 26.4 7.5 28 104-136 60-87 (300)
149 TIGR03451 mycoS_dep_FDH mycoth 49.9 1.6E+02 0.0036 25.1 10.1 31 36-68 178-209 (358)
150 TIGR01501 MthylAspMutase methy 49.9 64 0.0014 24.6 5.9 45 21-66 14-58 (134)
151 TIGR02153 gatD_arch glutamyl-t 49.6 44 0.00096 30.2 5.8 48 101-150 140-192 (404)
152 cd03819 GT1_WavL_like This fam 48.7 55 0.0012 27.2 6.0 67 94-181 257-326 (355)
153 PF13524 Glyco_trans_1_2: Glyc 48.6 37 0.0008 22.9 4.2 22 165-186 42-63 (92)
154 PF09314 DUF1972: Domain of un 48.5 34 0.00074 27.5 4.4 39 4-42 1-41 (185)
155 cd02072 Glm_B12_BD B12 binding 48.4 1.2E+02 0.0025 23.0 10.1 43 23-66 14-56 (128)
156 PRK13054 lipid kinase; Reviewe 48.4 1.1E+02 0.0024 25.9 7.9 33 104-137 59-91 (300)
157 PRK09271 flavodoxin; Provision 48.3 26 0.00056 26.9 3.6 31 6-39 2-32 (160)
158 TIGR02690 resist_ArsH arsenica 48.3 44 0.00096 27.6 5.2 38 1-39 23-60 (219)
159 PF13380 CoA_binding_2: CoA bi 48.2 42 0.0009 24.5 4.6 31 5-40 1-31 (116)
160 PF00106 adh_short: short chai 48.1 26 0.00056 26.1 3.6 31 37-68 2-32 (167)
161 PRK14077 pnk inorganic polypho 48.0 1E+02 0.0022 26.5 7.5 59 3-66 9-94 (287)
162 PRK14072 6-phosphofructokinase 48.0 72 0.0016 28.9 6.9 55 8-66 73-138 (416)
163 PRK06849 hypothetical protein; 47.7 32 0.00068 30.2 4.5 37 1-45 1-37 (389)
164 PF13692 Glyco_trans_1_4: Glyc 47.7 60 0.0013 23.1 5.4 69 93-182 63-132 (135)
165 cd03818 GT1_ExpC_like This fam 47.3 51 0.0011 28.6 5.8 73 92-185 292-366 (396)
166 PRK08226 short chain dehydroge 47.2 1.3E+02 0.0028 24.1 7.9 37 1-45 1-39 (263)
167 KOG2968 Predicted esterase of 47.2 13 0.00027 37.1 2.0 49 25-75 828-887 (1158)
168 PRK07998 gatY putative fructos 47.1 1.9E+02 0.004 24.9 11.4 95 17-121 109-218 (283)
169 PRK05568 flavodoxin; Provision 47.0 37 0.00081 25.0 4.3 13 129-141 81-93 (142)
170 PRK15427 colanic acid biosynth 47.0 61 0.0013 28.7 6.2 69 95-184 293-369 (406)
171 smart00870 Asparaginase Aspara 46.9 31 0.00067 30.0 4.3 50 100-151 77-131 (323)
172 PRK09461 ansA cytoplasmic aspa 46.9 50 0.0011 28.9 5.6 51 99-151 80-135 (335)
173 PF04007 DUF354: Protein of un 46.9 65 0.0014 28.3 6.3 62 97-181 245-306 (335)
174 PF03492 Methyltransf_7: SAM d 46.8 17 0.00036 31.8 2.6 42 140-181 198-242 (334)
175 PRK13337 putative lipid kinase 46.4 1E+02 0.0023 26.1 7.4 30 104-136 60-89 (304)
176 COG2081 Predicted flavoprotein 46.3 17 0.00038 32.8 2.6 27 38-66 6-32 (408)
177 KOG2467 Glycine/serine hydroxy 46.3 42 0.0009 30.4 4.9 37 23-59 328-374 (477)
178 cd00578 L-fuc_L-ara-isomerases 46.1 2.3E+02 0.0049 25.6 10.3 36 99-139 62-97 (452)
179 PRK14557 pyrH uridylate kinase 45.7 36 0.00078 28.5 4.4 45 1-45 1-54 (247)
180 smart00046 DAGKc Diacylglycero 45.5 54 0.0012 24.0 4.9 31 38-69 52-86 (124)
181 PRK09330 cell division protein 45.5 1.1E+02 0.0024 27.4 7.6 73 28-108 91-167 (384)
182 PRK14568 vanB D-alanine--D-lac 45.4 43 0.00093 29.0 4.9 39 1-40 1-39 (343)
183 COG0794 GutQ Predicted sugar p 45.1 1.7E+02 0.0037 23.9 9.8 88 29-138 32-121 (202)
184 cd04949 GT1_gtfA_like This fam 45.1 49 0.0011 28.1 5.2 70 97-186 275-346 (372)
185 PRK03708 ppnK inorganic polyph 45.0 1.3E+02 0.0028 25.6 7.7 29 36-67 59-87 (277)
186 cd03816 GT1_ALG1_like This fam 44.8 1.2E+02 0.0025 26.9 7.7 74 91-185 305-381 (415)
187 PRK02261 methylaspartate mutas 44.6 1.4E+02 0.0029 22.6 8.1 45 21-66 16-60 (137)
188 PF09152 DUF1937: Domain of un 44.2 41 0.00088 25.2 3.9 39 92-136 71-114 (116)
189 cd00763 Bacterial_PFK Phosphof 44.1 1.1E+02 0.0023 26.7 7.2 56 8-66 65-121 (317)
190 PF14359 DUF4406: Domain of un 44.0 53 0.0012 23.2 4.4 37 92-134 51-90 (92)
191 PRK05671 aspartate-semialdehyd 43.8 35 0.00075 30.0 4.1 15 1-15 1-15 (336)
192 COG0205 PfkA 6-phosphofructoki 43.6 91 0.002 27.6 6.7 57 8-66 67-124 (347)
193 PRK05782 bifunctional sirohydr 43.5 1.9E+02 0.0041 25.5 8.6 68 1-72 3-75 (335)
194 PLN02275 transferase, transfer 43.5 1.7E+02 0.0037 25.2 8.5 70 91-181 297-369 (371)
195 TIGR03449 mycothiol_MshA UDP-N 43.3 65 0.0014 27.8 5.8 42 91-140 293-336 (405)
196 PRK13937 phosphoheptose isomer 43.3 58 0.0012 25.8 5.0 32 18-49 21-52 (188)
197 TIGR00253 RNA_bind_YhbY putati 43.2 61 0.0013 23.2 4.6 53 127-181 13-66 (95)
198 PRK08862 short chain dehydroge 43.1 1.3E+02 0.0028 24.1 7.2 33 5-45 6-38 (227)
199 cd03807 GT1_WbnK_like This fam 43.0 58 0.0012 26.5 5.2 66 96-184 264-331 (365)
200 PF12965 DUF3854: Domain of un 42.7 1.3E+02 0.0028 22.6 6.6 49 5-54 69-124 (130)
201 COG0549 ArcC Carbamate kinase 42.6 72 0.0016 27.8 5.7 27 83-109 208-234 (312)
202 PRK09267 flavodoxin FldA; Vali 42.5 29 0.00063 26.7 3.1 27 4-33 1-27 (169)
203 PRK08569 rpl18p 50S ribosomal 42.4 64 0.0014 26.3 5.1 41 21-61 78-128 (193)
204 PRK13111 trpA tryptophan synth 42.2 1.2E+02 0.0027 25.5 7.1 46 108-157 68-118 (258)
205 cd03798 GT1_wlbH_like This fam 42.0 70 0.0015 25.9 5.5 74 92-186 270-345 (377)
206 PRK02649 ppnK inorganic polyph 42.0 64 0.0014 28.0 5.4 52 100-157 68-126 (305)
207 PRK14571 D-alanyl-alanine synt 41.9 54 0.0012 27.6 4.9 36 6-41 2-37 (299)
208 cd04951 GT1_WbdM_like This fam 41.7 45 0.00097 27.7 4.4 66 95-183 257-324 (360)
209 PRK07454 short chain dehydroge 41.7 1.7E+02 0.0037 23.1 7.7 36 2-45 4-39 (241)
210 cd03814 GT1_like_2 This family 41.5 41 0.0009 27.6 4.1 69 95-184 261-331 (364)
211 PF12831 FAD_oxidored: FAD dep 41.4 21 0.00045 32.0 2.4 28 38-67 2-29 (428)
212 PRK10886 DnaA initiator-associ 41.2 1.8E+02 0.0038 23.4 7.6 113 19-137 25-143 (196)
213 PF05690 ThiG: Thiazole biosyn 40.9 38 0.00082 28.6 3.7 39 94-138 167-205 (247)
214 TIGR02699 archaeo_AfpA archaeo 40.8 1.2E+02 0.0025 24.2 6.3 72 100-179 78-174 (174)
215 PRK08199 thiamine pyrophosphat 40.4 3E+02 0.0066 25.4 10.3 87 24-113 193-283 (557)
216 TIGR00314 cdhA CO dehydrogenas 40.3 1.5E+02 0.0032 29.3 8.0 162 3-181 497-695 (784)
217 KOG1201 Hydroxysteroid 17-beta 40.2 36 0.00078 29.6 3.5 28 35-63 38-65 (300)
218 COG0703 AroK Shikimate kinase 40.1 1E+02 0.0022 24.6 5.9 89 21-111 57-155 (172)
219 PRK00696 sucC succinyl-CoA syn 40.0 2.6E+02 0.0057 24.6 13.0 70 101-181 311-383 (388)
220 CHL00139 rpl18 ribosomal prote 39.9 1.1E+02 0.0023 22.5 5.6 40 22-61 60-107 (109)
221 COG0159 TrpA Tryptophan syntha 39.6 1.1E+02 0.0023 26.2 6.3 109 38-177 21-137 (265)
222 PRK10343 RNA-binding protein Y 39.5 75 0.0016 22.9 4.6 52 128-181 16-68 (97)
223 COG0300 DltE Short-chain dehyd 39.4 1.6E+02 0.0035 25.1 7.3 60 3-70 5-64 (265)
224 cd00363 PFK Phosphofructokinas 39.2 1.1E+02 0.0024 26.8 6.5 55 8-66 65-127 (338)
225 TIGR01753 flav_short flavodoxi 39.2 78 0.0017 22.9 4.9 14 52-65 102-115 (140)
226 TIGR01754 flav_RNR ribonucleot 39.0 43 0.00093 24.9 3.5 37 101-139 51-90 (140)
227 PF00710 Asparaginase: Asparag 39.0 71 0.0015 27.5 5.3 38 99-138 71-108 (313)
228 COG0394 Wzb Protein-tyrosine-p 38.8 1.1E+02 0.0023 23.3 5.7 37 3-43 1-37 (139)
229 COG2085 Predicted dinucleotide 38.8 1E+02 0.0022 25.5 5.8 52 4-66 1-52 (211)
230 PRK01231 ppnK inorganic polyph 38.6 78 0.0017 27.2 5.4 51 101-157 63-120 (295)
231 PF00534 Glycos_transf_1: Glyc 38.5 1.2E+02 0.0026 22.5 6.0 71 91-182 83-155 (172)
232 PF14947 HTH_45: Winged helix- 38.5 26 0.00056 23.7 2.0 40 142-182 33-72 (77)
233 PRK06703 flavodoxin; Provision 38.4 83 0.0018 23.6 5.0 14 52-65 105-118 (151)
234 PRK06973 nicotinic acid mononu 38.3 49 0.0011 27.7 4.0 30 5-34 22-51 (243)
235 KOG0503 Asparaginase [Amino ac 38.3 49 0.0011 29.5 4.1 37 99-138 120-156 (368)
236 cd03805 GT1_ALG2_like This fam 38.3 1.1E+02 0.0024 26.0 6.4 69 95-185 294-364 (392)
237 cd06320 PBP1_allose_binding Pe 38.2 63 0.0014 26.0 4.6 33 7-41 2-34 (275)
238 PRK06194 hypothetical protein; 38.2 2E+02 0.0043 23.5 7.7 32 5-44 7-38 (287)
239 COG2242 CobL Precorrin-6B meth 38.1 79 0.0017 25.6 5.0 122 24-157 23-153 (187)
240 TIGR01205 D_ala_D_alaTIGR D-al 38.0 42 0.00092 28.2 3.7 40 6-45 1-40 (315)
241 PRK01911 ppnK inorganic polyph 37.8 2.2E+02 0.0047 24.5 8.0 59 5-67 1-95 (292)
242 PRK14075 pnk inorganic polypho 37.8 1.3E+02 0.0029 25.1 6.6 53 5-67 1-69 (256)
243 TIGR00060 L18_bact ribosomal p 37.6 1.2E+02 0.0026 22.5 5.6 40 22-61 65-112 (114)
244 PLN02271 serine hydroxymethylt 37.5 90 0.002 29.7 5.9 43 22-64 441-493 (586)
245 PRK01372 ddl D-alanine--D-alan 37.4 57 0.0012 27.3 4.4 36 6-41 6-41 (304)
246 PRK09355 hydroxyethylthiazole 37.3 1.4E+02 0.0031 24.8 6.8 42 96-141 50-94 (263)
247 PRK08589 short chain dehydroge 37.1 2.2E+02 0.0048 23.2 7.9 37 1-45 1-39 (272)
248 PRK07308 flavodoxin; Validated 37.1 48 0.001 24.8 3.5 29 6-37 3-31 (146)
249 cd02191 FtsZ FtsZ is a GTPase 37.1 2.7E+02 0.0059 23.9 8.9 87 15-109 60-155 (303)
250 cd03821 GT1_Bme6_like This fam 37.0 1.2E+02 0.0025 24.8 6.1 70 93-185 274-345 (375)
251 cd03800 GT1_Sucrose_synthase T 37.0 47 0.001 28.1 3.9 70 94-184 296-367 (398)
252 PRK14077 pnk inorganic polypho 36.8 94 0.002 26.6 5.6 52 100-157 64-122 (287)
253 PF13614 AAA_31: AAA domain; P 36.4 77 0.0017 23.4 4.6 33 5-40 1-33 (157)
254 COG1597 LCB5 Sphingosine kinas 36.4 46 0.001 28.6 3.7 31 101-136 58-89 (301)
255 cd01408 SIRT1 SIRT1: Eukaryoti 36.4 1.1E+02 0.0024 25.2 5.9 70 91-179 166-235 (235)
256 PLN02545 3-hydroxybutyryl-CoA 36.3 70 0.0015 26.9 4.8 31 1-40 1-31 (295)
257 PLN02591 tryptophan synthase 36.1 1.7E+02 0.0036 24.6 6.9 40 113-156 62-106 (250)
258 cd06313 PBP1_ABC_sugar_binding 36.0 68 0.0015 26.1 4.5 38 96-138 51-88 (272)
259 PLN02871 UDP-sulfoquinovose:DA 35.8 87 0.0019 28.1 5.5 75 92-184 323-399 (465)
260 PF13407 Peripla_BP_4: Peripla 35.6 64 0.0014 25.7 4.3 39 96-139 51-89 (257)
261 PRK08979 acetolactate synthase 35.2 3.7E+02 0.0081 25.0 10.9 87 24-112 195-284 (572)
262 cd03802 GT1_AviGT4_like This f 35.1 2.1E+02 0.0046 23.3 7.5 68 91-181 234-304 (335)
263 PRK03501 ppnK inorganic polyph 34.9 2.5E+02 0.0054 23.8 7.8 60 4-68 2-72 (264)
264 TIGR00642 mmCoA_mut_beta methy 34.9 68 0.0015 30.7 4.8 42 5-51 547-589 (619)
265 PRK05476 S-adenosyl-L-homocyst 34.7 3.6E+02 0.0077 24.6 9.5 84 38-139 215-299 (425)
266 PRK08105 flavodoxin; Provision 34.7 91 0.002 23.7 4.8 27 39-65 88-120 (149)
267 TIGR01752 flav_long flavodoxin 34.6 1E+02 0.0022 23.7 5.1 21 49-69 100-120 (167)
268 cd06300 PBP1_ABC_sugar_binding 34.6 78 0.0017 25.4 4.6 18 18-35 11-28 (272)
269 TIGR01182 eda Entner-Doudoroff 34.4 2.6E+02 0.0055 22.8 8.2 95 23-122 20-119 (204)
270 PF11834 DUF3354: Domain of un 34.3 91 0.002 21.0 4.1 33 102-140 19-51 (69)
271 PRK05920 aromatic acid decarbo 34.3 75 0.0016 25.9 4.4 79 100-179 93-181 (204)
272 PRK00071 nadD nicotinic acid m 34.2 67 0.0014 25.7 4.1 29 3-31 2-30 (203)
273 PRK14618 NAD(P)H-dependent gly 34.2 77 0.0017 27.1 4.7 32 1-41 1-32 (328)
274 COG0148 Eno Enolase [Carbohydr 34.1 1.5E+02 0.0033 27.0 6.5 70 91-161 318-387 (423)
275 cd00432 Ribosomal_L18_L5e Ribo 34.1 1.6E+02 0.0036 20.8 5.8 39 22-60 56-102 (103)
276 PRK06756 flavodoxin; Provision 34.0 2E+02 0.0043 21.4 8.2 78 98-175 47-133 (148)
277 TIGR02483 PFK_mixed phosphofru 33.9 1.2E+02 0.0026 26.5 5.9 57 8-66 66-123 (324)
278 PLN02564 6-phosphofructokinase 33.6 1.3E+02 0.0028 28.0 6.3 52 8-66 154-211 (484)
279 PF01182 Glucosamine_iso: Gluc 33.6 1.5E+02 0.0032 23.7 6.0 46 96-142 16-62 (199)
280 PRK13059 putative lipid kinase 33.5 87 0.0019 26.5 4.9 38 31-69 51-90 (295)
281 PRK05593 rplR 50S ribosomal pr 33.3 1.4E+02 0.003 22.2 5.3 40 22-61 68-115 (117)
282 PF00290 Trp_syntA: Tryptophan 33.2 73 0.0016 27.0 4.3 40 113-155 70-110 (259)
283 PRK07677 short chain dehydroge 33.2 68 0.0015 25.7 4.1 15 27-41 16-30 (252)
284 COG0112 GlyA Glycine/serine hy 33.1 54 0.0012 29.7 3.6 43 22-64 290-342 (413)
285 PLN02668 indole-3-acetate carb 33.1 38 0.00082 30.5 2.7 40 142-181 255-298 (386)
286 PRK06924 short chain dehydroge 33.0 79 0.0017 25.2 4.4 29 4-40 1-29 (251)
287 PRK14138 NAD-dependent deacety 33.0 85 0.0018 26.1 4.6 71 91-183 169-241 (244)
288 PRK06180 short chain dehydroge 32.9 64 0.0014 26.5 3.9 37 1-45 1-37 (277)
289 PRK14076 pnk inorganic polypho 32.7 2.5E+02 0.0054 26.4 8.2 61 2-66 288-378 (569)
290 PF03358 FMN_red: NADPH-depend 32.7 1E+02 0.0022 22.9 4.7 33 6-39 2-34 (152)
291 PRK07102 short chain dehydroge 32.6 70 0.0015 25.5 4.0 14 169-182 196-209 (243)
292 PLN02496 probable phosphopanto 32.5 51 0.0011 27.1 3.1 87 97-183 93-197 (209)
293 PRK06180 short chain dehydroge 32.5 93 0.002 25.5 4.8 30 37-67 6-35 (277)
294 PLN02945 nicotinamide-nucleoti 32.4 1.3E+02 0.0028 24.8 5.6 39 2-40 19-57 (236)
295 PRK14086 dnaA chromosomal repl 32.4 3.5E+02 0.0076 26.0 9.0 107 21-136 299-416 (617)
296 TIGR01198 pgl 6-phosphoglucono 32.4 2.6E+02 0.0057 22.9 7.5 42 98-142 25-66 (233)
297 PRK12314 gamma-glutamyl kinase 32.3 64 0.0014 27.2 3.8 44 3-47 8-61 (266)
298 PF01202 SKI: Shikimate kinase 32.0 80 0.0017 23.9 4.1 38 27-66 53-91 (158)
299 cd03811 GT1_WabH_like This fam 32.0 1.2E+02 0.0025 24.3 5.3 36 96-139 259-296 (353)
300 PRK05993 short chain dehydroge 32.0 97 0.0021 25.4 4.9 32 1-40 1-32 (277)
301 PRK05569 flavodoxin; Provision 32.0 69 0.0015 23.6 3.6 54 98-151 46-105 (141)
302 TIGR00262 trpA tryptophan synt 31.9 2.4E+02 0.0053 23.6 7.3 41 113-156 70-115 (256)
303 PRK03202 6-phosphofructokinase 31.8 1.3E+02 0.0028 26.2 5.8 56 8-66 66-122 (320)
304 PF10087 DUF2325: Uncharacteri 31.8 1.8E+02 0.0039 20.2 9.5 91 39-151 3-95 (97)
305 TIGR01832 kduD 2-deoxy-D-gluco 31.7 73 0.0016 25.4 4.0 15 27-41 20-34 (248)
306 KOG1584 Sulfotransferase [Gene 31.7 98 0.0021 26.9 4.9 60 108-186 151-216 (297)
307 PF12641 Flavodoxin_3: Flavodo 31.5 96 0.0021 24.2 4.5 33 5-37 68-100 (160)
308 PRK08264 short chain dehydroge 31.4 2.6E+02 0.0056 21.9 8.9 72 36-110 7-83 (238)
309 cd06309 PBP1_YtfQ_like Peripla 31.4 95 0.0021 25.0 4.7 38 96-138 51-88 (273)
310 PLN02740 Alcohol dehydrogenase 31.3 1.5E+02 0.0032 25.7 6.2 83 36-121 200-289 (381)
311 COG3980 spsG Spore coat polysa 31.3 85 0.0018 27.4 4.3 41 5-45 1-41 (318)
312 TIGR00035 asp_race aspartate r 31.2 2.3E+02 0.0049 23.0 6.9 81 105-186 4-100 (229)
313 PRK05583 ribosomal protein L7A 31.1 1.9E+02 0.0042 20.8 5.7 60 84-151 37-100 (104)
314 KOG1014 17 beta-hydroxysteroid 31.0 64 0.0014 28.2 3.6 50 3-59 47-96 (312)
315 COG1010 CobJ Precorrin-3B meth 30.9 3.3E+02 0.0072 23.0 10.9 107 30-139 66-196 (249)
316 PRK06555 pyrophosphate--fructo 30.9 1.8E+02 0.0039 26.4 6.6 41 25-66 101-147 (403)
317 PRK02155 ppnK NAD(+)/NADH kina 30.7 1.2E+02 0.0027 25.9 5.4 52 100-157 63-121 (291)
318 PRK00208 thiG thiazole synthas 30.7 3.4E+02 0.0073 23.1 13.0 111 5-138 94-205 (250)
319 cd07225 Pat_PNPLA6_PNPLA7 Pata 30.6 53 0.0012 28.3 3.1 31 26-58 5-35 (306)
320 PRK05854 short chain dehydroge 30.5 81 0.0018 26.7 4.2 19 26-44 28-46 (313)
321 cd01412 SIRT5_Af1_CobB SIRT5_A 30.5 1.8E+02 0.0039 23.5 6.2 67 92-179 156-223 (224)
322 cd04261 AAK_AKii-LysC-BS AAK_A 30.4 1.4E+02 0.0031 24.4 5.5 41 10-52 6-48 (239)
323 PRK09496 trkA potassium transp 30.4 3.1E+02 0.0067 24.2 8.1 90 20-111 216-308 (453)
324 PLN00141 Tic62-NAD(P)-related 30.3 1E+02 0.0022 25.0 4.6 11 171-181 206-216 (251)
325 PF04230 PS_pyruv_trans: Polys 30.3 62 0.0014 25.5 3.3 41 99-139 62-108 (286)
326 smart00516 SEC14 Domain in hom 30.1 1.3E+02 0.0029 22.0 5.0 64 113-181 79-146 (158)
327 TIGR02822 adh_fam_2 zinc-bindi 29.9 67 0.0014 27.4 3.6 31 36-68 167-197 (329)
328 COG0061 nadF NAD kinase [Coenz 29.9 80 0.0017 26.8 4.1 47 104-155 58-107 (281)
329 PRK08265 short chain dehydroge 29.9 1.1E+02 0.0024 24.8 4.8 32 1-40 1-34 (261)
330 PRK09004 FMN-binding protein M 29.5 1.3E+02 0.0029 22.7 4.9 9 57-65 110-118 (146)
331 PRK12939 short chain dehydroge 29.4 1.2E+02 0.0025 24.0 4.8 32 1-40 2-35 (250)
332 PRK09291 short chain dehydroge 29.2 90 0.002 24.9 4.1 32 5-44 3-34 (257)
333 cd00458 SugarP_isomerase Sugar 29.2 2.7E+02 0.0058 21.5 7.6 45 97-142 16-60 (169)
334 PRK14071 6-phosphofructokinase 29.1 1.9E+02 0.0042 25.6 6.4 42 24-66 95-137 (360)
335 cd04962 GT1_like_5 This family 29.1 1.2E+02 0.0026 25.4 5.0 38 95-140 265-304 (371)
336 PRK07035 short chain dehydroge 28.9 85 0.0018 25.1 3.9 15 27-41 23-37 (252)
337 cd08281 liver_ADH_like1 Zinc-d 28.9 3.7E+02 0.0081 23.0 8.3 31 36-68 193-224 (371)
338 PF03853 YjeF_N: YjeF-related 28.7 1.6E+02 0.0035 22.7 5.4 10 129-138 130-139 (169)
339 PRK08339 short chain dehydroge 28.7 87 0.0019 25.6 4.0 15 27-41 23-37 (263)
340 PLN02884 6-phosphofructokinase 28.6 1.7E+02 0.0037 26.6 6.1 52 8-66 121-178 (411)
341 COG0703 AroK Shikimate kinase 28.6 1.9E+02 0.0042 23.0 5.8 33 101-139 72-104 (172)
342 cd08233 butanediol_DH_like (2R 28.6 3.6E+02 0.0078 22.7 8.6 30 36-67 174-204 (351)
343 PRK12367 short chain dehydroge 28.6 91 0.002 25.5 4.1 31 36-67 15-45 (245)
344 PRK07530 3-hydroxybutyryl-CoA 28.4 1.1E+02 0.0024 25.6 4.7 31 1-40 1-31 (292)
345 cd07227 Pat_Fungal_NTE1 Fungal 28.3 46 0.00099 28.3 2.3 30 27-58 1-30 (269)
346 TIGR01127 ilvA_1Cterm threonin 28.3 4E+02 0.0088 23.2 9.1 34 35-69 149-184 (380)
347 cd00170 SEC14 Sec14p-like lipi 28.3 82 0.0018 22.6 3.5 62 115-181 83-147 (157)
348 PRK06398 aldose dehydrogenase; 28.3 1.3E+02 0.0029 24.3 5.0 33 1-41 1-35 (258)
349 COG2984 ABC-type uncharacteriz 28.2 2.6E+02 0.0057 24.6 6.9 61 3-66 158-218 (322)
350 PF03205 MobB: Molybdopterin g 28.2 1.6E+02 0.0034 22.2 5.1 58 5-67 1-64 (140)
351 cd03132 GATase1_catalase Type 28.2 2.4E+02 0.0052 20.6 6.4 37 102-139 64-104 (142)
352 PF00258 Flavodoxin_1: Flavodo 28.1 67 0.0014 23.6 3.0 36 5-41 88-123 (143)
353 PRK12746 short chain dehydroge 28.1 1.2E+02 0.0027 24.1 4.8 30 5-42 7-36 (254)
354 PRK14046 malate--CoA ligase su 28.0 4.4E+02 0.0095 23.5 13.1 114 41-181 262-383 (392)
355 PRK05867 short chain dehydroge 28.0 3.1E+02 0.0067 21.8 7.4 54 5-66 10-63 (253)
356 PRK08217 fabG 3-ketoacyl-(acyl 27.9 93 0.002 24.6 4.0 28 38-66 8-35 (253)
357 KOG1207 Diacetyl reductase/L-x 27.8 91 0.002 25.5 3.8 30 37-67 9-38 (245)
358 PRK12481 2-deoxy-D-gluconate 3 27.7 90 0.0019 25.2 3.9 18 25-42 21-38 (251)
359 PRK08177 short chain dehydroge 27.7 1.1E+02 0.0024 24.0 4.4 32 4-43 1-32 (225)
360 TIGR01127 ilvA_1Cterm threonin 27.7 2.9E+02 0.0064 24.1 7.4 22 102-123 307-328 (380)
361 PRK05057 aroK shikimate kinase 27.6 2.9E+02 0.0062 21.3 10.5 93 26-121 64-165 (172)
362 PRK07152 nadD putative nicotin 27.5 84 0.0018 27.3 3.9 29 5-33 1-29 (342)
363 cd06318 PBP1_ABC_sugar_binding 27.5 1.2E+02 0.0027 24.3 4.7 38 96-138 51-88 (282)
364 KOG4321 Predicted phosphate ac 27.4 59 0.0013 26.3 2.6 30 91-120 68-97 (279)
365 cd06311 PBP1_ABC_sugar_binding 27.4 1.5E+02 0.0032 23.8 5.2 38 96-138 56-93 (274)
366 PRK05723 flavodoxin; Provision 27.4 1.3E+02 0.0028 23.0 4.5 35 6-40 86-120 (151)
367 PF03486 HI0933_like: HI0933-l 27.3 39 0.00085 30.4 1.8 26 38-65 3-28 (409)
368 cd01400 6PGL 6PGL: 6-Phosphogl 27.3 2.7E+02 0.0058 22.5 6.6 44 97-142 19-62 (219)
369 PRK00625 shikimate kinase; Pro 27.3 2.2E+02 0.0049 22.2 6.0 77 27-106 65-148 (173)
370 PRK05866 short chain dehydroge 27.2 2.7E+02 0.0059 23.2 6.9 54 5-66 41-94 (293)
371 PRK11096 ansB L-asparaginase I 27.1 3.4E+02 0.0073 24.0 7.6 48 100-150 100-152 (347)
372 PRK07023 short chain dehydroge 26.9 1.1E+02 0.0025 24.2 4.4 30 4-41 1-30 (243)
373 PRK06300 enoyl-(acyl carrier p 26.9 91 0.002 26.6 3.9 29 37-65 10-39 (299)
374 cd04246 AAK_AK-DapG-like AAK_A 26.9 1.6E+02 0.0036 23.9 5.4 35 10-45 6-42 (239)
375 PRK09072 short chain dehydroge 26.9 99 0.0021 25.0 4.0 28 38-66 8-35 (263)
376 PRK08589 short chain dehydroge 26.8 96 0.0021 25.4 4.0 31 36-67 7-37 (272)
377 KOG2683 Sirtuin 4 and related 26.8 1.1E+02 0.0025 26.0 4.3 42 95-139 241-282 (305)
378 PRK03378 ppnK inorganic polyph 26.8 1.8E+02 0.0039 25.0 5.7 52 100-157 63-121 (292)
379 TIGR00147 lipid kinase, YegS/R 26.8 1.8E+02 0.0039 24.3 5.7 33 101-138 58-91 (293)
380 CHL00162 thiG thiamin biosynth 26.7 73 0.0016 27.2 3.1 31 92-122 179-209 (267)
381 PTZ00187 succinyl-CoA syntheta 26.7 3.6E+02 0.0079 23.6 7.6 91 89-182 211-312 (317)
382 cd06308 PBP1_sensor_kinase_lik 26.7 1.2E+02 0.0026 24.3 4.5 35 99-138 55-89 (270)
383 TIGR03366 HpnZ_proposed putati 26.7 1.5E+02 0.0033 24.3 5.2 83 36-121 122-208 (280)
384 PF02187 GAS2: Growth-Arrest-S 26.6 48 0.001 22.7 1.7 21 100-120 45-65 (73)
385 PRK07109 short chain dehydroge 26.5 3.1E+02 0.0067 23.5 7.2 56 3-66 7-62 (334)
386 TIGR01007 eps_fam capsular exo 26.4 1.4E+02 0.0031 23.3 4.8 36 2-40 15-50 (204)
387 PRK09186 flagellin modificatio 26.3 1.5E+02 0.0033 23.5 5.0 33 1-41 1-33 (256)
388 PRK14087 dnaA chromosomal repl 26.2 4.5E+02 0.0097 23.9 8.5 106 24-136 125-245 (450)
389 TIGR00065 ftsZ cell division p 26.2 4.5E+02 0.0097 23.2 8.2 72 29-108 96-171 (349)
390 PRK14106 murD UDP-N-acetylmura 26.1 2.1E+02 0.0045 25.5 6.2 29 38-68 8-36 (450)
391 PRK12361 hypothetical protein; 26.1 1.5E+02 0.0033 27.4 5.5 28 104-136 300-327 (547)
392 TIGR02149 glgA_Coryne glycogen 26.1 96 0.0021 26.3 4.0 38 95-140 275-314 (388)
393 PRK07062 short chain dehydroge 26.0 1E+02 0.0022 24.9 3.9 18 26-43 22-39 (265)
394 KOG0832 Mitochondrial/chloropl 25.9 2.3E+02 0.0049 24.0 5.8 46 18-64 90-136 (251)
395 PRK08303 short chain dehydroge 25.8 97 0.0021 26.2 3.9 18 26-43 22-39 (305)
396 PF13604 AAA_30: AAA domain; P 25.7 2.5E+02 0.0054 22.2 6.1 35 36-70 19-56 (196)
397 PRK07890 short chain dehydroge 25.7 2.9E+02 0.0064 21.9 6.6 54 5-66 6-59 (258)
398 cd00363 PFK Phosphofructokinas 25.6 4.6E+02 0.0099 22.9 9.1 31 37-67 3-37 (338)
399 cd01411 SIR2H SIR2H: Uncharact 25.6 81 0.0017 25.8 3.2 45 91-139 162-206 (225)
400 PF07442 Ponericin: Ponericin; 25.5 46 0.001 18.4 1.2 22 26-56 7-28 (29)
401 cd03817 GT1_UGDG_like This fam 25.5 1.9E+02 0.0041 23.5 5.5 40 92-139 270-311 (374)
402 PRK05333 NAD-dependent deacety 25.4 1.5E+02 0.0032 25.2 4.9 70 91-181 205-275 (285)
403 PLN02556 cysteine synthase/L-3 25.4 4.7E+02 0.01 23.1 11.9 46 23-69 204-252 (368)
404 PF00890 FAD_binding_2: FAD bi 25.4 58 0.0013 28.5 2.5 28 38-67 2-29 (417)
405 PF00205 TPP_enzyme_M: Thiamin 25.3 2.7E+02 0.0059 20.2 6.2 130 26-179 2-137 (137)
406 PRK07814 short chain dehydroge 25.2 1.1E+02 0.0024 24.7 4.1 16 27-42 25-40 (263)
407 COG2515 Acd 1-aminocyclopropan 25.2 2.1E+02 0.0046 25.1 5.7 49 18-67 46-96 (323)
408 PRK07041 short chain dehydroge 25.1 87 0.0019 24.6 3.3 27 39-66 1-27 (230)
409 PRK03910 D-cysteine desulfhydr 25.0 2.1E+02 0.0045 24.6 5.9 57 12-69 157-219 (331)
410 PRK11780 isoprenoid biosynthes 25.0 77 0.0017 25.9 3.0 40 4-43 1-40 (217)
411 cd02040 NifH NifH gene encodes 24.9 1.6E+02 0.0035 23.9 5.0 33 4-40 1-33 (270)
412 PRK07819 3-hydroxybutyryl-CoA 24.8 1.4E+02 0.003 25.2 4.7 31 2-41 3-33 (286)
413 PRK06914 short chain dehydroge 24.7 1.1E+02 0.0024 24.9 4.0 32 5-44 4-35 (280)
414 cd06305 PBP1_methylthioribose_ 24.6 1.4E+02 0.0031 23.8 4.5 34 7-42 2-35 (273)
415 cd06301 PBP1_rhizopine_binding 24.6 1.4E+02 0.0031 23.8 4.6 37 97-138 53-89 (272)
416 PRK00414 gmhA phosphoheptose i 24.6 2.8E+02 0.0061 21.9 6.2 30 19-48 28-57 (192)
417 KOG4435 Predicted lipid kinase 24.6 2.8E+02 0.006 25.5 6.5 61 83-147 96-158 (535)
418 PF00464 SHMT: Serine hydroxym 24.6 62 0.0014 29.2 2.5 44 22-65 306-359 (399)
419 COG0794 GutQ Predicted sugar p 24.6 2E+02 0.0043 23.6 5.2 77 5-110 40-140 (202)
420 COG4221 Short-chain alcohol de 24.4 1.2E+02 0.0026 25.6 4.1 51 6-66 7-58 (246)
421 PF01965 DJ-1_PfpI: DJ-1/PfpI 24.3 59 0.0013 24.3 2.0 36 103-138 39-79 (147)
422 PRK07524 hypothetical protein; 24.3 5.6E+02 0.012 23.5 11.1 87 23-113 189-276 (535)
423 smart00243 GAS2 Growth-Arrest- 24.2 65 0.0014 22.1 2.0 20 100-119 45-64 (73)
424 PRK01911 ppnK inorganic polyph 24.2 2.1E+02 0.0046 24.5 5.7 52 100-157 64-122 (292)
425 PRK05693 short chain dehydroge 24.2 1.3E+02 0.0027 24.6 4.2 31 4-42 1-31 (274)
426 PRK03372 ppnK inorganic polyph 24.1 1.8E+02 0.0038 25.3 5.2 53 99-157 71-130 (306)
427 TIGR01202 bchC 2-desacetyl-2-h 24.1 4.1E+02 0.0089 22.2 7.4 31 35-67 145-175 (308)
428 cd06310 PBP1_ABC_sugar_binding 24.1 1.6E+02 0.0035 23.5 4.7 37 97-138 54-90 (273)
429 PRK11840 bifunctional sulfur c 24.0 5E+02 0.011 22.9 10.3 109 6-138 169-279 (326)
430 PLN02494 adenosylhomocysteinas 24.0 4E+02 0.0087 24.8 7.7 91 36-145 255-346 (477)
431 cd00401 AdoHcyase S-adenosyl-L 23.9 3.2E+02 0.0069 24.8 6.9 69 37-116 204-273 (413)
432 TIGR03087 stp1 sugar transfera 23.9 2E+02 0.0043 24.9 5.6 66 97-185 294-362 (397)
433 PRK12829 short chain dehydroge 23.9 1.2E+02 0.0027 24.1 4.1 30 36-66 12-41 (264)
434 PRK13889 conjugal transfer rel 23.9 1.8E+02 0.004 29.5 5.9 41 30-70 357-400 (988)
435 cd06312 PBP1_ABC_sugar_binding 23.8 1.7E+02 0.0036 23.5 4.8 38 96-138 53-90 (271)
436 cd06314 PBP1_tmGBP Periplasmic 23.8 1.9E+02 0.0042 23.1 5.2 37 96-138 51-87 (271)
437 cd04260 AAK_AKi-DapG-BS AAK_AK 23.7 1E+02 0.0023 25.3 3.6 25 10-34 6-30 (244)
438 KOG1718 Dual specificity phosp 23.7 1.1E+02 0.0023 24.8 3.4 51 101-152 95-155 (198)
439 PF03033 Glyco_transf_28: Glyc 23.7 1.5E+02 0.0032 21.3 4.1 32 20-52 10-41 (139)
440 KOG0725 Reductases with broad 23.6 1.1E+02 0.0024 25.7 3.8 33 6-45 9-41 (270)
441 PRK00170 azoreductase; Reviewe 23.6 2.1E+02 0.0046 22.2 5.3 32 4-35 1-32 (201)
442 PRK00481 NAD-dependent deacety 23.6 1.9E+02 0.0042 23.7 5.2 69 92-181 169-238 (242)
443 PRK00207 sulfur transfer compl 23.6 2.1E+02 0.0045 21.3 4.9 33 6-39 2-34 (128)
444 PRK03767 NAD(P)H:quinone oxido 23.5 1.4E+02 0.003 23.7 4.2 61 98-158 67-139 (200)
445 TIGR02076 pyrH_arch uridylate 23.5 1.1E+02 0.0023 24.7 3.6 36 10-45 5-43 (221)
446 cd07025 Peptidase_S66 LD-Carbo 23.5 1E+02 0.0023 26.0 3.6 45 89-134 46-95 (282)
447 cd06281 PBP1_LacI_like_5 Ligan 23.5 2E+02 0.0043 23.0 5.2 57 7-67 2-60 (269)
448 TIGR00715 precor6x_red precorr 23.4 1.7E+02 0.0036 24.7 4.8 18 166-183 238-255 (256)
449 KOG2382 Predicted alpha/beta h 23.4 2.2E+02 0.0048 25.0 5.6 86 102-187 219-314 (315)
450 PF14953 DUF4504: Domain of un 23.4 1.4E+02 0.0031 25.4 4.4 52 130-181 32-93 (270)
451 KOG4716 Thioredoxin reductase 23.4 1.3E+02 0.0028 27.3 4.2 37 28-66 11-48 (503)
452 PRK06182 short chain dehydroge 23.4 4E+02 0.0087 21.5 8.5 29 37-66 5-33 (273)
453 PF11802 CENP-K: Centromere-as 23.3 1.9E+02 0.004 24.8 5.0 39 111-150 208-246 (268)
454 PTZ00286 6-phospho-1-fructokin 23.3 2.6E+02 0.0056 25.8 6.3 52 8-66 154-211 (459)
455 cd06319 PBP1_ABC_sugar_binding 23.2 1.6E+02 0.0034 23.5 4.6 38 96-138 51-88 (277)
456 PRK07775 short chain dehydroge 23.2 4.1E+02 0.0089 21.6 7.4 56 3-66 9-64 (274)
457 COG1028 FabG Dehydrogenases wi 23.2 1.2E+02 0.0026 24.1 3.9 30 4-41 5-34 (251)
458 cd05212 NAD_bind_m-THF_DH_Cycl 23.1 3.4E+02 0.0073 20.6 9.1 99 5-117 29-129 (140)
459 TIGR00315 cdhB CO dehydrogenas 23.1 1.7E+02 0.0037 23.0 4.5 38 92-134 18-59 (162)
460 PRK06171 sorbitol-6-phosphate 23.1 1.3E+02 0.0028 24.2 4.1 30 36-66 10-39 (266)
461 TIGR02991 ectoine_eutB ectoine 23.1 1.6E+02 0.0035 25.3 4.8 45 24-69 157-203 (317)
462 PRK07063 short chain dehydroge 23.1 1.3E+02 0.0028 24.1 4.1 30 5-42 8-37 (260)
463 PRK13146 hisH imidazole glycer 23.1 2.4E+02 0.0051 22.7 5.5 48 19-66 15-83 (209)
464 KOG1209 1-Acyl dihydroxyaceton 23.0 2.2E+02 0.0047 24.1 5.2 45 2-53 5-49 (289)
465 PRK07023 short chain dehydroge 23.0 1.3E+02 0.0028 23.9 4.0 29 38-67 4-32 (243)
466 PRK08340 glucose-1-dehydrogena 22.9 1.3E+02 0.0028 24.2 4.0 31 6-44 2-32 (259)
467 PF00365 PFK: Phosphofructokin 22.9 88 0.0019 26.7 3.1 30 37-66 3-36 (282)
468 PRK14072 6-phosphofructokinase 22.8 84 0.0018 28.5 3.1 33 35-67 4-42 (416)
469 COG1534 Predicted RNA-binding 22.8 2E+02 0.0043 20.8 4.4 52 128-181 15-67 (97)
470 TIGR03325 BphB_TodD cis-2,3-di 22.8 1.3E+02 0.0028 24.3 4.0 15 27-41 20-34 (262)
471 cd01170 THZ_kinase 4-methyl-5- 22.7 3.9E+02 0.0086 21.9 6.9 68 47-139 18-87 (242)
472 PLN02827 Alcohol dehydrogenase 22.7 5.1E+02 0.011 22.5 7.9 30 36-67 195-225 (378)
473 PRK06114 short chain dehydroge 22.6 1.3E+02 0.0027 24.2 3.9 31 5-43 9-39 (254)
474 PF09587 PGA_cap: Bacterial ca 22.6 1.1E+02 0.0024 25.1 3.6 14 48-61 204-217 (250)
475 KOG0805 Carbon-nitrogen hydrol 22.5 3.2E+02 0.0068 23.6 6.1 44 2-45 15-65 (337)
476 cd06322 PBP1_ABC_sugar_binding 22.5 1.6E+02 0.0035 23.4 4.5 33 7-41 2-34 (267)
477 PRK08267 short chain dehydroge 22.5 1.6E+02 0.0035 23.6 4.5 29 4-40 1-29 (260)
478 PRK04539 ppnK inorganic polyph 22.4 2.1E+02 0.0046 24.6 5.3 52 100-157 68-126 (296)
479 TIGR01470 cysG_Nterm siroheme 22.3 1.1E+02 0.0024 24.7 3.4 32 37-70 11-42 (205)
480 PRK14573 bifunctional D-alanyl 22.3 1.4E+02 0.0031 29.1 4.7 37 4-40 451-487 (809)
481 PRK14088 dnaA chromosomal repl 22.2 5.9E+02 0.013 23.0 9.2 104 24-136 115-233 (440)
482 cd05213 NAD_bind_Glutamyl_tRNA 22.1 3.7E+02 0.008 22.9 6.8 66 98-178 236-302 (311)
483 cd04197 eIF-2B_epsilon_N The N 22.1 1.6E+02 0.0035 23.3 4.3 61 104-181 3-66 (217)
484 PF03129 HGTP_anticodon: Antic 22.1 2.6E+02 0.0055 18.8 7.4 58 7-67 2-59 (94)
485 PRK08226 short chain dehydroge 22.1 1.3E+02 0.0029 24.1 3.9 31 36-67 7-37 (263)
486 PRK08327 acetolactate synthase 22.0 6.5E+02 0.014 23.4 10.6 82 23-113 208-292 (569)
487 TIGR02768 TraA_Ti Ti-type conj 22.0 2.3E+02 0.0049 27.7 6.0 37 35-71 368-407 (744)
488 COG0528 PyrH Uridylate kinase 22.0 2.9E+02 0.0062 23.3 5.8 35 17-54 25-62 (238)
489 PRK08862 short chain dehydroge 22.0 1.3E+02 0.0029 24.0 3.9 29 37-66 7-35 (227)
490 PRK02231 ppnK inorganic polyph 21.9 3.2E+02 0.007 23.2 6.3 49 100-154 42-97 (272)
491 cd06317 PBP1_ABC_sugar_binding 21.9 1.7E+02 0.0037 23.3 4.5 38 96-138 52-89 (275)
492 PF01320 Colicin_Pyocin: Colic 21.8 42 0.00092 23.7 0.7 45 136-184 27-76 (85)
493 PF04722 Ssu72: Ssu72-like pro 21.8 1.6E+02 0.0034 24.0 4.1 31 5-42 2-32 (195)
494 PRK08273 thiamine pyrophosphat 21.8 6.7E+02 0.014 23.5 12.1 87 23-112 196-284 (597)
495 PLN03154 putative allyl alcoho 21.8 5.1E+02 0.011 22.1 9.8 31 36-68 160-191 (348)
496 PRK10494 hypothetical protein; 21.7 1.9E+02 0.0042 24.2 4.9 12 100-111 78-89 (259)
497 PRK06200 2,3-dihydroxy-2,3-dih 21.7 1.4E+02 0.003 24.1 4.0 15 27-41 21-35 (263)
498 PRK10307 putative glycosyl tra 21.6 1.5E+02 0.0033 25.7 4.5 35 5-39 1-35 (412)
499 TIGR01138 cysM cysteine syntha 21.6 4.9E+02 0.011 21.9 9.7 47 22-69 150-199 (290)
500 PRK00149 dnaA chromosomal repl 21.6 6E+02 0.013 22.8 9.9 43 24-66 132-184 (450)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=1.6e-57 Score=363.64 Aligned_cols=178 Identities=41% Similarity=0.780 Sum_probs=171.1
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceE
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDV 84 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~ 84 (189)
++|||||||+.+++++|++.|++||++||++|+.||||||..|+|+|+++||+++||+|+||+|..+...+.+++.++++
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 58999999999999999999999999999999999999994499999999999999999999998887777778888899
Q ss_pred EecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccC
Q 045940 85 LIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARN 164 (189)
Q Consensus 85 ~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~ 164 (189)
+.+++|++||.+|++.||+||+||||+|||+|++++|+|.|+++|+||++++|.+|||+++++|+++|+++||++++..+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeCCHHHHHHHhhcC
Q 045940 165 IVISAKNARDLLQGMEVP 182 (189)
Q Consensus 165 ~i~~~~~~ee~~~~l~~~ 182 (189)
.+++++|++|++++|++|
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 999999999999999764
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=4.5e-47 Score=309.19 Aligned_cols=182 Identities=34% Similarity=0.601 Sum_probs=168.9
Q ss_pred CCeEEEEEcCCCCCCChH-HHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCC
Q 045940 3 KFKRVCVFCGSNSGNRKI-FSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTV 81 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~-~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~ 81 (189)
.+++|||||+|+...++. +|+.|++||++||++|+.|++||++ |+|+|+++||+++||+||||+|......+.++...
T Consensus 13 ~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~ 91 (205)
T COG1611 13 GIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPPNYEV 91 (205)
T ss_pred CcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccCcccc
Confidence 478999999999877777 9999999999999999988888888 99999999999999999999998776655444556
Q ss_pred ceEEecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCC--CCcEEEEeCCCCchHHHHHHH-HHHHcCCC
Q 045940 82 GDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIH--DKPVGVLNVDGYYDSLLRFFD-KGVEEGFI 158 (189)
Q Consensus 82 ~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~--~kPiill~~~g~~~~l~~~l~-~~~~~g~i 158 (189)
++++...+|++||..|+++|||||++|||+||++|+|++|+|.|++.+ .+|.++++.++||+++.+|++ +++.++++
T Consensus 92 ~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~~i 171 (205)
T COG1611 92 IELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEGLI 171 (205)
T ss_pred ceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhhcC
Confidence 788999999999999999999999999999999999999999999988 899989999999999999998 99999999
Q ss_pred CccccCcEEEeCCHHHHHHHhhcCCCC
Q 045940 159 KSSARNIVISAKNARDLLQGMEVPNLL 185 (189)
Q Consensus 159 ~~~~~~~i~~~~~~ee~~~~l~~~~~~ 185 (189)
++...+++++++|++++++.+.++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 172 SEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred ChhhhhheeeecCHHHHHHHHHHhccc
Confidence 999999999999999999999988764
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=4.6e-44 Score=281.42 Aligned_cols=157 Identities=25% Similarity=0.355 Sum_probs=135.6
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCce
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGD 83 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~ 83 (189)
|++|||||||+ .++.+++.|++||++||++|+.|||||+. |+|++++++|+++||+|+||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 68999999998 48899999999999999999999999888 99999999999999999999998653 2334444
Q ss_pred EEecCC-HHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccc
Q 045940 84 VLIVSD-MHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSA 162 (189)
Q Consensus 84 ~~~~~~-~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~ 162 (189)
.++..+ +++||++|++.||+||++|||+|||+|++++|+ ++||++++|.+|||+++++++ +. ++++.++
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~-~~~~~~~- 143 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LI-EGVYLDE- 143 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hh-ccccccc-
Confidence 444444 488999999999999999999999999999997 789999999999999988865 34 4444433
Q ss_pred cCcEEEeCCHHHHHHHh
Q 045940 163 RNIVISAKNARDLLQGM 179 (189)
Q Consensus 163 ~~~i~~~~~~ee~~~~l 179 (189)
.+.+++||||+++++
T Consensus 144 --~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 --RVIVEITPAEAVKLA 158 (159)
T ss_pred --eeEecCCHHHHHHhh
Confidence 699999999999875
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=5.2e-41 Score=256.83 Aligned_cols=131 Identities=43% Similarity=0.749 Sum_probs=124.8
Q ss_pred hHHHHHHHHhcCCeEEEEecCcccc-ccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcC
Q 045940 49 MGLVSQTIFDGGCHVLGVIPKALVP-IEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLG 127 (189)
Q Consensus 49 M~a~a~ga~~~gg~viGv~p~~~~~-~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~ 127 (189)
|+|+++||+++||+|+||+|+...+ ++.+++.+++++.+++|++||+.|++.||+||++|||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999998888 667777788999999999999999999999999999999999999999999999
Q ss_pred CCCC-cEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHh
Q 045940 128 IHDK-PVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGM 179 (189)
Q Consensus 128 ~~~k-Piill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l 179 (189)
.++| |++|+|.+|||+++++|+++|+++||++++..+.+++++|++|++++|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 8877 999999999999999999999999999999999999999999999976
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.73 E-value=3.3e-16 Score=129.14 Aligned_cols=156 Identities=16% Similarity=0.203 Sum_probs=120.7
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccc---ccc------
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALV---PIE------ 75 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~---~~e------ 75 (189)
+.|+|.|+... ++...+.|+++++.|+++|++||+|++. |+|.++.++|+++||.+|+|+|..+. |.+
T Consensus 45 ~~iaIvGsR~~--s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIVGTRRP--TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 68999998754 6777899999999999999999999999 99999999999999999999997642 221
Q ss_pred -ccCCC---Cce-----EEecCCHHHHHHHHHHhcCeeEEecCC--cchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchH
Q 045940 76 -ISGQT---VGD-----VLIVSDMHERKAEMARRADAFIALPGG--YGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDS 144 (189)
Q Consensus 76 -~~~~~---~~~-----~~~~~~~~~R~~~m~~~sda~I~lpGG--~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~ 144 (189)
+..+. +++ ......|..||+++...||++|++..+ .||+.++-.++. .+|||+.+-.. .+++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~------~gr~v~~~pg~-~~~~ 194 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALE------QGREVFAYPGD-LNSP 194 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHH------hCCcEEEEcCC-CCCc
Confidence 00011 111 122346799999999999999999997 799998888874 68999998543 5555
Q ss_pred HHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHh
Q 045940 145 LLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGM 179 (189)
Q Consensus 145 l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l 179 (189)
..+....++++|- ..+.+++++++.+
T Consensus 195 ~~~G~~~Li~~GA---------~~i~~~~d~~~~~ 220 (220)
T TIGR00732 195 ESDGCHKLIEQGA---------ALITSAKDILETL 220 (220)
T ss_pred cchHHHHHHHCCC---------EEECCHHHHHHhC
Confidence 5555667776662 4567888887753
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.48 E-value=8.7e-13 Score=108.26 Aligned_cols=143 Identities=20% Similarity=0.167 Sum_probs=88.7
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccc---cccc----
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALV---PIEI---- 76 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~---~~e~---- 76 (189)
-+.|+|.|+.+. ++...+.|+++++.|+++|+.||+|+.. |+..++.++|+++||++|+|+|..+. |.+.
T Consensus 44 ~~~iaIvGsR~~--s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~ 120 (212)
T PF02481_consen 44 QPSIAIVGSRNP--SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELA 120 (212)
T ss_dssp S-EEEEE--SS----HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHH
T ss_pred CceEEEEcCCCC--CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHH
Confidence 578999998765 6788999999999999999999999999 99999999999999999999986652 3220
Q ss_pred ---c-CCC-------CceEEecCCHHHHHHHHHHhcCeeEEecC--CcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCch
Q 045940 77 ---S-GQT-------VGDVLIVSDMHERKAEMARRADAFIALPG--GYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYD 143 (189)
Q Consensus 77 ---~-~~~-------~~~~~~~~~~~~R~~~m~~~sda~I~lpG--G~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~ 143 (189)
. .+. ...-.....|.+||+++...||++|++.- ..||+.-+-.++. .+|||+.+... .++
T Consensus 121 ~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~------~gr~v~~vp~~-~~~ 193 (212)
T PF02481_consen 121 ERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALE------QGRPVFAVPGP-IDD 193 (212)
T ss_dssp HHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHH------HT--EEE-----TT-
T ss_pred HHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHH------cCCeEEEEeCC-CCC
Confidence 0 111 11122345678999999999999999974 4789887777774 57999988443 666
Q ss_pred HHHHHHHHHHHcC
Q 045940 144 SLLRFFDKGVEEG 156 (189)
Q Consensus 144 ~l~~~l~~~~~~g 156 (189)
+..+.-..++++|
T Consensus 194 ~~~~G~~~Li~~G 206 (212)
T PF02481_consen 194 PNSEGNNELIKEG 206 (212)
T ss_dssp GGGHHHHHHHHTT
T ss_pred cccHHHHHHHHcC
Confidence 6666666777766
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.44 E-value=6.1e-12 Score=110.88 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCcc---cccc------
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKAL---VPIE------ 75 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~---~~~e------ 75 (189)
+.|+|.|+.+. ++.-.+.++++++.|+++|++||+|+.. |+..++.++|+++||++|+|++..+ +|.+
T Consensus 108 ~~iaiVGsR~~--s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~ 184 (374)
T PRK10736 108 PQLAVVGSRAH--SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAE 184 (374)
T ss_pred CeEEEECCCCC--CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHH
Confidence 57999998764 5667888999999999999999999998 9999999999999999999987554 2321
Q ss_pred -c-cCC-------CCceEEecCCHHHHHHHHHHhcCeeEEecCC--cchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchH
Q 045940 76 -I-SGQ-------TVGDVLIVSDMHERKAEMARRADAFIALPGG--YGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDS 144 (189)
Q Consensus 76 -~-~~~-------~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG--~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~ 144 (189)
+ ..+ +...-....+|..||+++...|+++||+--+ .|||.=.-.++ ..+|+|+.+-. ..+++
T Consensus 185 ~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al------~~gR~VfavPG-~i~~~ 257 (374)
T PRK10736 185 SIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCAL------EQGRDVFALPG-PIGNP 257 (374)
T ss_pred HHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHH------HhCCeEEEEcC-CCCCc
Confidence 1 111 0111122457899999999999999999865 78886665555 37899998843 25565
Q ss_pred HHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHhh
Q 045940 145 LLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180 (189)
Q Consensus 145 l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~ 180 (189)
.-.-..+++.+|. ..+.+++++++.+.
T Consensus 258 ~s~G~n~LI~~GA---------~lv~~~~Di~~~l~ 284 (374)
T PRK10736 258 GSEGPHWLIKQGA---------YLVTSPEDILENLQ 284 (374)
T ss_pred cchhHHHHHHCCC---------EEeCCHHHHHHHhh
Confidence 5555666676662 57778888888884
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.25 E-value=2.2e-10 Score=100.18 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCcc---cccc------
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKAL---VPIE------ 75 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~---~~~e------ 75 (189)
+.++|.|+.+. +..-.+.++.|++.|+++|++||+|+.. |+..++.++|++++|++|+|+...+ +|++
T Consensus 112 ~~vaIVGsR~~--S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIVGSRKP--SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEEeCCCC--CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 68999998765 6777899999999999999999999999 9999999999999999999987554 2322
Q ss_pred -ccCCC-------CceEEecCCHHHHHHHHHHhcCeeEEecCC--cchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHH
Q 045940 76 -ISGQT-------VGDVLIVSDMHERKAEMARRADAFIALPGG--YGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSL 145 (189)
Q Consensus 76 -~~~~~-------~~~~~~~~~~~~R~~~m~~~sda~I~lpGG--~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l 145 (189)
...+. ..+-+...+|+.||+++..+||+++|+-.+ .|+|.=.-.+.. .+|.|+.+-.+ ..++.
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Ale------qgR~VfavPg~-~~~~~ 261 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALE------QGRDVFAVPGS-IDNPR 261 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHH------cCCeeEEcCCC-ccccc
Confidence 11111 112234558999999999999999999887 788865555553 67888877543 33333
Q ss_pred HHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHhh
Q 045940 146 LRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180 (189)
Q Consensus 146 ~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~ 180 (189)
..=..+++++|- ..+++.+++++.+.
T Consensus 262 s~G~~~LI~~GA---------~lv~~~~dil~~l~ 287 (350)
T COG0758 262 SEGCNKLIKEGA---------KLVTSAEDILEELN 287 (350)
T ss_pred ccchHHHHHccc---------hhcccHHHHHHHhh
Confidence 232344555552 23444455555543
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=97.43 E-value=0.0015 Score=50.51 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=53.0
Q ss_pred EEEcCCCCChhHHHHHHHHhcCCeEEEEecCcccccccc-CCCCc-eEEecCCHHHHHHHHHHhcCeeEEecCC---cch
Q 045940 39 LVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEIS-GQTVG-DVLIVSDMHERKAEMARRADAFIALPGG---YGT 113 (189)
Q Consensus 39 lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~-~~~~~-~~~~~~~~~~R~~~m~~~sda~I~lpGG---~GT 113 (189)
||+||-+ |+.+|+-+.|+++|-..=|-.|......+-+ +..|. ......+...|.+..++.||+.++|-=| -||
T Consensus 1 IiSGGQT-GvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQT-GVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE----T-THHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCccc-cHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 6888765 9999999999999988889888765443311 12221 1223467899999999999997777644 255
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 114 MEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 114 L~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
.-=+. + -..+.||+.+++..
T Consensus 80 ~lT~~--~----a~~~~KP~l~i~~~ 99 (145)
T PF12694_consen 80 ALTVE--F----ARKHGKPCLHIDLS 99 (145)
T ss_dssp HHHHH--H----HHHTT--EEEETS-
T ss_pred HHHHH--H----HHHhCCCEEEEecC
Confidence 32222 2 22589999988653
No 10
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=95.81 E-value=0.031 Score=40.90 Aligned_cols=47 Identities=36% Similarity=0.346 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHhcCeeEEecCC----cchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 87 VSDMHERKAEMARRADAFIALPGG----YGTMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 87 ~~~~~~R~~~m~~~sda~I~lpGG----~GTL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
.....+|....++.||++|+.-.+ .||.-|+..++. .+|||+++..+
T Consensus 48 ~~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~a------lgkpv~~~~~d 98 (113)
T PF05014_consen 48 AREIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYA------LGKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHH------TTSEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHH------CCCEEEEEEcC
Confidence 334578888999999998887766 999999999986 68999999765
No 11
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=95.74 E-value=0.29 Score=41.33 Aligned_cols=125 Identities=24% Similarity=0.180 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCChhHHHHHHHHhcCC-eEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcch
Q 045940 35 RKINLVYGGGSVGLMGLVSQTIFDGGC-HVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGT 113 (189)
Q Consensus 35 ~g~~lv~GGg~~GlM~a~a~ga~~~gg-~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GT 113 (189)
.++.+||=||. |.- .+.+.+.+..+ .++-+-+.. . +.....+ ++.... ...-.-++..||++|.- ||.+|
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~--~-~~~~~ni-~~~~~~--~~~~~~~m~~ad~vIs~-~G~~t 262 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNA--A-DPRPGNI-HVRPFS--TPDFAELMAAADLVISK-GGYTT 262 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCc--c-cccCCCE-EEeecC--hHHHHHHHHhCCEEEEC-CCHHH
Confidence 46778876665 555 55565665553 444332321 1 1111222 122111 12223345889988876 78999
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHhhcC
Q 045940 114 MEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEVP 182 (189)
Q Consensus 114 L~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 182 (189)
+.|.. ..+||++++-..++++.... .+.+.+.|....-..+ .-+++.+.++|++.
T Consensus 263 ~~Ea~---------~~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~~~~~~~----~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 263 ISEAL---------ALGKPALVIPRPGQDEQEYN-ARKLEELGLGIVLSQE----DLTPERLAEFLERL 317 (318)
T ss_pred HHHHH---------HcCCCEEEEeCCCCchHHHH-HHHHHHCCCeEEcccc----cCCHHHHHHHHhcC
Confidence 87774 36899999977666665433 2344444432211111 11789998888763
No 12
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=95.07 E-value=1.1 Score=37.97 Aligned_cols=75 Identities=20% Similarity=0.109 Sum_probs=39.6
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeC--CHH
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAK--NAR 173 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~--~~e 173 (189)
-++..||++|. ++|..|+- |++ ..++|++..+..+.-.......+.+.+. ....+.-.. |++
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~---Ea~------~~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVA---ELA------AAGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLPE 309 (348)
T ss_pred HHHHhCCEEEE-CCChhHHH---HHH------HcCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCHH
Confidence 46688999886 44545664 444 3789999886543211111101111111 112222223 488
Q ss_pred HHHHHhhcCCCCC
Q 045940 174 DLLQGMEVPNLLP 186 (189)
Q Consensus 174 e~~~~l~~~~~~~ 186 (189)
++.+.|.+....|
T Consensus 310 ~l~~~i~~ll~~~ 322 (348)
T TIGR01133 310 KLLEALLKLLLDP 322 (348)
T ss_pred HHHHHHHHHHcCH
Confidence 8888887655443
No 13
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=94.98 E-value=0.38 Score=38.49 Aligned_cols=130 Identities=16% Similarity=0.224 Sum_probs=62.1
Q ss_pred CeEEEEEcCCCCC------CChHHHHHHHHHHH---HHHHCCCe-EEEcCCCCChhHHHHHHHHhcC-----CeEEEEec
Q 045940 4 FKRVCVFCGSNSG------NRKIFSDAALDLAT---QLVERKIN-LVYGGGSVGLMGLVSQTIFDGG-----CHVLGVIP 68 (189)
Q Consensus 4 ~~~I~V~g~s~~~------~~~~~~~~A~~lg~---~la~~g~~-lv~GGg~~GlM~a~a~ga~~~g-----g~viGv~p 68 (189)
|+++||-|..... .+|.....-..|-+ .+-+.|++ +++||.- |+.--+++.+++.. -+.+-++|
T Consensus 1 M~~~~~TGyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~Ggal-G~D~waae~vl~LK~~yp~ikL~~v~P 79 (177)
T PF06908_consen 1 MKRCCFTGYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGAL-GVDLWAAEVVLELKKEYPEIKLALVLP 79 (177)
T ss_dssp --EEEEEE--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---T-THHHHHHHHHHTTTTT-TT-EEEEEES
T ss_pred CeEEEEEecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcc-cHHHHHHHHHHHHHhhhhheEEEEEEc
Confidence 4677777654432 34554444444444 33456887 6667665 99999999999853 35666677
Q ss_pred CccccccccC----------CCCceEEec--------CCHHHHHHHHHHhcCeeEEec-----CCcchHHHHHHHHHHHh
Q 045940 69 KALVPIEISG----------QTVGDVLIV--------SDMHERKAEMARRADAFIALP-----GGYGTMEELLEMITWSQ 125 (189)
Q Consensus 69 ~~~~~~e~~~----------~~~~~~~~~--------~~~~~R~~~m~~~sda~I~lp-----GG~GTL~El~~~~~~~~ 125 (189)
-......+.. ...+....+ .-|..||+.|++.||.+|++= ||....-+......
T Consensus 80 f~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~--- 156 (177)
T PF06908_consen 80 FENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQ--- 156 (177)
T ss_dssp SB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHH---
T ss_pred ccchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHh---
Confidence 4322221110 011222222 245799999999999888874 23222222222211
Q ss_pred cCCCCCcEEEEeC
Q 045940 126 LGIHDKPVGVLNV 138 (189)
Q Consensus 126 ~~~~~kPiill~~ 138 (189)
..++.||.+++.
T Consensus 157 -~~~~y~i~~I~~ 168 (177)
T PF06908_consen 157 -EQKGYPIDLIDP 168 (177)
T ss_dssp -HHH---EEEE-H
T ss_pred -hccCCeEEEecH
Confidence 124678888863
No 14
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=94.98 E-value=0.6 Score=35.69 Aligned_cols=114 Identities=12% Similarity=0.063 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCeEEEEecCcccccc----------ccCCCCceEEecCCH-HHHHHHHHHhcCeeEEecCC-cchHHHH
Q 045940 50 GLVSQTIFDGGCHVLGVIPKALVPIE----------ISGQTVGDVLIVSDM-HERKAEMARRADAFIALPGG-YGTMEEL 117 (189)
Q Consensus 50 ~a~a~ga~~~gg~viGv~p~~~~~~e----------~~~~~~~~~~~~~~~-~~R~~~m~~~sda~I~lpGG-~GTL~El 117 (189)
+.+.+||.+.|=.+.-..|....+.. .+.+.+.+ .....+ ..|.+.+++.||.+|+.-|- +=-.+-.
T Consensus 12 e~I~~ga~~~~L~v~F~~PvtdH~~SD~~G~~iLG~e~~~fw~D-~k~a~iN~iRT~~li~~aDvVVvrFGekYKQWNaA 90 (141)
T PF11071_consen 12 EEIKEGAKAAGLPVEFTSPVTDHEASDDCGVDILGEEPNKFWRD-HKGAKINAIRTRTLIEKADVVVVRFGEKYKQWNAA 90 (141)
T ss_pred HHHHHHHHHcCCCeEEecCCCCchhhhhhhHHHhCCCCcccccc-chhhhhhHHHHHHHHhhCCEEEEEechHHHHHHHH
Confidence 45666777666666665554332211 11111111 122233 68899999999999998884 2222222
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHhh
Q 045940 118 LEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180 (189)
Q Consensus 118 ~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~ 180 (189)
|.+-... ..+||+|++.....--+|.+.=. .-..++++|+.+++.|+
T Consensus 91 fDAg~a~---AlgKplI~lh~~~~~HpLKEvda-------------~A~a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 91 FDAGYAA---ALGKPLITLHPEELHHPLKEVDA-------------AALAVAETPEQVVEILR 137 (141)
T ss_pred hhHHHHH---HcCCCeEEecchhccccHHHHhH-------------hhHhhhCCHHHHHHHHH
Confidence 3331111 26899999987766666655211 22358899999999885
No 15
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=94.01 E-value=3.1 Score=36.83 Aligned_cols=86 Identities=15% Similarity=-0.045 Sum_probs=49.1
Q ss_pred EecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCc--hHHHHHHHHHHHcCCCCccc
Q 045940 85 LIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYY--DSLLRFFDKGVEEGFIKSSA 162 (189)
Q Consensus 85 ~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~--~~l~~~l~~~~~~g~i~~~~ 162 (189)
+.+..|........+.||.+|.=+| ..|+.|++. .++|.|++-.. ++ ++-..-.+.+.+.|.-.--.
T Consensus 237 ~~v~~f~~dm~~~~~~ADLvIsRaG-a~Ti~E~~a---------~g~P~IliP~p-~~~~~~Q~~NA~~l~~~gaa~~i~ 305 (357)
T COG0707 237 VRVLPFIDDMAALLAAADLVISRAG-ALTIAELLA---------LGVPAILVPYP-PGADGHQEYNAKFLEKAGAALVIR 305 (357)
T ss_pred EEEeeHHhhHHHHHHhccEEEeCCc-ccHHHHHHH---------hCCCEEEeCCC-CCccchHHHHHHHHHhCCCEEEec
Confidence 3444455555666788998877665 689999862 57999999643 44 22111123345554322111
Q ss_pred cCcEEEeCCHHHHHHHhhcCCCC
Q 045940 163 RNIVISAKNARDLLQGMEVPNLL 185 (189)
Q Consensus 163 ~~~i~~~~~~ee~~~~l~~~~~~ 185 (189)
.+. -+++++.+.|.+....
T Consensus 306 ~~~----lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 306 QSE----LTPEKLAELILRLLSN 324 (357)
T ss_pred ccc----CCHHHHHHHHHHHhcC
Confidence 111 1477888887765543
No 16
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=93.87 E-value=1.5 Score=33.57 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCeeEEecCC-cchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEe
Q 045940 91 HERKAEMARRADAFIALPGG-YGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISA 169 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpGG-~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 169 (189)
..|-+.+++.||.+|+.-|- +=-.+-.|.+-... ..+||+|++.....--+|.+. +. .-..++
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aa---AlgKplI~lh~~~~~HpLKEv-da------------aA~ava 129 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAA---ALGKPLIILRPEELIHPLKEV-DN------------KAQAVV 129 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-hH------------HHHHHh
Confidence 68889999999999998874 22222233331111 268999999876565566552 11 123578
Q ss_pred CCHHHHHHHhh
Q 045940 170 KNARDLLQGME 180 (189)
Q Consensus 170 ~~~ee~~~~l~ 180 (189)
++|+.+++.|+
T Consensus 130 etp~Qvv~iL~ 140 (144)
T TIGR03646 130 ETPEQAIETLK 140 (144)
T ss_pred cCHHHHHHHHH
Confidence 89999999875
No 17
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.77 E-value=3.5 Score=34.89 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 92 ERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
..-..+...||++|. ++|..|+ .|+++ .++|++....
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~---~Eam~------~G~Pvv~~~~ 280 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTV---AELAA------LGLPAILIPL 280 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHH---HHHHH------hCCCEEEeec
Confidence 344556789999886 4455665 44453 6899998754
No 18
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=93.48 E-value=3.2 Score=35.71 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=43.4
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCC-chHHHHHHHHHHHcCCCCccc
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGY-YDSLLRFFDKGVEEGFIKSSA 162 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~-~~~l~~~l~~~~~~g~i~~~~ 162 (189)
-|+..||++|+---++.-..|.+ ..+|||+++-.++| -..+.-|++.+.+.+..++-.
T Consensus 240 ~~La~Adyii~TaDSinM~sEAa---------sTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~ 298 (329)
T COG3660 240 DMLAAADYIISTADSINMCSEAA---------STGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFE 298 (329)
T ss_pred HHHhhcceEEEecchhhhhHHHh---------ccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccC
Confidence 35689999999888887776553 36899999988878 556666778888776655433
No 19
>PRK10565 putative carbohydrate kinase; Provisional
Probab=93.44 E-value=0.37 Score=44.63 Aligned_cols=127 Identities=15% Similarity=0.149 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCChhHH---HHHHHHhcC-CeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCC
Q 045940 35 RKINLVYGGGSVGLMGL---VSQTIFDGG-CHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGG 110 (189)
Q Consensus 35 ~g~~lv~GGg~~GlM~a---~a~ga~~~g-g~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG 110 (189)
+|+.+|-||.. +.++| ++++|+..| |.|.=+.|....+ .-....-|+++.+...+.-..+.+.+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 48899999976 66666 566667666 5666666653221 1111122443322111212234477899888776
Q ss_pred cchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHhh
Q 045940 111 YGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180 (189)
Q Consensus 111 ~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~ 180 (189)
.|+-++...++... ...++|+ ++|.++. .++.. ... . .....++-.+-|+...+.
T Consensus 330 lg~~~~~~~~~~~~--~~~~~P~-VLDAdaL-----~ll~~---~~~-~---~~~~VLTPh~gE~~rL~~ 384 (508)
T PRK10565 330 LGQQEWGKKALQKV--ENFRKPM-LWDADAL-----NLLAI---NPD-K---RHNRVITPHPGEAARLLG 384 (508)
T ss_pred CCCCHHHHHHHHHH--HhcCCCE-EEEchHH-----HHHhh---Ccc-c---cCCeEECCCHHHHHHHhC
Confidence 77755554443222 2456887 6777762 23321 100 0 113567777777777653
No 20
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=93.32 E-value=0.96 Score=39.59 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEE-EeCCHHHH
Q 045940 97 MARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVI-SAKNARDL 175 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~-~~~~~ee~ 175 (189)
++..+|++| -.||.||+.|.. .+++|++++-.. ..+. .+.+.+.+.|.-. .+. -.-+++++
T Consensus 288 ll~~~~~~I-~hgG~~t~~Eal---------~~G~P~v~~p~~-~dq~--~~a~~l~~~g~g~-----~l~~~~~~~~~l 349 (392)
T TIGR01426 288 ILKKADAFI-THGGMNSTMEAL---------FNGVPMVAVPQG-ADQP--MTARRIAELGLGR-----HLPPEEVTAEKL 349 (392)
T ss_pred HHhhCCEEE-ECCCchHHHHHH---------HhCCCEEecCCc-ccHH--HHHHHHHHCCCEE-----EeccccCCHHHH
Confidence 457788554 688899987764 378999988532 2222 2334444444211 011 11256677
Q ss_pred HHHhhcCCC
Q 045940 176 LQGMEVPNL 184 (189)
Q Consensus 176 ~~~l~~~~~ 184 (189)
.+.|++...
T Consensus 350 ~~ai~~~l~ 358 (392)
T TIGR01426 350 REAVLAVLS 358 (392)
T ss_pred HHHHHHHhc
Confidence 766655433
No 21
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=93.26 E-value=1.6 Score=37.96 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEE
Q 045940 89 DMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVIS 168 (189)
Q Consensus 89 ~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 168 (189)
++.+.-..++..||++|.-+|| .|+.| ++. .++|+|+++..+-... .-.+.+.+.|+ ...
T Consensus 262 g~~~~~~~l~~~aD~~v~~~gg-~t~~E---A~a------~g~PvI~~~~~~g~~~--~n~~~~~~~G~--------~~~ 321 (380)
T PRK13609 262 GYVENIDELFRVTSCMITKPGG-ITLSE---AAA------LGVPVILYKPVPGQEK--ENAMYFERKGA--------AVV 321 (380)
T ss_pred echhhHHHHHHhccEEEeCCCc-hHHHH---HHH------hCCCEEECCCCCCcch--HHHHHHHhCCc--------EEE
Confidence 3434444567899998875654 46544 443 6899988764322211 11122223332 334
Q ss_pred eCCHHHHHHHhhcCCC
Q 045940 169 AKNARDLLQGMEVPNL 184 (189)
Q Consensus 169 ~~~~ee~~~~l~~~~~ 184 (189)
..|++++.+.|.+...
T Consensus 322 ~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 322 IRDDEEVFAKTEALLQ 337 (380)
T ss_pred ECCHHHHHHHHHHHHC
Confidence 5788888877766544
No 22
>PRK13660 hypothetical protein; Provisional
Probab=92.10 E-value=4.7 Score=32.47 Aligned_cols=130 Identities=10% Similarity=0.029 Sum_probs=71.0
Q ss_pred CeEEEEEcCCCCCC------ChHH----HHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHHhc-----CCeEEEEe
Q 045940 4 FKRVCVFCGSNSGN------RKIF----SDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIFDG-----GCHVLGVI 67 (189)
Q Consensus 4 ~~~I~V~g~s~~~~------~~~~----~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~~~-----gg~viGv~ 67 (189)
|+++||-|...... +|.. ...-++|-+.+. .|+. +++||.- |+---+++-|++. .-+.+-++
T Consensus 1 mk~~~~TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e-~G~~wfi~ggal-G~d~wAaEvvl~LK~~yp~lkL~~~~ 78 (182)
T PRK13660 1 MKRLLVTGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLE-EGLEWVIISGQL-GVELWAAEVVLELKEEYPDLKLAVIT 78 (182)
T ss_pred CeEEEEeccCcccCCCccccChhhHHHHHHHHHHHHHHHH-CCCCEEEECCcc-hHHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 56777777655432 1221 122244444444 5777 6666655 9999999999985 23566667
Q ss_pred cCccccccccC----------CCCceEEe--------cCCHHHHHHHHHHhcCeeEEecCC---cchHHHHHHHHHHHhc
Q 045940 68 PKALVPIEISG----------QTVGDVLI--------VSDMHERKAEMARRADAFIALPGG---YGTMEELLEMITWSQL 126 (189)
Q Consensus 68 p~~~~~~e~~~----------~~~~~~~~--------~~~~~~R~~~m~~~sda~I~lpGG---~GTL~El~~~~~~~~~ 126 (189)
|-......+.. ...+.+.. +..|..|++.|++.||.+|++=-| -||---+- .+..+-
T Consensus 79 PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~--~A~k~~ 156 (182)
T PRK13660 79 PFEEHGENWNEANQEKLANILKQADFVKSISKRPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYE--AAKKKQ 156 (182)
T ss_pred CccchhhcCCHHHHHHHHHHHHhCCEEEEecCCCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHH--HHHHhh
Confidence 73222211110 11122221 113789999999999988886432 23431111 111111
Q ss_pred CCCCCcEEEEe
Q 045940 127 GIHDKPVGVLN 137 (189)
Q Consensus 127 ~~~~kPiill~ 137 (189)
..++.||.+++
T Consensus 157 ~~~~y~i~~I~ 167 (182)
T PRK13660 157 EKEDYPLDLIT 167 (182)
T ss_pred hccCceEEEeC
Confidence 23588998884
No 23
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=92.06 E-value=1.8 Score=29.36 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=43.3
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCc
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVER-KINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKA 70 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~-g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~ 70 (189)
++|.|-||... .|-. ..-..|-+.+++. ...||+||.+.|....+.+=|.+.|-.++-+-|++
T Consensus 4 ~rVli~GgR~~-~D~~--~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~adW 67 (71)
T PF10686_consen 4 MRVLITGGRDW-TDHE--LIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPADW 67 (71)
T ss_pred CEEEEEECCcc-ccHH--HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcCh
Confidence 45555555443 3333 3344566777774 56699999945999999999999988877776553
No 24
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=91.94 E-value=7.8 Score=33.63 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=54.7
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccC--c-----EEE
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARN--I-----VIS 168 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~--~-----i~~ 168 (189)
-++..||.++|-+-++-=+.| +.+ .+|||.++...+-.+.+..+++.|.+.|.+++-... . ..-
T Consensus 224 ~~La~ad~i~VT~DSvSMvsE---A~~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~p 294 (311)
T PF06258_consen 224 GFLAAADAIVVTEDSVSMVSE---AAA------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEP 294 (311)
T ss_pred HHHHhCCEEEEcCccHHHHHH---HHH------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCC
Confidence 356899999998887666544 443 689999998876555677788899999988764322 1 344
Q ss_pred eCCHHHHHHHhhc
Q 045940 169 AKNARDLLQGMEV 181 (189)
Q Consensus 169 ~~~~ee~~~~l~~ 181 (189)
.++.+.+.+.|.+
T Consensus 295 l~et~r~A~~i~~ 307 (311)
T PF06258_consen 295 LDETDRVAAEIRE 307 (311)
T ss_pred ccHHHHHHHHHHH
Confidence 5666667766654
No 25
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=91.80 E-value=2 Score=37.84 Aligned_cols=74 Identities=20% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEe
Q 045940 90 MHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISA 169 (189)
Q Consensus 90 ~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 169 (189)
+.++-..++..||.+|.-|||. |+.|. ++ .++|+++.+..+- ++..+ ...+.+.|+ -...
T Consensus 263 ~~~~~~~~~~~aDl~I~k~gg~-tl~EA---~a------~G~PvI~~~~~pg-qe~~N-~~~~~~~G~--------g~~~ 322 (391)
T PRK13608 263 YTKHMNEWMASSQLMITKPGGI-TISEG---LA------RCIPMIFLNPAPG-QELEN-ALYFEEKGF--------GKIA 322 (391)
T ss_pred ccchHHHHHHhhhEEEeCCchH-HHHHH---HH------hCCCEEECCCCCC-cchhH-HHHHHhCCc--------EEEe
Confidence 3344456779999999877764 65444 43 6899999874321 11111 011122222 2346
Q ss_pred CCHHHHHHHhhcCC
Q 045940 170 KNARDLLQGMEVPN 183 (189)
Q Consensus 170 ~~~ee~~~~l~~~~ 183 (189)
+|++++.+.|.+..
T Consensus 323 ~~~~~l~~~i~~ll 336 (391)
T PRK13608 323 DTPEEAIKIVASLT 336 (391)
T ss_pred CCHHHHHHHHHHHh
Confidence 67888777766544
No 26
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=91.62 E-value=4.9 Score=35.14 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=23.0
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEe
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLN 137 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~ 137 (189)
.++..||++|. -||.+|+.|+. ..++|.+++-
T Consensus 248 ~~~~~adlvIs-r~G~~t~~E~~---------~~g~P~I~iP 279 (352)
T PRK12446 248 DILAITDFVIS-RAGSNAIFEFL---------TLQKPMLLIP 279 (352)
T ss_pred HHHHhCCEEEE-CCChhHHHHHH---------HcCCCEEEEc
Confidence 46789996555 45567777775 3689999883
No 27
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=91.49 E-value=1.9 Score=37.23 Aligned_cols=31 Identities=35% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEE
Q 045940 95 AEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVL 136 (189)
Q Consensus 95 ~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill 136 (189)
..+...||.+|. ++|..|+ |.. ..++|+++.
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea~---------a~G~PvI~~ 286 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-ELA---------LLKVPMVVG 286 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HHH---------HhCCCEEEE
Confidence 456789998887 6677777 652 258999865
No 28
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.45 E-value=5.2 Score=41.01 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCCC-ChHHHHHHHH-HHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcC-----CeE--EEEecCc-cccc
Q 045940 5 KRVCVFCGSNSGN-RKIFSDAALD-LATQLVERKINLVYGGGSVGLMGLVSQTIFDGG-----CHV--LGVIPKA-LVPI 74 (189)
Q Consensus 5 ~~I~V~g~s~~~~-~~~~~~~A~~-lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~g-----g~v--iGv~p~~-~~~~ 74 (189)
-.|.|-||...-. .|.+.+.-++ |-+..-..|.-|+|||-.+|+|.-|.+++++++ +++ |||-|=. ...+
T Consensus 119 LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~nr 198 (1381)
T KOG3614|consen 119 LVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKNR 198 (1381)
T ss_pred EEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeech
Confidence 4788998875432 2433333333 333333479999999999999999999999864 244 5554410 0000
Q ss_pred ---------------cccC-------CCCceEEecC---------CHHHHHHHHHHh-------c---C---eeEEecCC
Q 045940 75 ---------------EISG-------QTVGDVLIVS---------DMHERKAEMARR-------A---D---AFIALPGG 110 (189)
Q Consensus 75 ---------------e~~~-------~~~~~~~~~~---------~~~~R~~~m~~~-------s---d---a~I~lpGG 110 (189)
+.+. +..+..+.++ ...-|+++=--. + + ..+++.||
T Consensus 199 ~~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg 278 (1381)
T KOG3614|consen 199 DDLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGG 278 (1381)
T ss_pred hhhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCC
Confidence 0011 1112222222 113333321101 1 1 47889999
Q ss_pred cchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHH-HHHHcCCCCcc
Q 045940 111 YGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFD-KGVEEGFIKSS 161 (189)
Q Consensus 111 ~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~-~~~~~g~i~~~ 161 (189)
.+|+.=+.+..+. ..+.|++++...|--.+++.++- ...+.|.++..
T Consensus 279 ~nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~ 326 (1381)
T KOG3614|consen 279 PNTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDA 326 (1381)
T ss_pred chHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHH
Confidence 9999877766641 24569999998888888888874 44555665544
No 29
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=91.27 E-value=4.1 Score=36.00 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=42.8
Q ss_pred HHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCC-------cc-ccCcEEE
Q 045940 97 MARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIK-------SS-ARNIVIS 168 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~-------~~-~~~~i~~ 168 (189)
....||++|.-. |..|+ |++ ..++|+|+...-..+..+.. ++++.-.|+. .. ..+.+.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~---------a~G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAA---------LIKTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHH---------HcCCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 558899887766 55677 654 36899987743323332221 2222222221 11 1233334
Q ss_pred eCCHHHHHHHhhcCCCCC
Q 045940 169 AKNARDLLQGMEVPNLLP 186 (189)
Q Consensus 169 ~~~~ee~~~~l~~~~~~~ 186 (189)
.-+|+.+.+.+.++...|
T Consensus 331 ~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 331 ECTPHPLAIALLLLLENG 348 (385)
T ss_pred CCCHHHHHHHHHHHhcCC
Confidence 447888888887776554
No 30
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=91.23 E-value=2.4 Score=37.08 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=41.2
Q ss_pred HHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCH
Q 045940 93 RKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNA 172 (189)
Q Consensus 93 R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 172 (189)
.-..++..||++|.-+| .+|+.| +++ .++|+++.+.-. ....-. .+.+.+.|. -..+.|+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~E---Ama------~g~PvI~~~~~p-gqe~gn-~~~i~~~g~--------g~~~~~~ 334 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAE---ALI------RGLPIILNGYIP-GQEEGN-VPYVVDNGF--------GAFSESP 334 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHH---HHH------cCCCEEEecCCC-ccchhh-HHHHHhCCc--------eeecCCH
Confidence 34456799999997555 478654 453 689999987411 011101 122222222 1234888
Q ss_pred HHHHHHhhcCC
Q 045940 173 RDLLQGMEVPN 183 (189)
Q Consensus 173 ee~~~~l~~~~ 183 (189)
+++.+.|.+..
T Consensus 335 ~~la~~i~~ll 345 (382)
T PLN02605 335 KEIARIVAEWF 345 (382)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 31
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=90.71 E-value=2 Score=37.50 Aligned_cols=70 Identities=20% Similarity=0.121 Sum_probs=40.8
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHH
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDL 175 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~ 175 (189)
.++..+|++| --||.||+.|.. .+++|++++-. +.| =..+.+.+.+.|.-..-.... -+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal---------~~GvP~v~~P~--~~d-Q~~~a~~~~~~G~g~~l~~~~----~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAAL---------RAGVPQLVVPF--FGD-QPFWAARVAELGAGPALDPRE----LTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHH---------HcCCCEEeeCC--CCC-cHHHHHHHHHCCCCCCCCccc----CCHHHH
Confidence 3457788887 567789987764 47899999843 233 223345566655322111111 267776
Q ss_pred HHHhhcC
Q 045940 176 LQGMEVP 182 (189)
Q Consensus 176 ~~~l~~~ 182 (189)
.+.+++.
T Consensus 363 ~~al~~~ 369 (401)
T cd03784 363 AAALRRL 369 (401)
T ss_pred HHHHHHH
Confidence 6666543
No 32
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=89.56 E-value=1 Score=34.63 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=22.3
Q ss_pred HHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 95 AEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 95 ~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
..+++.|| +||--||.||+.|+. ..++|.|++-..
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l---------~~g~P~I~ip~~ 101 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEAL---------ALGKPAIVIPLP 101 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHH---------HCT--EEEE--T
T ss_pred HHHHHHcC-EEEeCCCccHHHHHH---------HcCCCeeccCCC
Confidence 34568899 666778899997775 368999988443
No 33
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=88.96 E-value=0.86 Score=39.28 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHHhcCCeEEEEecCc
Q 045940 23 DAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKA 70 (189)
Q Consensus 23 ~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~ 70 (189)
..|.++.+.++..++. |+.+||. |...+++.|..+.+...+||+|..
T Consensus 45 g~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 45 GDAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecCC
Confidence 3577788888877775 6677777 999999999999988889999953
No 34
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=88.16 E-value=6.9 Score=33.00 Aligned_cols=37 Identities=27% Similarity=0.200 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 91 HERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
...-..++..||.+|. .|| +|+.|+. ..++|++++-.
T Consensus 232 ~~~m~~lm~~aDl~Is-~~G-~T~~E~~---------a~g~P~i~i~~ 268 (279)
T TIGR03590 232 VENMAELMNEADLAIG-AAG-STSWERC---------CLGLPSLAICL 268 (279)
T ss_pred HHHHHHHHHHCCEEEE-CCc-hHHHHHH---------HcCCCEEEEEe
Confidence 3444456789999999 566 8987765 25899998854
No 35
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=87.74 E-value=16 Score=31.07 Aligned_cols=104 Identities=17% Similarity=0.092 Sum_probs=53.7
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCC-eEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcchH
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGC-HVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTM 114 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg-~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL 114 (189)
++.+||+|+. | .+.+.+.-.+... .++--.++.. ..... ..+.+.....+.-.-++..||++|.= ||.+|+
T Consensus 189 ~~iLv~~g~~-~-~~~l~~~l~~~~~~~~i~~~~~~~-~~~~~----~~v~~~~~~~~~~~~~l~~ad~vI~~-~G~~t~ 260 (321)
T TIGR00661 189 DYILVYIGFE-Y-RYKILELLGKIANVKFVCYSYEVA-KNSYN----ENVEIRRITTDNFKELIKNAELVITH-GGFSLI 260 (321)
T ss_pred CcEEEECCcC-C-HHHHHHHHHhCCCeEEEEeCCCCC-ccccC----CCEEEEECChHHHHHHHHhCCEEEEC-CChHHH
Confidence 5678998654 5 5666554333333 2221122111 00111 12222221123344566888988775 567887
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCC
Q 045940 115 EELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGF 157 (189)
Q Consensus 115 ~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~ 157 (189)
.|. + .+++|++++...+.++.... .+.+.+.|.
T Consensus 261 ~Ea---~------~~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 261 SEA---L------SLGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHH---H------HcCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 665 3 37899999876555554322 334555554
No 36
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=86.80 E-value=18 Score=30.68 Aligned_cols=69 Identities=22% Similarity=0.133 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCC
Q 045940 92 ERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKN 171 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 171 (189)
..-..+...||.+|.=+| |..+|. . ..++|++.++..+-+..+ .+.|. .+.+.+|
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea---~------~~g~PvI~~~~~~~~~~~-------~~~g~-------~~~~~~~ 323 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEA---S------FLGVPVLNLRDRTERPET-------VESGT-------NVLVGTD 323 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhh---h------hcCCCEEeeCCCCccchh-------hheee-------EEecCCC
Confidence 444566788999986665 444444 2 257999998743322211 22221 1223346
Q ss_pred HHHHHHHhhcCCCC
Q 045940 172 ARDLLQGMEVPNLL 185 (189)
Q Consensus 172 ~ee~~~~l~~~~~~ 185 (189)
++++.+.|.+....
T Consensus 324 ~~~i~~~i~~ll~~ 337 (363)
T cd03786 324 PEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888887765443
No 37
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=85.93 E-value=21 Score=30.47 Aligned_cols=81 Identities=16% Similarity=0.082 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCC--CchHHHHHHHHHHHcCCCCccccCc
Q 045940 88 SDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDG--YYDSLLRFFDKGVEEGFIKSSARNI 165 (189)
Q Consensus 88 ~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g--~~~~l~~~l~~~~~~g~i~~~~~~~ 165 (189)
.++...-..++..||++|. .+|.+|+-|. + ..++|++.....+ ..+... ..+.+.+.|. ..
T Consensus 240 ~g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea---~------~~g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~~------g~ 302 (357)
T PRK00726 240 VPFIDDMAAAYAAADLVIC-RAGASTVAEL---A------AAGLPAILVPLPHAADDHQTA-NARALVDAGA------AL 302 (357)
T ss_pred eehHhhHHHHHHhCCEEEE-CCCHHHHHHH---H------HhCCCEEEecCCCCCcCcHHH-HHHHHHHCCC------EE
Confidence 3443334566789999986 5556776444 4 3689999886432 111111 1223333331 22
Q ss_pred EEEeCC--HHHHHHHhhcCCCC
Q 045940 166 VISAKN--ARDLLQGMEVPNLL 185 (189)
Q Consensus 166 i~~~~~--~ee~~~~l~~~~~~ 185 (189)
+.-.+| ++++.+.|++....
T Consensus 303 ~~~~~~~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 303 LIPQSDLTPEKLAEKLLELLSD 324 (357)
T ss_pred EEEcccCCHHHHHHHHHHHHcC
Confidence 222334 88988888765544
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=85.91 E-value=17 Score=32.52 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHH-HHHH--HHHHHcCCCCccccCc
Q 045940 89 DMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSL-LRFF--DKGVEEGFIKSSARNI 165 (189)
Q Consensus 89 ~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l-~~~l--~~~~~~g~i~~~~~~~ 165 (189)
.|..|-..++..||.+|.+ ||+.|.=|+ + ..+||.+++-.. .+- ..++ +++.+-|.++-=..+.
T Consensus 283 ~f~~~~~~ll~gA~~vVSm-~GYNTvCeI---L------s~~k~aLivPr~---~p~eEQliRA~Rl~~LGL~dvL~pe~ 349 (400)
T COG4671 283 EFRNDFESLLAGARLVVSM-GGYNTVCEI---L------SFGKPALIVPRA---APREEQLIRAQRLEELGLVDVLLPEN 349 (400)
T ss_pred EhhhhHHHHHHhhheeeec-ccchhhhHH---H------hCCCceEEeccC---CCcHHHHHHHHHHHhcCcceeeCccc
Confidence 4555566677888988887 568887554 5 368999888432 111 2333 4677777766544455
Q ss_pred EEEeCCHHHHHHHhhcCCCCC
Q 045940 166 VISAKNARDLLQGMEVPNLLP 186 (189)
Q Consensus 166 i~~~~~~ee~~~~l~~~~~~~ 186 (189)
+ +++.+.++|+...+.|
T Consensus 350 l----t~~~La~al~~~l~~P 366 (400)
T COG4671 350 L----TPQNLADALKAALARP 366 (400)
T ss_pred C----ChHHHHHHHHhcccCC
Confidence 4 4888888887665533
No 39
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=85.39 E-value=25 Score=30.95 Aligned_cols=82 Identities=18% Similarity=0.101 Sum_probs=45.8
Q ss_pred EEecCCHHHHHHHHHHhcCeeEEec---CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCc
Q 045940 84 VLIVSDMHERKAEMARRADAFIALP---GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKS 160 (189)
Q Consensus 84 ~~~~~~~~~R~~~m~~~sda~I~lp---GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~ 160 (189)
+++.+++. .-..+...||.+++.+ .+.|.- +.|+++ .++||+.-...+-+.++. +.+.+.|
T Consensus 304 v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma------~G~PVI~g~~~~~~~e~~---~~~~~~g---- 367 (425)
T PRK05749 304 VLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAA------FGVPVISGPHTFNFKEIF---ERLLQAG---- 367 (425)
T ss_pred EEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHH------hCCCEEECCCccCHHHHH---HHHHHCC----
Confidence 44455444 3345668999876642 123332 567774 799998643212233333 3332333
Q ss_pred cccCcEEEeCCHHHHHHHhhcCCCC
Q 045940 161 SARNIVISAKNARDLLQGMEVPNLL 185 (189)
Q Consensus 161 ~~~~~i~~~~~~ee~~~~l~~~~~~ 185 (189)
.+...+|++++.+.|.+....
T Consensus 368 ----~~~~~~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 368 ----AAIQVEDAEDLAKAVTYLLTD 388 (425)
T ss_pred ----CeEEECCHHHHHHHHHHHhcC
Confidence 344577888888888765443
No 40
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.96 E-value=8.4 Score=33.45 Aligned_cols=62 Identities=27% Similarity=0.320 Sum_probs=43.5
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe---------------------------------------EEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKIN---------------------------------------LVY 41 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~---------------------------------------lv~ 41 (189)
|+++++|+++.-.. .+...+.+.++.++|.++|+. +|+
T Consensus 2 ~~~~~~I~iv~~~~---~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 78 (306)
T PRK03372 2 MTASRRVLLVAHTG---RDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV 78 (306)
T ss_pred CCCccEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE
Confidence 78999999997643 356667778888777655533 233
Q ss_pred cCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 42 GGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 42 GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
=||. |.|=.+++-+...+-.++||
T Consensus 79 lGGD-GT~L~aar~~~~~~~PilGI 102 (306)
T PRK03372 79 LGGD-GTILRAAELARAADVPVLGV 102 (306)
T ss_pred EcCC-HHHHHHHHHhccCCCcEEEE
Confidence 3456 87777777777777788888
No 41
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=82.62 E-value=3.9 Score=31.67 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 21 FSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 21 ~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
+-..|.-+.+.|+..|+.++++|.- --.+.+++.|.+....+|||.
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred cccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEE
Confidence 4456778889999999999999988 778999999999999999993
No 42
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=80.51 E-value=16 Score=29.21 Aligned_cols=44 Identities=30% Similarity=0.237 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCeeEEecCC------cchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 90 MHERKAEMARRADAFIALPGG------YGTMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 90 ~~~R~~~m~~~sda~I~lpGG------~GTL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
+.+=...++++||++|+.-=+ .||.-|+-.++. .+||++.+..+
T Consensus 58 i~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~A------lgKPv~~~~~d 107 (172)
T COG3613 58 IYEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIA------LGKPVYAYRKD 107 (172)
T ss_pred HHHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHH------cCCceEEEeec
Confidence 344455677999998887654 789999999885 68999988654
No 43
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.47 E-value=12 Score=32.30 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=43.6
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE-----------------------------------EEcCCC
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINL-----------------------------------VYGGGS 45 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~l-----------------------------------v~GGg~ 45 (189)
-++|++|+|+.-.. .+...+.+.++.++|.++|+.+ ++=||.
T Consensus 2 ~~~~~~i~ii~~~~---~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD 78 (296)
T PRK04539 2 NSPFHNIGIVTRPN---TPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGD 78 (296)
T ss_pred CCCCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCc
Confidence 06778899997653 4667778888888886665432 233456
Q ss_pred CChhHHHHHHHHhcCCeEEEEe
Q 045940 46 VGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 46 ~GlM~a~a~ga~~~gg~viGv~ 67 (189)
|.|=.+++-+...+-.++||-
T Consensus 79 -GT~L~aa~~~~~~~~PilGIN 99 (296)
T PRK04539 79 -GTFLSVAREIAPRAVPIIGIN 99 (296)
T ss_pred -HHHHHHHHHhcccCCCEEEEe
Confidence 888777777766677888883
No 44
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=80.17 E-value=32 Score=30.80 Aligned_cols=90 Identities=27% Similarity=0.317 Sum_probs=52.8
Q ss_pred HHCCCeEEEcCCCCC----hhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEec
Q 045940 33 VERKINLVYGGGSVG----LMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALP 108 (189)
Q Consensus 33 a~~g~~lv~GGg~~G----lM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lp 108 (189)
+.+....++=|.. + +-+.+.+...+.+.++|=-+.. ... . ..+-....++....+. ..++..||+|| -.
T Consensus 235 ~d~~~vyvslGt~-~~~~~l~~~~~~a~~~l~~~vi~~~~~-~~~-~-~~~~p~n~~v~~~~p~--~~~l~~ad~vI-~h 307 (406)
T COG1819 235 ADRPIVYVSLGTV-GNAVELLAIVLEALADLDVRVIVSLGG-ARD-T-LVNVPDNVIVADYVPQ--LELLPRADAVI-HH 307 (406)
T ss_pred CCCCeEEEEcCCc-ccHHHHHHHHHHHHhcCCcEEEEeccc-ccc-c-cccCCCceEEecCCCH--HHHhhhcCEEE-ec
Confidence 4445555544443 6 5567777777788887766543 111 0 1111112334444432 23778898876 58
Q ss_pred CCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 109 GGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 109 GG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
||.||..|.. .+++|++++-.
T Consensus 308 GG~gtt~eaL---------~~gvP~vv~P~ 328 (406)
T COG1819 308 GGAGTTSEAL---------YAGVPLVVIPD 328 (406)
T ss_pred CCcchHHHHH---------HcCCCEEEecC
Confidence 9999987664 47899998854
No 45
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=79.02 E-value=14 Score=30.97 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=49.3
Q ss_pred HCCCeEEEcCCCCChhHHHHHHHHh---cC-CeEEEEecCccccccccCCCCceEEec--CCHHHHHHHHHHhcCeeEEe
Q 045940 34 ERKINLVYGGGSVGLMGLVSQTIFD---GG-CHVLGVIPKALVPIEISGQTVGDVLIV--SDMHERKAEMARRADAFIAL 107 (189)
Q Consensus 34 ~~g~~lv~GGg~~GlM~a~a~ga~~---~g-g~viGv~p~~~~~~e~~~~~~~~~~~~--~~~~~R~~~m~~~sda~I~l 107 (189)
++|..++-||.. +-.+|....++. .| +.|.-+.|..... +. ....-+++.. ..+.++-..+...+|++++
T Consensus 23 ~~G~vliiaGs~-~~~GA~ila~l~~~~~g~~~v~~~~~~~~~~-~i-~~~~pe~~~~~~~~~~~~~~~~~~~~davvi- 98 (272)
T TIGR00196 23 QYGRVLIIGGSD-DYSGAPLLAALAALRAGAGLVTVAAPENVIT-LI-NSVSPELIVHRLGWKVDEDEELLERYDVVVI- 98 (272)
T ss_pred CCCeEEEEeCCC-CCCcHHHHHHHHHHHhCCCeEEEEEchhhHH-HH-hhcCCEEEEecchhhHHHHHhhhccCCEEEE-
Confidence 358888888876 666665544443 33 3555555542111 11 1111122221 1223333344466776665
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 045940 108 PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDG 140 (189)
Q Consensus 108 pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g 140 (189)
.+|.++-+.+.++..... .+.+|+ ++|.+|
T Consensus 99 g~Gl~~~~~~~~l~~~~~--~~~~pv-VlDa~g 128 (272)
T TIGR00196 99 GPGLGQDPSFKKAVEEVL--ELDKPV-VLDADA 128 (272)
T ss_pred cCCCCCCHHHHHHHHHHH--hcCCCE-EEEhHH
Confidence 666888665443333222 357886 667654
No 46
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=78.28 E-value=6.1 Score=33.59 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=31.1
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
|+|+ +|+|.+|......+.-.+.++.+.+.|.+.||.++.
T Consensus 1 ~~~~-~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 1 MKNE-KIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CCCc-EEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 6655 677776666556677789999999999999998654
No 47
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=77.92 E-value=16 Score=31.42 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=40.9
Q ss_pred CCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC------------------------------eEEEcCCCCChhHH
Q 045940 2 GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKI------------------------------NLVYGGGSVGLMGL 51 (189)
Q Consensus 2 ~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~------------------------------~lv~GGg~~GlM~a 51 (189)
+++++|+|+.-.. .+...+.+.++.++|.++|+ .+++-||. |.|--
T Consensus 3 ~~~~~v~iv~~~~---~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~ 78 (291)
T PRK02155 3 SQFKTVALIGRYQ---TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTMLG 78 (291)
T ss_pred CcCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHHH
Confidence 6788899996554 34555566666666654443 24555677 88877
Q ss_pred HHHHHHhcCCeEEEE
Q 045940 52 VSQTIFDGGCHVLGV 66 (189)
Q Consensus 52 ~a~ga~~~gg~viGv 66 (189)
+++.....+-.++||
T Consensus 79 ~~~~~~~~~~pilGI 93 (291)
T PRK02155 79 IGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHhcCCCCCEEEE
Confidence 777776667788888
No 48
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.32 E-value=17 Score=31.26 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=42.6
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCCCChhH
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKIN------------------------------LVYGGGSVGLMG 50 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~------------------------------lv~GGg~~GlM~ 50 (189)
-++|++|+|+.-.. ++...+.+.++.++|.++|+. +++=||. |.+-
T Consensus 2 ~~~~~~i~iv~~~~---~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGD-GT~L 77 (292)
T PRK03378 2 NNHFKCIGIVGHPR---HPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGD-GNML 77 (292)
T ss_pred CccCCEEEEEEeCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCc-HHHH
Confidence 06788899997643 466777788888877655533 3334556 8777
Q ss_pred HHHHHHHhcCCeEEEE
Q 045940 51 LVSQTIFDGGCHVLGV 66 (189)
Q Consensus 51 a~a~ga~~~gg~viGv 66 (189)
.+++.+...+-.++||
T Consensus 78 ~aa~~~~~~~~Pilgi 93 (292)
T PRK03378 78 GAARVLARYDIKVIGI 93 (292)
T ss_pred HHHHHhcCCCCeEEEE
Confidence 7777776666678887
No 49
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.50 E-value=17 Score=31.37 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=40.1
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCCCChhH
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKIN------------------------------LVYGGGSVGLMG 50 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~------------------------------lv~GGg~~GlM~ 50 (189)
|.+|++|+|+.-... +...+.++++.++|.++|+. +++-||. |.+-
T Consensus 1 ~~~~~~v~iv~~~~k---~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l 76 (295)
T PRK01231 1 MPSFRNIGLIGRLGS---SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGD-GSLL 76 (295)
T ss_pred CCCCCEEEEEecCCC---HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCc-HHHH
Confidence 667889999976543 45556666776666554433 4444556 7666
Q ss_pred HHHHHHHhcCCeEEEEe
Q 045940 51 LVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 51 a~a~ga~~~gg~viGv~ 67 (189)
.+++.+...+-.++||-
T Consensus 77 ~~~~~~~~~~~Pvlgin 93 (295)
T PRK01231 77 GAARALARHNVPVLGIN 93 (295)
T ss_pred HHHHHhcCCCCCEEEEe
Confidence 66666655566788883
No 50
>PRK00861 putative lipid kinase; Reviewed
Probab=74.63 E-value=7.1 Score=33.14 Aligned_cols=43 Identities=30% Similarity=0.509 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCCChhHHHHHHHHhcCCeEEEEecC
Q 045940 25 ALDLATQLVERKI-NLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPK 69 (189)
Q Consensus 25 A~~lg~~la~~g~-~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~ 69 (189)
|.++.+..++.++ .||..||. |...++..+.... +..+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~ 89 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPR 89 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcC
Confidence 4455555655554 46777888 9999999999865 467999994
No 51
>PRK13337 putative lipid kinase; Reviewed
Probab=73.88 E-value=9 Score=32.65 Aligned_cols=44 Identities=34% Similarity=0.437 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCCChhHHHHHHHHhcCC-eEEEEecC
Q 045940 25 ALDLATQLVERKI-NLVYGGGSVGLMGLVSQTIFDGGC-HVLGVIPK 69 (189)
Q Consensus 25 A~~lg~~la~~g~-~lv~GGg~~GlM~a~a~ga~~~gg-~viGv~p~ 69 (189)
|.++.+.+++.++ .||..||. |...++..|....+- ..+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECC
Confidence 4445555555554 46667777 999999999876543 47999994
No 52
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=73.09 E-value=8.5 Score=28.37 Aligned_cols=40 Identities=25% Similarity=0.437 Sum_probs=25.3
Q ss_pred HHHhcCe--eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEe
Q 045940 97 MARRADA--FIALPGGYGTMEELLEMITWSQLGIHDKPVGVLN 137 (189)
Q Consensus 97 m~~~sda--~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~ 137 (189)
+....+. .|++-||=||+.|+...+.-.... ...|+.++-
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~~~-~~~~l~iiP 89 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGLMGSDRE-DKPPLGIIP 89 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHHCTSTSS-S--EEEEEE
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHHhhcCCC-ccceEEEec
Confidence 4455554 888899999999998877311100 122777774
No 53
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=72.74 E-value=9.2 Score=32.41 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCCChhHHHHHHHHhcCC---eEEEEecC
Q 045940 25 ALDLATQLVERKI-NLVYGGGSVGLMGLVSQTIFDGGC---HVLGVIPK 69 (189)
Q Consensus 25 A~~lg~~la~~g~-~lv~GGg~~GlM~a~a~ga~~~gg---~viGv~p~ 69 (189)
|.++.+.+++.++ .||.-||. |...++..|..+.+. ..+||+|.
T Consensus 41 a~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 41 AQRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 4456666656554 46666677 999999999986542 25999994
No 54
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=72.45 E-value=5.7 Score=32.32 Aligned_cols=34 Identities=26% Similarity=0.151 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCC
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERK 36 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g 36 (189)
++++|+|||||=++....+...|+++.+.+.---
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~ 34 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDK 34 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 5789999999999888889999999998886654
No 55
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=72.07 E-value=8.1 Score=28.49 Aligned_cols=42 Identities=29% Similarity=0.403 Sum_probs=29.4
Q ss_pred HHHHHHHHCCC--eEEEcCCCCChhHHHHHHHHhcCC---eEEEEecC
Q 045940 27 DLATQLVERKI--NLVYGGGSVGLMGLVSQTIFDGGC---HVLGVIPK 69 (189)
Q Consensus 27 ~lg~~la~~g~--~lv~GGg~~GlM~a~a~ga~~~gg---~viGv~p~ 69 (189)
++.+....... .||..||. |....+..+..+.+. ..+|++|.
T Consensus 44 ~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 44 ALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp HHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-
T ss_pred HHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecC
Confidence 44444444444 67777788 999999999988765 47999994
No 56
>PRK13055 putative lipid kinase; Reviewed
Probab=71.92 E-value=9.2 Score=33.20 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCCChhHHHHHHHHhcC-CeEEEEecC
Q 045940 25 ALDLATQLVERKI-NLVYGGGSVGLMGLVSQTIFDGG-CHVLGVIPK 69 (189)
Q Consensus 25 A~~lg~~la~~g~-~lv~GGg~~GlM~a~a~ga~~~g-g~viGv~p~ 69 (189)
|.++.+..++.++ .||-.||. |.+.+++.+....+ ...+||+|.
T Consensus 48 a~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 48 AKNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECC
Confidence 4445555555554 46667777 99999999988654 356999994
No 57
>PRK13054 lipid kinase; Reviewed
Probab=71.09 E-value=11 Score=32.04 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCCChhHHHHHHHHhcC-C--eEEEEecC
Q 045940 25 ALDLATQLVERKI-NLVYGGGSVGLMGLVSQTIFDGG-C--HVLGVIPK 69 (189)
Q Consensus 25 A~~lg~~la~~g~-~lv~GGg~~GlM~a~a~ga~~~g-g--~viGv~p~ 69 (189)
|.++.+.+++.++ .||..||. |....++.+..... + ..+||+|.
T Consensus 45 a~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 45 AARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 3445555545454 46677777 99999999887642 2 46999994
No 58
>PRK11914 diacylglycerol kinase; Reviewed
Probab=70.84 E-value=61 Score=27.46 Aligned_cols=28 Identities=25% Similarity=0.600 Sum_probs=15.7
Q ss_pred eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEE
Q 045940 104 FIALPGGYGTMEELLEMITWSQLGIHDKPVGVL 136 (189)
Q Consensus 104 ~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill 136 (189)
.|+.-||=||++|+...+. ..+.|+.++
T Consensus 67 ~vvv~GGDGTi~evv~~l~-----~~~~~lgii 94 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLA-----GTDIPLGII 94 (306)
T ss_pred EEEEECCchHHHHHhHHhc-----cCCCcEEEE
Confidence 3556666777776665542 134556555
No 59
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=70.06 E-value=4.9 Score=33.48 Aligned_cols=36 Identities=33% Similarity=0.650 Sum_probs=29.5
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCch
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYD 143 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~ 143 (189)
-+++.||++|.+.+.+| +|++ .++||+++++.. ||+
T Consensus 195 ~Ll~~s~~VvtinStvG-----lEAl------l~gkpVi~~G~~-~Y~ 230 (269)
T PF05159_consen 195 ELLEQSDAVVTINSTVG-----LEAL------LHGKPVIVFGRA-FYA 230 (269)
T ss_pred HHHHhCCEEEEECCHHH-----HHHH------HcCCceEEecCc-ccC
Confidence 56799999999999877 5666 489999999875 775
No 60
>PRK08105 flavodoxin; Provisional
Probab=70.05 E-value=6.2 Score=30.29 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|++|.|+.+|..++.+ +.|+++.+.+.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnte---~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNAL---LVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCceE
Confidence 4578999999887555 677788899988887754
No 61
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.04 E-value=8.6 Score=33.22 Aligned_cols=107 Identities=24% Similarity=0.293 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCc
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVG 82 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~ 82 (189)
+|++|.++.-.. .+...+.+.++.++|.++|+.+..---. . ... +. +
T Consensus 2 ~~kkv~lI~n~~---~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~---------~~~-----~~--------~------- 48 (305)
T PRK02645 2 QLKQVIIAYKAG---SSQAKEAAERCAKQLEARGCKVLMGPSG-P---------KDN-----PY--------P------- 48 (305)
T ss_pred CcCEEEEEEeCC---CHHHHHHHHHHHHHHHHCCCEEEEecCc-h---------hhc-----cc--------c-------
Confidence 577888886542 3556677888888899999886653211 0 000 00 0
Q ss_pred eEEecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC---CCchHH------HHHHHHHH
Q 045940 83 DVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD---GYYDSL------LRFFDKGV 153 (189)
Q Consensus 83 ~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~---g~~~~l------~~~l~~~~ 153 (189)
. . .....+..|.+|++ ||=||+.+.+..+. ..++|++.+|.. ||.... .+.++++.
T Consensus 49 ~------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 49 V------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred c------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHH
Confidence 0 0 00111245666666 89999988876653 357999999862 677653 35566655
Q ss_pred HcCC
Q 045940 154 EEGF 157 (189)
Q Consensus 154 ~~g~ 157 (189)
+..|
T Consensus 114 ~g~~ 117 (305)
T PRK02645 114 EDRY 117 (305)
T ss_pred cCCc
Confidence 5443
No 62
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=68.89 E-value=7.4 Score=30.97 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=50.6
Q ss_pred HhcCeeEEecCCcchHHHHHHHHHHH-----hcC-CCCCcEEEEeC--CCCch--HHHHHHHHHHHcCC--CCccc----
Q 045940 99 RRADAFIALPGGYGTMEELLEMITWS-----QLG-IHDKPVGVLNV--DGYYD--SLLRFFDKGVEEGF--IKSSA---- 162 (189)
Q Consensus 99 ~~sda~I~lpGG~GTL~El~~~~~~~-----~~~-~~~kPiill~~--~g~~~--~l~~~l~~~~~~g~--i~~~~---- 162 (189)
..+|++|+.|-..+|+.-+..=++-. -+. ..++|+++.-. ...|+ -..+.++.+.+.|+ ++++.
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la 154 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLA 154 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCccc
Confidence 37899999999999998776432211 111 24789998731 23775 33445666666663 34433
Q ss_pred --cCcEEEeCCHHHHHHHhhcC
Q 045940 163 --RNIVISAKNARDLLQGMEVP 182 (189)
Q Consensus 163 --~~~i~~~~~~ee~~~~l~~~ 182 (189)
..-.=-..++++++++++++
T Consensus 155 ~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 155 CGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred CCCccccCCCCHHHHHHHHHHh
Confidence 11122335788888888654
No 63
>PRK09004 FMN-binding protein MioC; Provisional
Probab=68.27 E-value=6.3 Score=30.14 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|++|.|+.+|..++.+ +.|+++.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGnae---~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGAE---YVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHHcCCceE
Confidence 5578999999887555 667788888888877644
No 64
>PRK11914 diacylglycerol kinase; Reviewed
Probab=68.09 E-value=12 Score=31.78 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCCChhHHHHHHHHhcCCeEEEEecC
Q 045940 24 AALDLATQLVERKI-NLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPK 69 (189)
Q Consensus 24 ~A~~lg~~la~~g~-~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~ 69 (189)
.|.++.+.+++.++ .||..||. |...+++.+.... ...+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeC
Confidence 45556666666665 36667778 9999999988654 456999994
No 65
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=68.02 E-value=43 Score=25.51 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=36.0
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCC-----------------CchHHHHHHHHHHHcCCCCcccc
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDG-----------------YYDSLLRFFDKGVEEGFIKSSAR 163 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g-----------------~~~~l~~~l~~~~~~g~i~~~~~ 163 (189)
.+++++.--+++--.+++++..-. ... |||+++.... =++-+...+ ..
T Consensus 55 t~~I~ly~E~~~d~~~f~~~~~~a--~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~------------~~ 119 (138)
T PF13607_consen 55 TRVIVLYLEGIGDGRRFLEAARRA--ARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAAL------------RQ 119 (138)
T ss_dssp --EEEEEES--S-HHHHHHHHHHH--CCC-S-EEEEE---------------------HHHHHHHH------------HH
T ss_pred CCEEEEEccCCCCHHHHHHHHHHH--hcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHH------------HH
Confidence 457777777888888888776422 233 9999997642 111111111 12
Q ss_pred CcEEEeCCHHHHHHHhh
Q 045940 164 NIVISAKNARDLLQGME 180 (189)
Q Consensus 164 ~~i~~~~~~ee~~~~l~ 180 (189)
--+..++|+||+++..+
T Consensus 120 aGv~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 120 AGVVRVDDLDELLDAAK 136 (138)
T ss_dssp CTEEEESSHHHHHHHHC
T ss_pred cCceEECCHHHHHHHHH
Confidence 34789999999998764
No 66
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=67.60 E-value=7.7 Score=28.67 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=22.7
Q ss_pred eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEe
Q 045940 104 FIALPGGYGTMEELLEMITWSQLGIHDKPVGVLN 137 (189)
Q Consensus 104 ~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~ 137 (189)
.|+.-||=||++|+...+--........|+.++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeC
Confidence 7888999999999987773211111115787773
No 67
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=67.10 E-value=16 Score=32.03 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=35.6
Q ss_pred HhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC-----CCchHHHHHHH
Q 045940 99 RRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD-----GYYDSLLRFFD 150 (189)
Q Consensus 99 ~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~-----g~~~~l~~~l~ 150 (189)
+..|+|||+-| .-||+|-..++.++-- .+||||+.+.- --.|...+++.
T Consensus 76 ~~~dG~VVtHG-TDTme~TA~~Ls~~l~--~~kPVVlTGsmrp~~~~~sDg~~NL~~ 129 (336)
T TIGR00519 76 DDYDGFVITHG-TDTMAYTAAALSFMLE--TPKPVVFTGAQRSSDRPSSDAALNLLC 129 (336)
T ss_pred hcCCeEEEccC-CchHHHHHHHHHHHcC--CCCCEEEECCCCCCCCcCcchHHHHHH
Confidence 45899999986 8999999888876443 38999998752 23455555554
No 68
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=66.79 E-value=27 Score=31.62 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHH-----CCCeEEEcCCCCC---hhHHHHHHHHhcCC--eEEEEecCccccccccCCCCceEEecCCHHH
Q 045940 23 DAALDLATQLVE-----RKINLVYGGGSVG---LMGLVSQTIFDGGC--HVLGVIPKALVPIEISGQTVGDVLIVSDMHE 92 (189)
Q Consensus 23 ~~A~~lg~~la~-----~g~~lv~GGg~~G---lM~a~a~ga~~~gg--~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~ 92 (189)
+.|..+++.+|+ .+...+|||-+.| ||.|+...+.+.+- +++.+....+.. .+..-+.-..|..
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~------~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN------DFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH------HHHHHHHhhhHHH
Confidence 567777777777 4677888875544 89999999999876 566653321110 0000011123322
Q ss_pred HHHHHHHhcCeeEE-----ecCCcchHHHHHHHHHHHhcCCCCCcEEEE
Q 045940 93 RKAEMARRADAFIA-----LPGGYGTMEELLEMITWSQLGIHDKPVGVL 136 (189)
Q Consensus 93 R~~~m~~~sda~I~-----lpGG~GTL~El~~~~~~~~~~~~~kPiill 136 (189)
=|... ..|.+++ +.|.-.|.+|+|.+.. .+...+|-|++.
T Consensus 170 Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvlt 214 (408)
T COG0593 170 FKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVLT 214 (408)
T ss_pred HHHhh--ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEEE
Confidence 22222 6777664 7788899999998874 333455655444
No 69
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=66.31 E-value=21 Score=29.63 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCeeEEec----CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcE
Q 045940 91 HERKAEMARRADAFIALP----GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIV 166 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lp----GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 166 (189)
.+....+...||++|... .|+|.- +.|++. .++|++..+..+..+.+.. ......+
T Consensus 254 ~~~~~~~~~~ad~~i~ps~~~~e~~g~~--~~Ea~~------~g~Pvi~~~~~~~~~~i~~------------~~~~g~~ 313 (357)
T cd03795 254 DEEKAALLAACDVFVFPSVERSEAFGIV--LLEAMA------FGKPVISTEIGTGGSYVNL------------HGVTGLV 313 (357)
T ss_pred HHHHHHHHHhCCEEEeCCcccccccchH--HHHHHH------cCCCEEecCCCCchhHHhh------------CCCceEE
Confidence 344556778899988652 455643 566664 7999998876544332211 0112233
Q ss_pred EEeCCHHHHHHHhhcCCCC
Q 045940 167 ISAKNARDLLQGMEVPNLL 185 (189)
Q Consensus 167 ~~~~~~ee~~~~l~~~~~~ 185 (189)
.-.+|++++.+.|.+....
T Consensus 314 ~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 314 VPPGDPAALAEAIRRLLED 332 (357)
T ss_pred eCCCCHHHHHHHHHHHHHC
Confidence 4456888888888765443
No 70
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=66.13 E-value=97 Score=27.54 Aligned_cols=36 Identities=39% Similarity=0.333 Sum_probs=23.8
Q ss_pred HHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 045940 95 AEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGY 141 (189)
Q Consensus 95 ~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~ 141 (189)
...+..||++|.-.| .-| .|+. ..++|++++-..+.
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E~a---------~lg~P~Ilip~~~~ 326 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQAV---------GLGKPVIQLPGKGP 326 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HHHH---------HhCCCEEEEeCCCC
Confidence 345689999998866 344 4432 25899998863333
No 71
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=65.91 E-value=15 Score=30.23 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHH----CCCe-EEE--cCCC-CChhHHHHHHHHhcC
Q 045940 22 SDAALDLATQLVE----RKIN-LVY--GGGS-VGLMGLVSQTIFDGG 60 (189)
Q Consensus 22 ~~~A~~lg~~la~----~g~~-lv~--GGg~-~GlM~a~a~ga~~~g 60 (189)
.+.|..+|+.||+ .|+. ||. ||.. -|-++|.|+||+++|
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~G 208 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVG 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcC
Confidence 4788999999988 4665 443 4433 589999999999987
No 72
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=65.13 E-value=12 Score=30.14 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=51.4
Q ss_pred hcCeeEEecCCcchHHHHHHHHHH-------HhcCCCCCcEEEEeCCCCchHH--HHHHHHHHHcCCCC-ccccCcEEEe
Q 045940 100 RADAFIALPGGYGTMEELLEMITW-------SQLGIHDKPVGVLNVDGYYDSL--LRFFDKGVEEGFIK-SSARNIVISA 169 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~-------~~~~~~~kPiill~~~g~~~~l--~~~l~~~~~~g~i~-~~~~~~i~~~ 169 (189)
.+|++|+.|-..+|+.-+..=++- ...-..++|+++.-.+ .|..- ++-++.+.+.|+.= +.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~-M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRE-TPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEecc-ccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 589999999999999877542210 0111357999988754 77633 33455667777532 2233455555
Q ss_pred CCHHHHHHHhh
Q 045940 170 KNARDLLQGME 180 (189)
Q Consensus 170 ~~~ee~~~~l~ 180 (189)
.+.+++++++.
T Consensus 157 ~~~~~~~~~~v 167 (185)
T PRK06029 157 QTLEDMVDQTV 167 (185)
T ss_pred CCHHHHHHHHH
Confidence 78898888773
No 73
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=64.85 E-value=27 Score=26.38 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 20 IFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 20 ~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
.+-..+.-+...|..+||.+++-|.. =-.+.+.+.|.+.+..++++
T Consensus 14 ~Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 14 GHDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred ccHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 35566677788888999999999987 67788999999999999999
No 74
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=64.45 E-value=8.3 Score=29.74 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 2 GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 2 ~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
++-++|+|+|-|..+. +.++.+.+.|-++||.|+=
T Consensus 14 ~~~K~IAvVG~S~~P~-----r~sy~V~kyL~~~GY~ViP 48 (140)
T COG1832 14 KSAKTIAVVGASDKPD-----RPSYRVAKYLQQKGYRVIP 48 (140)
T ss_pred HhCceEEEEecCCCCC-----ccHHHHHHHHHHCCCEEEe
Confidence 3568999999886542 4566788999999999874
No 75
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=64.29 E-value=28 Score=25.82 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHH----CCC-eEEEcCCC---CChhHHHHHHHHhcCCe
Q 045940 22 SDAALDLATQLVE----RKI-NLVYGGGS---VGLMGLVSQTIFDGGCH 62 (189)
Q Consensus 22 ~~~A~~lg~~la~----~g~-~lv~GGg~---~GlM~a~a~ga~~~gg~ 62 (189)
.+.|+.+|+.||+ .|+ .++++=++ -|-+.|+++|+.++|-.
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~ 118 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLE 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCC
Confidence 5777888888877 576 46664222 59999999999998743
No 76
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=64.25 E-value=13 Score=32.16 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=29.8
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKIN 38 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~ 38 (189)
|+|+++|.|+.++- ..-+...|++|.+.|.++|+.
T Consensus 1 ~~~~~rili~t~~~---G~GH~~~a~al~~~l~~~g~~ 35 (380)
T PRK13609 1 MIKNPKVLILTAHY---GNGHVQVAKTLEQTFRQKGIK 35 (380)
T ss_pred CCCCCeEEEEEcCC---CchHHHHHHHHHHHHHhcCCC
Confidence 78999999998764 456778999999999999885
No 77
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=63.84 E-value=51 Score=28.70 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=41.5
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCC-eEEEEecCccccccccCC-CCceEEecC---CHHHHHHHHHH--hcCeeEEec
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGC-HVLGVIPKALVPIEISGQ-TVGDVLIVS---DMHERKAEMAR--RADAFIALP 108 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg-~viGv~p~~~~~~e~~~~-~~~~~~~~~---~~~~R~~~m~~--~sda~I~lp 108 (189)
+..+|.|.|+.|+|- ...|...|. ++|.+ .......+.... .-.+.+... +-..+...+.. -+|.+|-..
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 358999999999998 444555564 44444 211112222222 112222221 12222222221 278888888
Q ss_pred CCcchHHHHHHHH
Q 045940 109 GGYGTMEELLEMI 121 (189)
Q Consensus 109 GG~GTL~El~~~~ 121 (189)
|-.-|+++...+.
T Consensus 247 G~~~~~~~ai~~~ 259 (350)
T COG1063 247 GSPPALDQALEAL 259 (350)
T ss_pred CCHHHHHHHHHHh
Confidence 8555555555443
No 78
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=63.80 E-value=26 Score=27.90 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHHhcCeeEEecCCcchHHHHHHHHHHHh-----cC-CCCCcEEEEeC--CCCchH--HHHHHHHHHHcCC--CCccccC
Q 045940 97 MARRADAFIALPGGYGTMEELLEMITWSQ-----LG-IHDKPVGVLNV--DGYYDS--LLRFFDKGVEEGF--IKSSARN 164 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~~~~~~-----~~-~~~kPiill~~--~g~~~~--l~~~l~~~~~~g~--i~~~~~~ 164 (189)
+...+|++|+.|-..+|+.-+..=++-.- +. ..++|+++.-. ...|.. ..+-++.+.+.|+ +++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 34578999999999999987753222110 11 24799998743 136653 2334566666664 3333111
Q ss_pred ------cEEEeCCHHHHHHHhhcCCCCC
Q 045940 165 ------IVISAKNARDLLQGMEVPNLLP 186 (189)
Q Consensus 165 ------~i~~~~~~ee~~~~l~~~~~~~ 186 (189)
-..--.++|++++++.++...+
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~~~ 181 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLKEK 181 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhccc
Confidence 1345679999999998876554
No 79
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=63.73 E-value=29 Score=27.93 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCeeEEecC--CcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEe
Q 045940 92 ERKAEMARRADAFIALPG--GYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISA 169 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpG--G~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 169 (189)
+....+...||++|.-.. |+|+- ++|++. .++|++..+..+....+.. . .....+.-.
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~--~~Ea~a------~G~Pvi~~~~~~~~~~~~~-------~-----~~~g~~~~~ 303 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMV--LLEAMA------FGLPVISFDCPTGPSEIIE-------D-----GVNGLLVPN 303 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHH--HHHHHH------cCCCEEEecCCCchHhhhc-------c-----CcceEEeCC
Confidence 334456678998775432 33433 677774 7999998765433322211 1 111222333
Q ss_pred CCHHHHHHHhhcCCCCC
Q 045940 170 KNARDLLQGMEVPNLLP 186 (189)
Q Consensus 170 ~~~ee~~~~l~~~~~~~ 186 (189)
+|++++.+.|.+....|
T Consensus 304 ~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 304 GDVEALAEALLRLMEDE 320 (348)
T ss_pred CCHHHHHHHHHHHHcCH
Confidence 46788888887764433
No 80
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=63.26 E-value=16 Score=32.85 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=53.4
Q ss_pred CeEEEcCCCCChhHHHHHHHHh--------------------cCCeEEEEecCccccccccCCCCceEEecCCHHHHHHH
Q 045940 37 INLVYGGGSVGLMGLVSQTIFD--------------------GGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAE 96 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~--------------------~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~ 96 (189)
+.|-+|-|+ |+.+--.+-+.+ .+|+|+||--+.+.|.....-..+.-.+..+|
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdF------ 213 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDF------ 213 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecce------
Confidence 678899999 999988887776 36788888554444432211111111222333
Q ss_pred HHHhcCeeEEecCCcchHHHHHHH-HHHHhcCC
Q 045940 97 MARRADAFIALPGGYGTMEELLEM-ITWSQLGI 128 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~-~~~~~~~~ 128 (189)
.-++.++|+-.||+|--.|+.-- |--..+|.
T Consensus 214 -ef~A~aviv~SGGIGGnhelVRrnWP~eRlG~ 245 (552)
T COG3573 214 -EFSASAVIVASGGIGGNHELVRRNWPTERLGR 245 (552)
T ss_pred -EEeeeeEEEecCCcCCCHHHHHhcCchhhcCC
Confidence 22678999999999999998654 44345554
No 81
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=63.12 E-value=98 Score=26.58 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=69.8
Q ss_pred HCCCeEEEcCCC--CChhHHHHHHHHhcC-CeEEEEecCccccccccCCCCceEEec--CCHH-HHHHHHHHhcCeeEEe
Q 045940 34 ERKINLVYGGGS--VGLMGLVSQTIFDGG-CHVLGVIPKALVPIEISGQTVGDVLIV--SDMH-ERKAEMARRADAFIAL 107 (189)
Q Consensus 34 ~~g~~lv~GGg~--~GlM~a~a~ga~~~g-g~viGv~p~~~~~~e~~~~~~~~~~~~--~~~~-~R~~~m~~~sda~I~l 107 (189)
++|..+|-||.. .|-..-++.+|+..| |.|.=.+|...... -.....++++. .+.. ..+..+.+..|++++=
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~--~~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviG 108 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASA--LKSYLPELMVIEVEGKKLLEERELVERADAVVIG 108 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhh--HhhcCcceeEeecccchhhHHhhhhccCCEEEEC
Confidence 468888888863 477777888888887 45554455432111 11112233332 2222 2223566778887665
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHhh
Q 045940 108 PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGME 180 (189)
Q Consensus 108 pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~ 180 (189)
| |.|.-+|..++....-.... +|+++ +-|+.+ .+ .+..... ....++++..+-|....+.
T Consensus 109 p-GlG~~~~~~~~~~~~l~~~~-~p~Vi-DADaL~-----~l---a~~~~~~--~~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 109 P-GLGRDAEGQEALKELLSSDL-KPLVL-DADALN-----LL---AELPDLL--DERKVVLTPHPGEFARLLG 168 (284)
T ss_pred C-CCCCCHHHHHHHHHHHhccC-CCEEE-eCcHHH-----HH---HhCcccc--cCCcEEECCCHHHHHHhcC
Confidence 4 58887776666432221112 88854 455432 11 1111111 1122778888888777654
No 82
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=62.39 E-value=38 Score=28.65 Aligned_cols=44 Identities=23% Similarity=0.552 Sum_probs=27.3
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHH-----HHHHHHHcC
Q 045940 108 PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLR-----FFDKGVEEG 156 (189)
Q Consensus 108 pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~-----~l~~~~~~g 156 (189)
-.|. |++.+++.+.-.. ..+..|++++. ||+++.. |++.+.+.|
T Consensus 71 ~~g~-~~~~~~~~~~~~r-~~~~~p~vlm~---Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 71 KQGI-NLNKILSILSEVN-GEIKAPIVIFT---YYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred HcCC-CHHHHHHHHHHHh-cCCCCCEEEEe---cccHHHHhCHHHHHHHHHHcC
Confidence 3443 4666666654433 24678998874 8887665 666666655
No 83
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.32 E-value=33 Score=27.42 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=33.5
Q ss_pred EEEcCCCCChhHH-HHHHHHhcCCeEEEEecCccccccccCCCCceEEecC---CHHHHHHHHHHhcCeeEEe
Q 045940 39 LVYGGGSVGLMGL-VSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVS---DMHERKAEMARRADAFIAL 107 (189)
Q Consensus 39 lv~GGg~~GlM~a-~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~---~~~~R~~~m~~~sda~I~l 107 (189)
.++=-. +|-|+. .++.|...|..|+=|.-... .+.++..+.+.+. +|.+.-......+|++|..
T Consensus 22 ~ItN~S-SG~~G~~lA~~~~~~Ga~V~li~g~~~----~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 22 FITNRS-SGKMGAALAEEAARRGAEVTLIHGPSS----LPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp EEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred EecCCC-cCHHHHHHHHHHHHCCCEEEEEecCcc----ccccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 343333 499985 56777788999988854321 1122333555544 4555555555667777653
No 84
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=62.06 E-value=20 Score=29.09 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=39.9
Q ss_pred HHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHH
Q 045940 95 AEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARD 174 (189)
Q Consensus 95 ~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee 174 (189)
..+...||++|.-...-|.-.=+.|++. .++|++.-+..+ +.. ++++ .....+.-.+|+++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~-~~~---~i~~---------~~~g~~~~~~~~~~ 318 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPG-CRE---AVID---------GVNGFLVPPGDAEA 318 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCC-chh---hhhc---------CcceEEECCCCHHH
Confidence 3456789987754432222222667764 799999876553 222 2211 11223334457888
Q ss_pred HHHHhhcCCC
Q 045940 175 LLQGMEVPNL 184 (189)
Q Consensus 175 ~~~~l~~~~~ 184 (189)
+.+.|.+...
T Consensus 319 ~~~~i~~l~~ 328 (359)
T cd03808 319 LADAIERLIE 328 (359)
T ss_pred HHHHHHHHHh
Confidence 8888876443
No 85
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=61.95 E-value=18 Score=29.30 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=49.5
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcC-------CCCCcEEEEeCCCCch--HHHHHHHHHHHcC-CCCccccCcEEEeC
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLG-------IHDKPVGVLNVDGYYD--SLLRFFDKGVEEG-FIKSSARNIVISAK 170 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~-------~~~kPiill~~~g~~~--~l~~~l~~~~~~g-~i~~~~~~~i~~~~ 170 (189)
.|+.|++|-...||..+..=++-+-+. ..++|++|+-.+-=+. +|.+++ ++.+.| .|-|.....++-=.
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMl-kl~~~GaiI~Pp~PaFY~~P~ 159 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENML-KLAEMGAIIMPPMPAFYHKPQ 159 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHH-HHHHCCCEecCCChhhhcCCC
Confidence 479999999999999987655533332 2578999885542232 233322 233444 34444455566667
Q ss_pred CHHHHHHHhh
Q 045940 171 NARDLLQGME 180 (189)
Q Consensus 171 ~~ee~~~~l~ 180 (189)
+.||+++++.
T Consensus 160 sieDlvd~~v 169 (191)
T COG0163 160 SIEDLVDFVV 169 (191)
T ss_pred CHHHHHHHHH
Confidence 8888888763
No 86
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=61.74 E-value=52 Score=29.08 Aligned_cols=140 Identities=24% Similarity=0.257 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcchHH
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTME 115 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~ 115 (189)
.+.+|+|.|..|.| +.+=|+..|.+|+++.-.... .+.....-.+.++...-.+....+.+.+|++|..-+ .=|++
T Consensus 168 ~~V~I~G~GGlGh~--avQ~Aka~ga~Via~~~~~~K-~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~ 243 (339)
T COG1064 168 KWVAVVGAGGLGHM--AVQYAKAMGAEVIAITRSEEK-LELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLE 243 (339)
T ss_pred CEEEEECCcHHHHH--HHHHHHHcCCeEEEEeCChHH-HHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHH
Confidence 46789998855655 556677788999999532211 111111112233321122222333334999999999 77887
Q ss_pred HHHHHHHH----HhcCCCC-CcEE-------EEeC-------CCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHH
Q 045940 116 ELLEMITW----SQLGIHD-KPVG-------VLNV-------DGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLL 176 (189)
Q Consensus 116 El~~~~~~----~~~~~~~-kPii-------ll~~-------~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~ 176 (189)
....++.. .+.|... .|.. +++. .|=..++.++| ++..+|-|.+... ..+-.++..|++
T Consensus 244 ~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l-~f~~~g~Ikp~i~-e~~~l~~in~A~ 321 (339)
T COG1064 244 PSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEAL-DFAAEGKIKPEIL-ETIPLDEINEAY 321 (339)
T ss_pred HHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHH-HHHHhCCceeeEE-eeECHHHHHHHH
Confidence 77666542 1223331 1211 1111 12233455545 3566777776654 344556788888
Q ss_pred HHhhc
Q 045940 177 QGMEV 181 (189)
Q Consensus 177 ~~l~~ 181 (189)
+.|++
T Consensus 322 ~~m~~ 326 (339)
T COG1064 322 ERMEK 326 (339)
T ss_pred HHHHc
Confidence 88875
No 87
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=61.69 E-value=12 Score=27.53 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|+|+|++|......+.=...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 577777666666677779999999999999999887
No 88
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=61.41 E-value=26 Score=26.54 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHH----CCCe-EEEcCCC---CChhHHHHHHHHhcCC
Q 045940 21 FSDAALDLATQLVE----RKIN-LVYGGGS---VGLMGLVSQTIFDGGC 61 (189)
Q Consensus 21 ~~~~A~~lg~~la~----~g~~-lv~GGg~---~GlM~a~a~ga~~~gg 61 (189)
..+.|+.+|.++|+ .|+. +|.|=+. -|--.|+++||.|+|=
T Consensus 75 N~~aA~~vG~lia~ra~~kgi~~vVfdr~g~~yhgRV~Ala~~AreaGL 123 (125)
T COG0256 75 NTEAAYLVGKLIAERALAKGIEEVVFDRGGYKYHGRVAALADGAREAGL 123 (125)
T ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCcchHHHHHHHHHHHcCc
Confidence 35677788888776 5776 6665432 5889999999999874
No 89
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=61.26 E-value=52 Score=26.93 Aligned_cols=101 Identities=27% Similarity=0.355 Sum_probs=48.3
Q ss_pred HCCCeEEEcCCCCChhHH---HHHHHHhcC-CeEEEEecCccccccccCCCCceEEecCCH---HHHHHHHHHhcCeeEE
Q 045940 34 ERKINLVYGGGSVGLMGL---VSQTIFDGG-CHVLGVIPKALVPIEISGQTVGDVLIVSDM---HERKAEMARRADAFIA 106 (189)
Q Consensus 34 ~~g~~lv~GGg~~GlM~a---~a~ga~~~g-g~viGv~p~~~~~~e~~~~~~~~~~~~~~~---~~R~~~m~~~sda~I~ 106 (189)
++|..++-||.. .-.+| +..+|+..| |.++-+.|....+ . ......+++....- .+.-.......|++++
T Consensus 7 ~~g~vl~i~Gs~-~~~GA~~la~~~a~~~G~g~vt~~~~~~~~~-~-~~~~~pe~i~~~~~~~~~~~~~~~~~~~d~v~i 83 (254)
T cd01171 7 SRGRVLVIGGSR-GYTGAAYLAALAALRAGAGLVTVATPPEAAA-V-IKSYSPELMVHPLLETDIEELLELLERADAVVI 83 (254)
T ss_pred CCCeEEEEeCCC-CCccHHHHHHHHHHHHccCEEEEEECHhhHH-H-HHhcCceeeEecccccchHHHHhhhccCCEEEE
Confidence 367888888854 33333 334555555 4666666654222 1 11111233322110 0111233456777665
Q ss_pred ecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Q 045940 107 LPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGY 141 (189)
Q Consensus 107 lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~ 141 (189)
.+|.|+-+.+..+..... .++.|+ ++|.++.
T Consensus 84 -g~gl~~~~~~~~i~~~~~--~~~~pv-VlDa~~~ 114 (254)
T cd01171 84 -GPGLGRDEEAAEILEKAL--AKDKPL-VLDADAL 114 (254)
T ss_pred -ecCCCCCHHHHHHHHHHH--hcCCCE-EEEcHHH
Confidence 555887544433333222 347786 5677653
No 90
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=61.19 E-value=81 Score=24.98 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=63.7
Q ss_pred CCeEEEEEcCCCCCCChHH--HHHHHHHHHHHHHCCCe---EEEcCCCCChhHHHHHHHHhcCCeEEEEecCcccccccc
Q 045940 3 KFKRVCVFCGSNSGNRKIF--SDAALDLATQLVERKIN---LVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEIS 77 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~--~~~A~~lg~~la~~g~~---lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~ 77 (189)
.++.+-|-+|+.. -+.. .-.+.++-+.|-++|++ |=.|=|..+.-.....+. ..+|.+|-.. .
T Consensus 2 ~~~~vFVTVGtT~--Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~-k~~gl~id~y---~------ 69 (170)
T KOG3349|consen 2 HLMTVFVTVGTTS--FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIR-KNGGLTIDGY---D------ 69 (170)
T ss_pred cceEEEEEecccc--HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhc-ccCCeEEEEE---e------
Confidence 3566667677643 2333 33456778888898887 445655323333333322 4444333220 1
Q ss_pred CCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCc-hHHHHHHHHHHHcC
Q 045940 78 GQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYY-DSLLRFFDKGVEEG 156 (189)
Q Consensus 78 ~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~-~~l~~~l~~~~~~g 156 (189)
..+.+.+ . ++.||.+ +=-+|.||- ++++ ..+||.+++-.+..- ++=.++.+++.++|
T Consensus 70 --------f~psl~e---~-I~~AdlV-IsHAGaGS~---letL------~l~KPlivVvNd~LMDNHQ~ELA~qL~~eg 127 (170)
T KOG3349|consen 70 --------FSPSLTE---D-IRSADLV-ISHAGAGSC---LETL------RLGKPLIVVVNDSLMDNHQLELAKQLAEEG 127 (170)
T ss_pred --------cCccHHH---H-HhhccEE-EecCCcchH---HHHH------HcCCCEEEEeChHhhhhHHHHHHHHHHhcC
Confidence 1112221 2 2345544 446889996 4445 468999866333233 33444456777777
Q ss_pred CC
Q 045940 157 FI 158 (189)
Q Consensus 157 ~i 158 (189)
++
T Consensus 128 yL 129 (170)
T KOG3349|consen 128 YL 129 (170)
T ss_pred cE
Confidence 63
No 91
>PRK06756 flavodoxin; Provisional
Probab=61.07 E-value=15 Score=27.62 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=18.9
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKIN 38 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~ 38 (189)
|++|.|+.+|..++.. +.|+.+++.|.+.|+.
T Consensus 1 mmkv~IiY~S~tGnTe---~vA~~ia~~l~~~g~~ 32 (148)
T PRK06756 1 MSKLVMIFASMSGNTE---EMADHIAGVIRETENE 32 (148)
T ss_pred CceEEEEEECCCchHH---HHHHHHHHHHhhcCCe
Confidence 3567777666666444 4555666666555544
No 92
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=61.02 E-value=96 Score=25.79 Aligned_cols=125 Identities=24% Similarity=0.323 Sum_probs=61.3
Q ss_pred EEEcCCCCChhHHH---HHHHHhcC-CeEEEEecCccccccccCCCCceEEecC-CH--HHHHHHHHHhcCeeEEecCCc
Q 045940 39 LVYGGGSVGLMGLV---SQTIFDGG-CHVLGVIPKALVPIEISGQTVGDVLIVS-DM--HERKAEMARRADAFIALPGGY 111 (189)
Q Consensus 39 lv~GGg~~GlM~a~---a~ga~~~g-g~viGv~p~~~~~~e~~~~~~~~~~~~~-~~--~~R~~~m~~~sda~I~lpGG~ 111 (189)
+|-||.. +..+|+ +++|+..| |.|.-+.|....+.-.. ..-|+++.+ .. ...-....+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~~~--~~Pe~m~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPVIAS--YSPEAMVSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHHHH--HTTTSEEEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHHHh--CCceeEEecccchhhhhhHhhhccCCEEEeecC-C
Confidence 5567755 666664 56666666 67777776543221000 111222211 11 1122234567899888887 4
Q ss_pred chHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHhhc
Q 045940 112 GTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEV 181 (189)
Q Consensus 112 GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 181 (189)
|+-++..+.+... -...+| +++|-+++| ++. +.. ......++++..+-|+-+.+..
T Consensus 78 g~~~~~~~~~~~~--~~~~~p-~VlDADaL~-----~l~---~~~---~~~~~~~IlTPH~gE~~rL~~~ 133 (242)
T PF01256_consen 78 GRDEETEELLEEL--LESDKP-LVLDADALN-----LLA---ENP---KKRNAPVILTPHPGEFARLLGK 133 (242)
T ss_dssp SSSHHHHHHHHHH--HHHCST-EEEECHHHH-----CHH---HCC---CCSSSCEEEE-BHHHHHHHHTT
T ss_pred CCchhhHHHHHHH--Hhhcce-EEEehHHHH-----HHH---hcc---ccCCCCEEECCCHHHHHHHhCC
Confidence 5555533332111 124678 566765422 121 111 3445678899999998887654
No 93
>PLN02565 cysteine synthase
Probab=60.30 E-value=1.1e+02 Score=26.38 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=22.9
Q ss_pred EEEcCCCCChhHHHHHHHHhcC--CeEEEEecC
Q 045940 39 LVYGGGSVGLMGLVSQTIFDGG--CHVLGVIPK 69 (189)
Q Consensus 39 lv~GGg~~GlM~a~a~ga~~~g--g~viGv~p~ 69 (189)
+|.+.|..|++..++++.++.+ -+++||-|.
T Consensus 176 vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~ 208 (322)
T PLN02565 176 FVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPV 208 (322)
T ss_pred EEEcCCchHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 4444444499999999988764 589999774
No 94
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=60.09 E-value=24 Score=29.84 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCeeEEec-CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEe
Q 045940 91 HERKAEMARRADAFIALP-GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISA 169 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lp-GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 169 (189)
.+....+...||++|... -|+|.. +.|+++ .++||+..+..| +..+ + .......+.-.
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama------~G~Pvi~~~~~~-~~e~---i---------~~~~~G~~~~~ 310 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIV--PVEAMA------SGTPVIAYGKGG-ALET---V---------IDGVTGILFEE 310 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCch--HHHHHH------cCCCEEEeCCCC-Ccce---e---------eCCCCEEEeCC
Confidence 344556778999888533 566765 467774 799999887654 2221 1 11122333335
Q ss_pred CCHHHHHHHhhcCCCCC
Q 045940 170 KNARDLLQGMEVPNLLP 186 (189)
Q Consensus 170 ~~~ee~~~~l~~~~~~~ 186 (189)
+|++++.+.|.+....|
T Consensus 311 ~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 311 QTVESLAAAVERFEKNE 327 (351)
T ss_pred CCHHHHHHHHHHHHhCc
Confidence 78998888887665444
No 95
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=60.02 E-value=26 Score=30.47 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=34.0
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC-----CCCchHHHHHHH
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV-----DGYYDSLLRFFD 150 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~-----~g~~~~l~~~l~ 150 (189)
..|+|||.-| .-||+|...++.++-. .+||||+-+. .-..|...++.+
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l~--~~kPVVlTGA~rp~~~~~sDg~~NL~~ 130 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTLE--NDKPVVLTGSMRPSTELSADGPLNLYN 130 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHhc--CCCCEEEECCCCCCCCcCcchHHHHHH
Confidence 4789999876 8999999988876442 3899999865 123445555444
No 96
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.65 E-value=58 Score=28.09 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=19.0
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
.++.-||. |.+-.+++.....+-.++||
T Consensus 60 ~vi~~GGD-GT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 60 LAIVLGGD-GTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred EEEEECCc-HHHHHHHHHhccCCCCEEEE
Confidence 35555667 99988888876655555555
No 97
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=59.42 E-value=15 Score=28.02 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|++|+||-+|..++.. ..|+.+.+.|...++.+.
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~~ 34 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEVD 34 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceEE
Confidence 6789999999888665 566678888877776663
No 98
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.25 E-value=59 Score=28.17 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=40.0
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE---------------------------------------EcCC
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV---------------------------------------YGGG 44 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv---------------------------------------~GGg 44 (189)
|++|+|+.-.. .+...+.+.++.++|.++|+.++ +=||
T Consensus 1 m~~igiv~n~~---~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGG 77 (305)
T PRK02649 1 MPKAGIIYNDG---KPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGG 77 (305)
T ss_pred CCEEEEEEcCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeC
Confidence 56799996543 35667788888888876665432 2245
Q ss_pred CCChhHHHHHHHHhcCCeEEEE
Q 045940 45 SVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 45 ~~GlM~a~a~ga~~~gg~viGv 66 (189)
. |.|=-+++-+...+-.++||
T Consensus 78 D-GTlL~aar~~~~~~iPilGI 98 (305)
T PRK02649 78 D-GTVLSAARQLAPCGIPLLTI 98 (305)
T ss_pred c-HHHHHHHHHhcCCCCcEEEE
Confidence 6 77776666666667788888
No 99
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=59.15 E-value=67 Score=25.97 Aligned_cols=70 Identities=23% Similarity=0.398 Sum_probs=42.5
Q ss_pred CCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEe--cCCHHHHHHHHHH---------hcCe
Q 045940 35 RKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLI--VSDMHERKAEMAR---------RADA 103 (189)
Q Consensus 35 ~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~--~~~~~~R~~~m~~---------~sda 103 (189)
.|-.||||| . |..+.++-.++++++..++-+- +...|+... .+++ .+++-+..+..++ .-|+
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~siD--l~eNe~Ad~---sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSID--LSENEQADS---SILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEEe--ecccccccc---eEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 567899997 5 8889888889998887666531 222222211 1222 2345444444333 3599
Q ss_pred eEEecCCc
Q 045940 104 FIALPGGY 111 (189)
Q Consensus 104 ~I~lpGG~ 111 (189)
++.+.||+
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 99888875
No 100
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=58.96 E-value=41 Score=28.83 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCeeEEecC--CcchHHHHHHHHHHHhcCCCCCcEEEEe-CCCCchHHHHHHHHHHHcCCCCccccCcEEE
Q 045940 92 ERKAEMARRADAFIALPG--GYGTMEELLEMITWSQLGIHDKPVGVLN-VDGYYDSLLRFFDKGVEEGFIKSSARNIVIS 168 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpG--G~GTL~El~~~~~~~~~~~~~kPiill~-~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 168 (189)
+........+|++|.-.- |+|.. +.|+++ .++||+..+ ..| ..++ ++ . .....+.-
T Consensus 249 ~~~~~~~~~~d~~v~~s~~Egf~~~--~lEAma------~G~Pvv~s~~~~g-~~ei---v~----~-----~~~G~lv~ 307 (359)
T PRK09922 249 EVVQQKIKNVSALLLTSKFEGFPMT--LLEAMS------YGIPCISSDCMSG-PRDI---IK----P-----GLNGELYT 307 (359)
T ss_pred HHHHHHHhcCcEEEECCcccCcChH--HHHHHH------cCCCEEEeCCCCC-hHHH---cc----C-----CCceEEEC
Confidence 433445567898885443 34432 566764 799999988 443 3222 21 1 12223444
Q ss_pred eCCHHHHHHHhhcCCCCCC
Q 045940 169 AKNARDLLQGMEVPNLLPS 187 (189)
Q Consensus 169 ~~~~ee~~~~l~~~~~~~~ 187 (189)
.+|++++.+.|.+....|.
T Consensus 308 ~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 308 PGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred CCCHHHHHHHHHHHHhCcc
Confidence 5799999999988765553
No 101
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=58.81 E-value=35 Score=29.08 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCe--EEEEec
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCH--VLGVIP 68 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~--viGv~p 68 (189)
+....|-++-. |+ ..++++++.|-.+|..+|+.-.. +.-..+.+.|.+.|.. +||+--
T Consensus 162 ~v~~~~~gs~~--D~---~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d~ 221 (306)
T PF02608_consen 162 KVNVSYTGSFN--DP---AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVDS 221 (306)
T ss_dssp EEEEEE-SSSS---H---HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEES
T ss_pred eEEEEEcCCcC--ch---HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEecc
Confidence 34445555432 44 67788889998899999999544 5667788888899988 999843
No 102
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=58.65 E-value=25 Score=29.96 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
|+||+.|+|++-...+ . ...+..|+..||+.|+.++-
T Consensus 1 ~~~~~~iai~~KGGvG--K--Tt~~~nLa~~la~~g~kVLl 37 (295)
T PRK13234 1 MSKLRQIAFYGKGGIG--K--STTSQNTLAALVEMGQKILI 37 (295)
T ss_pred CCcceEEEEECCCCcc--H--HHHHHHHHHHHHHCCCeEEE
Confidence 8999999998433333 2 24566778888888877543
No 103
>PRK12361 hypothetical protein; Provisional
Probab=58.64 E-value=21 Score=33.12 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCCChhHHHHHHHHhcCCeEEEEecC
Q 045940 25 ALDLATQLVERKI-NLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPK 69 (189)
Q Consensus 25 A~~lg~~la~~g~-~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~ 69 (189)
|.++.+..++.++ .||..||. |.-..+..+.... +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecC
Confidence 4556666655555 56667778 9999999988764 467999994
No 104
>PRK13057 putative lipid kinase; Reviewed
Probab=58.00 E-value=23 Score=29.79 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=23.3
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEe
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLN 137 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~ 137 (189)
.| .|+.-||=||++|+...+. ..+.|+.++-
T Consensus 51 ~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 51 VD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred CC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 45 5678899999999987763 2457888874
No 105
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=57.85 E-value=22 Score=30.30 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=41.0
Q ss_pred HHHHhcCeeEEe--cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHH
Q 045940 96 EMARRADAFIAL--PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNAR 173 (189)
Q Consensus 96 ~m~~~sda~I~l--pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~e 173 (189)
.+...||++|.. ..|+|.. ++|++. .++||+.-+..| ..++ ++ ++ ....+.-.+|++
T Consensus 268 ~~~~~adi~v~pS~~Eg~~~~--~lEAma------~G~Pvv~s~~~g-~~e~---i~----~~-----~~g~~~~~~d~~ 326 (374)
T TIGR03088 268 ALMQALDLFVLPSLAEGISNT--ILEAMA------SGLPVIATAVGG-NPEL---VQ----HG-----VTGALVPPGDAV 326 (374)
T ss_pred HHHHhcCEEEeccccccCchH--HHHHHH------cCCCEEEcCCCC-cHHH---hc----CC-----CceEEeCCCCHH
Confidence 456789988743 2455554 677774 799999987654 2222 21 11 122333347888
Q ss_pred HHHHHhhcCCC
Q 045940 174 DLLQGMEVPNL 184 (189)
Q Consensus 174 e~~~~l~~~~~ 184 (189)
++.+.|.+...
T Consensus 327 ~la~~i~~l~~ 337 (374)
T TIGR03088 327 ALARALQPYVS 337 (374)
T ss_pred HHHHHHHHHHh
Confidence 88888876543
No 106
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=57.83 E-value=45 Score=27.68 Aligned_cols=33 Identities=27% Similarity=0.617 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHH
Q 045940 113 TMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRF 148 (189)
Q Consensus 113 TL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~ 148 (189)
||+.++++.....-.-...||+|+ |||+|++..
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 788888777544433356899998 499998874
No 107
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=57.28 E-value=25 Score=32.43 Aligned_cols=45 Identities=18% Similarity=0.314 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCCChhHHHHHHHHhcC------CeEEEEecC
Q 045940 24 AALDLATQLVERKI-NLVYGGGSVGLMGLVSQTIFDGG------CHVLGVIPK 69 (189)
Q Consensus 24 ~A~~lg~~la~~g~-~lv~GGg~~GlM~a~a~ga~~~g------g~viGv~p~ 69 (189)
.|+++.+.+...++ .||.-||. |..-.+..|-.... ...+||+|.
T Consensus 156 hA~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 156 HAKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecC
Confidence 35566666655565 47777778 99999999987642 356999994
No 108
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=57.21 E-value=30 Score=31.41 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=36.4
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC-----CCchHHHHHHHH
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD-----GYYDSLLRFFDK 151 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~-----g~~~~l~~~l~~ 151 (189)
.|+|||.-| .-||+|-..++.++- ..+|||||.+.- -..|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 799999986 899999998887765 468999999762 234566666553
No 109
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=57.17 E-value=24 Score=28.09 Aligned_cols=79 Identities=9% Similarity=0.032 Sum_probs=48.9
Q ss_pred hcCeeEEecCCcchHHHHHHHHHH----H---hcCCCCCcEEEEeCCCCchHH--HHHHHHHHHcCC--CCccccCcEEE
Q 045940 100 RADAFIALPGGYGTMEELLEMITW----S---QLGIHDKPVGVLNVDGYYDSL--LRFFDKGVEEGF--IKSSARNIVIS 168 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~----~---~~~~~~kPiill~~~g~~~~l--~~~l~~~~~~g~--i~~~~~~~i~~ 168 (189)
.+|++|+.|-..+|+.-+..=++- . ..-..++|+++.=.+ .|..- ++-++.+.+.|+ +++ ....+.-
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~-m~~~~~~~~Nl~~L~~~G~~ii~P-~~g~~~~ 152 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRE-TPLNSIHLENMLRLSRMGAIILPP-MPAFYTR 152 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCC-CcCCHHHHHHHHHHHHCCCEEECC-CCcccCC
Confidence 589999999999999887642210 0 011257999988654 55432 223445666664 333 2344555
Q ss_pred eCCHHHHHHHhh
Q 045940 169 AKNARDLLQGME 180 (189)
Q Consensus 169 ~~~~ee~~~~l~ 180 (189)
-.+++|+++++.
T Consensus 153 p~~~~~~~~~i~ 164 (181)
T TIGR00421 153 PKSVEDMIDFIV 164 (181)
T ss_pred CCCHHHHHHHHH
Confidence 688999777664
No 110
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=57.08 E-value=1.3e+02 Score=26.00 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=39.9
Q ss_pred CeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCcccccccc-CCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcchHH
Q 045940 37 INLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEIS-GQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTME 115 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~-~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~ 115 (189)
..+|.|.|+.|++ +..-|+..|.+++.+........+.. .-..+.++...+- ++-..+....|.+|=..|+..|++
T Consensus 186 ~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~~ 262 (360)
T PLN02586 186 HLGVAGLGGLGHV--AVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHALG 262 (360)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHHH
Confidence 4567776655555 55567777888877643321111110 0111222222221 111111123577777777666777
Q ss_pred HHHHHH
Q 045940 116 ELLEMI 121 (189)
Q Consensus 116 El~~~~ 121 (189)
+.+..+
T Consensus 263 ~~~~~l 268 (360)
T PLN02586 263 PLLGLL 268 (360)
T ss_pred HHHHHh
Confidence 665544
No 111
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=56.68 E-value=33 Score=28.07 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCeeEEe---cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEE
Q 045940 92 ERKAEMARRADAFIAL---PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVIS 168 (189)
Q Consensus 92 ~R~~~m~~~sda~I~l---pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 168 (189)
+...-+...||++|.- ..|+|.- ++|++. .++|++..+..+ +. +++++ .....+.-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~--~~Ea~a------~G~Pvi~~~~~~-~~---e~i~~---------~~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLV--IREALA------AGVPVIASDIGG-MA---ELVRD---------GVNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChH--HHHHHH------CCCCEEECCCCC-HH---HHhcC---------CCcEEEEC
Confidence 4445567889988754 2445543 566663 789999877553 22 22211 11223344
Q ss_pred eCCHHHHHHHhhcCCC
Q 045940 169 AKNARDLLQGMEVPNL 184 (189)
Q Consensus 169 ~~~~ee~~~~l~~~~~ 184 (189)
.+|++++.+.+.+...
T Consensus 313 ~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 313 PGDAEDLAAALERLID 328 (359)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4568888888876554
No 112
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=56.64 E-value=39 Score=28.10 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCeeEEec--CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEe
Q 045940 92 ERKAEMARRADAFIALP--GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISA 169 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lp--GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 169 (189)
+....+...||++|.-. .|+|.- +.|++. .++|++..+..++- .+ +++ .....+.-.
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~~--~~Eam~------~g~PvI~~~~~~~~-e~---~~~---------~~~g~~~~~ 314 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPNT--AIEALA------CGTPVVAFDVGGIP-DI---VDH---------GVTGYLAKP 314 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccHH--HHHHHh------cCCCEEEecCCCCh-hh---eeC---------CCceEEeCC
Confidence 34455678999987743 344443 567774 79999988765432 11 111 111223334
Q ss_pred CCHHHHHHHhhcCCCC
Q 045940 170 KNARDLLQGMEVPNLL 185 (189)
Q Consensus 170 ~~~ee~~~~l~~~~~~ 185 (189)
.|++++.+.|.+....
T Consensus 315 ~~~~~~~~~l~~l~~~ 330 (365)
T cd03825 315 GDPEDLAEGIEWLLAD 330 (365)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4778877777665443
No 113
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=56.61 E-value=27 Score=26.79 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCeeEEecCC--cchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcE--
Q 045940 91 HERKAEMARRADAFIALPGG--YGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIV-- 166 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpGG--~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i-- 166 (189)
......++..||++++-+=- -||++++.+.. ...++++++++..=+-| +-+.+.| .+.+
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~------~~~~~vil~GpS~~~~P-----~~l~~~G------v~~v~g 115 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELA------RNAREVILYGPSAPLHP-----EALFDYG------VTYVGG 115 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHT------TTSSEEEEESCCGGS-G-----GGGCCTT-------SEEEE
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhC------ccCCeEEEEecCchhhH-----HHHHhCC------CCEEEE
Confidence 34556778999988876533 59999998765 35799999997632222 1111222 1222
Q ss_pred EEeCCHHHHHHHhhc
Q 045940 167 ISAKNARDLLQGMEV 181 (189)
Q Consensus 167 ~~~~~~ee~~~~l~~ 181 (189)
..+.|+|.+++.+++
T Consensus 116 ~~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 116 SRVVDPEKVLRAISE 130 (147)
T ss_dssp EEES-HHHHHHHHCT
T ss_pred EEEeCHHHHHHHHHc
Confidence 458899999999875
No 114
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=56.38 E-value=24 Score=30.50 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=28.9
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|+|+ +|+|.+|......+.=...|+.+.+.|.+.||.++
T Consensus 1 m~~~-~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 1 MMKM-RVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred CCCc-EEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 5555 56666555555566678999999999999999875
No 115
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=56.31 E-value=35 Score=27.96 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCeeEEecC-----CcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcE
Q 045940 92 ERKAEMARRADAFIALPG-----GYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIV 166 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpG-----G~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 166 (189)
+...-+...||++|.... |.+.-.=+.|++. .++|++..+..+..+- +. + .....+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~------~G~pvi~~~~~~~~~~----~~----~-----~~~g~~ 346 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMA------AGKPVLASVDGESAEL----VE----E-----AGAGLV 346 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHH------CCCcEEEecCCCchhh----hc----c-----CCcceE
Confidence 344456788999886543 2233333567773 7999998876643221 11 1 111223
Q ss_pred EEeCCHHHHHHHhhcCC
Q 045940 167 ISAKNARDLLQGMEVPN 183 (189)
Q Consensus 167 ~~~~~~ee~~~~l~~~~ 183 (189)
.-.+|++++.+.|.+..
T Consensus 347 ~~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 347 VPPGDPEALAAAILELL 363 (394)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 33448888888887654
No 116
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=55.93 E-value=1.3e+02 Score=25.55 Aligned_cols=93 Identities=23% Similarity=0.370 Sum_probs=54.2
Q ss_pred HHHHHHHHHHCCCeEE-EcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCe
Q 045940 25 ALDLATQLVERKINLV-YGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADA 103 (189)
Q Consensus 25 A~~lg~~la~~g~~lv-~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda 103 (189)
.-+-.+.|.+.|+.++ |-.-. + ..++...+.|-..+ .| .-.+. ..+ .. + . + .+.-+.+.+..+.
T Consensus 112 tv~aa~~L~~~Gf~vlpyc~dd--~--~~ar~l~~~G~~~v--mP-lg~pI--Gsg-~G--i-~-~-~~~I~~I~e~~~v 176 (248)
T cd04728 112 TLKAAEILVKEGFTVLPYCTDD--P--VLAKRLEDAGCAAV--MP-LGSPI--GSG-QG--L-L-N-PYNLRIIIERADV 176 (248)
T ss_pred HHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe--CC-CCcCC--CCC-CC--C-C-C-HHHHHHHHHhCCC
Confidence 3345666778899988 76544 2 33444555565555 22 11111 111 10 1 1 1 3333466666889
Q ss_pred eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 104 FIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 104 ~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
-|+..||++|.+++..++. .+-=-+++|+
T Consensus 177 pVI~egGI~tpeda~~Ame------lGAdgVlV~S 205 (248)
T cd04728 177 PVIVDAGIGTPSDAAQAME------LGADAVLLNT 205 (248)
T ss_pred cEEEeCCCCCHHHHHHHHH------cCCCEEEECh
Confidence 9999999999999998885 3344455554
No 117
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=55.91 E-value=56 Score=28.06 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=39.6
Q ss_pred EEecCCH-HHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccc
Q 045940 84 VLIVSDM-HERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSA 162 (189)
Q Consensus 84 ~~~~~~~-~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~ 162 (189)
+.+.+.+ ..+...+...+|++|. +.| +. +.|++. .++|++.....|-+..+. +.|
T Consensus 257 v~~~~~~~~~~~~~~l~~ad~vv~-~Sg--~~--~~EA~a------~g~PvI~~~~~~~~~e~~-------~~g------ 312 (365)
T TIGR00236 257 VHLIEPLEYLDFLNLAANSHLILT-DSG--GV--QEEAPS------LGKPVLVLRDTTERPETV-------EAG------ 312 (365)
T ss_pred EEEECCCChHHHHHHHHhCCEEEE-CCh--hH--HHHHHH------cCCCEEECCCCCCChHHH-------hcC------
Confidence 3344433 3344456677887754 432 22 345553 789999863322232221 111
Q ss_pred cCcEEEeCCHHHHHHHhhcCCC
Q 045940 163 RNIVISAKNARDLLQGMEVPNL 184 (189)
Q Consensus 163 ~~~i~~~~~~ee~~~~l~~~~~ 184 (189)
..+.+..|++++.+.+.+...
T Consensus 313 -~~~lv~~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 313 -TNKLVGTDKENITKAAKRLLT 333 (365)
T ss_pred -ceEEeCCCHHHHHHHHHHHHh
Confidence 122334688888887766543
No 118
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=55.76 E-value=21 Score=30.34 Aligned_cols=152 Identities=21% Similarity=0.246 Sum_probs=77.7
Q ss_pred CCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcC-----CeEEEEecCccccccc
Q 045940 2 GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGG-----CHVLGVIPKALVPIEI 76 (189)
Q Consensus 2 ~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~g-----g~viGv~p~~~~~~e~ 76 (189)
.+++-|++++|.... +...+...++.+.|-++++-|++-|+ +.+.. .+.| |+..|+ |..+ +..
T Consensus 92 G~I~Gv~~ivGC~n~--~~~~~~~~~iakeL~k~d~LVlt~GC--~a~~l-----~k~gl~~~~g~~~gi-P~vl-~~G- 159 (258)
T cd00587 92 GTIPGVALIVGCNND--KKQDKAYADIAKELMKRGVMVLATGC--AAEAL-----LKLGLEDGAGILGGL-PIVF-DMG- 159 (258)
T ss_pred CCCCeEEEEEeCCCC--CccchHHHHHHHHHHhCCEEEEecch--HHHHH-----HhcCCccccccccCC-Ccee-ecc-
Confidence 478889988877643 24456677899999999998888775 23322 2333 554453 3322 111
Q ss_pred cCCCCceEEecCCHHHHHHHHHH---hcC--eeEEecCCcchHHHHHHH--HHHHhcCCCCCcEEEEeC-CCCch-HHHH
Q 045940 77 SGQTVGDVLIVSDMHERKAEMAR---RAD--AFIALPGGYGTMEELLEM--ITWSQLGIHDKPVGVLNV-DGYYD-SLLR 147 (189)
Q Consensus 77 ~~~~~~~~~~~~~~~~R~~~m~~---~sd--a~I~lpGG~GTL~El~~~--~~~~~~~~~~kPiill~~-~g~~~-~l~~ 147 (189)
.+++....-.+..|-..... ..| ++++.|+ -++|=.-+ +.+..+| .|+++=-. --|-+ .+.+
T Consensus 160 ---sCvD~~~ai~~A~~lA~~fg~~~in~LP~~~~a~~---~~sqKAvAi~~g~l~lG---Ipv~~Gp~~P~~~s~~v~~ 230 (258)
T cd00587 160 ---NCVDNSHAANLALKLANMFGGYDRSDLPAVASAPG---AYSQKAAAIATGAVFLG---VPVHVGPPLPVDGSIPVWK 230 (258)
T ss_pred ---cchhHHHHHHHHHHHHHHhCCCCcccCceEEEccc---hhhHHHHHHHHHHHHcC---CceeeCCCCccccChhHHH
Confidence 22222223334444444332 233 5666666 33333332 3444444 46543211 01212 2222
Q ss_pred HHHHHHHcCCCCccccCcEEEeCCHHHHHHHh
Q 045940 148 FFDKGVEEGFIKSSARNIVISAKNARDLLQGM 179 (189)
Q Consensus 148 ~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l 179 (189)
++.+ +. +.-..-.+++..||++..+.+
T Consensus 231 ~L~~----~~-~~~~g~~~~~~~dp~~~a~~i 257 (258)
T cd00587 231 VLTP----EA-SDNEGGYFISVTDYQDIVQKA 257 (258)
T ss_pred HHHh----cc-hhccCcEEEecCCHHHHHHHh
Confidence 3321 11 112335678899999998865
No 119
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=55.60 E-value=79 Score=27.09 Aligned_cols=74 Identities=19% Similarity=0.370 Sum_probs=42.0
Q ss_pred HHHHHHHHCCCeEEE---cCCC-CChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcC
Q 045940 27 DLATQLVERKINLVY---GGGS-VGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRAD 102 (189)
Q Consensus 27 ~lg~~la~~g~~lv~---GGg~-~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sd 102 (189)
++-+.|-.++..+|+ |||. +|.--.+++-+.+.|-.+++|.+..+. .|. ......-...-..|.+.+|
T Consensus 77 ~I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg-------~~~~~nA~~~l~~L~~~~d 148 (304)
T cd02201 77 EIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEG-------KKRMRQAEEGLEELRKHVD 148 (304)
T ss_pred HHHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccc-------hhHHHHHHHHHHHHHHhCC
Confidence 344444446666666 5444 466666788888888888888653211 110 0111111344455667788
Q ss_pred eeEEec
Q 045940 103 AFIALP 108 (189)
Q Consensus 103 a~I~lp 108 (189)
.+|+++
T Consensus 149 ~~ivid 154 (304)
T cd02201 149 TLIVIP 154 (304)
T ss_pred EEEEEe
Confidence 888877
No 120
>PRK13057 putative lipid kinase; Reviewed
Probab=55.27 E-value=27 Score=29.37 Aligned_cols=43 Identities=16% Similarity=0.407 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCCChhHHHHHHHHhcCCeEEEEecC
Q 045940 24 AALDLATQLVERKI-NLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPK 69 (189)
Q Consensus 24 ~A~~lg~~la~~g~-~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~ 69 (189)
.|.++.+.+. .++ .|+..||. |....++.+.... +..+||+|.
T Consensus 39 ~a~~~~~~~~-~~~d~iiv~GGD-GTv~~v~~~l~~~-~~~lgiiP~ 82 (287)
T PRK13057 39 DLSEVIEAYA-DGVDLVIVGGGD-GTLNAAAPALVET-GLPLGILPL 82 (287)
T ss_pred HHHHHHHHHH-cCCCEEEEECch-HHHHHHHHHHhcC-CCcEEEECC
Confidence 3445555433 343 46667777 9999999998765 467999994
No 121
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=55.19 E-value=46 Score=29.33 Aligned_cols=49 Identities=14% Similarity=-0.000 Sum_probs=29.0
Q ss_pred CCc-EEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHhhc
Q 045940 130 DKP-VGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEV 181 (189)
Q Consensus 130 ~kP-iill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 181 (189)
.+| +++++..-|+......+..+...-. .....+++.-++++++++..+
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~---~~~~~V~ld~ple~~l~RN~~ 174 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYS---LGFCQLFLDCPVESCLLRNKQ 174 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhC---CCEEEEEEeCCHHHHHHHHhc
Confidence 577 4577766566666665555433211 123456777777777777754
No 122
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=55.17 E-value=56 Score=24.29 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=5.6
Q ss_pred CeeEEecCCcc
Q 045940 102 DAFIALPGGYG 112 (189)
Q Consensus 102 da~I~lpGG~G 112 (189)
|++|||+||..
T Consensus 1 d~IvVLG~~~~ 11 (150)
T cd06259 1 DAIVVLGGGVN 11 (150)
T ss_pred CEEEEeCCccC
Confidence 44555555544
No 123
>PRK13059 putative lipid kinase; Reviewed
Probab=55.16 E-value=32 Score=29.20 Aligned_cols=33 Identities=30% Similarity=0.709 Sum_probs=23.2
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEe
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLN 137 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~ 137 (189)
.| .|+.-||=||++|+...+. +.+ .+.|+.++-
T Consensus 57 ~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgviP 89 (295)
T PRK13059 57 YK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGILP 89 (295)
T ss_pred CC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEEC
Confidence 35 5678899999999988763 111 246888773
No 124
>PRK05723 flavodoxin; Provisional
Probab=55.03 E-value=16 Score=28.14 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
++|+|+.+|..++.+ ..|+++.+.+.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 478899888888655 667788888888888764
No 125
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=54.43 E-value=10 Score=26.37 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=30.7
Q ss_pred hcCCCCCcEEEEeCCCCchHHHHHHHH-HHHcCCCCccccCcEEEeCCHHHHHHHhhc
Q 045940 125 QLGIHDKPVGVLNVDGYYDSLLRFFDK-GVEEGFIKSSARNIVISAKNARDLLQGMEV 181 (189)
Q Consensus 125 ~~~~~~kPiill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 181 (189)
+.+.+-+|++.++.+|.++.+.+.++. +.....++-+... ..-+|.+++.+.|++
T Consensus 11 ~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~ 66 (84)
T PF01985_consen 11 KLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAE 66 (84)
T ss_dssp HHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHH
Confidence 333456999999999999999998864 4444444332222 234456666666654
No 126
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=54.35 E-value=31 Score=28.46 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCeeEEec--C--Cc-chHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcE
Q 045940 92 ERKAEMARRADAFIALP--G--GY-GTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIV 166 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lp--G--G~-GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 166 (189)
+...-++..||++|.-. . |+ ++ +.|+++ .++|++..+..+ .+.+. ......+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~---~~Ea~a------~G~PvI~~~~~~-~~~i~-------------~~~~g~~ 315 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGV---LAYAIG------FGKPVISTPVGH-AEEVL-------------DGGTGLL 315 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchH---HHHHHH------cCCCEEecCCCC-hheee-------------eCCCcEE
Confidence 44456678899987532 1 33 34 445553 789999877654 22211 1122233
Q ss_pred EEeCCHHHHHHHhhcCCC
Q 045940 167 ISAKNARDLLQGMEVPNL 184 (189)
Q Consensus 167 ~~~~~~ee~~~~l~~~~~ 184 (189)
.-.+|++++.+.|.+...
T Consensus 316 ~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 316 VPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EcCCCHHHHHHHHHHHHc
Confidence 444678888888876544
No 127
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.25 E-value=24 Score=29.90 Aligned_cols=31 Identities=10% Similarity=0.297 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
||++++|+|+|... ....++..|+++|+.|+
T Consensus 1 ~~~~~~I~vIGaG~---------mG~~iA~~l~~~g~~V~ 31 (311)
T PRK06130 1 MNPIQNLAIIGAGT---------MGSGIAALFARKGLQVV 31 (311)
T ss_pred CCCccEEEEECCCH---------HHHHHHHHHHhCCCeEE
Confidence 89999999998763 44566677788888654
No 128
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=53.92 E-value=82 Score=26.06 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
+....|.++.. |+ ..++++.+.|-.+|..+|+..+. + ..+.++|.+.|..+||+-
T Consensus 153 ~v~~~~~g~~~--D~---~~a~~~a~~l~~~G~DvI~~~~~-~--~g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 153 TVKVIWTGSWF--DP---AKEKEAALALIDQGADVIYQHTD-S--PGVIQAAEEKGVYAIGYV 207 (258)
T ss_pred EEEEEEecCCC--Cc---HHHHHHHHHHHHCCCcEEEecCC-C--hHHHHHHHHhCCEEEeec
Confidence 33444555432 33 55677778787889999998762 4 245667778899999993
No 129
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=53.91 E-value=22 Score=31.58 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=28.3
Q ss_pred CeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 102 DAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 102 da~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
|++|+.-| .-||+|-...+.++-- .+|||+|.+.
T Consensus 102 dGvVItHG-TDTmeeTA~~L~l~l~--~~kPVVlTGa 135 (351)
T COG0252 102 DGVVITHG-TDTMEETAFFLSLTLN--TPKPVVLTGA 135 (351)
T ss_pred CeEEEeCC-CchHHHHHHHHHHHhc--CCCCEEEeCC
Confidence 88888875 8999999988887663 3899999875
No 130
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=53.58 E-value=56 Score=28.26 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=38.5
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 8 CVFCGSNSGNRKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 8 ~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
+++|+||..+.. -.+.-+++.+.|-++++. |++=||. |-|..+.+=+.+.+-.+|||
T Consensus 64 t~LgtsR~~~~~-~~~~~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~~i~vigi 121 (301)
T TIGR02482 64 TILGTARCPEFK-TEEGRQKAVENLKKLGIEGLVVIGGD-GSYTGAQKLYEEGGIPVIGL 121 (301)
T ss_pred ceeccCCCCccC-CHHHHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHhhCCCEEee
Confidence 466777754211 112334667777777776 6666677 99999988776678899997
No 131
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=53.58 E-value=32 Score=28.65 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=42.8
Q ss_pred HHHHHhcCeeEEec--CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCH
Q 045940 95 AEMARRADAFIALP--GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNA 172 (189)
Q Consensus 95 ~~m~~~sda~I~lp--GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 172 (189)
..+...||++|.-. .|+|.- ++|+++ .++|||..+..|. . +.+++ ....+...+++
T Consensus 261 ~~~~~~adi~v~ps~~E~~~~~--~lEAma------~G~PvI~s~~~~~-~---~~i~~----------~~~~~~~~~~~ 318 (358)
T cd03812 261 PELLQAMDVFLFPSLYEGLPLV--LIEAQA------SGLPCILSDTITK-E---VDLTD----------LVKFLSLDESP 318 (358)
T ss_pred HHHHHhcCEEEecccccCCCHH--HHHHHH------hCCCEEEEcCCch-h---hhhcc----------CccEEeCCCCH
Confidence 44678899887543 233333 677774 7999999877642 2 11211 11233444567
Q ss_pred HHHHHHhhcCCCCCC
Q 045940 173 RDLLQGMEVPNLLPS 187 (189)
Q Consensus 173 ee~~~~l~~~~~~~~ 187 (189)
+++.+.|.+....|.
T Consensus 319 ~~~a~~i~~l~~~~~ 333 (358)
T cd03812 319 EIWAEEILKLKSEDR 333 (358)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999998887655553
No 132
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=53.53 E-value=28 Score=30.33 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGG 43 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GG 43 (189)
|.+|+|++|......+.=...|+.+.+.|.+.||.++.-.
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~ 40 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPIL 40 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEE
Confidence 4678888777666677778999999999999999986543
No 133
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=53.37 E-value=36 Score=27.43 Aligned_cols=70 Identities=19% Similarity=0.312 Sum_probs=39.8
Q ss_pred HHHHHHhcCeeEEec--CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCC
Q 045940 94 KAEMARRADAFIALP--GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKN 171 (189)
Q Consensus 94 ~~~m~~~sda~I~lp--GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 171 (189)
...+...||++|... .|.|+- ++|++. .++|++..+..++ . +++++ .....+.-.+|
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~~--~~Ea~~------~g~pvI~~~~~~~-~---~~~~~---------~~~g~~~~~~~ 327 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGLV--LLEAMA------AGLPVVASDVGGI-P---EVVED---------GETGLLVPPGD 327 (374)
T ss_pred HHHHHHhcCEEEecchhccccch--HHHHHH------cCCcEEEeCCCCh-h---HHhcC---------CcceEEeCCCC
Confidence 345567899877543 233332 566663 7899998876432 2 22211 12223334445
Q ss_pred HHHHHHHhhcCCC
Q 045940 172 ARDLLQGMEVPNL 184 (189)
Q Consensus 172 ~ee~~~~l~~~~~ 184 (189)
++++.+.|.+...
T Consensus 328 ~~~l~~~i~~~~~ 340 (374)
T cd03801 328 PEALAEAILRLLD 340 (374)
T ss_pred HHHHHHHHHHHHc
Confidence 7888888876543
No 134
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=53.34 E-value=41 Score=28.24 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=39.8
Q ss_pred HHHHHhcCeeEEec--------CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcE
Q 045940 95 AEMARRADAFIALP--------GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIV 166 (189)
Q Consensus 95 ~~m~~~sda~I~lp--------GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 166 (189)
..+...||++|.-. -|+|+- ++|+++ .++||+.-+..+.- ++++ ......+
T Consensus 259 ~~~~~~ad~~v~ps~~~~~~~~E~~~~~--~~EA~a------~G~PvI~s~~~~~~----e~i~---------~~~~g~~ 317 (367)
T cd05844 259 RELMRRARIFLQPSVTAPSGDAEGLPVV--LLEAQA------SGVPVVATRHGGIP----EAVE---------DGETGLL 317 (367)
T ss_pred HHHHHhCCEEEECcccCCCCCccCCchH--HHHHHH------cCCCEEEeCCCCch----hhee---------cCCeeEE
Confidence 44668899876521 123333 567774 79999988765421 1111 1111222
Q ss_pred EEeCCHHHHHHHhhcCCCC
Q 045940 167 ISAKNARDLLQGMEVPNLL 185 (189)
Q Consensus 167 ~~~~~~ee~~~~l~~~~~~ 185 (189)
.-.+|++++.+.|.+....
T Consensus 318 ~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 318 VPEGDVAALAAALGRLLAD 336 (367)
T ss_pred ECCCCHHHHHHHHHHHHcC
Confidence 2345888888888765443
No 135
>PRK12359 flavodoxin FldB; Provisional
Probab=52.39 E-value=39 Score=26.72 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCeEEEEecCc
Q 045940 50 GLVSQTIFDGGCHVLGVIPKA 70 (189)
Q Consensus 50 ~a~a~ga~~~gg~viGv~p~~ 70 (189)
+...+-..+.|++++|-.|..
T Consensus 102 ~~l~~~l~~~Ga~ivG~~~~~ 122 (172)
T PRK12359 102 GMLHDKLAPKGVKFVGYWPTE 122 (172)
T ss_pred HHHHHHHHhCCCeEEeeEeCC
Confidence 334444444566666665543
No 136
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=52.32 E-value=1.4e+02 Score=27.66 Aligned_cols=133 Identities=21% Similarity=0.175 Sum_probs=66.3
Q ss_pred HHHHHHHHC--CCeEEEcCCCC-------ChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHH
Q 045940 27 DLATQLVER--KINLVYGGGSV-------GLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEM 97 (189)
Q Consensus 27 ~lg~~la~~--g~~lv~GGg~~-------GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m 97 (189)
++-+.|.+. |..+++=|... -..++..++....+-+++=-......+. +....+.+.+-++.+ .+|
T Consensus 286 ~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~----~~p~Nv~i~~w~Pq~-~lL 360 (507)
T PHA03392 286 YLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAI----NLPANVLTQKWFPQR-AVL 360 (507)
T ss_pred HHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCcc----cCCCceEEecCCCHH-HHh
Confidence 444555544 45555655421 2346666665555655443222111110 111234455555553 344
Q ss_pred H-HhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHH
Q 045940 98 A-RRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLL 176 (189)
Q Consensus 98 ~-~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~ 176 (189)
. ..+++|| --||.||..|.. .+++|++.+-. |+|.. ...+++.+.|.-..-....+ +.+++.
T Consensus 361 ~hp~v~~fI-tHGG~~s~~Eal---------~~GvP~v~iP~--~~DQ~-~Na~rv~~~G~G~~l~~~~~----t~~~l~ 423 (507)
T PHA03392 361 KHKNVKAFV-TQGGVQSTDEAI---------DALVPMVGLPM--MGDQF-YNTNKYVELGIGRALDTVTV----SAAQLV 423 (507)
T ss_pred cCCCCCEEE-ecCCcccHHHHH---------HcCCCEEECCC--CccHH-HHHHHHHHcCcEEEeccCCc----CHHHHH
Confidence 3 2355554 567788887664 47999998753 45543 33556666664211111111 556666
Q ss_pred HHhhc
Q 045940 177 QGMEV 181 (189)
Q Consensus 177 ~~l~~ 181 (189)
+.|.+
T Consensus 424 ~ai~~ 428 (507)
T PHA03392 424 LAIVD 428 (507)
T ss_pred HHHHH
Confidence 65544
No 137
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=52.31 E-value=57 Score=28.42 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCeeEEe---cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEE-
Q 045940 92 ERKAEMARRADAFIAL---PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVI- 167 (189)
Q Consensus 92 ~R~~~m~~~sda~I~l---pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~- 167 (189)
+....+...||++|.- ..|+|.. +.|+++ .++||+..+..|. . +++++ .....+.
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma------~G~PVI~s~~gg~-~---Eiv~~---------~~~G~~l~ 326 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMA------AGKPVLASTKGGI-T---EFVLE---------GITGYHLA 326 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHHH------cCCCEEEeCCCCc-H---hhccc---------CCceEEEe
Confidence 4445567899999863 2455654 567774 7999998877542 2 21211 1111111
Q ss_pred EeCCHHHHHHHhhcCCC
Q 045940 168 SAKNARDLLQGMEVPNL 184 (189)
Q Consensus 168 ~~~~~ee~~~~l~~~~~ 184 (189)
-..|++++.+.|.+...
T Consensus 327 ~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 327 EPMTSDSIISDINRTLA 343 (380)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 13578888888766543
No 138
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=51.81 E-value=20 Score=28.31 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHH
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALD 27 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~ 27 (189)
|++|||||||=++.+.-+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 568999999988877777777766
No 139
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.58 E-value=97 Score=26.24 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe--------EEEcCCCCChhHHHHHHHHh--cCCeEEEE
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKIN--------LVYGGGSVGLMGLVSQTIFD--GGCHVLGV 66 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~--------lv~GGg~~GlM~a~a~ga~~--~gg~viGv 66 (189)
+|+|+.. . ++...+.+.++-++|.++|+. +++=||. |.|=.+++-+.. .+-.++||
T Consensus 2 ~i~Ii~~--~--~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGD-GT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 2 KVAIISN--G--DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGGD-GTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred EEEEEeC--C--CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECCc-HHHHHHHHHhcccCCCCeEEEE
Confidence 5888843 2 566778888999888776532 3334456 877777776655 46677777
No 140
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=51.41 E-value=44 Score=27.66 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCeeEEecCC------cchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCc
Q 045940 92 ERKAEMARRADAFIALPGG------YGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNI 165 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpGG------~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~ 165 (189)
+....+...||+++...-. -|.-.=++|++. .++|++..+..++. .+ +++ .....
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a------~G~Pvi~~~~~~~~-~~---i~~---------~~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA------MGLPVISTDVSGIP-EL---VED---------GETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH------cCCCEEecCCCCcc-hh---hhC---------CCceE
Confidence 4555667889987764321 122233677774 79999987765432 21 211 11122
Q ss_pred EEEeCCHHHHHHHhhcCCC
Q 045940 166 VISAKNARDLLQGMEVPNL 184 (189)
Q Consensus 166 i~~~~~~ee~~~~l~~~~~ 184 (189)
+.-.+|++++.+.|.++..
T Consensus 308 ~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 308 LVPPGDPEALADAIERLLD 326 (355)
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 2223488888888876543
No 141
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=51.31 E-value=20 Score=29.92 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=22.9
Q ss_pred CeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 37 INLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
-.|+|||+. |+=.+.++..++.|.+||=.
T Consensus 7 TiLITGG~s-GIGl~lak~f~elgN~VIi~ 35 (245)
T COG3967 7 TILITGGAS-GIGLALAKRFLELGNTVIIC 35 (245)
T ss_pred EEEEeCCcc-hhhHHHHHHHHHhCCEEEEe
Confidence 347888887 99999999999988877643
No 142
>PRK06703 flavodoxin; Provisional
Probab=51.31 E-value=21 Score=26.91 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKIN 38 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~ 38 (189)
|++|.|+.+|..++.. +.|+.+++.|.+.|+.
T Consensus 1 mmkv~IiY~S~tGnT~---~iA~~ia~~l~~~g~~ 32 (151)
T PRK06703 1 MAKILIAYASMSGNTE---DIADLIKVSLDAFDHE 32 (151)
T ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHhcCCc
Confidence 4566666666666444 5566677766666654
No 143
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=50.74 E-value=98 Score=26.09 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=22.7
Q ss_pred eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEe
Q 045940 104 FIALPGGYGTMEELLEMITWSQLGIHDKPVGVLN 137 (189)
Q Consensus 104 ~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~ 137 (189)
+|+.-||=||++|+...+.-... ..+.|+.++-
T Consensus 55 ~vv~~GGDGTi~ev~ngl~~~~~-~~~~~lgiiP 87 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALAQIRD-DAAPALGLLP 87 (293)
T ss_pred EEEEEcCChHHHHHHHHHHhhCC-CCCCcEEEEc
Confidence 67788999999999988731110 1235788773
No 144
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=50.56 E-value=1.5e+02 Score=25.25 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=19.4
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCC-eEEEEe
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGC-HVLGVI 67 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg-~viGv~ 67 (189)
...+|+|+|+.|+|- ..-|+..|. +++.+.
T Consensus 171 ~~VlV~G~G~vG~~a--iqlak~~G~~~Vi~~~ 201 (343)
T PRK09880 171 KRVFVSGVGPIGCLI--VAAVKTLGAAEIVCAD 201 (343)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCcEEEEEe
Confidence 456888877666654 455666676 566663
No 145
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=50.41 E-value=46 Score=27.92 Aligned_cols=31 Identities=26% Similarity=0.569 Sum_probs=24.3
Q ss_pred eEEEcCCCCChhHHHHHHHHhcC-CeEEEEecC
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGG-CHVLGVIPK 69 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~g-g~viGv~p~ 69 (189)
.||.-||. |....++.+..... ...+|++|.
T Consensus 60 ~ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGD-GTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCC-ChHHHHHHHHhcCCCCCcEEEEcC
Confidence 46667778 99999999988743 347999994
No 146
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=50.37 E-value=1.4e+02 Score=27.24 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=50.1
Q ss_pred CCeEEEcCCCCC---hhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEE-----e
Q 045940 36 KINLVYGGGSVG---LMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIA-----L 107 (189)
Q Consensus 36 g~~lv~GGg~~G---lM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~-----l 107 (189)
+..++||+-++| |+.|++..+.+.|.+++-+....+.. + +...+....+ ++-....+..|.+++ +
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~-----~~~~l~~~~~-~~f~~~~~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-H-----LVSAIRSGEM-QRFRQFYRNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-H-----HHHHHhcchH-HHHHHHcccCCEEEEcchhhh
Confidence 345788765544 88888888888787776664321110 0 0000111112 111222345665554 4
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCcEEEEe
Q 045940 108 PGGYGTMEELLEMITWSQLGIHDKPVGVLN 137 (189)
Q Consensus 108 pGG~GTL~El~~~~~~~~~~~~~kPiill~ 137 (189)
.|.-.|.+|+|..+.... ..++++++..
T Consensus 215 ~~k~~~qeelf~l~N~l~--~~~k~IIlts 242 (445)
T PRK12422 215 SGKGATQEEFFHTFNSLH--TEGKLIVISS 242 (445)
T ss_pred cCChhhHHHHHHHHHHHH--HCCCcEEEec
Confidence 555668889988765333 2457777654
No 147
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.34 E-value=37 Score=28.93 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYG 42 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~G 42 (189)
|+|+|+.-.. .+...+.++++.++|.++|+.+..-
T Consensus 1 m~v~iv~~~~---k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 1 MRFGIVARRD---KEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred CEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4688885443 3567788899999999999987764
No 148
>PRK00861 putative lipid kinase; Reviewed
Probab=50.17 E-value=87 Score=26.44 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=21.5
Q ss_pred eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEE
Q 045940 104 FIALPGGYGTMEELLEMITWSQLGIHDKPVGVL 136 (189)
Q Consensus 104 ~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill 136 (189)
.|+.-||=||++|+...+. ....|+.++
T Consensus 60 ~vv~~GGDGTl~evv~~l~-----~~~~~lgvi 87 (300)
T PRK00861 60 LIIASGGDGTLSAVAGALI-----GTDIPLGII 87 (300)
T ss_pred EEEEECChHHHHHHHHHHh-----cCCCcEEEE
Confidence 5667899999999988773 235678777
No 149
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=49.94 E-value=1.6e+02 Score=25.11 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=19.9
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCe-EEEEec
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCH-VLGVIP 68 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~-viGv~p 68 (189)
...+|+|+|+.|+ ++..-|+..|.. ++.+..
T Consensus 178 ~~VlV~G~g~vG~--~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 178 DSVAVIGCGGVGD--AAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CEEEEECCCHHHH--HHHHHHHHcCCCeEEEEcC
Confidence 4668887655444 455667777874 777743
No 150
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=49.85 E-value=64 Score=24.56 Aligned_cols=45 Identities=11% Similarity=-0.000 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 21 FSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 21 ~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
+-.-..-+...|-.+||.+++-|-. =-.+.+.+.|.+.+..+||+
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILV 58 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 3344456777888899999999987 88899999999999999999
No 151
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=49.61 E-value=44 Score=30.17 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=34.5
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC-----CCchHHHHHHH
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD-----GYYDSLLRFFD 150 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~-----g~~~~l~~~l~ 150 (189)
.|+|||.-| .-||+|-..++.++-- ..+|||||.+.- --.|...+++.
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~-~~~kPVVlTGAqrp~~~~~sDa~~NL~~ 192 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFE-TLPVPVVLVGAQRSSDRPSSDAALNLIC 192 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhh-CCCCCEEEECCCCCCCCCCchHHHHHHH
Confidence 689999886 8999999888876442 238999999762 13455556554
No 152
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=48.69 E-value=55 Score=27.19 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=41.3
Q ss_pred HHHHHHhcCeeEEec---CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeC
Q 045940 94 KAEMARRADAFIALP---GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAK 170 (189)
Q Consensus 94 ~~~m~~~sda~I~lp---GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 170 (189)
.......||++|.-. .|+|+. ++|+++ .++|+|..+..+ ...+. ++ + ....+.-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~~--l~EA~a------~G~PvI~~~~~~-~~e~i---~~----~-----~~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGRT--AVEAQA------MGRPVIASDHGG-ARETV---RP----G-----ETGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCchH--HHHHHh------cCCCEEEcCCCC-cHHHH---hC----C-----CceEEeCCC
Confidence 345667899987644 355643 577774 799999887654 33322 11 1 123344457
Q ss_pred CHHHHHHHhhc
Q 045940 171 NARDLLQGMEV 181 (189)
Q Consensus 171 ~~ee~~~~l~~ 181 (189)
|++++.+.|..
T Consensus 316 ~~~~l~~~i~~ 326 (355)
T cd03819 316 DAEALAQALDQ 326 (355)
T ss_pred CHHHHHHHHHH
Confidence 88888888853
No 153
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=48.65 E-value=37 Score=22.93 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=17.2
Q ss_pred cEEEeCCHHHHHHHhhcCCCCC
Q 045940 165 IVISAKNARDLLQGMEVPNLLP 186 (189)
Q Consensus 165 ~i~~~~~~ee~~~~l~~~~~~~ 186 (189)
.+.+++|++|+.+.+..+...|
T Consensus 42 ~~~~~~~~~el~~~i~~ll~~~ 63 (92)
T PF13524_consen 42 HIITYNDPEELAEKIEYLLENP 63 (92)
T ss_pred eEEEECCHHHHHHHHHHHHCCH
Confidence 5667779999999998876554
No 154
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=48.47 E-value=34 Score=27.51 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCCCC-hHHHHHHHHHHHHHHHCCCe-EEEc
Q 045940 4 FKRVCVFCGSNSGNR-KIFSDAALDLATQLVERKIN-LVYG 42 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~-~~~~~~A~~lg~~la~~g~~-lv~G 42 (189)
|++|+|.|....++. =-+...+++|+..|+++|+. -||.
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc 41 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYC 41 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEE
Confidence 789999998866432 33788999999999998886 3443
No 155
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=48.45 E-value=1.2e+02 Score=22.96 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 23 DAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 23 ~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
.-..-+...|-.+||.+++-|-. =-.+...+.|.+.+..+||+
T Consensus 14 iGkniv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 14 VGNKILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 34456677778899999999987 77899999999999999999
No 156
>PRK13054 lipid kinase; Reviewed
Probab=48.43 E-value=1.1e+02 Score=25.88 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=22.4
Q ss_pred eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEe
Q 045940 104 FIALPGGYGTMEELLEMITWSQLGIHDKPVGVLN 137 (189)
Q Consensus 104 ~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~ 137 (189)
.|+.-||=||++|+...+.... ..++.|+.++-
T Consensus 59 ~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgiiP 91 (300)
T PRK13054 59 TVIAGGGDGTINEVATALAQLE-GDARPALGILP 91 (300)
T ss_pred EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEEe
Confidence 6778899999999988773211 11245777773
No 157
>PRK09271 flavodoxin; Provisional
Probab=48.31 E-value=26 Score=26.94 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINL 39 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~l 39 (189)
+|.|+.+|..++.. +.|+.+.+.|.+.|+.+
T Consensus 2 kv~IvY~S~tGnTe---~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGNTR---EVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCchHH---HHHHHHHHHHHhCCCee
Confidence 56666666666444 55667777776666654
No 158
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=48.27 E-value=44 Score=27.57 Aligned_cols=38 Identities=18% Similarity=0.039 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINL 39 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~l 39 (189)
|.++++|.+++||... ++.-...|+.+.+.+...|+.+
T Consensus 23 ~~~~~kI~~I~GSlR~-~S~n~~la~~~~~~~~~~g~~v 60 (219)
T TIGR02690 23 KPHIPRILLLYGSLRE-RSYSRLLAEEAARLLGCEGRET 60 (219)
T ss_pred CCCCCEEEEEECCCCC-cchHHHHHHHHHHHHhhcCCEE
Confidence 3567777777776543 4444566666666666555544
No 159
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=48.16 E-value=42 Score=24.52 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|+|+|+|.|... +. .++.+-+.|.++|+.++
T Consensus 1 ksiAVvGaS~~~-~~----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNP-GK----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SST-TS----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCC-CC----hHHHHHHHHHhCCCEEE
Confidence 689999988643 22 35566667766777655
No 160
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=48.13 E-value=26 Score=26.08 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=24.4
Q ss_pred CeEEEcCCCCChhHHHHHHHHhcCCeEEEEec
Q 045940 37 INLVYGGGSVGLMGLVSQTIFDGGCHVLGVIP 68 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p 68 (189)
..||+||.. |+=.++++...+.|+.++.++-
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~~ 32 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVILTS 32 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEEEE
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEEee
Confidence 458899988 9999999999988776655543
No 161
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.00 E-value=1e+02 Score=26.46 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=39.1
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe---------------------------EEEcCCCCChhHHHHHH
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKIN---------------------------LVYGGGSVGLMGLVSQT 55 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~---------------------------lv~GGg~~GlM~a~a~g 55 (189)
.+++|+|+.-.. +...+.+.++.++|.++|+. +++=||. |.|=-+++-
T Consensus 9 ~~~~i~ii~~~~----~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGD-GT~L~aa~~ 83 (287)
T PRK14077 9 NIKKIGLVTRPN----VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGD-GTLISLCRK 83 (287)
T ss_pred cCCEEEEEeCCc----HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCC-HHHHHHHHH
Confidence 467899997543 25677778888877654422 2333456 887766666
Q ss_pred HHhcCCeEEEE
Q 045940 56 IFDGGCHVLGV 66 (189)
Q Consensus 56 a~~~gg~viGv 66 (189)
+...+-.++||
T Consensus 84 ~~~~~~PilGI 94 (287)
T PRK14077 84 AAEYDKFVLGI 94 (287)
T ss_pred hcCCCCcEEEE
Confidence 66667788888
No 162
>PRK14072 6-phosphofructokinase; Provisional
Probab=48.00 E-value=72 Score=28.90 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=37.4
Q ss_pred EEEcCCCCCC-----ChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHH---hcC--CeEEEE
Q 045940 8 CVFCGSNSGN-----RKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIF---DGG--CHVLGV 66 (189)
Q Consensus 8 ~V~g~s~~~~-----~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~---~~g--g~viGv 66 (189)
++.|+||... +++.+ .++.+.|.+.|+. ||+=||. |-|..+.+=+- +.| -.||||
T Consensus 73 t~LgssR~~~~~~~~~~~~~---~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 73 GALGSCRYKLKSLEEDRAEY---ERLLEVFKAHDIGYFFYNGGN-DSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred eEeccCCCCCcccccChHHH---HHHHHHHHHcCCCEEEEECCh-HHHHHHHHHHHHHHHhCCCceEEEe
Confidence 4778888764 23334 4566777777776 6666778 99988876443 345 688998
No 163
>PRK06849 hypothetical protein; Provisional
Probab=47.74 E-value=32 Score=30.24 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGS 45 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~ 45 (189)
|++.++|-|.|++.. .+..+.|.|.++|+.++.....
T Consensus 1 ~~~~~~VLI~G~~~~--------~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 1 MNTKKTVLITGARAP--------AALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCCCEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEeCC
Confidence 778899999987753 4667777888889988765544
No 164
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=47.68 E-value=60 Score=23.08 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHHHhcCeeEEec-CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCC
Q 045940 93 RKAEMARRADAFIALP-GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKN 171 (189)
Q Consensus 93 R~~~m~~~sda~I~lp-GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 171 (189)
...-++..+|+.|..- =+.++-.-++|++ ..++|++..+. + +..+. .... ..+.+.+|
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~------~~G~pvi~~~~-~-~~~~~------------~~~~-~~~~~~~~ 121 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAM------AAGKPVIASDN-G-AEGIV------------EEDG-CGVLVAND 121 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHH------CTT--EEEEHH-H-CHCHS---------------S-EEEE-TT-
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHH------HhCCCEEECCc-c-hhhhe------------eecC-CeEEECCC
Confidence 3455567789877632 1335556677777 48999998764 2 22221 1112 22344899
Q ss_pred HHHHHHHhhcC
Q 045940 172 ARDLLQGMEVP 182 (189)
Q Consensus 172 ~ee~~~~l~~~ 182 (189)
++++.+.|.+.
T Consensus 122 ~~~l~~~i~~l 132 (135)
T PF13692_consen 122 PEELAEAIERL 132 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 165
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=47.31 E-value=51 Score=28.61 Aligned_cols=73 Identities=11% Similarity=0.015 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCeeEEe--cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEe
Q 045940 92 ERKAEMARRADAFIAL--PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISA 169 (189)
Q Consensus 92 ~R~~~m~~~sda~I~l--pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 169 (189)
+....+...||++|.. +.++|. =+.|+++ .++|||..+..|. .++++ ......+.-.
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g~----~e~i~---------~~~~G~lv~~ 350 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAPV----REVIT---------DGENGLLVDF 350 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCCc----hhhcc---------cCCceEEcCC
Confidence 3334566889998864 344442 2567774 7999998876542 22221 1112223334
Q ss_pred CCHHHHHHHhhcCCCC
Q 045940 170 KNARDLLQGMEVPNLL 185 (189)
Q Consensus 170 ~~~ee~~~~l~~~~~~ 185 (189)
+|++++.+.|.+....
T Consensus 351 ~d~~~la~~i~~ll~~ 366 (396)
T cd03818 351 FDPDALAAAVIELLDD 366 (396)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 5888888888765443
No 166
>PRK08226 short chain dehydrogenase; Provisional
Probab=47.21 E-value=1.3e+02 Score=24.14 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=24.5
Q ss_pred CCCC--eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 045940 1 MGKF--KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGS 45 (189)
Q Consensus 1 ~~~~--~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~ 45 (189)
|.++ +++.|.|+++ -..+.+.+.|+++|+.++.=+..
T Consensus 1 ~~~~~~~~~lItG~s~--------giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 1 MGKLTGKTALITGALQ--------GIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CCCCCCCEEEEeCCCC--------hHHHHHHHHHHHCCCEEEEecCC
Confidence 4444 6778888775 24456777778889987655444
No 167
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=47.19 E-value=13 Score=37.15 Aligned_cols=49 Identities=33% Similarity=0.432 Sum_probs=34.1
Q ss_pred HHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhc-----------CCeEEEEecCcccccc
Q 045940 25 ALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDG-----------GCHVLGVIPKALVPIE 75 (189)
Q Consensus 25 A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~-----------gg~viGv~p~~~~~~e 75 (189)
=.+|+|.|.-+-+.||.||| |.=+++.-|++.+ ||.+||-.-..++..|
T Consensus 828 FsRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~e 887 (1158)
T KOG2968|consen 828 FSRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAEE 887 (1158)
T ss_pred HHHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhcc
Confidence 34577788888899999986 6677777776653 6777776555555443
No 168
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=47.09 E-value=1.9e+02 Score=24.91 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHHHHCCCeE-----EEcCCCCC---------hhHHHHHHHHhcCCeEEEEecCccccccccCCCCc
Q 045940 17 NRKIFSDAALDLATQLVERKINL-----VYGGGSVG---------LMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVG 82 (189)
Q Consensus 17 ~~~~~~~~A~~lg~~la~~g~~l-----v~GGg~~G---------lM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~ 82 (189)
+.++..+..+++.+.....|..| ..||...| =.+.+.+=+.+-|-..+.|--. ..|-.|.
T Consensus 109 ~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiG------t~HG~Y~ 182 (283)
T PRK07998 109 PFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIG------NVHGLED 182 (283)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcc------ccccCCC
Confidence 35667788888888888888765 12332212 1122233333333333322100 0121221
Q ss_pred eEEecCCH-HHHHHHHHHhcCeeEEecCCcchHHHHHHHH
Q 045940 83 DVLIVSDM-HERKAEMARRADAFIALPGGYGTMEELLEMI 121 (189)
Q Consensus 83 ~~~~~~~~-~~R~~~m~~~sda~I~lpGG~GTL~El~~~~ 121 (189)
. +.+ .+|.+.+.+..|.-++|-||.|+-+|-+...
T Consensus 183 ~----p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~a 218 (283)
T PRK07998 183 I----PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSF 218 (283)
T ss_pred C----CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHH
Confidence 1 333 5788888888999999999999998877544
No 169
>PRK05568 flavodoxin; Provisional
Probab=46.99 E-value=37 Score=25.03 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=8.7
Q ss_pred CCCcEEEEeCCCC
Q 045940 129 HDKPVGVLNVDGY 141 (189)
Q Consensus 129 ~~kPiill~~~g~ 141 (189)
.+|+++++.+.|+
T Consensus 81 ~~k~~~~f~t~G~ 93 (142)
T PRK05568 81 KGKKLVLFGSYGW 93 (142)
T ss_pred CCCEEEEEEccCC
Confidence 4677777776654
No 170
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=46.97 E-value=61 Score=28.70 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=40.9
Q ss_pred HHHHHhcCeeEEec--------CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcE
Q 045940 95 AEMARRADAFIALP--------GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIV 166 (189)
Q Consensus 95 ~~m~~~sda~I~lp--------GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 166 (189)
..+...||++|.-. -|+|.. +.|+++ .++|||..+..|. .+++++ .....+
T Consensus 293 ~~~l~~aDv~v~pS~~~~~g~~Eg~p~~--llEAma------~G~PVI~t~~~g~----~E~v~~---------~~~G~l 351 (406)
T PRK15427 293 KAMLDDADVFLLPSVTGADGDMEGIPVA--LMEAMA------VGIPVVSTLHSGI----PELVEA---------DKSGWL 351 (406)
T ss_pred HHHHHhCCEEEECCccCCCCCccCccHH--HHHHHh------CCCCEEEeCCCCc----hhhhcC---------CCceEE
Confidence 45668899988632 344433 677774 7999998876642 222211 112223
Q ss_pred EEeCCHHHHHHHhhcCCC
Q 045940 167 ISAKNARDLLQGMEVPNL 184 (189)
Q Consensus 167 ~~~~~~ee~~~~l~~~~~ 184 (189)
.-..|++++.+.|.+...
T Consensus 352 v~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 352 VPENDAQALAQRLAAFSQ 369 (406)
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 334588888888876544
No 171
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=46.92 E-value=31 Score=29.98 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=33.7
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC-----CCchHHHHHHHH
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD-----GYYDSLLRFFDK 151 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~-----g~~~~l~~~l~~ 151 (189)
..|+|||.-| .-||+|....+.++- ...+||||+.+.- --.|...++++-
T Consensus 77 ~~dG~VVtHG-TDTmeeTA~~Ls~~l-~~l~kPVVlTGa~rp~~~~~sDg~~NL~~A 131 (323)
T smart00870 77 GYDGVVVTHG-TDTLEETAYFLSLTL-DSLDKPVVLTGAMRPATALSSDGPANLLDA 131 (323)
T ss_pred CCCEEEEecC-CccHHHHHHHHHHHh-hcCCCCEEEECCCCCCCCCCchhHHHHHHH
Confidence 4588888875 899999988876532 2338999998651 134455555543
No 172
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=46.90 E-value=50 Score=28.88 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=36.3
Q ss_pred HhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC-----CCchHHHHHHHH
Q 045940 99 RRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD-----GYYDSLLRFFDK 151 (189)
Q Consensus 99 ~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~-----g~~~~l~~~l~~ 151 (189)
+..|+|||.-| .-||+|-...+.++-. ..+|||||.+.- --.|...++.+-
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l~-~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFMLE-NLGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHHh-CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 45799999986 8999999888775432 248999998752 234566665553
No 173
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=46.86 E-value=65 Score=28.30 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=36.9
Q ss_pred HHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHH
Q 045940 97 MARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLL 176 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~ 176 (189)
++..||.+| ||-||+. .|+. ..+.|.|-+.+ |.+...-.+ +++.| .++.++|++|++
T Consensus 245 Ll~~a~l~I---g~ggTMa--~EAA------~LGtPaIs~~~-g~~~~vd~~---L~~~G--------ll~~~~~~~ei~ 301 (335)
T PF04007_consen 245 LLYYADLVI---GGGGTMA--REAA------LLGTPAISCFP-GKLLAVDKY---LIEKG--------LLYHSTDPDEIV 301 (335)
T ss_pred HHHhcCEEE---eCCcHHH--HHHH------HhCCCEEEecC-CcchhHHHH---HHHCC--------CeEecCCHHHHH
Confidence 445566555 4555663 4554 35889985533 233333233 34444 477889999999
Q ss_pred HHhhc
Q 045940 177 QGMEV 181 (189)
Q Consensus 177 ~~l~~ 181 (189)
+.+.+
T Consensus 302 ~~v~~ 306 (335)
T PF04007_consen 302 EYVRK 306 (335)
T ss_pred HHHHH
Confidence 98864
No 174
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=46.84 E-value=17 Score=31.84 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCchHHHHHHHHHHHcCCCCccccCcE---EEeCCHHHHHHHhhc
Q 045940 140 GYYDSLLRFFDKGVEEGFIKSSARNIV---ISAKNARDLLQGMEV 181 (189)
Q Consensus 140 g~~~~l~~~l~~~~~~g~i~~~~~~~i---~~~~~~ee~~~~l~~ 181 (189)
.+|+-+..-+..|+.+|.|+++..+.+ .+..++||+-+.|++
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~ 242 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEE 242 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhc
Confidence 478888888899999999999877544 789999999888764
No 175
>PRK13337 putative lipid kinase; Reviewed
Probab=46.36 E-value=1e+02 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=21.6
Q ss_pred eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEE
Q 045940 104 FIALPGGYGTMEELLEMITWSQLGIHDKPVGVL 136 (189)
Q Consensus 104 ~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill 136 (189)
.|+.-||=||++|+...+.. . ....|+.++
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~--~-~~~~~lgii 89 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAE--K-ENRPKLGII 89 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhh--C-CCCCcEEEE
Confidence 67788999999999987631 1 123577777
No 176
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=46.29 E-value=17 Score=32.83 Aligned_cols=27 Identities=37% Similarity=0.651 Sum_probs=19.9
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
.+|-|||+.|+|.|+.-+- +|.+|+=+
T Consensus 6 viIIGgGpAGlMaA~~aa~--~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISAAK--AGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHHhh--cCCEEEEE
Confidence 5788999999999887544 56555544
No 177
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=46.25 E-value=42 Score=30.42 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------CChhHHHHHHHHhc
Q 045940 23 DAALDLATQLVERKINLVYGGGS----------VGLMGLVSQTIFDG 59 (189)
Q Consensus 23 ~~A~~lg~~la~~g~~lv~GGg~----------~GlM~a~a~ga~~~ 59 (189)
+-|++|+..|-++||.||+||-. .|+.++.++-.++.
T Consensus 328 ~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 328 KNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 45778888888899999999953 58889988888874
No 178
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=46.10 E-value=2.3e+02 Score=25.59 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=26.5
Q ss_pred HhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 99 RRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 99 ~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
+..|++|+.-.-+||-..+..... ..++|++++...
T Consensus 62 ~~~d~ii~~~~tf~~~~~~~~~~~-----~~~~Pvll~a~~ 97 (452)
T cd00578 62 ANCDGLIVWMHTFGPAKMWIAGLS-----ELRKPVLLLATQ 97 (452)
T ss_pred cCCcEEEEcccccccHHHHHHHHH-----hcCCCEEEEeCC
Confidence 357888888888888766665542 368999999754
No 179
>PRK14557 pyrH uridylate kinase; Provisional
Probab=45.71 E-value=36 Score=28.46 Aligned_cols=45 Identities=27% Similarity=0.524 Sum_probs=26.6
Q ss_pred CCCCeEEEE-EcCCCCCCCh---HHHHHHHHHHHHHH---HCCC--eEEEcCCC
Q 045940 1 MGKFKRVCV-FCGSNSGNRK---IFSDAALDLATQLV---ERKI--NLVYGGGS 45 (189)
Q Consensus 1 ~~~~~~I~V-~g~s~~~~~~---~~~~~A~~lg~~la---~~g~--~lv~GGg~ 45 (189)
|.+.++|.+ |||+....+. .-.+..+++.+.|+ +.|+ .||.|||.
T Consensus 1 ~~~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn 54 (247)
T PRK14557 1 MRPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGN 54 (247)
T ss_pred CCcccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcH
Confidence 667777777 7777764321 11334555555555 3454 57888864
No 180
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=45.50 E-value=54 Score=24.05 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=24.0
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCC----eEEEEecC
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGC----HVLGVIPK 69 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg----~viGv~p~ 69 (189)
.|+..||. |....+..+-.+... ..+|++|.
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 56667777 999999998886654 46999984
No 181
>PRK09330 cell division protein FtsZ; Validated
Probab=45.48 E-value=1.1e+02 Score=27.45 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=40.9
Q ss_pred HHHHHHHCCCeEEE---cCCC-CChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCe
Q 045940 28 LATQLVERKINLVY---GGGS-VGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADA 103 (189)
Q Consensus 28 lg~~la~~g~~lv~---GGg~-~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda 103 (189)
+-+.|-..+..+|+ |||. +|.=-.+++-|.+.|..+++|.+..+. .|-. .....-..--..|.+.+|.
T Consensus 91 I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~-fEG~-------~r~~nA~~gL~~L~~~~D~ 162 (384)
T PRK09330 91 IREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFS-FEGK-------KRMKQAEEGIEELRKHVDT 162 (384)
T ss_pred HHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCcc-ccch-------hHHHHHHHHHHHHHHHCCE
Confidence 33444334555444 3332 466668889999999999999764221 1100 0111112334456677888
Q ss_pred eEEec
Q 045940 104 FIALP 108 (189)
Q Consensus 104 ~I~lp 108 (189)
+|++|
T Consensus 163 vIvi~ 167 (384)
T PRK09330 163 LIVIP 167 (384)
T ss_pred EEEEe
Confidence 88776
No 182
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=45.41 E-value=43 Score=29.04 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|+|+ +|+|.+|......+.=.+.|+.+.+.|.+.+|.++
T Consensus 1 m~~~-~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 1 MNRI-KVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred CCCc-EEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 5554 56666555555567778999999999999999976
No 183
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=45.13 E-value=1.7e+02 Score=23.94 Aligned_cols=88 Identities=23% Similarity=0.294 Sum_probs=55.4
Q ss_pred HHHHHH-CCCeEEEcCCCCChhHHHHHHHHhc-CCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEE
Q 045940 29 ATQLVE-RKINLVYGGGSVGLMGLVSQTIFDG-GCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIA 106 (189)
Q Consensus 29 g~~la~-~g~~lv~GGg~~GlM~a~a~ga~~~-gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~ 106 (189)
-+.|++ +|-.+|+|-|.+|+++-.--.-+.+ |-++.-|-|..- .|- ++ =|+..-|.+|+
T Consensus 32 ~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea-----~hg---dl-----------g~i~~~Dvvia 92 (202)
T COG0794 32 VELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEA-----LHG---DL-----------GMITPGDVVIA 92 (202)
T ss_pred HHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCceEEecCchh-----ccC---Cc-----------cCCCCCCEEEE
Confidence 344444 7899999999999998766555554 445555544321 111 11 23466788888
Q ss_pred ecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 107 LPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 107 lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
+.|+ |--.|+..+....+ ..+.|++.+-.
T Consensus 93 iS~S-GeT~el~~~~~~aK--~~g~~liaiT~ 121 (202)
T COG0794 93 ISGS-GETKELLNLAPKAK--RLGAKLIAITS 121 (202)
T ss_pred EeCC-CcHHHHHHHHHHHH--HcCCcEEEEeC
Confidence 8874 66677877765443 45678887743
No 184
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=45.06 E-value=49 Score=28.10 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=40.7
Q ss_pred HHHhcCeeEEecC--CcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHH
Q 045940 97 MARRADAFIALPG--GYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARD 174 (189)
Q Consensus 97 m~~~sda~I~lpG--G~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee 174 (189)
+...||++|...- |+|.. +.|+++ +++|+|..+....-. +++ .......+.-..|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~~--~lEAma------~G~PvI~~~~~~g~~---~~v---------~~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGLS--LMEALS------HGLPVISYDVNYGPS---EII---------EDGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccChH--HHHHHh------CCCCEEEecCCCCcH---HHc---------ccCCCceEeCCCcHHH
Confidence 4567898887652 44432 567774 899999987652112 111 1112223333348888
Q ss_pred HHHHhhcCCCCC
Q 045940 175 LLQGMEVPNLLP 186 (189)
Q Consensus 175 ~~~~l~~~~~~~ 186 (189)
+.+.|.++...|
T Consensus 335 la~~i~~ll~~~ 346 (372)
T cd04949 335 LAEAIIELLNDP 346 (372)
T ss_pred HHHHHHHHHcCH
Confidence 888887665443
No 185
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.98 E-value=1.3e+02 Score=25.59 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=18.8
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
.+ ++.-||. |.|-.+++ ....+-.++||-
T Consensus 59 d~-vi~iGGD-GTlL~a~~-~~~~~~pi~gIn 87 (277)
T PRK03708 59 DF-IIAIGGD-GTILRIEH-KTKKDIPILGIN 87 (277)
T ss_pred CE-EEEEeCc-HHHHHHHH-hcCCCCeEEEEe
Confidence 44 4444557 98887777 666666777773
No 186
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=44.83 E-value=1.2e+02 Score=26.85 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCeeEEe-cC--CcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEE
Q 045940 91 HERKAEMARRADAFIAL-PG--GYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVI 167 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~l-pG--G~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~ 167 (189)
.+....+...||++|.+ +. |.|--.-++|+++ .++||+..+..| ..+.+ +++ ... +.
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~~----~~eiv----~~~-----~~G-~l 364 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFKC----IDELV----KHG-----ENG-LV 364 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCCC----HHHHh----cCC-----CCE-EE
Confidence 34445577899999853 21 2233334677774 799999877643 22222 211 112 22
Q ss_pred EeCCHHHHHHHhhcCCCC
Q 045940 168 SAKNARDLLQGMEVPNLL 185 (189)
Q Consensus 168 ~~~~~ee~~~~l~~~~~~ 185 (189)
++|++++.+.|.+....
T Consensus 365 -v~d~~~la~~i~~ll~~ 381 (415)
T cd03816 365 -FGDSEELAEQLIDLLSN 381 (415)
T ss_pred -ECCHHHHHHHHHHHHhc
Confidence 36899999988776544
No 187
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.61 E-value=1.4e+02 Score=22.60 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 21 FSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 21 ~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
+---..-+...|..+||.++|-|-. =-.+.+.+.|.+.+-.++++
T Consensus 16 H~lG~~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 16 HAVGNKILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILV 60 (137)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 3333445666777899999999876 55788889999999999999
No 188
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=44.24 E-value=41 Score=25.16 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCeeEEec-----CCcchHHHHHHHHHHHhcCCCCCcEEEE
Q 045940 92 ERKAEMARRADAFIALP-----GGYGTMEELLEMITWSQLGIHDKPVGVL 136 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lp-----GG~GTL~El~~~~~~~~~~~~~kPiill 136 (189)
+=.+.+++.+|++|++. =+.|+.-|+-.+.+ +++||.++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 33456778999999986 35899999988875 78999874
No 189
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=44.13 E-value=1.1e+02 Score=26.71 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=36.0
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 8 CVFCGSNSGNRKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 8 ~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
+++|+||..... -.+.-++..+.|-++++. |++=||. |-|..+.+=+. .|-.+|||
T Consensus 65 t~LgtsR~~~~~-~~~~~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e-~~i~vigi 121 (317)
T cd00763 65 TFLGSARFPEFK-DEEGQAKAIEQLKKHGIDALVVIGGD-GSYMGAMRLTE-HGFPCVGL 121 (317)
T ss_pred eeeccCCCCccC-CHHHHHHHHHHHHHcCCCEEEEECCc-hHHHHHHHHHH-cCCCEEEe
Confidence 567888753211 122334666777777776 5556667 99998877443 47888888
No 190
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=43.96 E-value=53 Score=23.22 Aligned_cols=37 Identities=27% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCeeEEecC---CcchHHHHHHHHHHHhcCCCCCcEE
Q 045940 92 ERKAEMARRADAFIALPG---GYGTMEELLEMITWSQLGIHDKPVG 134 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpG---G~GTL~El~~~~~~~~~~~~~kPii 134 (189)
.+.-.|+..+|+++.||| +-|..-|...+-. .++||+
T Consensus 51 ~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~------lGl~V~ 90 (92)
T PF14359_consen 51 RICLAMLSDCDAIYMLPGWENSRGARLEHELAKK------LGLPVI 90 (92)
T ss_pred HHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHH------CCCeEe
Confidence 444556679999999998 5899988887763 566664
No 191
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=43.83 E-value=35 Score=29.97 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=12.8
Q ss_pred CCCCeEEEEEcCCCC
Q 045940 1 MGKFKRVCVFCGSNS 15 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~ 15 (189)
|++|++|+|.|++..
T Consensus 1 m~~~~~IaIvGATG~ 15 (336)
T PRK05671 1 MSQPLDIAVVGATGT 15 (336)
T ss_pred CCCCCEEEEEccCCH
Confidence 889999999998753
No 192
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=43.57 E-value=91 Score=27.65 Aligned_cols=57 Identities=25% Similarity=0.227 Sum_probs=39.7
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 8 CVFCGSNSGNRKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 8 ~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
++.++|+.+... -.+......+.|.++|.. ||.=||. |-+..+.+=+-+.+-.+|||
T Consensus 67 T~lgssR~~~~~-~~e~~~~~~~~l~~~gId~LvvIGGD-gS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 67 TFLGSARFPEFK-TEEGRKVAAENLKKLGIDALVVIGGD-GSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred eEEeeCCCCCcc-cHHHHHHHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHhcCCcEEec
Confidence 467788776432 222223666777888776 6666778 88888888777777889998
No 193
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=43.52 E-value=1.9e+02 Score=25.51 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=45.3
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHH-CCCeEEEc----CCCCChhHHHHHHHHhcCCeEEEEecCccc
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVE-RKINLVYG----GGSVGLMGLVSQTIFDGGCHVLGVIPKALV 72 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~-~g~~lv~G----Gg~~GlM~a~a~ga~~~gg~viGv~p~~~~ 72 (189)
|++++.|-++|..+. ++...+..++|++.+.+ .+..+.++ ..| -+.+++. ...+.|.+-|-|+|-++.
T Consensus 3 ~~~~~aiLLvgHGSR--dp~~~~~~~~La~~l~~~~~~~V~~aFLE~~eP-sl~eal~-~l~~~G~~~IvVvPlFL~ 75 (335)
T PRK05782 3 RQSNTAIILIGHGSR--RETFNSDMEGMANYLKEKLGVPIYLTYNEFAEP-NWRSLLN-EIIKEGYRRVIIALAFLG 75 (335)
T ss_pred CCCCceEEEEecCCC--ChHHHHHHHHHHHHHHhccCCceEEEEeccCCC-CHHHHHH-HHHHCCCCEEEEeccccc
Confidence 456666666665543 67788888888888865 46666665 556 6666664 455567777888885543
No 194
>PLN02275 transferase, transferring glycosyl groups
Probab=43.49 E-value=1.7e+02 Score=25.24 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCeeEEec-C--CcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEE
Q 045940 91 HERKAEMARRADAFIALP-G--GYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVI 167 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lp-G--G~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~ 167 (189)
.+.-..+...||++|... . +.|--.=+.|+++ .++||+..+.+| ..+.+ ++| ... .
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg----~~eiv----~~g-----~~G--~ 355 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSC----IGELV----KDG-----KNG--L 355 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCC----hHHHc----cCC-----CCe--E
Confidence 344456678999998631 1 1222333677774 799999887654 22222 211 112 2
Q ss_pred EeCCHHHHHHHhhc
Q 045940 168 SAKNARDLLQGMEV 181 (189)
Q Consensus 168 ~~~~~ee~~~~l~~ 181 (189)
+++|++++.+.|.+
T Consensus 356 lv~~~~~la~~i~~ 369 (371)
T PLN02275 356 LFSSSSELADQLLE 369 (371)
T ss_pred EECCHHHHHHHHHH
Confidence 34579998888765
No 195
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=43.35 E-value=65 Score=27.79 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCeeEEe--cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 045940 91 HERKAEMARRADAFIAL--PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDG 140 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~l--pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g 140 (189)
.+....+...||++|.- ..|+|.. +.|++. .++||+..+..|
T Consensus 293 ~~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma------~G~Pvi~~~~~~ 336 (405)
T TIGR03449 293 PEELVHVYRAADVVAVPSYNESFGLV--AMEAQA------CGTPVVAARVGG 336 (405)
T ss_pred HHHHHHHHHhCCEEEECCCCCCcChH--HHHHHH------cCCCEEEecCCC
Confidence 34455677899998763 3566654 667764 789999887653
No 196
>PRK13937 phosphoheptose isomerase; Provisional
Probab=43.32 E-value=58 Score=25.75 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEEEcCCCCChh
Q 045940 18 RKIFSDAALDLATQLVERKINLVYGGGSVGLM 49 (189)
Q Consensus 18 ~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM 49 (189)
.+...+.|.++.+.|.+.+...++|-|.++..
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~ 52 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAAD 52 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHHH
Confidence 46778899999999999999999999885553
No 197
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=43.21 E-value=61 Score=23.23 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=35.5
Q ss_pred CCCCCcEEEEeCCCCchHHHHHHH-HHHHcCCCCccccCcEEEeCCHHHHHHHhhc
Q 045940 127 GIHDKPVGVLNVDGYYDSLLRFFD-KGVEEGFIKSSARNIVISAKNARDLLQGMEV 181 (189)
Q Consensus 127 ~~~~kPiill~~~g~~~~l~~~l~-~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 181 (189)
+.+=+|++.++.+|.-+.+++.++ .+.....|+-+.... .-+|..|+.+.|++
T Consensus 13 ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~--~~~~~~e~a~~i~~ 66 (95)
T TIGR00253 13 AHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATE--DREDKTLIAEALVK 66 (95)
T ss_pred hCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCC--ChhHHHHHHHHHHH
Confidence 345699999999999999999887 455555554332211 13466777777764
No 198
>PRK08862 short chain dehydrogenase; Provisional
Probab=43.12 E-value=1.3e+02 Score=24.10 Aligned_cols=33 Identities=3% Similarity=0.048 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGS 45 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~ 45 (189)
+++.|.|+++ -..+++++.|+++|+.|+.-+..
T Consensus 6 k~~lVtGas~--------GIG~aia~~la~~G~~V~~~~r~ 38 (227)
T PRK08862 6 SIILITSAGS--------VLGRTISCHFARLGATLILCDQD 38 (227)
T ss_pred eEEEEECCcc--------HHHHHHHHHHHHCCCEEEEEcCC
Confidence 4555555553 22445666666677776554433
No 199
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=42.97 E-value=58 Score=26.46 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHhcCeeEEecC--CcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHH
Q 045940 96 EMARRADAFIALPG--GYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNAR 173 (189)
Q Consensus 96 ~m~~~sda~I~lpG--G~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~e 173 (189)
.+...||++|.-.. |+|+- +.|++. .++|++..+..+ .. +++++ ...+.-.+|++
T Consensus 264 ~~~~~adi~v~ps~~e~~~~~--~~Ea~a------~g~PvI~~~~~~-~~---e~~~~-----------~g~~~~~~~~~ 320 (365)
T cd03807 264 ALLNALDVFVLSSLSEGFPNV--LLEAMA------CGLPVVATDVGD-NA---ELVGD-----------TGFLVPPGDPE 320 (365)
T ss_pred HHHHhCCEEEeCCccccCCcH--HHHHHh------cCCCEEEcCCCC-hH---HHhhc-----------CCEEeCCCCHH
Confidence 45688998775322 22322 566663 789999876553 22 22221 12334446788
Q ss_pred HHHHHhhcCCC
Q 045940 174 DLLQGMEVPNL 184 (189)
Q Consensus 174 e~~~~l~~~~~ 184 (189)
++.+.|.+...
T Consensus 321 ~l~~~i~~l~~ 331 (365)
T cd03807 321 ALAEAIEALLA 331 (365)
T ss_pred HHHHHHHHHHh
Confidence 88888776544
No 200
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=42.68 E-value=1.3e+02 Score=22.61 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=35.2
Q ss_pred eEEEEEcCCC--CCCChHHHHHHHHHHHHHHHCCCeEEE-----cCCCCChhHHHHH
Q 045940 5 KRVCVFCGSN--SGNRKIFSDAALDLATQLVERKINLVY-----GGGSVGLMGLVSQ 54 (189)
Q Consensus 5 ~~I~V~g~s~--~~~~~~~~~~A~~lg~~la~~g~~lv~-----GGg~~GlM~a~a~ 54 (189)
+.|.|.-.+. ...+....+..+++++.|.++|+.+-. +.+. |+...++.
T Consensus 69 r~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 69 REVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred ceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 4555555555 333477888999999999999998544 5666 88887654
No 201
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=42.56 E-value=72 Score=27.78 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=16.4
Q ss_pred eEEecCCHHHHHHHHHHhcCeeEEecC
Q 045940 83 DVLIVSDMHERKAEMARRADAFIALPG 109 (189)
Q Consensus 83 ~~~~~~~~~~R~~~m~~~sda~I~lpG 109 (189)
+-++-+|+..-+---.-.||.+|+|-.
T Consensus 208 eAVIDKDlasalLA~~i~AD~liILTd 234 (312)
T COG0549 208 EAVIDKDLASALLAEQIDADLLIILTD 234 (312)
T ss_pred eEEEccHHHHHHHHHHhcCCEEEEEec
Confidence 445666774332222346899999986
No 202
>PRK09267 flavodoxin FldA; Validated
Probab=42.46 E-value=29 Score=26.67 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=18.1
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLV 33 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la 33 (189)
|++|.|+.+|..++.. +.|+.+++.|.
T Consensus 1 mmki~IiY~S~tGnT~---~vA~~Ia~~l~ 27 (169)
T PRK09267 1 MAKIGIFFGSDTGNTE---DIAKMIQKKLG 27 (169)
T ss_pred CCeEEEEEECCCChHH---HHHHHHHHHhC
Confidence 4678888888887554 44556666654
No 203
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=42.39 E-value=64 Score=26.27 Aligned_cols=41 Identities=12% Similarity=-0.046 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHH----CCCeEE-E--cCCC-C--ChhHHHHHHHHhcCC
Q 045940 21 FSDAALDLATQLVE----RKINLV-Y--GGGS-V--GLMGLVSQTIFDGGC 61 (189)
Q Consensus 21 ~~~~A~~lg~~la~----~g~~lv-~--GGg~-~--GlM~a~a~ga~~~gg 61 (189)
-+..|+.+|.+||+ .|+.-| . ||.. . |-..|+++||.++|=
T Consensus 78 N~~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~GL 128 (193)
T PRK08569 78 NTPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAGL 128 (193)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcCC
Confidence 35778888888886 455422 2 5443 2 889999999999774
No 204
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.18 E-value=1.2e+02 Score=25.47 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=27.2
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHH-----HHHHHHHcCC
Q 045940 108 PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLR-----FFDKGVEEGF 157 (189)
Q Consensus 108 pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~-----~l~~~~~~g~ 157 (189)
-.|. |++++++.+.-..-.....|++++. ||+++.. |++.+.+.|.
T Consensus 68 ~~G~-~~~~~~~~~~~~r~~~~~~p~vlm~---Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 68 AAGV-TLADVFELVREIREKDPTIPIVLMT---YYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred HcCC-CHHHHHHHHHHHHhcCCCCCEEEEe---cccHHhhcCHHHHHHHHHHcCC
Confidence 3443 4556666654433234568998874 7776554 6666666553
No 205
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=42.02 E-value=70 Score=25.90 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCeeEEec--CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEe
Q 045940 92 ERKAEMARRADAFIALP--GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISA 169 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lp--GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 169 (189)
+....+...||++|... .|+|+- +.|++. .++|++.-+..+. . +++++ .....+.-.
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~--~~Ea~~------~G~pvI~~~~~~~-~---~~~~~---------~~~g~~~~~ 328 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLV--LLEAMA------CGLPVVATDVGGI-P---EIITD---------GENGLLVPP 328 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChH--HHHHHh------cCCCEEEecCCCh-H---HHhcC---------CcceeEECC
Confidence 33455667899877553 344443 566663 7899988765432 2 22211 111234445
Q ss_pred CCHHHHHHHhhcCCCCC
Q 045940 170 KNARDLLQGMEVPNLLP 186 (189)
Q Consensus 170 ~~~ee~~~~l~~~~~~~ 186 (189)
+|++++.+.|.+....+
T Consensus 329 ~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 329 GDPEALAEAILRLLADP 345 (377)
T ss_pred CCHHHHHHHHHHHhcCc
Confidence 68998888887655443
No 206
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.02 E-value=64 Score=27.97 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=34.6
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC--CCc-----hHHHHHHHHHHHcCC
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD--GYY-----DSLLRFFDKGVEEGF 157 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~--g~~-----~~l~~~l~~~~~~g~ 157 (189)
.+|.+|++ ||=||+-..+..+. ...+||+=+|.+ ||. +++.+.++++.+..|
T Consensus 68 ~~Dlvi~i-GGDGTlL~aar~~~-----~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 68 SMKFAIVL-GGDGTVLSAARQLA-----PCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred CcCEEEEE-eCcHHHHHHHHHhc-----CCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc
Confidence 46765555 77899865554432 467899988764 676 566777777766554
No 207
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=41.93 E-value=54 Score=27.61 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
+|+|.+|......+.-...++.+.+.|.+.||.++.
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~ 37 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTV 37 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEE
Confidence 577776655555666789999999999999998543
No 208
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=41.75 E-value=45 Score=27.66 Aligned_cols=66 Identities=17% Similarity=0.311 Sum_probs=40.3
Q ss_pred HHHHHhcCeeEEecC--CcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCH
Q 045940 95 AEMARRADAFIALPG--GYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNA 172 (189)
Q Consensus 95 ~~m~~~sda~I~lpG--G~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 172 (189)
..+...||++|.-.. |+|. =++|+++ .++|++..+..+ .. +++++ ...+.-.+|+
T Consensus 257 ~~~~~~ad~~v~~s~~e~~~~--~~~Ea~a------~G~PvI~~~~~~-~~---e~i~~-----------~g~~~~~~~~ 313 (360)
T cd04951 257 AAYYNAADLFVLSSAWEGFGL--VVAEAMA------CELPVVATDAGG-VR---EVVGD-----------SGLIVPISDP 313 (360)
T ss_pred HHHHHhhceEEecccccCCCh--HHHHHHH------cCCCEEEecCCC-hh---hEecC-----------CceEeCCCCH
Confidence 345688999776543 2332 2667774 789999877543 21 21211 2334455788
Q ss_pred HHHHHHhhcCC
Q 045940 173 RDLLQGMEVPN 183 (189)
Q Consensus 173 ee~~~~l~~~~ 183 (189)
+++.+.|.+..
T Consensus 314 ~~~~~~i~~ll 324 (360)
T cd04951 314 EALANKIDEIL 324 (360)
T ss_pred HHHHHHHHHHH
Confidence 88888887754
No 209
>PRK07454 short chain dehydrogenase; Provisional
Probab=41.71 E-value=1.7e+02 Score=23.11 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 045940 2 GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGS 45 (189)
Q Consensus 2 ~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~ 45 (189)
++++++.|.|+++ ...+.+.+.|+++|+.|+.-..+
T Consensus 4 ~~~k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 4 NSMPRALITGASS--------GIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678888888764 34456677777788876654443
No 210
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=41.55 E-value=41 Score=27.59 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHhcCeeEEecC--CcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCH
Q 045940 95 AEMARRADAFIALPG--GYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNA 172 (189)
Q Consensus 95 ~~m~~~sda~I~lpG--G~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 172 (189)
......||++|.-.. |+|.- ++|+++ .++|++..+..+.. +.++ ......+.-.+|.
T Consensus 261 ~~~~~~~d~~l~~s~~e~~~~~--~lEa~a------~g~PvI~~~~~~~~----~~i~---------~~~~g~~~~~~~~ 319 (364)
T cd03814 261 AAAYASADVFVFPSRTETFGLV--VLEAMA------SGLPVVAPDAGGPA----DIVT---------DGENGLLVEPGDA 319 (364)
T ss_pred HHHHHhCCEEEECcccccCCcH--HHHHHH------cCCCEEEcCCCCch----hhhc---------CCcceEEcCCCCH
Confidence 356678998775322 23322 566664 79999987765421 2221 1122333445567
Q ss_pred HHHHHHhhcCCC
Q 045940 173 RDLLQGMEVPNL 184 (189)
Q Consensus 173 ee~~~~l~~~~~ 184 (189)
+++.+.|.+...
T Consensus 320 ~~l~~~i~~l~~ 331 (364)
T cd03814 320 EAFAAALAALLA 331 (364)
T ss_pred HHHHHHHHHHHc
Confidence 777777765443
No 211
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=41.39 E-value=21 Score=32.04 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=17.7
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
.||.|||+.|++.|++ |.++|-+|+=|=
T Consensus 2 VVVvGgG~aG~~AAi~--AAr~G~~VlLiE 29 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIA--AARAGAKVLLIE 29 (428)
T ss_dssp EEEE--SHHHHHHHHH--HHHTTS-EEEE-
T ss_pred EEEECccHHHHHHHHH--HHHCCCEEEEEE
Confidence 4889999989887764 445677777763
No 212
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=41.15 E-value=1.8e+02 Score=23.45 Aligned_cols=113 Identities=15% Similarity=0.202 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCC--ce---EEecCCHHHH
Q 045940 19 KIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTV--GD---VLIVSDMHER 93 (189)
Q Consensus 19 ~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~--~~---~~~~~~~~~R 93 (189)
+...+.+..+.+.+.+.+...++|-|.++.+.. .-+.+-..+...-.|. +...-...+.. +. -.-.+..+.|
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~--~~a~~l~~~~~~~r~g-l~a~~l~~d~~~~ta~and~~~~~~f~~ 101 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQ--HFAASMINRFETERPS-LPAIALNTDNVVLTAIANDRLHDEVYAK 101 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHH--HHHHHHhccccccCCC-cceEEecCcHHHHHHHhccccHHHHHHH
Confidence 456677777778888888889998776554332 2222211100000110 00000000000 00 0011122333
Q ss_pred H-HHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEe
Q 045940 94 K-AEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLN 137 (189)
Q Consensus 94 ~-~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~ 137 (189)
. +-.....|.+|++.+ .|.-.++.++....+ ..+.|+|.+-
T Consensus 102 ql~~~~~~gDvli~iS~-SG~s~~v~~a~~~Ak--~~G~~vI~IT 143 (196)
T PRK10886 102 QVRALGHAGDVLLAIST-RGNSRDIVKAVEAAV--TRDMTIVALT 143 (196)
T ss_pred HHHHcCCCCCEEEEEeC-CCCCHHHHHHHHHHH--HCCCEEEEEe
Confidence 2 233455788888876 444455666665544 4678888764
No 213
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=40.93 E-value=38 Score=28.58 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 94 KAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 94 ~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
-+++.+.+|.-|++-+|+||.++..+++. .+.--+|+|+
T Consensus 167 l~~i~~~~~vPvIvDAGiG~pSdaa~AME------lG~daVLvNT 205 (247)
T PF05690_consen 167 LRIIIERADVPVIVDAGIGTPSDAAQAME------LGADAVLVNT 205 (247)
T ss_dssp HHHHHHHGSSSBEEES---SHHHHHHHHH------TT-SEEEESH
T ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHH------cCCceeehhh
Confidence 45677888999999999999999999986 4566778886
No 214
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=40.80 E-value=1.2e+02 Score=24.19 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=43.2
Q ss_pred hcCeeEEecCCcchHHHHHHHHH-------HHhcCCCCCcEEEEeC---CC-------CchHHH--------HHHHHHHH
Q 045940 100 RADAFIALPGGYGTMEELLEMIT-------WSQLGIHDKPVGVLNV---DG-------YYDSLL--------RFFDKGVE 154 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~-------~~~~~~~~kPiill~~---~g-------~~~~l~--------~~l~~~~~ 154 (189)
.+|++|+.|-...|+.-+..-++ ..+....++|++++=. .| ....+. +-++++
T Consensus 78 ~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~L-- 155 (174)
T TIGR02699 78 KYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEKL-- 155 (174)
T ss_pred ccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHHH--
Confidence 47999999999999988765332 1111235789987733 11 011111 111221
Q ss_pred cCCCCccccCcEEEeCCHHHHHHHh
Q 045940 155 EGFIKSSARNIVISAKNARDLLQGM 179 (189)
Q Consensus 155 ~g~i~~~~~~~i~~~~~~ee~~~~l 179 (189)
+..+-+.+.++|+|+.+.|
T Consensus 156 ------~~~~gv~v~~~~~~~~~~~ 174 (174)
T TIGR02699 156 ------AQMEGIEILTKPEDIYKIF 174 (174)
T ss_pred ------hhCCCeEEECCHHHHHhhC
Confidence 1335689999999998754
No 215
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=40.39 E-value=3e+02 Score=25.43 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCC-CeEEEcCCC--CChhHHHHHHHHhcCCeEEEEecCccccccccCCCC-ceEEecCCHHHHHHHHHH
Q 045940 24 AALDLATQLVERK-INLVYGGGS--VGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTV-GDVLIVSDMHERKAEMAR 99 (189)
Q Consensus 24 ~A~~lg~~la~~g-~~lv~GGg~--~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~-~~~~~~~~~~~R~~~m~~ 99 (189)
...++.+.|.+.. -.|+.|+|- .+.-+++.+=|-..|-.|+.- +...-.....|+.+ ..+-.. .-...+. .++
T Consensus 193 ~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt-~~~kg~~~~~hp~~~G~~g~~-~~~~~~~-~l~ 269 (557)
T PRK08199 193 DLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACA-FRRQDLFDNRHPNYAGDLGLG-INPALAA-RIR 269 (557)
T ss_pred HHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEc-CCcCCCCCCCChhhccCCcCc-CCHHHHH-HHH
Confidence 3455667776643 445656543 255566666555677777642 11100000112221 111111 1122333 347
Q ss_pred hcCeeEEecCCcch
Q 045940 100 RADAFIALPGGYGT 113 (189)
Q Consensus 100 ~sda~I~lpGG~GT 113 (189)
.+|.+|+++-.++.
T Consensus 270 ~aDlvl~lG~~~~~ 283 (557)
T PRK08199 270 EADLVLAVGTRLGE 283 (557)
T ss_pred hCCEEEEeCCCCcc
Confidence 89999999976544
No 216
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=40.27 E-value=1.5e+02 Score=29.30 Aligned_cols=162 Identities=16% Similarity=0.214 Sum_probs=88.9
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCe-------EE---EEecCccc
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCH-------VL---GVIPKALV 72 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~-------vi---Gv~p~~~~ 72 (189)
.++-|+++-|... .|...+.++.+.+.+.++++.+..=|.. - |. +.+-..+.|-+ -. +++|-.
T Consensus 497 ~iPg~aa~vGc~~--~p~~~e~~~~I~qef~~R~~iv~~tGcs-~-~~-~~~~~~e~g~~lye~~~~~~~~~~lv~~G-- 569 (784)
T TIGR00314 497 DIPGVIAAVGCSN--YPNGMKDVAEIAKEFLERNYIVVTTGCH-A-MD-IGMYKDEEGKTLYEKYPGNFDAGGLVNTG-- 569 (784)
T ss_pred CCCCeeEEecCCC--CcccHHHHHHHHHHHHhCCeEEEecCcc-H-HH-HHHHHHHcCCChHHhcCccccccceEecC--
Confidence 3444444444432 3444588999999999999987776655 2 43 33334444422 11 333311
Q ss_pred cccccCCCCceEEecCCH--------HHHH--HHHHHhcCeeEEecCCcchHH-HHHHHHHHHhcC--CCCCcEEEEeCC
Q 045940 73 PIEISGQTVGDVLIVSDM--------HERK--AEMARRADAFIALPGGYGTME-ELLEMITWSQLG--IHDKPVGVLNVD 139 (189)
Q Consensus 73 ~~e~~~~~~~~~~~~~~~--------~~R~--~~m~~~sda~I~lpGG~GTL~-El~~~~~~~~~~--~~~kPiill~~~ 139 (189)
.++..+.+.++ .-|| ...-+..|++|.--+|.|+.- ++.+.+...-.| ..+.|+|+ ++.
T Consensus 570 -------~~~~~~h~~~~a~~~Al~fAr~NIda~~~eilDyIv~rasgCG~alg~~s~~~~a~a~G~~~~G~Pvi~-gph 641 (784)
T TIGR00314 570 -------SCVANAHIAGAAIKIANIFAKRPLRGNYAEIADYILNRVGAVGVAWGAYSQKAASIATGFNRLGIPVVV-GPH 641 (784)
T ss_pred -------chhhHHHHHHHHHHHHHHHhhcccccchHhhhhheeeccChHhhccccccHHHHHHHhhHHhcCCCeEE-CCc
Confidence 11111111111 1111 011123899999999988765 777777777777 47899964 444
Q ss_pred C-CchHHHHHHHH------------HHHcC-CCCccccCcEEEeCCHHHHHHHhhc
Q 045940 140 G-YYDSLLRFFDK------------GVEEG-FIKSSARNIVISAKNARDLLQGMEV 181 (189)
Q Consensus 140 g-~~~~l~~~l~~------------~~~~g-~i~~~~~~~i~~~~~~ee~~~~l~~ 181 (189)
| -|.. .+|.+ -..+. .+.+...+.++.++|-||++-.+.+
T Consensus 642 ~~kyrr--~~~~~~~~~~~w~~~d~~~g~~~~~~p~p~~l~~~~e~~~ea~~~~ak 695 (784)
T TIGR00314 642 GSKYRR--AYLGRPWKKEKWKVYDIKTGEKVFIEPAPEHLLVAAETKEEAIVMIAK 695 (784)
T ss_pred hHHHHH--HHhcCCcccccCeEEecCCCCcccCCCCchHHeehhhhHHHHHHHHHH
Confidence 3 1111 11111 01111 3455556778899999999988876
No 217
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.16 E-value=36 Score=29.59 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=24.2
Q ss_pred CCCeEEEcCCCCChhHHHHHHHHhcCCeE
Q 045940 35 RKINLVYGGGSVGLMGLVSQTIFDGGCHV 63 (189)
Q Consensus 35 ~g~~lv~GGg~~GlM~a~a~ga~~~gg~v 63 (189)
.+..|+||||. |+=++.+....+.|.++
T Consensus 38 g~~vLITGgg~-GlGr~ialefa~rg~~~ 65 (300)
T KOG1201|consen 38 GEIVLITGGGS-GLGRLIALEFAKRGAKL 65 (300)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHhCCeE
Confidence 47889999998 99999999999888854
No 218
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=40.12 E-value=1e+02 Score=24.55 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHH-CCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCc--cccc--cccCCCCc--eEE---ecCCH
Q 045940 21 FSDAALDLATQLVE-RKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKA--LVPI--EISGQTVG--DVL---IVSDM 90 (189)
Q Consensus 21 ~~~~A~~lg~~la~-~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~--~~~~--e~~~~~~~--~~~---~~~~~ 90 (189)
+.+.=.++-+.+.. .+..|-||||. +|..-++.++...|.||=.--+. +..+ .-..-|+. .-. +.+-|
T Consensus 57 FR~~E~~vl~~l~~~~~~ViaTGGG~--v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~ 134 (172)
T COG0703 57 FRRLETEVLKELLEEDNAVIATGGGA--VLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELL 134 (172)
T ss_pred HHHHHHHHHHHHhhcCCeEEECCCcc--ccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHH
Confidence 43433444444444 45777788776 78888888999888777662111 1110 00111111 111 22346
Q ss_pred HHHHHHHHHhcCeeEEecCCc
Q 045940 91 HERKAEMARRADAFIALPGGY 111 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpGG~ 111 (189)
.+|+.+..+.||.++-.....
T Consensus 135 ~~R~~~Y~e~a~~~~~~~~~~ 155 (172)
T COG0703 135 EERQPLYREVADFIIDTDDRS 155 (172)
T ss_pred HHHHHHHHHhCcEEecCCCCc
Confidence 889988877777766655554
No 219
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=40.01 E-value=2.6e+02 Score=24.61 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=41.0
Q ss_pred cCeeE-EecCCcchHHHHHHHHHHHhcC-CCCCcEEEEeCCC-CchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHH
Q 045940 101 ADAFI-ALPGGYGTMEELLEMITWSQLG-IHDKPVGVLNVDG-YYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQ 177 (189)
Q Consensus 101 sda~I-~lpGG~GTL~El~~~~~~~~~~-~~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~ 177 (189)
-|+++ .++|++...+++.+.+.-..-. .++||+++. ..| ..+..... +.+.|+ .+.+++||+++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~~~---L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGKKI---LAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHHH---HHHCCC-------CceecCCHHHHHH
Confidence 35544 4667777777777776543322 268999544 334 22222222 222221 2678999999999
Q ss_pred Hhhc
Q 045940 178 GMEV 181 (189)
Q Consensus 178 ~l~~ 181 (189)
.+.+
T Consensus 380 al~~ 383 (388)
T PRK00696 380 KAVE 383 (388)
T ss_pred HHHH
Confidence 8865
No 220
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=39.92 E-value=1.1e+02 Score=22.50 Aligned_cols=40 Identities=23% Similarity=0.418 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH----CCCe-EEE--cCC-CCChhHHHHHHHHhcCC
Q 045940 22 SDAALDLATQLVE----RKIN-LVY--GGG-SVGLMGLVSQTIFDGGC 61 (189)
Q Consensus 22 ~~~A~~lg~~la~----~g~~-lv~--GGg-~~GlM~a~a~ga~~~gg 61 (189)
.+.|+.+|+.||+ .|+. +++ ||. .-|-+.|+++||.++|=
T Consensus 60 ~~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~GL 107 (109)
T CHL00139 60 CDASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAGL 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 4578888888886 4654 333 332 25899999999999873
No 221
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.64 E-value=1.1e+02 Score=26.19 Aligned_cols=109 Identities=18% Similarity=0.353 Sum_probs=55.7
Q ss_pred eEEEcCCCCChhH--HHHHHHHhcCCeEEEE-ecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcchH
Q 045940 38 NLVYGGGSVGLMG--LVSQTIFDGGCHVLGV-IPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTM 114 (189)
Q Consensus 38 ~lv~GGg~~GlM~--a~a~ga~~~gg~viGv-~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL 114 (189)
.-+++|.+ ++-. .+.++..++|...+=+ +|-+ + .+.++-..++..... |-+|+ |+
T Consensus 21 ~yit~GdP-~~e~s~e~i~~L~~~GaD~iELGvPfS--------D-----PvADGP~Iq~A~~rA-------L~~g~-t~ 78 (265)
T COG0159 21 PYVTAGDP-DLETSLEIIKTLVEAGADILELGVPFS--------D-----PVADGPTIQAAHLRA-------LAAGV-TL 78 (265)
T ss_pred EEEeCCCC-CHHHHHHHHHHHHhCCCCEEEecCCCC--------C-----cCccCHHHHHHHHHH-------HHCCC-CH
Confidence 35677776 6543 3455556677665444 2321 1 123333333333332 23333 55
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCCchH-----HHHHHHHHHHcCCCCccccCcEEEeCCHHHHHH
Q 045940 115 EELLEMITWSQLGIHDKPVGVLNVDGYYDS-----LLRFFDKGVEEGFIKSSARNIVISAKNARDLLQ 177 (189)
Q Consensus 115 ~El~~~~~~~~~~~~~kPiill~~~g~~~~-----l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~ 177 (189)
+..++......-.....|++|+. ||++ +..|++...+.|. +-+.+.|=|-|--+
T Consensus 79 ~~~lel~~~~r~~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~ 137 (265)
T COG0159 79 EDTLELVEEIRAKGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESD 137 (265)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHH
Confidence 55666654333223567999995 6665 4445666555543 44555555544443
No 222
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=39.45 E-value=75 Score=22.91 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=33.3
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHH-HHHcCCCCccccCcEEEeCCHHHHHHHhhc
Q 045940 128 IHDKPVGVLNVDGYYDSLLRFFDK-GVEEGFIKSSARNIVISAKNARDLLQGMEV 181 (189)
Q Consensus 128 ~~~kPiill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 181 (189)
.+=+|++.++.+|.-+.+++.++. +.....|+-+... ..-+|..|+.+.|++
T Consensus 16 h~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~--~~~~~~~e~~~~i~~ 68 (97)
T PRK10343 16 HPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIAT--EDRETKTLIVEAIVR 68 (97)
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecC--CChhHHHHHHHHHHH
Confidence 456999999999999999998874 4444444433211 122345666666654
No 223
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=39.39 E-value=1.6e+02 Score=25.07 Aligned_cols=60 Identities=25% Similarity=0.254 Sum_probs=39.3
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCc
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKA 70 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~ 70 (189)
+.+++-|-|.|+ + ..+++++.||++|+.|+-=+...=-+++.++.-.+..|..+=++|-.
T Consensus 5 ~~~~~lITGASs-G-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 5 KGKTALITGASS-G-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred CCcEEEEECCCc-h-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECc
Confidence 344555555553 3 34478888999999999888885566666666555555555666643
No 224
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=39.24 E-value=1.1e+02 Score=26.84 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=36.7
Q ss_pred EEEcCCCCCC--ChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHHh---c--CCeEEEE
Q 045940 8 CVFCGSNSGN--RKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIFD---G--GCHVLGV 66 (189)
Q Consensus 8 ~V~g~s~~~~--~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~~---~--gg~viGv 66 (189)
++.|+|+... +++.+ .++.+.|-++++. |++=||. |-|..+.+=+.. . +-.+|||
T Consensus 65 s~LgtsR~~~~~~~~~~---~~~~~~l~~~~I~~Lv~IGGd-~s~~~a~~L~e~~~~~~~~i~vigi 127 (338)
T cd00363 65 TIIGSARCKEFRTEEGR---AKAAENLKKHGIDALVVIGGD-GSYTGADLLTEEWPSKYQGFNVIGL 127 (338)
T ss_pred eecccCCCCccCCHHHH---HHHHHHHHHhCCCEEEEeCCH-HHHHHHHHHHHHHHhcCCCccEEEe
Confidence 3667887654 33333 3666777777776 6666777 999888775543 1 5678888
No 225
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=39.20 E-value=78 Score=22.91 Aligned_cols=14 Identities=7% Similarity=0.359 Sum_probs=6.6
Q ss_pred HHHHHHhcCCeEEE
Q 045940 52 VSQTIFDGGCHVLG 65 (189)
Q Consensus 52 ~a~ga~~~gg~viG 65 (189)
+.+-..+.|.++++
T Consensus 102 ~~~~l~~~g~~~v~ 115 (140)
T TIGR01753 102 WEERLKEAGATIIA 115 (140)
T ss_pred HHHHHHHCCCEEec
Confidence 33333345666554
No 226
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=39.02 E-value=43 Score=24.95 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=20.4
Q ss_pred cCeeEEecC--CcchHH-HHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 101 ADAFIALPG--GYGTME-ELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 101 sda~I~lpG--G~GTL~-El~~~~~~~~~~~~~kPiill~~~ 139 (189)
+|.+|+-.. +.|.+. ++..-+.. +...+|.+.+++..
T Consensus 51 ~d~iilgs~t~~~g~~p~~~~~fl~~--l~~~~k~~avfgtg 90 (140)
T TIGR01754 51 YDLVFLGTWTWERGRTPDEMKDFIAE--LGYKPSNVAIFGTG 90 (140)
T ss_pred CCEEEEEcCeeCCCcCCHHHHHHHHH--hcccCCEEEEEEcC
Confidence 566555443 456554 44444433 22356888888764
No 227
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=39.01 E-value=71 Score=27.54 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=25.5
Q ss_pred HhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 99 RRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 99 ~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
+..|+||++-| .-||+|....+.+.- ...+|||+|.+.
T Consensus 71 ~~~~GvVVtHG-TDTme~tA~~Ls~~l-~~l~kPVVlTGa 108 (313)
T PF00710_consen 71 DDYDGVVVTHG-TDTMEETAFFLSLLL-DNLDKPVVLTGA 108 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHHE-ES-SSEEEEE--
T ss_pred HhcCeEEEecC-chHHHHHHHHHHHHh-cCCCCCEEEeCC
Confidence 34789888875 899999988876543 223799999864
No 228
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=38.84 E-value=1.1e+02 Score=23.28 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGG 43 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GG 43 (189)
.+++|.++|..+.-++| .|+.+.+.+++.++.+-+.|
T Consensus 1 ~~~kVLFVC~gN~cRSp----mAE~l~~~~~~~~~~v~SAG 37 (139)
T COG0394 1 MMMKVLFVCTGNICRSP----MAEALLRHLAPDNVEVDSAG 37 (139)
T ss_pred CCceEEEEcCCCcccCH----HHHHHHHHhccCCeEEECCc
Confidence 36789999988776554 67788888888778777766
No 229
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=38.83 E-value=1e+02 Score=25.45 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
||+|+|+|-.+.+ ..|++.+++.||.++.|+.. -.++....+.+.+..++|.
T Consensus 1 m~~~~i~GtGniG---------~alA~~~a~ag~eV~igs~r--~~~~~~a~a~~l~~~i~~~ 52 (211)
T COG2085 1 MMIIAIIGTGNIG---------SALALRLAKAGHEVIIGSSR--GPKALAAAAAALGPLITGG 52 (211)
T ss_pred CcEEEEeccChHH---------HHHHHHHHhCCCeEEEecCC--ChhHHHHHHHhhccccccC
Confidence 6788888876543 37888999999999999755 4444444455545444443
No 230
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.58 E-value=78 Score=27.23 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=32.6
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC--CCch-----HHHHHHHHHHHcCC
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD--GYYD-----SLLRFFDKGVEEGF 157 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~--g~~~-----~l~~~l~~~~~~g~ 157 (189)
.| +|+.-||=||+-+.+..+. ..++||+=+|.. ||.. .+.+.++.+.+..|
T Consensus 63 ~d-~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 63 CD-LVIVVGGDGSLLGAARALA-----RHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHY 120 (295)
T ss_pred CC-EEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCc
Confidence 44 4566688999988765542 357899878763 5654 44555666554443
No 231
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=38.53 E-value=1.2e+02 Score=22.47 Aligned_cols=71 Identities=18% Similarity=0.416 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCeeEEecC--CcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEE
Q 045940 91 HERKAEMARRADAFIALPG--GYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVIS 168 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpG--G~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 168 (189)
.+....+...||++|...- |+|+ =+.|++. .++|++.-+.. .+..+ +.++ ....+.-
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~------~g~pvI~~~~~-~~~e~-------~~~~-----~~g~~~~ 141 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGL--SLLEAMA------CGCPVIASDIG-GNNEI-------INDG-----VNGFLFD 141 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHH------TT-EEEEESST-HHHHH-------SGTT-----TSEEEES
T ss_pred ccccccccccceecccccccccccc--ccccccc------cccceeecccc-CCcee-------eccc-----cceEEeC
Confidence 4555677788999988753 4444 3566664 78999988744 22221 1111 1223344
Q ss_pred eCCHHHHHHHhhcC
Q 045940 169 AKNARDLLQGMEVP 182 (189)
Q Consensus 169 ~~~~ee~~~~l~~~ 182 (189)
..|++++.+.|.+.
T Consensus 142 ~~~~~~l~~~i~~~ 155 (172)
T PF00534_consen 142 PNDIEELADAIEKL 155 (172)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 55778888888654
No 232
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=38.51 E-value=26 Score=23.70 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHhhcC
Q 045940 142 YDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEVP 182 (189)
Q Consensus 142 ~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 182 (189)
|+.+...|+.+.+.|++.. ....+.+++.-.++++.++++
T Consensus 33 ~~~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeC-CCCEEEECccHHHHHHHHHHH
Confidence 6778888999999999954 668889999999999988754
No 233
>PRK06703 flavodoxin; Provisional
Probab=38.38 E-value=83 Score=23.57 Aligned_cols=14 Identities=7% Similarity=0.394 Sum_probs=7.2
Q ss_pred HHHHHHhcCCeEEE
Q 045940 52 VSQTIFDGGCHVLG 65 (189)
Q Consensus 52 ~a~ga~~~gg~viG 65 (189)
..+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 44443445666555
No 234
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=38.31 E-value=49 Score=27.69 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVE 34 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~ 34 (189)
++|+|||||=+..+..+...|+++-+.+.-
T Consensus 22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~l 51 (243)
T PRK06973 22 RRIGILGGTFDPIHDGHLALARRFADVLDL 51 (243)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 579999999988888889999988887754
No 235
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=38.26 E-value=49 Score=29.52 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=28.4
Q ss_pred HhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 99 RRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 99 ~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
+..|++||+-| .-||+|....+.++-- ..|||++.+.
T Consensus 120 ~~~~G~VV~HG-TDTLe~tAffls~~~~--t~KPIVitGa 156 (368)
T KOG0503|consen 120 KSYDGIVVTHG-TDTLEETAFFLSFTIN--TLKPIVITGA 156 (368)
T ss_pred cccCcEEEEcC-cchHHHHHHHHHHHHh--cCCcEEEecc
Confidence 34789999886 8999999988875542 2399999865
No 236
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=38.25 E-value=1.1e+02 Score=26.00 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=40.3
Q ss_pred HHHHHhcCeeEEec--CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCH
Q 045940 95 AEMARRADAFIALP--GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNA 172 (189)
Q Consensus 95 ~~m~~~sda~I~lp--GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 172 (189)
..+...||+++..+ -|+|.. +.|+++ .++|++..+..|. .++ +. .+ ..-+.+-.|+
T Consensus 294 ~~~l~~ad~~l~~s~~E~~g~~--~lEAma------~G~PvI~s~~~~~-~e~---i~----~~------~~g~~~~~~~ 351 (392)
T cd03805 294 ELLLSSARALLYTPSNEHFGIV--PLEAMY------AGKPVIACNSGGP-LET---VV----DG------ETGFLCEPTP 351 (392)
T ss_pred HHHHhhCeEEEECCCcCCCCch--HHHHHH------cCCCEEEECCCCc-HHH---hc----cC------CceEEeCCCH
Confidence 45678899988643 334443 467764 7899999886542 222 21 11 1223344578
Q ss_pred HHHHHHhhcCCCC
Q 045940 173 RDLLQGMEVPNLL 185 (189)
Q Consensus 173 ee~~~~l~~~~~~ 185 (189)
+++.+.|.+....
T Consensus 352 ~~~a~~i~~l~~~ 364 (392)
T cd03805 352 EEFAEAMLKLAND 364 (392)
T ss_pred HHHHHHHHHHHhC
Confidence 8887777654433
No 237
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=38.19 E-value=63 Score=26.03 Aligned_cols=33 Identities=3% Similarity=-0.011 Sum_probs=17.5
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 7 VCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 7 I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
|+|+-.+. .++-+.+....+-+.+.++|+.++.
T Consensus 2 igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~ 34 (275)
T cd06320 2 YGVVLKTL--SNEFWRSLKEGYENEAKKLGVSVDI 34 (275)
T ss_pred eeEEEecC--CCHHHHHHHHHHHHHHHHhCCeEEE
Confidence 45555432 2444455555566666666666543
No 238
>PRK06194 hypothetical protein; Provisional
Probab=38.19 E-value=2e+02 Score=23.46 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGG 44 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg 44 (189)
++|-|.|+++. ..+++.+.|+++|+.|+.-+.
T Consensus 7 k~vlVtGasgg--------IG~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 7 KVAVITGAASG--------FGLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CEEEEeCCccH--------HHHHHHHHHHHCCCEEEEEeC
Confidence 56777777642 233566667778887664443
No 239
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=38.12 E-value=79 Score=25.60 Aligned_cols=122 Identities=21% Similarity=0.212 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHCCCeEEE-cCCCCChhHHHHHHHHhcCCeEEEEecCc--cc--cccccCCCCceEEecCC-HHHHHHHH
Q 045940 24 AALDLATQLVERKINLVY-GGGSVGLMGLVSQTIFDGGCHVLGVIPKA--LV--PIEISGQTVGDVLIVSD-MHERKAEM 97 (189)
Q Consensus 24 ~A~~lg~~la~~g~~lv~-GGg~~GlM~a~a~ga~~~gg~viGv~p~~--~~--~~e~~~~~~~~~~~~~~-~~~R~~~m 97 (189)
+|-.|+++=-+.|=.++- |.|. |-+..-.- ..-..+++++|=-+. .. .+......+..+.+..+ -++ .+
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~---~L 97 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE---AL 97 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH---hh
Confidence 344445444445555554 5555 77654443 344578999992110 00 00011112333333322 222 22
Q ss_pred HHhcCe-eEEecCCcchHHHHHHHHHHHhcCCCCCc--EEEEeCCCCchHHHHHHHHHHHcCC
Q 045940 98 ARRADA-FIALPGGYGTMEELLEMITWSQLGIHDKP--VGVLNVDGYYDSLLRFFDKGVEEGF 157 (189)
Q Consensus 98 ~~~sda-~I~lpGG~GTL~El~~~~~~~~~~~~~kP--iill~~~g~~~~l~~~l~~~~~~g~ 157 (189)
-..++. .|+++|| |+++|+++++. .. =|| -++.|.- --+.+...++.+.+.|+
T Consensus 98 ~~~~~~daiFIGGg-~~i~~ile~~~-~~----l~~ggrlV~nai-tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 98 PDLPSPDAIFIGGG-GNIEEILEAAW-ER----LKPGGRLVANAI-TLETLAKALEALEQLGG 153 (187)
T ss_pred cCCCCCCEEEECCC-CCHHHHHHHHH-HH----cCcCCeEEEEee-cHHHHHHHHHHHHHcCC
Confidence 233322 4566777 99999999863 22 234 3455532 12334445566666665
No 240
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=38.04 E-value=42 Score=28.23 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGS 45 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~ 45 (189)
+|+|+||......+.=...++.+-+.|.+.||.++.-...
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~ 40 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDID 40 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeec
Confidence 4666666554434434778999999999999997654433
No 241
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.84 E-value=2.2e+02 Score=24.49 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE------------------------------------EcCCCCCh
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV------------------------------------YGGGSVGL 48 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv------------------------------------~GGg~~Gl 48 (189)
|+|+|+.-.. .+...+.+.++.++|.++|+.++ +=||. |.
T Consensus 1 m~igii~~~~---~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD-GT 76 (292)
T PRK01911 1 MKIAIFGQTY---QESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGD-GT 76 (292)
T ss_pred CEEEEEeCCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCc-HH
Confidence 4578886543 35556667777776655443333 22345 77
Q ss_pred hHHHHHHHHhcCCeEEEEe
Q 045940 49 MGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 49 M~a~a~ga~~~gg~viGv~ 67 (189)
|=-+++-+...+-.++||-
T Consensus 77 ~L~aa~~~~~~~~PilGIN 95 (292)
T PRK01911 77 FLRTATYVGNSNIPILGIN 95 (292)
T ss_pred HHHHHHHhcCCCCCEEEEe
Confidence 7666666666677888883
No 242
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.79 E-value=1.3e+02 Score=25.14 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe----------------EEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKIN----------------LVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~----------------lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
|+++|| .+ +.-.+.+.++-+.|.++|+. +++=||. |.|=.+++-. +-.++||-
T Consensus 1 m~~~~~--~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIF--YR----EEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEE--eC----ccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEEe
Confidence 466777 22 22447777888888776642 4444567 8776666654 77888884
No 243
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=37.59 E-value=1.2e+02 Score=22.50 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHH----CCCe-EEE--cCCC-CChhHHHHHHHHhcCC
Q 045940 22 SDAALDLATQLVE----RKIN-LVY--GGGS-VGLMGLVSQTIFDGGC 61 (189)
Q Consensus 22 ~~~A~~lg~~la~----~g~~-lv~--GGg~-~GlM~a~a~ga~~~gg 61 (189)
.+.|+.+|+.||+ .|+. +++ ||.. -|-+.|++++|.++|=
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl 112 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGL 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 6788888888887 4655 333 4332 5899999999999873
No 244
>PLN02271 serine hydroxymethyltransferase
Probab=37.46 E-value=90 Score=29.71 Aligned_cols=43 Identities=33% Similarity=0.419 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCC----------CChhHHHHHHHHhcCCeEE
Q 045940 22 SDAALDLATQLVERKINLVYGGGS----------VGLMGLVSQTIFDGGCHVL 64 (189)
Q Consensus 22 ~~~A~~lg~~la~~g~~lv~GGg~----------~GlM~a~a~ga~~~gg~vi 64 (189)
.+-|+.|++.|.++|+.||+||-. .|+.+..++-.++.-+.++
T Consensus 441 v~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~ 493 (586)
T PLN02271 441 KKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITL 493 (586)
T ss_pred HHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEe
Confidence 345778899999999999998732 3777888888887655443
No 245
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=37.44 E-value=57 Score=27.32 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
+|+|.+|+.......-.+.++.+-+.|.+.|+.++.
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~ 41 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP 41 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE
Confidence 677777665544444566889999999999999754
No 246
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=37.30 E-value=1.4e+02 Score=24.82 Aligned_cols=42 Identities=36% Similarity=0.426 Sum_probs=24.1
Q ss_pred HHHHhcCeeEEecCCcchHHHHHH--HHHHHh-cCCCCCcEEEEeCCCC
Q 045940 96 EMARRADAFIALPGGYGTMEELLE--MITWSQ-LGIHDKPVGVLNVDGY 141 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~--~~~~~~-~~~~~kPiill~~~g~ 141 (189)
-+...+|++++ +.||+.+-.. +....+ ...+++|+ ++|..+.
T Consensus 50 ~~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pv-VlDpv~~ 94 (263)
T PRK09355 50 EMAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPV-VLDPVGV 94 (263)
T ss_pred HHHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCE-EECCccc
Confidence 34578899998 5555544322 222222 23467896 5787764
No 247
>PRK08589 short chain dehydrogenase; Validated
Probab=37.15 E-value=2.2e+02 Score=23.17 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=23.1
Q ss_pred CCCC--eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 045940 1 MGKF--KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGS 45 (189)
Q Consensus 1 ~~~~--~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~ 45 (189)
|+++ +++-|.|+++ -..+++++.|+++|+.|+.-+..
T Consensus 1 m~~l~~k~vlItGas~--------gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 1 MKRLENKVAVITGAST--------GIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCCCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEeCc
Confidence 4444 4666666664 23456777777888887765443
No 248
>PRK07308 flavodoxin; Validated
Probab=37.10 E-value=48 Score=24.79 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=15.5
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKI 37 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~ 37 (189)
.|.|+.+|..++.. +.|+.+++.|.+.|+
T Consensus 3 ~~~IvY~S~tGnTe---~iA~~ia~~l~~~g~ 31 (146)
T PRK07308 3 LAKIVYASMTGNTE---EIADIVADKLRELGH 31 (146)
T ss_pred eEEEEEECCCchHH---HHHHHHHHHHHhCCC
Confidence 35555555655433 455566666655443
No 249
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=37.06 E-value=2.7e+02 Score=23.92 Aligned_cols=87 Identities=17% Similarity=0.298 Sum_probs=47.3
Q ss_pred CCCChHH-HHHHHHHHHHHHH----CCCeEEE---cCCC-CChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEE
Q 045940 15 SGNRKIF-SDAALDLATQLVE----RKINLVY---GGGS-VGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVL 85 (189)
Q Consensus 15 ~~~~~~~-~~~A~~lg~~la~----~g~~lv~---GGg~-~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~ 85 (189)
.+.+++. ++.|.+.-+.|-+ ++..+++ |||+ +|.=-.+++-+.+.+..+++|.|..+.. |- ..
T Consensus 60 aG~~~~~G~~~a~e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~-Eg-------~~ 131 (303)
T cd02191 60 AGANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSD-EG-------GI 131 (303)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCccc-CC-------cc
Confidence 3456544 4444444444432 4444554 3333 4777778889999999999997642211 10 11
Q ss_pred ecCCHHHHHHHHHHhcCeeEEecC
Q 045940 86 IVSDMHERKAEMARRADAFIALPG 109 (189)
Q Consensus 86 ~~~~~~~R~~~m~~~sda~I~lpG 109 (189)
....-...-..|.+.+|.+|+++=
T Consensus 132 ~~~NA~~~l~~L~~~~D~~iv~dN 155 (303)
T cd02191 132 RMLNAAEGFQTLVREVDNLMVIPN 155 (303)
T ss_pred chhhHHHHHHHHHHhCCEEEEEeh
Confidence 111223344456677777777763
No 250
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=37.01 E-value=1.2e+02 Score=24.76 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=41.2
Q ss_pred HHHHHHHhcCeeEEec--CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeC
Q 045940 93 RKAEMARRADAFIALP--GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAK 170 (189)
Q Consensus 93 R~~~m~~~sda~I~lp--GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 170 (189)
...-+...||++|.-. .|+|+- +.|+++ .++|++..+..| +.. ++.+ ..| +.+.+
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~--~~Eama------~G~PvI~~~~~~-~~~---~~~~--~~~---------~~~~~ 330 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIV--VAEALA------CGTPVVTTDKVP-WQE---LIEY--GCG---------WVVDD 330 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcH--HHHHHh------cCCCEEEcCCCC-HHH---Hhhc--Cce---------EEeCC
Confidence 3344567799887644 455654 677774 789999887653 222 2222 222 33445
Q ss_pred CHHHHHHHhhcCCCC
Q 045940 171 NARDLLQGMEVPNLL 185 (189)
Q Consensus 171 ~~ee~~~~l~~~~~~ 185 (189)
+++++.+.|.+....
T Consensus 331 ~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 DVDALAAALRRALEL 345 (375)
T ss_pred ChHHHHHHHHHHHhC
Confidence 567777777665433
No 251
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=36.95 E-value=47 Score=28.07 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=39.5
Q ss_pred HHHHHHhcCeeEEe--cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCC
Q 045940 94 KAEMARRADAFIAL--PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKN 171 (189)
Q Consensus 94 ~~~m~~~sda~I~l--pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 171 (189)
...+...||+++.- ..|+|.- ++|++. .++|++..+..| ..+++++ .....+.-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a------~G~Pvi~s~~~~----~~e~i~~---------~~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMA------CGLPVVATAVGG----PRDIVVD---------GVTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHh------cCCCEEECCCCC----HHHHccC---------CCCeEEeCCCC
Confidence 34456789998743 2445543 567764 789998876543 2222211 11122222357
Q ss_pred HHHHHHHhhcCCC
Q 045940 172 ARDLLQGMEVPNL 184 (189)
Q Consensus 172 ~ee~~~~l~~~~~ 184 (189)
++++.+.|.+...
T Consensus 355 ~~~l~~~i~~l~~ 367 (398)
T cd03800 355 PEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888776543
No 252
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.79 E-value=94 Score=26.65 Aligned_cols=52 Identities=29% Similarity=0.372 Sum_probs=32.3
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC--CCc-----hHHHHHHHHHHHcCC
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD--GYY-----DSLLRFFDKGVEEGF 157 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~--g~~-----~~l~~~l~~~~~~g~ 157 (189)
.+|.+|+ -||=||+--.+..+ ...++||+=+|.+ ||. +.+.+.++++.+..|
T Consensus 64 ~~Dlvi~-iGGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 64 ISDFLIS-LGGDGTLISLCRKA-----AEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEF 122 (287)
T ss_pred CCCEEEE-ECCCHHHHHHHHHh-----cCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCC
Confidence 4565555 57799974443332 2468999877764 576 566666777655443
No 253
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=36.42 E-value=77 Score=23.41 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|.|+|++... + .--...|..+++.||++|..++
T Consensus 1 k~i~v~s~~~-g--~G~t~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWSPKG-G--VGKTTLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEEESST-T--SSHHHHHHHHHHHHHHTTT-EE
T ss_pred CEEEEECCCC-C--CCHHHHHHHHHHHHHhcCCCeE
Confidence 4577776442 1 2234667788888888775543
No 254
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=36.39 E-value=46 Score=28.59 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=23.2
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcCCCCCc-EEEE
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLGIHDKP-VGVL 136 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~~~~kP-iill 136 (189)
..-.|+..||=||++|+...+. .++.| +.++
T Consensus 58 ~~D~via~GGDGTv~evingl~-----~~~~~~Lgil 89 (301)
T COG1597 58 GYDTVIAAGGDGTVNEVANGLA-----GTDDPPLGIL 89 (301)
T ss_pred CCCEEEEecCcchHHHHHHHHh-----cCCCCceEEe
Confidence 3446777899999999998875 45566 6666
No 255
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=36.39 E-value=1.1e+02 Score=25.21 Aligned_cols=70 Identities=11% Similarity=0.048 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeC
Q 045940 91 HERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAK 170 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 170 (189)
..+....++.+|.+|+++=. -++.-+..+.+.-..+.|++++|.+. .+ + +....-.+.+..
T Consensus 166 ~~~~~~~~~~aDlllvvGTS----l~V~pa~~l~~~~~~~~~~v~iN~~~--~~------------~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTS----LKVAPFASLPSRVPSEVPRVLINREP--VG------------H-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEECCC----CeeccHHHHHHHHhCCCcEEEEeCCC--CC------------C-CCCCCcCEEEeC
Confidence 45555667889999986432 22222222222223468999999752 11 0 001122367888
Q ss_pred CHHHHHHHh
Q 045940 171 NARDLLQGM 179 (189)
Q Consensus 171 ~~ee~~~~l 179 (189)
+.+|+++.|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 888888764
No 256
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=36.27 E-value=70 Score=26.90 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|+++++|+|+|... ....+++.++++|+.|+
T Consensus 1 ~~~~~~V~vIG~G~---------mG~~iA~~l~~~G~~V~ 31 (295)
T PLN02545 1 MAEIKKVGVVGAGQ---------MGSGIAQLAAAAGMDVW 31 (295)
T ss_pred CCCcCEEEEECCCH---------HHHHHHHHHHhcCCeEE
Confidence 77899999999863 34466677788888765
No 257
>PLN02591 tryptophan synthase
Probab=36.12 E-value=1.7e+02 Score=24.61 Aligned_cols=40 Identities=23% Similarity=0.491 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHH-----HHHHHHHcC
Q 045940 113 TMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLR-----FFDKGVEEG 156 (189)
Q Consensus 113 TL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~-----~l~~~~~~g 156 (189)
|++.+++.+.-.. ...+.|++++. ||+++.. |++.+.+.|
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm~---Y~N~i~~~G~~~F~~~~~~aG 106 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLFT---YYNPILKRGIDKFMATIKEAG 106 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEEe---cccHHHHhHHHHHHHHHHHcC
Confidence 5666777765433 23568998884 8886554 666666655
No 258
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.95 E-value=68 Score=26.10 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=24.1
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
++....|++|+.|......++....+. ..+.|+++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 444568999998865555555543332 35678888764
No 259
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=35.78 E-value=87 Score=28.07 Aligned_cols=75 Identities=13% Similarity=0.244 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCeeEEec--CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEe
Q 045940 92 ERKAEMARRADAFIALP--GGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISA 169 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lp--GG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 169 (189)
+....+...||++|.-. .++|.. ++|+++ .++|||..+..|. .++ +++- .......+.-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~--vlEAmA------~G~PVI~s~~gg~-~ei---v~~~------~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFV--VLEAMA------SGVPVVAARAGGI-PDI---IPPD------QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcH--HHHHHH------cCCCEEEcCCCCc-Hhh---hhcC------CCCCceEEeCC
Confidence 44455678899988543 244432 567774 7899998876653 222 2110 00112233334
Q ss_pred CCHHHHHHHhhcCCC
Q 045940 170 KNARDLLQGMEVPNL 184 (189)
Q Consensus 170 ~~~ee~~~~l~~~~~ 184 (189)
+|++++.+.|.+...
T Consensus 385 ~d~~~la~~i~~ll~ 399 (465)
T PLN02871 385 GDVDDCVEKLETLLA 399 (465)
T ss_pred CCHHHHHHHHHHHHh
Confidence 688888888776543
No 260
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=35.65 E-value=64 Score=25.75 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=29.0
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
.+.+..|++|+.|-....+.++.+.+. ..+.||++++..
T Consensus 51 ~i~~~~d~Iiv~~~~~~~~~~~l~~~~-----~~gIpvv~~d~~ 89 (257)
T PF13407_consen 51 AISQGVDGIIVSPVDPDSLAPFLEKAK-----AAGIPVVTVDSD 89 (257)
T ss_dssp HHHTTESEEEEESSSTTTTHHHHHHHH-----HTTSEEEEESST
T ss_pred HHHhcCCEEEecCCCHHHHHHHHHHHh-----hcCceEEEEecc
Confidence 445568999999988877777766654 357899998765
No 261
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.19 E-value=3.7e+02 Score=24.98 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHCC-CeEEEcCCCC--ChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHh
Q 045940 24 AALDLATQLVERK-INLVYGGGSV--GLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARR 100 (189)
Q Consensus 24 ~A~~lg~~la~~g-~~lv~GGg~~--GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~ 100 (189)
...++.+.|.+.. -.|+.|+|-. |..+++.+=|-..|-.|+-- +...--....|+.+.-.+=...-...+. .++.
T Consensus 195 ~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt-~~gkg~~~~~hp~~~G~~G~~~~~~~~~-~~~~ 272 (572)
T PRK08979 195 QIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVST-LMGLGAFPGTHKNSLGMLGMHGRYEANM-AMHN 272 (572)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEc-ccccccCCCCCcccccCCccCCCHHHHH-HHHh
Confidence 3445566665544 5566666652 77777777666677766622 1110000012222211110011133333 4578
Q ss_pred cCeeEEecCCcc
Q 045940 101 ADAFIALPGGYG 112 (189)
Q Consensus 101 sda~I~lpGG~G 112 (189)
||.+|+++-..+
T Consensus 273 aD~vl~vG~~~~ 284 (572)
T PRK08979 273 ADLIFGIGVRFD 284 (572)
T ss_pred CCEEEEEcCCCC
Confidence 999999886543
No 262
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=35.08 E-value=2.1e+02 Score=23.33 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCeeEEe---cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEE
Q 045940 91 HERKAEMARRADAFIAL---PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVI 167 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~l---pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~ 167 (189)
..........+|+++.. ..|+|.. ++|+++ .++|++..|.. -..+++. ....-.
T Consensus 234 ~~~~~~~~~~~d~~v~ps~~~E~~~~~--~lEAma------~G~PvI~~~~~-~~~e~i~--------------~~~~g~ 290 (335)
T cd03802 234 GAEKAELLGNARALLFPILWEEPFGLV--MIEAMA------CGTPVIAFRRG-AVPEVVE--------------DGVTGF 290 (335)
T ss_pred HHHHHHHHHhCcEEEeCCcccCCcchH--HHHHHh------cCCCEEEeCCC-Cchhhee--------------CCCcEE
Q ss_pred EeCCHHHHHHHhhc
Q 045940 168 SAKNARDLLQGMEV 181 (189)
Q Consensus 168 ~~~~~ee~~~~l~~ 181 (189)
++++++++.+.|.+
T Consensus 291 l~~~~~~l~~~l~~ 304 (335)
T cd03802 291 LVDSVEELAAAVAR 304 (335)
T ss_pred EeCCHHHHHHHHHH
No 263
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.92 E-value=2.5e+02 Score=23.78 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=37.7
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE----------EEcCCCCChhHHHHHHHHhc-CCeEEEEec
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINL----------VYGGGSVGLMGLVSQTIFDG-GCHVLGVIP 68 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~l----------v~GGg~~GlM~a~a~ga~~~-gg~viGv~p 68 (189)
|.+|+++.... +...+.+.++.++|.++|+.+ ++=||. |.|=.+++-+... .-.++||-.
T Consensus 2 ~~~i~iv~~~~----~~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGD-GT~L~a~~~~~~~~~~pilgIn~ 72 (264)
T PRK03501 2 RRNLFFFYKRD----KELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSIGGD-GTFLQAVRKTGFREDCLYAGIST 72 (264)
T ss_pred CcEEEEEECCC----HHHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEECCc-HHHHHHHHHhcccCCCeEEeEec
Confidence 45788886543 256677888888887776542 223456 8776666655433 445677743
No 264
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=34.88 E-value=68 Score=30.68 Aligned_cols=42 Identities=26% Similarity=0.456 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHH
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGL 51 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a 51 (189)
..|+|.||| |+.|.+.|..+.+.|.+.|.. |+.=|-+ +-|+.
T Consensus 547 a~i~viCss----D~~Y~~~a~~~~~al~~ag~~~v~lAG~p-~~~~~ 589 (619)
T TIGR00642 547 AQVAVLCSS----DKVYAQQGLEVAKALKAAGAKALYLAGAF-KEFGD 589 (619)
T ss_pred CCEEEEeCC----CcchHHHHHHHHHHHHhCCCCEEEEeCCC-cchhh
Confidence 358999998 567999999999999666654 3333344 54554
No 265
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=34.72 E-value=3.6e+02 Score=24.59 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=45.4
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcchHH-H
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTME-E 116 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~-E 116 (189)
.+|.|.|+.| ..+++-++..|.+|+.+-.+.....+.....+ + +.++. -.++.+|.+|...|-.++++ +
T Consensus 215 VlViG~G~IG--~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 215 VVVAGYGDVG--KGCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred EEEECCCHHH--HHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHHH
Confidence 5778887755 34666667778887776322111111111111 1 12342 23468999999887666665 3
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCC
Q 045940 117 LLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 117 l~~~~~~~~~~~~~kPiill~~~ 139 (189)
.+..+ ++-.+++|..
T Consensus 285 ~~~~m--------K~GailiNvG 299 (425)
T PRK05476 285 HMEAM--------KDGAILANIG 299 (425)
T ss_pred HHhcC--------CCCCEEEEcC
Confidence 43332 3445677765
No 266
>PRK08105 flavodoxin; Provisional
Probab=34.72 E-value=91 Score=23.73 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=15.3
Q ss_pred EEEcCCC------CChhHHHHHHHHhcCCeEEE
Q 045940 39 LVYGGGS------VGLMGLVSQTIFDGGCHVLG 65 (189)
Q Consensus 39 lv~GGg~------~GlM~a~a~ga~~~gg~viG 65 (189)
-|.|-|. ++.+..+.+-..+.|+..++
T Consensus 88 avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 88 GVIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred EEEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 4556665 34445555545556777666
No 267
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=34.60 E-value=1e+02 Score=23.71 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=12.9
Q ss_pred hHHHHHHHHhcCCeEEEEecC
Q 045940 49 MGLVSQTIFDGGCHVLGVIPK 69 (189)
Q Consensus 49 M~a~a~ga~~~gg~viGv~p~ 69 (189)
|+.+.+-..+.|.+++|-.+.
T Consensus 100 ~~~l~~~l~~~G~~~ig~~~~ 120 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFWPT 120 (167)
T ss_pred HHHHHHHHHHcCCeEEceecC
Confidence 555555555567777776553
No 268
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=34.59 E-value=78 Score=25.42 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=9.1
Q ss_pred ChHHHHHHHHHHHHHHHC
Q 045940 18 RKIFSDAALDLATQLVER 35 (189)
Q Consensus 18 ~~~~~~~A~~lg~~la~~ 35 (189)
++-+.+..+.+-+.+.+.
T Consensus 11 ~~~~~~~~~~i~~~~~~~ 28 (272)
T cd06300 11 NTWRAQMLDEFKAQAKEL 28 (272)
T ss_pred ChHHHHHHHHHHHHHHhh
Confidence 343444555555555555
No 269
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=34.36 E-value=2.6e+02 Score=22.81 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHCCCeEE--EcCCCCChhHHHHHHHHhcCCeEEEEecCccccccc---cCCCCceEEecCCHHHHHHHH
Q 045940 23 DAALDLATQLVERKINLV--YGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEI---SGQTVGDVLIVSDMHERKAEM 97 (189)
Q Consensus 23 ~~A~~lg~~la~~g~~lv--~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~---~~~~~~~~~~~~~~~~R~~~m 97 (189)
+.+.++++.|.+.|+.++ |=-.+ +..++..+-..+.+...+|.-. ....++ ..+--.+.++.+++.. ...-
T Consensus 20 e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAGT--Vl~~~~a~~a~~aGA~FivsP~~~~-~v~~ 95 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAGT--VLNPEQLRQAVDAGAQFIVSPGLTP-ELAK 95 (204)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEEe--CCCHHHHHHHHHcCCCEEECCCCCH-HHHH
Confidence 566777888888777643 22224 6666665555555556677622 111111 1111124555555522 1111
Q ss_pred HHhcCeeEEecCCcchHHHHHHHHH
Q 045940 98 ARRADAFIALPGGYGTMEELLEMIT 122 (189)
Q Consensus 98 ~~~sda~I~lpGG~GTL~El~~~~~ 122 (189)
......+..+| |.-|..|+..+|.
T Consensus 96 ~~~~~~i~~iP-G~~TptEi~~A~~ 119 (204)
T TIGR01182 96 HAQDHGIPIIP-GVATPSEIMLALE 119 (204)
T ss_pred HHHHcCCcEEC-CCCCHHHHHHHHH
Confidence 12223567777 6778888888884
No 270
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=34.33 E-value=91 Score=21.01 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=23.0
Q ss_pred CeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 045940 102 DAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDG 140 (189)
Q Consensus 102 da~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g 140 (189)
=-+|.|| +|++||..+.. .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 3588899 59999998874 455553 555666654
No 271
>PRK05920 aromatic acid decarboxylase; Validated
Probab=34.32 E-value=75 Score=25.94 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=47.3
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHh-------cCCCCCcEEEEeCCCCchHH--HHHHHHHHHcCCCC-ccccCcEEEe
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQ-------LGIHDKPVGVLNVDGYYDSL--LRFFDKGVEEGFIK-SSARNIVISA 169 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~-------~~~~~kPiill~~~g~~~~l--~~~l~~~~~~g~i~-~~~~~~i~~~ 169 (189)
.+|++|+.|-..+|+.-+..=++-.- .=..++|+++.=.+ .|..- .+-++.+.+.|..= +.....+.--
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~~-m~~~~~~~~nl~~L~~~G~~ii~P~~g~y~~p 171 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPRE-TPLSLIHLENMLKLAEAGAIILPAIPAFYHKP 171 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeCC-CCCCHHHHHHHHHHHHCCCEEeCCcccccCCC
Confidence 78999999999999987754322110 11257899988654 44432 23355666666422 1222334455
Q ss_pred CCHHHHHHHh
Q 045940 170 KNARDLLQGM 179 (189)
Q Consensus 170 ~~~ee~~~~l 179 (189)
++.+|.++++
T Consensus 172 ~~~~~~~~f~ 181 (204)
T PRK05920 172 QTIDDLVDFV 181 (204)
T ss_pred CCHHHHHHHH
Confidence 5667877776
No 272
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=34.22 E-value=67 Score=25.65 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHH
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQ 31 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~ 31 (189)
.+++|+|||||=++.+..+...++++-+.
T Consensus 2 ~~~~i~i~gGsFdP~H~GH~~l~~~a~~~ 30 (203)
T PRK00071 2 MMKRIGLFGGTFDPPHYGHLAIAEEAAER 30 (203)
T ss_pred CCcEEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 35679999999888777777777665543
No 273
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.20 E-value=77 Score=27.10 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
|+.+++|+|.|... ....++..|+++|+.|.-
T Consensus 1 ~~~~m~I~iIG~G~---------mG~~ia~~L~~~G~~V~~ 32 (328)
T PRK14618 1 MHHGMRVAVLGAGA---------WGTALAVLAASKGVPVRL 32 (328)
T ss_pred CCCCCeEEEECcCH---------HHHHHHHHHHHCCCeEEE
Confidence 77889999998864 344677888888987543
No 274
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=34.15 E-value=1.5e+02 Score=26.95 Aligned_cols=70 Identities=21% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCcc
Q 045940 91 HERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSS 161 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~ 161 (189)
.-|+-+=...++++++-|==+|||.|.+++..+.+-.- -+||+--.+..=-|..+.-|.--...|+|+..
T Consensus 318 ~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~g-y~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 318 RLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAG-YTAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred HHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCC-CeEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 45566666678999999999999999999998777432 26776655433344555545444556666543
No 275
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=34.14 E-value=1.6e+02 Score=20.83 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHC----CCe-EEE--cCCC-CChhHHHHHHHHhcC
Q 045940 22 SDAALDLATQLVER----KIN-LVY--GGGS-VGLMGLVSQTIFDGG 60 (189)
Q Consensus 22 ~~~A~~lg~~la~~----g~~-lv~--GGg~-~GlM~a~a~ga~~~g 60 (189)
.+.|+.+|+.||++ |.. ++. |+.. -|-+.|+++++.++|
T Consensus 56 ~~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 56 VEAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 47788888888774 443 222 4433 489999999999976
No 276
>PRK06756 flavodoxin; Provisional
Probab=33.98 E-value=2e+02 Score=21.38 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=39.0
Q ss_pred HHhcCeeEEecCC--cchHHH-HHHHHHHH-hcCCCCCcEEEEeCCC--Cc---hHHHHHHHHHHHcCCCCccccCcEEE
Q 045940 98 ARRADAFIALPGG--YGTMEE-LLEMITWS-QLGIHDKPVGVLNVDG--YY---DSLLRFFDKGVEEGFIKSSARNIVIS 168 (189)
Q Consensus 98 ~~~sda~I~lpGG--~GTL~E-l~~~~~~~-~~~~~~kPiill~~~g--~~---~~l~~~l~~~~~~g~i~~~~~~~i~~ 168 (189)
+..+|++|+-.-- .|.+.. +...+... .....+||++++++.+ |+ ..+..+.+.+.+.|+---...-.+..
T Consensus 47 ~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~ 126 (148)
T PRK06756 47 LEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVEL 126 (148)
T ss_pred HhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEec
Confidence 3567876665422 354443 33333322 2334689999997733 22 23333334555556533333344555
Q ss_pred eCCHHHH
Q 045940 169 AKNARDL 175 (189)
Q Consensus 169 ~~~~ee~ 175 (189)
..+.+++
T Consensus 127 ~p~~~d~ 133 (148)
T PRK06756 127 TPEDEDV 133 (148)
T ss_pred CCCHHHH
Confidence 5554443
No 277
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=33.91 E-value=1.2e+02 Score=26.45 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=35.8
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 8 CVFCGSNSGNRKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 8 ~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
+++|+||........+.-+++.+.|-+.++. |++=||. |-|..+.+=+ +.|-.||||
T Consensus 66 t~LgtsR~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~-~~gi~vigi 123 (324)
T TIGR02483 66 TILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGD-GTLGIARRLA-DKGLPVVGV 123 (324)
T ss_pred ccccCCCCCccccCHHHHHHHHHHHHHcCCCEEEEECCc-hHHHHHHHHH-hcCCCEEee
Confidence 4677887654221123344666677777665 5555667 9998887644 457788887
No 278
>PLN02564 6-phosphofructokinase
Probab=33.59 E-value=1.3e+02 Score=27.98 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=35.8
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHH---hcCCe--EEEE
Q 045940 8 CVFCGSNSGNRKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIF---DGGCH--VLGV 66 (189)
Q Consensus 8 ~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~---~~gg~--viGv 66 (189)
++.|+||... ...++.+.|-+.|+. |++=||. |-|..+.+=+. +.|-+ ||||
T Consensus 154 TiLGTsR~~~------~~~~iv~~L~~~~Id~LivIGGD-GS~~gA~~L~e~~~~~g~~i~VIGI 211 (484)
T PLN02564 154 TILGTSRGGH------DTSKIVDSIQDRGINQVYIIGGD-GTQKGASVIYEEIRRRGLKVAVAGI 211 (484)
T ss_pred ceeccCCCcc------hHHHHHHHHHHhCCCEEEEECCc-hHHHHHHHHHHHHHHcCCCceEEEe
Confidence 4667777532 234677888888877 6666677 99988876444 36755 8888
No 279
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=33.55 E-value=1.5e+02 Score=23.66 Aligned_cols=46 Identities=33% Similarity=0.329 Sum_probs=28.7
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHh-cCCCCCcEEEEeCCCCc
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQ-LGIHDKPVGVLNVDGYY 142 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~-~~~~~kPiill~~~g~~ 142 (189)
.+.+...+.|+|+||. |...+++.+.-.. .+..-+.+.+++.|.+|
T Consensus 16 ~i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 16 AIAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERV 62 (199)
T ss_dssp HHHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEES
T ss_pred HHHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccc
Confidence 3356688999999995 4446776665433 22344678888877676
No 280
>PRK13059 putative lipid kinase; Reviewed
Probab=33.55 E-value=87 Score=26.53 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=27.1
Q ss_pred HHHHCCC-eEEEcCCCCChhHHHHHHHHhcC-CeEEEEecC
Q 045940 31 QLVERKI-NLVYGGGSVGLMGLVSQTIFDGG-CHVLGVIPK 69 (189)
Q Consensus 31 ~la~~g~-~lv~GGg~~GlM~a~a~ga~~~g-g~viGv~p~ 69 (189)
..++.++ .|+..||. |.-.+|+.+..+.+ ...+||+|.
T Consensus 51 ~~~~~~~d~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 51 KDIDESYKYILIAGGD-GTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HHhhcCCCEEEEECCc-cHHHHHHHHHHhcCCCCcEEEECC
Confidence 3344444 45666677 99999999998765 456999994
No 281
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=33.35 E-value=1.4e+02 Score=22.21 Aligned_cols=40 Identities=25% Similarity=0.415 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHC----CCe-EEE--cCC-CCChhHHHHHHHHhcCC
Q 045940 22 SDAALDLATQLVER----KIN-LVY--GGG-SVGLMGLVSQTIFDGGC 61 (189)
Q Consensus 22 ~~~A~~lg~~la~~----g~~-lv~--GGg-~~GlM~a~a~ga~~~gg 61 (189)
.+.|+.+|+.||++ |+. +++ ||. .-|-+.|+++||.++|-
T Consensus 68 ~~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~Gl 115 (117)
T PRK05593 68 KEAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGL 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhCC
Confidence 35688888888774 655 333 442 25899999999999873
No 282
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=33.20 E-value=73 Score=27.00 Aligned_cols=40 Identities=20% Similarity=0.532 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHH-HHHHHHc
Q 045940 113 TMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRF-FDKGVEE 155 (189)
Q Consensus 113 TL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~-l~~~~~~ 155 (189)
|++.+++.+.-........|++++. ||+++... ++++.++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm~---Y~N~i~~~G~e~F~~~ 110 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLMT---YYNPIFQYGIERFFKE 110 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEEE----HHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCEEEEe---eccHHhccchHHHHHH
No 283
>PRK07677 short chain dehydrogenase; Provisional
Probab=33.20 E-value=68 Score=25.75 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=7.2
Q ss_pred HHHHHHHHCCCeEEE
Q 045940 27 DLATQLVERKINLVY 41 (189)
Q Consensus 27 ~lg~~la~~g~~lv~ 41 (189)
.+++.|+++|+.|+.
T Consensus 16 ~ia~~l~~~G~~Vi~ 30 (252)
T PRK07677 16 AMAKRFAEEGANVVI 30 (252)
T ss_pred HHHHHHHHCCCEEEE
Confidence 444444555555443
No 284
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=33.11 E-value=54 Score=29.72 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCC----------CChhHHHHHHHHhcCCeEE
Q 045940 22 SDAALDLATQLVERKINLVYGGGS----------VGLMGLVSQTIFDGGCHVL 64 (189)
Q Consensus 22 ~~~A~~lg~~la~~g~~lv~GGg~----------~GlM~a~a~ga~~~gg~vi 64 (189)
.+-|+.|++.|.++|+.||+||-. .|+-+..++.+++.-+.++
T Consensus 290 v~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~ 342 (413)
T COG0112 290 VKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITV 342 (413)
T ss_pred HHHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEee
Confidence 456788899999999999998743 2677888888887655443
No 285
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=33.11 E-value=38 Score=30.48 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=31.8
Q ss_pred chH-HHHHHHHHHHcCCCCccccC---cEEEeCCHHHHHHHhhc
Q 045940 142 YDS-LLRFFDKGVEEGFIKSSARN---IVISAKNARDLLQGMEV 181 (189)
Q Consensus 142 ~~~-l~~~l~~~~~~g~i~~~~~~---~i~~~~~~ee~~~~l~~ 181 (189)
|.. +..-++.|+.+|.|+++..+ .-.+..+++|+.+.+++
T Consensus 255 ~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~ 298 (386)
T PLN02668 255 FGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEA 298 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhh
Confidence 444 55567899999999998754 45889999999998874
No 286
>PRK06924 short chain dehydrogenase; Provisional
Probab=33.00 E-value=79 Score=25.20 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|++|.|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~ 29 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVI 29 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEE
No 287
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=32.98 E-value=85 Score=26.10 Aligned_cols=71 Identities=6% Similarity=0.041 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcC-CCCCcEEEEeCCC-CchHHHHHHHHHHHcCCCCccccCcEEE
Q 045940 91 HERKAEMARRADAFIALPGGYGTMEELLEMITWSQLG-IHDKPVGVLNVDG-YYDSLLRFFDKGVEEGFIKSSARNIVIS 168 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~-~~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 168 (189)
.+|....++.||.+|+++ |=-++.-+..+.... ..+.|++++|.+. .++ ....+.+
T Consensus 169 ~~~~~~~~~~aDl~lviG----TSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d------------------~~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVMG----SSLVVYPAAELPLITVRSGGKLVIVNLGETPLD------------------DIATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEeC----cCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCC------------------cceeEEE
Confidence 466666778899999854 332223333332222 4679999999742 111 1123678
Q ss_pred eCCHHHHHHHhhcCC
Q 045940 169 AKNARDLLQGMEVPN 183 (189)
Q Consensus 169 ~~~~ee~~~~l~~~~ 183 (189)
..+.+|+++.|.++.
T Consensus 227 ~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 227 NMDVVEFANRVMSEG 241 (244)
T ss_pred eCCHHHHHHHHHHHh
Confidence 889999999987654
No 288
>PRK06180 short chain dehydrogenase; Provisional
Probab=32.92 E-value=64 Score=26.47 Aligned_cols=37 Identities=19% Similarity=0.012 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGS 45 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~ 45 (189)
|...++|.|.|+++ -..+.+.+.|+++|+.|+..+..
T Consensus 1 ~~~~~~vlVtGasg--------giG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 1 MSSMKTWLITGVSS--------GFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCCCEEEEecCCC--------hHHHHHHHHHHhCcCEEEEEeCC
Confidence 44456777888765 23446666677778887765544
No 289
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.67 E-value=2.5e+02 Score=26.42 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=41.8
Q ss_pred CCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCCCChhHH
Q 045940 2 GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKIN------------------------------LVYGGGSVGLMGL 51 (189)
Q Consensus 2 ~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~------------------------------lv~GGg~~GlM~a 51 (189)
++.++|+|+.-.. .+...+.++++.++|.++|+. +|+=||. |.|=-
T Consensus 288 ~~~~~i~iv~~~~---~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD-GT~L~ 363 (569)
T PRK14076 288 IKPTKFGIVSRID---NEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGD-GTVLR 363 (569)
T ss_pred cCCcEEEEEcCCC---CHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCc-HHHHH
Confidence 4667899996543 466777888888888666542 2333456 77777
Q ss_pred HHHHHHhcCCeEEEE
Q 045940 52 VSQTIFDGGCHVLGV 66 (189)
Q Consensus 52 ~a~ga~~~gg~viGv 66 (189)
+++-....+-.++||
T Consensus 364 aa~~~~~~~~PilGi 378 (569)
T PRK14076 364 ASKLVNGEEIPIICI 378 (569)
T ss_pred HHHHhcCCCCCEEEE
Confidence 777666667788888
No 290
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=32.66 E-value=1e+02 Score=22.86 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINL 39 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~l 39 (189)
+|.++.+|... +..-.+.|+.+.+.+.+.|+.+
T Consensus 2 kilii~gS~r~-~~~t~~l~~~~~~~l~~~g~e~ 34 (152)
T PF03358_consen 2 KILIINGSPRK-NSNTRKLAEAVAEQLEEAGAEV 34 (152)
T ss_dssp EEEEEESSSST-TSHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEEEECcCCC-CCHHHHHHHHHHHHHHHcCCEE
Confidence 44444444322 3445677777777777765544
No 291
>PRK07102 short chain dehydrogenase; Provisional
Probab=32.59 E-value=70 Score=25.48 Aligned_cols=14 Identities=0% Similarity=0.083 Sum_probs=8.9
Q ss_pred eCCHHHHHHHhhcC
Q 045940 169 AKNARDLLQGMEVP 182 (189)
Q Consensus 169 ~~~~ee~~~~l~~~ 182 (189)
.-+++++.+.+.+.
T Consensus 196 ~~~~~~~a~~i~~~ 209 (243)
T PRK07102 196 TAQPEEVAKDIFRA 209 (243)
T ss_pred cCCHHHHHHHHHHH
Confidence 45677777766543
No 292
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=32.52 E-value=51 Score=27.12 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=51.6
Q ss_pred HHHhcCeeEEecCCcchHHHHHHHHHHHh-----cC-CCCCcEEEEeC--CCCch--HHHHHHHHHHHcCC--CCccccC
Q 045940 97 MARRADAFIALPGGYGTMEELLEMITWSQ-----LG-IHDKPVGVLNV--DGYYD--SLLRFFDKGVEEGF--IKSSARN 164 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~~~~~~-----~~-~~~kPiill~~--~g~~~--~l~~~l~~~~~~g~--i~~~~~~ 164 (189)
+.+.+|++|+.|-..+|+.-+..=.+-.- +. ..++|+++.-. ..+|+ .....++.+.+.|+ +.+....
T Consensus 93 La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~ 172 (209)
T PLN02496 93 LRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKR 172 (209)
T ss_pred hhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCc
Confidence 45679999999999999987764322111 11 14799997732 23776 23344566666563 3332221
Q ss_pred c------EEEeCCHHHHHHHhhcCC
Q 045940 165 I------VISAKNARDLLQGMEVPN 183 (189)
Q Consensus 165 ~------i~~~~~~ee~~~~l~~~~ 183 (189)
. .--..+|+++++.+.++.
T Consensus 173 lAcg~~G~Grm~ep~~I~~~i~~~l 197 (209)
T PLN02496 173 LACGDYGNGAMAEPSLIYSTVRLFL 197 (209)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHH
Confidence 1 122347899988887643
No 293
>PRK06180 short chain dehydrogenase; Provisional
Probab=32.47 E-value=93 Score=25.49 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=26.2
Q ss_pred CeEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 37 INLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
..|||||.. |+=.++++...+.|-+|+.+.
T Consensus 6 ~vlVtGasg-giG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 6 TWLITGVSS-GFGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred EEEEecCCC-hHHHHHHHHHHhCcCEEEEEe
Confidence 479999988 999999999888888888874
No 294
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=32.43 E-value=1.3e+02 Score=24.79 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 2 GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 2 ~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
.|-..|+|||||=++....+...|+..-+.+...++.+|
T Consensus 19 ~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 19 PRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 356789999999988888888888888888877666554
No 295
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=32.42 E-value=3.5e+02 Score=26.02 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHC-CCeEEEcCCCCC---hhHHHHHHHHhc--CCeEEEEecCccccccccCCCCceEEecCCHHHHH
Q 045940 21 FSDAALDLATQLVER-KINLVYGGGSVG---LMGLVSQTIFDG--GCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERK 94 (189)
Q Consensus 21 ~~~~A~~lg~~la~~-g~~lv~GGg~~G---lM~a~a~ga~~~--gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~ 94 (189)
.+..|.++.+...+. +..++||..++| |+.|++..+.+. |.+|+-+....+. .+. ..-+....+..-+
T Consensus 299 A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-~el-----~~al~~~~~~~f~ 372 (617)
T PRK14086 299 AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-NEF-----INSIRDGKGDSFR 372 (617)
T ss_pred HHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHH-----HHHHHhccHHHHH
Confidence 344555554433221 335788765545 899999888763 4555544322111 010 0000111221111
Q ss_pred HHHHHhcCeeEE-----ecCCcchHHHHHHHHHHHhcCCCCCcEEEE
Q 045940 95 AEMARRADAFIA-----LPGGYGTMEELLEMITWSQLGIHDKPVGVL 136 (189)
Q Consensus 95 ~~m~~~sda~I~-----lpGG~GTL~El~~~~~~~~~~~~~kPiill 136 (189)
.. ++..|.+|+ +.|--.|-+|||.++...+ ..+|+|++.
T Consensus 373 ~~-y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIIT 416 (617)
T PRK14086 373 RR-YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLS 416 (617)
T ss_pred HH-hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEe
Confidence 11 345676554 4555667788998775443 356888775
No 296
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=32.40 E-value=2.6e+02 Score=22.85 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=27.6
Q ss_pred HHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCc
Q 045940 98 ARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYY 142 (189)
Q Consensus 98 ~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~ 142 (189)
.+...+.|+|+||. |...+++.++-. ...-..+.++..+.+|
T Consensus 25 ~~~~~~~lalsGGs-tp~~~y~~L~~~--~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 25 AERGQFSLALSGGR-SPIALLEALAAQ--PLDWSRIHLFLGDERY 66 (233)
T ss_pred HhcCcEEEEECCCc-cHHHHHHHHhhC--CCCcceEEEEEecccc
Confidence 34567899999984 666777777632 3334556666665566
No 297
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=32.30 E-value=64 Score=27.16 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=21.9
Q ss_pred CCeEEEE-EcCCCCCCC------hHHHHHHHHHHHHHHHCCCe--EE-EcCCCCC
Q 045940 3 KFKRVCV-FCGSNSGNR------KIFSDAALDLATQLVERKIN--LV-YGGGSVG 47 (189)
Q Consensus 3 ~~~~I~V-~g~s~~~~~------~~~~~~A~~lg~~la~~g~~--lv-~GGg~~G 47 (189)
+|+.|-| ||||....+ +...+.|+.+.+.. ++|+. || +|++..|
T Consensus 8 ~~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~-~~g~~vvlV~Sga~~~g 61 (266)
T PRK12314 8 NAKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLM-NKGKEVILVSSGAIGAG 61 (266)
T ss_pred hCCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHH-HCCCeEEEEeeCccccc
Confidence 3455555 899887622 22344444444333 35644 43 6655433
No 298
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=32.02 E-value=80 Score=23.94 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHHHHH-CCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 27 DLATQLVE-RKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 27 ~lg~~la~-~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
++-+.+.. ++..|.+|||. ++..-+...+...|.+|-+
T Consensus 53 ~~l~~l~~~~~~VIa~GGG~--~~~~~~~~~L~~~g~vI~L 91 (158)
T PF01202_consen 53 EALRELLKENNCVIACGGGI--VLKEENRELLKENGLVIYL 91 (158)
T ss_dssp HHHHHHHCSSSEEEEE-TTG--GGSHHHHHHHHHHSEEEEE
T ss_pred HHHHHHhccCcEEEeCCCCC--cCcHHHHHHHHhCCEEEEE
Confidence 33344444 47778888875 6666677788888888888
No 299
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=32.02 E-value=1.2e+02 Score=24.33 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=24.2
Q ss_pred HHHHhcCeeEEec--CCcchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 96 EMARRADAFIALP--GGYGTMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 96 ~m~~~sda~I~lp--GG~GTL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
-+...||++|.-. .|.|+- +.|++. .++|++..+..
T Consensus 259 ~~~~~~d~~i~ps~~e~~~~~--~~Ea~~------~G~PvI~~~~~ 296 (353)
T cd03811 259 PYLKAADLFVLSSRYEGFPNV--LLEAMA------LGTPVVATDCP 296 (353)
T ss_pred HHHHhCCEEEeCcccCCCCcH--HHHHHH------hCCCEEEcCCC
Confidence 3567899887643 344443 567774 79999988765
No 300
>PRK05993 short chain dehydrogenase; Provisional
Probab=32.00 E-value=97 Score=25.41 Aligned_cols=32 Identities=13% Similarity=0.021 Sum_probs=0.0
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|...++|.|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 m~~~k~vlItGasg--------giG~~la~~l~~~G~~Vi 32 (277)
T PRK05993 1 MDMKRSILITGCSS--------GIGAYCARALQSDGWRVF 32 (277)
T ss_pred CCCCCEEEEeCCCc--------HHHHHHHHHHHHCCCEEE
No 301
>PRK05569 flavodoxin; Provisional
Probab=31.95 E-value=69 Score=23.56 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=26.5
Q ss_pred HHhcCeeEEecCCc-c--hH-HHHHHHHHHHhc-CCCCCcEEEEeCCCCc-hHHHHHHHH
Q 045940 98 ARRADAFIALPGGY-G--TM-EELLEMITWSQL-GIHDKPVGVLNVDGYY-DSLLRFFDK 151 (189)
Q Consensus 98 ~~~sda~I~lpGG~-G--TL-~El~~~~~~~~~-~~~~kPiill~~~g~~-~~l~~~l~~ 151 (189)
+..+|++|+-.--+ + +. .++...+...+. ...+||++++.+.|.. ......++.
T Consensus 46 ~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~ 105 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKD 105 (141)
T ss_pred HhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 34677766554321 1 11 233333332221 2357999999887644 233444443
No 302
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=31.87 E-value=2.4e+02 Score=23.55 Aligned_cols=41 Identities=29% Similarity=0.522 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhcCCCCCcEEEEeCCCCchH-----HHHHHHHHHHcC
Q 045940 113 TMEELLEMITWSQLGIHDKPVGVLNVDGYYDS-----LLRFFDKGVEEG 156 (189)
Q Consensus 113 TL~El~~~~~~~~~~~~~kPiill~~~g~~~~-----l~~~l~~~~~~g 156 (189)
|++.+++......-.....|++++. ||++ +.+|++.+.+.|
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv~m~---Y~Npi~~~G~e~f~~~~~~aG 115 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIGLLT---YYNLIFRKGVEEFYAKCKEVG 115 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHhhhhHHHHHHHHHHcC
Confidence 5566666654333222467988774 6665 345677766655
No 303
>PRK03202 6-phosphofructokinase; Provisional
Probab=31.82 E-value=1.3e+02 Score=26.22 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=37.5
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 8 CVFCGSNSGNRKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 8 ~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
+++|+|+..+.. -.+.-.++.+.|.++++. |++=||. |-|..+.+=+ +.+-.+|||
T Consensus 66 s~LgtsR~~~~~-~~~~~~~~~~~l~~~~Id~Li~IGGd-~s~~~a~~L~-e~~i~vigi 122 (320)
T PRK03202 66 TILGSARFPEFK-DEEGRAKAIENLKKLGIDALVVIGGD-GSYMGAKRLT-EHGIPVIGL 122 (320)
T ss_pred cccccCCCCCcC-CHHHHHHHHHHHHHcCCCEEEEeCCh-HHHHHHHHHH-hcCCcEEEe
Confidence 457788764421 123344667777777766 6666677 9999888855 568899997
No 304
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.75 E-value=1.8e+02 Score=20.22 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=52.0
Q ss_pred EEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcch--HHH
Q 045940 39 LVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGT--MEE 116 (189)
Q Consensus 39 lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GT--L~E 116 (189)
++-||-. ......-+-+.+.|+..+-.-+ ... ......+-.-.+..+|.+|++-+-+.= ...
T Consensus 3 liVGG~~-~~~~~~~~~~~~~G~~~~~hg~--~~~-------------~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~ 66 (97)
T PF10087_consen 3 LIVGGRE-DRERRYKRILEKYGGKLIHHGR--DGG-------------DEKKASRLPSKIKKADLVIVFTDYVSHNAMWK 66 (97)
T ss_pred EEEcCCc-ccHHHHHHHHHHcCCEEEEEec--CCC-------------CccchhHHHHhcCCCCEEEEEeCCcChHHHHH
Confidence 4556644 5566666666677777665511 000 001122334556788999999886542 222
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHH
Q 045940 117 LLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDK 151 (189)
Q Consensus 117 l~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~ 151 (189)
+-+.. ..+++|++..+..| |+.+...|++
T Consensus 67 vk~~a-----kk~~ip~~~~~~~~-~~~l~~~l~~ 95 (97)
T PF10087_consen 67 VKKAA-----KKYGIPIIYSRSRG-VSSLERALER 95 (97)
T ss_pred HHHHH-----HHcCCcEEEECCCC-HHHHHHHHHh
Confidence 22222 15789999998653 7777776654
No 305
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=31.69 E-value=73 Score=25.36 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=7.1
Q ss_pred HHHHHHHHCCCeEEE
Q 045940 27 DLATQLVERKINLVY 41 (189)
Q Consensus 27 ~lg~~la~~g~~lv~ 41 (189)
.+++.|+++|+.|+.
T Consensus 20 ~ia~~l~~~G~~vi~ 34 (248)
T TIGR01832 20 GIAVGLAEAGADIVG 34 (248)
T ss_pred HHHHHHHHCCCEEEE
Confidence 444444555555443
No 306
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=31.68 E-value=98 Score=26.90 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=37.5
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEE------eCCHHHHHHHhhc
Q 045940 108 PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVIS------AKNARDLLQGMEV 181 (189)
Q Consensus 108 pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~------~~~~ee~~~~l~~ 181 (189)
-.+.||++|+++..+ .+ ++.++ -||++++.|.+ + +..+.|.| -.||...++.|.+
T Consensus 151 ~~~~~~~e~~fe~F~------~G--~~~~G--p~~dHVl~~W~-~--------~~~~~VLFl~YEdmk~dp~~~ikrlae 211 (297)
T KOG1584|consen 151 QPGPGTFEEFFESFC------NG--VVPYG--PWWDHVLGYWE-L--------EDPKNVLFLKYEDMKADPKGEIKKLAE 211 (297)
T ss_pred CCCCCcHHHHHHHHh------CC--cCCcC--ChHHHHHHHHH-h--------cCCCceEEEEHHHhhhCHHHHHHHHHH
Confidence 356788999999985 22 33443 48998888876 1 12233322 3577777777777
Q ss_pred CCCCC
Q 045940 182 PNLLP 186 (189)
Q Consensus 182 ~~~~~ 186 (189)
+.-.|
T Consensus 212 FLg~~ 216 (297)
T KOG1584|consen 212 FLGCP 216 (297)
T ss_pred HhCCC
Confidence 65444
No 307
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=31.46 E-value=96 Score=24.17 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKI 37 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~ 37 (189)
++|++|+-+....++.|++...+-.+.+...+.
T Consensus 68 KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~~ 100 (160)
T PF12641_consen 68 KKVALFGTAGAGPDSEYAKKILKNVEALLPKGN 100 (160)
T ss_pred CeEEEEEecCCCCchHHHHHHHHHHHHhhccCC
Confidence 578888888777778787776666666655553
No 308
>PRK08264 short chain dehydrogenase; Validated
Probab=31.45 E-value=2.6e+02 Score=21.94 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=38.4
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCC-eEEEEecCccccccccCCCCceEEe--cCCHHHHHHHHHH--hcCeeEEecCC
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGC-HVLGVIPKALVPIEISGQTVGDVLI--VSDMHERKAEMAR--RADAFIALPGG 110 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg-~viGv~p~~~~~~e~~~~~~~~~~~--~~~~~~R~~~m~~--~sda~I~lpGG 110 (189)
...+|+||.. |+=.++++...+.|- +|+.+.-+.....+ ..... ..+. ..+....+..+.. .-|++|-..|.
T Consensus 7 ~~vlItGgsg-~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 7 KVVLVTGANR-GIGRAFVEQLLARGAAKVYAAARDPESVTD-LGPRV-VPLQLDVTDPASVAAAAEAASDVTILVNNAGI 83 (238)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCcccEEEEecChhhhhh-cCCce-EEEEecCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 3467888876 888888888887776 66666322111111 01111 1111 2233343333333 35888888876
No 309
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=31.44 E-value=95 Score=24.98 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=22.5
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
++....|++|+.|......++....+. ..+.|+++++.
T Consensus 51 l~~~~vdgiIi~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (273)
T cd06309 51 FIAQGVDVIILAPVVETGWDPVLKEAK-----AAGIPVILVDR 88 (273)
T ss_pred HHHcCCCEEEEcCCccccchHHHHHHH-----HCCCCEEEEec
Confidence 444568999888765443334333221 35678888875
No 310
>PLN02740 Alcohol dehydrogenase-like
Probab=31.32 E-value=1.5e+02 Score=25.75 Aligned_cols=83 Identities=23% Similarity=0.292 Sum_probs=42.0
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCC-eEEEEecCccccccccC-CCCceEEecC----CHHHHHHHHHH-hcCeeEEec
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGC-HVLGVIPKALVPIEISG-QTVGDVLIVS----DMHERKAEMAR-RADAFIALP 108 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg-~viGv~p~~~~~~e~~~-~~~~~~~~~~----~~~~R~~~m~~-~sda~I~lp 108 (189)
...+|+|+|+.|++ +..-|+..|. +|+.+..... ..+... -..+.++... ++.++-..+.. ..|++|=..
T Consensus 200 ~~VlV~G~G~vG~~--a~q~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 200 SSVAIFGLGAVGLA--VAEGARARGASKIIGVDINPE-KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCCcEEEEcCChH-HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 46788887666655 4556777787 5888743211 111110 0112222222 13332222221 367777777
Q ss_pred CCcchHHHHHHHH
Q 045940 109 GGYGTMEELLEMI 121 (189)
Q Consensus 109 GG~GTL~El~~~~ 121 (189)
|+..++.+.+...
T Consensus 277 G~~~~~~~a~~~~ 289 (381)
T PLN02740 277 GNVEVLREAFLST 289 (381)
T ss_pred CChHHHHHHHHhh
Confidence 7766777666544
No 311
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=31.26 E-value=85 Score=27.40 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGS 45 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~ 45 (189)
|+|.++|.++....--+..+...|++.|.+.|+.+.+=+.+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~ 41 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQ 41 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEeccc
Confidence 57899998888777788899999999999999988876655
No 312
>TIGR00035 asp_race aspartate racemase.
Probab=31.21 E-value=2.3e+02 Score=22.98 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=44.0
Q ss_pred EEecCCcchHH--HHHHH---HHHHhcCCCCCcEEEEeCC-----------CCchHHHHHHHHHHHcCCCCccccCcEEE
Q 045940 105 IALPGGYGTME--ELLEM---ITWSQLGIHDKPVGVLNVD-----------GYYDSLLRFFDKGVEEGFIKSSARNIVIS 168 (189)
Q Consensus 105 I~lpGG~GTL~--El~~~---~~~~~~~~~~kPiill~~~-----------g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 168 (189)
|-+-||.|.+. +++.- .+-.+.++...|+++++.- +=|+....++....+. +-+....-.+.-
T Consensus 4 iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~-L~~~g~d~ivia 82 (229)
T TIGR00035 4 IGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVK-LENAGADFIIMP 82 (229)
T ss_pred EEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHH-HHHcCCCEEEEC
Confidence 55669999876 22222 2233445666777777653 2344444444333221 111123345677
Q ss_pred eCCHHHHHHHhhcCCCCC
Q 045940 169 AKNARDLLQGMEVPNLLP 186 (189)
Q Consensus 169 ~~~~ee~~~~l~~~~~~~ 186 (189)
|+|..-.++.|++..+.|
T Consensus 83 CNTah~~~~~l~~~~~iP 100 (229)
T TIGR00035 83 CNTAHKFAEDIQKAIGIP 100 (229)
T ss_pred CccHHHHHHHHHHhCCCC
Confidence 888888888887754444
No 313
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=31.12 E-value=1.9e+02 Score=20.78 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=33.7
Q ss_pred EEecCCH--HHHHHHHH--HhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHH
Q 045940 84 VLIVSDM--HERKAEMA--RRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDK 151 (189)
Q Consensus 84 ~~~~~~~--~~R~~~m~--~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~ 151 (189)
++++.|. ..|+.+.- +..+.-++.. ||-+||..++ |...+-++.+...||.+.+++.++.
T Consensus 37 VI~A~D~s~~~kkki~~~~~~~~vp~~~~---~t~~eLg~a~-----Gk~~~~~iai~d~g~a~~l~~~~~~ 100 (104)
T PRK05583 37 IIISNDISENSKNKFKNYCNKYNIPYIEG---YSKEELGNAI-----GRDEIKILGVKDKNMAKKLLKLWNE 100 (104)
T ss_pred EEEeCCCCHhHHHHHHHHHHHcCCCEEEe---cCHHHHHHHh-----CCCCeEEEEEeChHHHHHHHHHHHh
Confidence 3445554 23444432 3445555444 6889998887 2322224444456798888876653
No 314
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=31.00 E-value=64 Score=28.22 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhc
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDG 59 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~ 59 (189)
++.+-||.-|+.++...+ .+++||++|+.++-=+..-.=-+++++.-.+.
T Consensus 47 ~~g~WAVVTGaTDGIGKa-------yA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~ 96 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKA-------YARELAKRGFNVVLISRTQEKLEAVAKEIEEK 96 (312)
T ss_pred hcCCEEEEECCCCcchHH-------HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 344667777777776653 44567778888887777766666666655553
No 315
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=30.87 E-value=3.3e+02 Score=23.05 Aligned_cols=107 Identities=22% Similarity=0.312 Sum_probs=57.0
Q ss_pred HHHHHCCC--eEEEcCCCCChhH--HHHHHHHh-cC--CeEEEEecCcccc--------ccccCCCC----ceEEecCCH
Q 045940 30 TQLVERKI--NLVYGGGSVGLMG--LVSQTIFD-GG--CHVLGVIPKALVP--------IEISGQTV----GDVLIVSDM 90 (189)
Q Consensus 30 ~~la~~g~--~lv~GGg~~GlM~--a~a~ga~~-~g--g~viGv~p~~~~~--------~e~~~~~~----~~~~~~~~~ 90 (189)
-.+|+.|+ .+|++|=+ |+-+ ++.-.+.+ .+ ..=+-|+|..... ....|+.+ +++..+-..
T Consensus 66 ielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSDlLtPwe~ 144 (249)
T COG1010 66 IELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSDLLTPWEV 144 (249)
T ss_pred HHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHhcCCcHHH
Confidence 34455544 58888877 8743 33333333 44 2346667754321 11223221 122222233
Q ss_pred HHHHHHHHHhcCeeEEe--cCCcc---hHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 91 HERKAEMARRADAFIAL--PGGYG---TMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~l--pGG~G---TL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
-+++-.....+|.+|++ |=+-+ -+.+.++++. +......||+++..-
T Consensus 145 IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~--~~r~~~tpVgivrna 196 (249)
T COG1010 145 IEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILR--EHRSPDTPVGIVRNA 196 (249)
T ss_pred HHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHH--HhcCCCCcEEEEecC
Confidence 45555667889988887 55555 4455555542 333456899998754
No 316
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=30.86 E-value=1.8e+02 Score=26.38 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHH---hc--CCeEEEE
Q 045940 25 ALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIF---DG--GCHVLGV 66 (189)
Q Consensus 25 A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~---~~--gg~viGv 66 (189)
-.++.+.|.+.|+. |++=||. |-|..+.+=+. +. +-.||||
T Consensus 101 ~~~~~~~L~~~~Id~Li~IGGd-gS~~~a~~L~~~~~~~g~~i~vvgI 147 (403)
T PRK06555 101 LKVAAERLAADGVDILHTIGGD-DTNTTAADLAAYLAENGYDLTVVGL 147 (403)
T ss_pred HHHHHHHHHHcCCCEEEEECCh-hHHHHHHHHHHHHHHhCCCceEEEe
Confidence 44777888888876 6667778 99988876443 34 5688888
No 317
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=30.72 E-value=1.2e+02 Score=25.88 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=32.7
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC--CCch-----HHHHHHHHHHHcCC
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD--GYYD-----SLLRFFDKGVEEGF 157 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~--g~~~-----~l~~~l~~~~~~g~ 157 (189)
.+|.+|+ -||=||+-+.+..+. ..++|++=+|.+ ||.. .+.+.|+++.+..|
T Consensus 63 ~~d~vi~-~GGDGt~l~~~~~~~-----~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 63 RADLAVV-LGGDGTMLGIGRQLA-----PYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred CCCEEEE-ECCcHHHHHHHHHhc-----CCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCc
Confidence 4565555 578999987766542 357898877653 5654 45556666654443
No 318
>PRK00208 thiG thiazole synthase; Reviewed
Probab=30.70 E-value=3.4e+02 Score=23.05 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCce
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV-YGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGD 83 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv-~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~ 83 (189)
-++=|.+.......+ -...-+-.+.|.+.|+.++ |-.-. + ..++...+.|-..+ |..-.+. ..+ ..
T Consensus 94 iKlEVi~d~~~llpd--~~~tv~aa~~L~~~Gf~vlpyc~~d--~--~~ak~l~~~G~~~v---mPlg~pI--Gsg-~g- 160 (250)
T PRK00208 94 IKLEVIGDDKTLLPD--PIETLKAAEILVKEGFVVLPYCTDD--P--VLAKRLEEAGCAAV---MPLGAPI--GSG-LG- 160 (250)
T ss_pred EEEEEecCCCCCCcC--HHHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe---CCCCcCC--CCC-CC-
Confidence 344566654433222 1334455667778899988 76644 2 33444445565555 3211111 111 00
Q ss_pred EEecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 84 VLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 84 ~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
+ .+ .+..+.+.+..+.-|+..||++|.+++.+++. .+.=-+++|+
T Consensus 161 -i--~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame------lGAdgVlV~S 205 (250)
T PRK00208 161 -L--LN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAME------LGADAVLLNT 205 (250)
T ss_pred -C--CC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH------cCCCEEEECh
Confidence 1 11 44466677778899999999999999999985 3444455554
No 319
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=30.56 E-value=53 Score=28.31 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHh
Q 045940 26 LDLATQLVERKINLVYGGGSVGLMGLVSQTIFD 58 (189)
Q Consensus 26 ~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~ 58 (189)
++|+|.|..+...||-+|| |.=+.+.-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 5789999999999998875 555666666554
No 320
>PRK05854 short chain dehydrogenase; Provisional
Probab=30.49 E-value=81 Score=26.68 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=10.6
Q ss_pred HHHHHHHHHCCCeEEEcCC
Q 045940 26 LDLATQLVERKINLVYGGG 44 (189)
Q Consensus 26 ~~lg~~la~~g~~lv~GGg 44 (189)
+++++.|+++|+.|+.-+.
T Consensus 28 ~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 28 LGLARRLAAAGAEVILPVR 46 (313)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 3455555666666655443
No 321
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=30.48 E-value=1.8e+02 Score=23.47 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhc-CCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeC
Q 045940 92 ERKAEMARRADAFIALPGGYGTMEELLEMITWSQL-GIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAK 170 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~-~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 170 (189)
++....++.+|.+|+++ -.++. .-++.+... ...+.|++++|.+.-+- + ....+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v---~p~~~l~~~~~~~~~~~i~iN~~~~~~---------------~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVV---YPAAGLPEEAKERGARVIEINPEPTPL---------------S--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccc---hhHHHHHHHHHHCCCeEEEECCCCCCC---------------C--CcCCEEEEC
Confidence 34445567899888865 33333 233333322 13678999999763211 1 223467778
Q ss_pred CHHHHHHHh
Q 045940 171 NARDLLQGM 179 (189)
Q Consensus 171 ~~ee~~~~l 179 (189)
+.+|+++.|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 899998876
No 322
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=30.44 E-value=1.4e+02 Score=24.36 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=22.7
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCC--CeEEEcCCCCChhHHH
Q 045940 10 FCGSNSGNRKIFSDAALDLATQLVERK--INLVYGGGSVGLMGLV 52 (189)
Q Consensus 10 ~g~s~~~~~~~~~~~A~~lg~~la~~g--~~lv~GGg~~GlM~a~ 52 (189)
|||+...+.+...+.++.+.+. .+.| ..||.||+. +.....
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l-~~~g~~~vvV~sg~g-~~~~~l 48 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKR-KKKGNQVVVVVSAMG-GTTDEL 48 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHH-HHcCCCEEEEECCCC-chhHHH
Confidence 7888775434445555555553 3444 457778754 444443
No 323
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=30.38 E-value=3.1e+02 Score=24.22 Aligned_cols=90 Identities=21% Similarity=0.183 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCc-eEEec--CCHHHHHHH
Q 045940 20 IFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVG-DVLIV--SDMHERKAE 96 (189)
Q Consensus 20 ~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~-~~~~~--~~~~~R~~~ 96 (189)
...+..+.+++..-...+.+|.|+|..| ..+++.-.+.|-.++.|-.+...-.+....... ..+.- .+...-++.
T Consensus 216 ~l~~~~~~~~~~~~~~~~iiIiG~G~~g--~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~ 293 (453)
T PRK09496 216 HIRAVMSEFGRLEKPVKRVMIVGGGNIG--YYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEE 293 (453)
T ss_pred HHHHHHHHhCccCCCCCEEEEECCCHHH--HHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhc
Confidence 3444444555433335778999997744 446665455577887773221100011111111 22222 233334444
Q ss_pred HHHhcCeeEEecCCc
Q 045940 97 MARRADAFIALPGGY 111 (189)
Q Consensus 97 m~~~sda~I~lpGG~ 111 (189)
-++.+|++|++...-
T Consensus 294 ~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 294 GIDEADAFIALTNDD 308 (453)
T ss_pred CCccCCEEEECCCCc
Confidence 567789999888764
No 324
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=30.32 E-value=1e+02 Score=24.99 Aligned_cols=11 Identities=0% Similarity=-0.136 Sum_probs=5.5
Q ss_pred CHHHHHHHhhc
Q 045940 171 NARDLLQGMEV 181 (189)
Q Consensus 171 ~~ee~~~~l~~ 181 (189)
+++++.+.+..
T Consensus 206 ~~~dvA~~~~~ 216 (251)
T PLN00141 206 SRDQVAEVAVE 216 (251)
T ss_pred cHHHHHHHHHH
Confidence 45555555443
No 325
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=30.30 E-value=62 Score=25.50 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=22.7
Q ss_pred HhcCeeEEecCC-----cchHHHHHHHHHHHhcC-CCCCcEEEEeCC
Q 045940 99 RRADAFIALPGG-----YGTMEELLEMITWSQLG-IHDKPVGVLNVD 139 (189)
Q Consensus 99 ~~sda~I~lpGG-----~GTL~El~~~~~~~~~~-~~~kPiill~~~ 139 (189)
..+|.+|+.+|| ..+.......+.+...- ..++|+++++.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 467778887775 22222221112222222 478999999764
No 326
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=30.13 E-value=1.3e+02 Score=22.02 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhcC--CCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCC--HHHHHHHhhc
Q 045940 113 TMEELLEMITWSQLG--IHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKN--ARDLLQGMEV 181 (189)
Q Consensus 113 TL~El~~~~~~~~~~--~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~--~ee~~~~l~~ 181 (189)
+++-+-.++...|.. ..-+-+.++|...+++.++..+.. |++++..+.|.++++ .+++.+.+.+
T Consensus 79 ~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~~L~~~i~~ 146 (158)
T smart00516 79 DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKP-----FLDEKTREKIRFVGNDSKEELLEYIDP 146 (158)
T ss_pred cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHh-----hcChhhhccEEEeCCCCHHHHHhhCCH
Confidence 344444444444433 234788899988666666665543 566777788888887 8888887743
No 327
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=29.93 E-value=67 Score=27.39 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=22.4
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCeEEEEec
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIP 68 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p 68 (189)
...+|+|+|..|++ +..-|+..|.+++.+..
T Consensus 167 ~~VlV~G~g~iG~~--a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSAHL--TAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHHHH--HHHHHHHCCCeEEEEeC
Confidence 46788997666654 55678888888888754
No 328
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=29.90 E-value=80 Score=26.82 Aligned_cols=47 Identities=23% Similarity=0.426 Sum_probs=0.0
Q ss_pred eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC--CCchHHH-HHHHHHHHc
Q 045940 104 FIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD--GYYDSLL-RFFDKGVEE 155 (189)
Q Consensus 104 ~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~--g~~~~l~-~~l~~~~~~ 155 (189)
+|+.-||=||+-....... ...+||+=+|.+ ||+.++. +.+++..++
T Consensus 58 ~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~G~lGFLt~~~~~~~~~~~~~ 107 (281)
T COG0061 58 LIVVLGGDGTLLRAARLLA-----RLDIPVLGINLGHLGFLTDFEPDELEKALDA 107 (281)
T ss_pred EEEEeCCcHHHHHHHHHhc-----cCCCCEEEEeCCCcccccccCHHHHHHHHHH
No 329
>PRK08265 short chain dehydrogenase; Provisional
Probab=29.86 E-value=1.1e+02 Score=24.76 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCC--eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 1 MGKF--KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 1 ~~~~--~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|.++ +++-|.|+++ -..+++++.|+++|+.|+
T Consensus 1 m~~~~~k~vlItGas~--------gIG~~ia~~l~~~G~~V~ 34 (261)
T PRK08265 1 MIGLAGKVAIVTGGAT--------LIGAAVARALVAAGARVA 34 (261)
T ss_pred CCCCCCCEEEEECCCC--------hHHHHHHHHHHHCCCEEE
No 330
>PRK09004 FMN-binding protein MioC; Provisional
Probab=29.50 E-value=1.3e+02 Score=22.69 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=4.5
Q ss_pred HhcCCeEEE
Q 045940 57 FDGGCHVLG 65 (189)
Q Consensus 57 ~~~gg~viG 65 (189)
.+.|+..++
T Consensus 110 ~~lGa~~v~ 118 (146)
T PRK09004 110 KAKGAKQIG 118 (146)
T ss_pred HHcCCeEee
Confidence 345655544
No 331
>PRK12939 short chain dehydrogenase; Provisional
Probab=29.44 E-value=1.2e+02 Score=24.02 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCC--eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 1 MGKF--KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 1 ~~~~--~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|+.+ ++|.|.|+++ -....+++.|+++|+.++
T Consensus 2 ~~~~~~~~vlItGa~g--------~iG~~la~~l~~~G~~v~ 35 (250)
T PRK12939 2 ASNLAGKRALVTGAAR--------GLGAAFAEALAEAGATVA 35 (250)
T ss_pred CCCCCCCEEEEeCCCC--------hHHHHHHHHHHHcCCEEE
No 332
>PRK09291 short chain dehydrogenase; Provisional
Probab=29.23 E-value=90 Score=24.90 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGG 44 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg 44 (189)
++|.|.|+++ -..+.+.+.|+++|+.++....
T Consensus 3 ~~vlVtGasg--------~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGS--------GFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHHCCCEEEEEeC
Confidence 4677777765 2344667777778888776544
No 333
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=29.16 E-value=2.7e+02 Score=21.47 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=26.1
Q ss_pred HHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCc
Q 045940 97 MARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYY 142 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~ 142 (189)
+.+...+.|+|+||. |..++++.++-......-+.+.++..+.+|
T Consensus 16 ~~~~~~~~i~lsgGs-Tp~~~y~~L~~~~~~~~w~~v~~f~~DEr~ 60 (169)
T cd00458 16 LEEKDDMVIGLGTGS-TPAYFYKLLGEKLKRGEISDIVGFPTDERY 60 (169)
T ss_pred HHhCCCEEEEECCCc-cHHHHHHHHHhhhhhCCccceEEEECcccc
Confidence 334567889999984 555566665432211113567777776565
No 334
>PRK14071 6-phosphofructokinase; Provisional
Probab=29.10 E-value=1.9e+02 Score=25.60 Aligned_cols=42 Identities=17% Similarity=0.408 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 24 AALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 24 ~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
.-.++.+.|-++++. |++=||. |-|..+.+=+.+.+-++|||
T Consensus 95 ~~~~~~~~l~~~~Id~Li~IGGd-gS~~~a~~L~~~~~i~vIgi 137 (360)
T PRK14071 95 RSQEIIDGYHSLGLDALIGIGGD-GSLAILRRLAQQGGINLVGI 137 (360)
T ss_pred HHHHHHHHHHHcCCCEEEEECCh-hHHHHHHHHHHhcCCcEEEe
Confidence 345677778888776 6666777 99987766554447788998
No 335
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=29.07 E-value=1.2e+02 Score=25.38 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=25.3
Q ss_pred HHHHHhcCeeEEec--CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 045940 95 AEMARRADAFIALP--GGYGTMEELLEMITWSQLGIHDKPVGVLNVDG 140 (189)
Q Consensus 95 ~~m~~~sda~I~lp--GG~GTL~El~~~~~~~~~~~~~kPiill~~~g 140 (189)
..+...||++|.-. .|+|.- +.|++. .++|++..+..+
T Consensus 265 ~~~~~~~d~~v~ps~~E~~~~~--~~EAma------~g~PvI~s~~~~ 304 (371)
T cd04962 265 EELLSIADLFLLPSEKESFGLA--ALEAMA------CGVPVVASNAGG 304 (371)
T ss_pred HHHHHhcCEEEeCCCcCCCccH--HHHHHH------cCCCEEEeCCCC
Confidence 34567899987553 345533 566663 789999987654
No 336
>PRK07035 short chain dehydrogenase; Provisional
Probab=28.95 E-value=85 Score=25.09 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=7.5
Q ss_pred HHHHHHHHCCCeEEE
Q 045940 27 DLATQLVERKINLVY 41 (189)
Q Consensus 27 ~lg~~la~~g~~lv~ 41 (189)
.+.+.|+++|+.|+-
T Consensus 23 ~l~~~l~~~G~~Vi~ 37 (252)
T PRK07035 23 AIAKLLAQQGAHVIV 37 (252)
T ss_pred HHHHHHHHCCCEEEE
Confidence 444455555555443
No 337
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=28.86 E-value=3.7e+02 Score=23.03 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=20.5
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCC-eEEEEec
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGC-HVLGVIP 68 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg-~viGv~p 68 (189)
...+|.|+|..|+| +..-|+..|. +++.+..
T Consensus 193 ~~VlV~G~G~vG~~--a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 193 QSVAVVGLGGVGLS--ALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCCcEEEEcC
Confidence 45688887666665 4556677787 5777743
No 338
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=28.74 E-value=1.6e+02 Score=22.75 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=7.5
Q ss_pred CCCcEEEEeC
Q 045940 129 HDKPVGVLNV 138 (189)
Q Consensus 129 ~~kPiill~~ 138 (189)
++.|++-+|.
T Consensus 130 ~~~~viAiDi 139 (169)
T PF03853_consen 130 SRAPVIAIDI 139 (169)
T ss_dssp HCSEEEEESS
T ss_pred cCCcEEEecC
Confidence 4788888875
No 339
>PRK08339 short chain dehydrogenase; Provisional
Probab=28.74 E-value=87 Score=25.59 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=7.2
Q ss_pred HHHHHHHHCCCeEEE
Q 045940 27 DLATQLVERKINLVY 41 (189)
Q Consensus 27 ~lg~~la~~g~~lv~ 41 (189)
++++.|+++|+.|+.
T Consensus 23 aia~~l~~~G~~V~~ 37 (263)
T PRK08339 23 GVARVLARAGADVIL 37 (263)
T ss_pred HHHHHHHHCCCEEEE
Confidence 344445555555443
No 340
>PLN02884 6-phosphofructokinase
Probab=28.64 E-value=1.7e+02 Score=26.56 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=36.0
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHH---hcC--CeEEEE
Q 045940 8 CVFCGSNSGNRKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIF---DGG--CHVLGV 66 (189)
Q Consensus 8 ~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~---~~g--g~viGv 66 (189)
++.|+||... . -.++.+.|-++|+. |++=||. |-|..+.+=+. +.| -.||||
T Consensus 121 t~LGtsR~~~---~---~~~i~~~L~~~~Id~LivIGGd-gS~~~a~~L~~~~~~~g~~i~vIGI 178 (411)
T PLN02884 121 SLLGVSRGGA---K---TSDIVDSIEARGINMLFVLGGN-GTHAGANAIHNECRKRKMKVSVVGV 178 (411)
T ss_pred ceeccCCCCc---c---HHHHHHHHHHcCCCEEEEECCc-hHHHHHHHHHHHHHHcCCCceEEec
Confidence 5677887653 2 34566788888776 6666778 99988876444 356 678888
No 341
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=28.63 E-value=1.9e+02 Score=22.99 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=24.8
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
.+.+|+.+||+=.-+|-...+. ....+|.|+.+
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~------~~g~vv~L~~~ 104 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLK------KRGIVVYLDAP 104 (172)
T ss_pred CCeEEECCCccccCHHHHHHHH------hCCeEEEEeCC
Confidence 3699999999999999887773 23366677654
No 342
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=28.63 E-value=3.6e+02 Score=22.74 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=20.1
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCC-eEEEEe
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGC-HVLGVI 67 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg-~viGv~ 67 (189)
...+|+|+| ++=.++.+-|+..|. +++.+.
T Consensus 174 ~~vlI~g~g--~vG~~a~q~a~~~G~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAG--PIGLLTILALKAAGASKIIVSE 204 (351)
T ss_pred CEEEEECCC--HHHHHHHHHHHHcCCCEEEEEC
Confidence 456888754 455556777888887 677764
No 343
>PRK12367 short chain dehydrogenase; Provisional
Probab=28.59 E-value=91 Score=25.50 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=25.2
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
...|||||+. |+=.+.++...+.|..|+.+.
T Consensus 15 k~~lITGas~-gIG~ala~~l~~~G~~Vi~~~ 45 (245)
T PRK12367 15 KRIGITGASG-ALGKALTKAFRAKGAKVIGLT 45 (245)
T ss_pred CEEEEEcCCc-HHHHHHHHHHHHCCCEEEEEE
Confidence 3568999887 888888998888888887764
No 344
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.43 E-value=1.1e+02 Score=25.58 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|.++++|+|+|....+ ..++..++++|+.|+
T Consensus 1 ~~~~~kI~vIGaG~mG---------~~iA~~la~~G~~V~ 31 (292)
T PRK07530 1 MMAIKKVGVIGAGQMG---------NGIAHVCALAGYDVL 31 (292)
T ss_pred CCCCCEEEEECCcHHH---------HHHHHHHHHCCCeEE
Confidence 5678999999987442 346667788888755
No 345
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=28.34 E-value=46 Score=28.27 Aligned_cols=30 Identities=40% Similarity=0.657 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCeEEEcCCCCChhHHHHHHHHh
Q 045940 27 DLATQLVERKINLVYGGGSVGLMGLVSQTIFD 58 (189)
Q Consensus 27 ~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~ 58 (189)
+|+|.|+.+...||.+|| |.=+++.-|+++
T Consensus 1 rlar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 1 RLARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred ChhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 478889888999998886 566666666654
No 346
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=28.31 E-value=4e+02 Score=23.24 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=25.2
Q ss_pred CCCeEEEcCCCCChhHHHHHHHHhcC--CeEEEEecC
Q 045940 35 RKINLVYGGGSVGLMGLVSQTIFDGG--CHVLGVIPK 69 (189)
Q Consensus 35 ~g~~lv~GGg~~GlM~a~a~ga~~~g--g~viGv~p~ 69 (189)
-.+.++.-|+. |+..-++.+.++.. -+++||-|.
T Consensus 149 ~D~vv~~vG~G-g~~aGi~~~~k~~~p~~kvigVe~~ 184 (380)
T TIGR01127 149 VDTVIVPVGGG-GLISGVASAAKQINPNVKVIGVEAE 184 (380)
T ss_pred CCEEEEEeChH-HHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 35656666665 99988999888754 489999774
No 347
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=28.29 E-value=82 Score=22.65 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCC--CCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCC-HHHHHHHhhc
Q 045940 115 EELLEMITWSQLGI--HDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKN-ARDLLQGMEV 181 (189)
Q Consensus 115 ~El~~~~~~~~~~~--~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~-~ee~~~~l~~ 181 (189)
.-+..++...+-.. .-+.+.++|..-+...++..+.. |++++..+.+.++++ .+++.+.+..
T Consensus 83 ~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~L~~~i~~ 147 (157)
T cd00170 83 SLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKP-----FLSEKTRKKIVFLGSDKEELLKYIDK 147 (157)
T ss_pred HHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHH-----hcCHhhhhhEEEecCCHHHHHhhCCh
Confidence 34444444444432 34788899987555555555543 677777888999998 8888887753
No 348
>PRK06398 aldose dehydrogenase; Validated
Probab=28.28 E-value=1.3e+02 Score=24.31 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCCC--eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 1 MGKF--KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 1 ~~~~--~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
|.++ ++|-|.|+++ -..+++++.|+++|+.|+.
T Consensus 1 ~~~l~gk~vlItGas~--------gIG~~ia~~l~~~G~~Vi~ 35 (258)
T PRK06398 1 DLGLKDKVAIVTGGSQ--------GIGKAVVNRLKEEGSNVIN 35 (258)
T ss_pred CCCCCCCEEEEECCCc--------hHHHHHHHHHHHCCCeEEE
No 349
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=28.18 E-value=2.6e+02 Score=24.58 Aligned_cols=61 Identities=11% Similarity=0.039 Sum_probs=40.8
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
..++|+|+++++..++. ...+++=+.+.+.|+.|+.=+-+..-+-..+..++.....+|=+
T Consensus 158 nak~Igv~Y~p~E~ns~---~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~ 218 (322)
T COG2984 158 NAKSIGVLYNPGEANSV---SLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYI 218 (322)
T ss_pred CCeeEEEEeCCCCcccH---HHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEE
Confidence 45789999988765444 34446777777889998887776566666666666644454444
No 350
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=28.18 E-value=1.6e+02 Score=22.16 Aligned_cols=58 Identities=22% Similarity=0.172 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE------cCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY------GGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~------GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
|.|+|.|.+..| =...++.|.+.|.++|+.+.+ |.......+.=..-. ++|...+.+.
T Consensus 1 pvv~VvG~~~sG----KTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~-~aGA~~~~~~ 64 (140)
T PF03205_consen 1 PVVQVVGPKNSG----KTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRF-KAGADVVLVS 64 (140)
T ss_dssp -EEEEEESTTSS----HHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHH-HCT-SEEEEE
T ss_pred CEEEEECCCCCC----HHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccc-cccceEEEEE
Confidence 578888888765 235666888888888887662 333333444333334 6666555553
No 351
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=28.15 E-value=2.4e+02 Score=20.58 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=19.4
Q ss_pred CeeEEecCCcchHHHH---HHHHHHH-hcCCCCCcEEEEeCC
Q 045940 102 DAFIALPGGYGTMEEL---LEMITWS-QLGIHDKPVGVLNVD 139 (189)
Q Consensus 102 da~I~lpGG~GTL~El---~~~~~~~-~~~~~~kPiill~~~ 139 (189)
|+ |++|||.+....+ -....|. +...+.|||..+...
T Consensus 64 D~-liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G 104 (142)
T cd03132 64 DA-VVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEG 104 (142)
T ss_pred CE-EEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCch
Confidence 55 5567887764321 1112222 222578999876543
No 352
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=28.06 E-value=67 Score=23.57 Aligned_cols=36 Identities=33% Similarity=0.297 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
++.+|||..+..-.. |...++.+-+.|.+.|..++.
T Consensus 88 ~~~avfg~Gd~~~~~-f~~~~k~l~~~l~~~G~~~~~ 123 (143)
T PF00258_consen 88 KKYAVFGLGDSGYGG-FCAAAKKLDERLEELGAKRVG 123 (143)
T ss_dssp CEEEEEEEEETTSST-TTHHHHHHHHHHHHTTEEEES
T ss_pred ceeeeeecCCccchh-hhhHHHHHHHHHHHCCCEEEE
Confidence 455565332222122 667777777777777776664
No 353
>PRK12746 short chain dehydrogenase; Provisional
Probab=28.06 E-value=1.2e+02 Score=24.10 Aligned_cols=30 Identities=17% Similarity=0.061 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYG 42 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~G 42 (189)
++|.|.|+++. ....+.+.|+++|+.++..
T Consensus 7 ~~ilItGasg~--------iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 7 KVALVTGASRG--------IGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCEEEEE
Confidence 57777777642 3345666667778877543
No 354
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=28.05 E-value=4.4e+02 Score=23.55 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=60.9
Q ss_pred EcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEe--c-CCHHHHHHHHHHh--cCeeE-EecCCcchH
Q 045940 41 YGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLI--V-SDMHERKAEMARR--ADAFI-ALPGGYGTM 114 (189)
Q Consensus 41 ~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~--~-~~~~~R~~~m~~~--sda~I-~lpGG~GTL 114 (189)
-+.|. |+.-+..+.....|+. | .|+++ +-- . +.+..=-+.+.+. .|+++ .++||+.-.
T Consensus 262 i~nGa-Gl~m~t~D~i~~~gg~-----p---------aNPlD-lgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~ 325 (392)
T PRK14046 262 IVNGA-GLAMATMDMIKLAGGE-----P---------ANFLD-VGGGASPERVAKAFRLVLSDRNVKAILVNIFAGINRC 325 (392)
T ss_pred EeCCc-cHHHHHHHHHHhcCCC-----C---------cCCEE-ecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCH
Confidence 34555 8888889988888874 1 22221 110 1 1111111222222 35544 446777766
Q ss_pred HHHHHHHHHHhcC-CCCCcEEEEeCCC-CchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHhhc
Q 045940 115 EELLEMITWSQLG-IHDKPVGVLNVDG-YYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGMEV 181 (189)
Q Consensus 115 ~El~~~~~~~~~~-~~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 181 (189)
+++.+.+.-..-. ..+||+++ ...| -.+..... +.+.| -.++..+|.+|+++...+
T Consensus 326 ~~vA~~Ii~a~~~~~~~kPvvv-~l~G~~~e~~~~i---L~~~G-------ipvf~~~~~~~a~~~~v~ 383 (392)
T PRK14046 326 DWVAEGVVQAAREVGIDVPLVV-RLAGTNVEEGRKI---LAESG-------LPIITADTLAEAAEKAVE 383 (392)
T ss_pred HHHHHHHHHHHHhcCCCCcEEE-EcCCCCHHHHHHH---HHHcC-------CCeeecCCHHHHHHHHHH
Confidence 8888776543322 26789954 3333 22222222 23323 246888999999988754
No 355
>PRK05867 short chain dehydrogenase; Provisional
Probab=28.02 E-value=3.1e+02 Score=21.82 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
+++-|.|+++ -..+++.+.|+++|+.|+..+....-.+...+...+.++++..+
T Consensus 10 k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (253)
T PRK05867 10 KRALITGAST--------GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPV 63 (253)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
No 356
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.86 E-value=93 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=13.8
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
.+|+||.. |+=.++++...+.|-+++.+
T Consensus 8 ~lItG~~g-~iG~~~a~~l~~~G~~vi~~ 35 (253)
T PRK08217 8 IVITGGAQ-GLGRAMAEYLAQKGAKLALI 35 (253)
T ss_pred EEEECCCc-hHHHHHHHHHHHCCCEEEEE
Confidence 35555544 55555555555544444444
No 357
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.85 E-value=91 Score=25.54 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=27.0
Q ss_pred CeEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 37 INLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
..+|||.|. |+=.+..+.-.++|.+||.+.
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEEe
Confidence 458999998 999999999999999999993
No 358
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.74 E-value=90 Score=25.21 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=10.2
Q ss_pred HHHHHHHHHHCCCeEEEc
Q 045940 25 ALDLATQLVERKINLVYG 42 (189)
Q Consensus 25 A~~lg~~la~~g~~lv~G 42 (189)
.+.+++.|+++|+.|+.-
T Consensus 21 G~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 21 GQGMAIGLAKAGADIVGV 38 (251)
T ss_pred HHHHHHHHHHCCCEEEEe
Confidence 335555666666666543
No 359
>PRK08177 short chain dehydrogenase; Provisional
Probab=27.73 E-value=1.1e+02 Score=24.04 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=18.2
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGG 43 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GG 43 (189)
|++|-|.|+++ -..+.+.+.|+++|+.|+.-+
T Consensus 1 ~k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 1 KRTALIIGASR--------GLGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CCEEEEeCCCc--------hHHHHHHHHHHhCCCEEEEEe
Confidence 35566666654 233456666666777665433
No 360
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=27.66 E-value=2.9e+02 Score=24.13 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=19.2
Q ss_pred CeeEEecCCcchHHHHHHHHHH
Q 045940 102 DAFIALPGGYGTMEELLEMITW 123 (189)
Q Consensus 102 da~I~lpGG~GTL~El~~~~~~ 123 (189)
-..|.+|--.|.|.++.+.+..
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~ 328 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAE 328 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhc
Confidence 5688999999999999998863
No 361
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=27.61 E-value=2.9e+02 Score=21.28 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCcc--ccc--cccCCCCc-e----EEecCCHHHHHHH
Q 045940 26 LDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKAL--VPI--EISGQTVG-D----VLIVSDMHERKAE 96 (189)
Q Consensus 26 ~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~--~~~--e~~~~~~~-~----~~~~~~~~~R~~~ 96 (189)
.++-+.|+..+..++..||. =++...++..+...|.+|-+-.+.. ..+ .....++. + -....-+..|..+
T Consensus 64 ~~~l~~l~~~~~~vi~~ggg-~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~ 142 (172)
T PRK05057 64 EKVINELTEKQGIVLATGGG-SVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPL 142 (172)
T ss_pred HHHHHHHHhCCCEEEEcCCc-hhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34444566555555544443 4666667778877887777622111 000 11112211 0 0111223677766
Q ss_pred HHHhcCeeEEecCCcchHHHHHHHH
Q 045940 97 MARRADAFIALPGGYGTMEELLEMI 121 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~~ 121 (189)
--+.||..|- ..--|.+|+.+.+
T Consensus 143 Y~~~Ad~~id--t~~~s~~ei~~~i 165 (172)
T PRK05057 143 YEEIADVTIR--TDDQSAKVVANQI 165 (172)
T ss_pred HHhhCCEEEE--CCCCCHHHHHHHH
Confidence 6666886654 4446888887765
No 362
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=27.54 E-value=84 Score=27.35 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLV 33 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la 33 (189)
|+|+|||||=++....+...|++..+.+.
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~ 29 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLK 29 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhC
Confidence 36999999998888888888887776654
No 363
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.52 E-value=1.2e+02 Score=24.29 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=20.8
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
+.....|++|+.+.....+.++...+. ..++|+++++.
T Consensus 51 ~~~~~~Dgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (282)
T cd06318 51 LLTRGVNVLIINPVDPEGLVPAVAAAK-----AAGVPVVVVDS 88 (282)
T ss_pred HHHcCCCEEEEecCCccchHHHHHHHH-----HCCCCEEEecC
Confidence 344557888887654433333322221 35677777764
No 364
>KOG4321 consensus Predicted phosphate acyltransferases [Lipid transport and metabolism]
Probab=27.43 E-value=59 Score=26.27 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCeeEEecCCcchHHHHHHH
Q 045940 91 HERKAEMARRADAFIALPGGYGTMEELLEM 120 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpGG~GTL~El~~~ 120 (189)
-.|.+++...+|-|++---|+||.+|.|.+
T Consensus 68 lqrerliytigdrflfklpgwgtiseafhv 97 (279)
T KOG4321|consen 68 LQRERLIYTIGDRFLFKLPGWGTISEAFHV 97 (279)
T ss_pred HhhhhheEeecceeEEeCCCccchhhhhcc
Confidence 688888889999998877789999999865
No 365
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.43 E-value=1.5e+02 Score=23.84 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=23.0
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
++....|++|+.|.....+.+....+. ..+.|+++++.
T Consensus 56 l~~~~vDgiii~~~~~~~~~~~i~~~~-----~~gIpvV~~d~ 93 (274)
T cd06311 56 LINRKIDALVILPFESAPLTQPVAKAK-----KAGIFVVVVDR 93 (274)
T ss_pred HHHcCCCEEEEeCCCchhhHHHHHHHH-----HCCCeEEEEcC
Confidence 333468999998865444445443331 35678888764
No 366
>PRK05723 flavodoxin; Provisional
Probab=27.38 E-value=1.3e+02 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
+++|||-....-.+.|...++.+=+.|++.|-.-|
T Consensus 86 ~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv 120 (151)
T PRK05723 86 PGAVIALGDSSYGDTFCGGGEQMRELFAELGVREV 120 (151)
T ss_pred EEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEe
Confidence 55666544332224456666666666666555444
No 367
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=27.33 E-value=39 Score=30.41 Aligned_cols=26 Identities=35% Similarity=0.689 Sum_probs=15.1
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCCeEEE
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGCHVLG 65 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg~viG 65 (189)
.+|-|||++|+|-|..- .+.|-+|+=
T Consensus 3 viIIGgGaAGl~aA~~a--a~~g~~V~v 28 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA--AEKGARVLV 28 (409)
T ss_dssp EEEE--SHHHHHHHHHH--HHTT--EEE
T ss_pred EEEECCCHHHHHHHHHH--HhCCCCEEE
Confidence 46779999999988876 334444433
No 368
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=27.30 E-value=2.7e+02 Score=22.48 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=28.1
Q ss_pred HHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCc
Q 045940 97 MARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYY 142 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~ 142 (189)
+.+...+.|+|+||. |...+++.+.-.. ...-+.+.++..+.+|
T Consensus 19 i~~~~~~~l~lsGGs-tp~~~y~~L~~~~-~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 19 IAKRGRFSLALSGGS-TPKPLYELLAAAP-ALDWSKVHVFLGDERC 62 (219)
T ss_pred HHhcCeEEEEECCCc-cHHHHHHHhcccc-CCCCceEEEEEeeccc
Confidence 344678999999996 4447777775433 2333566666665565
No 369
>PRK00625 shikimate kinase; Provisional
Probab=27.26 E-value=2.2e+02 Score=22.19 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=39.8
Q ss_pred HHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecC--ccccccccCCCCce----E-EecCCHHHHHHHHHH
Q 045940 27 DLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPK--ALVPIEISGQTVGD----V-LIVSDMHERKAEMAR 99 (189)
Q Consensus 27 ~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~--~~~~~e~~~~~~~~----~-~~~~~~~~R~~~m~~ 99 (189)
++-+.+...+..|.+|||. ++..-+...+..+|.|+-+-.. ....+ ....++.+ . ....-+..|....-+
T Consensus 65 ~~l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~R-l~~R~~~~~~~~~~~~~~ll~~R~~~Y~~ 141 (173)
T PRK00625 65 LALTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQR-LQKRGLPERLKHAPSLEEILSQRIDRMRS 141 (173)
T ss_pred HHHHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHH-HhcCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence 3445555566667788776 4444455567777877766321 11110 01111110 0 012224788888777
Q ss_pred hcCeeEE
Q 045940 100 RADAFIA 106 (189)
Q Consensus 100 ~sda~I~ 106 (189)
.||..|-
T Consensus 142 ~ad~~i~ 148 (173)
T PRK00625 142 IADYIFS 148 (173)
T ss_pred HCCEEEe
Confidence 7988764
No 370
>PRK05866 short chain dehydrogenase; Provisional
Probab=27.19 E-value=2.7e+02 Score=23.19 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
++|-|.|+++ -..+.+++.|+++|+.|+.-+....-.+...+...+.++.+..+
T Consensus 41 k~vlItGasg--------gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~ 94 (293)
T PRK05866 41 KRILLTGASS--------GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94 (293)
T ss_pred CEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
No 371
>PRK11096 ansB L-asparaginase II; Provisional
Probab=27.11 E-value=3.4e+02 Score=23.98 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=33.4
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC-----CCCchHHHHHHH
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV-----DGYYDSLLRFFD 150 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~-----~g~~~~l~~~l~ 150 (189)
..|+|||.-| .-||+|....+.+. + ..+||||+.+. .-..|...++.+
T Consensus 100 ~~dGiVVtHG-TDTme~tA~~Ls~~-~-~~~kPVVlTGAmrP~~~~~sDg~~NL~~ 152 (347)
T PRK11096 100 KTDGFVITHG-TDTMEETAYFLDLT-V-KCDKPVVLVGAMRPSTAMSADGPLNLYN 152 (347)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHh-c-cCCCCEEEeCCCCCCCCcCCchHHHHHH
Confidence 4677777765 89999999988875 3 35899999873 224455555444
No 372
>PRK07023 short chain dehydrogenase; Provisional
Probab=26.95 E-value=1.1e+02 Score=24.19 Aligned_cols=30 Identities=27% Similarity=0.176 Sum_probs=17.0
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
|++|-|.|+++ -..+.+.+.|+++|+.++.
T Consensus 1 ~~~vlItGasg--------giG~~ia~~l~~~G~~v~~ 30 (243)
T PRK07023 1 AVRAIVTGHSR--------GLGAALAEQLLQPGIAVLG 30 (243)
T ss_pred CceEEEecCCc--------chHHHHHHHHHhCCCEEEE
Confidence 34566666654 2334555566666766554
No 373
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.94 E-value=91 Score=26.60 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=16.9
Q ss_pred CeEEEcCC-CCChhHHHHHHHHhcCCeEEE
Q 045940 37 INLVYGGG-SVGLMGLVSQTIFDGGCHVLG 65 (189)
Q Consensus 37 ~~lv~GGg-~~GlM~a~a~ga~~~gg~viG 65 (189)
..||||+| ..|+=.+.++...+.|.+|+-
T Consensus 10 ~alITGa~~~~GIG~a~A~~la~~Ga~Vvv 39 (299)
T PRK06300 10 IAFIAGIGDDQGYGWGIAKALAEAGATILV 39 (299)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCCEEEE
Confidence 34666665 136666666666666665543
No 374
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=26.91 E-value=1.6e+02 Score=23.92 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=19.5
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCCC--eEEEcCCC
Q 045940 10 FCGSNSGNRKIFSDAALDLATQLVERKI--NLVYGGGS 45 (189)
Q Consensus 10 ~g~s~~~~~~~~~~~A~~lg~~la~~g~--~lv~GGg~ 45 (189)
|||+.....+...+.++.+.+. .+.|+ .||.||+.
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l-~~~g~~~viV~sg~g 42 (239)
T cd04246 6 FGGTSVADIERIKRVAERIKKA-VKKGYQVVVVVSAMG 42 (239)
T ss_pred ECccccCCHHHHHHHHHHHHHH-HHcCCCEEEEECCCC
Confidence 7888766434445555555443 33444 46677644
No 375
>PRK09072 short chain dehydrogenase; Provisional
Probab=26.91 E-value=99 Score=24.97 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=12.5
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
.||+||.. |+=.++++...+.|..|+.+
T Consensus 8 vlItG~s~-~iG~~ia~~l~~~G~~V~~~ 35 (263)
T PRK09072 8 VLLTGASG-GIGQALAEALAAAGARLLLV 35 (263)
T ss_pred EEEECCCc-hHHHHHHHHHHHCCCEEEEE
Confidence 34444443 44444444444444444433
No 376
>PRK08589 short chain dehydrogenase; Validated
Probab=26.85 E-value=96 Score=25.38 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=27.2
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
...|||||.. |+=.++++...+.|.+|+.+-
T Consensus 7 k~vlItGas~-gIG~aia~~l~~~G~~vi~~~ 37 (272)
T PRK08589 7 KVAVITGAST-GIGQASAIALAQEGAYVLAVD 37 (272)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCCEEEEEe
Confidence 4679999988 999999999999999988874
No 377
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=26.84 E-value=1.1e+02 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=28.7
Q ss_pred HHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 95 AEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 95 ~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
..++..||++++|+-..=+++-.-.+.. ....++||.++|..
T Consensus 241 ~~~v~e~dg~LvlGsSL~v~Sg~r~i~~---a~~~k~pi~IvNIG 282 (305)
T KOG2683|consen 241 MEKVKECDGFLVLGSSLMVLSGFRFIRH---AHEKKKPIAIVNIG 282 (305)
T ss_pred HHHHhccCceEEechhHHHHHHHHHHHH---HHhhcCcEEEEecC
Confidence 3467789999999876666654433321 11357999999985
No 378
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.80 E-value=1.8e+02 Score=24.96 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=32.6
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC--CCch-----HHHHHHHHHHHcCC
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD--GYYD-----SLLRFFDKGVEEGF 157 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~--g~~~-----~l~~~l~~~~~~g~ 157 (189)
.+|.+|+ -||=||+-.....+. .+++||+=+|.. ||.. .+.+.++++.+..|
T Consensus 63 ~~d~vi~-lGGDGT~L~aa~~~~-----~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 63 QADLAIV-VGGDGNMLGAARVLA-----RYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred CCCEEEE-ECCcHHHHHHHHHhc-----CCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCc
Confidence 4565555 577999976655442 357899877763 5664 45556666655444
No 379
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=26.76 E-value=1.8e+02 Score=24.29 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=22.2
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcCCCCC-cEEEEeC
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLGIHDK-PVGVLNV 138 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~~~~k-Piill~~ 138 (189)
.| +|+.-||=||+.|+...+.. ...+ |+.++..
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~~----~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALIQ----LDDIPALGILPL 91 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHhc----CCCCCcEEEEcC
Confidence 45 56678999999999877631 1233 6767754
No 380
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=26.73 E-value=73 Score=27.23 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCeeEEecCCcchHHHHHHHHH
Q 045940 92 ERKAEMARRADAFIALPGGYGTMEELLEMIT 122 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpGG~GTL~El~~~~~ 122 (189)
.--+++.+.++.-|++.+|+||-+....++.
T Consensus 179 ~~l~~i~e~~~vpVivdAGIgt~sDa~~AmE 209 (267)
T CHL00162 179 LNLQIIIENAKIPVIIDAGIGTPSEASQAME 209 (267)
T ss_pred HHHHHHHHcCCCcEEEeCCcCCHHHHHHHHH
Confidence 3446778889999999999999999988885
No 381
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=26.67 E-value=3.6e+02 Score=23.56 Aligned_cols=91 Identities=16% Similarity=0.022 Sum_probs=48.7
Q ss_pred CHHHHHHHHHH--hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHH---HHHcCCCCcc--
Q 045940 89 DMHERKAEMAR--RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDK---GVEEGFIKSS-- 161 (189)
Q Consensus 89 ~~~~R~~~m~~--~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~---~~~~g~i~~~-- 161 (189)
++.+=-+.+.+ ..++++...=+.|+.+|-...|- .....+|||+.+.. |-+.+.-..+.| +.+.+.=+.+
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi--~~~~~~KPVVa~~a-Grsap~G~r~gHaGAi~~~~~G~~~~k 287 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWI--KNNPIKKPVVSFIA-GITAPPGRRMGHAGAIISGGKGTAPGK 287 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHH--HhhcCCCcEEEEEe-cCCCCCCCcccchhhhhccCCCCHHHH
Confidence 55555555554 35577777777778765544332 21235799998854 344321111111 1111100000
Q ss_pred ----ccCcEEEeCCHHHHHHHhhcC
Q 045940 162 ----ARNIVISAKNARDLLQGMEVP 182 (189)
Q Consensus 162 ----~~~~i~~~~~~ee~~~~l~~~ 182 (189)
...-+.+++|++|+.+.+++.
T Consensus 288 ~aal~qaGv~v~~~~~el~~~~~~~ 312 (317)
T PTZ00187 288 IEALEAAGVRVVKSPAQLGKTMLEV 312 (317)
T ss_pred HHHHHHCCCeEeCCHHHHHHHHHHH
Confidence 123478999999999998763
No 382
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=26.67 E-value=1.2e+02 Score=24.30 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=17.8
Q ss_pred HhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 99 RRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 99 ~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
...|++|+.|.-....++....+. ..+.|+++++.
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~~~-----~~~ipvV~~~~ 89 (270)
T cd06308 55 QGVDLLIISPNEAAPLTPVVEEAY-----RAGIPVILLDR 89 (270)
T ss_pred hCCCEEEEecCchhhchHHHHHHH-----HCCCCEEEeCC
Confidence 456777776643332233332221 24667777753
No 383
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=26.66 E-value=1.5e+02 Score=24.33 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=41.3
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCe-EEEEecCccccccccC-CCCceEEecCCHHHHHHHHH--HhcCeeEEecCCc
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCH-VLGVIPKALVPIEISG-QTVGDVLIVSDMHERKAEMA--RRADAFIALPGGY 111 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~-viGv~p~~~~~~e~~~-~~~~~~~~~~~~~~R~~~m~--~~sda~I~lpGG~ 111 (189)
...+|+|+|+.|++ +++-|+..|.+ ++.+-... ...+... -..+.++......+.-..+. ...|.++=..|+.
T Consensus 122 ~~VlV~G~G~vG~~--~~~~ak~~G~~~Vi~~~~~~-~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 122 RRVLVVGAGMLGLT--AAAAAAAAGAARVVAADPSP-DRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCCEEEEECCCH-HHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 46788888776665 34556677776 66662211 1111110 01122222222211111111 1358888888877
Q ss_pred chHHHHHHHH
Q 045940 112 GTMEELLEMI 121 (189)
Q Consensus 112 GTL~El~~~~ 121 (189)
.++++....+
T Consensus 199 ~~~~~~~~~l 208 (280)
T TIGR03366 199 AAVRACLESL 208 (280)
T ss_pred HHHHHHHHHh
Confidence 7888776665
No 384
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=26.63 E-value=48 Score=22.73 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=17.2
Q ss_pred hcCeeEEecCCcchHHHHHHH
Q 045940 100 RADAFIALPGGYGTMEELLEM 120 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~ 120 (189)
.+.+.|=++||+-||+|+..-
T Consensus 45 ~~~vMVRVGGGW~tL~~~L~k 65 (73)
T PF02187_consen 45 RSHVMVRVGGGWDTLEEYLDK 65 (73)
T ss_dssp TTEEEEEETTEEEEHHHHHHH
T ss_pred CCEEEEEeCCcHHHHHHHhhc
Confidence 356788899999999998753
No 385
>PRK07109 short chain dehydrogenase; Provisional
Probab=26.46 E-value=3.1e+02 Score=23.45 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
+.++|.|.|+++ -..+++.+.|+++|+.|+.-+...--.+...+...+.|+++..+
T Consensus 7 ~~k~vlITGas~--------gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v 62 (334)
T PRK07109 7 GRQVVVITGASA--------GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAV 62 (334)
T ss_pred CCCEEEEECCCC--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE
No 386
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=26.36 E-value=1.4e+02 Score=23.33 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 2 GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 2 ~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
.+++.|+|.+.. .+... .-.|..|+..+|++|..++
T Consensus 15 ~~~kvI~v~s~k-gG~GK--Tt~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 15 AEIKVLLITSVK-PGEGK--STTSANIAVAFAQAGYKTL 50 (204)
T ss_pred CCCcEEEEecCC-CCCCH--HHHHHHHHHHHHhCCCeEE
Confidence 456778876544 33333 3567889999999998766
No 387
>PRK09186 flagellin modification protein A; Provisional
Probab=26.34 E-value=1.5e+02 Score=23.52 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=0.0
Q ss_pred CCCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 1 MGKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 1 ~~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
|.+-++|-|.|+++ ...+.+++.|+++|+.++.
T Consensus 1 ~~~~k~vlItGas~--------giG~~~a~~l~~~g~~v~~ 33 (256)
T PRK09186 1 MLKGKTILITGAGG--------LIGSALVKAILEAGGIVIA 33 (256)
T ss_pred CCCCCEEEEECCCc--------hHHHHHHHHHHHCCCEEEE
No 388
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=26.25 E-value=4.5e+02 Score=23.93 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHC-----CCeEEEcCCCCC---hhHHHHHHHHh--cCCeEEEEecCccccccccCCCCceEEecCCHHHH
Q 045940 24 AALDLATQLVER-----KINLVYGGGSVG---LMGLVSQTIFD--GGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHER 93 (189)
Q Consensus 24 ~A~~lg~~la~~-----g~~lv~GGg~~G---lM~a~a~ga~~--~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R 93 (189)
.|...++.+++. +..++||+-++| ||.|++....+ .+.+|+-+.+..+. .+... .+.. ....+.+.
T Consensus 125 ~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~-~~~~~-~l~~--~~~~~~~~ 200 (450)
T PRK14087 125 QAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA-RKAVD-ILQK--THKEIEQF 200 (450)
T ss_pred HHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHH-HHHH--hhhHHHHH
Confidence 455566666653 335678876656 89888886654 35566655332211 11000 0000 00122211
Q ss_pred HHHHHHhcCeeEE-----ecCCcchHHHHHHHHHHHhcCCCCCcEEEE
Q 045940 94 KAEMARRADAFIA-----LPGGYGTMEELLEMITWSQLGIHDKPVGVL 136 (189)
Q Consensus 94 ~~~m~~~sda~I~-----lpGG~GTL~El~~~~~~~~~~~~~kPiill 136 (189)
+.. ....|.+|+ +.|--.|.+|+|.++...+ ..++++++.
T Consensus 201 ~~~-~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~--~~~k~iIlt 245 (450)
T PRK14087 201 KNE-ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI--ENDKQLFFS 245 (450)
T ss_pred HHH-hccCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCcEEEE
Confidence 111 345776653 4555678899998876544 345777765
No 389
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=26.20 E-value=4.5e+02 Score=23.18 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=38.5
Q ss_pred HHHHHHCCCeEEE---cCCC-CChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCee
Q 045940 29 ATQLVERKINLVY---GGGS-VGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAF 104 (189)
Q Consensus 29 g~~la~~g~~lv~---GGg~-~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~ 104 (189)
-+.+-.++..+|+ |||+ +|.=-.+++-+.+.+-.+++|.|..+. .|. ......-..--..|.+.+|.+
T Consensus 96 r~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~-~Eg-------~~r~~nA~~~l~~L~~~~D~v 167 (349)
T TIGR00065 96 RKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFK-FEG-------LKRRKKAEEGLERLKQAVDTL 167 (349)
T ss_pred HHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccc-------hhhHHHHHHHHHHHHHhCCEE
Confidence 3334334554444 4433 466667778888888889999653211 111 011111133344556777777
Q ss_pred EEec
Q 045940 105 IALP 108 (189)
Q Consensus 105 I~lp 108 (189)
|+++
T Consensus 168 ivid 171 (349)
T TIGR00065 168 IVIP 171 (349)
T ss_pred EEEe
Confidence 7766
No 390
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.14 E-value=2.1e+02 Score=25.48 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=19.3
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCCeEEEEec
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGCHVLGVIP 68 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p 68 (189)
.+|+|+|..|+ ++++...+.|-.|+++-+
T Consensus 8 v~iiG~g~~G~--~~A~~l~~~G~~V~~~d~ 36 (450)
T PRK14106 8 VLVVGAGVSGL--ALAKFLKKLGAKVILTDE 36 (450)
T ss_pred EEEECCCHHHH--HHHHHHHHCCCEEEEEeC
Confidence 46677777553 666767777777777744
No 391
>PRK12361 hypothetical protein; Provisional
Probab=26.14 E-value=1.5e+02 Score=27.44 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=21.8
Q ss_pred eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEE
Q 045940 104 FIALPGGYGTMEELLEMITWSQLGIHDKPVGVL 136 (189)
Q Consensus 104 ~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill 136 (189)
.|+.-||=||++|+...+. .++.|+.++
T Consensus 300 ~Viv~GGDGTl~ev~~~l~-----~~~~~lgii 327 (547)
T PRK12361 300 IVIACGGDGTVTEVASELV-----NTDITLGII 327 (547)
T ss_pred EEEEECCCcHHHHHHHHHh-----cCCCCEEEe
Confidence 5667899999999998773 245677777
No 392
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=26.06 E-value=96 Score=26.32 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=25.6
Q ss_pred HHHHHhcCeeEEec--CCcchHHHHHHHHHHHhcCCCCCcEEEEeCCC
Q 045940 95 AEMARRADAFIALP--GGYGTMEELLEMITWSQLGIHDKPVGVLNVDG 140 (189)
Q Consensus 95 ~~m~~~sda~I~lp--GG~GTL~El~~~~~~~~~~~~~kPiill~~~g 140 (189)
..+...||++|.-. -++|.. +.|+++ .++||+..+..|
T Consensus 275 ~~~~~~aDv~v~ps~~e~~g~~--~lEA~a------~G~PvI~s~~~~ 314 (388)
T TIGR02149 275 VELLSNAEVFVCPSIYEPLGIV--NLEAMA------CGTPVVASATGG 314 (388)
T ss_pred HHHHHhCCEEEeCCccCCCChH--HHHHHH------cCCCEEEeCCCC
Confidence 44568899887642 345544 467764 799999887654
No 393
>PRK07062 short chain dehydrogenase; Provisional
Probab=25.97 E-value=1e+02 Score=24.89 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=10.1
Q ss_pred HHHHHHHHHCCCeEEEcC
Q 045940 26 LDLATQLVERKINLVYGG 43 (189)
Q Consensus 26 ~~lg~~la~~g~~lv~GG 43 (189)
+++++.|+++|+.|+.-+
T Consensus 22 ~~ia~~l~~~G~~V~~~~ 39 (265)
T PRK07062 22 LATVELLLEAGASVAICG 39 (265)
T ss_pred HHHHHHHHHCCCeEEEEe
Confidence 345555566676655443
No 394
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.93 E-value=2.3e+02 Score=23.97 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHHHCC-CeEEEcCCCCChhHHHHHHHHhcCCeEE
Q 045940 18 RKIFSDAALDLATQLVERK-INLVYGGGSVGLMGLVSQTIFDGGCHVL 64 (189)
Q Consensus 18 ~~~~~~~A~~lg~~la~~g-~~lv~GGg~~GlM~a~a~ga~~~gg~vi 64 (189)
.-.|.+.|-.+..-+|.+| ..+.-|--+ |-++-+.+.|.+++|..+
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~-~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNN-GFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCc-chHHHHHHHHHHhcCcee
Confidence 3568899999999999864 545556555 999999999999998654
No 395
>PRK08303 short chain dehydrogenase; Provisional
Probab=25.82 E-value=97 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=9.9
Q ss_pred HHHHHHHHHCCCeEEEcC
Q 045940 26 LDLATQLVERKINLVYGG 43 (189)
Q Consensus 26 ~~lg~~la~~g~~lv~GG 43 (189)
+++++.|++.|+.|+.-+
T Consensus 22 ~aia~~la~~G~~Vv~~~ 39 (305)
T PRK08303 22 RGIAVELGAAGATVYVTG 39 (305)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 345555566666655433
No 396
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=25.75 E-value=2.5e+02 Score=22.18 Aligned_cols=35 Identities=20% Similarity=0.529 Sum_probs=24.8
Q ss_pred CCeEEEcCCCCC---hhHHHHHHHHhcCCeEEEEecCc
Q 045940 36 KINLVYGGGSVG---LMGLVSQTIFDGGCHVLGVIPKA 70 (189)
Q Consensus 36 g~~lv~GGg~~G---lM~a~a~ga~~~gg~viGv~p~~ 70 (189)
.+.+|+|...+| ++.++.+...+.|.+|+++.|+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 478888876656 67777777777788889998864
No 397
>PRK07890 short chain dehydrogenase; Provisional
Probab=25.67 E-value=2.9e+02 Score=21.86 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
++|.|.|+++ -..+.+++.|+++|+.|+.......-.+...+.....+.++..+
T Consensus 6 k~vlItGa~~--------~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK07890 6 KVVVVSGVGP--------GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAV 59 (258)
T ss_pred CEEEEECCCC--------cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE
No 398
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=25.64 E-value=4.6e+02 Score=22.94 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred CeEEEcCCCCChhHHHHHHHH----hcCCeEEEEe
Q 045940 37 INLVYGGGSVGLMGLVSQTIF----DGGCHVLGVI 67 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~----~~gg~viGv~ 67 (189)
..|++.||++--|-++.+++. +.|.+++|+.
T Consensus 3 i~Il~sGG~apG~N~~i~~~v~~~~~~g~~v~G~~ 37 (338)
T cd00363 3 IGVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIY 37 (338)
T ss_pred EEEEccCCCchhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 456777777777766665544 3466777774
No 399
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=25.62 E-value=81 Score=25.84 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 91 HERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
.++....++.+|.+|+ +||--.+.-++.+.+...++.|++++|.+
T Consensus 162 ~~~~~~~~~~~Dlllv----iGTSl~v~p~~~l~~~~~~~~~~i~iN~~ 206 (225)
T cd01411 162 IEEAIQAIEKADLLVI----VGTSFVVYPFAGLIDYRQAGANLIAINKE 206 (225)
T ss_pred HHHHHHHHhcCCEEEE----ECcCCeehhHHHHHHHHhCCCeEEEECCC
Confidence 3556666778997777 33533444444444333367899999976
No 400
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=25.51 E-value=46 Score=18.41 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=14.7
Q ss_pred HHHHHHHHHCCCeEEEcCCCCChhHHHHHHH
Q 045940 26 LDLATQLVERKINLVYGGGSVGLMGLVSQTI 56 (189)
Q Consensus 26 ~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga 56 (189)
..-+.+|-+. |+ |+|.|+..+|
T Consensus 7 k~~~~wlkkk--------gp-gi~kaal~aa 28 (29)
T PF07442_consen 7 KKAGEWLKKK--------GP-GILKAALKAA 28 (29)
T ss_pred HHHHHHHHhc--------Cc-hHHHHHHHhc
Confidence 3445566554 57 9999887765
No 401
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=25.50 E-value=1.9e+02 Score=23.52 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCeeEEecC--CcchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 045940 92 ERKAEMARRADAFIALPG--GYGTMEELLEMITWSQLGIHDKPVGVLNVD 139 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpG--G~GTL~El~~~~~~~~~~~~~kPiill~~~ 139 (189)
+.-..+...||++|.... +.|+- ++|++. .++|++..+..
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~--~~Ea~~------~g~PvI~~~~~ 311 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLV--LLEAMA------AGLPVVAVDAP 311 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChH--HHHHHH------cCCcEEEeCCC
Confidence 444566778999775432 23332 566663 79999988765
No 402
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=25.44 E-value=1.5e+02 Score=25.20 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcC-CCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEe
Q 045940 91 HERKAEMARRADAFIALPGGYGTMEELLEMITWSQLG-IHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISA 169 (189)
Q Consensus 91 ~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~-~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 169 (189)
..|....++.+|.+|+ +||=-.+.-++.+.+.- .++.|++++|.+...- + ..-.+.+.
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~---------------~--~~~~~~i~ 263 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRA---------------D--PLLTLKVE 263 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCC---------------C--cceeEEEe
Confidence 4556666788998888 55655544333322222 4677999999753110 0 00136788
Q ss_pred CCHHHHHHHhhc
Q 045940 170 KNARDLLQGMEV 181 (189)
Q Consensus 170 ~~~ee~~~~l~~ 181 (189)
.+..|+++.|.+
T Consensus 264 g~~~evL~~l~~ 275 (285)
T PRK05333 264 ASCAQALAALVA 275 (285)
T ss_pred CCHHHHHHHHHH
Confidence 899999999865
No 403
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=25.42 E-value=4.7e+02 Score=23.08 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH-HCCCeEEEcCCCCChhHHHHHHHHhcC--CeEEEEecC
Q 045940 23 DAALDLATQLV-ERKINLVYGGGSVGLMGLVSQTIFDGG--CHVLGVIPK 69 (189)
Q Consensus 23 ~~A~~lg~~la-~~g~~lv~GGg~~GlM~a~a~ga~~~g--g~viGv~p~ 69 (189)
..+.++.+.+. +-.+ +|.+.|..|....++++..+.+ -+++||-|.
T Consensus 204 ttg~EI~eq~~~~~D~-vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~ 252 (368)
T PLN02556 204 TTGPEIWEDTLGQVDI-FVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPA 252 (368)
T ss_pred HHHHHHHHhcCCCCCE-EEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeC
Confidence 34555554432 2244 5555555599999999998864 489999774
No 404
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=25.38 E-value=58 Score=28.51 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=20.0
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
.||-|+|.+|++.|. .|.++|.+|+-|-
T Consensus 2 VvVIG~G~AGl~AA~--~Aae~G~~V~lve 29 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAI--EAAEAGAKVLLVE 29 (417)
T ss_dssp EEEE-SSHHHHHHHH--HHHHTTT-EEEEE
T ss_pred EEEECCCHHHHHHHH--HHhhhcCeEEEEE
Confidence 478899988888766 5677888888883
No 405
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=25.25 E-value=2.7e+02 Score=20.23 Aligned_cols=130 Identities=14% Similarity=0.068 Sum_probs=67.2
Q ss_pred HHHHHHHHHCCCe-EEEcCCCC--ChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCH--HHHHHHHHHh
Q 045940 26 LDLATQLVERKIN-LVYGGGSV--GLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDM--HERKAEMARR 100 (189)
Q Consensus 26 ~~lg~~la~~g~~-lv~GGg~~--GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~--~~R~~~m~~~ 100 (189)
.++.+.|.++... ++.|.|-. |.-+++.+=|-..|-.++- .|...-.....|+.+.- ....+ ...+..+ +.
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~-t~~~kg~i~~~hp~~~G--~~g~~~~~~~~~~l-~~ 77 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVAT-TPMGKGVIPEDHPLFLG--YLGLFGSPAANEAL-EQ 77 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEE-EGGGTTSSTTTSTTEEE--ESCGGSCHHHHHHH-HH
T ss_pred HHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEe-cCccccccCCCCchhcc--cCCccCCHHHHHHh-cC
Confidence 3566677665555 55555443 5666777766677777633 22211111112332211 12222 4555554 99
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcCCC-CCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHHHHh
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLGIH-DKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLLQGM 179 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~~~-~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l 179 (189)
||.+|+++-.....+-.. .+ .... ..++|-++.+. + -+.......+.++-|++++++.|
T Consensus 78 aDlvl~iG~~~~~~~~~~---~~--~~~~~~~~~I~I~~d~-~--------------~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 78 ADLVLAIGTRLSDFNTYG---FS--PAFNPDAKIIQIDPDP-A--------------EIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp SSEEEEESSSSSTTTTTT---TT--GCSTTTSEEEEEESSG-G--------------GTTSSSEESEEEESHHHHHHHHH
T ss_pred CCEEEEECCCCccccccc---cc--cccCCCCEEEEEECCH-H--------------HhCCCCCCCEEEEECHHHHhhCC
Confidence 999999987654422111 00 0112 23788888762 1 01222334578899999888765
No 406
>PRK07814 short chain dehydrogenase; Provisional
Probab=25.22 E-value=1.1e+02 Score=24.73 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=8.3
Q ss_pred HHHHHHHHCCCeEEEc
Q 045940 27 DLATQLVERKINLVYG 42 (189)
Q Consensus 27 ~lg~~la~~g~~lv~G 42 (189)
.+++.|+++|+.|+.-
T Consensus 25 ~~a~~l~~~G~~Vi~~ 40 (263)
T PRK07814 25 AIALAFAEAGADVLIA 40 (263)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 4445555556655433
No 407
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=25.19 E-value=2.1e+02 Score=25.15 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHHHHCCC-eEEE-cCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 18 RKIFSDAALDLATQLVERKI-NLVY-GGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 18 ~~~~~~~A~~lg~~la~~g~-~lv~-GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
..+.++..+-+++.+.+ |+ ++|| ||-.+---.+.+-.|...|=+.+.++
T Consensus 46 GNK~RKLefll~eal~~-g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~il 96 (323)
T COG2515 46 GNKIRKLEFLLGEALRK-GADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLIL 96 (323)
T ss_pred ccHHHHHHHHHhhhhhc-CCcEEEEecccchhHHHHHHHHHHhcCCcEEEEE
Confidence 35567777777787777 56 6776 55455666677777777788888885
No 408
>PRK07041 short chain dehydrogenase; Provisional
Probab=25.10 E-value=87 Score=24.57 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=15.6
Q ss_pred EEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 39 LVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 39 lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
||||+.. |+-.++++.-++.|-+++.+
T Consensus 1 lItGas~-~iG~~~a~~l~~~G~~v~~~ 27 (230)
T PRK07041 1 LVVGGSS-GIGLALARAFAAEGARVTIA 27 (230)
T ss_pred CeecCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 3556555 66666666666655555554
No 409
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=25.03 E-value=2.1e+02 Score=24.61 Aligned_cols=57 Identities=28% Similarity=0.308 Sum_probs=36.4
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH----CCCeEEEcCCCCChhHHHHHHHHhcC--CeEEEEecC
Q 045940 12 GSNSGNRKIFSDAALDLATQLVE----RKINLVYGGGSVGLMGLVSQTIFDGG--CHVLGVIPK 69 (189)
Q Consensus 12 ~s~~~~~~~~~~~A~~lg~~la~----~g~~lv~GGg~~GlM~a~a~ga~~~g--g~viGv~p~ 69 (189)
+++.-+...+...+.++.+.+.. -.+.++.-|+. |+.-.++++.++.+ -++|||-|.
T Consensus 157 ~~~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtG-gt~~Gi~~~~k~~~~~~~vigVe~~ 219 (331)
T PRK03910 157 GSNALGALGYVACALEIAQQLAEGGVDFDAVVVASGSG-GTHAGLAAGLAALGPDIPVIGVTVS 219 (331)
T ss_pred CCCchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcH-HHHHHHHHHHHHhCCCCeEEEEEec
Confidence 33333334444567777777763 34545555544 88888888887654 589999774
No 410
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=25.00 E-value=77 Score=25.93 Aligned_cols=40 Identities=13% Similarity=-0.053 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGG 43 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GG 43 (189)
|++|+|+.++-..-+--....+..--..|-++|+.+..=+
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEe
Confidence 4578888764222111112233344566777888876643
No 411
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=24.95 E-value=1.6e+02 Score=23.93 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|++|+|+ + .-|... .-.|..|+..||++|+.++
T Consensus 1 m~~iav~-~-KGGvGK--TT~~~nLA~~La~~G~kVl 33 (270)
T cd02040 1 MRQIAIY-G-KGGIGK--STTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CcEEEEE-e-CCcCCH--HHHHHHHHHHHHhCCCeEE
Confidence 6789998 3 444443 3567788999999998654
No 412
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.79 E-value=1.4e+02 Score=25.24 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 2 GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 2 ~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
+++++|+|.|....+ ..++..++.+|+.|+-
T Consensus 3 ~~~~~V~ViGaG~mG---------~~iA~~~a~~G~~V~l 33 (286)
T PRK07819 3 DAIQRVGVVGAGQMG---------AGIAEVCARAGVDVLV 33 (286)
T ss_pred CCccEEEEEcccHHH---------HHHHHHHHhCCCEEEE
Confidence 678899999986433 3455666777887654
No 413
>PRK06914 short chain dehydrogenase; Provisional
Probab=24.71 E-value=1.1e+02 Score=24.87 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGG 44 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg 44 (189)
+.|.|.|+++ -..+.+.+.|+++|+.|+.-+.
T Consensus 4 k~~lItGasg--------~iG~~la~~l~~~G~~V~~~~r 35 (280)
T PRK06914 4 KIAIVTGASS--------GFGLLTTLELAKKGYLVIATMR 35 (280)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHhCCCEEEEEeC
Confidence 3566666654 2344566666777777665443
No 414
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.65 E-value=1.4e+02 Score=23.78 Aligned_cols=34 Identities=6% Similarity=-0.166 Sum_probs=22.2
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 045940 7 VCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYG 42 (189)
Q Consensus 7 I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~G 42 (189)
|+|+.... .++-+.+....+-+.+.+.|+.++.-
T Consensus 2 Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~ 35 (273)
T cd06305 2 IAVVRYGG--SGDFDQAYLAGTKAEAEALGGDLRVY 35 (273)
T ss_pred eEEEeecC--CCcHHHHHHHHHHHHHHHcCCEEEEE
Confidence 56666542 24555667777777888888886663
No 415
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=24.60 E-value=1.4e+02 Score=23.75 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=20.3
Q ss_pred HHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 97 MARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
+....|++|+.|....-.+++...+. ..+.|+++++.
T Consensus 53 ~~~~vdgiii~~~~~~~~~~~~~~l~-----~~~iPvv~~~~ 89 (272)
T cd06301 53 IAQGVDAIIVVPVDTAATAPIVKAAN-----AAGIPLVYVNR 89 (272)
T ss_pred HHcCCCEEEEecCchhhhHHHHHHHH-----HCCCeEEEecC
Confidence 34467888887755432334433321 34567777653
No 416
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=24.59 E-value=2.8e+02 Score=21.94 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCCCh
Q 045940 19 KIFSDAALDLATQLVERKINLVYGGGSVGL 48 (189)
Q Consensus 19 ~~~~~~A~~lg~~la~~g~~lv~GGg~~Gl 48 (189)
+...+.++.+.+.+.+.+...++|-|.++.
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S~~ 57 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSCGNGGSHC 57 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 445666666666666669999999887554
No 417
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=24.59 E-value=2.8e+02 Score=25.55 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=0.0
Q ss_pred eEEecCCHHHHHHHHHHhcCe--eEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHH
Q 045940 83 DVLIVSDMHERKAEMARRADA--FIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLR 147 (189)
Q Consensus 83 ~~~~~~~~~~R~~~m~~~sda--~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~ 147 (189)
+++.+++-..-|.+..+...- +|++.||=||+.|+. --.+.-....-|+.++- +-|++++.
T Consensus 96 ~Ivktd~~gqak~l~e~~~t~~Dii~VaGGDGT~~eVV--TGi~Rrr~~~~pv~~~P--~G~~~l~~ 158 (535)
T KOG4435|consen 96 DIVKTDNQGQAKALAEAVDTQEDIIYVAGGDGTIGEVV--TGIFRRRKAQLPVGFYP--GGYDNLWL 158 (535)
T ss_pred EEEecCcHHHHHHHHHHhccCCCeEEEecCCCcHHHhh--HHHHhcccccCceeecc--CccchHhh
No 418
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=24.59 E-value=62 Score=29.21 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCC----------CChhHHHHHHHHhcCCeEEE
Q 045940 22 SDAALDLATQLVERKINLVYGGGS----------VGLMGLVSQTIFDGGCHVLG 65 (189)
Q Consensus 22 ~~~A~~lg~~la~~g~~lv~GGg~----------~GlM~a~a~ga~~~gg~viG 65 (189)
.+-|+.|++.|.++|+.|++||-. .|+-+..+.-+++.-|.++-
T Consensus 306 v~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 306 VKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence 456788899999999999987632 25666777778887776665
No 419
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=24.58 E-value=2e+02 Score=23.60 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=47.3
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE------------------------EcCCCCChhHHHHHHHHhcC
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV------------------------YGGGSVGLMGLVSQTIFDGG 60 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv------------------------~GGg~~GlM~a~a~ga~~~g 60 (189)
.+|-|+|-.+.+ -.+++++..|+.-|.... +|.|.+--.-.++.-+++.|
T Consensus 40 gkv~V~G~GkSG------~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g 113 (202)
T COG0794 40 GKVFVTGVGKSG------LIGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLG 113 (202)
T ss_pred CcEEEEcCChhH------HHHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcC
Confidence 467777766543 456778888877665533 34455455556666666667
Q ss_pred CeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCC
Q 045940 61 CHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGG 110 (189)
Q Consensus 61 g~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG 110 (189)
.++|+|+-... .-+.+.||.+|.+|+.
T Consensus 114 ~~liaiT~~~~-----------------------SsLak~aDvvl~ip~~ 140 (202)
T COG0794 114 AKLIAITSNPD-----------------------SSLAKAADVVLVIPVK 140 (202)
T ss_pred CcEEEEeCCCC-----------------------ChHHHhcCeEEEccCc
Confidence 77777642210 2356778888888873
No 420
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=24.39 E-value=1.2e+02 Score=25.62 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcC-CeEEEE
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGG-CHVLGV 66 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~g-g~viGv 66 (189)
+|++.-|++.+... +.++.|++.|+.||-.|.. .+....=|.+-+ +.++-+
T Consensus 7 kv~lITGASSGiG~-------A~A~~l~~~G~~vvl~aRR---~drL~~la~~~~~~~~~~~ 58 (246)
T COG4221 7 KVALITGASSGIGE-------ATARALAEAGAKVVLAARR---EERLEALADEIGAGAALAL 58 (246)
T ss_pred cEEEEecCcchHHH-------HHHHHHHHCCCeEEEEecc---HHHHHHHHHhhccCceEEE
Confidence 45555555544332 6677888889988888877 333444444444 444444
No 421
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=24.31 E-value=59 Score=24.33 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=19.6
Q ss_pred eeEEecCCcchHHHHH-H---HHHHHh-cCCCCCcEEEEeC
Q 045940 103 AFIALPGGYGTMEELL-E---MITWSQ-LGIHDKPVGVLNV 138 (189)
Q Consensus 103 a~I~lpGG~GTL~El~-~---~~~~~~-~~~~~kPiill~~ 138 (189)
-.|++|||.|..+-+. . +..+.+ ...++|||..+..
T Consensus 39 DalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~ 79 (147)
T PF01965_consen 39 DALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICH 79 (147)
T ss_dssp SEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETT
T ss_pred CEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCC
Confidence 3688999999666555 2 122211 1136889987653
No 422
>PRK07524 hypothetical protein; Provisional
Probab=24.28 E-value=5.6e+02 Score=23.49 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHC-CCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhc
Q 045940 23 DAALDLATQLVER-KINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRA 101 (189)
Q Consensus 23 ~~A~~lg~~la~~-g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~s 101 (189)
+...++.+.|.++ .-.|+.|+|-.+..+++.+=|-..|-.|+-- +...--....|+.+.-. ..+....+.+ ++.|
T Consensus 189 ~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~pV~tt-~~~kg~~p~~hp~~~G~--~~~~~~~~~~-~~~a 264 (535)
T PRK07524 189 AALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALT-INAKGLLPAGHPLLLGA--SQSLPAVRAL-IAEA 264 (535)
T ss_pred HHHHHHHHHHHhCCCcEEEECCChHHHHHHHHHHHHHHCCCEEEc-ccccccCCCCChhhccC--CCCCHHHHHH-HHhC
Confidence 4566777888774 4556667665455555555555567666522 11110000012211111 1122344444 5789
Q ss_pred CeeEEecCCcch
Q 045940 102 DAFIALPGGYGT 113 (189)
Q Consensus 102 da~I~lpGG~GT 113 (189)
|.+|+++-..+.
T Consensus 265 Dlvl~vG~~~~~ 276 (535)
T PRK07524 265 DVVLAVGTELGE 276 (535)
T ss_pred CEEEEeCCCcCc
Confidence 999999866543
No 423
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=24.22 E-value=65 Score=22.08 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=16.9
Q ss_pred hcCeeEEecCCcchHHHHHH
Q 045940 100 RADAFIALPGGYGTMEELLE 119 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~ 119 (189)
.+...|=++||+=||+|+..
T Consensus 45 ~~~VMVRVGGGW~tL~~fL~ 64 (73)
T smart00243 45 RSTVMVRVGGGWETLDEYLL 64 (73)
T ss_pred CCeEEEEECCcHHHHHHHHH
Confidence 46788889999999999863
No 424
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.16 E-value=2.1e+02 Score=24.52 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=31.9
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC--CCch-----HHHHHHHHHHHcCC
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD--GYYD-----SLLRFFDKGVEEGF 157 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~--g~~~-----~l~~~l~~~~~~g~ 157 (189)
..|.+|+ -||=||+-..+..+ ...++||+=+|.+ ||.. .+.+.++++.+..|
T Consensus 64 ~~dlvi~-lGGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 64 SADMVIS-IGGDGTFLRTATYV-----GNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDY 122 (292)
T ss_pred CCCEEEE-ECCcHHHHHHHHHh-----cCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCCc
Confidence 4565554 57899985444332 2467899878764 5664 45556666665444
No 425
>PRK05693 short chain dehydrogenase; Provisional
Probab=24.16 E-value=1.3e+02 Score=24.56 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=16.5
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYG 42 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~G 42 (189)
|++|-|.|+++ -..+.+.+.|+++|+.|+.-
T Consensus 1 mk~vlItGasg--------giG~~la~~l~~~G~~V~~~ 31 (274)
T PRK05693 1 MPVVLITGCSS--------GIGRALADAFKAAGYEVWAT 31 (274)
T ss_pred CCEEEEecCCC--------hHHHHHHHHHHHCCCEEEEE
Confidence 35566666553 12234555556667766543
No 426
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.13 E-value=1.8e+02 Score=25.26 Aligned_cols=53 Identities=25% Similarity=0.430 Sum_probs=32.6
Q ss_pred HhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC--CCc-----hHHHHHHHHHHHcCC
Q 045940 99 RRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD--GYY-----DSLLRFFDKGVEEGF 157 (189)
Q Consensus 99 ~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~--g~~-----~~l~~~l~~~~~~g~ 157 (189)
+.+|.+|++ ||=||+-..+.. ...+++||+=+|.. ||. +++.+.++++.+..|
T Consensus 71 ~~~D~vi~l-GGDGT~L~aar~-----~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 71 DGCELVLVL-GGDGTILRAAEL-----ARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDY 130 (306)
T ss_pred cCCCEEEEE-cCCHHHHHHHHH-----hccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCc
Confidence 346765555 779998544332 22467899888763 664 455566776665554
No 427
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=24.12 E-value=4.1e+02 Score=22.18 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 35 RKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 35 ~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
.+..+|.|+|++|+|-+ .-|+..|.+++.++
T Consensus 145 ~~~vlV~G~G~vG~~a~--q~ak~~G~~~v~~~ 175 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLA--RLTKAAGGSPPAVW 175 (308)
T ss_pred CCcEEEECCCHHHHHHH--HHHHHcCCceEEEe
Confidence 34678889888787654 45566688766654
No 428
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.07 E-value=1.6e+02 Score=23.52 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=18.4
Q ss_pred HHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 97 MARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 97 m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
.....|++|+.+...-...+....+. ..+.|+++++.
T Consensus 54 ~~~~vdgvii~~~~~~~~~~~l~~~~-----~~~ipvV~~~~ 90 (273)
T cd06310 54 IARGPDAILLAPTDAKALVPPLKEAK-----DAGIPVVLIDS 90 (273)
T ss_pred HHhCCCEEEEcCCChhhhHHHHHHHH-----HCCCCEEEecC
Confidence 34457777776643322233333322 24567776653
No 429
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=24.01 E-value=5e+02 Score=22.89 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=61.9
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE-EEcCCCCChhHHHHHHHHhcCCeEEEEec-CccccccccCCCCce
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINL-VYGGGSVGLMGLVSQTIFDGGCHVLGVIP-KALVPIEISGQTVGD 83 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~l-v~GGg~~GlM~a~a~ga~~~gg~viGv~p-~~~~~~e~~~~~~~~ 83 (189)
++=|.+-.+....+ -...-+-.+.|.+.|+.+ +|-.-. + ..++...+.|- +.|.| .....- ...+
T Consensus 169 KlEvi~e~~~llpd--~~~~v~aa~~L~~~Gf~v~~yc~~d--~--~~a~~l~~~g~--~avmPl~~pIGs---g~gv-- 235 (326)
T PRK11840 169 KLEVLGDAKTLYPD--MVETLKATEILVKEGFQVMVYCSDD--P--IAAKRLEDAGA--VAVMPLGAPIGS---GLGI-- 235 (326)
T ss_pred EEEEcCCCCCcccC--HHHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHhcCC--EEEeeccccccC---CCCC--
Confidence 44455554433221 233445566777889998 776544 2 33344444454 56656 322110 0111
Q ss_pred EEecCCHHHHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 84 VLIVSDMHERKAEMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 84 ~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
. =.+.-+.+++..+.-|++.+|+||-+....++. .+---+++|+
T Consensus 236 --~---~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame------lGadgVL~nS 279 (326)
T PRK11840 236 --Q---NPYTIRLIVEGATVPVLVDAGVGTASDAAVAME------LGCDGVLMNT 279 (326)
T ss_pred --C---CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH------cCCCEEEEcc
Confidence 0 133445666778999999999999999999885 3344455554
No 430
>PLN02494 adenosylhomocysteinase
Probab=24.00 E-value=4e+02 Score=24.76 Aligned_cols=91 Identities=16% Similarity=0.290 Sum_probs=49.0
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcchH-
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTM- 114 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL- 114 (189)
.-.+|.|.|+.| ..+++-++..|.+|+.+-.+.....+.....+ +. .++.+ .++.+|.+|...|..+.+
T Consensus 255 KtVvViGyG~IG--r~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~-~v---v~leE----al~~ADVVI~tTGt~~vI~ 324 (477)
T PLN02494 255 KVAVICGYGDVG--KGCAAAMKAAGARVIVTEIDPICALQALMEGY-QV---LTLED----VVSEADIFVTTTGNKDIIM 324 (477)
T ss_pred CEEEEECCCHHH--HHHHHHHHHCCCEEEEEeCCchhhHHHHhcCC-ee---ccHHH----HHhhCCEEEECCCCccchH
Confidence 345778888766 45556667778888887332111001111111 11 13322 457899999988877765
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCCchHH
Q 045940 115 EELLEMITWSQLGIHDKPVGVLNVDGYYDSL 145 (189)
Q Consensus 115 ~El~~~~~~~~~~~~~kPiill~~~g~~~~l 145 (189)
.+.+..+ +.=.+|.|.. .+++.
T Consensus 325 ~e~L~~M--------K~GAiLiNvG-r~~~e 346 (477)
T PLN02494 325 VDHMRKM--------KNNAIVCNIG-HFDNE 346 (477)
T ss_pred HHHHhcC--------CCCCEEEEcC-CCCCc
Confidence 4444332 2334566764 55433
No 431
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=23.92 E-value=3.2e+02 Score=24.81 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=38.7
Q ss_pred CeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccC-CCCceEEecCCHHHHHHHHHHhcCeeEEecCCcchHH
Q 045940 37 INLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISG-QTVGDVLIVSDMHERKAEMARRADAFIALPGGYGTME 115 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~-~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~GTL~ 115 (189)
..+|.|.|+.|+. +++-++..|.+|+.+-++... .+... ..+ +.. .+. . .++.+|.+|-..|...+++
T Consensus 204 tVvViG~G~IG~~--va~~ak~~Ga~ViV~d~d~~R-~~~A~~~G~-~~~---~~~---e-~v~~aDVVI~atG~~~~i~ 272 (413)
T cd00401 204 VAVVAGYGDVGKG--CAQSLRGQGARVIVTEVDPIC-ALQAAMEGY-EVM---TME---E-AVKEGDIFVTTTGNKDIIT 272 (413)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEECChhh-HHHHHhcCC-EEc---cHH---H-HHcCCCEEEECCCCHHHHH
Confidence 4588899887774 445566778888776332111 11111 111 111 222 1 2357898888888777766
Q ss_pred H
Q 045940 116 E 116 (189)
Q Consensus 116 E 116 (189)
+
T Consensus 273 ~ 273 (413)
T cd00401 273 G 273 (413)
T ss_pred H
Confidence 4
No 432
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=23.92 E-value=2e+02 Score=24.91 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=39.3
Q ss_pred HHHhcCeeEEe---cCCcchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHH
Q 045940 97 MARRADAFIAL---PGGYGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNAR 173 (189)
Q Consensus 97 m~~~sda~I~l---pGG~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~e 173 (189)
....||++|+- ..|++. =+.|+++ .++|||..+.. . ..+. ......+.+.+|++
T Consensus 294 ~~~~adv~v~Ps~~~eG~~~--~~lEAma------~G~PVV~t~~~-~-~~i~-------------~~~~~g~lv~~~~~ 350 (397)
T TIGR03087 294 YLAHAAVAVAPLRIARGIQN--KVLEAMA------MAKPVVASPEA-A-EGID-------------ALPGAELLVAADPA 350 (397)
T ss_pred HHHhCCEEEecccccCCccc--HHHHHHH------cCCCEEecCcc-c-cccc-------------ccCCcceEeCCCHH
Confidence 46789998752 245543 4677774 79999986532 1 1110 01112344458999
Q ss_pred HHHHHhhcCCCC
Q 045940 174 DLLQGMEVPNLL 185 (189)
Q Consensus 174 e~~~~l~~~~~~ 185 (189)
++.+.|.+....
T Consensus 351 ~la~ai~~ll~~ 362 (397)
T TIGR03087 351 DFAAAILALLAN 362 (397)
T ss_pred HHHHHHHHHHcC
Confidence 999888765543
No 433
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.89 E-value=1.2e+02 Score=24.14 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=15.7
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
...+|+||.. |+=..+++-.++.|-.|+.+
T Consensus 12 ~~vlItGa~g-~iG~~~a~~L~~~g~~V~~~ 41 (264)
T PRK12829 12 LRVLVTGGAS-GIGRAIAEAFAEAGARVHVC 41 (264)
T ss_pred CEEEEeCCCC-cHHHHHHHHHHHCCCEEEEE
Confidence 3445555554 55555555555555554444
No 434
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=23.86 E-value=1.8e+02 Score=29.47 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=30.6
Q ss_pred HHHHHCCCeEEEcCCCCC---hhHHHHHHHHhcCCeEEEEecCc
Q 045940 30 TQLVERKINLVYGGGSVG---LMGLVSQTIFDGGCHVLGVIPKA 70 (189)
Q Consensus 30 ~~la~~g~~lv~GGg~~G---lM~a~a~ga~~~gg~viGv~p~~ 70 (189)
..+..+++.+|+|+..+| +|.++.+...+.|.+|+|+-|+.
T Consensus 357 ~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTG 400 (988)
T PRK13889 357 HVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSG 400 (988)
T ss_pred HHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcH
Confidence 344446788999987767 77777776666788999998854
No 435
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.82 E-value=1.7e+02 Score=23.52 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=21.6
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
++....|++|+.|...-++.+....+. ..+.|+++++.
T Consensus 53 l~~~~vdgiii~~~~~~~~~~~l~~~~-----~~~ipvV~~~~ 90 (271)
T cd06312 53 AIAAKPDGIVVTIPDPDALDPAIKRAV-----AAGIPVISFNA 90 (271)
T ss_pred HHHhCCCEEEEeCCChHHhHHHHHHHH-----HCCCeEEEeCC
Confidence 445568999888854222233222221 35678888864
No 436
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=23.82 E-value=1.9e+02 Score=23.13 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=20.9
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
++....|++|+.|...-...|....+ .. +.|+++++.
T Consensus 51 l~~~~vDgiIi~~~~~~~~~~~l~~~-----~~-~ipvV~~~~ 87 (271)
T cd06314 51 LIAEGVDGIAISPIDPKAVIPALNKA-----AA-GIKLITTDS 87 (271)
T ss_pred HHhcCCCEEEEecCChhHhHHHHHHH-----hc-CCCEEEecC
Confidence 44456888888875432223333222 14 678888764
No 437
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=23.74 E-value=1e+02 Score=25.33 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=17.3
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHH
Q 045940 10 FCGSNSGNRKIFSDAALDLATQLVE 34 (189)
Q Consensus 10 ~g~s~~~~~~~~~~~A~~lg~~la~ 34 (189)
||||...+.+.+.+.++.+.+...+
T Consensus 6 ~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 6 FGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred ECchhcCCHHHHHHHHHHHHHHHHC
Confidence 8999887555566667777766544
No 438
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=23.71 E-value=1.1e+02 Score=24.82 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=28.4
Q ss_pred cCeeEEecCCcchHHHHHHHHHHHhcC----------CCCCcEEEEeCCCCchHHHHHHHHH
Q 045940 101 ADAFIALPGGYGTMEELLEMITWSQLG----------IHDKPVGVLNVDGYYDSLLRFFDKG 152 (189)
Q Consensus 101 sda~I~lpGG~GTL~El~~~~~~~~~~----------~~~kPiill~~~g~~~~l~~~l~~~ 152 (189)
+--+|=.-.|.---.-|+.++-+...+ +..+|+|==|. |||..|++.=+++
T Consensus 95 G~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~-GFw~QLi~YE~qL 155 (198)
T KOG1718|consen 95 GKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNV-GFWRQLIDYEQQL 155 (198)
T ss_pred CcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCc-cHHHHHHHHHHHh
Confidence 334454555554444455554332222 14689876554 7999998854444
No 439
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=23.69 E-value=1.5e+02 Score=21.29 Aligned_cols=32 Identities=19% Similarity=0.032 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHH
Q 045940 20 IFSDAALDLATQLVERKINLVYGGGSVGLMGLV 52 (189)
Q Consensus 20 ~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~ 52 (189)
-+..-.-.||+.|.++||.|..+..+ ..-+.+
T Consensus 10 Ghv~P~lala~~L~~rGh~V~~~~~~-~~~~~v 41 (139)
T PF03033_consen 10 GHVYPFLALARALRRRGHEVRLATPP-DFRERV 41 (139)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEETG-GGHHHH
T ss_pred hHHHHHHHHHHHHhccCCeEEEeecc-cceecc
Confidence 35566678999999999999888776 555444
No 440
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=23.62 E-value=1.1e+02 Score=25.75 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGS 45 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~ 45 (189)
+|++..|++.+.. +.+++.||+.|..++-.+..
T Consensus 9 kvalVTG~s~GIG-------~aia~~la~~Ga~v~i~~r~ 41 (270)
T KOG0725|consen 9 KVALVTGGSSGIG-------KAIALLLAKAGAKVVITGRS 41 (270)
T ss_pred cEEEEECCCChHH-------HHHHHHHHHCCCEEEEEeCC
Confidence 5666666666655 67888889999998888776
No 441
>PRK00170 azoreductase; Reviewed
Probab=23.62 E-value=2.1e+02 Score=22.21 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=17.2
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHC
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVER 35 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~ 35 (189)
|++|.|+.+|-..+.+.-.+.++.+-+.+.++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~ 32 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEA 32 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHh
Confidence 34555554443332244456666777776665
No 442
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=23.57 E-value=1.9e+02 Score=23.74 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCeeEEecCCcchHHHHHHHHHHHhc-CCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeC
Q 045940 92 ERKAEMARRADAFIALPGGYGTMEELLEMITWSQL-GIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAK 170 (189)
Q Consensus 92 ~R~~~m~~~sda~I~lpGG~GTL~El~~~~~~~~~-~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 170 (189)
.+....++.+|.+|+++ -..+ +.-++.+... ...+.|++++|.+... ++ ....+.+..
T Consensus 169 ~~a~~~~~~~dl~lviG-Tsl~---V~p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~~ 227 (242)
T PRK00481 169 DEAYEALEEADLFIVIG-TSLV---VYPAAGLPYEAREHGAKTVEINLEPTP---------------LD--SLFDLVIHG 227 (242)
T ss_pred HHHHHHHhcCCEEEEEC-CCce---EcCHhHHHHHHHHCCCeEEEECCCCCC---------------CC--CccCEEEEC
Confidence 45555567889988865 3322 2223333321 1367899999976321 01 113477888
Q ss_pred CHHHHHHHhhc
Q 045940 171 NARDLLQGMEV 181 (189)
Q Consensus 171 ~~ee~~~~l~~ 181 (189)
+.+|+++.|.+
T Consensus 228 ~~~~~l~~l~~ 238 (242)
T PRK00481 228 KAGEVVPELVE 238 (242)
T ss_pred CHHHHHHHHHH
Confidence 99999988854
No 443
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=23.55 E-value=2.1e+02 Score=21.31 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINL 39 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~l 39 (189)
+++|.-.+.+ .++.....|.++++.+++.|+.+
T Consensus 2 ~~~iv~~~~P-y~~~~~~~al~~A~aa~~~gh~v 34 (128)
T PRK00207 2 RYAIAVTGPA-YGTQQASSAYQFAQALLAEGHEL 34 (128)
T ss_pred EEEEEEcCCC-CCCHHHHHHHHHHHHHHhCCCCe
Confidence 4666655544 35778889999999999999864
No 444
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=23.53 E-value=1.4e+02 Score=23.71 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=28.5
Q ss_pred HHhcCeeEEec-CCcchHHHHHHH-HHHHh-c---C-CCCCcEEEEeCCCCc-----hHHHHHHHHHHHcCCC
Q 045940 98 ARRADAFIALP-GGYGTMEELLEM-ITWSQ-L---G-IHDKPVGVLNVDGYY-----DSLLRFFDKGVEEGFI 158 (189)
Q Consensus 98 ~~~sda~I~lp-GG~GTL~El~~~-~~~~~-~---~-~~~kPiill~~~g~~-----~~l~~~l~~~~~~g~i 158 (189)
+..+|++|+-. =-.|++..-+.. +.... + + ..+||+.++.+.|.. ..+..++..+...|++
T Consensus 67 l~~aD~ii~gsPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~ 139 (200)
T PRK03767 67 LADYDAIIFGTPTRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMV 139 (200)
T ss_pred HHhCCEEEEEecccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCE
Confidence 46788755443 334544433222 21111 0 1 246888888776532 2344444434445543
No 445
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=23.52 E-value=1.1e+02 Score=24.74 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=19.7
Q ss_pred EcCCCCCCC---hHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 045940 10 FCGSNSGNR---KIFSDAALDLATQLVERKINLVYGGGS 45 (189)
Q Consensus 10 ~g~s~~~~~---~~~~~~A~~lg~~la~~g~~lv~GGg~ 45 (189)
+|||..... +...+.|+.+.+...+....||.|||.
T Consensus 5 lGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~ 43 (221)
T TIGR02076 5 LGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGK 43 (221)
T ss_pred echhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcH
Confidence 466665432 333445555554433345678898765
No 446
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=23.51 E-value=1e+02 Score=26.04 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=30.0
Q ss_pred CHHHHHHHHHH-----hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEE
Q 045940 89 DMHERKAEMAR-----RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVG 134 (189)
Q Consensus 89 ~~~~R~~~m~~-----~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPii 134 (189)
+=.+|-+-+.+ ..|+++..-||.|+. ++..-+.|..+..++|+++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~i 95 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIFV 95 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEEE
Confidence 33455555444 368999999999996 4666666666665555544
No 447
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.47 E-value=2e+02 Score=23.01 Aligned_cols=57 Identities=7% Similarity=0.042 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC--CChhHHHHHHHHhcCCeEEEEe
Q 045940 7 VCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGS--VGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 7 I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~--~GlM~a~a~ga~~~gg~viGv~ 67 (189)
|+|.-..- .++-+.+....+-+.+.+.|+.++.-... .--.....+-..+. .+=|++
T Consensus 2 Igvv~~~~--~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgii 60 (269)
T cd06281 2 IGCLVSDI--TNPLLAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQR--RMDGII 60 (269)
T ss_pred EEEEecCC--ccccHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHc--CCCEEE
Confidence 56655432 24555666677777778889987654322 12234444444443 344553
No 448
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=23.45 E-value=1.7e+02 Score=24.66 Aligned_cols=18 Identities=17% Similarity=-0.110 Sum_probs=14.2
Q ss_pred EEEeCCHHHHHHHhhcCC
Q 045940 166 VISAKNARDLLQGMEVPN 183 (189)
Q Consensus 166 i~~~~~~ee~~~~l~~~~ 183 (189)
...++|.+|+++++++..
T Consensus 238 ~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 238 VAIFDDISQLNQFVARLL 255 (256)
T ss_pred CccCCCHHHHHHHHHHhc
Confidence 356789999999998753
No 449
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=23.43 E-value=2.2e+02 Score=24.97 Aligned_cols=86 Identities=12% Similarity=0.150 Sum_probs=48.7
Q ss_pred CeeEEecCCcchHHHHHHHH----HHHhc--CCCCCcEEEEeC--CCCchHH-HHHHHHHHHcCCCCc-cccCcEEEeCC
Q 045940 102 DAFIALPGGYGTMEELLEMI----TWSQL--GIHDKPVGVLNV--DGYYDSL-LRFFDKGVEEGFIKS-SARNIVISAKN 171 (189)
Q Consensus 102 da~I~lpGG~GTL~El~~~~----~~~~~--~~~~kPiill~~--~g~~~~l-~~~l~~~~~~g~i~~-~~~~~i~~~~~ 171 (189)
|.-.-.-+=.-++.|+..-+ -|..+ +....|+.++.. .+|+..- ...++++...=.+.. +...+....|+
T Consensus 219 ~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~~e~~~ld~aGHwVh~E~ 298 (315)
T KOG2382|consen 219 DGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPNVEVHELDEAGHWVHLEK 298 (315)
T ss_pred CCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHhccchheeecccCCceeecCC
Confidence 34444444444555555442 22223 335678887753 3566543 444554433322222 22467889999
Q ss_pred HHHHHHHhhcCCCCCC
Q 045940 172 ARDLLQGMEVPNLLPS 187 (189)
Q Consensus 172 ~ee~~~~l~~~~~~~~ 187 (189)
|++.++.|.+|...|-
T Consensus 299 P~~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 299 PEEFIESISEFLEEPE 314 (315)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999999998776553
No 450
>PF14953 DUF4504: Domain of unknown function (DUF4504)
Probab=23.40 E-value=1.4e+02 Score=25.36 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=36.4
Q ss_pred CCcEEEEeCCCC-chHHHHHHHHH-----HHcCCCCcccc----CcEEEeCCHHHHHHHhhc
Q 045940 130 DKPVGVLNVDGY-YDSLLRFFDKG-----VEEGFIKSSAR----NIVISAKNARDLLQGMEV 181 (189)
Q Consensus 130 ~kPiill~~~g~-~~~l~~~l~~~-----~~~g~i~~~~~----~~i~~~~~~ee~~~~l~~ 181 (189)
=||.+++|..+. +..+.++++.+ .+.+++..... +--.+.=+++++.+.++.
T Consensus 32 LRpa~L~Dy~~~~~~~lq~~L~~L~~~~~q~~~~~~~~L~vl~I~~~~~lvn~~~~~~~le~ 93 (270)
T PF14953_consen 32 LRPAVLYDYNGAGAPQLQEYLCSLLRLAQQESGLLFQNLRVLVIDDNILLVNPKELLEHLES 93 (270)
T ss_pred CccEEEEEcCCCCHHHHHHHHHHhhhhhhcccchhccceEEEEEcCcEEEEeHHHHHHHHHH
Confidence 499999999988 99999998887 56665543311 112344468888888765
No 451
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=1.3e+02 Score=27.25 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=23.3
Q ss_pred HHHHHHHCCCe-EEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 28 LATQLVERKIN-LVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 28 lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
+.++..+..|. ||-|||..|| |.++.|...|.+|.-+
T Consensus 11 l~~~~~sydyDLIviGgGSgGL--acaKeAa~~G~kV~~l 48 (503)
T KOG4716|consen 11 LARLFSSYDYDLIVIGGGSGGL--ACAKEAADLGAKVACL 48 (503)
T ss_pred hhhhcccCCccEEEEcCCcchh--hHHHHHHhcCCcEEEE
Confidence 34445556676 5667777565 5566677777776544
No 452
>PRK06182 short chain dehydrogenase; Validated
Probab=23.39 E-value=4e+02 Score=21.50 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=19.7
Q ss_pred CeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 37 INLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
..+||||.. |+=.++++...+.|-+|+++
T Consensus 5 ~vlItGasg-giG~~la~~l~~~G~~V~~~ 33 (273)
T PRK06182 5 VALVTGASS-GIGKATARRLAAQGYTVYGA 33 (273)
T ss_pred EEEEECCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 457777766 77777777666666666665
No 453
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=23.34 E-value=1.9e+02 Score=24.84 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHHHH
Q 045940 111 YGTMEELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRFFD 150 (189)
Q Consensus 111 ~GTL~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~l~ 150 (189)
.=|+.|+.+.+....+...+-|.+-++.. ||.|.+++|-
T Consensus 208 ~~~l~eilE~LmN~l~~~p~DpYv~i~~~-~WPpyie~Ll 246 (268)
T PF11802_consen 208 LITLREILEILMNKLLDSPHDPYVKIDDS-FWPPYIELLL 246 (268)
T ss_pred hhHHHHHHHHHHHHhcCCCCCCceecCcc-cChHHHHHHH
Confidence 44678999998766665555699988765 9999999883
No 454
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=23.30 E-value=2.6e+02 Score=25.78 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=35.8
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEcCCCCChhHHHHHHHH---hcC--CeEEEE
Q 045940 8 CVFCGSNSGNRKIFSDAALDLATQLVERKIN-LVYGGGSVGLMGLVSQTIF---DGG--CHVLGV 66 (189)
Q Consensus 8 ~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~-lv~GGg~~GlM~a~a~ga~---~~g--g~viGv 66 (189)
++.|+||.. ....++.+.|-++|+. |++=||. |-|..+.+=+. +.| -.||||
T Consensus 154 TiLGTSR~~------~~~~~iv~~L~~~~I~~L~vIGGd-gT~~~A~~L~ee~~~~g~~I~VIGI 211 (459)
T PTZ00286 154 TILGSSRGG------FDPKVMVDTLIRHGINILFTLGGD-GTHRGALAIYKELRRRKLNISVVGI 211 (459)
T ss_pred ceeccCCCh------hhHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHHHHHhCCCceEEEe
Confidence 456777643 2356788888888887 5666677 99987766444 344 577887
No 455
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.25 E-value=1.6e+02 Score=23.54 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=21.9
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
++....|++|+.|....+.++....+. ..++|+++++.
T Consensus 51 ~~~~~~dgiii~~~~~~~~~~~l~~~~-----~~~ipvV~~~~ 88 (277)
T cd06319 51 AIDKGVSGIIISPTNSSAAVTLLKLAA-----QAKIPVVIADI 88 (277)
T ss_pred HHhcCCCEEEEcCCchhhhHHHHHHHH-----HCCCCEEEEec
Confidence 444567888877654433344433321 35678888874
No 456
>PRK07775 short chain dehydrogenase; Provisional
Probab=23.22 E-value=4.1e+02 Score=21.57 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 3 KFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 3 ~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
+.+.|.|.|+++ -..+.+.+.|+++|+.|+.-.....-...+.+...+.++++..+
T Consensus 9 ~~~~vlVtGa~g--------~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 64 (274)
T PRK07775 9 DRRPALVAGASS--------GIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAF 64 (274)
T ss_pred CCCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE
No 457
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=23.22 E-value=1.2e+02 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.079 Sum_probs=14.9
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
.+.|-|-|+++ -.-+.+++.|+++|+.++.
T Consensus 5 ~~~ilITGas~--------GiG~aia~~l~~~G~~v~~ 34 (251)
T COG1028 5 GKVALVTGASS--------GIGRAIARALAREGARVVV 34 (251)
T ss_pred CCEEEEeCCCC--------HHHHHHHHHHHHCCCeEEE
Confidence 34555555554 2333455555566666443
No 458
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=23.14 E-value=3.4e+02 Score=20.58 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=49.4
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEecC-ccccccccCCCCce
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPK-ALVPIEISGQTVGD 83 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~-~~~~~e~~~~~~~~ 83 (189)
++|+|+|-|. ...+.|+..|.++|.++..--..+- .+.+...++.-.+..+ +. .+...++-.+.. -
T Consensus 29 k~v~VvGrs~--------~vG~pla~lL~~~gatV~~~~~~t~---~l~~~v~~ADIVvsAt-g~~~~i~~~~ikpGa-~ 95 (140)
T cd05212 29 KKVLVVGRSG--------IVGAPLQCLLQRDGATVYSCDWKTI---QLQSKVHDADVVVVGS-PKPEKVPTEWIKPGA-T 95 (140)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEeCCCCc---CHHHHHhhCCEEEEec-CCCCccCHHHcCCCC-E
Confidence 6788888764 2345677777788888765543321 1222233333333332 11 112222211111 1
Q ss_pred EEec-CCHHHHHHHHHHhcCeeEEecCCcchHHHH
Q 045940 84 VLIV-SDMHERKAEMARRADAFIALPGGYGTMEEL 117 (189)
Q Consensus 84 ~~~~-~~~~~R~~~m~~~sda~I~lpGG~GTL~El 117 (189)
++.+ .++ +.-....+.+.++.=+|||+|-+.=.
T Consensus 96 Vidvg~~~-~~~~~~~~~a~~~tPvpgGVGp~T~a 129 (140)
T cd05212 96 VINCSPTK-LSGDDVKESASLYVPMTGGVGKLTVA 129 (140)
T ss_pred EEEcCCCc-ccchhhHhhceEEcCCCCCchHHHHH
Confidence 1111 111 11234556688999999999987543
No 459
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=23.12 E-value=1.7e+02 Score=22.98 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=20.0
Q ss_pred HHHHHHHHhcC-eeEEecCCc---chHHHHHHHHHHHhcCCCCCcEE
Q 045940 92 ERKAEMARRAD-AFIALPGGY---GTMEELLEMITWSQLGIHDKPVG 134 (189)
Q Consensus 92 ~R~~~m~~~sd-a~I~lpGG~---GTL~El~~~~~~~~~~~~~kPii 134 (189)
++-..++..|. -+|++++|. +..+|+.+... ..+.|++
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laE-----klgiPVv 59 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIE-----KFDLPVV 59 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHH-----HHCCCEE
Confidence 44455555665 455555555 44555544443 2356766
No 460
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=23.12 E-value=1.3e+02 Score=24.23 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=23.4
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
...||+||.. |+=.++++...+.|.+|+.+
T Consensus 10 k~vlItG~s~-gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 10 KIIIVTGGSS-GIGLAIVKELLANGANVVNA 39 (266)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 4568888877 88888888877888877766
No 461
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=23.11 E-value=1.6e+02 Score=25.30 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCC--eEEEEecC
Q 045940 24 AALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGC--HVLGVIPK 69 (189)
Q Consensus 24 ~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg--~viGv~p~ 69 (189)
.+.|+-+.+....+.++..|+. |+..-++++.++.+. +++||-|.
T Consensus 157 ~a~Ei~~q~~~~d~vvv~~G~G-g~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 157 LGLEVVEQMPDLATVLVPLSGG-GLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred HHHHHHHhCCCCCEEEEEcChh-HHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 3334443333233456655555 999999999988654 89999774
No 462
>PRK07063 short chain dehydrogenase; Provisional
Probab=23.10 E-value=1.3e+02 Score=24.13 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=17.1
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYG 42 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~G 42 (189)
++|.|.|+++ + ..+++.+.|+++|+.|+.-
T Consensus 8 k~vlVtGas~-g-------IG~~~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 8 KVALVTGAAQ-G-------IGAAIARAFAREGAAVALA 37 (260)
T ss_pred CEEEEECCCc-h-------HHHHHHHHHHHCCCEEEEE
Confidence 4566666653 1 2345666667777776543
No 463
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.07 E-value=2.4e+02 Score=22.68 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHH-----------HHHHCCCeEEEcCCCC----------ChhHHHHHHHHhcCCeEEEE
Q 045940 19 KIFSDAALDLAT-----------QLVERKINLVYGGGSV----------GLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 19 ~~~~~~A~~lg~-----------~la~~g~~lv~GGg~~----------GlM~a~a~ga~~~gg~viGv 66 (189)
..+.+..+++|. .|.+.+..|+.|++.. |+.+++.+.+.+.|..++||
T Consensus 15 ~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGi 83 (209)
T PRK13146 15 RSAAKALERAGAGADVVVTADPDAVAAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGI 83 (209)
T ss_pred HHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEE
Confidence 445555555553 3344455566665532 34556666666678888888
No 464
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.00 E-value=2.2e+02 Score=24.14 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHH
Q 045940 2 GKFKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVS 53 (189)
Q Consensus 2 ~~~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a 53 (189)
+.-+.|.|-|.|+-+... +|++.++++||.++--....--|...+
T Consensus 5 ~~~k~VlItgcs~GGIG~-------ala~ef~~~G~~V~AtaR~~e~M~~L~ 49 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGY-------ALAKEFARNGYLVYATARRLEPMAQLA 49 (289)
T ss_pred cCCCeEEEeecCCcchhH-------HHHHHHHhCCeEEEEEccccchHhhHH
Confidence 556889999888876443 577788999999888887766666554
No 465
>PRK07023 short chain dehydrogenase; Provisional
Probab=22.98 E-value=1.3e+02 Score=23.85 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.3
Q ss_pred eEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 38 NLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 38 ~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
.||+||.. |+=.++++-..+.|.+++.+.
T Consensus 4 vlItGasg-giG~~ia~~l~~~G~~v~~~~ 32 (243)
T PRK07023 4 AIVTGHSR-GLGAALAEQLLQPGIAVLGVA 32 (243)
T ss_pred EEEecCCc-chHHHHHHHHHhCCCEEEEEe
Confidence 58999988 999999999888888888773
No 466
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=22.92 E-value=1.3e+02 Score=24.22 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 045940 6 RVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGG 44 (189)
Q Consensus 6 ~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg 44 (189)
+|-|.|+++ -..+.+++.|+++|+.|+.-+.
T Consensus 2 ~vlItGas~--------gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSR--------GIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCc--------HHHHHHHHHHHHcCCEEEEEeC
Confidence 566666654 2344566666777777665443
No 467
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=22.87 E-value=88 Score=26.67 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=19.3
Q ss_pred CeEEEcCCCCChhHHHHHHHHh----cCCeEEEE
Q 045940 37 INLVYGGGSVGLMGLVSQTIFD----GGCHVLGV 66 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~----~gg~viGv 66 (189)
+.|+++||++.-|-++.+++.+ .|.+++|+
T Consensus 3 I~Il~sGG~apG~Na~i~~~v~~a~~~g~~v~g~ 36 (282)
T PF00365_consen 3 IAILTSGGDAPGMNAAIRGVVRYAIRRGWEVYGI 36 (282)
T ss_dssp EEEEEESS--TTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred EEEEecCCCchhhhHHHHHHHHHHHhcCCEEEEE
Confidence 4577777777777777666654 46677777
No 468
>PRK14072 6-phosphofructokinase; Provisional
Probab=22.82 E-value=84 Score=28.46 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=21.8
Q ss_pred CCCeEEEcCCCCChhHHHHHHHHh----cC--CeEEEEe
Q 045940 35 RKINLVYGGGSVGLMGLVSQTIFD----GG--CHVLGVI 67 (189)
Q Consensus 35 ~g~~lv~GGg~~GlM~a~a~ga~~----~g--g~viGv~ 67 (189)
.++.|+|+||++--|-|+.+|+.+ .| -+|+|+.
T Consensus 4 k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~ 42 (416)
T PRK14072 4 GNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGAR 42 (416)
T ss_pred ceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEe
Confidence 356677777777777766666554 35 4677774
No 469
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=22.78 E-value=2e+02 Score=20.83 Aligned_cols=52 Identities=13% Similarity=0.279 Sum_probs=34.1
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHH-HHHcCCCCccccCcEEEeCCHHHHHHHhhc
Q 045940 128 IHDKPVGVLNVDGYYDSLLRFFDK-GVEEGFIKSSARNIVISAKNARDLLQGMEV 181 (189)
Q Consensus 128 ~~~kPiill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 181 (189)
-+-+|++.++.+|.-+.++..++. +-+.+.|.-.... ..-+|..|+.+.|++
T Consensus 15 h~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~--~~~edr~eia~~l~~ 67 (97)
T COG1534 15 HHLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQ--NAREDKKEIAEALAE 67 (97)
T ss_pred ccCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeec--cchhhHHHHHHHHHH
Confidence 356999999999999999998875 4444444432211 122366777777764
No 470
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=22.75 E-value=1.3e+02 Score=24.27 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=7.3
Q ss_pred HHHHHHHHCCCeEEE
Q 045940 27 DLATQLVERKINLVY 41 (189)
Q Consensus 27 ~lg~~la~~g~~lv~ 41 (189)
.+.+.|+++|+.|+.
T Consensus 20 ~ia~~l~~~G~~V~~ 34 (262)
T TIGR03325 20 AIVDRFVAEGARVAV 34 (262)
T ss_pred HHHHHHHHCCCEEEE
Confidence 344444555555543
No 471
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=22.73 E-value=3.9e+02 Score=21.89 Aligned_cols=68 Identities=25% Similarity=0.304 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHHhcCeeEEecCCcc--hHHHHHHHHHHH
Q 045940 47 GLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMARRADAFIALPGGYG--TMEELLEMITWS 124 (189)
Q Consensus 47 GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~~sda~I~lpGG~G--TL~El~~~~~~~ 124 (189)
=.|.-++++.+..||..+ +. +..+....+++.+|++++=+|-.. +.+.+..+..
T Consensus 18 ~~~~~~a~~~~~~g~~~~---~~-------------------~~~e~~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~-- 73 (242)
T cd01170 18 VVMNFVANVLLAIGASPI---MS-------------------DAPEEVEELAKIAGALVINIGTLTSEQIEAMLKAGK-- 73 (242)
T ss_pred hhHhHHHHHHHHhCCchh---hc-------------------CCHHHHHHHHHHcCcEEEeCCCCChHHHHHHHHHHH--
Confidence 568888899998887522 10 123333455678899888444221 1222222221
Q ss_pred hcCCCCCcEEEEeCC
Q 045940 125 QLGIHDKPVGVLNVD 139 (189)
Q Consensus 125 ~~~~~~kPiill~~~ 139 (189)
....+++|+ ++|..
T Consensus 74 ~~~~~~~pv-VlDp~ 87 (242)
T cd01170 74 AANQLGKPV-VLDPV 87 (242)
T ss_pred HHHhcCCCE-EEccc
Confidence 122457886 57775
No 472
>PLN02827 Alcohol dehydrogenase-like
Probab=22.70 E-value=5.1e+02 Score=22.47 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=19.1
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCC-eEEEEe
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGC-HVLGVI 67 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg-~viGv~ 67 (189)
...+|+|+|..|++ +.+-|+..|. .++.+.
T Consensus 195 ~~VlV~G~G~vG~~--~iqlak~~G~~~vi~~~ 225 (378)
T PLN02827 195 SSVVIFGLGTVGLS--VAQGAKLRGASQIIGVD 225 (378)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCCeEEEEC
Confidence 46678887655554 4556777787 466663
No 473
>PRK06114 short chain dehydrogenase; Provisional
Probab=22.60 E-value=1.3e+02 Score=24.22 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=16.6
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGG 43 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GG 43 (189)
+++-|.|+++ -..+.+++.|+++|+.++.-+
T Consensus 9 k~~lVtG~s~--------gIG~~ia~~l~~~G~~v~~~~ 39 (254)
T PRK06114 9 QVAFVTGAGS--------GIGQRIAIGLAQAGADVALFD 39 (254)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEe
Confidence 3455555543 233455566666676665443
No 474
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=22.58 E-value=1.1e+02 Score=25.07 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=7.1
Q ss_pred hhHHHHHHHHhcCC
Q 045940 48 LMGLVSQTIFDGGC 61 (189)
Q Consensus 48 lM~a~a~ga~~~gg 61 (189)
-.+..++...++|.
T Consensus 204 ~q~~~a~~lidaGa 217 (250)
T PF09587_consen 204 EQRELARALIDAGA 217 (250)
T ss_pred HHHHHHHHHHHcCC
Confidence 34555555555553
No 475
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=22.49 E-value=3.2e+02 Score=23.56 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=34.8
Q ss_pred CCCeEEEEEcCCCCCCC-hHHHHHHHHHHHHHHHCCCeEEE------cCCC
Q 045940 2 GKFKRVCVFCGSNSGNR-KIFSDAALDLATQLVERKINLVY------GGGS 45 (189)
Q Consensus 2 ~~~~~I~V~g~s~~~~~-~~~~~~A~~lg~~la~~g~~lv~------GGg~ 45 (189)
+.+.+|+|.-.+..-.+ |.-.++|.++-.+.|++|..||. ||++
T Consensus 15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYP 65 (337)
T KOG0805|consen 15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYP 65 (337)
T ss_pred ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCC
Confidence 34567787766665555 66799999999999999999885 8877
No 476
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.48 E-value=1.6e+02 Score=23.38 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=20.5
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 045940 7 VCVFCGSNSGNRKIFSDAALDLATQLVERKINLVY 41 (189)
Q Consensus 7 I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~ 41 (189)
|+|++... .++-+.+..+.+-+.+.++|+.++.
T Consensus 2 i~~~~~~~--~~~~~~~~~~~i~~~~~~~g~~~~i 34 (267)
T cd06322 2 IGASLLTQ--QHPFYIELANAMKEEAKKQKVNLIV 34 (267)
T ss_pred eeEeecCc--ccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 56666443 2555566666677777777776654
No 477
>PRK08267 short chain dehydrogenase; Provisional
Probab=22.46 E-value=1.6e+02 Score=23.61 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
|++|-|.|+++ -....+.+.|+++|+.|+
T Consensus 1 mk~vlItGasg--------~iG~~la~~l~~~G~~V~ 29 (260)
T PRK08267 1 MKSIFITGAAS--------GIGRATALLFAAEGWRVG 29 (260)
T ss_pred CcEEEEeCCCc--------hHHHHHHHHHHHCCCeEE
No 478
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.36 E-value=2.1e+02 Score=24.61 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=32.7
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC--CCch-----HHHHHHHHHHHcCC
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD--GYYD-----SLLRFFDKGVEEGF 157 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~--g~~~-----~l~~~l~~~~~~g~ 157 (189)
.+|.+|++ ||=||+-..+..+ ....+||+=+|.+ ||.. .+.+.++++.+..|
T Consensus 68 ~~D~vi~l-GGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 68 YCDLVAVL-GGDGTFLSVAREI-----APRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGKY 126 (296)
T ss_pred CCCEEEEE-CCcHHHHHHHHHh-----cccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCCc
Confidence 46765555 7799985554433 2457899888764 5654 45556677665554
No 479
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=22.34 E-value=1.1e+02 Score=24.65 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=21.5
Q ss_pred CeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCc
Q 045940 37 INLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKA 70 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~ 70 (189)
..||-|||.+| ..-++..++.|..++=|-|+.
T Consensus 11 ~vlVvGgG~va--~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 11 AVLVVGGGDVA--LRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred eEEEECcCHHH--HHHHHHHHHCCCEEEEEcCCC
Confidence 45777888744 344566777888888776653
No 480
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=22.28 E-value=1.4e+02 Score=29.14 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 045940 4 FKRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLV 40 (189)
Q Consensus 4 ~~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv 40 (189)
.++|+|++|......+.=...|+.+.+.|-+.||.++
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~ 487 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVS 487 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEE
Confidence 3456666655555556567778888888877888765
No 481
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=22.21 E-value=5.9e+02 Score=23.02 Aligned_cols=104 Identities=16% Similarity=0.293 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHC----CCeEEEcCCCCC---hhHHHHHHHHhcC--CeEEEEecCccccccccCCCCceEEecCCHH-HH
Q 045940 24 AALDLATQLVER----KINLVYGGGSVG---LMGLVSQTIFDGG--CHVLGVIPKALVPIEISGQTVGDVLIVSDMH-ER 93 (189)
Q Consensus 24 ~A~~lg~~la~~----g~~lv~GGg~~G---lM~a~a~ga~~~g--g~viGv~p~~~~~~e~~~~~~~~~~~~~~~~-~R 93 (189)
.|+...+.++++ +..++||+.++| ||.|++....+.+ .+++-+....+. .+. ...+....+. .|
T Consensus 115 ~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~-~~~-----~~~~~~~~~~~f~ 188 (440)
T PRK14088 115 FAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDL-----VDSMKEGKLNEFR 188 (440)
T ss_pred HHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHH-----HHHHhcccHHHHH
Confidence 344555555542 346888876655 8888888877653 355544322111 000 0000111221 11
Q ss_pred HHHHHHhcCeeEE-----ecCCcchHHHHHHHHHHHhcCCCCCcEEEE
Q 045940 94 KAEMARRADAFIA-----LPGGYGTMEELLEMITWSQLGIHDKPVGVL 136 (189)
Q Consensus 94 ~~~m~~~sda~I~-----lpGG~GTL~El~~~~~~~~~~~~~kPiill 136 (189)
+ .+....|.+++ +.|-.+|.+|++.++.... ..++++++.
T Consensus 189 ~-~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIit 233 (440)
T PRK14088 189 E-KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVIC 233 (440)
T ss_pred H-HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEE
Confidence 1 11124665553 3455567788888764322 345666664
No 482
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=22.14 E-value=3.7e+02 Score=22.94 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=35.8
Q ss_pred HHhcCeeEEecCCcchHHHHHH-HHHHHhcCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccCcEEEeCCHHHHH
Q 045940 98 ARRADAFIALPGGYGTMEELLE-MITWSQLGIHDKPVGVLNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISAKNARDLL 176 (189)
Q Consensus 98 ~~~sda~I~lpGG~GTL~El~~-~~~~~~~~~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~ 176 (189)
+..+|++|..-|...+ .++.. ++. + ...+|.+++|..- ..++...+ ..-..-.++-+||.+++.
T Consensus 236 l~~aDvVi~at~~~~~-~~~~~~~~~--~--~~~~~~~viDlav-Prdi~~~v---------~~l~~v~l~~vDdl~~~~ 300 (311)
T cd05213 236 LNEADVVISATGAPHY-AKIVERAMK--K--RSGKPRLIVDLAV-PRDIEPEV---------GELEGVRLYTIDDLEEVV 300 (311)
T ss_pred HhcCCEEEECCCCCch-HHHHHHHHh--h--CCCCCeEEEEeCC-CCCCchhh---------ccCCCcEEEEHHHhHHHH
Confidence 4679999999998887 22222 221 1 1247888887641 11111111 001123467777877776
Q ss_pred HH
Q 045940 177 QG 178 (189)
Q Consensus 177 ~~ 178 (189)
+.
T Consensus 301 ~~ 302 (311)
T cd05213 301 EE 302 (311)
T ss_pred HH
Confidence 63
No 483
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=22.13 E-value=1.6e+02 Score=23.31 Aligned_cols=61 Identities=10% Similarity=0.177 Sum_probs=29.2
Q ss_pred eEEecCCcchH-HHHHHHHHHHhcCCCCCcEEEEeCCCCchHHHHH-HHHHHHcCCCCccccCcE-EEeCCHHHHHHHhh
Q 045940 104 FIALPGGYGTM-EELLEMITWSQLGIHDKPVGVLNVDGYYDSLLRF-FDKGVEEGFIKSSARNIV-ISAKNARDLLQGME 180 (189)
Q Consensus 104 ~I~lpGG~GTL-~El~~~~~~~~~~~~~kPiill~~~g~~~~l~~~-l~~~~~~g~i~~~~~~~i-~~~~~~ee~~~~l~ 180 (189)
.|++.||.||- ..+. ...+||++=++ |- +++++ ++.+.+.|. .+.+ .+-...+++.+++.
T Consensus 3 aiIla~G~g~Rl~plt--------~~~pK~llpi~--g~--piI~~~l~~l~~~Gi-----~~I~iv~~~~~~~i~~~l~ 65 (217)
T cd04197 3 AVVLADSFNRRFRPLT--------KEKPRCLLPLA--NV--PLIDYTLEFLALNGV-----EEVFVFCCSHSDQIKEYIE 65 (217)
T ss_pred EEEEcCCCcccccccc--------cCCCceeeEEC--CE--ehHHHHHHHHHHCCC-----CeEEEEeCCCHHHHHHHHh
Confidence 37777888884 2221 12355555332 32 45554 355555543 1222 22233566666665
Q ss_pred c
Q 045940 181 V 181 (189)
Q Consensus 181 ~ 181 (189)
+
T Consensus 66 ~ 66 (217)
T cd04197 66 K 66 (217)
T ss_pred h
Confidence 4
No 484
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=22.09 E-value=2.6e+02 Score=18.77 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=41.6
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 7 VCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 7 I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
|+|++-+.. ++.+.+.|.++.+.|-++|+.+..=-.. .=++.--+-|...|-..+=|+
T Consensus 2 v~Ii~~~~~--~~~~~~~a~~l~~~L~~~gi~v~~d~~~-~~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 2 VVIIPVGKK--DEEIIEYAQELANKLRKAGIRVELDDSD-KSLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp EEEEESSCS--HHHHHHHHHHHHHHHHHTTSEEEEESSS-STHHHHHHHHHHTTESEEEEE
T ss_pred EEEEEeCCC--cHHHHHHHHHHHHHHHHCCCEEEEECCC-CchhHHHHHHhhcCCeEEEEE
Confidence 566665543 6688999999999999999876555455 556666777777776554443
No 485
>PRK08226 short chain dehydrogenase; Provisional
Probab=22.07 E-value=1.3e+02 Score=24.12 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=26.7
Q ss_pred CCeEEEcCCCCChhHHHHHHHHhcCCeEEEEe
Q 045940 36 KINLVYGGGSVGLMGLVSQTIFDGGCHVLGVI 67 (189)
Q Consensus 36 g~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~ 67 (189)
...||+||.. |+=.++++...+.|-+|+.+-
T Consensus 7 ~~~lItG~s~-giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 7 KTALITGALQ-GIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEec
Confidence 4679999987 999999999999988888773
No 486
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=22.02 E-value=6.5e+02 Score=23.41 Aligned_cols=82 Identities=7% Similarity=-0.092 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHCC-CeEEEcCCC--CChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEEecCCHHHHHHHHHH
Q 045940 23 DAALDLATQLVERK-INLVYGGGS--VGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVLIVSDMHERKAEMAR 99 (189)
Q Consensus 23 ~~A~~lg~~la~~g-~~lv~GGg~--~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~~~~~~~~R~~~m~~ 99 (189)
+...++.+.|++.. -.++.|+|- .+.-+++.+=|-+.|-.|+- .+...-.....|+.+.-.. . ..+++
T Consensus 208 ~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~~gkg~~~~~hp~~~G~~-------~-~~~~~ 278 (569)
T PRK08327 208 EDIARAAEMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVE-YAGEVVNYPSDHPLHLGPD-------P-RADLA 278 (569)
T ss_pred HHHHHHHHHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEe-cCCCceeCCCCCccccccc-------c-chhhh
Confidence 34556667776644 445566654 24555666666666766552 2221111111122111111 2 23357
Q ss_pred hcCeeEEecCCcch
Q 045940 100 RADAFIALPGGYGT 113 (189)
Q Consensus 100 ~sda~I~lpGG~GT 113 (189)
.||.+|+++.-.+.
T Consensus 279 ~aDlvl~lG~~l~~ 292 (569)
T PRK08327 279 EADLVLVVDSDVPW 292 (569)
T ss_pred hCCEEEEeCCCCCC
Confidence 89999999976554
No 487
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=21.99 E-value=2.3e+02 Score=27.70 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=29.6
Q ss_pred CCCeEEEcCCCCC---hhHHHHHHHHhcCCeEEEEecCcc
Q 045940 35 RKINLVYGGGSVG---LMGLVSQTIFDGGCHVLGVIPKAL 71 (189)
Q Consensus 35 ~g~~lv~GGg~~G---lM~a~a~ga~~~gg~viGv~p~~~ 71 (189)
.++.+++|+.++| ++.++.+.+...|..|+++-|+..
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~ 407 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGK 407 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHH
Confidence 5788999987766 788888777777889999988653
No 488
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=21.99 E-value=2.9e+02 Score=23.28 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=18.5
Q ss_pred CChHHH-HHHHHHHHHHHHCCCe--EEEcCCCCChhHHHHH
Q 045940 17 NRKIFS-DAALDLATQLVERKIN--LVYGGGSVGLMGLVSQ 54 (189)
Q Consensus 17 ~~~~~~-~~A~~lg~~la~~g~~--lv~GGg~~GlM~a~a~ 54 (189)
.|+++. +.|.++-+ +.+.|+. ||.|||. +.+-...
T Consensus 25 id~~~i~~~a~~i~~-~~~~g~eV~iVvGGGn--i~Rg~~~ 62 (238)
T COG0528 25 IDPEVLDRIANEIKE-LVDLGVEVAVVVGGGN--IARGYIG 62 (238)
T ss_pred CCHHHHHHHHHHHHH-HHhcCcEEEEEECCCH--HHHhHHH
Confidence 465554 44444433 3444554 7999987 4444333
No 489
>PRK08862 short chain dehydrogenase; Provisional
Probab=21.95 E-value=1.3e+02 Score=24.05 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=25.7
Q ss_pred CeEEEcCCCCChhHHHHHHHHhcCCeEEEE
Q 045940 37 INLVYGGGSVGLMGLVSQTIFDGGCHVLGV 66 (189)
Q Consensus 37 ~~lv~GGg~~GlM~a~a~ga~~~gg~viGv 66 (189)
..+|+||+. |+=.++++...+.|..++.+
T Consensus 7 ~~lVtGas~-GIG~aia~~la~~G~~V~~~ 35 (227)
T PRK08862 7 IILITSAGS-VLGRTISCHFARLGATLILC 35 (227)
T ss_pred EEEEECCcc-HHHHHHHHHHHHCCCEEEEE
Confidence 568999998 99999999999999887776
No 490
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.92 E-value=3.2e+02 Score=23.20 Aligned_cols=49 Identities=24% Similarity=0.362 Sum_probs=30.1
Q ss_pred hcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeCC--CCch-----HHHHHHHHHHH
Q 045940 100 RADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNVD--GYYD-----SLLRFFDKGVE 154 (189)
Q Consensus 100 ~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~~--g~~~-----~l~~~l~~~~~ 154 (189)
.+|.+|++ ||=||+-..+..+ ...++||+=+|.. ||.. .+.+.++.+.+
T Consensus 42 ~~d~vi~i-GGDGT~L~aa~~~-----~~~~~PilgIn~G~lGFL~~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 42 RAQLAIVI-GGDGNMLGRARVL-----AKYDIPLIGINRGNLGFLTDIDPKNAYEQLEACLE 97 (272)
T ss_pred CCCEEEEE-CCcHHHHHHHHHh-----ccCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHh
Confidence 46765555 7789985544433 2457898877753 6754 34455666555
No 491
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.88 E-value=1.7e+02 Score=23.29 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=23.1
Q ss_pred HHHHhcCeeEEecCCcchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 045940 96 EMARRADAFIALPGGYGTMEELLEMITWSQLGIHDKPVGVLNV 138 (189)
Q Consensus 96 ~m~~~sda~I~lpGG~GTL~El~~~~~~~~~~~~~kPiill~~ 138 (189)
++-...|++|+.+.-..+..+....+. ..+.|++++|.
T Consensus 52 l~~~~vdgiii~~~~~~~~~~~l~~~~-----~~~iPvV~~~~ 89 (275)
T cd06317 52 LIAQKVDGIILWPTDGQAYIPGLRKAK-----QAGIPVVITNS 89 (275)
T ss_pred HHHcCCCEEEEecCCccccHHHHHHHH-----HCCCcEEEeCC
Confidence 344568899888765444444433331 35689988875
No 492
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=21.84 E-value=42 Score=23.65 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=28.8
Q ss_pred EeCCCCchHHHHHHHHHHHcCCCCccccCcEEEe-----CCHHHHHHHhhcCCC
Q 045940 136 LNVDGYYDSLLRFFDKGVEEGFIKSSARNIVISA-----KNARDLLQGMEVPNL 184 (189)
Q Consensus 136 l~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~-----~~~ee~~~~l~~~~~ 184 (189)
+.++.+.+.++..+.++++. |+-.+.|++- ++|+.+++.+++|++
T Consensus 27 ~~~ee~~d~lv~hF~~iteH----P~gSDLIfYP~~~~edsPegIv~~vKeWRa 76 (85)
T PF01320_consen 27 LKTEEEHDELVDHFEKITEH----PDGSDLIFYPEDGREDSPEGIVKEVKEWRA 76 (85)
T ss_dssp SSSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC----CCCCceeeeCCCCCCCCHHHHHHHHHHHHH
Confidence 44555777887777766542 3344555443 589999999998754
No 493
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=21.80 E-value=1.6e+02 Score=24.04 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINLVYG 42 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~lv~G 42 (189)
.++||.|+|+-. +.-+.=+.|.++|+.|.+=
T Consensus 2 l~~avVCasN~N-------RSMEAH~~L~~~G~~V~Sf 32 (195)
T PF04722_consen 2 LRFAVVCASNQN-------RSMEAHNVLKKAGFNVRSF 32 (195)
T ss_dssp SEEEEEESSSSS-------HHHHHHHHHHHTT-EEEEE
T ss_pred ceEEEEccCCCC-------cCHHHHHHHHHCCCceEee
Confidence 479999999763 3334456788999998763
No 494
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=21.78 E-value=6.7e+02 Score=23.48 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHCC-CeEEEcCCCCChhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEE-ecCCHHHHHHHHHHh
Q 045940 23 DAALDLATQLVERK-INLVYGGGSVGLMGLVSQTIFDGGCHVLGVIPKALVPIEISGQTVGDVL-IVSDMHERKAEMARR 100 (189)
Q Consensus 23 ~~A~~lg~~la~~g-~~lv~GGg~~GlM~a~a~ga~~~gg~viGv~p~~~~~~e~~~~~~~~~~-~~~~~~~R~~~m~~~ 100 (189)
+...++.+.|.+.. -.|+.|+|-.+..+++.+=|-..|-.|+-- +...-.....|+.+.-.+ ...+-..++ .++.
T Consensus 196 ~~i~~a~~~L~~AkrPvi~~G~g~~~a~~~l~~lae~~~~PV~tt-~~gkg~~~e~hp~~~G~~G~~g~~~a~~--~~~~ 272 (597)
T PRK08273 196 EDLRRAAEVLNAGRKVAILVGAGALGATDEVIAVAERLGAGVAKA-LLGKAALPDDLPWVTGSIGLLGTKPSYE--LMRE 272 (597)
T ss_pred HHHHHHHHHHhcCCCEEEEECcchHhHHHHHHHHHHHhCCceeec-ccCcccCCCCCccceecCCCCccHHHHH--HHHh
Confidence 34566777887755 445556655455666555555566665532 111100011222221111 111223332 4578
Q ss_pred cCeeEEecCCcc
Q 045940 101 ADAFIALPGGYG 112 (189)
Q Consensus 101 sda~I~lpGG~G 112 (189)
||.+|+++..++
T Consensus 273 aDlvl~lG~~~~ 284 (597)
T PRK08273 273 CDTLLMVGSSFP 284 (597)
T ss_pred CCEEEEeCCCCC
Confidence 999999998653
No 495
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=21.75 E-value=5.1e+02 Score=22.11 Aligned_cols=31 Identities=35% Similarity=0.443 Sum_probs=21.2
Q ss_pred CCeEEEcC-CCCChhHHHHHHHHhcCCeEEEEec
Q 045940 36 KINLVYGG-GSVGLMGLVSQTIFDGGCHVLGVIP 68 (189)
Q Consensus 36 g~~lv~GG-g~~GlM~a~a~ga~~~gg~viGv~p 68 (189)
...+|+|+ |.+|. ++.+-|+..|.+++++..
T Consensus 160 ~~VlV~GaaG~vG~--~aiqlAk~~G~~Vi~~~~ 191 (348)
T PLN03154 160 DSVFVSAASGAVGQ--LVGQLAKLHGCYVVGSAG 191 (348)
T ss_pred CEEEEecCccHHHH--HHHHHHHHcCCEEEEEcC
Confidence 35678998 44444 455667778888888754
No 496
>PRK10494 hypothetical protein; Provisional
Probab=21.71 E-value=1.9e+02 Score=24.23 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=9.4
Q ss_pred hcCeeEEecCCc
Q 045940 100 RADAFIALPGGY 111 (189)
Q Consensus 100 ~sda~I~lpGG~ 111 (189)
.+|++|||+||.
T Consensus 78 ~~d~IVVLGgG~ 89 (259)
T PRK10494 78 KVDYIVVLGGGY 89 (259)
T ss_pred CCCEEEEcCCCc
Confidence 478888888875
No 497
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=21.70 E-value=1.4e+02 Score=24.07 Aligned_cols=15 Identities=7% Similarity=0.193 Sum_probs=6.9
Q ss_pred HHHHHHHHCCCeEEE
Q 045940 27 DLATQLVERKINLVY 41 (189)
Q Consensus 27 ~lg~~la~~g~~lv~ 41 (189)
.+++.|+++|+.|+.
T Consensus 21 ~ia~~l~~~G~~V~~ 35 (263)
T PRK06200 21 ALVERFLAEGARVAV 35 (263)
T ss_pred HHHHHHHHCCCEEEE
Confidence 344444445555443
No 498
>PRK10307 putative glycosyl transferase; Provisional
Probab=21.65 E-value=1.5e+02 Score=25.67 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 045940 5 KRVCVFCGSNSGNRKIFSDAALDLATQLVERKINL 39 (189)
Q Consensus 5 ~~I~V~g~s~~~~~~~~~~~A~~lg~~la~~g~~l 39 (189)
++|++++..-.+.-........+|++.|.+.||.+
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V 35 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEV 35 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeE
Confidence 46888876433222223456789999999998875
No 499
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=21.63 E-value=4.9e+02 Score=21.90 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHH-HCCCeEEEcCCCCChhHHHHHHHHhcC--CeEEEEecC
Q 045940 22 SDAALDLATQLV-ERKINLVYGGGSVGLMGLVSQTIFDGG--CHVLGVIPK 69 (189)
Q Consensus 22 ~~~A~~lg~~la-~~g~~lv~GGg~~GlM~a~a~ga~~~g--g~viGv~p~ 69 (189)
...+.|+-+++. +-.+.++.-|+. |++.-++++.++.+ -+++||=|.
T Consensus 150 ~t~~~Ei~~q~~~~~d~iv~~vG~G-g~~~Gv~~~lk~~~~~~kvi~Vep~ 199 (290)
T TIGR01138 150 TSTGPEIWQQTGGRITHFVSSMGTT-GTIMGVSRFLKEQNPPVQIVGLQPE 199 (290)
T ss_pred HhHHHHHHHHcCCCCCEEEECCCch-HHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 345555555553 224444444444 99989999888754 489999774
No 500
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=21.56 E-value=6e+02 Score=22.83 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHC-----CCeEEEcCCCCC---hhHHHHHHHHhc--CCeEEEE
Q 045940 24 AALDLATQLVER-----KINLVYGGGSVG---LMGLVSQTIFDG--GCHVLGV 66 (189)
Q Consensus 24 ~A~~lg~~la~~-----g~~lv~GGg~~G---lM~a~a~ga~~~--gg~viGv 66 (189)
.|+..++.+++. +..++||..++| |+.|++..+.+. +..++-+
T Consensus 132 ~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 132 LAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred HHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 355566666653 345788876666 899999988876 4455554
Done!