Query 045941
Match_columns 102
No_of_seqs 47 out of 49
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 07:06:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00477 LEA_5: Small hydrophi 100.0 1.8E-43 3.8E-48 252.8 5.9 88 10-98 1-109 (109)
2 KOG4766 Uncharacterized conser 69.7 4 8.6E-05 27.7 2.0 29 5-33 22-57 (64)
3 COG3729 GsiB General stress pr 66.9 4.3 9.4E-05 28.0 1.8 46 31-76 17-64 (73)
4 PF10685 KGG: Stress-induced b 65.4 2.5 5.4E-05 23.3 0.3 16 61-76 6-21 (23)
5 PF00477 LEA_5: Small hydrophi 62.9 5.5 0.00012 29.1 1.8 28 61-88 33-60 (109)
6 PF09072 TMA7: Translation mac 45.9 20 0.00043 24.0 2.2 29 5-33 21-56 (63)
7 PF06858 NOG1: Nucleolar GTP-b 29.9 42 0.00091 21.8 1.8 17 31-47 23-39 (58)
8 PF06189 5-nucleotidase: 5'-nu 23.5 24 0.00053 28.8 -0.2 19 80-98 198-219 (264)
9 COG1862 YajC Preprotein transl 19.9 78 0.0017 22.1 1.7 21 13-33 34-54 (97)
10 COG4118 Phd Antitoxin of toxin 18.0 1.1E+02 0.0023 20.6 2.0 16 15-30 13-28 (84)
No 1
>PF00477 LEA_5: Small hydrophilic plant seed protein; InterPro: IPR000389 This entry contains a number of bacterial proteins annotated as stress-induced and members of the plant LEA (late embryogenesis abundant) proteins, which are small hydrophilic plant seed proteins that are structurally related. These proteins contains from 83 to 153 amino acid residues and may play a role [, ] in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.
Probab=100.00 E-value=1.8e-43 Score=252.77 Aligned_cols=88 Identities=69% Similarity=1.026 Sum_probs=85.0
Q ss_pred hhhhh-hHHHHHHHHhcCCccccCCCCCCCHHHHHHHHhhccCCccchhhhhcchhhh--------------------hh
Q 045941 10 MSSGQ-ERAELDAKARQGQTVVPGGTGGKSPEAQEHLAEGRSRGGQTRKEQLGTEGYQ--------------------EM 68 (102)
Q Consensus 10 Mas~q-~r~eLd~rAr~GeTVVpgGTGGksleAQe~LAEGrsrGGQtRkEQLG~EGYq--------------------EM 68 (102)
|||+| +|++||++||+|+||||||||||||+||+||||||+|||+||++|+|+|+|+ +|
T Consensus 1 ma~~q~~r~eld~~aregetvv~gGtggksl~aqe~laEggkKGGetr~e~~G~E~YqEiG~KGGe~t~e~~g~EfY~ei 80 (109)
T PF00477_consen 1 MASGQESREELDARAREGETVVPGGTGGKSLEAQERLAEGGKKGGETRKEQHGKEFYQEIGKKGGEATKEKHGKEFYEEI 80 (109)
T ss_pred CcchhHHHHHHHHHHhcCCccccCCCCCCcchHHHHHHHHHhhcccchhhhcchhHHHHHhhccCccchhhhchHHHHHH
Confidence 89988 7999999999999999999999999999999999999999999888888888 88
Q ss_pred ccCCCCcccCCCchhHHHHhhCCCCCCccc
Q 045941 69 GGKGGLSTGDQSGRERAAQEWGIDVNESKV 98 (102)
Q Consensus 69 GrKGGlst~d~sg~Era~~e~Gi~iDEskf 98 (102)
|||||+++++++|+|||++| ||+||||||
T Consensus 81 GrKGG~~~~~~~g~era~~e-g~~~de~~~ 109 (109)
T PF00477_consen 81 GRKGGEATSDKSGGERAAEE-GIEIDESKF 109 (109)
T ss_pred HHhhCcccccccchHHHHHc-CCCcccccC
Confidence 99999999999999999999 999999998
No 2
>KOG4766 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.65 E-value=4 Score=27.69 Aligned_cols=29 Identities=48% Similarity=0.571 Sum_probs=20.9
Q ss_pred CCccchhhhhh-------HHHHHHHHhcCCccccCC
Q 045941 5 PDEDDMSSGQE-------RAELDAKARQGQTVVPGG 33 (102)
Q Consensus 5 ~~~~~Mas~q~-------r~eLd~rAr~GeTVVpgG 33 (102)
-||+|||+.|. -+||.++|.+.-..+-||
T Consensus 22 ~deed~a~kqkqK~e~ka~kel~Aka~~kg~~~g~G 57 (64)
T KOG4766|consen 22 LDEEDMAFKQKQKEEAKALKELKAKASQKGPLVGGG 57 (64)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc
Confidence 48999999872 456777777766666655
No 3
>COG3729 GsiB General stress protein [General function prediction only]
Probab=66.87 E-value=4.3 Score=28.03 Aligned_cols=46 Identities=30% Similarity=0.448 Sum_probs=25.8
Q ss_pred cCCCCCCCHHHHHHHHhhccCCccch--hhhhcchhhhhhccCCCCcc
Q 045941 31 PGGTGGKSPEAQEHLAEGRSRGGQTR--KEQLGTEGYQEMGGKGGLST 76 (102)
Q Consensus 31 pgGTGGksleAQe~LAEGrsrGGQtR--kEQLG~EGYqEMGrKGGlst 76 (102)
+||-+|---+--|+.+|--.+|||.= -+---.+=|+|.|+|||..+
T Consensus 17 ~gGr~g~~a~D~e~~~EigrkGGq~sgg~f~~D~e~a~eaG~KGG~~s 64 (73)
T COG3729 17 RGGRSGNFAEDRERASEIGRKGGQHSGGNFKNDPQRASEAGKKGGQPS 64 (73)
T ss_pred ccccccccccCHHHHHHHHHhccccCCCccccCHHHHHHhccccCCcc
Confidence 45544544455566666666666643 11122345777777777665
No 4
>PF10685 KGG: Stress-induced bacterial acidophilic repeat motif; InterPro: IPR019626 This repeat contains a highly conserved, characteristic sequence motif, KGG, that is recognised by plants and lower eukaryotes. Further downstream from this motif is a Walker A, nucleotide binding motif. YciG is expressed as part of a three-gene operon, yciGFE and this operon is induced by stress and is regulated by RpoS, which controls the general stress-response in E coli. YciG was shown to be important for stationary-phase resistance to thermal stress and in particular to acid stress [].
Probab=65.45 E-value=2.5 Score=23.27 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=12.8
Q ss_pred cchhhhhhccCCCCcc
Q 045941 61 GTEGYQEMGGKGGLST 76 (102)
Q Consensus 61 G~EGYqEMGrKGGlst 76 (102)
..|=|.|.|+|||.+.
T Consensus 6 d~e~~~eig~kGG~as 21 (23)
T PF10685_consen 6 DPEKAREIGRKGGQAS 21 (23)
T ss_pred CHHHHHHHHHhcCccc
Confidence 4567889999999865
No 5
>PF00477 LEA_5: Small hydrophilic plant seed protein; InterPro: IPR000389 This entry contains a number of bacterial proteins annotated as stress-induced and members of the plant LEA (late embryogenesis abundant) proteins, which are small hydrophilic plant seed proteins that are structurally related. These proteins contains from 83 to 153 amino acid residues and may play a role [, ] in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.
Probab=62.94 E-value=5.5 Score=29.13 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=24.3
Q ss_pred cchhhhhhccCCCCcccCCCchhHHHHh
Q 045941 61 GTEGYQEMGGKGGLSTGDQSGRERAAQE 88 (102)
Q Consensus 61 G~EGYqEMGrKGGlst~d~sg~Era~~e 88 (102)
..+=+.|-|+|||+++..++|.|.+.+.
T Consensus 33 aqe~laEggkKGGetr~e~~G~E~YqEi 60 (109)
T PF00477_consen 33 AQERLAEGGKKGGETRKEQHGKEFYQEI 60 (109)
T ss_pred HHHHHHHHHhhcccchhhhcchhHHHHH
Confidence 3456778899999999999999999876
No 6
>PF09072 TMA7: Translation machinery associated TMA7; InterPro: IPR015157 TMA7 plays a role in protein translation. Deletions of the TMA7 gene results in altered protein synthesis rates [].
Probab=45.93 E-value=20 Score=24.04 Aligned_cols=29 Identities=38% Similarity=0.463 Sum_probs=18.5
Q ss_pred CCccchhhhh-------hHHHHHHHHhcCCccccCC
Q 045941 5 PDEDDMSSGQ-------ERAELDAKARQGQTVVPGG 33 (102)
Q Consensus 5 ~~~~~Mas~q-------~r~eLd~rAr~GeTVVpgG 33 (102)
-||||+|..| ..++|.++|...-.++-||
T Consensus 21 ~DEeD~AfKqKqkee~k~lke~~~ka~~kgpl~~gg 56 (63)
T PF09072_consen 21 MDEEDKAFKQKQKEEQKALKELKAKAKGKGPLATGG 56 (63)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCC
Confidence 4899999877 2345666666655555443
No 7
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=29.94 E-value=42 Score=21.84 Aligned_cols=17 Identities=35% Similarity=0.306 Sum_probs=13.5
Q ss_pred cCCCCCCCHHHHHHHHh
Q 045941 31 PGGTGGKSPEAQEHLAE 47 (102)
Q Consensus 31 pgGTGGksleAQe~LAE 47 (102)
|.++-|-|++.|.+|-+
T Consensus 23 ~Se~CGysie~Q~~L~~ 39 (58)
T PF06858_consen 23 PSEQCGYSIEEQLSLFK 39 (58)
T ss_dssp TT-TTSS-HHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 89999999999999864
No 8
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=23.53 E-value=24 Score=28.78 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=14.4
Q ss_pred CchhHH---HHhhCCCCCCccc
Q 045941 80 SGRERA---AQEWGIDVNESKV 98 (102)
Q Consensus 80 sg~Era---~~e~Gi~iDEskf 98 (102)
+..||+ -++|||.|||.-|
T Consensus 198 pah~RvI~TLr~Wgv~vDEafF 219 (264)
T PF06189_consen 198 PAHERVIRTLRSWGVRVDEAFF 219 (264)
T ss_pred chhHHHHHHHHHcCCcHhHHHH
Confidence 344776 4689999999876
No 9
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=19.91 E-value=78 Score=22.10 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHhcCCccccCC
Q 045941 13 GQERAELDAKARQGQTVVPGG 33 (102)
Q Consensus 13 ~q~r~eLd~rAr~GeTVVpgG 33 (102)
.+++++|-...+.|+.||-.|
T Consensus 34 ~K~~~~ml~sL~kGD~VvT~g 54 (97)
T COG1862 34 MKEHQELLNSLKKGDEVVTIG 54 (97)
T ss_pred HHHHHHHHHhccCCCEEEEcC
Confidence 347889999999999999754
No 10
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=17.97 E-value=1.1e+02 Score=20.64 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.8
Q ss_pred hHHHHHHHHhcCCccc
Q 045941 15 ERAELDAKARQGQTVV 30 (102)
Q Consensus 15 ~r~eLd~rAr~GeTVV 30 (102)
.=++|=+|++.||.|+
T Consensus 13 ~~S~lL~rV~aGEev~ 28 (84)
T COG4118 13 HLSELLRRVRAGEEVI 28 (84)
T ss_pred HHHHHHHHHhCCCEEE
Confidence 5678999999999886
Done!