Query 045941
Match_columns 102
No_of_seqs 47 out of 49
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 12:10:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k6r_A Putative transferase PH 20.6 42 0.0014 24.8 1.6 27 15-41 115-143 (278)
2 2dpr_A CON-T(K7GLA); conantoxi 17.6 35 0.0012 18.8 0.5 8 61-68 1-8 (26)
3 2amw_A Hypothetical protein NE 16.2 79 0.0027 18.2 1.9 14 84-97 48-61 (83)
4 1ldd_A APC2WHB, anaphase promo 14.9 1.1E+02 0.0037 19.5 2.4 21 13-33 48-69 (74)
5 4a4z_A Antiviral helicase SKI2 12.5 1.8E+02 0.006 25.1 3.6 37 18-54 47-84 (997)
6 1v54_F VI, cytochrome C oxidas 11.6 99 0.0034 20.5 1.5 20 5-24 7-26 (98)
7 2l1n_A Uncharacterized protein 9.7 62 0.0021 23.1 -0.1 13 54-66 81-93 (120)
8 4ex8_A ALNA; alpha/beta/alpha- 9.6 1E+02 0.0036 24.7 1.2 47 2-48 237-297 (316)
9 2ava_A ACP I, acyl carrier pro 9.2 1.5E+02 0.0052 16.6 1.5 17 82-98 45-61 (82)
10 2kwl_A ACP, acyl carrier prote 8.9 1.7E+02 0.0059 16.5 1.7 16 83-98 51-66 (84)
No 1
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=20.57 E-value=42 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=22.9
Q ss_pred hHHHHHHHHhcCCcccc--CCCCCCCHHH
Q 045941 15 ERAELDAKARQGQTVVP--GGTGGKSPEA 41 (102)
Q Consensus 15 ~r~eLd~rAr~GeTVVp--gGTGGksleA 41 (102)
+|..+-..++.|++|+= -|+|+-++.|
T Consensus 115 er~ri~~~~~~g~~VlD~~aG~G~~~i~~ 143 (278)
T 3k6r_A 115 ERVRMAKVAKPDELVVDMFAGIGHLSLPI 143 (278)
T ss_dssp HHHHHHHHCCTTCEEEETTCTTTTTTHHH
T ss_pred HHHHHHHhcCCCCEEEEecCcCcHHHHHH
Confidence 68888888899999964 7899999876
No 2
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=17.60 E-value=35 Score=18.83 Aligned_cols=8 Identities=75% Similarity=1.153 Sum_probs=6.3
Q ss_pred cchhhhhh
Q 045941 61 GTEGYQEM 68 (102)
Q Consensus 61 G~EGYqEM 68 (102)
|.|-||||
T Consensus 1 geeeyqem 8 (26)
T 2dpr_A 1 GEEEYQEM 8 (26)
T ss_dssp CCHHHHHH
T ss_pred CcHHHHHH
Confidence 56788988
No 3
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=16.24 E-value=79 Score=18.20 Aligned_cols=14 Identities=7% Similarity=0.297 Sum_probs=11.2
Q ss_pred HHHHhhCCCCCCcc
Q 045941 84 RAAQEWGIDVNESK 97 (102)
Q Consensus 84 ra~~e~Gi~iDEsk 97 (102)
..++++||+|+...
T Consensus 48 ~lE~~fgi~i~~~~ 61 (83)
T 2amw_A 48 ALEEYFDFSVDDDE 61 (83)
T ss_dssp HHHHHTTCCCCTTT
T ss_pred HHHHHhCCeeCHHh
Confidence 56788899888776
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=14.88 E-value=1.1e+02 Score=19.51 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHhcCCcc-ccCC
Q 045941 13 GQERAELDAKARQGQTV-VPGG 33 (102)
Q Consensus 13 ~q~r~eLd~rAr~GeTV-VpgG 33 (102)
.|-++=|++++++|.-+ |.||
T Consensus 48 ~eL~~fL~~~v~e~kL~~~~gG 69 (74)
T 1ldd_A 48 QQLEGYLNTLADEGRLKYIANG 69 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTT
T ss_pred HHHHHHHHHHHhCCeEEEeCCC
Confidence 56788999999999988 4777
No 5
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=12.46 E-value=1.8e+02 Score=25.15 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=24.0
Q ss_pred HHHHHHhcCCccccCCCC-CCCHHHHHHHHhhccCCcc
Q 045941 18 ELDAKARQGQTVVPGGTG-GKSPEAQEHLAEGRSRGGQ 54 (102)
Q Consensus 18 eLd~rAr~GeTVVpgGTG-GksleAQe~LAEGrsrGGQ 54 (102)
-+..-......||-+-|| |||+-++--+......|++
T Consensus 47 aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~ 84 (997)
T 4a4z_A 47 AVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTK 84 (997)
T ss_dssp HHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCe
Confidence 344433334577888886 8998877777666555554
No 6
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=11.59 E-value=99 Score=20.54 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=15.9
Q ss_pred CCccchhhhhhHHHHHHHHh
Q 045941 5 PDEDDMSSGQERAELDAKAR 24 (102)
Q Consensus 5 ~~~~~Mas~q~r~eLd~rAr 24 (102)
|+..+-|.+-+|.||.+++.
T Consensus 7 Ptd~eqATGlEr~Ella~~~ 26 (98)
T 1v54_F 7 PTDEEQATGLEREVMLAARK 26 (98)
T ss_dssp CCHHHHCCHHHHHHHHHHHT
T ss_pred CChHHhccCHHHHHHHHHHc
Confidence 66666788889999998865
No 7
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=9.65 E-value=62 Score=23.08 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=10.5
Q ss_pred cchhhhhcchhhh
Q 045941 54 QTRKEQLGTEGYQ 66 (102)
Q Consensus 54 QtRkEQLG~EGYq 66 (102)
|-=|||||-.||+
T Consensus 81 QlLKe~LgFkGYk 93 (120)
T 2l1n_A 81 QLLKEELGFAGYS 93 (120)
T ss_dssp THHHHTTCCCCCC
T ss_pred HHHHHhcCCCcee
Confidence 3349999999996
No 8
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=9.59 E-value=1e+02 Score=24.73 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=26.4
Q ss_pred CCCCCccchhhhhh----HHHHHHHHhc---CCcccc-------CCCCCCCHHHHHHHHhh
Q 045941 2 NFTPDEDDMSSGQE----RAELDAKARQ---GQTVVP-------GGTGGKSPEAQEHLAEG 48 (102)
Q Consensus 2 ~~~~~~~~Mas~q~----r~eLd~rAr~---GeTVVp-------gGTGGksleAQe~LAEG 48 (102)
|=-|.|+.|..... .+-|.+..++ |.-|-| ==|+|+||+|+..|-..
T Consensus 237 nPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~vTPfLL~~i~elT~G~Sl~aNiaLv~n 297 (316)
T 4ex8_A 237 SPIDEQDAVDEAIVEAAIAEALAQCDQEGIVGNAVSPYLMKALARASGGMLPKAGRSLLLS 297 (316)
T ss_dssp CCCCGGGCCCHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCChhhcCCHHHHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 33466666665542 3333333333 333333 24899999999887643
No 9
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=9.23 E-value=1.5e+02 Score=16.62 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=12.4
Q ss_pred hhHHHHhhCCCCCCccc
Q 045941 82 RERAAQEWGIDVNESKV 98 (102)
Q Consensus 82 ~Era~~e~Gi~iDEskf 98 (102)
--+.++++||+|+...+
T Consensus 45 ~~~le~~fgi~i~~~~~ 61 (82)
T 2ava_A 45 VMNLEEEFGINVDEDKA 61 (82)
T ss_dssp HHHHHHHTTCCCCGGGS
T ss_pred HHHHHHHHCCccCHHHH
Confidence 34678888998887654
No 10
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=8.89 E-value=1.7e+02 Score=16.52 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=11.6
Q ss_pred hHHHHhhCCCCCCccc
Q 045941 83 ERAAQEWGIDVNESKV 98 (102)
Q Consensus 83 Era~~e~Gi~iDEskf 98 (102)
-+.++++||+|+...+
T Consensus 51 ~~le~~fgi~i~~~~~ 66 (84)
T 2kwl_A 51 YLLEEAFDDKIPENEA 66 (84)
T ss_dssp HHHHHHHTCCTTTTGG
T ss_pred HHHHHHHCCCcCHHHH
Confidence 3567888888877654
Done!