Query 045942
Match_columns 131
No_of_seqs 225 out of 1466
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.0 1.3E-09 2.9E-14 92.0 8.4 90 6-99 628-718 (1153)
2 PLN00113 leucine-rich repeat r 99.0 7.6E-10 1.6E-14 91.7 6.2 90 5-96 157-247 (968)
3 PLN03210 Resistant to P. syrin 98.9 1.8E-09 3.9E-14 91.2 6.2 93 4-99 794-907 (1153)
4 PLN00113 leucine-rich repeat r 98.9 2.7E-09 5.8E-14 88.5 6.3 91 4-96 180-271 (968)
5 KOG0532 Leucine-rich repeat (L 98.7 2.9E-09 6.2E-14 82.8 -0.0 113 4-128 136-248 (722)
6 KOG0617 Ras suppressor protein 98.7 1.6E-09 3.4E-14 73.5 -1.5 90 5-98 49-163 (264)
7 PF13855 LRR_8: Leucine rich r 98.5 8.8E-08 1.9E-12 53.9 3.4 56 13-71 3-59 (61)
8 KOG0617 Ras suppressor protein 98.5 7.6E-09 1.6E-13 70.2 -1.8 110 12-126 34-162 (264)
9 PLN03150 hypothetical protein; 98.4 2.8E-07 6E-12 73.8 5.0 81 13-95 420-500 (623)
10 PF13855 LRR_8: Leucine rich r 98.4 3.7E-07 8E-12 51.3 4.1 58 37-96 1-60 (61)
11 PLN03150 hypothetical protein; 98.4 5.8E-07 1.3E-11 71.9 5.4 93 4-98 434-528 (623)
12 KOG0472 Leucine-rich repeat pr 98.3 1.2E-07 2.6E-12 71.5 -0.2 88 5-96 428-539 (565)
13 KOG4658 Apoptotic ATPase [Sign 98.3 3.1E-07 6.6E-12 75.9 1.3 79 12-93 572-650 (889)
14 PRK15386 type III secretion pr 98.1 3.3E-06 7.2E-11 64.3 4.3 12 86-97 157-168 (426)
15 PF14580 LRR_9: Leucine-rich r 98.1 1.8E-06 4E-11 58.7 1.7 79 12-96 43-124 (175)
16 KOG4658 Apoptotic ATPase [Sign 98.1 3.4E-06 7.4E-11 69.9 3.4 85 12-98 546-631 (889)
17 KOG0444 Cytoskeletal regulator 98.0 4.4E-07 9.5E-12 72.2 -1.9 93 4-100 283-377 (1255)
18 KOG0472 Leucine-rich repeat pr 98.0 2.3E-06 5.1E-11 64.8 1.0 84 8-96 224-308 (565)
19 KOG0618 Serine/threonine phosp 98.0 1.9E-06 4.1E-11 70.5 0.6 82 8-94 379-461 (1081)
20 PF14580 LRR_9: Leucine-rich r 98.0 5E-06 1.1E-10 56.6 2.3 109 8-127 15-126 (175)
21 KOG0444 Cytoskeletal regulator 97.8 5.2E-06 1.1E-10 66.2 0.4 89 3-96 94-184 (1255)
22 PF12799 LRR_4: Leucine Rich r 97.7 7.3E-05 1.6E-09 39.3 3.8 38 12-53 2-39 (44)
23 PRK15386 type III secretion pr 97.7 5.9E-05 1.3E-09 57.6 4.2 62 12-81 53-114 (426)
24 PF12799 LRR_4: Leucine Rich r 97.6 5.3E-05 1.1E-09 39.9 1.8 39 37-77 1-39 (44)
25 cd00116 LRR_RI Leucine-rich re 97.5 1.3E-05 2.9E-10 58.3 -1.8 11 85-95 193-203 (319)
26 KOG4194 Membrane glycoprotein 97.4 1.7E-05 3.7E-10 62.7 -1.8 79 12-95 294-375 (873)
27 KOG0532 Leucine-rich repeat (L 97.4 1.8E-05 3.8E-10 62.3 -1.9 88 3-96 157-245 (722)
28 PRK15370 E3 ubiquitin-protein 97.2 0.0014 3.1E-08 53.8 6.8 71 12-93 200-270 (754)
29 PRK15370 E3 ubiquitin-protein 97.2 0.00078 1.7E-08 55.3 5.2 73 12-95 221-293 (754)
30 KOG4237 Extracellular matrix p 97.1 3.9E-05 8.5E-10 58.0 -2.9 79 12-93 68-148 (498)
31 KOG3665 ZYG-1-like serine/thre 97.0 0.00019 4E-09 58.4 0.4 60 34-96 170-231 (699)
32 PRK15387 E3 ubiquitin-protein 97.0 0.0009 2E-08 55.1 4.3 54 38-96 403-456 (788)
33 KOG4194 Membrane glycoprotein 97.0 0.00021 4.5E-09 56.8 0.3 37 8-47 217-255 (873)
34 cd00116 LRR_RI Leucine-rich re 96.9 0.00033 7.3E-09 50.9 0.7 37 60-96 192-232 (319)
35 KOG0618 Serine/threonine phosp 96.9 0.00019 4.1E-09 59.3 -0.7 80 12-96 46-125 (1081)
36 KOG4579 Leucine-rich repeat (L 96.8 9.2E-05 2E-09 48.7 -2.4 77 12-92 54-130 (177)
37 COG4886 Leucine-rich repeat (L 96.8 0.00047 1E-08 52.1 0.7 77 13-94 142-218 (394)
38 PRK15387 E3 ubiquitin-protein 96.6 0.0071 1.5E-07 50.0 6.5 19 110-128 441-459 (788)
39 KOG4237 Extracellular matrix p 96.6 0.0016 3.5E-08 49.6 2.4 86 8-96 270-357 (498)
40 COG4886 Leucine-rich repeat (L 96.4 0.0016 3.5E-08 49.2 1.7 80 12-96 117-197 (394)
41 KOG3864 Uncharacterized conser 96.2 0.00088 1.9E-08 46.5 -0.7 85 12-99 102-190 (221)
42 KOG2123 Uncharacterized conser 96.1 0.00035 7.6E-09 51.0 -3.2 78 12-96 20-99 (388)
43 KOG3665 ZYG-1-like serine/thre 96.0 0.0013 2.8E-08 53.7 -0.8 82 12-96 123-206 (699)
44 PF00560 LRR_1: Leucine Rich R 95.9 0.005 1.1E-07 27.2 1.3 9 13-21 2-10 (22)
45 KOG1259 Nischarin, modulator o 95.6 0.0015 3.4E-08 48.3 -1.5 39 57-96 370-410 (490)
46 PF13504 LRR_7: Leucine rich r 95.6 0.009 2E-07 24.7 1.5 15 38-53 2-16 (17)
47 KOG1644 U2-associated snRNP A' 95.6 0.019 4.1E-07 40.2 3.7 85 8-96 60-151 (233)
48 KOG4579 Leucine-rich repeat (L 95.4 0.0016 3.4E-08 43.0 -1.9 80 13-97 29-112 (177)
49 KOG1259 Nischarin, modulator o 94.9 0.006 1.3E-07 45.3 -0.4 82 36-127 283-365 (490)
50 KOG3207 Beta-tubulin folding c 94.7 0.021 4.5E-07 44.1 1.9 35 12-47 198-232 (505)
51 KOG3864 Uncharacterized conser 94.3 0.0039 8.5E-08 43.4 -2.4 40 57-99 121-165 (221)
52 KOG0531 Protein phosphatase 1, 93.9 0.046 1E-06 41.9 2.5 81 8-95 91-172 (414)
53 KOG3207 Beta-tubulin folding c 93.8 0.038 8.3E-07 42.7 1.9 36 12-48 173-208 (505)
54 KOG1644 U2-associated snRNP A' 93.0 0.2 4.4E-06 35.2 4.1 80 12-97 43-125 (233)
55 KOG2120 SCF ubiquitin ligase, 92.0 0.032 6.9E-07 41.5 -0.8 61 34-96 310-374 (419)
56 KOG0531 Protein phosphatase 1, 91.8 0.051 1.1E-06 41.6 0.1 82 8-96 114-197 (414)
57 KOG2739 Leucine-rich acidic nu 91.2 0.091 2E-06 37.9 0.9 63 34-97 62-128 (260)
58 smart00369 LRR_TYP Leucine-ric 90.9 0.17 3.7E-06 22.9 1.4 18 37-55 2-19 (26)
59 smart00370 LRR Leucine-rich re 90.9 0.17 3.7E-06 22.9 1.4 18 37-55 2-19 (26)
60 KOG1859 Leucine-rich repeat pr 90.7 0.029 6.2E-07 46.2 -2.2 35 34-70 184-218 (1096)
61 KOG2739 Leucine-rich acidic nu 90.2 0.28 6E-06 35.4 2.6 83 8-95 61-153 (260)
62 KOG1859 Leucine-rich repeat pr 90.2 0.017 3.7E-07 47.5 -3.9 38 12-54 188-225 (1096)
63 KOG2120 SCF ubiquitin ligase, 89.0 0.22 4.7E-06 37.2 1.3 57 12-72 314-374 (419)
64 PF13306 LRR_5: Leucine rich r 87.0 3.8 8.2E-05 25.4 6.1 82 6-94 6-90 (129)
65 KOG2123 Uncharacterized conser 86.5 0.038 8.1E-07 40.7 -3.8 75 12-91 42-123 (388)
66 KOG4341 F-box protein containi 84.3 0.76 1.6E-05 35.7 2.1 39 12-50 295-333 (483)
67 smart00367 LRR_CC Leucine-rich 83.3 1 2.2E-05 20.3 1.6 14 37-50 2-15 (26)
68 PF13306 LRR_5: Leucine rich r 81.5 6.1 0.00013 24.5 5.2 81 6-94 29-112 (129)
69 KOG4341 F-box protein containi 81.0 1.3 2.8E-05 34.4 2.2 14 12-25 321-334 (483)
70 KOG1947 Leucine rich repeat pr 79.3 0.48 1E-05 36.2 -0.5 15 84-98 294-308 (482)
71 smart00364 LRR_BAC Leucine-ric 78.7 1.5 3.2E-05 20.2 1.2 17 38-55 3-19 (26)
72 KOG1909 Ran GTPase-activating 78.3 0.73 1.6E-05 34.9 0.2 82 12-96 158-252 (382)
73 KOG2982 Uncharacterized conser 76.5 1.7 3.6E-05 32.7 1.6 14 34-47 94-107 (418)
74 KOG1947 Leucine rich repeat pr 75.2 0.4 8.8E-06 36.6 -2.0 86 12-99 189-283 (482)
75 PF13516 LRR_6: Leucine Rich r 65.3 5.2 0.00011 17.4 1.4 11 37-47 2-12 (24)
76 smart00365 LRR_SD22 Leucine-ri 47.9 17 0.00036 16.6 1.5 11 37-47 2-12 (26)
77 KOG0473 Leucine-rich repeat pr 44.8 0.75 1.6E-05 33.3 -4.9 80 12-96 43-122 (326)
78 smart00368 LRR_RI Leucine rich 33.8 32 0.0007 15.6 1.3 11 37-47 2-12 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.01 E-value=1.3e-09 Score=91.99 Aligned_cols=90 Identities=28% Similarity=0.543 Sum_probs=69.4
Q ss_pred CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHV 84 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l 84 (131)
..+..+ +|+.|+++++..++.+|. + ..+++|+.|++.+|..+..+|..++++++|+.|++.+|..++.+|..+ ++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-l--s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-L--SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-c--ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 445566 788888877777777764 4 567888888888888888888888888888888888888888888765 67
Q ss_pred CCcCeEeecCCchhh
Q 045942 85 TTLKSLAIAECPALS 99 (131)
Q Consensus 85 ~~L~~L~i~~~~~l~ 99 (131)
++|+.|.+.+|..+.
T Consensus 704 ~sL~~L~Lsgc~~L~ 718 (1153)
T PLN03210 704 KSLYRLNLSGCSRLK 718 (1153)
T ss_pred CCCCEEeCCCCCCcc
Confidence 788888888886553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.99 E-value=7.6e-10 Score=91.69 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=52.2
Q ss_pred CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCC
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHH 83 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~ 83 (131)
|..++++ +|++|+++++.....+|..+ +.+++|++|++++|.....+|..++.+++|++|++.+|.....+|..+..
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSL--TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhh--hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 4445555 66666666554444555555 55666666666666444455555666666666666665544455666666
Q ss_pred CCCcCeEeecCCc
Q 045942 84 VTTLKSLAIAECP 96 (131)
Q Consensus 84 l~~L~~L~i~~~~ 96 (131)
+++|++|++.+|.
T Consensus 235 l~~L~~L~L~~n~ 247 (968)
T PLN00113 235 LTSLNHLDLVYNN 247 (968)
T ss_pred CCCCCEEECcCce
Confidence 6666666665553
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.93 E-value=1.8e-09 Score=91.23 Aligned_cols=93 Identities=18% Similarity=0.360 Sum_probs=60.0
Q ss_pred CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC--------------------CCCCCCccc
Q 045942 4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL--------------------PGSLKDLEA 62 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l--------------------p~~l~~l~s 62 (131)
.|.+++++ +|+.|++++|..++.+|... .+++|+.|++++|..+..+ |..++.+++
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~ 870 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSN 870 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCC
Confidence 35556666 67777777777777776554 4566666666666554433 333445666
Q ss_pred ccccccccccccCcCCCCCCCCCCcCeEeecCCchhh
Q 045942 63 LETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALS 99 (131)
Q Consensus 63 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~~l~ 99 (131)
|+.|++.+|+++..+|..+..+++|+.+++.+|..+.
T Consensus 871 L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 871 LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 7777777777777777666667777777777776654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.90 E-value=2.7e-09 Score=88.47 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942 4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH 82 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~ 82 (131)
.|..++++ +|++|++++|.....+|..+ +.+++|+.|++++|.....+|..++.+++|++|++.+|...+.+|..+.
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPREL--GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHH--cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 45667777 88888888876666677777 7888888888888755556777777888888888877765566777777
Q ss_pred CCCCcCeEeecCCc
Q 045942 83 HVTTLKSLAIAECP 96 (131)
Q Consensus 83 ~l~~L~~L~i~~~~ 96 (131)
++++|++|++.+|.
T Consensus 258 ~l~~L~~L~L~~n~ 271 (968)
T PLN00113 258 NLKNLQYLFLYQNK 271 (968)
T ss_pred CCCCCCEEECcCCe
Confidence 77777777777654
No 5
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=2.9e-09 Score=82.80 Aligned_cols=113 Identities=22% Similarity=0.329 Sum_probs=69.9
Q ss_pred CCCCCCCCccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCC
Q 045942 4 HDRKNTRPHLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHH 83 (131)
Q Consensus 4 ~~~~i~~l~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~ 83 (131)
.|..++.+-|+.|.+++ ++++.+|+++ +.++.|..|+.+.| .+..+|..++.+.+|+.|.++.+ .+..+|+++..
T Consensus 136 lp~~lC~lpLkvli~sN-Nkl~~lp~~i--g~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~ 210 (722)
T KOG0532|consen 136 LPDGLCDLPLKVLIVSN-NKLTSLPEEI--GLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCS 210 (722)
T ss_pred CChhhhcCcceeEEEec-CccccCCccc--ccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhC
Confidence 34445555555555554 3455666555 55556666666655 55566655666666666666553 45566666665
Q ss_pred CCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942 84 VTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 84 l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 128 (131)
| .|..|++++ .++. ...-++.+++|++.+.++.|..||
T Consensus 211 L-pLi~lDfSc-Nkis-----~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 211 L-PLIRLDFSC-NKIS-----YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred C-ceeeeeccc-Ccee-----ecchhhhhhhhheeeeeccCCCCC
Confidence 5 666777653 3332 234467889999999999999887
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.68 E-value=1.6e-09 Score=73.49 Aligned_cols=90 Identities=22% Similarity=0.272 Sum_probs=51.4
Q ss_pred CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccc------------
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARC------------ 71 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c------------ 71 (131)
|+.|..+ +|+.|.+++. .++.+|..+ ..++.|+.|.+.-+ .+..+|.++|.++.|+.|++..+
T Consensus 49 ppnia~l~nlevln~~nn-qie~lp~~i--ssl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNN-QIEELPTSI--SSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred CCcHHHhhhhhhhhcccc-hhhhcChhh--hhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchh
Confidence 4445555 6666666543 455666555 55555555555432 45555555555555555555442
Q ss_pred ------------cccCcCCCCCCCCCCcCeEeecCCchh
Q 045942 72 ------------PKLSSLPEDMHHVTTLKSLAIAECPAL 98 (131)
Q Consensus 72 ------------~~l~~lp~~~~~l~~L~~L~i~~~~~l 98 (131)
...+.+|..++.+++|+.|.++++..+
T Consensus 125 ~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 125 YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh
Confidence 234556777777777777777766543
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=8.8e-08 Score=53.90 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=27.5
Q ss_pred cceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccc
Q 045942 13 LRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARC 71 (131)
Q Consensus 13 L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c 71 (131)
|++|++++| ++..+|.+.| ..+++|+.|+++++ .+..++. .+..+++|++|++++|
T Consensus 3 L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSS-TESEECTTTT-TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 455555554 4555553332 44555555555544 4444442 3445555555555443
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.52 E-value=7.6e-09 Score=70.22 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=83.8
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
+.+.|.++.. ++..+|+.+ ..+.+|+.|.++++ .++.+|..+..++.|+.|.+. ...+..+|.+++.++.|+.|+
T Consensus 34 ~ITrLtLSHN-Kl~~vppni--a~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 34 NITRLTLSHN-KLTVVPPNI--AELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhcccC-ceeecCCcH--HHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcCccccCCCchhhhhh
Confidence 6777888874 788899988 88999999999988 899999999999999999986 467889999999999999998
Q ss_pred ecCCch--------------hhhhcCC-----CCCCCCCcccCCCeeEecCccc
Q 045942 92 IAECPA--------------LSERCKP-----PTGEDWPKIAHIPEILLDDKMI 126 (131)
Q Consensus 92 i~~~~~--------------l~~~~~~-----~~~~~~~~i~~l~~l~~~~~~~ 126 (131)
+..+.. +...+.. ....+..+++.++.+..+++..
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence 764321 1111111 1233455677777777777664
No 9
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=2.8e-07 Score=73.77 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=41.4
Q ss_pred cceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEee
Q 045942 13 LRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAI 92 (131)
Q Consensus 13 L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i 92 (131)
++.|++.++..-..+|..+ ..+++|+.|+++++.....+|..++.+++|+.|++++|.....+|..+.++++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i--~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI--SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHH--hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4445555443333445444 55555555555555333345555555555555555554444445555555555555555
Q ss_pred cCC
Q 045942 93 AEC 95 (131)
Q Consensus 93 ~~~ 95 (131)
.++
T Consensus 498 s~N 500 (623)
T PLN03150 498 NGN 500 (623)
T ss_pred cCC
Confidence 544
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=3.7e-07 Score=51.31 Aligned_cols=58 Identities=26% Similarity=0.450 Sum_probs=49.5
Q ss_pred CCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCC-CCCCCCCcCeEeecCCc
Q 045942 37 DTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPE-DMHHVTTLKSLAIAECP 96 (131)
Q Consensus 37 ~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~~~ 96 (131)
|+|+.|++++| ++..+|. .+..+++|++|+++++ .+..+++ .+..+++|++|++.+|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57899999999 8999984 6788999999999875 5777765 57899999999999874
No 11
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=5.8e-07 Score=71.95 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=76.7
Q ss_pred CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942 4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH 82 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~ 82 (131)
.|..++.+ +|+.|+++++.....+|..+ +.+++|+.|+++++.....+|+.++.+++|+.|++++|.....+|..+.
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~--~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 45567788 99999999986556889888 8999999999999966668999999999999999999887778898776
Q ss_pred CC-CCcCeEeecCCchh
Q 045942 83 HV-TTLKSLAIAECPAL 98 (131)
Q Consensus 83 ~l-~~L~~L~i~~~~~l 98 (131)
.+ .++..+.+.+++.+
T Consensus 512 ~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 512 GRLLHRASFNFTDNAGL 528 (623)
T ss_pred hccccCceEEecCCccc
Confidence 53 35677888776643
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.29 E-value=1.2e-07 Score=71.51 Aligned_cols=88 Identities=19% Similarity=0.245 Sum_probs=63.0
Q ss_pred CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCC----------------------CCcccCCC-CCCCc
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDC----------------------PNFMALPG-SLKDL 60 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~----------------------~~l~~lp~-~l~~l 60 (131)
|..++.+ +|..|++++. .+-.+|..+ +.+-.|+.|+++.+ ..++++++ ++++|
T Consensus 428 ~~~l~~l~kLt~L~L~NN-~Ln~LP~e~--~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNN-LLNDLPEEM--GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred hHHHHhhhcceeeecccc-hhhhcchhh--hhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 3344555 6677777663 466777666 66667777777764 13344443 36788
Q ss_pred ccccccccccccccCcCCCCCCCCCCcCeEeecCCc
Q 045942 61 EALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 61 ~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~ 96 (131)
.+|.+|++.+ ..+..+|+.++++++|++|.++++|
T Consensus 505 ~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 505 RNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 8999999976 5688999999999999999999887
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.26 E-value=3.1e-07 Score=75.89 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=39.5
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
.|++|++++|..+..+|..+ +.+-+|++|+++++ .+..+|.+++++..|.+|++..+..+..+|.....+++|++|.
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I--~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSI--GELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred ceEEEECCCCCccCcCChHH--hhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 45555555555555555555 44555555555544 4445555555555555555554444444443333345555555
Q ss_pred ec
Q 045942 92 IA 93 (131)
Q Consensus 92 i~ 93 (131)
+.
T Consensus 649 l~ 650 (889)
T KOG4658|consen 649 LP 650 (889)
T ss_pred ee
Confidence 43
No 14
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=3.3e-06 Score=64.29 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=7.2
Q ss_pred CcCeEeecCCch
Q 045942 86 TLKSLAIAECPA 97 (131)
Q Consensus 86 ~L~~L~i~~~~~ 97 (131)
+|++|.+.+|..
T Consensus 157 SLk~L~Is~c~~ 168 (426)
T PRK15386 157 SLKTLSLTGCSN 168 (426)
T ss_pred cccEEEecCCCc
Confidence 566666666553
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.06 E-value=1.8e-06 Score=58.69 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=19.3
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCC-CCcccccccccccccccCcCCC--CCCCCCCcC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSL-KDLEALETLVIARCPKLSSLPE--DMHHVTTLK 88 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l-~~l~sL~~L~l~~c~~l~~lp~--~~~~l~~L~ 88 (131)
+|+.|+++++ .+..++ ++ ..++.|++|+++++ .+.++.+.+ ..+++|++|.+.++ ++..+-. .+..+++|+
T Consensus 43 ~L~~L~Ls~N-~I~~l~-~l--~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 43 KLEVLDLSNN-QITKLE-GL--PGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T--EEE-TTS---S--T-T------TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--
T ss_pred CCCEEECCCC-CCcccc-Cc--cChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcc
Confidence 4444444443 233332 23 34444555544444 344443222 13445555555432 2332221 223344555
Q ss_pred eEeecCCc
Q 045942 89 SLAIAECP 96 (131)
Q Consensus 89 ~L~i~~~~ 96 (131)
.|++.++|
T Consensus 117 ~L~L~~NP 124 (175)
T PF14580_consen 117 VLSLEGNP 124 (175)
T ss_dssp EEE-TT-G
T ss_pred eeeccCCc
Confidence 55555554
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.05 E-value=3.4e-06 Score=69.86 Aligned_cols=85 Identities=21% Similarity=0.314 Sum_probs=71.1
Q ss_pred ccceEeecCcCC-CcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeE
Q 045942 12 HLRRVVIGEITQ-FLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSL 90 (131)
Q Consensus 12 ~L~~L~i~~c~~-l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L 90 (131)
.|++|-+.+... +..++.++| ..++.|..|++++|..+..+|..++.+-+|++|++.+. .+..+|.+++++..|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff-~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFF-RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHH-hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 577777766432 566665544 78999999999999999999999999999999999874 688999999999999999
Q ss_pred eecCCchh
Q 045942 91 AIAECPAL 98 (131)
Q Consensus 91 ~i~~~~~l 98 (131)
++..+..+
T Consensus 624 nl~~~~~l 631 (889)
T KOG4658|consen 624 NLEVTGRL 631 (889)
T ss_pred cccccccc
Confidence 98866544
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.04 E-value=4.4e-07 Score=72.16 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=72.8
Q ss_pred CCCCCCCC-ccceEeecCcC-CCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC
Q 045942 4 HDRKNTRP-HLRRVVIGEIT-QFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM 81 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~-~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~ 81 (131)
.|+.++.+ .|+.|+..++. ..+.+|+++ +.+..|+.+...++ +++-+|+++..+..|+.|.++ |+.+-.+|+.+
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaI 358 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLD-HNRLITLPEAI 358 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccch--hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccc-ccceeechhhh
Confidence 35556666 67777665432 245678888 78888888888776 788889999899999999884 56788899999
Q ss_pred CCCCCcCeEeecCCchhhh
Q 045942 82 HHVTTLKSLAIAECPALSE 100 (131)
Q Consensus 82 ~~l~~L~~L~i~~~~~l~~ 100 (131)
.-++.|+.|++..+|++..
T Consensus 359 HlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhcCCcceeeccCCcCccC
Confidence 9999999999999998753
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.97 E-value=2.3e-06 Score=64.75 Aligned_cols=84 Identities=29% Similarity=0.349 Sum_probs=65.5
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
|+.. .|++|++.. +.++.+|.+.. ..++++..|++.++ +++++|.++.-+++|+.|++++ ..+.++|..++++ .
T Consensus 224 f~gcs~L~Elh~g~-N~i~~lpae~~-~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-h 298 (565)
T KOG0472|consen 224 FPGCSLLKELHVGE-NQIEMLPAEHL-KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-H 298 (565)
T ss_pred CCccHHHHHHHhcc-cHHHhhHHHHh-cccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCcccccc-e
Confidence 4444 445555433 24555564442 47899999999988 8999999999999999999987 4689999999999 9
Q ss_pred cCeEeecCCc
Q 045942 87 LKSLAIAECP 96 (131)
Q Consensus 87 L~~L~i~~~~ 96 (131)
|+.|.+.|+|
T Consensus 299 L~~L~leGNP 308 (565)
T KOG0472|consen 299 LKFLALEGNP 308 (565)
T ss_pred eeehhhcCCc
Confidence 9999999888
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.97 E-value=1.9e-06 Score=70.51 Aligned_cols=82 Identities=22% Similarity=0.311 Sum_probs=65.4
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
+-++ +|++|+++++ .+.++|...+ .++..|+.|+++++ +++.+|+.+..++.|++|...+ ..+..+| ++..++.
T Consensus 379 l~~~~hLKVLhLsyN-rL~~fpas~~-~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYN-RLNSFPASKL-RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQ 453 (1081)
T ss_pred hccccceeeeeeccc-ccccCCHHHH-hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCc
Confidence 3445 8999999875 6888996544 78899999999998 7999998888888899887755 4577788 6777788
Q ss_pred cCeEeecC
Q 045942 87 LKSLAIAE 94 (131)
Q Consensus 87 L~~L~i~~ 94 (131)
|+.++++.
T Consensus 454 L~~lDlS~ 461 (1081)
T KOG0618|consen 454 LKVLDLSC 461 (1081)
T ss_pred ceEEeccc
Confidence 88888863
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.96 E-value=5e-06 Score=56.56 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=35.7
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhcc-CCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC-CCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQC-CTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM-HHV 84 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~-~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~-~~l 84 (131)
+.+. .+++|+++++ .++.+. .+ + .+.+|+.|++++| .+..+. ++..++.|++|+++++ .+.++...+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n-~I~~Ie-~L--~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGN-QISTIE-NL--GATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNL 87 (175)
T ss_dssp -----------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccc-cccccc-ch--hhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCC-CCCccccchHHhC
Confidence 4445 7899999885 566663 44 4 5789999999998 788884 6888999999999874 677886554 357
Q ss_pred CCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 85 TTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 85 ~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
++|++|++.++.- .+ .. .-.....++++..+.+.+|++.
T Consensus 88 p~L~~L~L~~N~I-~~-l~--~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNNKI-SD-LN--ELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS----S-CC--CCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCEEECcCCcC-CC-hH--HhHHHHcCCCcceeeccCCccc
Confidence 8999999976542 10 00 0111234555666777777764
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.80 E-value=5.2e-06 Score=66.25 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=62.7
Q ss_pred CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC
Q 045942 3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED 80 (131)
Q Consensus 3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~ 80 (131)
-.|..|-++ -|.+|+++.+ ++.+.|.++ ....++-.|.++++ ++..+|.. +-+++-|-.|++++ +.++.+|+.
T Consensus 94 GiP~diF~l~dLt~lDLShN-qL~EvP~~L--E~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ 168 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHN-QLREVPTNL--EYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ 168 (1255)
T ss_pred CCCchhcccccceeeecchh-hhhhcchhh--hhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhcccc-chhhhcCHH
Confidence 356667777 7778888764 577777776 66677777777766 67777743 34567777777766 467777777
Q ss_pred CCCCCCcCeEeecCCc
Q 045942 81 MHHVTTLKSLAIAECP 96 (131)
Q Consensus 81 ~~~l~~L~~L~i~~~~ 96 (131)
+..+..|++|.++++|
T Consensus 169 ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNP 184 (1255)
T ss_pred HHHHhhhhhhhcCCCh
Confidence 7777777777777776
No 22
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=7.3e-05 Score=39.32 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=24.1
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL 53 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l 53 (131)
+|++|+++++ .++.+|..+ +.+++|+.|+++++ .+..+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l--~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPEL--SNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHG--TTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCC-CCcccCchH--hCCCCCCEEEecCC-CCCCC
Confidence 4677777765 566777656 67777777777777 44444
No 23
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=5.9e-05 Score=57.63 Aligned_cols=62 Identities=37% Similarity=0.722 Sum_probs=47.7
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM 81 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~ 81 (131)
++++|++++| .++++|. + .++|+.|.+++|..+..+|..+. ++|+.|.+.+|..+..+|..+
T Consensus 53 ~l~~L~Is~c-~L~sLP~-L----P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 53 ASGRLYIKDC-DIESLPV-L----PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred CCCEEEeCCC-CCcccCC-C----CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccccc
Confidence 7888899888 6888872 2 25688899998888888886553 688888888887787777654
No 24
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=5.3e-05 Score=39.86 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=27.4
Q ss_pred CCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcC
Q 045942 37 DTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSL 77 (131)
Q Consensus 37 ~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~l 77 (131)
++|++|+++++ .+..+|..+++|+.|+.|++++|+ +..+
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 46788888887 677787667888888888888763 4444
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.45 E-value=1.3e-05 Score=58.34 Aligned_cols=11 Identities=18% Similarity=0.290 Sum_probs=5.2
Q ss_pred CCcCeEeecCC
Q 045942 85 TTLKSLAIAEC 95 (131)
Q Consensus 85 ~~L~~L~i~~~ 95 (131)
++|++|++++|
T Consensus 193 ~~L~~L~L~~n 203 (319)
T cd00116 193 CNLEVLDLNNN 203 (319)
T ss_pred CCCCEEeccCC
Confidence 34455554444
No 26
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.40 E-value=1.7e-05 Score=62.75 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=36.8
Q ss_pred ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcC
Q 045942 12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLK 88 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~ 88 (131)
+|+.|+++.+ .+..+. +.+ ...++|+.|+++++ .+.++++ .+..+..|++|.++.+ .+..+.++ +..+.+|+
T Consensus 294 ~L~~L~lS~N-aI~rih~d~W--sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 294 SLEQLDLSYN-AIQRIHIDSW--SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLH 368 (873)
T ss_pred hhhhhccchh-hhheeecchh--hhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhh
Confidence 5555555542 343332 223 34456666666655 5555553 2444455555555442 23333332 33344555
Q ss_pred eEeecCC
Q 045942 89 SLAIAEC 95 (131)
Q Consensus 89 ~L~i~~~ 95 (131)
+|+++.+
T Consensus 369 ~LdLr~N 375 (873)
T KOG4194|consen 369 KLDLRSN 375 (873)
T ss_pred hhcCcCC
Confidence 5554443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.37 E-value=1.8e-05 Score=62.26 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=62.3
Q ss_pred CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC
Q 045942 3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM 81 (131)
Q Consensus 3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~ 81 (131)
..|..++.. .|..|+.+.| ++.++|..+ +.+.+|+.|.+..+ .+..+|+++..| .|..|+++ |+++..+|-++
T Consensus 157 ~lp~~ig~~~tl~~ld~s~n-ei~slpsql--~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfS-cNkis~iPv~f 230 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKN-EIQSLPSQL--GYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFS-CNKISYLPVDF 230 (722)
T ss_pred cCCcccccchhHHHhhhhhh-hhhhchHHh--hhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecc-cCceeecchhh
Confidence 346667755 7888888765 567788777 77788888777776 666777766643 34567764 56777777777
Q ss_pred CCCCCcCeEeecCCc
Q 045942 82 HHVTTLKSLAIAECP 96 (131)
Q Consensus 82 ~~l~~L~~L~i~~~~ 96 (131)
.+++.|++|.+.++|
T Consensus 231 r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhheeeeeccCC
Confidence 777777777777766
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.17 E-value=0.0014 Score=53.83 Aligned_cols=71 Identities=17% Similarity=0.438 Sum_probs=35.7
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
+|+.|+++++ ++..+|..+ . ++|+.|++++| .+..+|..+. .+|+.|++++| .+..+|..+. ++|+.|+
T Consensus 200 ~L~~L~Ls~N-~LtsLP~~l--~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNN-ELKSLPENL--Q--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLD 268 (754)
T ss_pred CCcEEEecCC-CCCcCChhh--c--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEE
Confidence 5666666654 466666544 2 45666666665 4555554332 34455555443 2334444332 2444444
Q ss_pred ec
Q 045942 92 IA 93 (131)
Q Consensus 92 i~ 93 (131)
+.
T Consensus 269 Ls 270 (754)
T PRK15370 269 LF 270 (754)
T ss_pred Cc
Confidence 44
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.15 E-value=0.00078 Score=55.32 Aligned_cols=73 Identities=26% Similarity=0.409 Sum_probs=44.7
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
+|++|++++| .++.+|..+ . ++|+.|++++| .+..+|..+. .+|+.|++++ .++..+|..+. ++|+.|+
T Consensus 221 nL~~L~Ls~N-~LtsLP~~l--~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~ 289 (754)
T PRK15370 221 NIKTLYANSN-QLTSIPATL--P--DTIQEMELSIN-RITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLS 289 (754)
T ss_pred CCCEEECCCC-ccccCChhh--h--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEE
Confidence 6788888765 467777654 2 35777777776 4556665443 4566666654 35556665443 3566666
Q ss_pred ecCC
Q 045942 92 IAEC 95 (131)
Q Consensus 92 i~~~ 95 (131)
+.+|
T Consensus 290 Ls~N 293 (754)
T PRK15370 290 VYDN 293 (754)
T ss_pred CCCC
Confidence 6554
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.05 E-value=3.9e-05 Score=58.03 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=56.0
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~ 89 (131)
.-..+.+.. +.+..||++.| +.+++|+.|+++++ .+..+ |..+..+.+|..|-+.+..+++.+|.. +..+.+|+.
T Consensus 68 ~tveirLdq-N~I~~iP~~aF-~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAF-KTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEecc-CCcccCChhhc-cchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 445566654 46888887766 78888888988887 56665 455677788877777776788888865 566666666
Q ss_pred Eeec
Q 045942 90 LAIA 93 (131)
Q Consensus 90 L~i~ 93 (131)
|.+.
T Consensus 145 LllN 148 (498)
T KOG4237|consen 145 LLLN 148 (498)
T ss_pred HhcC
Confidence 6544
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.02 E-value=0.00019 Score=58.41 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=41.4
Q ss_pred cCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCC--CCCCCCCCcCeEeecCCc
Q 045942 34 CCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLP--EDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 34 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~~~ 96 (131)
.+||+|..|+|+++ ++..+ .+++++++|+.|.+.+.+... -. ..+.+|++|+.|+|+.-.
T Consensus 170 ~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 170 ASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFES-YQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCc-hhhHHHHhcccCCCeeeccccc
Confidence 47788888888887 66666 577888888888876654322 11 245677888888887544
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.02 E-value=0.0009 Score=55.09 Aligned_cols=54 Identities=24% Similarity=0.441 Sum_probs=32.6
Q ss_pred CcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEeecCCc
Q 045942 38 TLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 38 ~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~ 96 (131)
+|+.|+++++ .+..+|.. ..+|+.|+++++ .+..+|..+..+++|+.|++.+++
T Consensus 403 ~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 403 ELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 3444444444 34444431 234566666653 466777777778888888888776
No 33
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.97 E-value=0.00021 Score=56.81 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=18.8
Q ss_pred CCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDC 47 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~ 47 (131)
+.++ +|+.|++..+ .++... ..+ +.+++|+.|.+..+
T Consensus 217 Fk~L~~L~~LdLnrN-~irive~ltF--qgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRN-RIRIVEGLTF--QGLPSLQNLKLQRN 255 (873)
T ss_pred hhhcchhhhhhcccc-ceeeehhhhh--cCchhhhhhhhhhc
Confidence 4455 6777776542 333221 122 45666666655544
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.87 E-value=0.00033 Score=50.95 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=17.6
Q ss_pred ccccccccccccccc----CcCCCCCCCCCCcCeEeecCCc
Q 045942 60 LEALETLVIARCPKL----SSLPEDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 60 l~sL~~L~l~~c~~l----~~lp~~~~~l~~L~~L~i~~~~ 96 (131)
+++|+.|++++|..- ..++..+..+++|++|++.+|+
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 345666666555311 1122233344566666666553
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.87 E-value=0.00019 Score=59.29 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=63.4
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
+|+.|++++. ....+|..+ ..++.|+.|.++.+ .++++|....++.+|+++.+. |..+..+|.++..+.+|+.|+
T Consensus 46 ~L~~l~lsnn-~~~~fp~~i--t~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~-~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNN-QISSFPIQI--TLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLK-NNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeecccc-ccccCCchh--hhHHHHhhcccchh-hHhhCchhhhhhhcchhheec-cchhhcCchhHHhhhcccccc
Confidence 6888888875 566788777 67788888888865 788888778888888888884 578888888888888888888
Q ss_pred ecCCc
Q 045942 92 IAECP 96 (131)
Q Consensus 92 i~~~~ 96 (131)
++.+.
T Consensus 121 lS~N~ 125 (1081)
T KOG0618|consen 121 LSFNH 125 (1081)
T ss_pred cchhc
Confidence 77543
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.81 E-value=9.2e-05 Score=48.75 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=49.7
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
.|+..+++++ .++.+|+.+. ..++.++.|.+.++ .+..+|+++..+++|+.|++++++ +...|.-+..+.+|..|+
T Consensus 54 el~~i~ls~N-~fk~fp~kft-~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDN-GFKKFPKKFT-IKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccc-hhhhCCHHHh-hccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhc
Confidence 4555566663 5667776553 45667778888776 677788778888888888887754 444555544444554444
Q ss_pred e
Q 045942 92 I 92 (131)
Q Consensus 92 i 92 (131)
.
T Consensus 130 s 130 (177)
T KOG4579|consen 130 S 130 (177)
T ss_pred C
Confidence 3
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.75 E-value=0.00047 Score=52.09 Aligned_cols=77 Identities=23% Similarity=0.375 Sum_probs=32.0
Q ss_pred cceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEee
Q 045942 13 LRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAI 92 (131)
Q Consensus 13 L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i 92 (131)
|+.|++++. .+..+|..+ +.++.|+.|+++++ .+..+|...+..+.|+.|.++++ .+..+|..+.....|+++.+
T Consensus 142 L~~L~l~~N-~i~~l~~~~--~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 142 LKELDLSDN-KIESLPSPL--RNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDL 216 (394)
T ss_pred ccccccccc-chhhhhhhh--hccccccccccCCc-hhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhh
Confidence 444444432 344443333 44444555544444 34444433334444444444442 34444443222223444444
Q ss_pred cC
Q 045942 93 AE 94 (131)
Q Consensus 93 ~~ 94 (131)
.+
T Consensus 217 ~~ 218 (394)
T COG4886 217 SN 218 (394)
T ss_pred cC
Confidence 33
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.60 E-value=0.0071 Score=49.98 Aligned_cols=19 Identities=5% Similarity=0.120 Sum_probs=12.0
Q ss_pred CCcccCCCeeEecCcccCC
Q 045942 110 WPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 110 ~~~i~~l~~l~~~~~~~~~ 128 (131)
+..+.++..+.+.+|.+..
T Consensus 441 l~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 441 LIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred HhhccCCCeEECCCCCCCc
Confidence 4455666677777776653
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.57 E-value=0.0016 Score=49.60 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPEDMHHVT 85 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~ 85 (131)
+..+ +|+.|+++++ +++.+-++.| ..+..++.|.+..+ +++.+.. .+..+..|++|++.++..-.-.|..+..+.
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aF-e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAF-EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhh-cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 4456 8889999874 6777765544 77888999998887 6766653 356788999999988643333466678888
Q ss_pred CcCeEeecCCc
Q 045942 86 TLKSLAIAECP 96 (131)
Q Consensus 86 ~L~~L~i~~~~ 96 (131)
+|.+|.+..+|
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 99999887554
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.42 E-value=0.0016 Score=49.16 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=59.7
Q ss_pred ccceEeecCcCCCcccchhhhccCCC-CcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeE
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTD-TLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSL 90 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~-~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L 90 (131)
.++.|.+.+ ..+..+|... ..+. +|+.|++++. .+..+|..++.++.|+.|++.+| .+..+|.....++.|+.|
T Consensus 117 ~l~~L~l~~-n~i~~i~~~~--~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDN-NNITDIPPLI--GLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCC-cccccCcccc--ccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 567777755 3577777766 5553 8888988877 77888767888899999998885 577777766566788888
Q ss_pred eecCCc
Q 045942 91 AIAECP 96 (131)
Q Consensus 91 ~i~~~~ 96 (131)
++.++.
T Consensus 192 ~ls~N~ 197 (394)
T COG4886 192 DLSGNK 197 (394)
T ss_pred eccCCc
Confidence 877654
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00088 Score=46.55 Aligned_cols=85 Identities=16% Similarity=0.288 Sum_probs=54.8
Q ss_pred ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCC-CCCC-CcccccccccccccccCcCC-CCCCCCCCc
Q 045942 12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALP-GSLK-DLEALETLVIARCPKLSSLP-EDMHHVTTL 87 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~-~l~sL~~L~l~~c~~l~~lp-~~~~~l~~L 87 (131)
.++.++-+++. +...- +.+ ..+++++.|.+.+|..+...- +.++ -.++|+.|+|+.|+.+++-. .++..+++|
T Consensus 102 ~IeaVDAsds~-I~~eGle~L--~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHL--RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCch-HHHHHHHHH--hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 55666655542 21111 333 567888888998887654332 1222 35899999999999887643 235677888
Q ss_pred CeEeecCCchhh
Q 045942 88 KSLAIAECPALS 99 (131)
Q Consensus 88 ~~L~i~~~~~l~ 99 (131)
+.|.+.+.+.+.
T Consensus 179 r~L~l~~l~~v~ 190 (221)
T KOG3864|consen 179 RRLHLYDLPYVA 190 (221)
T ss_pred HHHHhcCchhhh
Confidence 888888877543
No 42
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.00035 Score=51.02 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=57.9
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCC--CCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPE--DMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~--~~~~l~~L~~ 89 (131)
+.+.|+.++| .+..+.-. ..++.|+.|.++-+ ++.++ ..+..++.|++|+++.+ .+.++-+ .+.++++|+.
T Consensus 20 ~vkKLNcwg~-~L~DIsic---~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISIC---EKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCC-CccHHHHH---HhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 5677888887 46666544 47899999999876 67766 34778899999999864 3555532 5688899999
Q ss_pred EeecCCc
Q 045942 90 LAIAECP 96 (131)
Q Consensus 90 L~i~~~~ 96 (131)
|++..+|
T Consensus 93 LWL~ENP 99 (388)
T KOG2123|consen 93 LWLDENP 99 (388)
T ss_pred HhhccCC
Confidence 9998777
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.99 E-value=0.0013 Score=53.68 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=56.3
Q ss_pred ccceEeecCcCCC-cccchhhhccCCCCcCEEeecCCCCcc-cCCCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942 12 HLRRVVIGEITQF-LELPQWLLQCCTDTLQSLIIVDCPNFM-ALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l-~~lp~~~~~~~l~~L~~L~l~~~~~l~-~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~ 89 (131)
+|++|+|++-..+ ..+|..+. ..||+|++|.+.+-.... .+-.--.++++|..|+|+++ ++..+ .++.++.+|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig-~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIG-TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHh-hhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 7899999874432 23343331 468999999998752111 11122457899999999996 46666 67888999999
Q ss_pred EeecCCc
Q 045942 90 LAIAECP 96 (131)
Q Consensus 90 L~i~~~~ 96 (131)
|.+.+..
T Consensus 200 L~mrnLe 206 (699)
T KOG3665|consen 200 LSMRNLE 206 (699)
T ss_pred HhccCCC
Confidence 9887654
No 44
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.005 Score=27.23 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=3.8
Q ss_pred cceEeecCc
Q 045942 13 LRRVVIGEI 21 (131)
Q Consensus 13 L~~L~i~~c 21 (131)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444444
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.65 E-value=0.0015 Score=48.33 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=21.0
Q ss_pred CCCcccccccccccccccCcCC--CCCCCCCCcCeEeecCCc
Q 045942 57 LKDLEALETLVIARCPKLSSLP--EDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 57 l~~l~sL~~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~~~ 96 (131)
++.+-+|..|++.++ +++.+- .++++++-|+.+.+.++|
T Consensus 370 L~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 344555666666553 233332 345666666666666665
No 46
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.64 E-value=0.009 Score=24.74 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=6.1
Q ss_pred CcCEEeecCCCCcccC
Q 045942 38 TLQSLIIVDCPNFMAL 53 (131)
Q Consensus 38 ~L~~L~l~~~~~l~~l 53 (131)
+|+.|++++|. +..+
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 45555555552 4443
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.57 E-value=0.019 Score=40.20 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=46.0
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC--CCCCCcccccccccccccccCcCCC----C
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP--GSLKDLEALETLVIARCPKLSSLPE----D 80 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp--~~l~~l~sL~~L~l~~c~~l~~lp~----~ 80 (131)
+..+ .|.+|.+.+ +.+..+-+.+. ..+++|+.|.+.++ ++..+. +.+..++.|++|.+.++| ...... -
T Consensus 60 lp~l~rL~tLll~n-NrIt~I~p~L~-~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yv 135 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNN-NRITRIDPDLD-TFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYV 135 (233)
T ss_pred CCCccccceEEecC-Ccceeeccchh-hhccccceEEecCc-chhhhhhcchhccCCccceeeecCCc-hhcccCceeEE
Confidence 3444 666666654 34555554441 34566777777665 444443 235556667777666654 222221 1
Q ss_pred CCCCCCcCeEeecCCc
Q 045942 81 MHHVTTLKSLAIAECP 96 (131)
Q Consensus 81 ~~~l~~L~~L~i~~~~ 96 (131)
+..+++|+.|++.+..
T Consensus 136 l~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEecCcceEeehhhhh
Confidence 3346677777776554
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.41 E-value=0.0016 Score=43.03 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=60.4
Q ss_pred cceEeecCcCCCcccchh---hhccCCCCcCEEeecCCCCcccCCCCCCC-cccccccccccccccCcCCCCCCCCCCcC
Q 045942 13 LRRVVIGEITQFLELPQW---LLQCCTDTLQSLIIVDCPNFMALPGSLKD-LEALETLVIARCPKLSSLPEDMHHVTTLK 88 (131)
Q Consensus 13 L~~L~i~~c~~l~~lp~~---~~~~~l~~L~~L~l~~~~~l~~lp~~l~~-l~sL~~L~l~~c~~l~~lp~~~~~l~~L~ 88 (131)
+..+++++|+ +..++.. + .....|+..+++++ .++.+|+.+.. ++.++++++.+ +.+..+|.++..++.|+
T Consensus 29 ~h~ldLssc~-lm~i~davy~l--~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYML--SKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALR 103 (177)
T ss_pred hhhcccccch-hhHHHHHHHHH--hCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence 4456777775 3344432 3 34567888899988 78889876543 56899999987 57899999999999999
Q ss_pred eEeecCCch
Q 045942 89 SLAIAECPA 97 (131)
Q Consensus 89 ~L~i~~~~~ 97 (131)
.|+++.++-
T Consensus 104 ~lNl~~N~l 112 (177)
T KOG4579|consen 104 SLNLRFNPL 112 (177)
T ss_pred hcccccCcc
Confidence 999998874
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.92 E-value=0.006 Score=45.31 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=50.9
Q ss_pred CCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEeecCCchhhhhcCCCCCCCC-Cccc
Q 045942 36 TDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDW-PKIA 114 (131)
Q Consensus 36 l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~-~~i~ 114 (131)
...|++++++++ .+..+.+.+.-+|.++.|+++.+ .+..+.. ++.+++|+.|+++++..-. + ..| .++.
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~--~-----~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAE--C-----VGWHLKLG 352 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHh--h-----hhhHhhhc
Confidence 346777888877 67777777777788888888774 3444433 6777888888887765222 0 113 3455
Q ss_pred CCCeeEecCcccC
Q 045942 115 HIPEILLDDKMIK 127 (131)
Q Consensus 115 ~l~~l~~~~~~~~ 127 (131)
+|+.+.+.+|.+.
T Consensus 353 NIKtL~La~N~iE 365 (490)
T KOG1259|consen 353 NIKTLKLAQNKIE 365 (490)
T ss_pred CEeeeehhhhhHh
Confidence 5555555555443
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.021 Score=44.14 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=18.0
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDC 47 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~ 47 (131)
+|+.|.++.|.....=-.+++ ..+|+|+.|++..+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~-~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWIL-LTFPSLEVLYLEAN 232 (505)
T ss_pred hhheEEeccCCCCHHHHHHHH-HhCCcHHHhhhhcc
Confidence 788888888853211001111 34455555555554
No 51
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=0.0039 Score=43.41 Aligned_cols=40 Identities=28% Similarity=0.664 Sum_probs=22.1
Q ss_pred CCCcccccccccccccccCc-----CCCCCCCCCCcCeEeecCCchhh
Q 045942 57 LKDLEALETLVIARCPKLSS-----LPEDMHHVTTLKSLAIAECPALS 99 (131)
Q Consensus 57 l~~l~sL~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~i~~~~~l~ 99 (131)
+.++++++.|.+.+|..+.. +.. -.++|+.|++++|+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRIT 165 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeec
Confidence 44556666666666654332 211 23466677777776655
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.91 E-value=0.046 Score=41.88 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=42.5
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
++.+ +|+.|++.+. .++.+...+ ..+++|+.|+++++ .+..+ .++..++.|+.|++.+++ +..+. ++..++.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l--~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLL--SSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGNL-ISDIS-GLESLKS 163 (414)
T ss_pred cccccceeeeecccc-chhhcccch--hhhhcchheecccc-ccccc-cchhhccchhhheeccCc-chhcc-CCccchh
Confidence 4445 6666666553 455554324 45667777777766 55555 245555566666666542 33332 2222444
Q ss_pred cCeEeecCC
Q 045942 87 LKSLAIAEC 95 (131)
Q Consensus 87 L~~L~i~~~ 95 (131)
|+.+++.++
T Consensus 164 L~~l~l~~n 172 (414)
T KOG0531|consen 164 LKLLDLSYN 172 (414)
T ss_pred hhcccCCcc
Confidence 444444443
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.038 Score=42.71 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=22.1
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCP 48 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~ 48 (131)
+|+.|.++.+ ++....+......++.|+.|.++.|.
T Consensus 173 ~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 173 SLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCG 208 (505)
T ss_pred cchhcccccc-cccCCccccchhhhhhhheEEeccCC
Confidence 7888888764 34332221111466888888888883
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.97 E-value=0.2 Score=35.18 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=50.6
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCC-cccccccccccccccCcCCC--CCCCCCCcC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKD-LEALETLVIARCPKLSSLPE--DMHHVTTLK 88 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~-l~sL~~L~l~~c~~l~~lp~--~~~~l~~L~ 88 (131)
+...++++++ .+..++ .+ ..++.|++|.+.++ .+.++-+.+.. ++.|+.|.+.++ .+..+.+ .+..+++|+
T Consensus 43 ~~d~iDLtdN-dl~~l~-~l--p~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLD-NL--PHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceeccccc-chhhcc-cC--CCccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccc
Confidence 3445555553 233332 23 46788889988877 77777655554 567888888774 4544432 345667888
Q ss_pred eEeecCCch
Q 045942 89 SLAIAECPA 97 (131)
Q Consensus 89 ~L~i~~~~~ 97 (131)
+|.+-++|.
T Consensus 117 ~Ltll~Npv 125 (233)
T KOG1644|consen 117 YLTLLGNPV 125 (233)
T ss_pred eeeecCCch
Confidence 888877774
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.032 Score=41.47 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=43.7
Q ss_pred cCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCC---CCCCCCCcCeEeecCCc
Q 045942 34 CCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPE---DMHHVTTLKSLAIAECP 96 (131)
Q Consensus 34 ~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~---~~~~l~~L~~L~i~~~~ 96 (131)
...|+|..|++++|..++.- -..+..++.|++|.++.|..+. |. .+...++|.+|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 45688889999988655431 1345678999999999997542 33 34566789999998874
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.83 E-value=0.051 Score=41.64 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCC-CCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPED-MHHVT 85 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~ 85 (131)
+..+ +|++|++++. .++.+. ++ ..++.|+.|++.++ .+..+. ++..+++|+.+++.++. +..+... +..+.
T Consensus 114 l~~~~~L~~L~ls~N-~I~~i~-~l--~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~ 186 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFN-KITKLE-GL--STLTLLKELNLSGN-LISDIS-GLESLKSLKLLDLSYNR-IVDIENDELSELI 186 (414)
T ss_pred hhhhhcchheecccc-cccccc-ch--hhccchhhheeccC-cchhcc-CCccchhhhcccCCcch-hhhhhhhhhhhcc
Confidence 4456 8999999874 677764 34 56778999999988 566664 46668888888888764 3344332 35556
Q ss_pred CcCeEeecCCc
Q 045942 86 TLKSLAIAECP 96 (131)
Q Consensus 86 ~L~~L~i~~~~ 96 (131)
+++.+++.++.
T Consensus 187 ~l~~l~l~~n~ 197 (414)
T KOG0531|consen 187 SLEELDLGGNS 197 (414)
T ss_pred chHHHhccCCc
Confidence 77777766554
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.23 E-value=0.091 Score=37.87 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=33.1
Q ss_pred cCCCCcCEEeecCCC--CcccCCCCCCCcccccccccccccccCcCC--CCCCCCCCcCeEeecCCch
Q 045942 34 CCTDTLQSLIIVDCP--NFMALPGSLKDLEALETLVIARCPKLSSLP--EDMHHVTTLKSLAIAECPA 97 (131)
Q Consensus 34 ~~l~~L~~L~l~~~~--~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~~~~ 97 (131)
..+++|+.|.++.+. -...++.-....++|+++.++.+. ++.+- ..+..+.+|..|++.+|+.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCc
Confidence 356677777777652 122232223345777777776642 33211 1234445566777777653
No 58
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.95 E-value=0.17 Score=22.88 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=9.8
Q ss_pred CCcCEEeecCCCCcccCCC
Q 045942 37 DTLQSLIIVDCPNFMALPG 55 (131)
Q Consensus 37 ~~L~~L~l~~~~~l~~lp~ 55 (131)
++|+.|+++++ .+..+|.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 45555665555 4555553
No 59
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.95 E-value=0.17 Score=22.88 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=9.8
Q ss_pred CCcCEEeecCCCCcccCCC
Q 045942 37 DTLQSLIIVDCPNFMALPG 55 (131)
Q Consensus 37 ~~L~~L~l~~~~~l~~lp~ 55 (131)
++|+.|+++++ .+..+|.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 45555665555 4555553
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.69 E-value=0.029 Score=46.22 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=15.2
Q ss_pred cCCCCcCEEeecCCCCcccCCCCCCCccccccccccc
Q 045942 34 CCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR 70 (131)
Q Consensus 34 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~ 70 (131)
+-++.|+.|+++++ ++..+ ..+..++.|++|+|++
T Consensus 184 qll~ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 184 QLLPALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHHHhhhhccchh-hhhhh-HHHHhccccccccccc
Confidence 33444555555544 22222 1344444455555543
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.19 E-value=0.28 Score=35.44 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=50.7
Q ss_pred CCCC-ccceEeecCc--CCCcccchhhhccCCCCcCEEeecCCCCcc---cCCCCCCCcccccccccccccccCcCCC--
Q 045942 8 NTRP-HLRRVVIGEI--TQFLELPQWLLQCCTDTLQSLIIVDCPNFM---ALPGSLKDLEALETLVIARCPKLSSLPE-- 79 (131)
Q Consensus 8 i~~l-~L~~L~i~~c--~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~---~lp~~l~~l~sL~~L~l~~c~~l~~lp~-- 79 (131)
+..+ +|+.|.+++. +-...++.-+ ...|+|++|.++++ +++ .+ ..+..+.+|..|++.+|+-.. +-+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~--e~~P~l~~l~ls~N-ki~~lstl-~pl~~l~nL~~Ldl~n~~~~~-l~dyr 135 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLA--EKAPNLKVLNLSGN-KIKDLSTL-RPLKELENLKSLDLFNCSVTN-LDDYR 135 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehh--hhCCceeEEeecCC-cccccccc-chhhhhcchhhhhcccCCccc-cccHH
Confidence 3445 8888988775 2223333333 45699999999988 343 33 246667788889888886433 211
Q ss_pred --CCCCCCCcCeEeecCC
Q 045942 80 --DMHHVTTLKSLAIAEC 95 (131)
Q Consensus 80 --~~~~l~~L~~L~i~~~ 95 (131)
.+.-+++|+.|+-.++
T Consensus 136 e~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 136 EKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHHHhhhhcccccccc
Confidence 1233567777765443
No 62
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.15 E-value=0.017 Score=47.48 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=19.4
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP 54 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp 54 (131)
.|+.|+++.+ ++... ..+ ..++.|++|+|+++ .++.+|
T Consensus 188 ale~LnLshN-k~~~v-~~L--r~l~~LkhLDlsyN-~L~~vp 225 (1096)
T KOG1859|consen 188 ALESLNLSHN-KFTKV-DNL--RRLPKLKHLDLSYN-CLRHVP 225 (1096)
T ss_pred Hhhhhccchh-hhhhh-HHH--Hhcccccccccccc-hhcccc
Confidence 4555555553 23222 233 45566666666655 455554
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.22 Score=37.23 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=43.1
Q ss_pred ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCC---CCCCCccccccccccccc
Q 045942 12 HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALP---GSLKDLEALETLVIARCP 72 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp---~~l~~l~sL~~L~l~~c~ 72 (131)
+|..|++++|..++.= -..+ .+++.|++|.++.|..+ .| -.++.+|+|.+|++.+|-
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~--~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEF--FKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ceeeeccccccccCchHHHHH--HhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 7888999988766531 1334 58899999999999755 23 247789999999998873
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.97 E-value=3.8 Score=25.41 Aligned_cols=82 Identities=15% Similarity=0.289 Sum_probs=45.2
Q ss_pred CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MH 82 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~ 82 (131)
..+... +|+.+.+.+ .+..++...| ...++|+.+.+.+ .+..++. .+.+.++|+.+.+.+ .+..++.. +.
T Consensus 6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F-~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN--TIKKIGENAF-SNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp TTTTT-TT--EEEETS--T--EE-TTTT-TT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred HHHhCCCCCCEEEECC--CeeEeChhhc-ccccccccccccc--cccccceeeeecccccccccccc--ccccccccccc
Confidence 345556 788888864 4667776554 6667899998875 3666664 355666888888854 45555554 45
Q ss_pred CCCCcCeEeecC
Q 045942 83 HVTTLKSLAIAE 94 (131)
Q Consensus 83 ~l~~L~~L~i~~ 94 (131)
..++|+.+.+..
T Consensus 79 ~~~~l~~i~~~~ 90 (129)
T PF13306_consen 79 NCTNLKNIDIPS 90 (129)
T ss_dssp T-TTECEEEETT
T ss_pred ccccccccccCc
Confidence 577888888853
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.54 E-value=0.038 Score=40.73 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=51.2
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC--CCCCCcccccccccccccccCcCCCC-----CCCC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP--GSLKDLEALETLVIARCPKLSSLPED-----MHHV 84 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp--~~l~~l~sL~~L~l~~c~~l~~lp~~-----~~~l 84 (131)
.|++|.++- +++.++-+ + ...+.|+.|++..+ .+.++- .-+.++++|+.|+|..+|-.+.-+.. +.-|
T Consensus 42 ~lEVLsLSv-NkIssL~p-l--~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 42 LLEVLSLSV-NKISSLAP-L--QRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred cceeEEeec-cccccchh-H--HHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 688888865 46666643 3 56788999988766 455554 34678999999999988866554432 2335
Q ss_pred CCcCeEe
Q 045942 85 TTLKSLA 91 (131)
Q Consensus 85 ~~L~~L~ 91 (131)
++|+.|+
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 6777665
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.32 E-value=0.76 Score=35.66 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=25.4
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCc
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNF 50 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l 50 (131)
.|+.|..++|..+...+-+.+.++-.+|+.|.+..|..+
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence 677777777776655553322245677888888887644
No 67
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.30 E-value=1 Score=20.33 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=7.3
Q ss_pred CCcCEEeecCCCCc
Q 045942 37 DTLQSLIIVDCPNF 50 (131)
Q Consensus 37 ~~L~~L~l~~~~~l 50 (131)
++|+.|++++|+.+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 34555555555443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=81.48 E-value=6.1 Score=24.46 Aligned_cols=81 Identities=11% Similarity=0.248 Sum_probs=45.4
Q ss_pred CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MH 82 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~ 82 (131)
..+.+. +|+.+.+.+ .+..++...+ ...++|+.+.+.+ .+..++. .+..++.|+.+.+.. .+..++.. +.
T Consensus 29 ~~F~~~~~l~~i~~~~--~~~~i~~~~F-~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~ 101 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPN--NLTSIGDNAF-SNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFS 101 (129)
T ss_dssp TTTTT-TT-SEEEESS--TTSCE-TTTT-TT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTT
T ss_pred hhcccccccccccccc--cccccceeee-ecccccccccccc--cccccccccccccccccccccCc--cccEEchhhhc
Confidence 345666 889998865 4777876554 6666899999965 4555654 355688898888854 35556554 44
Q ss_pred CCCCcCeEeecC
Q 045942 83 HVTTLKSLAIAE 94 (131)
Q Consensus 83 ~l~~L~~L~i~~ 94 (131)
+. +|+.+.+.+
T Consensus 102 ~~-~l~~i~~~~ 112 (129)
T PF13306_consen 102 NC-NLKEINIPS 112 (129)
T ss_dssp T--T--EEE-TT
T ss_pred CC-CceEEEECC
Confidence 44 777777653
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=80.98 E-value=1.3 Score=34.41 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=10.3
Q ss_pred ccceEeecCcCCCc
Q 045942 12 HLRRVVIGEITQFL 25 (131)
Q Consensus 12 ~L~~L~i~~c~~l~ 25 (131)
+|+.|.+.+|..+.
T Consensus 321 ~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 321 NLQVLELSGCQQFS 334 (483)
T ss_pred ceEEEeccccchhh
Confidence 78888888877544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=79.34 E-value=0.48 Score=36.22 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=8.1
Q ss_pred CCCcCeEeecCCchh
Q 045942 84 VTTLKSLAIAECPAL 98 (131)
Q Consensus 84 l~~L~~L~i~~~~~l 98 (131)
.++|++|++.+|..+
T Consensus 294 ~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGL 308 (482)
T ss_pred cCcccEEeeecCccc
Confidence 344566666555543
No 71
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.72 E-value=1.5 Score=20.23 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=10.1
Q ss_pred CcCEEeecCCCCcccCCC
Q 045942 38 TLQSLIIVDCPNFMALPG 55 (131)
Q Consensus 38 ~L~~L~l~~~~~l~~lp~ 55 (131)
+|+.|.++++ ++.++|+
T Consensus 3 ~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNN-QLTSLPE 19 (26)
T ss_pred ccceeecCCC-ccccCcc
Confidence 4666666665 5666654
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=78.32 E-value=0.73 Score=34.88 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=43.8
Q ss_pred ccceEeecCcCCCcccch----hhhccCCCCcCEEeecCCCCcc-----cCCCCCCCcccccccccccccccC----cCC
Q 045942 12 HLRRVVIGEITQFLELPQ----WLLQCCTDTLQSLIIVDCPNFM-----ALPGSLKDLEALETLVIARCPKLS----SLP 78 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~----~~~~~~l~~L~~L~l~~~~~l~-----~lp~~l~~l~sL~~L~l~~c~~l~----~lp 78 (131)
+|+++...++ .++.-+. ..| +..+.|+.+.+..+. +. .+-+.+..+++|+.|+++++..-. .+.
T Consensus 158 ~Lrv~i~~rN-rlen~ga~~~A~~~-~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 158 KLRVFICGRN-RLENGGATALAEAF-QSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred ceEEEEeecc-ccccccHHHHHHHH-HhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 7777776553 4544431 112 444677777766541 21 111234567777777777653211 222
Q ss_pred CCCCCCCCcCeEeecCCc
Q 045942 79 EDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 79 ~~~~~l~~L~~L~i~~~~ 96 (131)
..+..++.|++|++.+|-
T Consensus 235 kaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHhcccchheeecccccc
Confidence 334455667777777765
No 73
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.53 E-value=1.7 Score=32.67 Aligned_cols=14 Identities=14% Similarity=-0.076 Sum_probs=10.3
Q ss_pred cCCCCcCEEeecCC
Q 045942 34 CCTDTLQSLIIVDC 47 (131)
Q Consensus 34 ~~l~~L~~L~l~~~ 47 (131)
.++|.|++|.++.+
T Consensus 94 e~lP~l~~LNls~N 107 (418)
T KOG2982|consen 94 EQLPALTTLNLSCN 107 (418)
T ss_pred hcCccceEeeccCC
Confidence 56778888887755
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=75.19 E-value=0.4 Score=36.63 Aligned_cols=86 Identities=17% Similarity=0.320 Sum_probs=51.6
Q ss_pred ccceEeecCcCCCcc--cchhhhccCCCCcCEEeecCC-CCcccCC----CCCCCcccccccccccccccCcCCC-CC-C
Q 045942 12 HLRRVVIGEITQFLE--LPQWLLQCCTDTLQSLIIVDC-PNFMALP----GSLKDLEALETLVIARCPKLSSLPE-DM-H 82 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~--lp~~~~~~~l~~L~~L~l~~~-~~l~~lp----~~l~~l~sL~~L~l~~c~~l~~lp~-~~-~ 82 (131)
.|+.|.+.+|..+.. +-... ...+.|+.|++++| ......+ .....++.|+.|++..|..+...-- .+ .
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred hhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 677777777776665 22333 56788999988873 2222222 1223457788888887765432211 11 1
Q ss_pred CCCCcCeEeecCCchhh
Q 045942 83 HVTTLKSLAIAECPALS 99 (131)
Q Consensus 83 ~l~~L~~L~i~~~~~l~ 99 (131)
..++|++|.+.+|..+.
T Consensus 267 ~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLT 283 (482)
T ss_pred hCCCcceEccCCCCccc
Confidence 25688898888888644
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=65.29 E-value=5.2 Score=17.36 Aligned_cols=11 Identities=18% Similarity=0.287 Sum_probs=5.4
Q ss_pred CCcCEEeecCC
Q 045942 37 DTLQSLIIVDC 47 (131)
Q Consensus 37 ~~L~~L~l~~~ 47 (131)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 45666666665
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=47.88 E-value=17 Score=16.57 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=6.4
Q ss_pred CCcCEEeecCC
Q 045942 37 DTLQSLIIVDC 47 (131)
Q Consensus 37 ~~L~~L~l~~~ 47 (131)
++|+.|+++.+
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00365 2 TNLEELDLSQN 12 (26)
T ss_pred CccCEEECCCC
Confidence 45566666655
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=44.83 E-value=0.75 Score=33.30 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=50.7
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
..+.|+++.. .+..+-..+ +.++.|..|+++.. .+..+|+..+.+..+.++...+ ++....|...+..+.++.++
T Consensus 43 r~tvld~~s~-r~vn~~~n~--s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 43 RVTVLDLSSN-RLVNLGKNF--SILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred eeeeehhhhh-HHHhhccch--HHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhh
Confidence 4444555442 222333333 34556667777754 5677787777777777777755 45778888888788888777
Q ss_pred ecCCc
Q 045942 92 IAECP 96 (131)
Q Consensus 92 i~~~~ 96 (131)
..+.+
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 66655
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=33.77 E-value=32 Score=15.56 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=6.8
Q ss_pred CCcCEEeecCC
Q 045942 37 DTLQSLIIVDC 47 (131)
Q Consensus 37 ~~L~~L~l~~~ 47 (131)
++|+.|+++++
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 35666666665
Done!