Query 045942
Match_columns 131
No_of_seqs 225 out of 1466
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 12:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.4 1E-12 3.6E-17 95.7 8.9 81 12-96 184-264 (328)
2 4fcg_A Uncharacterized protein 99.4 4.1E-12 1.4E-16 92.5 10.0 115 4-126 198-313 (328)
3 3e6j_A Variable lymphocyte rec 99.2 1.6E-10 5.4E-15 80.1 10.8 114 5-127 57-172 (229)
4 3rgz_A Protein brassinosteroid 99.2 4.9E-11 1.7E-15 95.4 6.9 114 4-119 624-765 (768)
5 4b8c_D Glucose-repressible alc 99.1 1.1E-10 3.6E-15 93.3 8.0 113 5-128 217-330 (727)
6 2v9t_B SLIT homolog 2 protein 99.1 7.9E-10 2.7E-14 76.2 11.1 109 8-126 52-164 (220)
7 3m19_A Variable lymphocyte rec 99.1 1.2E-09 4.2E-14 76.3 11.5 85 7-95 54-141 (251)
8 2o6s_A Variable lymphocyte rec 99.1 1.6E-09 5.4E-14 73.6 11.6 111 8-127 48-161 (208)
9 4ezg_A Putative uncharacterize 99.1 1.4E-10 4.7E-15 78.5 6.1 86 7-96 61-147 (197)
10 4g8a_A TOLL-like receptor 4; l 99.1 5.7E-10 1.9E-14 86.2 10.0 113 7-127 71-186 (635)
11 2v70_A SLIT-2, SLIT homolog 2 99.1 6.6E-10 2.3E-14 76.6 9.3 110 8-127 53-166 (220)
12 1ozn_A Reticulon 4 receptor; N 99.1 1.6E-09 5.5E-14 76.9 11.2 84 8-95 52-139 (285)
13 2o6q_A Variable lymphocyte rec 99.0 3.8E-09 1.3E-13 74.5 11.9 85 7-95 56-143 (270)
14 1ozn_A Reticulon 4 receptor; N 99.0 2.7E-09 9.4E-14 75.6 11.0 87 5-95 73-163 (285)
15 4ezg_A Putative uncharacterize 99.0 6.8E-10 2.3E-14 75.1 7.4 111 7-127 83-194 (197)
16 3rgz_A Protein brassinosteroid 99.0 4.6E-10 1.6E-14 89.8 7.5 113 7-126 437-550 (768)
17 2xwt_C Thyrotropin receptor; s 99.0 8.7E-10 3E-14 76.4 7.7 86 7-95 50-140 (239)
18 1ogq_A PGIP-2, polygalacturona 99.0 1.4E-10 4.9E-15 83.7 3.8 91 4-96 68-160 (313)
19 1w8a_A SLIT protein; signaling 99.0 3.8E-09 1.3E-13 71.2 10.4 106 12-127 30-139 (192)
20 2ell_A Acidic leucine-rich nuc 99.0 3.3E-10 1.1E-14 74.6 4.9 85 6-96 43-131 (168)
21 3zyj_A Leucine-rich repeat-con 99.0 2.7E-09 9.1E-14 80.2 10.3 61 8-70 132-194 (440)
22 3v47_A TOLL-like receptor 5B a 99.0 2.6E-09 9E-14 80.0 10.2 115 5-128 292-409 (455)
23 3rfs_A Internalin B, repeat mo 99.0 6.1E-09 2.1E-13 73.6 11.6 86 34-126 130-217 (272)
24 3m19_A Variable lymphocyte rec 99.0 1.1E-08 3.8E-13 71.4 12.6 113 6-127 77-192 (251)
25 4b8c_D Glucose-repressible alc 99.0 4.5E-10 1.6E-14 89.7 6.1 88 4-96 239-327 (727)
26 4eco_A Uncharacterized protein 99.0 4.2E-10 1.4E-14 88.4 5.7 69 25-96 196-284 (636)
27 2o6q_A Variable lymphocyte rec 99.0 7.6E-09 2.6E-13 73.0 11.6 83 9-95 82-167 (270)
28 2wfh_A SLIT homolog 2 protein 99.0 5.6E-09 1.9E-13 70.6 10.2 106 12-127 32-139 (193)
29 4g8a_A TOLL-like receptor 4; l 99.0 3E-09 1E-13 82.2 9.8 108 12-128 53-162 (635)
30 2z66_A Variable lymphocyte rec 99.0 3.4E-09 1.1E-13 75.8 9.3 85 7-96 121-210 (306)
31 2z80_A TOLL-like receptor 2, v 99.0 1.8E-09 6.1E-14 78.8 7.9 84 7-95 71-159 (353)
32 1ogq_A PGIP-2, polygalacturona 99.0 4.1E-10 1.4E-14 81.3 4.5 92 3-96 92-185 (313)
33 2z63_A TOLL-like receptor 4, v 99.0 3.2E-09 1.1E-13 81.5 9.5 114 7-127 416-531 (570)
34 3zyi_A Leucine-rich repeat-con 99.0 3E-09 1E-13 80.1 9.2 83 8-94 143-227 (452)
35 3v47_A TOLL-like receptor 5B a 99.0 3.2E-09 1.1E-13 79.5 9.2 18 110-127 150-167 (455)
36 2id5_A Lingo-1, leucine rich r 99.0 5.6E-09 1.9E-13 78.9 10.6 85 7-95 51-138 (477)
37 3e6j_A Variable lymphocyte rec 99.0 5.3E-09 1.8E-13 72.3 9.4 87 6-96 82-170 (229)
38 2o6r_A Variable lymphocyte rec 98.9 1.2E-08 4E-13 67.7 10.7 107 12-127 29-137 (177)
39 3j0a_A TOLL-like receptor 5; m 98.9 5.8E-09 2E-13 84.2 10.9 116 5-127 41-161 (844)
40 3vq2_A TLR4, TOLL-like recepto 98.9 2.1E-09 7.2E-14 83.3 7.9 86 8-95 420-507 (606)
41 1p9a_G Platelet glycoprotein I 98.9 1E-08 3.4E-13 73.4 10.8 79 12-95 78-158 (290)
42 1p9a_G Platelet glycoprotein I 98.9 5.9E-09 2E-13 74.6 9.6 83 8-96 51-135 (290)
43 2v9t_B SLIT homolog 2 protein 98.9 7.1E-09 2.4E-13 71.4 9.5 89 4-96 72-163 (220)
44 2o6s_A Variable lymphocyte rec 98.9 1.4E-08 4.6E-13 68.9 10.7 108 12-128 29-138 (208)
45 3rfs_A Internalin B, repeat mo 98.9 1.9E-08 6.5E-13 71.0 11.7 108 12-128 86-195 (272)
46 3zyi_A Leucine-rich repeat-con 98.9 9.3E-09 3.2E-13 77.4 10.6 86 6-96 93-182 (452)
47 2xwt_C Thyrotropin receptor; s 98.9 2E-09 6.8E-14 74.6 5.7 86 7-95 75-166 (239)
48 2r9u_A Variable lymphocyte rec 98.9 1.5E-08 5E-13 67.5 9.7 80 12-96 34-116 (174)
49 2ell_A Acidic leucine-rich nuc 98.9 2E-09 6.8E-14 70.8 5.3 108 12-128 25-134 (168)
50 3zyj_A Leucine-rich repeat-con 98.9 1.6E-08 5.5E-13 75.9 10.8 87 6-96 82-171 (440)
51 3o6n_A APL1; leucine-rich repe 98.9 2.1E-08 7.2E-13 74.0 11.2 85 7-95 88-175 (390)
52 3t6q_A CD180 antigen; protein- 98.9 1.4E-08 4.9E-13 78.6 10.7 85 7-95 52-139 (606)
53 2z80_A TOLL-like receptor 2, v 98.9 4.1E-09 1.4E-13 76.9 7.2 85 8-95 96-184 (353)
54 1dce_A Protein (RAB geranylger 98.9 3.2E-09 1.1E-13 82.7 7.0 76 13-95 443-518 (567)
55 3vq2_A TLR4, TOLL-like recepto 98.9 1.4E-08 4.8E-13 78.7 10.5 112 7-127 51-166 (606)
56 2z81_A CD282 antigen, TOLL-lik 98.9 4.2E-09 1.4E-13 80.6 7.1 86 6-96 44-134 (549)
57 2z66_A Variable lymphocyte rec 98.9 9.5E-09 3.2E-13 73.5 8.4 114 5-127 143-261 (306)
58 2je0_A Acidic leucine-rich nuc 98.9 4E-09 1.4E-13 68.0 5.9 108 12-128 18-127 (149)
59 2o6r_A Variable lymphocyte rec 98.9 1.9E-08 6.4E-13 66.7 9.3 87 6-96 46-135 (177)
60 2v70_A SLIT-2, SLIT homolog 2 98.9 2.4E-08 8.1E-13 68.7 9.9 88 5-96 74-164 (220)
61 3oja_B Anopheles plasmodium-re 98.9 2.4E-08 8.1E-13 77.8 11.0 86 7-95 94-181 (597)
62 1w8a_A SLIT protein; signaling 98.9 1.2E-08 4.2E-13 68.7 8.1 85 8-96 50-137 (192)
63 2xot_A Amphoterin-induced prot 98.8 1.7E-08 5.8E-13 74.1 9.5 80 12-95 65-146 (361)
64 2z62_A TOLL-like receptor 4, v 98.8 2.8E-08 9.6E-13 70.1 10.2 55 12-70 29-85 (276)
65 1dce_A Protein (RAB geranylger 98.8 4.6E-09 1.6E-13 81.8 6.6 84 8-97 459-545 (567)
66 2ifg_A High affinity nerve gro 98.8 1.9E-08 6.5E-13 73.1 9.1 90 3-96 23-114 (347)
67 2z81_A CD282 antigen, TOLL-lik 98.8 8.7E-09 3E-13 78.9 7.7 88 5-96 67-159 (549)
68 4eco_A Uncharacterized protein 98.8 1.3E-09 4.5E-14 85.6 3.1 90 4-96 239-341 (636)
69 2wfh_A SLIT homolog 2 protein 98.8 1.8E-08 6.3E-13 68.0 8.3 89 4-96 46-137 (193)
70 2je0_A Acidic leucine-rich nuc 98.8 2.8E-09 9.4E-14 68.8 4.0 88 3-96 33-124 (149)
71 2id5_A Lingo-1, leucine rich r 98.8 2E-08 6.8E-13 75.9 9.2 84 7-94 195-281 (477)
72 1ziw_A TOLL-like receptor 3; i 98.8 1.4E-08 4.9E-13 79.7 8.7 84 8-96 45-132 (680)
73 4ecn_A Leucine-rich repeat pro 98.8 2E-08 6.7E-13 81.8 9.5 81 12-96 729-817 (876)
74 3t6q_A CD180 antigen; protein- 98.8 4.3E-08 1.5E-12 76.0 10.4 83 7-93 273-358 (606)
75 3o6n_A APL1; leucine-rich repe 98.8 6.7E-08 2.3E-12 71.3 11.1 106 12-127 70-178 (390)
76 4fmz_A Internalin; leucine ric 98.8 2.6E-08 9E-13 72.2 8.6 81 8-96 62-143 (347)
77 3g39_A Variable lymphocyte rec 98.8 6E-08 2.1E-12 64.2 9.6 80 12-96 31-113 (170)
78 3g39_A Variable lymphocyte rec 98.8 7.5E-08 2.6E-12 63.7 9.9 104 12-127 10-115 (170)
79 2xot_A Amphoterin-induced prot 98.8 6.2E-08 2.1E-12 71.1 10.1 81 12-96 40-123 (361)
80 4ecn_A Leucine-rich repeat pro 98.8 5.6E-09 1.9E-13 85.0 4.7 90 4-96 481-584 (876)
81 1a9n_A U2A', U2A'; complex (nu 98.8 1.2E-08 4.2E-13 67.6 5.6 106 12-127 20-126 (176)
82 1h6u_A Internalin H; cell adhe 98.8 3.8E-08 1.3E-12 70.9 8.4 80 8-95 59-139 (308)
83 2z63_A TOLL-like receptor 4, v 98.7 2.3E-08 7.7E-13 76.7 7.6 90 34-128 418-508 (570)
84 1a9n_A U2A', U2A'; complex (nu 98.7 3.8E-09 1.3E-13 70.1 2.7 80 12-97 43-125 (176)
85 1h6u_A Internalin H; cell adhe 98.7 4.6E-08 1.6E-12 70.4 8.6 57 8-70 81-138 (308)
86 2r9u_A Variable lymphocyte rec 98.7 1.1E-07 3.9E-12 63.1 9.9 104 12-127 13-118 (174)
87 3j0a_A TOLL-like receptor 5; m 98.7 8.1E-08 2.8E-12 77.6 10.8 111 12-128 25-137 (844)
88 2z62_A TOLL-like receptor 4, v 98.7 8.9E-08 3E-12 67.5 9.7 114 6-128 46-163 (276)
89 2z7x_B TOLL-like receptor 1, v 98.7 8E-09 2.7E-13 78.7 4.5 78 12-96 22-101 (520)
90 1xku_A Decorin; proteoglycan, 98.7 6.4E-08 2.2E-12 69.9 9.1 77 12-95 53-131 (330)
91 2ft3_A Biglycan; proteoglycan, 98.7 1.2E-07 4.3E-12 68.5 10.5 83 7-96 73-158 (332)
92 2z7x_B TOLL-like receptor 1, v 98.7 5.9E-08 2E-12 74.0 9.1 40 5-47 341-384 (520)
93 4fmz_A Internalin; leucine ric 98.7 6.3E-08 2.1E-12 70.2 8.8 82 8-96 84-166 (347)
94 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 5.1E-08 1.8E-12 75.2 8.6 78 12-96 53-132 (562)
95 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 9.7E-08 3.3E-12 73.6 9.3 114 4-127 369-510 (562)
96 2ft3_A Biglycan; proteoglycan, 98.7 9.9E-08 3.4E-12 69.0 8.7 60 8-71 213-274 (332)
97 1h6t_A Internalin B; cell adhe 98.7 6.4E-08 2.2E-12 69.2 7.5 80 8-95 64-144 (291)
98 3oja_B Anopheles plasmodium-re 98.7 2.3E-07 7.8E-12 72.3 11.0 108 10-127 73-184 (597)
99 1xku_A Decorin; proteoglycan, 98.7 2.2E-07 7.5E-12 67.0 10.2 80 12-96 193-274 (330)
100 1xeu_A Internalin C; cellular 98.7 1.4E-07 4.7E-12 66.6 8.8 75 12-95 64-138 (263)
101 1xeu_A Internalin C; cellular 98.7 1.2E-07 4.1E-12 66.9 8.6 80 8-96 37-117 (263)
102 3o53_A Protein LRIM1, AGAP0063 98.7 2.9E-08 1E-12 71.5 5.5 110 7-127 139-250 (317)
103 4glp_A Monocyte differentiatio 98.7 9.9E-08 3.4E-12 68.5 8.2 83 36-129 223-309 (310)
104 1wwl_A Monocyte differentiatio 98.6 2.3E-08 7.8E-13 72.0 4.6 83 12-96 96-184 (312)
105 1h6t_A Internalin B; cell adhe 98.6 8.5E-08 2.9E-12 68.5 7.4 80 8-95 86-166 (291)
106 1ziw_A TOLL-like receptor 3; i 98.6 3.9E-07 1.3E-11 71.5 10.6 120 5-127 398-549 (680)
107 3o53_A Protein LRIM1, AGAP0063 98.6 7.2E-08 2.5E-12 69.5 5.9 82 10-97 167-249 (317)
108 3bz5_A Internalin-J, INLJ; leu 98.6 5E-07 1.7E-11 68.5 10.4 75 8-93 60-135 (457)
109 2ifg_A High affinity nerve gro 98.6 2.6E-07 8.8E-12 67.1 8.3 104 14-127 11-116 (347)
110 1m9s_A Internalin B; cell inva 98.6 1.9E-07 6.4E-12 73.3 8.0 81 7-95 60-141 (605)
111 1m9s_A Internalin B; cell inva 98.5 2.8E-07 9.6E-12 72.3 8.5 105 7-126 104-209 (605)
112 3oja_A Leucine-rich immune mol 98.5 1E-07 3.4E-12 72.8 5.4 111 7-127 139-250 (487)
113 2ast_B S-phase kinase-associat 98.5 2.6E-08 8.9E-13 71.8 1.8 39 58-96 219-258 (336)
114 3bz5_A Internalin-J, INLJ; leu 98.5 1.3E-06 4.4E-11 66.2 11.0 77 8-95 81-158 (457)
115 3oja_A Leucine-rich immune mol 98.5 1.2E-07 4.1E-12 72.4 5.1 86 6-97 162-249 (487)
116 4ay9_X Follicle-stimulating ho 98.5 2.8E-07 9.4E-12 67.3 6.6 83 12-96 31-115 (350)
117 4ay9_X Follicle-stimulating ho 98.5 4.1E-07 1.4E-11 66.4 7.1 78 12-94 178-255 (350)
118 1o6v_A Internalin A; bacterial 98.4 6.2E-07 2.1E-11 67.7 7.9 57 35-95 285-341 (466)
119 1wwl_A Monocyte differentiatio 98.4 1.6E-07 5.5E-12 67.5 4.4 89 4-96 111-212 (312)
120 2ast_B S-phase kinase-associat 98.4 2.4E-08 8.4E-13 72.0 -0.1 63 8-72 89-153 (336)
121 1ds9_A Outer arm dynein; leuci 98.4 1.9E-10 6.4E-15 77.9 -11.3 59 8-71 44-103 (198)
122 3e4g_A ATP synthase subunit S, 98.4 9.5E-08 3.2E-12 64.1 1.8 88 9-99 59-153 (176)
123 1o6v_A Internalin A; bacterial 98.4 5E-07 1.7E-11 68.2 5.9 80 8-95 64-144 (466)
124 1jl5_A Outer protein YOPM; leu 98.4 4.4E-06 1.5E-10 63.2 10.6 74 12-95 132-205 (454)
125 4glp_A Monocyte differentiatio 98.3 1.5E-06 5.3E-11 62.2 7.0 77 12-96 225-305 (310)
126 1ds9_A Outer arm dynein; leuci 98.2 1.2E-08 4.1E-13 68.9 -6.1 85 7-97 65-152 (198)
127 3g06_A SSPH2 (leucine-rich rep 98.1 1.5E-05 5E-10 62.8 9.2 77 37-127 221-297 (622)
128 3g06_A SSPH2 (leucine-rich rep 98.1 6.3E-06 2.1E-10 64.9 6.7 74 12-96 222-295 (622)
129 1jl5_A Outer protein YOPM; leu 98.1 1.1E-05 3.9E-10 61.0 7.7 76 8-95 149-225 (454)
130 3cvr_A Invasion plasmid antige 98.0 6.5E-06 2.2E-10 64.3 5.5 32 64-96 210-241 (571)
131 3cvr_A Invasion plasmid antige 98.0 6.8E-05 2.3E-09 58.5 10.3 49 12-70 81-129 (571)
132 2ca6_A RAN GTPase-activating p 97.9 3E-07 1E-11 67.7 -3.2 15 113-127 302-316 (386)
133 2ca6_A RAN GTPase-activating p 97.8 1.1E-06 3.8E-11 64.7 -1.7 81 12-96 217-314 (386)
134 3e4g_A ATP synthase subunit S, 97.8 6.9E-06 2.4E-10 55.0 1.3 67 8-76 81-154 (176)
135 3sb4_A Hypothetical leucine ri 97.6 0.0002 6.7E-09 51.6 7.6 77 12-94 227-306 (329)
136 3goz_A Leucine-rich repeat-con 97.5 1.2E-05 4.2E-10 58.7 -0.8 80 12-96 23-120 (362)
137 3ogk_B Coronatine-insensitive 97.4 0.00014 4.8E-09 55.9 4.4 10 12-21 165-174 (592)
138 3rw6_A Nuclear RNA export fact 97.4 8.8E-05 3E-09 52.7 2.8 61 34-97 167-232 (267)
139 2p1m_B Transport inhibitor res 97.4 1.1E-05 3.7E-10 62.1 -2.3 60 36-96 129-195 (594)
140 2p1m_B Transport inhibitor res 97.3 4.8E-05 1.7E-09 58.5 1.1 80 12-96 131-222 (594)
141 3sb4_A Hypothetical leucine ri 97.3 0.00072 2.5E-08 48.6 7.1 81 6-92 244-328 (329)
142 1z7x_W Ribonuclease inhibitor; 97.3 1.9E-05 6.5E-10 59.0 -1.4 80 12-96 29-124 (461)
143 3goz_A Leucine-rich repeat-con 97.1 7.2E-05 2.5E-09 54.6 0.3 77 16-96 3-91 (362)
144 1z7x_W Ribonuclease inhibitor; 97.1 2.4E-05 8.2E-10 58.4 -2.7 36 60-96 369-409 (461)
145 3ogk_B Coronatine-insensitive 97.0 0.00064 2.2E-08 52.2 4.1 14 34-47 217-230 (592)
146 3un9_A NLR family member X1; l 96.6 0.00019 6.4E-09 53.0 -1.3 59 36-96 154-222 (372)
147 3un9_A NLR family member X1; l 96.5 5.9E-05 2E-09 55.8 -4.8 14 83-96 181-194 (372)
148 3rw6_A Nuclear RNA export fact 96.4 0.0017 5.8E-08 46.1 2.5 76 12-92 171-258 (267)
149 2ra8_A Uncharacterized protein 96.3 0.0024 8.3E-08 47.0 2.9 14 83-96 250-263 (362)
150 4fdw_A Leucine rich hypothetic 96.2 0.063 2.2E-06 39.9 10.2 12 8-19 222-234 (401)
151 2ra8_A Uncharacterized protein 95.9 0.00051 1.7E-08 50.7 -2.1 92 35-127 217-320 (362)
152 4fdw_A Leucine rich hypothetic 95.9 0.076 2.6E-06 39.4 9.6 53 12-69 181-234 (401)
153 1io0_A Tropomodulin; LRR prote 95.8 0.0017 6E-08 43.1 0.2 110 12-126 37-163 (185)
154 3rfe_A Platelet glycoprotein I 95.2 0.028 9.6E-07 35.2 4.4 35 37-72 31-66 (130)
155 3rfe_A Platelet glycoprotein I 95.1 0.038 1.3E-06 34.6 4.8 51 42-96 13-66 (130)
156 1io0_A Tropomodulin; LRR prote 94.6 0.0033 1.1E-07 41.7 -1.2 80 12-96 66-162 (185)
157 4gt6_A Cell surface protein; l 93.9 0.3 1E-05 35.7 7.9 37 57-95 330-367 (394)
158 4gt6_A Cell surface protein; l 93.0 0.93 3.2E-05 33.0 9.4 100 12-124 266-367 (394)
159 4h09_A Hypothetical leucine ri 92.7 0.43 1.5E-05 34.5 7.1 30 12-44 241-270 (379)
160 4fs7_A Uncharacterized protein 92.2 0.55 1.9E-05 34.3 7.1 56 34-93 317-374 (394)
161 4fs7_A Uncharacterized protein 90.2 0.41 1.4E-05 35.0 4.7 58 8-70 316-375 (394)
162 4h09_A Hypothetical leucine ri 89.7 2.5 8.6E-05 30.4 8.6 11 35-45 284-294 (379)
163 1pgv_A TMD-1, tropomodulin TMD 81.7 0.36 1.2E-05 32.5 0.5 80 12-95 42-136 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.40 E-value=1e-12 Score=95.69 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=45.4
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
+|++|+++++ .+..+|.++ +.+++|+.|++++| .+..+|..++.+++|++|++++|...+.+|..+..+++|++|+
T Consensus 184 ~L~~L~L~~n-~l~~lp~~l--~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 184 NLQSLRLEWT-GIRSLPASI--ANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp TCCEEEEEEE-CCCCCCGGG--GGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCEEECcCC-CcCcchHhh--cCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 5666666554 344555555 55555666666555 3445555555555555555555555555555555555555555
Q ss_pred ecCCc
Q 045942 92 IAECP 96 (131)
Q Consensus 92 i~~~~ 96 (131)
+.+|.
T Consensus 260 L~~n~ 264 (328)
T 4fcg_A 260 LKDCS 264 (328)
T ss_dssp CTTCT
T ss_pred CCCCC
Confidence 55554
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.36 E-value=4.1e-12 Score=92.54 Aligned_cols=115 Identities=20% Similarity=0.291 Sum_probs=78.3
Q ss_pred CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942 4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH 82 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~ 82 (131)
.|..++.+ +|++|++++| .+..+|..+ +.+++|+.|++++|.....+|..++.+++|+.|++.+|...+.+|..+.
T Consensus 198 lp~~l~~l~~L~~L~L~~N-~l~~l~~~l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 198 LPASIANLQNLKSLKIRNS-PLSALGPAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp CCGGGGGCTTCCEEEEESS-CCCCCCGGG--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred chHhhcCCCCCCEEEccCC-CCCcCchhh--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 34556666 7777777775 455677666 6777788888877777777777777777788888877777777777777
Q ss_pred CCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942 83 HVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMI 126 (131)
Q Consensus 83 ~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 126 (131)
.+++|++|++.+|..+. .....+..+..+..+.+..+.+
T Consensus 275 ~l~~L~~L~L~~n~~~~-----~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLS-----RLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp GCTTCCEEECTTCTTCC-----CCCGGGGGSCTTCEEECCGGGS
T ss_pred cCCCCCEEeCCCCCchh-----hccHHHhhccCceEEeCCHHHH
Confidence 77778888877776543 2223345555566555554443
No 3
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=1.6e-10 Score=80.11 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=72.9
Q ss_pred CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCCCC
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPEDMH 82 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~~~ 82 (131)
+..+..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++ .+..+|..+.
T Consensus 57 ~~~~~~l~~L~~L~L~~N-~l~~i~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 132 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSN-QLGALPVGVF-DSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIE 132 (229)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGG
T ss_pred HHHhhCccCCcEEECCCC-CCCCcChhhc-ccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCcccc
Confidence 3445666 7777777765 4566664432 56777777777776 56666543 466777777777664 4667777777
Q ss_pred CCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 83 HVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 83 ~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
.+++|+.|++.++. +. ......+..+.+++.+.+.++.+.
T Consensus 133 ~l~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 133 RLTHLTHLALDQNQ-LK----SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp GCTTCSEEECCSSC-CC----CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCCCCEEECCCCc-CC----ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77777777777653 11 111233556677777777777654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.16 E-value=4.9e-11 Score=95.42 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=81.0
Q ss_pred CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942 4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH 82 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~ 82 (131)
.|..++.+ +|++|+++++.....+|..+ +.+++|+.|+++++...+.+|..++.+++|+.|++++|...+.+|..+.
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred CchhhhccccccEEECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 35567778 89999999887666888888 8999999999999966668999999999999999999877778898899
Q ss_pred CCCCcCeEeecCCchh---------h------------------hhcCCCCCCCCCcccCCCee
Q 045942 83 HVTTLKSLAIAECPAL---------S------------------ERCKPPTGEDWPKIAHIPEI 119 (131)
Q Consensus 83 ~l~~L~~L~i~~~~~l---------~------------------~~~~~~~~~~~~~i~~l~~l 119 (131)
.+++|++|+++++.-. . ..|....+++|++++|+++.
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 9999999998876421 1 12444566789989888764
No 5
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=1.1e-10 Score=93.30 Aligned_cols=113 Identities=14% Similarity=0.240 Sum_probs=90.5
Q ss_pred CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCC
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHH 83 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~ 83 (131)
+..+..+ +|+.|+++++ .+..+|..+ ..+++|+.|++++| .+..+|..++.+++|+.|++++|. +..+|..+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~--~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANI--FKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS 291 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGG--GGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhh--cCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence 4456677 8999999986 477899888 78999999999998 677999889999999999999864 7799999999
Q ss_pred CCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942 84 VTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 84 l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 128 (131)
+++|++|++.+|. +. .....+..+.++..|.+.++.+..
T Consensus 292 l~~L~~L~L~~N~-l~-----~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 CFQLKYFYFFDNM-VT-----TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GTTCSEEECCSSC-CC-----CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCEEECCCCC-CC-----ccChhhhcCCCccEEeCCCCccCC
Confidence 9999999999874 22 123346778899999999988753
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.13 E-value=7.9e-10 Score=76.17 Aligned_cols=109 Identities=19% Similarity=0.284 Sum_probs=54.9
Q ss_pred CCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcC-CCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSL-PEDMHH 83 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~l-p~~~~~ 83 (131)
+..+ +|++|+++++ .+..+ |..+ ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++. +..+ |..+..
T Consensus 52 ~~~l~~L~~L~Ls~N-~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~ 126 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNN-QISELAPDAF--QGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQD 126 (220)
T ss_dssp STTCTTCCEEECCSS-CCCEECTTTT--TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred hhCCCCCCEEECCCC-cCCCcCHHHh--hCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCC
Confidence 4444 5555555554 23344 3333 55555666666555 45555533 3455566666665543 3333 334555
Q ss_pred CCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942 84 VTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMI 126 (131)
Q Consensus 84 l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 126 (131)
+++|+.|++.++.-- ......+..+.+++.+.+.++.+
T Consensus 127 l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 127 LHNLNLLSLYDNKLQ-----TIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCcCC-----EECHHHHhCCCCCCEEEeCCCCc
Confidence 556666666554311 11122344556666676666654
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.11 E-value=1.2e-09 Score=76.31 Aligned_cols=85 Identities=22% Similarity=0.296 Sum_probs=40.7
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCC-CCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPED-MHH 83 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~ 83 (131)
.+..+ +|++|+++++ .+..++...+ ..+++|+.|+++++ .+..+| ..+..+++|++|+++++ .+..+|.. +..
T Consensus 54 ~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 129 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYN-QLQTLSAGVF-DDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDR 129 (251)
T ss_dssp TTTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred HhcCcccCCEEECCCC-cCCccCHhHh-ccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhcc
Confidence 45555 6666666654 3444443221 45555666665555 344443 22344555555555443 34444433 244
Q ss_pred CCCcCeEeecCC
Q 045942 84 VTTLKSLAIAEC 95 (131)
Q Consensus 84 l~~L~~L~i~~~ 95 (131)
+++|++|++.++
T Consensus 130 l~~L~~L~Ls~N 141 (251)
T 3m19_A 130 LTKLKELRLNTN 141 (251)
T ss_dssp CTTCCEEECCSS
T ss_pred CCcccEEECcCC
Confidence 445555544443
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=1.6e-09 Score=73.63 Aligned_cols=111 Identities=20% Similarity=0.314 Sum_probs=57.8
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHV 84 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l 84 (131)
+..+ +|++|+++++ .+..+|...+ ..+++|++|+++++ .+..+|.. +..+++|++|+++++ .+..+|.. +..+
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 123 (208)
T 2o6s_A 48 FDELTSLTQLYLGGN-KLQSLPNGVF-NKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKL 123 (208)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred hcccccCcEEECCCC-ccCccChhhc-CCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccC
Confidence 3444 5666666553 3445553322 45566666666655 44445432 455666666666554 34445443 4555
Q ss_pred CCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 85 TTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 85 ~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
++|++|++.++.- . ......+..+.+++.+.+.++.+.
T Consensus 124 ~~L~~L~l~~N~l-~----~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 124 TQLKDLRLYQNQL-K----SVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTCCEEECCSSCC-S----CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CcCCEEECCCCcc-c----eeCHHHhccCCCccEEEecCCCee
Confidence 6666666665531 1 111122455666777777766543
No 9
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=1.4e-10 Score=78.53 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=49.9
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT 85 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~ 85 (131)
.+..+ +|++|++++| .+..++ .+ ..+++|+.|++++|.--...|..+..+++|++|++++|..-...|..+..++
T Consensus 61 ~l~~l~~L~~L~l~~n-~~~~~~-~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 136 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNI-HATNYN-PI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136 (197)
T ss_dssp TGGGCTTCSEEEEESC-CCSCCG-GG--TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS
T ss_pred HHhcCCCCCEEEccCC-CCCcch-hh--hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC
Confidence 34455 7777777766 454443 44 5667777777776632222455566666666666666543333444455566
Q ss_pred CcCeEeecCCc
Q 045942 86 TLKSLAIAECP 96 (131)
Q Consensus 86 ~L~~L~i~~~~ 96 (131)
+|++|++.+|.
T Consensus 137 ~L~~L~L~~n~ 147 (197)
T 4ezg_A 137 KVNSIDLSYNG 147 (197)
T ss_dssp SCCEEECCSCT
T ss_pred CCCEEEccCCC
Confidence 66666666554
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.09 E-value=5.7e-10 Score=86.21 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHH 83 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~ 83 (131)
++.++ +|++|++++| .+..+|++.| ..+++|++|++++| .+..+|. .+..+++|++|++.+| .+..+|.. +++
T Consensus 71 ~f~~l~~L~~L~Ls~N-~i~~i~~~~f-~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~ 146 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGH 146 (635)
T ss_dssp TTTTCTTCCEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTT
T ss_pred HHhCCCCCCEEECCCC-cCCCcChhHh-cCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhc
Confidence 45555 6666666554 3555554322 55666666666665 4555553 3455666666666654 34455443 556
Q ss_pred CCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 84 VTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 84 l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
+++|++|++.++.--. ...+..+..+..++.+.+.++.++
T Consensus 147 L~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQS----FKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTCCEEECCSSCCCC----CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CcccCeeccccCcccc----CCCchhhccchhhhhhcccCcccc
Confidence 6666666665543110 011223445566666666666543
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.09 E-value=6.6e-10 Score=76.56 Aligned_cols=110 Identities=9% Similarity=0.210 Sum_probs=66.6
Q ss_pred CCCC-ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcC-CCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSL-PEDMHH 83 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~l-p~~~~~ 83 (131)
+..+ +|++|+++++ .+..++. .+ ..+++|+.|+++++ .+..++. .+..+++|++|+++++. +..+ |..+..
T Consensus 53 ~~~l~~L~~L~L~~N-~i~~i~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 127 (220)
T 2v70_A 53 FKKLPQLRKINFSNN-KITDIEEGAF--EGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIG 127 (220)
T ss_dssp GGGCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTT
T ss_pred hccCCCCCEEECCCC-cCCEECHHHh--CCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCC
Confidence 4455 6777777664 3555654 34 66777777777776 4555553 36667777777777654 4444 455667
Q ss_pred CCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 84 VTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 84 l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
+++|+.|++.++.-- ......+..+.+++.+.+.++.+.
T Consensus 128 l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 128 LSSVRLLSLYDNQIT-----TVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTCSEEECTTSCCC-----CBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCCEEECCCCcCC-----EECHHHhcCCCCCCEEEecCcCCc
Confidence 777777777765421 111233455667777777777653
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.08 E-value=1.6e-09 Score=76.85 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=37.2
Q ss_pred CCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcC-CCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSL-PEDMHH 83 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~l-p~~~~~ 83 (131)
+..+ +|++|+++++ .+..+ |..+ ..+++|+.|+++++..+..+ |..+..+++|++|++.+|. +..+ |..+..
T Consensus 52 ~~~~~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 127 (285)
T 1ozn_A 52 FRACRNLTILWLHSN-VLARIDAAAF--TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRG 127 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred cccCCCCCEEECCCC-ccceeCHhhc--CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhC
Confidence 3444 5555555443 23333 2333 44555555555555334444 2334445555555554443 2222 333444
Q ss_pred CCCcCeEeecCC
Q 045942 84 VTTLKSLAIAEC 95 (131)
Q Consensus 84 l~~L~~L~i~~~ 95 (131)
+++|++|++.++
T Consensus 128 l~~L~~L~l~~n 139 (285)
T 1ozn_A 128 LAALQYLYLQDN 139 (285)
T ss_dssp CTTCCEEECCSS
T ss_pred CcCCCEEECCCC
Confidence 445555554443
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.05 E-value=3.8e-09 Score=74.53 Aligned_cols=85 Identities=26% Similarity=0.339 Sum_probs=41.6
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCC-CCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPE-DMHH 83 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~-~~~~ 83 (131)
.+..+ +|++|+++++ .+..+|...+ ..+++|++|+++++ .+..+|. .+..+++|++|++.++. +..++. .+..
T Consensus 56 ~~~~l~~L~~L~l~~n-~l~~i~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 131 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDN-KLQTLPAGIF-KELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDS 131 (270)
T ss_dssp SSSSCTTCCEEECCSS-CCSCCCTTTT-SSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTT
T ss_pred HhcCCCCCCEEECCCC-ccCeeChhhh-cCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCc
Confidence 34555 6666666554 3445554332 44556666666655 3444442 23445555555555432 333332 2344
Q ss_pred CCCcCeEeecCC
Q 045942 84 VTTLKSLAIAEC 95 (131)
Q Consensus 84 l~~L~~L~i~~~ 95 (131)
+++|++|++.++
T Consensus 132 l~~L~~L~Ls~n 143 (270)
T 2o6q_A 132 LTKLTYLSLGYN 143 (270)
T ss_dssp CTTCCEEECCSS
T ss_pred CcCCCEEECCCC
Confidence 455555555443
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.04 E-value=2.7e-09 Score=75.62 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=55.8
Q ss_pred CCCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED- 80 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~- 80 (131)
+..+..+ +|++|+++++..+..++ ..+ ..+++|+.|+++++ .+..+ |..+..+++|++|++.++. +..++..
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 148 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDT 148 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHHHh--cCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhH
Confidence 4556666 78888887765566663 444 66777777777777 34444 4456667777777776653 4455443
Q ss_pred CCCCCCcCeEeecCC
Q 045942 81 MHHVTTLKSLAIAEC 95 (131)
Q Consensus 81 ~~~l~~L~~L~i~~~ 95 (131)
+..+++|++|++.++
T Consensus 149 ~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGN 163 (285)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hccCCCccEEECCCC
Confidence 566667777776655
No 15
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.04 E-value=6.8e-10 Score=75.06 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=54.3
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT 85 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~ 85 (131)
.+..+ +|++|+++++.--...+..+ ..+++|+.|++++|.-....|..++.+++|++|++++|..++.+| .+..++
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~ 159 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNL--SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLP 159 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCC--TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCS
T ss_pred hhhcCCCCCEEEeECCccCcccChhh--cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCC
Confidence 34445 56666665543222234444 555666666666652222234445556666666666554455554 345555
Q ss_pred CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
+|++|++.+|.--. -..+..+.+++.+.+.++.+.
T Consensus 160 ~L~~L~l~~n~i~~-------~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 160 ELKSLNIQFDGVHD-------YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEECTTBCCCC-------CTTGGGCSSCCEEEECBC---
T ss_pred CCCEEECCCCCCcC-------hHHhccCCCCCEEEeeCcccC
Confidence 66666665543110 012344555566666665554
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.03 E-value=4.6e-10 Score=89.83 Aligned_cols=113 Identities=15% Similarity=0.110 Sum_probs=56.2
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT 85 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~ 85 (131)
.++.+ +|++|++++|.....+|..+ ..+++|+.|++++|.....+|..++.+++|+.|++.+|...+.+|..+..++
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 34444 45555554443333444444 4555555555555533334455555555555555555544445555555555
Q ss_pred CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942 86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMI 126 (131)
Q Consensus 86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 126 (131)
+|++|++.+|.... .....+..+++++.+.+.++.+
T Consensus 515 ~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 515 NLAILKLSNNSFSG-----NIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp TCCEEECCSSCCEE-----ECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCEEECCCCcccC-----cCCHHHcCCCCCCEEECCCCcc
Confidence 56666555554211 1122334455666666665554
No 17
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.02 E-value=8.7e-10 Score=76.44 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=47.5
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPEDMHHV 84 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~~~~l 84 (131)
.+..+ +|++|+++++..++.++...+ ..+++|+.|++++|..+..+|. .+..+++|++|++.+|. +..+|. +..+
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l 126 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKV 126 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccc
Confidence 34555 666666666543555554222 5566666666665335555552 34556666666666543 444554 4455
Q ss_pred CCcC---eEeecCC
Q 045942 85 TTLK---SLAIAEC 95 (131)
Q Consensus 85 ~~L~---~L~i~~~ 95 (131)
++|+ +|++.++
T Consensus 127 ~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 127 YSTDIFFILEITDN 140 (239)
T ss_dssp CBCCSEEEEEEESC
T ss_pred cccccccEEECCCC
Confidence 5555 6666555
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.02 E-value=1.4e-10 Score=83.71 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCCCCCCC-ccceEeecCcCCC-cccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC
Q 045942 4 HDRKNTRP-HLRRVVIGEITQF-LELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM 81 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~~l-~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~ 81 (131)
.|..+.++ +|++|+++++..+ ..+|..+ +.+++|++|+++++.-...+|..+..+++|++|++++|.....+|..+
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 45556666 7777777742333 3566666 677777777777773333666667777777777777765444666667
Q ss_pred CCCCCcCeEeecCCc
Q 045942 82 HHVTTLKSLAIAECP 96 (131)
Q Consensus 82 ~~l~~L~~L~i~~~~ 96 (131)
..+++|++|++.++.
T Consensus 146 ~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 146 SSLPNLVGITFDGNR 160 (313)
T ss_dssp GGCTTCCEEECCSSC
T ss_pred hcCCCCCeEECcCCc
Confidence 777777777777654
No 19
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=3.8e-09 Score=71.25 Aligned_cols=106 Identities=8% Similarity=0.178 Sum_probs=74.9
Q ss_pred ccceEeecCcCCCcccchh--hhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCC-CCCCCCCc
Q 045942 12 HLRRVVIGEITQFLELPQW--LLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPE-DMHHVTTL 87 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~--~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L 87 (131)
+|++|+++++ .+..++.. + ..+++|+.|+++++ .+..+ |..+..+++|++|+++++. +..++. .+..+++|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLF--GRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQL 104 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSG--GGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTC
T ss_pred CCCEEECCCC-cCCccCCcccc--ccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCC
Confidence 7888888876 56677642 5 67888899988888 55555 5678888888888888764 555554 47778888
Q ss_pred CeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 88 KSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 88 ~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
++|++.++.--. .....+..+.++..+.+.++.+.
T Consensus 105 ~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 105 KTLNLYDNQISC-----VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCSSCCCE-----ECTTSSTTCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCe-----eCHHHhhcCCCCCEEEeCCCCcc
Confidence 888888765221 11234556777888888877654
No 20
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.01 E-value=3.3e-10 Score=74.57 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=47.1
Q ss_pred CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCccc-CCCCCCCcccccccccccccccCcCC--CCC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMA-LPGSLKDLEALETLVIARCPKLSSLP--EDM 81 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~-lp~~l~~l~sL~~L~l~~c~~l~~lp--~~~ 81 (131)
..+..+ +|++|++++|. +..+ ..+ ..+++|+.|++++| .+.. +|..+..+++|+.|++++| .+..+| ..+
T Consensus 43 ~~~~~l~~L~~L~l~~n~-l~~~-~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l 116 (168)
T 2ell_A 43 GLTAEFVNLEFLSLINVG-LISV-SNL--PKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPL 116 (168)
T ss_dssp SCCGGGGGCCEEEEESSC-CCCC-SSC--CCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGG
T ss_pred HHHHhCCCCCEEeCcCCC-CCCh-hhh--ccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHH
Confidence 334444 66666665543 4444 334 55666666666666 3333 4444444666666666654 355554 445
Q ss_pred CCCCCcCeEeecCCc
Q 045942 82 HHVTTLKSLAIAECP 96 (131)
Q Consensus 82 ~~l~~L~~L~i~~~~ 96 (131)
..+++|++|++.+|+
T Consensus 117 ~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 117 KKLECLKSLDLFNCE 131 (168)
T ss_dssp SSCSCCCEEECCSSG
T ss_pred hcCCCCCEEEeeCCc
Confidence 566666666666654
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.00 E-value=2.7e-09 Score=80.17 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=28.8
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCccccccccccc
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIAR 70 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~ 70 (131)
+..+ +|++|+++++ .+..+|...+ ..+++|+.|++++|..+..++. .+..+++|++|++.+
T Consensus 132 ~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 132 FVYLSKLKELWLRNN-PIESIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp SCSCSSCCEEECCSC-CCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred hhccccCceeeCCCC-cccccCHHHh-hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 4455 6666666554 3444443222 4455555555555444444442 234444444444444
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.00 E-value=2.6e-09 Score=80.02 Aligned_cols=115 Identities=11% Similarity=0.108 Sum_probs=75.8
Q ss_pred CCCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCCC
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPEDM 81 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~~ 81 (131)
+..+..+ +|++|+++++. +..++ ..+ ..+++|+.|++++| .+..+ |..++.+++|++|++++|......|..+
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNE-INKIDDNAF--WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred hhhcccCCCCCEEECCCCc-ccccChhHh--cCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 4456666 78888887764 44443 455 67788888888877 45555 4556778888888888764333336667
Q ss_pred CCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942 82 HHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 82 ~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 128 (131)
..+++|++|++.++.-- ......+..+++++.+.+.++.+..
T Consensus 368 ~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 368 LGLPNLKELALDTNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccEEECCCCccc-----cCCHhHhccCCcccEEEccCCCccc
Confidence 77888888888876421 1112234567788888888887653
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.00 E-value=6.1e-09 Score=73.61 Aligned_cols=86 Identities=22% Similarity=0.290 Sum_probs=37.1
Q ss_pred cCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCCCCcCeEeecCCchhhhhcCCCCCCCCC
Q 045942 34 CCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHVTTLKSLAIAECPALSERCKPPTGEDWP 111 (131)
Q Consensus 34 ~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~ 111 (131)
..+++|+.|++++| .+..+|.. ++.+++|+.|++++| .+..+|.. +..+++|++|++.+|.-- ......+.
T Consensus 130 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~ 202 (272)
T 3rfs_A 130 DKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLK-----SVPDGVFD 202 (272)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-----CCCTTTTT
T ss_pred ccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCC-----ccCHHHHh
Confidence 34444444444444 33333322 344444444444443 23333332 344445555555444211 11112234
Q ss_pred cccCCCeeEecCccc
Q 045942 112 KIAHIPEILLDDKMI 126 (131)
Q Consensus 112 ~i~~l~~l~~~~~~~ 126 (131)
.+.+++.+.+.++.+
T Consensus 203 ~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPW 217 (272)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred CCcCCCEEEccCCCc
Confidence 556666666666654
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.00 E-value=1.1e-08 Score=71.40 Aligned_cols=113 Identities=17% Similarity=0.252 Sum_probs=75.6
Q ss_pred CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCC-CCC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPE-DMH 82 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~-~~~ 82 (131)
..+..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+|.. +..+++|++|+++++ .+..+|. .+.
T Consensus 77 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 152 (251)
T 3m19_A 77 GVFDDLTELGTLGLANN-QLASLPLGVF-DHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFD 152 (251)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred hHhccCCcCCEEECCCC-cccccChhHh-cccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcC
Confidence 345666 8888888775 4666664433 67788888888877 66666654 567788888888775 5666665 467
Q ss_pred CCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 83 HVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 83 ~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
.+++|++|++.++.-- ......+..+.+++.+.+.++.+.
T Consensus 153 ~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQ-----SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcCCCEEECCCCcCC-----ccCHHHHhCCCCCCEEEeeCCcee
Confidence 7778888888776421 111234556677778888777764
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.00 E-value=4.5e-10 Score=89.68 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=78.0
Q ss_pred CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCC
Q 045942 4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMH 82 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~ 82 (131)
.|..+..+ +|++|+++++ .+..+|..+ +.+++|+.|++++| .+..+|..++.+++|++|++++| .+..+|..+.
T Consensus 239 l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~ 313 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNGN-SLTELPAEI--KNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFG 313 (727)
T ss_dssp CCGGGGGCCSCSCCBCTTS-CCSCCCGGG--GGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTT
T ss_pred CChhhcCCCCCCEEEeeCC-cCcccChhh--hCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-CCCccChhhh
Confidence 34456667 9999999987 577999888 89999999999999 67899999999999999999986 6789999999
Q ss_pred CCCCcCeEeecCCc
Q 045942 83 HVTTLKSLAIAECP 96 (131)
Q Consensus 83 ~l~~L~~L~i~~~~ 96 (131)
.+++|+.|++.++.
T Consensus 314 ~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 314 NLCNLQFLGVEGNP 327 (727)
T ss_dssp SCTTCCCEECTTSC
T ss_pred cCCCccEEeCCCCc
Confidence 99999999999876
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.99 E-value=4.2e-10 Score=88.41 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=58.5
Q ss_pred cccchhhhccCCCCcCEEeecCCCCccc------------------CCCCCC--CcccccccccccccccCcCCCCCCCC
Q 045942 25 LELPQWLLQCCTDTLQSLIIVDCPNFMA------------------LPGSLK--DLEALETLVIARCPKLSSLPEDMHHV 84 (131)
Q Consensus 25 ~~lp~~~~~~~l~~L~~L~l~~~~~l~~------------------lp~~l~--~l~sL~~L~l~~c~~l~~lp~~~~~l 84 (131)
..+|..+ +.+++|+.|+++++. +.. +|..++ ++++|++|++++|...+.+|..+.++
T Consensus 196 ~~ip~~l--~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 196 TFVSKAV--MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEECGGG--GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred ccCCHHH--hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3477777 788999999999884 665 888888 89999999999888888889888899
Q ss_pred CCcCeEeecCCc
Q 045942 85 TTLKSLAIAECP 96 (131)
Q Consensus 85 ~~L~~L~i~~~~ 96 (131)
++|++|++.+|.
T Consensus 273 ~~L~~L~Ls~n~ 284 (636)
T 4eco_A 273 PEMQLINVACNR 284 (636)
T ss_dssp SSCCEEECTTCT
T ss_pred CCCCEEECcCCC
Confidence 999999998886
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.99 E-value=7.6e-09 Score=72.99 Aligned_cols=83 Identities=22% Similarity=0.291 Sum_probs=42.5
Q ss_pred CCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCC
Q 045942 9 TRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVT 85 (131)
Q Consensus 9 ~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~ 85 (131)
..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..++. .++.+++|++|+++++ .+..+|.. +..++
T Consensus 82 ~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 82 KELKNLETLWVTDN-KLQALPIGVF-DQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLT 157 (270)
T ss_dssp SSCTTCCEEECCSS-CCCCCCTTTT-TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred cCCCCCCEEECCCC-cCCcCCHhHc-ccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCc
Confidence 445 6677766654 3555554322 45566666666655 3444432 2445555555555554 34444433 34455
Q ss_pred CcCeEeecCC
Q 045942 86 TLKSLAIAEC 95 (131)
Q Consensus 86 ~L~~L~i~~~ 95 (131)
+|++|++.++
T Consensus 158 ~L~~L~L~~n 167 (270)
T 2o6q_A 158 SLKELRLYNN 167 (270)
T ss_dssp TCCEEECCSS
T ss_pred ccceeEecCC
Confidence 5555555443
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.98 E-value=5.6e-09 Score=70.60 Aligned_cols=106 Identities=13% Similarity=0.244 Sum_probs=78.5
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCC-CCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPE-DMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L~~ 89 (131)
+|++|+++++ .+..+|..+ ..+++|+.|+++++ .+..++ ..+..+++|++|+++++ .+..++. .+..+++|+.
T Consensus 32 ~l~~L~L~~n-~i~~ip~~~--~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 32 DVTELYLDGN-QFTLVPKEL--SNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp TCCEEECCSS-CCCSCCGGG--GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCE
T ss_pred CCCEEECCCC-cCchhHHHh--hcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCE
Confidence 7899999875 577888777 78899999999988 676776 45788899999999886 4666654 5788889999
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
|++.++.--. .....+..+.++..+.+.++.+.
T Consensus 107 L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 107 LSLHGNDISV-----VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCB-----CCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCCCCe-----eChhhhhcCccccEEEeCCCCee
Confidence 9988765211 11223556777888888877653
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.98 E-value=3e-09 Score=82.16 Aligned_cols=108 Identities=16% Similarity=0.241 Sum_probs=86.5
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~ 89 (131)
++++|+++++ .++.+|+..| ..+++|++|++++| .+..+|+ .+..+++|++|++++| .++.+|.. +..+++|++
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f-~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCE
T ss_pred CCCEEEeeCC-CCCCCCHHHH-hCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCE
Confidence 8999999985 6888986433 88999999999999 7888875 5889999999999987 58888865 788999999
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 128 (131)
|++.+|.- . ......+..+++++.+.+.++.+++
T Consensus 129 L~Ls~N~l-~----~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 129 LVAVETNL-A----SLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp EECTTSCC-C----CSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcC-C----CCChhhhhcCcccCeeccccCcccc
Confidence 99998752 1 1122335678889999998887764
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.97 E-value=3.4e-09 Score=75.81 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=48.9
Q ss_pred CCCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcc--cCCCCCCCcccccccccccccccCcC-CCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFM--ALPGSLKDLEALETLVIARCPKLSSL-PEDM 81 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l~sL~~L~l~~c~~l~~l-p~~~ 81 (131)
.+..+ +|++|+++++. +..+ +..+ ..+++|+.|+++++ .+. .+|..+..+++|++|++++|. +..+ |..+
T Consensus 121 ~~~~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 195 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTH-TRVAFNGIF--NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF 195 (306)
T ss_dssp TTTTCTTCCEEECTTSC-CEECSTTTT--TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred hhhhccCCCEEECCCCc-CCccchhhc--ccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHh
Confidence 45555 66777766653 3333 3334 55666777777666 333 255566666677777776653 3333 4456
Q ss_pred CCCCCcCeEeecCCc
Q 045942 82 HHVTTLKSLAIAECP 96 (131)
Q Consensus 82 ~~l~~L~~L~i~~~~ 96 (131)
..+++|++|++.++.
T Consensus 196 ~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 196 NSLSSLQVLNMSHNN 210 (306)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred cCCCCCCEEECCCCc
Confidence 666666666666554
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.97 E-value=1.8e-09 Score=78.85 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=44.4
Q ss_pred CCCCC-ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCC--CC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPE--DM 81 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~--~~ 81 (131)
.+..+ +|++|+++++ .+..++. .+ ..+++|++|+++++ .+..+|.. ++.+++|++|+++++ .+..+|. .+
T Consensus 71 ~~~~l~~L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 145 (353)
T 2z80_A 71 DLQRCVNLQALVLTSN-GINTIEEDSF--SSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLF 145 (353)
T ss_dssp TTTTCTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSC
T ss_pred HhccCCCCCEEECCCC-ccCccCHhhc--CCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhh
Confidence 35555 6666666554 3444432 33 55566666666655 44455433 455556666666554 3445554 34
Q ss_pred CCCCCcCeEeecCC
Q 045942 82 HHVTTLKSLAIAEC 95 (131)
Q Consensus 82 ~~l~~L~~L~i~~~ 95 (131)
..+++|++|++.+|
T Consensus 146 ~~l~~L~~L~l~~n 159 (353)
T 2z80_A 146 SHLTKLQILRVGNM 159 (353)
T ss_dssp TTCTTCCEEEEEES
T ss_pred ccCCCCcEEECCCC
Confidence 55555555555554
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.97 E-value=4.1e-10 Score=81.32 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=71.5
Q ss_pred CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC
Q 045942 3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM 81 (131)
Q Consensus 3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~ 81 (131)
..|..++.+ +|++|+++++.-...+|..+ ..+++|++|+++++.-...+|..++.+++|++|++.+|.....+|..+
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 169 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH
Confidence 346667788 99999998875444777777 788999999999884334778888888999999998876544778888
Q ss_pred CCCC-CcCeEeecCCc
Q 045942 82 HHVT-TLKSLAIAECP 96 (131)
Q Consensus 82 ~~l~-~L~~L~i~~~~ 96 (131)
..++ +|++|++.++.
T Consensus 170 ~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 170 GSFSKLFTSMTISRNR 185 (313)
T ss_dssp GCCCTTCCEEECCSSE
T ss_pred hhhhhcCcEEECcCCe
Confidence 7777 88888887765
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.96 E-value=3.2e-09 Score=81.49 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=79.1
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCc-ccCCCCCCCcccccccccccccccCcCCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNF-MALPGSLKDLEALETLVIARCPKLSSLPEDMHHV 84 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l-~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l 84 (131)
.+..+ +|++|++++|......|..+ ..+++|+.|++++|... ..+|..+..+++|+.|++++|......|..+..+
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 45666 88888888775444445555 67888888888888433 3577778888888888888875444446777888
Q ss_pred CCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 85 TTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 85 ~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
++|++|++.+|. +.. .....+..+.+++.+.+.++.+.
T Consensus 494 ~~L~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 494 SSLQVLNMASNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCEEeCCCCc-CCC----CCHHHhhcccCCcEEEecCCccc
Confidence 888888888774 221 12233566778888888888765
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.96 E-value=3e-09 Score=80.12 Aligned_cols=83 Identities=14% Similarity=0.281 Sum_probs=43.3
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPEDMHHVT 85 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~ 85 (131)
+..+ +|++|+++++ .+..+|...+ ..+++|+.|++++|..+..++. .+..+++|+.|++++| .+..+| .+..++
T Consensus 143 ~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~ 218 (452)
T 3zyi_A 143 FEYLSKLRELWLRNN-PIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLV 218 (452)
T ss_dssp SSSCTTCCEEECCSC-CCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCT
T ss_pred hcccCCCCEEECCCC-CcceeCHhHH-hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccc
Confidence 5555 6777777665 3555554322 5566666666666555555553 2445555555555543 233333 233344
Q ss_pred CcCeEeecC
Q 045942 86 TLKSLAIAE 94 (131)
Q Consensus 86 ~L~~L~i~~ 94 (131)
+|++|++.+
T Consensus 219 ~L~~L~Ls~ 227 (452)
T 3zyi_A 219 GLEELEMSG 227 (452)
T ss_dssp TCCEEECTT
T ss_pred cccEEECcC
Confidence 444444443
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.96 E-value=3.2e-09 Score=79.52 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=10.3
Q ss_pred CCcccCCCeeEecCcccC
Q 045942 110 WPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 110 ~~~i~~l~~l~~~~~~~~ 127 (131)
+..+.+++.+.+.++.+.
T Consensus 150 ~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp GGGCTTCCEEECTTCCBS
T ss_pred cCCCCcccEEeCCCCccc
Confidence 344556666666665544
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.96 E-value=5.6e-09 Score=78.88 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=42.1
Q ss_pred CCCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPEDMHH 83 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~~~~ 83 (131)
.+.++ +|++|+++++ .+..+ |..+ ..+++|+.|+++++ .+..+|.. +..+++|++|++++|......|..+..
T Consensus 51 ~~~~l~~L~~L~L~~n-~i~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 51 EFASFPHLEELELNEN-IVSAVEPGAF--NNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp TTTTCTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred HccCCCCCCEEECCCC-ccCEeChhhh--hCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccc
Confidence 34445 5555555554 23333 2333 45555555555555 34455432 445555555555554322222334555
Q ss_pred CCCcCeEeecCC
Q 045942 84 VTTLKSLAIAEC 95 (131)
Q Consensus 84 l~~L~~L~i~~~ 95 (131)
+++|++|++.++
T Consensus 127 l~~L~~L~l~~n 138 (477)
T 2id5_A 127 LYNLKSLEVGDN 138 (477)
T ss_dssp CTTCCEEEECCT
T ss_pred cccCCEEECCCC
Confidence 555555555544
No 37
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.95 E-value=5.3e-09 Score=72.34 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=73.8
Q ss_pred CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCC-CCCC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPE-DMHH 83 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~ 83 (131)
..+..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+|..+..+++|++|+++++ .+..+|. .+..
T Consensus 82 ~~~~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 157 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTN-QLTVLPSAVF-DRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDR 157 (229)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTT
T ss_pred hhcccCCCcCEEECCCC-cCCccChhHh-CcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhC
Confidence 345777 9999999986 6788886543 78999999999998 78899999999999999999986 6777875 4788
Q ss_pred CCCcCeEeecCCc
Q 045942 84 VTTLKSLAIAECP 96 (131)
Q Consensus 84 l~~L~~L~i~~~~ 96 (131)
+++|+.|++.+++
T Consensus 158 l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 158 LSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECTTSC
T ss_pred CCCCCEEEeeCCC
Confidence 9999999998776
No 38
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=1.2e-08 Score=67.69 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=78.4
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~ 89 (131)
+|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++ .+..+|.. +..+++|++
T Consensus 29 ~l~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 29 SATRLELESN-KLQSLPHGVF-DKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCcEEEeCCC-cccEeCHHHh-cCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence 8899999886 4667775433 67899999999988 67777754 578899999999886 56677665 577889999
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
|++.++. +. ......+..+.+++.+.+.++.+.
T Consensus 105 L~l~~N~-l~----~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 105 LALDTNQ-LK----SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EECCSSC-CS----CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECcCCc-ce----EeCHHHhcCCcccCEEEecCCCee
Confidence 9998774 22 111223456778888888888764
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.95 E-value=5.8e-09 Score=84.24 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED- 80 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~- 80 (131)
+..+.++ +|++|++++|.....++ ..+ +.+++|++|++++|. +..+ |..++.+++|++|++++|.....+|..
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f--~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 117 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAF--RNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTT--SSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHh--cCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCc
Confidence 4567777 88888888776666663 445 788888888888874 4444 677888888888888887544445554
Q ss_pred -CCCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 81 -MHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 81 -~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
+.++++|++|++.+|.-.. ...+..+..+++++.+.+.++.+.
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~----~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRS----LYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCC----CCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cccccCCCCEEECCCCcccc----cccchhHhhCCCCCEEECCCCcCC
Confidence 7778888888887765211 011123455666777777666554
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.94 E-value=2.1e-09 Score=83.28 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=41.2
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcc-cCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFM-ALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT 85 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~-~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~ 85 (131)
+..+ +|++|++++|......|..+ ..+++|+.|++++|.... .+|..++.+++|+.|++++|......|..+..++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 4444 55555555543222233334 455555555555552222 1344455555555555555533223334455555
Q ss_pred CcCeEeecCC
Q 045942 86 TLKSLAIAEC 95 (131)
Q Consensus 86 ~L~~L~i~~~ 95 (131)
+|++|++.+|
T Consensus 498 ~L~~L~Ls~N 507 (606)
T 3vq2_A 498 RLQLLNMSHN 507 (606)
T ss_dssp TCCEEECCSS
T ss_pred cCCEEECCCC
Confidence 5555555554
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.94 E-value=1e-08 Score=73.42 Aligned_cols=79 Identities=24% Similarity=0.330 Sum_probs=35.0
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~ 89 (131)
+|++|+++++ .+..+|..+ ..+++|+.|+++++ .+..+| ..+..+++|++|+++++ .+..+|.. +..+++|+.
T Consensus 78 ~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 78 VLGTLDLSHN-QLQSLPLLG--QTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp TCCEEECCSS-CCSSCCCCT--TTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCEEECCCC-cCCcCchhh--ccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCE
Confidence 4444444432 233444433 44455555555544 344443 23444555555555443 23344333 334445555
Q ss_pred EeecCC
Q 045942 90 LAIAEC 95 (131)
Q Consensus 90 L~i~~~ 95 (131)
|++.++
T Consensus 153 L~L~~N 158 (290)
T 1p9a_G 153 LSLANN 158 (290)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 555443
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.94 E-value=5.9e-09 Score=74.61 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=50.9
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCC-CCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPE-DMHHVT 85 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~ 85 (131)
+..+ +|++|+++++ .+..++.. ..+++|+.|+++++ .+..+|..+..+++|+.|+++++ .+..+|. .+..++
T Consensus 51 ~~~l~~L~~L~L~~n-~l~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~ 124 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLG 124 (290)
T ss_dssp GTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCT
T ss_pred hhcCCCCCEEECCCC-ccCcccCC---CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCC
Confidence 3444 5555555443 34444432 35566666666666 56667766677777777877765 4566653 467777
Q ss_pred CcCeEeecCCc
Q 045942 86 TLKSLAIAECP 96 (131)
Q Consensus 86 ~L~~L~i~~~~ 96 (131)
+|++|++.++.
T Consensus 125 ~L~~L~L~~N~ 135 (290)
T 1p9a_G 125 ELQELYLKGNE 135 (290)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEECCCCC
Confidence 88888877653
No 43
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.93 E-value=7.1e-09 Score=71.35 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=73.9
Q ss_pred CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCC-C
Q 045942 4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPE-D 80 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~-~ 80 (131)
.|..+..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+ |..+..+++|+.|+++++ .+..++. .
T Consensus 72 ~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 147 (220)
T 2v9t_B 72 APDAFQGLRSLNSLVLYGN-KITELPKSLF-EGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGT 147 (220)
T ss_dssp CTTTTTTCSSCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred CHHHhhCCcCCCEEECCCC-cCCccCHhHc-cCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHH
Confidence 36678888 9999999986 6888987654 78999999999999 56666 467889999999999986 4677765 4
Q ss_pred CCCCCCcCeEeecCCc
Q 045942 81 MHHVTTLKSLAIAECP 96 (131)
Q Consensus 81 ~~~l~~L~~L~i~~~~ 96 (131)
+..+++|+.|++.+++
T Consensus 148 ~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCCCCCEEEeCCCC
Confidence 7889999999998776
No 44
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.93 E-value=1.4e-08 Score=68.95 Aligned_cols=108 Identities=20% Similarity=0.305 Sum_probs=83.6
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~ 89 (131)
+|++|+++++ .+..++...+ ..+++|+.|+++++ .+..+|.. +..+++|++|++.++ .+..+|.. +..+++|++
T Consensus 29 ~l~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 29 QTTYLDLETN-SLKSLPNGVF-DELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp TCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCcEEEcCCC-ccCcCChhhh-cccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCE
Confidence 8999999986 5777876543 78999999999998 67778754 678999999999986 56777765 688999999
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 128 (131)
|++.++.- . ......+..+.+++.+.+.++.+..
T Consensus 105 L~L~~N~l-~----~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 105 LALNTNQL-Q----SLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp EECCSSCC-C----CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EEcCCCcC-c----ccCHhHhccCCcCCEEECCCCccce
Confidence 99988742 1 1122335678888999988887653
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.93 E-value=1.9e-08 Score=71.05 Aligned_cols=108 Identities=22% Similarity=0.362 Sum_probs=51.4
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~ 89 (131)
+|++|++++| .+..++...+ ..+++|+.|++++| .+..+|. .++.+++|++|++.+| .+..+|.. +..+++|++
T Consensus 86 ~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 86 NLTYLILTGN-QLQSLPNGVF-DKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp TCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCEEECCCC-ccCccChhHh-cCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCE
Confidence 4444444443 2333333211 44455555555554 3333432 2445555555555554 34444433 345555555
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 128 (131)
|++.+|.- . ......+..+.+++.+.+.++.+..
T Consensus 162 L~l~~n~l-~----~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 162 LDLSYNQL-Q----SLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp EECCSSCC-C----CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECCCCCc-C----ccCHHHhcCCccCCEEECCCCcCCc
Confidence 55555531 1 1112224556677777777766543
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.93 E-value=9.3e-09 Score=77.44 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=46.9
Q ss_pred CCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCC-CC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPE-DM 81 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~-~~ 81 (131)
..+.++ +|++|+++++ .+..++ ..+ ..+++|+.|+++++ .+..+|.. +..+++|++|+++++. +..+|. .+
T Consensus 93 ~~~~~l~~L~~L~Ls~n-~i~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 167 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRN-SIRQIEVGAF--NGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAF 167 (452)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTT
T ss_pred HHcCCCCCCCEEECCCC-ccCCcChhhc--cCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHH
Confidence 445555 6666666654 344444 233 55666666666665 45555532 5556666666665543 444443 34
Q ss_pred CCCCCcCeEeecCCc
Q 045942 82 HHVTTLKSLAIAECP 96 (131)
Q Consensus 82 ~~l~~L~~L~i~~~~ 96 (131)
..+++|+.|++.+|.
T Consensus 168 ~~l~~L~~L~l~~~~ 182 (452)
T 3zyi_A 168 NRVPSLMRLDLGELK 182 (452)
T ss_dssp TTCTTCCEEECCCCT
T ss_pred hcCCcccEEeCCCCC
Confidence 555566666665544
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.90 E-value=2e-09 Score=74.60 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=57.3
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCccccc---ccccccccccCcCCCC-C
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALE---TLVIARCPKLSSLPED-M 81 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~---~L~l~~c~~l~~lp~~-~ 81 (131)
.+..+ +|++|++++|..++.+|...+ ..+++|+.|+++++ .+..+|. +..+++|+ .|++++++.+..+|.. +
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~ 151 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDAL-KELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF 151 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSE-ECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHh-CCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccc
Confidence 45566 888888887667777774332 67788888888877 4666665 55666666 7777666556666553 5
Q ss_pred CCCCCcC-eEeecCC
Q 045942 82 HHVTTLK-SLAIAEC 95 (131)
Q Consensus 82 ~~l~~L~-~L~i~~~ 95 (131)
..+++|+ +|++.++
T Consensus 152 ~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 152 QGLCNETLTLKLYNN 166 (239)
T ss_dssp TTTBSSEEEEECCSC
T ss_pred cchhcceeEEEcCCC
Confidence 5666666 6666554
No 48
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=1.5e-08 Score=67.51 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=64.4
Q ss_pred ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCCCCcC
Q 045942 12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHVTTLK 88 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~ 88 (131)
+|++|+++++ .+..++ ..+ ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++ .+..+|.. +..+++|+
T Consensus 34 ~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 34 DKQRLWLNNN-QITKLEPGVF--DHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp TCSEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCS
T ss_pred CCcEEEeCCC-CccccCHHHh--cCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCC
Confidence 8899999876 466775 445 78899999999988 78888865 578899999999875 57788775 78888999
Q ss_pred eEeecCCc
Q 045942 89 SLAIAECP 96 (131)
Q Consensus 89 ~L~i~~~~ 96 (131)
.|++.+++
T Consensus 109 ~L~L~~N~ 116 (174)
T 2r9u_A 109 HIYLYNNP 116 (174)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 99988765
No 49
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.90 E-value=2e-09 Score=70.81 Aligned_cols=108 Identities=15% Similarity=0.188 Sum_probs=80.8
Q ss_pred ccceEeecCcCCCc--ccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFL--ELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~--~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~ 89 (131)
+|++|++++|. +. .+|..+ ..+++|+.|++++| .+..+ ..+..+++|+.|++++|.....+|..+..+++|++
T Consensus 25 ~L~~L~l~~n~-l~~~~i~~~~--~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 25 AVRELVLDNCK-SNDGKIEGLT--AEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCSEEECCSCB-CBTTBCSSCC--GGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cCCEEECCCCC-CChhhHHHHH--HhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 89999999975 55 788776 78899999999999 57777 67889999999999987543336666667899999
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 128 (131)
|++.+|. +... +....+..+.++..+.+.++.+..
T Consensus 100 L~Ls~N~-l~~~---~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 100 LNLSGNK-LKDI---STLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp EECBSSS-CCSS---GGGGGGSSCSCCCEEECCSSGGGT
T ss_pred EeccCCc-cCcc---hhHHHHhcCCCCCEEEeeCCcCcc
Confidence 9999885 2210 000234556677777777776654
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.89 E-value=1.6e-08 Score=75.91 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=53.9
Q ss_pred CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCC-CCC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPE-DMH 82 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~-~~~ 82 (131)
..+.++ +|++|+++++ .+..++...+ ..+++|+.|+++++ .+..+|. .+..+++|++|+++++. +..+|. .+.
T Consensus 82 ~~~~~l~~L~~L~Ls~n-~i~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~ 157 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRN-HIRTIEIGAF-NGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFN 157 (440)
T ss_dssp TTTSSCSSCCEEECCSS-CCCEECGGGG-TTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTT
T ss_pred HHhhCCCCCCEEECCCC-cCCccChhhc-cCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhh
Confidence 456666 7777777765 3555553322 66777777777776 5666654 46667777777776653 444544 355
Q ss_pred CCCCcCeEeecCCc
Q 045942 83 HVTTLKSLAIAECP 96 (131)
Q Consensus 83 ~l~~L~~L~i~~~~ 96 (131)
.+++|++|++.+|.
T Consensus 158 ~l~~L~~L~l~~~~ 171 (440)
T 3zyj_A 158 RIPSLRRLDLGELK 171 (440)
T ss_dssp TCTTCCEEECCCCT
T ss_pred hCcccCEeCCCCCC
Confidence 66666666666544
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.89 E-value=2.1e-08 Score=73.99 Aligned_cols=85 Identities=16% Similarity=0.294 Sum_probs=39.3
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcC-CCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSL-PEDMHH 83 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~l-p~~~~~ 83 (131)
.+..+ +|++|+++++. +..+++..+ +.+++|+.|+++++ .+..+|.. ++.+++|++|++++|. +..+ |..+..
T Consensus 88 ~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 163 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQA 163 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSS
T ss_pred hccCCCCcCEEECCCCC-CCcCCHHHh-cCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccC
Confidence 34444 55555555442 333332211 44555555555555 44445433 2445555555555543 2233 223445
Q ss_pred CCCcCeEeecCC
Q 045942 84 VTTLKSLAIAEC 95 (131)
Q Consensus 84 l~~L~~L~i~~~ 95 (131)
+++|++|++.++
T Consensus 164 l~~L~~L~l~~n 175 (390)
T 3o6n_A 164 TTSLQNLQLSSN 175 (390)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 555555555544
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.89 E-value=1.4e-08 Score=78.60 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=39.1
Q ss_pred CCCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcC-CCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSL-PEDMHH 83 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~l-p~~~~~ 83 (131)
.+.++ +|++|++++|. +..+ |..+ ..+++|++|++++|.-....|..++.+++|++|++.+|. +..+ |..+..
T Consensus 52 ~~~~l~~L~~L~Ls~n~-i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~ 127 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQ-IYWIHEDTF--QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHN 127 (606)
T ss_dssp TSTTCTTCSEEECTTCC-CCEECTTTT--TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTT
T ss_pred HhccCccceEEECCCCc-cceeChhhc--cCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhcc
Confidence 44444 55555555442 2233 2333 455555555555552222223445555555555555442 3333 333445
Q ss_pred CCCcCeEeecCC
Q 045942 84 VTTLKSLAIAEC 95 (131)
Q Consensus 84 l~~L~~L~i~~~ 95 (131)
+++|++|++.++
T Consensus 128 l~~L~~L~L~~n 139 (606)
T 3t6q_A 128 QKTLESLYLGSN 139 (606)
T ss_dssp CTTCCEEECCSS
T ss_pred CCcccEEECCCC
Confidence 555555555544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.89 E-value=4.1e-09 Score=76.93 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=39.5
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC--CCCCcccccccccccccccCcCC-CCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG--SLKDLEALETLVIARCPKLSSLP-EDMHH 83 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~--~l~~l~sL~~L~l~~c~~l~~lp-~~~~~ 83 (131)
+..+ +|++|+++++ .+..+|...+ ..+++|++|+++++ .+..+|. .+..+++|++|++.+|..+..++ ..+..
T Consensus 96 ~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 96 FSSLGSLEHLDLSYN-YLSNLSSSWF-KPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTCTTCCEEECCSS-CCSSCCHHHH-TTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred cCCCCCCCEEECCCC-cCCcCCHhHh-CCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 4444 5555555443 3444443311 44555555555554 3444443 34445555555555543344432 23444
Q ss_pred CCCcCeEeecCC
Q 045942 84 VTTLKSLAIAEC 95 (131)
Q Consensus 84 l~~L~~L~i~~~ 95 (131)
+++|++|++.++
T Consensus 173 l~~L~~L~l~~n 184 (353)
T 2z80_A 173 LTFLEELEIDAS 184 (353)
T ss_dssp CCEEEEEEEEET
T ss_pred CCCCCEEECCCC
Confidence 455555555444
No 54
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.88 E-value=3.2e-09 Score=82.69 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=36.7
Q ss_pred cceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEee
Q 045942 13 LRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAI 92 (131)
Q Consensus 13 L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i 92 (131)
|++|+++++ .+..+|. + +.+++|+.|+++++ .+..+|..++.+++|+.|+++++ .+..+| .+..+++|+.|++
T Consensus 443 L~~L~Ls~n-~l~~lp~-~--~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHK-DLTVLCH-L--EQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTS-CCSSCCC-G--GGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEEC
T ss_pred ceEEEecCC-CCCCCcC-c--cccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEEC
Confidence 444555443 3444443 3 44555555555554 34455545555555555555443 344444 4444555555555
Q ss_pred cCC
Q 045942 93 AEC 95 (131)
Q Consensus 93 ~~~ 95 (131)
.++
T Consensus 516 s~N 518 (567)
T 1dce_A 516 CNN 518 (567)
T ss_dssp CSS
T ss_pred CCC
Confidence 444
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.88 E-value=1.4e-08 Score=78.68 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=60.0
Q ss_pred CCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCC-CCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLP-EDMH 82 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp-~~~~ 82 (131)
.+.++ +|++|+++++ .+..++ ..+ ..+++|++|++++| .+..+ |..++.+++|++|++++|. +..++ ..+.
T Consensus 51 ~~~~l~~L~~L~Ls~n-~l~~i~~~~~--~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 125 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRC-EIETIEDKAW--HGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIG 125 (606)
T ss_dssp TTTTCTTCCEEECTTC-CCCEECTTTT--TTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCT
T ss_pred hccCCccCcEEeCCCC-cccccCHHHh--hchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCc-cccccccccC
Confidence 45555 6666666655 344443 334 56666666666666 34444 5556666666666666653 33333 4466
Q ss_pred CCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 83 HVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 83 ~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
++++|++|++.+|.-.. ...+..+..+++++.+.+.++.+.
T Consensus 126 ~l~~L~~L~L~~n~l~~----~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHS----CKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TCTTCCEEECCSSCCCC----CCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEeCCCCcccc----eechHhHhhcCCCCEEEccCCcce
Confidence 66666666666553110 001223445556666666655543
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.87 E-value=4.2e-09 Score=80.64 Aligned_cols=86 Identities=16% Similarity=0.240 Sum_probs=47.9
Q ss_pred CCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccC--cCCCC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLS--SLPED 80 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~--~lp~~ 80 (131)
..+.++ +|++|+++++ .+..++ ..+ ..+++|++|++++| .+..+|.. ++.+++|++|++++|. +. ..|..
T Consensus 44 ~~~~~l~~L~~L~Ls~n-~i~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 118 (549)
T 2z81_A 44 GDLRACANLQVLILKSS-RINTIEGDAF--YSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL 118 (549)
T ss_dssp STTSSCTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS
T ss_pred hhhhcCCcccEEECCCC-CcCccChhhc--cccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCc-ccccchhhh
Confidence 445555 6666666654 344444 334 56666666666666 44444432 5666666666666653 33 23445
Q ss_pred CCCCCCcCeEeecCCc
Q 045942 81 MHHVTTLKSLAIAECP 96 (131)
Q Consensus 81 ~~~l~~L~~L~i~~~~ 96 (131)
+.++++|++|++.+|.
T Consensus 119 ~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CTTCTTCCEEEEEESS
T ss_pred hhccCCccEEECCCCc
Confidence 5666666666666554
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.87 E-value=9.5e-09 Score=73.45 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=78.7
Q ss_pred CCCCCCC-ccceEeecCcCCCc-ccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCC-C
Q 045942 5 DRKNTRP-HLRRVVIGEITQFL-ELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPE-D 80 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~-~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~-~ 80 (131)
+..+..+ +|++|+++++.... .+|..+ ..+++|+.|++++| .+..+ |..+..+++|++|++++|. +..++. .
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 218 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFP 218 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGG
T ss_pred hhhcccCcCCCEEECCCCccccccchhHH--hhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhh
Confidence 4456777 89999998864332 366666 78889999999988 55555 5678888999999998864 555554 5
Q ss_pred CCCCCCcCeEeecCCchhhhhcCCCCCCCCCcc-cCCCeeEecCcccC
Q 045942 81 MHHVTTLKSLAIAECPALSERCKPPTGEDWPKI-AHIPEILLDDKMIK 127 (131)
Q Consensus 81 ~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i-~~l~~l~~~~~~~~ 127 (131)
+..+++|+.|++.++.-.. .....+..+ .++..+.+.++.+.
T Consensus 219 ~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp GTTCTTCCEEECTTSCCCB-----CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ccCcccCCEeECCCCCCcc-----cCHHHHHhhhccCCEEEccCCCee
Confidence 6778889999988875321 112223344 36777877777654
No 58
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.86 E-value=4e-09 Score=68.00 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=67.4
Q ss_pred ccceEeecCcCCCc--ccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFL--ELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~--~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~ 89 (131)
+|++|++++|. +. .+|..+ ..+++|+.|++++| .+..+ ..++.+++|+.|++++|..-..+|..+..+++|++
T Consensus 18 ~l~~L~l~~n~-l~~~~~~~~~--~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 18 DVKELVLDNSR-SNEGKLEGLT--DEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GCSEEECTTCB-CBTTBCCSCC--TTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred cCeEEEccCCc-CChhHHHHHH--hhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 67788887764 44 677665 67778888888777 56666 55777777888888776433335555555677778
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 128 (131)
|++.+|.- .... ....+..+++++.+.+.++.+..
T Consensus 93 L~ls~N~i-~~~~---~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 93 LNLSGNKI-KDLS---TIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp EECTTSCC-CSHH---HHGGGGGCTTCCEEECTTCGGGG
T ss_pred EECCCCcC-CChH---HHHHHhhCCCCCEEeCcCCcccc
Confidence 87776651 1000 00223456666777777666543
No 59
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.86 E-value=1.9e-08 Score=66.68 Aligned_cols=87 Identities=20% Similarity=0.355 Sum_probs=71.6
Q ss_pred CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MH 82 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~ 82 (131)
..+..+ +|++|+++++ .+..+|...+ ..+++|+.|+++++ .+..+|.. +..+++|++|++.++ .+..+|.. +.
T Consensus 46 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 121 (177)
T 2o6r_A 46 GVFDKLTQLTKLSLSQN-QIQSLPDGVF-DKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFD 121 (177)
T ss_dssp TTTTTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred HHhcCcccccEEECCCC-cceEeChhHc-cCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhc
Confidence 346777 9999999986 5778886533 78999999999998 67777754 688999999999986 57788876 47
Q ss_pred CCCCcCeEeecCCc
Q 045942 83 HVTTLKSLAIAECP 96 (131)
Q Consensus 83 ~l~~L~~L~i~~~~ 96 (131)
.+++|++|++.+++
T Consensus 122 ~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 122 RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcccCEEEecCCC
Confidence 78999999999876
No 60
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.86 E-value=2.4e-08 Score=68.72 Aligned_cols=88 Identities=10% Similarity=0.254 Sum_probs=72.5
Q ss_pred CCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcC-CCCC
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSL-PEDM 81 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~l-p~~~ 81 (131)
+..+..+ +|++|+++++ .+..++...+ ..+++|++|+++++ .+..+ |..+..+++|+.|+++++. +..+ |..+
T Consensus 74 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 149 (220)
T 2v70_A 74 EGAFEGASGVNEILLTSN-RLENVQHKMF-KGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAF 149 (220)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCGGGG-TTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTT
T ss_pred HHHhCCCCCCCEEECCCC-ccCccCHhHh-cCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCc-CCEECHHHh
Confidence 3467888 9999999986 5777776533 88999999999999 56666 5778899999999999864 6666 6778
Q ss_pred CCCCCcCeEeecCCc
Q 045942 82 HHVTTLKSLAIAECP 96 (131)
Q Consensus 82 ~~l~~L~~L~i~~~~ 96 (131)
..+++|+.|++.+++
T Consensus 150 ~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 150 DTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCTTCCEEECCSCC
T ss_pred cCCCCCCEEEecCcC
Confidence 899999999999876
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.86 E-value=2.4e-08 Score=77.81 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=45.0
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPEDMHHV 84 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~~~~l 84 (131)
.++.+ +|++|+++++. +..+|+..+ +.+++|+.|++++| .+..+|.. ++.+++|++|++++|......|..+..+
T Consensus 94 ~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred HhcCCCCCCEEECCCCc-CCCCCHHHH-cCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 45555 56666665543 444443222 55566666666655 45555543 3556666666665553222223345555
Q ss_pred CCcCeEeecCC
Q 045942 85 TTLKSLAIAEC 95 (131)
Q Consensus 85 ~~L~~L~i~~~ 95 (131)
++|++|++.++
T Consensus 171 ~~L~~L~L~~N 181 (597)
T 3oja_B 171 TSLQNLQLSSN 181 (597)
T ss_dssp TTCCEEECTTS
T ss_pred CcCcEEECcCC
Confidence 66666666554
No 62
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.85 E-value=1.2e-08 Score=68.73 Aligned_cols=85 Identities=21% Similarity=0.297 Sum_probs=69.5
Q ss_pred CCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPEDMHHV 84 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l 84 (131)
+..+ +|++|+++++ .+..+ |..+ ..+++|+.|+++++ .+..++ ..+..+++|++|+++++..-...|..+..+
T Consensus 50 ~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (192)
T 1w8a_A 50 FGRLPHLVKLELKRN-QLTGIEPNAF--EGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125 (192)
T ss_dssp GGGCTTCCEEECCSS-CCCCBCTTTT--TTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred cccCCCCCEEECCCC-CCCCcCHhHc--CCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC
Confidence 6677 9999999986 46666 5566 88999999999998 676666 458889999999999875444457778899
Q ss_pred CCcCeEeecCCc
Q 045942 85 TTLKSLAIAECP 96 (131)
Q Consensus 85 ~~L~~L~i~~~~ 96 (131)
++|++|++.+++
T Consensus 126 ~~L~~L~L~~N~ 137 (192)
T 1w8a_A 126 NSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEeCCCC
Confidence 999999998775
No 63
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.85 E-value=1.7e-08 Score=74.14 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=39.4
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcC-CCCCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSL-PEDMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~l-p~~~~~l~~L~~ 89 (131)
+|++|+++++ .+..++...+ ..+++|+.|+++++ .+..++. .+..+++|+.|+++++. +..+ |..+..+++|+.
T Consensus 65 ~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 65 NLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp TCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred ccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCE
Confidence 5555555543 3444443211 45555555555555 3444442 34455555555555543 3333 334555556666
Q ss_pred EeecCC
Q 045942 90 LAIAEC 95 (131)
Q Consensus 90 L~i~~~ 95 (131)
|++.++
T Consensus 141 L~L~~N 146 (361)
T 2xot_A 141 LYLSQN 146 (361)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 655554
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.84 E-value=2.8e-08 Score=70.06 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=23.2
Q ss_pred ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCCC-CCCCccccccccccc
Q 045942 12 HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIAR 70 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~ 70 (131)
+|++|+++++ .+..++. .+ ..+++|+.|++++| .+..++. .+..+++|++|++++
T Consensus 29 ~l~~L~ls~n-~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSYSF--FSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp TCCEEECTTC-CCCEECTTTT--TTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CccEEECCCC-cccccCHhHh--ccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCC
Confidence 3445555443 2333332 22 34444444444444 3333332 344444444444444
No 65
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.84 E-value=4.6e-09 Score=81.83 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=74.6
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcC--CCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSL--PEDMHHV 84 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~l--p~~~~~l 84 (131)
++.+ +|++|+++++ .+..+|..+ +.+++|+.|+++++ .+..+| .++.+++|+.|++++| .+..+ |..+..+
T Consensus 459 ~~~l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l 532 (567)
T 1dce_A 459 LEQLLLVTHLDLSHN-RLRALPPAL--AALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSC 532 (567)
T ss_dssp GGGGTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGC
T ss_pred ccccccCcEeecCcc-cccccchhh--hcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcC
Confidence 7777 9999999986 577999988 89999999999998 788898 7999999999999986 56777 8889999
Q ss_pred CCcCeEeecCCch
Q 045942 85 TTLKSLAIAECPA 97 (131)
Q Consensus 85 ~~L~~L~i~~~~~ 97 (131)
++|+.|++.+++-
T Consensus 533 ~~L~~L~L~~N~l 545 (567)
T 1dce_A 533 PRLVLLNLQGNSL 545 (567)
T ss_dssp TTCCEEECTTSGG
T ss_pred CCCCEEEecCCcC
Confidence 9999999998873
No 66
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=1.9e-08 Score=73.13 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=71.6
Q ss_pred CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC
Q 045942 3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED 80 (131)
Q Consensus 3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~ 80 (131)
..|. +..+ +|++|++++++.+..+|...| ..+++|+.|+++++ .+..+|. .+..+++|+.|+++++ .+..+|..
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 98 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK 98 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence 3466 7888 899999987567888885433 88999999999998 6777764 5789999999999885 68888876
Q ss_pred CCCCCCcCeEeecCCc
Q 045942 81 MHHVTTLKSLAIAECP 96 (131)
Q Consensus 81 ~~~l~~L~~L~i~~~~ 96 (131)
.....+|+.|++.+++
T Consensus 99 ~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred HcccCCceEEEeeCCC
Confidence 5443359999998665
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.83 E-value=8.7e-09 Score=78.88 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=72.3
Q ss_pred CCCCCCC-ccceEeecCcCCCcccchh-hhccCCCCcCEEeecCCCCccc--CCCCCCCcccccccccccccccCcCCC-
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELPQW-LLQCCTDTLQSLIIVDCPNFMA--LPGSLKDLEALETLVIARCPKLSSLPE- 79 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp~~-~~~~~l~~L~~L~l~~~~~l~~--lp~~l~~l~sL~~L~l~~c~~l~~lp~- 79 (131)
|..+..+ +|++|+++++ .+..++.. + +.+++|++|++++| .+.. +|..++.+++|++|++.+|..++.+|.
T Consensus 67 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 142 (549)
T 2z81_A 67 GDAFYSLGSLEHLDLSDN-HLSSLSSSWF--GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142 (549)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCSCCHHHH--TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred hhhccccccCCEEECCCC-ccCccCHHHh--ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHh
Confidence 4668888 9999999987 46677755 6 89999999999998 5654 456788999999999999877777874
Q ss_pred CCCCCCCcCeEeecCCc
Q 045942 80 DMHHVTTLKSLAIAECP 96 (131)
Q Consensus 80 ~~~~l~~L~~L~i~~~~ 96 (131)
.+..+++|++|++.++.
T Consensus 143 ~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 143 DFAGLTSLNELEIKALS 159 (549)
T ss_dssp TTTTCCEEEEEEEEETT
T ss_pred hhhcccccCeeeccCCc
Confidence 68888999999998765
No 68
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.83 E-value=1.3e-09 Score=85.60 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCCCCC--CC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcc--cCCCCCCCc------cccccccccccc
Q 045942 4 HDRKNT--RP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFM--ALPGSLKDL------EALETLVIARCP 72 (131)
Q Consensus 4 ~~~~i~--~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l------~sL~~L~l~~c~ 72 (131)
.|+.++ ++ +|++|++++|.....+|..+ +.+++|+.|++++|..+. .+|..++.+ ++|++|++.+|.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL--KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT--TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH--hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 678888 88 99999999887778888888 888999999999885354 477766665 888888888764
Q ss_pred ccCcCCC--CCCCCCCcCeEeecCCc
Q 045942 73 KLSSLPE--DMHHVTTLKSLAIAECP 96 (131)
Q Consensus 73 ~l~~lp~--~~~~l~~L~~L~i~~~~ 96 (131)
+..+|. .+..+++|++|++.++.
T Consensus 317 -l~~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 317 -LKTFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp -CSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred -CCccCchhhhccCCCCCEEeCcCCc
Confidence 557887 77888888888887764
No 69
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.82 E-value=1.8e-08 Score=68.04 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=72.8
Q ss_pred CCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-
Q 045942 4 HDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED- 80 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~- 80 (131)
.|..+..+ +|++|+++++ .+..++...+ ..+++|+.|+++++ .+..++. .+..+++|+.|+++++ .+..+|..
T Consensus 46 ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~ 121 (193)
T 2wfh_A 46 VPKELSNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGA 121 (193)
T ss_dssp CCGGGGGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTT
T ss_pred hHHHhhcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhh
Confidence 34567777 9999999986 5777875433 88999999999998 6777764 6889999999999986 57788775
Q ss_pred CCCCCCcCeEeecCCc
Q 045942 81 MHHVTTLKSLAIAECP 96 (131)
Q Consensus 81 ~~~l~~L~~L~i~~~~ 96 (131)
+..+++|+.|++.+++
T Consensus 122 ~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 122 FNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hhcCccccEEEeCCCC
Confidence 7789999999998765
No 70
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.82 E-value=2.8e-09 Score=68.78 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCCCCCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCccc-CCCCCCCcccccccccccccccCcCC--
Q 045942 3 HHDRKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMA-LPGSLKDLEALETLVIARCPKLSSLP-- 78 (131)
Q Consensus 3 ~~~~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~-lp~~l~~l~sL~~L~l~~c~~l~~lp-- 78 (131)
..|..+..+ +|++|++++| .+..+ ..+ ..+++|+.|++++| .+.. +|..++.+++|++|++++|. +..+|
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~--~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~ 106 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINV-GLTSI-ANL--PKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTI 106 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTS-CCCCC-TTC--CCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHH
T ss_pred HHHHHHhhcCCCcEEECcCC-CCCCc-hhh--hcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCc-CCChHHH
Confidence 345667788 9999999987 57677 556 78999999999999 5555 77667779999999999875 66654
Q ss_pred CCCCCCCCcCeEeecCCc
Q 045942 79 EDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 79 ~~~~~l~~L~~L~i~~~~ 96 (131)
..+..+++|++|++.+|+
T Consensus 107 ~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 107 EPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp GGGGGCTTCCEEECTTCG
T ss_pred HHHhhCCCCCEEeCcCCc
Confidence 678889999999999985
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.82 E-value=2e-08 Score=75.88 Aligned_cols=84 Identities=21% Similarity=0.297 Sum_probs=38.0
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCC-CCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPE-DMHH 83 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~ 83 (131)
.+..+ +|++|++++|..+..+|... ....+|+.|++++| .+..+| ..+..+++|+.|+++++. +..++. .+..
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 270 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHE 270 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTT
T ss_pred hcccCcccceeeCCCCccccccCccc--ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhhccc
Confidence 34445 56666666555555554433 23334555555544 344444 123444555555554432 222222 2344
Q ss_pred CCCcCeEeecC
Q 045942 84 VTTLKSLAIAE 94 (131)
Q Consensus 84 l~~L~~L~i~~ 94 (131)
+++|++|++.+
T Consensus 271 l~~L~~L~L~~ 281 (477)
T 2id5_A 271 LLRLQEIQLVG 281 (477)
T ss_dssp CTTCCEEECCS
T ss_pred cccCCEEECCC
Confidence 44444444443
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.82 E-value=1.4e-08 Score=79.68 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=46.7
Q ss_pred CCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCC-CCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLP-EDMHH 83 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp-~~~~~ 83 (131)
+.++ +|++|+++++. +..++ ..+ +.+++|+.|+++++ .+..+|. .++.+++|++|++++|. +..++ ..+..
T Consensus 45 ~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 119 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNT-ISKLEPELC--QKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVK 119 (680)
T ss_dssp GGGGTTCSEEECCSSC-CCCCCTTHH--HHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTT
T ss_pred HhCCCcCcEEECCCCc-cCccCHHHH--hcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccc
Confidence 3444 55555555542 33332 333 45666666666665 4555554 36666666666666653 44444 34666
Q ss_pred CCCcCeEeecCCc
Q 045942 84 VTTLKSLAIAECP 96 (131)
Q Consensus 84 l~~L~~L~i~~~~ 96 (131)
+++|++|++.+|.
T Consensus 120 l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 120 QKNLITLDLSHNG 132 (680)
T ss_dssp CTTCCEEECCSSC
T ss_pred cCCCCEEECCCCc
Confidence 6666777666553
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=2e-08 Score=81.83 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=46.1
Q ss_pred ccceEeecCcCCCcccchhhhcc--CCCCcCEEeecCCCCcccCCCCCCCccccccccccc------ccccCcCCCCCCC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQC--CTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR------CPKLSSLPEDMHH 83 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~--~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~------c~~l~~lp~~~~~ 83 (131)
+|++|++++| .+..+|..+ . .+++|+.|++++| .+..+|..++.+++|+.|++++ |...+.+|..+..
T Consensus 729 ~L~~L~Ls~N-~L~~lp~~l--~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~ 804 (876)
T 4ecn_A 729 LLTTIDLRFN-KLTSLSDDF--RATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804 (876)
T ss_dssp GCCEEECCSS-CCCCCCGGG--STTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred CccEEECCCC-CCccchHHh--hhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence 5566666554 344555555 4 5566666666665 4444565556666666666644 3334455555666
Q ss_pred CCCcCeEeecCCc
Q 045942 84 VTTLKSLAIAECP 96 (131)
Q Consensus 84 l~~L~~L~i~~~~ 96 (131)
+++|+.|++.+|.
T Consensus 805 L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 805 CPSLIQLQIGSND 817 (876)
T ss_dssp CSSCCEEECCSSC
T ss_pred CCCCCEEECCCCC
Confidence 6666666666554
No 74
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.79 E-value=4.3e-08 Score=75.95 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=43.3
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-CCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED-MHH 83 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~ 83 (131)
.+..+ +|++|+++++ .+..+|.++ ..+++|+.|++++| .+..+ |..+..+++|++|++.+|.....+|.. +..
T Consensus 273 ~~~~l~~L~~L~l~~n-~l~~lp~~l--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 273 TFHCFSGLQELDLTAT-HLSELPSGL--VGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp TTTTCTTCSEEECTTS-CCSCCCSSC--CSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred HhccccCCCEEeccCC-ccCCCChhh--cccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 35556 6777777665 455666666 56666666666666 33333 334455555555555554333233322 333
Q ss_pred CCCcCeEeec
Q 045942 84 VTTLKSLAIA 93 (131)
Q Consensus 84 l~~L~~L~i~ 93 (131)
+++|++|++.
T Consensus 349 l~~L~~L~l~ 358 (606)
T 3t6q_A 349 LENLRELDLS 358 (606)
T ss_dssp CTTCCEEECC
T ss_pred cCcCCEEECC
Confidence 4444444443
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.79 E-value=6.7e-08 Score=71.27 Aligned_cols=106 Identities=19% Similarity=0.321 Sum_probs=65.4
Q ss_pred ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCC-CCCCCCcC
Q 045942 12 HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPED-MHHVTTLK 88 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~ 88 (131)
+|++|+++++ .+..++. .+ ..+++|+.|+++++ .+..+| ..++.+++|++|++.+| .+..+|.. +..+++|+
T Consensus 70 ~L~~L~L~~n-~i~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 70 QVELLNLNDL-QIEEIDTYAF--AYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp CCSEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCcEEECCCC-cccccChhhc--cCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCc
Confidence 6677777665 3555553 34 66777777777776 455554 44677777777777765 46667765 36677788
Q ss_pred eEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 89 SLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 89 ~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
+|++.++.--. .....+..+++++.+.+.++.+.
T Consensus 145 ~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 145 TLSMSNNNLER-----IEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp EEECCSSCCCB-----CCTTTTSSCTTCCEEECCSSCCS
T ss_pred EEECCCCccCc-----cChhhccCCCCCCEEECCCCcCC
Confidence 88777664211 11223455666677776666554
No 76
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.79 E-value=2.6e-08 Score=72.17 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
+..+ +|++|++++| .+..++. + ..+++|++|++++| .+..+| .+..+++|++|++.+|. +..++. +..+++
T Consensus 62 ~~~~~~L~~L~l~~n-~i~~~~~-~--~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~ 133 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGN-QITDISP-L--SNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTK 133 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTT
T ss_pred hhhcCCccEEEccCC-ccccchh-h--hcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCc
Confidence 4455 7777777776 4666665 4 67777777777777 566664 46677777777777653 555554 566677
Q ss_pred cCeEeecCCc
Q 045942 87 LKSLAIAECP 96 (131)
Q Consensus 87 L~~L~i~~~~ 96 (131)
|++|++.+|.
T Consensus 134 L~~L~l~~n~ 143 (347)
T 4fmz_A 134 MYSLNLGANH 143 (347)
T ss_dssp CCEEECTTCT
T ss_pred eeEEECCCCC
Confidence 7777777664
No 77
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.78 E-value=6e-08 Score=64.17 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=62.7
Q ss_pred ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCCC-CCCcccccccccccccccCcCCCC-CCCCCCcC
Q 045942 12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCPKLSSLPED-MHHVTTLK 88 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~ 88 (131)
+|++|+++++ .+..++ ..+ ..+++|+.|+++++ .+..+|.. +..+++|++|+++++ .+..+|.. +..+++|+
T Consensus 31 ~l~~L~L~~N-~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 31 TTQVLYLYDN-QITKLEPGVF--DRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp TCSEEECCSS-CCCCCCTTTT--TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCcEEEcCCC-cCCccChhhh--cCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCC
Confidence 7888999875 566775 445 78889999999988 67777754 578899999999875 57777764 77888999
Q ss_pred eEeecCCc
Q 045942 89 SLAIAECP 96 (131)
Q Consensus 89 ~L~i~~~~ 96 (131)
.|++.+++
T Consensus 106 ~L~L~~N~ 113 (170)
T 3g39_A 106 HIWLLNNP 113 (170)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 99988764
No 78
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.77 E-value=7.5e-08 Score=63.71 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=81.6
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~ 89 (131)
..+++++++. .+..+|..+ .++|+.|+++++ .+..+ |..+..+++|++|+++++ .+..+|.. +..+++|++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~----~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGI----PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEeCCC-CcCccCccC----CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCE
Confidence 5688999874 688899765 388999999998 67777 566889999999999986 57888876 578999999
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
|++.++.- . ......+..+.+++.+.+.+|.+.
T Consensus 83 L~L~~N~l-~----~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQL-K----SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCC-C----CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCcc-C----EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99998752 2 112234667888999999988764
No 79
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.76 E-value=6.2e-08 Score=71.10 Aligned_cols=81 Identities=14% Similarity=0.111 Sum_probs=66.9
Q ss_pred ccceEeecCcCCCcccchhhhcc-CCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCC-CCCCCCCcC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQC-CTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPE-DMHHVTTLK 88 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~-~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L~ 88 (131)
.++.|+++++ .+..++...+ . .+++|+.|+++++ .+..++ ..+..+++|++|+++++ .+..++. .+..+++|+
T Consensus 40 ~l~~L~Ls~N-~l~~l~~~~~-~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 40 YTALLDLSHN-NLSRLRAEWT-PTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TCSEEECCSS-CCCEECTTSS-SSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCC-CCCccChhhh-hhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCC
Confidence 6899999886 6788876543 4 8899999999998 677776 45889999999999986 4777766 478899999
Q ss_pred eEeecCCc
Q 045942 89 SLAIAECP 96 (131)
Q Consensus 89 ~L~i~~~~ 96 (131)
.|++.++.
T Consensus 116 ~L~L~~N~ 123 (361)
T 2xot_A 116 VLLLYNNH 123 (361)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 99998875
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=5.6e-09 Score=84.99 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=63.2
Q ss_pred CCCCCC--CC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcc--cCCCCCCCcc-------cccccccccc
Q 045942 4 HDRKNT--RP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFM--ALPGSLKDLE-------ALETLVIARC 71 (131)
Q Consensus 4 ~~~~i~--~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l~-------sL~~L~l~~c 71 (131)
.|+.++ ++ +|++|++++|.....+|..+ +.+++|+.|++++|..+. .+|..++.++ +|+.|++++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGG--GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHH--hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 577777 78 89999998887777888777 788888888888875244 3665444443 7777777665
Q ss_pred cccCcCCC--CCCCCCCcCeEeecCCc
Q 045942 72 PKLSSLPE--DMHHVTTLKSLAIAECP 96 (131)
Q Consensus 72 ~~l~~lp~--~~~~l~~L~~L~i~~~~ 96 (131)
. +..+|. .+.++++|+.|++.++.
T Consensus 559 ~-L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 559 N-LEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp C-CCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred c-CCccCChhhhhcCCCCCEEECCCCC
Confidence 3 446666 66666677777766553
No 81
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.76 E-value=1.2e-08 Score=67.61 Aligned_cols=106 Identities=11% Similarity=0.165 Sum_probs=60.5
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCC-CCCCCcCeE
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDM-HHVTTLKSL 90 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~-~~l~~L~~L 90 (131)
+|++|+++++ .+..+|... ...++|+.|+++++ .+..+ ..+..+++|+.|++++| .+..+|..+ ..+++|++|
T Consensus 20 ~L~~L~l~~n-~l~~i~~~~--~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 20 RDRELDLRGY-KIPVIENLG--ATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp SCEEEECTTS-CCCSCCCGG--GGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEE
T ss_pred CceEEEeeCC-CCchhHHhh--hcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEE
Confidence 6777777765 455665422 23347777777776 55555 45666777777777665 455666554 566677777
Q ss_pred eecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 91 AIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 91 ~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
++.++.- .. . +....+..+.++..+.+.++.+.
T Consensus 94 ~L~~N~i-~~-~--~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 94 ILTNNSL-VE-L--GDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ECCSCCC-CC-G--GGGGGGGGCTTCCEEECCSSGGG
T ss_pred ECCCCcC-Cc-c--hhhHhhhcCCCCCEEEecCCCCC
Confidence 7766542 10 0 00012334555666666666543
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.75 E-value=3.8e-08 Score=70.87 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=45.6
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
+..+ +|++|++++| .+..++. + ..+++|+.|++++| .+..++ .+..+++|++|++++|. +..++. +..+++
T Consensus 59 ~~~l~~L~~L~L~~n-~i~~~~~-~--~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~ 130 (308)
T 1h6u_A 59 VQYLNNLIGLELKDN-QITDLAP-L--KNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSN 130 (308)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-G--TTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTT
T ss_pred hhccCCCCEEEccCC-cCCCChh-H--ccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCC
Confidence 4445 6666666665 3555555 4 56666666666666 355554 35556666666666543 444443 455556
Q ss_pred cCeEeecCC
Q 045942 87 LKSLAIAEC 95 (131)
Q Consensus 87 L~~L~i~~~ 95 (131)
|++|++.+|
T Consensus 131 L~~L~l~~n 139 (308)
T 1h6u_A 131 LQVLYLDLN 139 (308)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 666665554
No 83
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.75 E-value=2.3e-08 Score=76.74 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=53.8
Q ss_pred cCCCCcCEEeecCCCCcccCCCCCCCccccccccccccccc-CcCCCCCCCCCCcCeEeecCCchhhhhcCCCCCCCCCc
Q 045942 34 CCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKL-SSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPK 112 (131)
Q Consensus 34 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l-~~lp~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~ 112 (131)
..+++|+.|++++|......|..+..+++|+.|++.+|... ..+|..+..+++|++|++.+|..-. .....+..
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~ 492 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-----LSPTAFNS 492 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-----ECTTTTTT
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc-----CChhhhhc
Confidence 45566666666666333334455666667777777666533 3466666667777777776664211 11233456
Q ss_pred ccCCCeeEecCcccCC
Q 045942 113 IAHIPEILLDDKMIKS 128 (131)
Q Consensus 113 i~~l~~l~~~~~~~~~ 128 (131)
+.+++.+.+.++.+..
T Consensus 493 l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 493 LSSLQVLNMASNQLKS 508 (570)
T ss_dssp CTTCCEEECCSSCCSC
T ss_pred ccCCCEEeCCCCcCCC
Confidence 7778888888877654
No 84
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.74 E-value=3.8e-09 Score=70.11 Aligned_cols=80 Identities=16% Similarity=0.283 Sum_probs=63.5
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCC-CCcccccccccccccccCcCCC--CCCCCCCcC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSL-KDLEALETLVIARCPKLSSLPE--DMHHVTTLK 88 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l-~~l~sL~~L~l~~c~~l~~lp~--~~~~l~~L~ 88 (131)
+|++|+++++ .+..+ ..+ ..+++|+.|+++++ .+..+|..+ ..+++|++|++++| .+..+|. .+..+++|+
T Consensus 43 ~L~~L~Ls~N-~l~~~-~~l--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDN-EIRKL-DGF--PLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSS-CCCEE-CCC--CCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCC
T ss_pred CCCEEECCCC-CCCcc-ccc--ccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCC
Confidence 7889999886 46666 456 78889999999988 677787655 78889999999886 4677776 677888899
Q ss_pred eEeecCCch
Q 045942 89 SLAIAECPA 97 (131)
Q Consensus 89 ~L~i~~~~~ 97 (131)
.|++.+++-
T Consensus 117 ~L~l~~N~i 125 (176)
T 1a9n_A 117 YLCILRNPV 125 (176)
T ss_dssp EEECCSSGG
T ss_pred EEEecCCCC
Confidence 999988863
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.74 E-value=4.6e-08 Score=70.40 Aligned_cols=57 Identities=9% Similarity=0.157 Sum_probs=25.9
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCccccccccccc
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR 70 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~ 70 (131)
+..+ +|++|+++++. +..++ .+ ..+++|+.|++++| .+..++. +..+++|++|++++
T Consensus 81 ~~~l~~L~~L~L~~n~-l~~~~-~~--~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 81 LKNLTKITELELSGNP-LKNVS-AI--AGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDL 138 (308)
T ss_dssp GTTCCSCCEEECCSCC-CSCCG-GG--TTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred HccCCCCCEEEccCCc-CCCch-hh--cCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCC
Confidence 3444 55555555542 44443 23 44555555555554 3333332 34444444444443
No 86
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=1.1e-07 Score=63.12 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=80.7
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~ 89 (131)
.-+.+++++. .+..+|..+ . ++|+.|+++++ .+..+ |..++.+++|+.|+++++ .+..+|.. +..+++|+.
T Consensus 13 ~~~~l~~~~n-~l~~iP~~~--~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 13 DQTLVNCQNI-RLASVPAGI--P--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp CSSEEECCSS-CCSSCCSCC--C--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCcEEEeCCC-CCCccCCCc--C--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhE
Confidence 4467888774 688999866 3 89999999998 67777 567889999999999986 68888876 578999999
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
|++.++.-- ......+..+.+++.+.+.++.+.
T Consensus 86 L~L~~N~l~-----~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDNHLK-----SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCCccc-----eeCHHHhccccCCCEEEeCCCCcc
Confidence 999987421 111223567888899999888765
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.74 E-value=8.1e-08 Score=77.57 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=86.8
Q ss_pred ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~ 89 (131)
++++|+++++. +..+ |..+ ..+++|+.|++++|.....+ |..++++++|++|++++|......|..+..+++|++
T Consensus 25 ~l~~LdLs~N~-i~~i~~~~~--~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 25 TTERLLLSFNY-IRTVTASSF--PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp TCCEEEEESCC-CCEECSSSC--SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CcCEEECCCCc-CCccChhHC--cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 89999999874 6666 4566 89999999999999777777 577999999999999997644445888999999999
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 128 (131)
|++.+|.... .. .....+..+++++.+.+.++.+.+
T Consensus 102 L~Ls~n~l~~-~~--~~~~~~~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 102 LRLYFCGLSD-AV--LKDGYFRNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp EECTTCCCSS-CC--STTCCCSSCSSCCEEEEESCCCCC
T ss_pred eeCcCCCCCc-cc--ccCccccccCCCCEEECCCCcccc
Confidence 9999885321 00 112235678899999998887754
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.73 E-value=8.9e-08 Score=67.48 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=87.0
Q ss_pred CCCCCC-ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCC-CC
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPE-DM 81 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~-~~ 81 (131)
..+.++ +|++|+++++ .+..++. .+ ..+++|+.|+++++ .+..++ ..+..+++|++|++.++. +..++. .+
T Consensus 46 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 120 (276)
T 2z62_A 46 YSFFSFPELQVLDLSRC-EIQTIEDGAY--QSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPI 120 (276)
T ss_dssp TTTTTCTTCSEEECTTC-CCCEECTTTT--TTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCC
T ss_pred hHhccccCCcEEECCCC-cCCccCHHHc--cCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCC-ccccCchhc
Confidence 367778 9999999987 5777775 45 78999999999998 566665 568899999999998864 555655 68
Q ss_pred CCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccCC
Q 045942 82 HHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIKS 128 (131)
Q Consensus 82 ~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 128 (131)
..+++|++|++.++.--. . .....+..+.+++.+.+.++.+..
T Consensus 121 ~~l~~L~~L~l~~n~l~~--~--~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQS--F--KLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTCTTCCEEECCSSCCCC--C--CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ccCCCCCEEECcCCccce--e--cCchhhccCCCCCEEECCCCCCCc
Confidence 889999999999875211 0 112345667889999998887654
No 89
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.73 E-value=8e-09 Score=78.74 Aligned_cols=78 Identities=22% Similarity=0.137 Sum_probs=42.0
Q ss_pred ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~ 89 (131)
+|++|+++++. +..++ ..+ ..+++|++|++++| .+..+ |..++.+++|++|+++++ .+..+|.. .+++|++
T Consensus 22 ~L~~L~Ls~n~-i~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 22 KTTILNISQNY-ISELWTSDI--LSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKH 94 (520)
T ss_dssp TCSEEECCSSC-CCCCCHHHH--TTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSE
T ss_pred cccEEECCCCc-ccccChhhc--cccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccE
Confidence 56666666543 44444 334 55666666666665 34433 445555666666666554 34455544 4555666
Q ss_pred EeecCCc
Q 045942 90 LAIAECP 96 (131)
Q Consensus 90 L~i~~~~ 96 (131)
|++.+|.
T Consensus 95 L~L~~N~ 101 (520)
T 2z7x_B 95 LDLSFNA 101 (520)
T ss_dssp EECCSSC
T ss_pred EeccCCc
Confidence 6555543
No 90
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.73 E-value=6.4e-08 Score=69.85 Aligned_cols=77 Identities=25% Similarity=0.400 Sum_probs=42.7
Q ss_pred ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~ 89 (131)
++++|+++++ .+..++. .+ ..+++|++|+++++ .+..+ |..++.+++|++|+++++ .+..+|..+. ++|++
T Consensus 53 ~l~~L~L~~n-~i~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 53 DTALLDLQNN-KITEIKDGDF--KNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQE 125 (330)
T ss_dssp TCCEEECCSS-CCCCBCTTTT--TTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCE
T ss_pred CCeEEECCCC-cCCEeChhhh--ccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccE
Confidence 5666666664 3555554 33 56666666666666 34444 455666666666666654 3445554433 34555
Q ss_pred EeecCC
Q 045942 90 LAIAEC 95 (131)
Q Consensus 90 L~i~~~ 95 (131)
|++.++
T Consensus 126 L~l~~n 131 (330)
T 1xku_A 126 LRVHEN 131 (330)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 544433
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.72 E-value=1.2e-07 Score=68.46 Aligned_cols=83 Identities=17% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCCCC-ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCC-CCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPED-MHH 83 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~ 83 (131)
.+.++ +|++|+++++. +..+ |..+ ..+++|+.|+++++ .+..+|..+. ++|++|++.++ .+..+|.. +..
T Consensus 73 ~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~ 145 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNK-ISKIHEKAF--SPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSG 145 (332)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECGGGS--TTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSS
T ss_pred HhhCCCCCcEEECCCCc-cCccCHhHh--hCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCC
Confidence 34444 55555554432 3333 2333 44555555555544 3444444333 45555555443 23344432 455
Q ss_pred CCCcCeEeecCCc
Q 045942 84 VTTLKSLAIAECP 96 (131)
Q Consensus 84 l~~L~~L~i~~~~ 96 (131)
+++|++|++.++.
T Consensus 146 l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 146 LRNMNCIEMGGNP 158 (332)
T ss_dssp CSSCCEEECCSCC
T ss_pred CccCCEEECCCCc
Confidence 5566666655543
No 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.72 E-value=5.9e-08 Score=73.95 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=21.4
Q ss_pred CCCCCCC-ccceEeecCcCCCc---ccchhhhccCCCCcCEEeecCC
Q 045942 5 DRKNTRP-HLRRVVIGEITQFL---ELPQWLLQCCTDTLQSLIIVDC 47 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~---~lp~~~~~~~l~~L~~L~l~~~ 47 (131)
|..+..+ +|++|+++++. +. .+|..+ +.+++|+.|++++|
T Consensus 341 ~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~--~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 341 FENCGHLTELETLILQMNQ-LKELSKIAEMT--TQMKSLQQLDISQN 384 (520)
T ss_dssp TTTCCCCSSCCEEECCSSC-CCBHHHHHHHH--TTCTTCCEEECCSS
T ss_pred hhhhccCCCCCEEEccCCc-cCccccchHHH--hhCCCCCEEECCCC
Confidence 4445555 66666665543 33 233344 55666666666665
No 93
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.72 E-value=6.3e-08 Score=70.16 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=61.5
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
+..+ +|++|++++| .+..++ .+ ..+++|++|++++| .+..++. +..+++|+.|++.+|..+..++. +..+++
T Consensus 84 ~~~l~~L~~L~L~~n-~i~~~~-~~--~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~ 156 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTN-KITDIS-AL--QNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTG 156 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCCG-GG--TTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTT
T ss_pred hhcCCcCCEEEccCC-cccCch-HH--cCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccc-hhhCCC
Confidence 6667 8999999887 566665 45 78888999999888 5666765 77788888888888876665544 666777
Q ss_pred cCeEeecCCc
Q 045942 87 LKSLAIAECP 96 (131)
Q Consensus 87 L~~L~i~~~~ 96 (131)
|++|++.+|.
T Consensus 157 L~~L~l~~~~ 166 (347)
T 4fmz_A 157 LNYLTVTESK 166 (347)
T ss_dssp CCEEECCSSC
T ss_pred CcEEEecCCC
Confidence 8888777664
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.71 E-value=5.1e-08 Score=75.19 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=43.6
Q ss_pred ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccC-CCCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMAL-PGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~ 89 (131)
+|++|+++++ .+..++ ..+ ..+++|+.|++++| .+..+ |..+..+++|++|+++++ .+..+|.. .+++|++
T Consensus 53 ~L~~L~Ls~N-~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 53 RTKALSLSQN-SISELRMPDI--SFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRH 125 (562)
T ss_dssp TCCEEECCSS-CCCCCCGGGT--TTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSE
T ss_pred CcCEEECCCC-CccccChhhh--ccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCE
Confidence 5666666654 344454 334 56666666666666 44444 344556666666666554 34555554 4556666
Q ss_pred EeecCCc
Q 045942 90 LAIAECP 96 (131)
Q Consensus 90 L~i~~~~ 96 (131)
|++.++.
T Consensus 126 L~Ls~N~ 132 (562)
T 3a79_B 126 LDLSFND 132 (562)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 6665543
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.68 E-value=9.7e-08 Score=73.64 Aligned_cols=114 Identities=12% Similarity=0.134 Sum_probs=69.3
Q ss_pred CCCCCCCC-ccceEeecCcCCCcccc---hhhhccCCCCcCEEeecCCCCccc-CCCC-CCCc-----------------
Q 045942 4 HDRKNTRP-HLRRVVIGEITQFLELP---QWLLQCCTDTLQSLIIVDCPNFMA-LPGS-LKDL----------------- 60 (131)
Q Consensus 4 ~~~~i~~l-~L~~L~i~~c~~l~~lp---~~~~~~~l~~L~~L~l~~~~~l~~-lp~~-l~~l----------------- 60 (131)
.|..+..+ +|++|+++++ .+..++ ..+ ..+++|+.|+++++. +.. +|.. +..+
T Consensus 369 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~--~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRN-GLKNFFKVALMT--KNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp TTTTCCSCSSCCEEECCSS-CCCBTTHHHHTT--TTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred hhhhhcccCCCCEEECCCC-CcCCcccchhhh--cCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 35566777 8888888775 455444 345 677788888888773 443 5532 3333
Q ss_pred -----ccccccccccccccCcCCCCCCCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 61 -----EALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 61 -----~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
++|+.|++++| .++.+|..+..+++|++|++.++.-- . . ....+..+.+++.+.+.++.+.
T Consensus 445 ~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~-l---~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 445 FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-S-V---PDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-C-C---CTTSTTTCTTCCCEECCSCCBC
T ss_pred hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-C-C---CHHHHhcCCCCCEEEecCCCcC
Confidence 45566666554 45567776667777777777766421 1 1 1112455667777777777654
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.67 E-value=9.9e-08 Score=68.98 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=28.1
Q ss_pred CCCC-ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccc
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARC 71 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c 71 (131)
+..+ +|++|+++++ .+..++. .+ ..+++|+.|++++| .+..+|..+..+++|+.|+++++
T Consensus 213 l~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHN-QIRMIENGSL--SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp STTCTTCSCCBCCSS-CCCCCCTTGG--GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCC-cCCcCChhHh--hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence 3444 4555555443 2333332 23 44455555555554 34455544555555555555443
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.67 E-value=6.4e-08 Score=69.18 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=40.3
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
+..+ +|++|+++++ .+..++. + ..+++|+.|+++++ .+..+|. +..+++|++|++++| .+..+ ..+..+++
T Consensus 64 ~~~l~~L~~L~L~~n-~l~~~~~-l--~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n-~i~~~-~~l~~l~~ 135 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGN-KLTDIKP-L--ANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHN-GISDI-NGLVHLPQ 135 (291)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTS-CCCCC-GGGGGCTT
T ss_pred HhcCCCCCEEEccCC-ccCCCcc-c--ccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCC-cCCCC-hhhcCCCC
Confidence 3444 5666666554 3444444 4 55566666666655 3444432 555555555555554 23333 23344455
Q ss_pred cCeEeecCC
Q 045942 87 LKSLAIAEC 95 (131)
Q Consensus 87 L~~L~i~~~ 95 (131)
|+.|++.+|
T Consensus 136 L~~L~l~~n 144 (291)
T 1h6t_A 136 LESLYLGNN 144 (291)
T ss_dssp CCEEECCSS
T ss_pred CCEEEccCC
Confidence 555555444
No 98
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.66 E-value=2.3e-07 Score=72.27 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=72.0
Q ss_pred CC-ccceEeecCcCCCcccch-hhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCC
Q 045942 10 RP-HLRRVVIGEITQFLELPQ-WLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVT 85 (131)
Q Consensus 10 ~l-~L~~L~i~~c~~l~~lp~-~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~ 85 (131)
.+ +|++|+++++ .+..++. .+ ..+++|+.|++++| .+..+|. .++.+++|++|++++| .+..+|.. +..++
T Consensus 73 ~l~~L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 73 SFRQVELLNLNDL-QIEEIDTYAF--AYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTP 147 (597)
T ss_dssp HCCCCSEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred cCCCCcEEECCCC-CCCCCChHHh--cCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCC
Confidence 34 6777878775 3555654 45 67788888888887 4555553 4678888888888876 46677766 47788
Q ss_pred CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
+|++|++.+|.--. .....+..+.++..+.+.++.+.
T Consensus 148 ~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 148 KLTTLSMSNNNLER-----IEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp TCCEEECCSSCCCB-----CCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCEEEeeCCcCCC-----CChhhhhcCCcCcEEECcCCCCC
Confidence 88888888764211 11223455666777777666554
No 99
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.66 E-value=2.2e-07 Score=67.04 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=53.9
Q ss_pred ccceEeecCcCCCccc-chhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCCCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLEL-PQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~l-p~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~ 89 (131)
+|++|+++++. +..+ |..+ ..+++|+.|+++++ .+..++ ..+..+++|+.|++++| .+..+|..+..+++|++
T Consensus 193 ~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 193 SLTELHLDGNK-ITKVDAASL--KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQV 267 (330)
T ss_dssp TCSEEECTTSC-CCEECTGGG--TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCE
T ss_pred cCCEEECCCCc-CCccCHHHh--cCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCE
Confidence 45555555442 3334 3444 67777888888777 455554 35777788888888776 46678888888888888
Q ss_pred EeecCCc
Q 045942 90 LAIAECP 96 (131)
Q Consensus 90 L~i~~~~ 96 (131)
|++.++.
T Consensus 268 L~l~~N~ 274 (330)
T 1xku_A 268 VYLHNNN 274 (330)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 8887765
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=1.4e-07 Score=66.58 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=31.8
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
+|++|+++++ .+..++. + ..+++|+.|+++++ .+..+|... . ++|+.|++++| .+..++ .+..+++|+.|+
T Consensus 64 ~L~~L~L~~N-~i~~~~~-l--~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 64 NLKELHLSHN-QISDLSP-L--KDLTKLEELSVNRN-RLKNLNGIP-S-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILS 134 (263)
T ss_dssp TCCEEECCSS-CCCCCGG-G--TTCSSCCEEECCSS-CCSCCTTCC-C-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEE
T ss_pred CCCEEECCCC-ccCCChh-h--ccCCCCCEEECCCC-ccCCcCccc-c-CcccEEEccCC-ccCCCh-hhcCcccccEEE
Confidence 4555555443 3444443 3 44555555555544 344343211 1 44444444433 233332 233444455554
Q ss_pred ecCC
Q 045942 92 IAEC 95 (131)
Q Consensus 92 i~~~ 95 (131)
+.++
T Consensus 135 Ls~N 138 (263)
T 1xeu_A 135 IRNN 138 (263)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 4443
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=1.2e-07 Score=66.85 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=65.8
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
+..+ +|++|+++++ .+..+| ++ ..+++|+.|++++| .+..+|. +..+++|+.|++++| .+..+|.... ++
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~-~l--~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA-GM--QFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--AC 107 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT-TG--GGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SS
T ss_pred hhhcCcCcEEECcCC-Ccccch-HH--hhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--Cc
Confidence 3345 8999999987 577887 56 78999999999998 6888876 889999999999986 5777776444 79
Q ss_pred cCeEeecCCc
Q 045942 87 LKSLAIAECP 96 (131)
Q Consensus 87 L~~L~i~~~~ 96 (131)
|++|++.+|.
T Consensus 108 L~~L~L~~N~ 117 (263)
T 1xeu_A 108 LSRLFLDNNE 117 (263)
T ss_dssp CCEEECCSSC
T ss_pred ccEEEccCCc
Confidence 9999998874
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.66 E-value=2.9e-08 Score=71.53 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=67.2
Q ss_pred CCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHV 84 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l 84 (131)
.+..+ +|++|+++++ .+..++ ..+. ..+++|+.|++++| .+..+|. ...+++|++|++++| .+..+|..+..+
T Consensus 139 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l 213 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLN-EIDTVNFAELA-ASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSA 213 (317)
T ss_dssp CTGGGSSEEEEECTTS-CCCEEEGGGGG-GGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGG
T ss_pred hhhccCCCCEEECCCC-CCCcccHHHHh-hccCcCCEEECCCC-cCccccc-ccccccCCEEECCCC-cCCcchhhhccc
Confidence 34445 6777777665 344443 3221 35677777777776 4555543 334777777777765 466676667777
Q ss_pred CCcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 85 TTLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 85 ~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
++|+.|++.++.- .. . ...+..+.+++.+.+.++.+.
T Consensus 214 ~~L~~L~L~~N~l-~~-l----~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 214 AGVTWISLRNNKL-VL-I----EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCSEEECTTSCC-CE-E----CTTCCCCTTCCEEECTTCCCB
T ss_pred CcccEEECcCCcc-cc-h----hhHhhcCCCCCEEEccCCCcc
Confidence 7788888777642 11 1 223455677788888777664
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.66 E-value=9.9e-08 Score=68.48 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=40.9
Q ss_pred CCCcCEEeecCCCCcccC-CCCCCCc---ccccccccccccccCcCCCCCCCCCCcCeEeecCCchhhhhcCCCCCCCCC
Q 045942 36 TDTLQSLIIVDCPNFMAL-PGSLKDL---EALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWP 111 (131)
Q Consensus 36 l~~L~~L~l~~~~~l~~l-p~~l~~l---~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~ 111 (131)
+++|+.|+++++ .+..+ |..++.+ ++|++|++++| .++.+|..+. ++|++|+++++.--. -....
T Consensus 223 l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~l~~-------~~~~~ 291 (310)
T 4glp_A 223 GVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNRLNR-------APQPD 291 (310)
T ss_dssp TCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCCCCS-------CCCTT
T ss_pred CCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCcCCC-------Cchhh
Confidence 344555555544 23322 4334333 35555555543 3445555443 455555555543110 01134
Q ss_pred cccCCCeeEecCcccCCC
Q 045942 112 KIAHIPEILLDDKMIKSS 129 (131)
Q Consensus 112 ~i~~l~~l~~~~~~~~~~ 129 (131)
.+++++.+.+.+|.+...
T Consensus 292 ~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 292 ELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp SCCCCSCEECSSTTTSCC
T ss_pred hCCCccEEECcCCCCCCC
Confidence 456777788888877654
No 104
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.64 E-value=2.3e-08 Score=71.96 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=36.7
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCc-----ccccccccccccccCcCC-CCCCCCC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDL-----EALETLVIARCPKLSSLP-EDMHHVT 85 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l-----~sL~~L~l~~c~~l~~lp-~~~~~l~ 85 (131)
+|++|+++++.-...+|..++...+++|+.|+++++ .+..+|..++.+ ++|++|++++|. +..++ ..+..++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFP 173 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCC
Confidence 455555555432223443210024455555555554 333334333333 455555555443 23332 3444555
Q ss_pred CcCeEeecCCc
Q 045942 86 TLKSLAIAECP 96 (131)
Q Consensus 86 ~L~~L~i~~~~ 96 (131)
+|++|++.++.
T Consensus 174 ~L~~L~Ls~N~ 184 (312)
T 1wwl_A 174 ALSTLDLSDNP 184 (312)
T ss_dssp SCCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 55555555443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.64 E-value=8.5e-08 Score=68.53 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=39.0
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
+..+ +|++|+++++ .+..+|. + ..+++|+.|++++| .+..++ .+..+++|+.|++++| .+..+ ..+..+++
T Consensus 86 l~~l~~L~~L~l~~n-~l~~~~~-l--~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~ 157 (291)
T 1h6t_A 86 LANLKNLGWLFLDEN-KVKDLSS-L--KDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTK 157 (291)
T ss_dssp GTTCTTCCEEECCSS-CCCCGGG-G--TTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTT
T ss_pred cccCCCCCEEECCCC-cCCCChh-h--ccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCC
Confidence 4455 6666666654 3444443 3 45566666666655 344442 3444555555555443 23333 23334444
Q ss_pred cCeEeecCC
Q 045942 87 LKSLAIAEC 95 (131)
Q Consensus 87 L~~L~i~~~ 95 (131)
|++|++.+|
T Consensus 158 L~~L~L~~N 166 (291)
T 1h6t_A 158 LDTLSLEDN 166 (291)
T ss_dssp CSEEECCSS
T ss_pred CCEEEccCC
Confidence 444444433
No 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.59 E-value=3.9e-07 Score=71.53 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=63.1
Q ss_pred CCCCCCC-ccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCC--------------------------cccCCCC
Q 045942 5 DRKNTRP-HLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPN--------------------------FMALPGS 56 (131)
Q Consensus 5 ~~~i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~--------------------------l~~lp~~ 56 (131)
+..+..+ +|++|+++++.-...+| ..+ ..+++|+.|++++|.. +..+|..
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEW--RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGG--TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccc--cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence 3445556 77777777654333454 233 5556666666665531 1233444
Q ss_pred CCCcccccccccccccccCcCCCC-CCCCCCcCeEeecCCchhhhhc-CCCCC--CCCCcccCCCeeEecCcccC
Q 045942 57 LKDLEALETLVIARCPKLSSLPED-MHHVTTLKSLAIAECPALSERC-KPPTG--EDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 57 l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~~~~l~~~~-~~~~~--~~~~~i~~l~~l~~~~~~~~ 127 (131)
++.+++|+.|++++| .+..+|.. +..+++|++|++.++.--.-.. ..+.+ ..+..+.+++.+.+.++.+.
T Consensus 476 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 476 FQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred cccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 555666666666654 34444433 5566666777666654211000 00001 12355667777777777655
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.59 E-value=7.2e-08 Score=69.49 Aligned_cols=82 Identities=7% Similarity=0.094 Sum_probs=70.4
Q ss_pred CC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcC
Q 045942 10 RP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLK 88 (131)
Q Consensus 10 ~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~ 88 (131)
.+ +|++|+++++ .+..++... .+++|+.|++++| .+..+|..+..+++|+.|++++| .+..+|..+..+++|+
T Consensus 167 ~l~~L~~L~L~~N-~l~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~ 240 (317)
T 3o53_A 167 SSDTLEHLNLQYN-FIYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLE 240 (317)
T ss_dssp GTTTCCEEECTTS-CCCEEECCC---CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCC
T ss_pred ccCcCCEEECCCC-cCccccccc---ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCC
Confidence 45 8999999987 577776543 6899999999998 78888888999999999999986 5778999999999999
Q ss_pred eEeecCCch
Q 045942 89 SLAIAECPA 97 (131)
Q Consensus 89 ~L~i~~~~~ 97 (131)
.|++.+++-
T Consensus 241 ~L~l~~N~~ 249 (317)
T 3o53_A 241 HFDLRGNGF 249 (317)
T ss_dssp EEECTTCCC
T ss_pred EEEccCCCc
Confidence 999998763
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.57 E-value=5e-07 Score=68.50 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=35.7
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
+..+ +|++|+++++ .+..+| + +.+++|+.|++++| .+..+| ++.+++|++|++++| .+..+| +..+++
T Consensus 60 l~~l~~L~~L~Ls~n-~l~~~~--~--~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~ 128 (457)
T 3bz5_A 60 IEKLTGLTKLICTSN-NITTLD--L--SQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPL 128 (457)
T ss_dssp GGGCTTCSEEECCSS-CCSCCC--C--TTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTT
T ss_pred hcccCCCCEEEccCC-cCCeEc--c--ccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCC-cCCeec--CCCCCc
Confidence 4444 5666666554 344443 3 45555555555555 344443 444555555555443 233332 333444
Q ss_pred cCeEeec
Q 045942 87 LKSLAIA 93 (131)
Q Consensus 87 L~~L~i~ 93 (131)
|++|++.
T Consensus 129 L~~L~l~ 135 (457)
T 3bz5_A 129 LTYLNCA 135 (457)
T ss_dssp CCEEECT
T ss_pred CCEEECC
Confidence 4444443
No 109
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=2.6e-07 Score=67.11 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=76.4
Q ss_pred ceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCcCCC-CCCCCCCcCeEe
Q 045942 14 RRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPE-DMHHVTTLKSLA 91 (131)
Q Consensus 14 ~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 91 (131)
..++.++...+..+|. + ..+++|+.|+++++..+..+| ..++.+++|+.|+++++ .+..+++ .+.++++|+.|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l--~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-L--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCTTTTT-S--CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCCccCC-C--CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEe
Confidence 4556666436889999 7 899999999999744788887 46889999999999986 5777765 468899999999
Q ss_pred ecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 92 IAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 92 i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
+.++.- .. .....+..+. ++.+.+.++.+.
T Consensus 87 l~~N~l-~~----~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNAL-ES----LSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSSCC-SC----CCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCCcc-ce----eCHHHcccCC-ceEEEeeCCCcc
Confidence 998752 11 1111222233 778888777654
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.56 E-value=1.9e-07 Score=73.32 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=50.4
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT 85 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~ 85 (131)
.+..+ +|+.|++++| .+..++. + ..+++|+.|++++| .+..+| .+..+++|+.|++++|. +..++ .+..++
T Consensus 60 ~l~~l~~L~~L~Ls~N-~l~~~~~-l--~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~ 131 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGN-KLTDIKP-L--TNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLP 131 (605)
T ss_dssp TGGGCTTCCEEECTTS-CCCCCGG-G--GGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCT
T ss_pred HHccCCCCCEEEeeCC-CCCCChh-h--ccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCC
Confidence 35556 7777777765 4555655 4 56777777777776 555554 46667777777776653 44442 345556
Q ss_pred CcCeEeecCC
Q 045942 86 TLKSLAIAEC 95 (131)
Q Consensus 86 ~L~~L~i~~~ 95 (131)
+|+.|++.+|
T Consensus 132 ~L~~L~Ls~N 141 (605)
T 1m9s_A 132 QLESLYLGNN 141 (605)
T ss_dssp TCSEEECCSS
T ss_pred ccCEEECCCC
Confidence 6666666554
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.54 E-value=2.8e-07 Score=72.32 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=52.7
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT 85 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~ 85 (131)
.+..+ +|++|++++| .+..++ .+ ..+++|+.|++++| .+..+ ..+..+++|+.|++++|. +..+++ +..++
T Consensus 104 ~l~~l~~L~~L~Ls~N-~l~~l~-~l--~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~ 175 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHN-GISDIN-GL--VHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLT 175 (605)
T ss_dssp TSTTCTTCCEEECTTS-CCCCCG-GG--GGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCT
T ss_pred hhccCCCCCEEEecCC-CCCCCc-cc--cCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCC
Confidence 34444 5555555554 233443 23 45556666666655 34444 345556666666666543 444433 55566
Q ss_pred CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942 86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMI 126 (131)
Q Consensus 86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 126 (131)
+|+.|++.+|..-. -.....+.++..|.+.++.+
T Consensus 176 ~L~~L~Ls~N~i~~-------l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 176 KLQNLYLSKNHISD-------LRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp TCCEEECCSSCCCB-------CGGGTTCTTCSEEECCSEEE
T ss_pred CCCEEECcCCCCCC-------ChHHccCCCCCEEEccCCcC
Confidence 66666666553110 01233445555555555543
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.53 E-value=1e-07 Score=72.82 Aligned_cols=111 Identities=11% Similarity=0.030 Sum_probs=62.3
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVT 85 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~ 85 (131)
.++.+ +|++|+++++.-....|..+. ..+++|+.|++++| .+..+|. ...+++|+.|++++| .+..+|..+..++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~ 214 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAA 214 (487)
T ss_dssp CGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGT
T ss_pred hhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCC-ccccccc-cccCCCCCEEECCCC-CCCCCCHhHcCCC
Confidence 34445 666666666532222333331 25666777777666 4555543 334667777777664 4556666666667
Q ss_pred CcCeEeecCCchhhhhcCCCCCCCCCcccCCCeeEecCcccC
Q 045942 86 TLKSLAIAECPALSERCKPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 86 ~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
+|+.|++.++.--. .+..+..+.++..+.+.++.+.
T Consensus 215 ~L~~L~Ls~N~l~~------lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 215 GVTWISLRNNKLVL------IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TCSEEECTTSCCCE------ECTTCCCCTTCCEEECTTCCBC
T ss_pred CccEEEecCCcCcc------cchhhccCCCCCEEEcCCCCCc
Confidence 77777777654211 1122445566777777776654
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.51 E-value=2.6e-08 Score=71.80 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=19.6
Q ss_pred CCcccccccccccccccC-cCCCCCCCCCCcCeEeecCCc
Q 045942 58 KDLEALETLVIARCPKLS-SLPEDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 58 ~~l~sL~~L~l~~c~~l~-~lp~~~~~l~~L~~L~i~~~~ 96 (131)
..+++|++|++.+|..+. ..+..+..+++|++|++.+|.
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 344555555555554222 233344455566666666654
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.50 E-value=1.3e-06 Score=66.22 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=41.3
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
++.+ +|++|+++++ .+..++ + +.+++|+.|+++++ .+..+| ++.+++|++|++.+|. +..++ +..+++
T Consensus 81 ~~~l~~L~~L~Ls~N-~l~~~~--~--~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~ 149 (457)
T 3bz5_A 81 LSQNTNLTYLACDSN-KLTNLD--V--TPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQ 149 (457)
T ss_dssp CTTCTTCSEEECCSS-CCSCCC--C--TTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTT
T ss_pred cccCCCCCEEECcCC-CCceee--c--CCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCc
Confidence 4555 6777777665 355554 4 55666666666666 444443 5555566666655542 33332 334444
Q ss_pred cCeEeecCC
Q 045942 87 LKSLAIAEC 95 (131)
Q Consensus 87 L~~L~i~~~ 95 (131)
|++|++.+|
T Consensus 150 L~~L~l~~n 158 (457)
T 3bz5_A 150 LTELDCHLN 158 (457)
T ss_dssp CCEEECTTC
T ss_pred CCEEECCCC
Confidence 455444444
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.49 E-value=1.2e-07 Score=72.41 Aligned_cols=86 Identities=7% Similarity=0.076 Sum_probs=72.2
Q ss_pred CCCC-CC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCC
Q 045942 6 RKNT-RP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHH 83 (131)
Q Consensus 6 ~~i~-~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~ 83 (131)
..+. .+ +|++|++++| .+..+|.. ..+++|+.|++++| .+..+|..+..+++|+.|++++| .+..+|..+..
T Consensus 162 ~~l~~~l~~L~~L~Ls~N-~l~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~ 235 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYN-FIYDVKGQ---VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRF 235 (487)
T ss_dssp GGGGGGTTTCCEEECTTS-CCCEEECC---CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCC
T ss_pred HHHhhhCCcccEEecCCC-cccccccc---ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhcc
Confidence 3444 56 9999999987 47777654 46899999999999 78888888999999999999986 57789999999
Q ss_pred CCCcCeEeecCCch
Q 045942 84 VTTLKSLAIAECPA 97 (131)
Q Consensus 84 l~~L~~L~i~~~~~ 97 (131)
+++|+.|++.+++-
T Consensus 236 l~~L~~L~l~~N~l 249 (487)
T 3oja_A 236 SQNLEHFDLRGNGF 249 (487)
T ss_dssp CTTCCEEECTTCCB
T ss_pred CCCCCEEEcCCCCC
Confidence 99999999998764
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.48 E-value=2.8e-07 Score=67.33 Aligned_cols=83 Identities=11% Similarity=0.134 Sum_probs=60.9
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCC-CCCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPE-DMHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~-~~~~l~~L~~ 89 (131)
++++|+++++ +++.+|.+.| ..+++|+.|+++++..++.+|. .+.+++++.++.+.++.++..+++ .+..+++|++
T Consensus 31 ~l~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 31 NAIELRFVLT-KLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TCSEEEEESC-CCSEECTTSS-TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCEEEccCC-cCCCcCHHHH-cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 7899999875 6888886543 7889999999998865566764 356677777666666667777754 4677788888
Q ss_pred EeecCCc
Q 045942 90 LAIAECP 96 (131)
Q Consensus 90 L~i~~~~ 96 (131)
|++.++.
T Consensus 109 L~l~~n~ 115 (350)
T 4ay9_X 109 LLISNTG 115 (350)
T ss_dssp EEEEEEC
T ss_pred ccccccc
Confidence 8876553
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.47 E-value=4.1e-07 Score=66.43 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=53.7
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
+|++|.+.++..++.+|...| ..+++|+.|+++++ .+..+|.. .+.+|+.|.+.++..++.+|. +..+++|+.++
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVF-HGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEAS 252 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEE
T ss_pred chhHHhhccCCcccCCCHHHh-ccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCc
Confidence 677777776667777775543 67778888888877 67777753 245555566666677777774 66777888887
Q ss_pred ecC
Q 045942 92 IAE 94 (131)
Q Consensus 92 i~~ 94 (131)
+.+
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 753
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.44 E-value=6.2e-07 Score=67.69 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEeecCC
Q 045942 35 CTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAEC 95 (131)
Q Consensus 35 ~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~ 95 (131)
.+++|+.|++++| .+..++. ++.+++|+.|++++|. +..++. +..+++|+.|++.+|
T Consensus 285 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 285 GLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp TCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS
T ss_pred CCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCC
Confidence 4444444444444 2333322 3444444444444442 222222 333444444444443
No 119
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.44 E-value=1.6e-07 Score=67.49 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=65.3
Q ss_pred CCCCC--CCC-ccceEeecCcCCCcccchhhhccCC-----CCcCEEeecCCCCcccCC-CCCCCccccccccccccccc
Q 045942 4 HDRKN--TRP-HLRRVVIGEITQFLELPQWLLQCCT-----DTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKL 74 (131)
Q Consensus 4 ~~~~i--~~l-~L~~L~i~~c~~l~~lp~~~~~~~l-----~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l 74 (131)
.|..+ ..+ +|++|+++++. +..+|..+ +.+ ++|++|+++++ .+..++ ..++.+++|++|++++|...
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVS-WATRDAWL--AELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCB-CSSSSSHH--HHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred hHHHHHHhcCCCccEEEccCCC-CcchhHHH--HHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcC
Confidence 45554 677 99999999864 66667655 454 89999999998 566665 67889999999999987644
Q ss_pred Cc--CCCCC--CCCCCcCeEeecCCc
Q 045942 75 SS--LPEDM--HHVTTLKSLAIAECP 96 (131)
Q Consensus 75 ~~--lp~~~--~~l~~L~~L~i~~~~ 96 (131)
+. +|..+ ..+++|++|++.+|.
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred cchHHHHHHHhccCCCCCEEECCCCc
Confidence 32 23333 667788888888764
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.43 E-value=2.4e-08 Score=71.96 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=30.7
Q ss_pred CCCC-ccceEeecCcCCCcc-cchhhhccCCCCcCEEeecCCCCcccCCCCCCCccccccccccccc
Q 045942 8 NTRP-HLRRVVIGEITQFLE-LPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCP 72 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~-lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~ 72 (131)
+..+ +|++|++++|.-... +|..+ ..+++|+.|++++|.--...|..+..+++|++|++.+|.
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 3444 666666666542111 44444 555566666665553111233334445555555555543
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.40 E-value=1.9e-10 Score=77.91 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=30.0
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccc
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARC 71 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c 71 (131)
+..+ +|++|+++++ .+..+| .+ ..+++|+.|++++| .+..+|..+..+++|+.|++++|
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~-~~--~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS-SL--SGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC-CH--HHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE
T ss_pred HhcCCCCCEEECCCC-CCcccc-cc--ccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC
Confidence 3344 5666666554 344455 34 45555666666555 44455544444455555555443
No 122
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=9.5e-08 Score=64.09 Aligned_cols=88 Identities=13% Similarity=0.267 Sum_probs=63.7
Q ss_pred CCCccceEeecCcCCCcccc-hhhhccCCCCcCEEeecCCCCcccCC-CCCCCc----ccccccccccccccCcCC-CCC
Q 045942 9 TRPHLRRVVIGEITQFLELP-QWLLQCCTDTLQSLIIVDCPNFMALP-GSLKDL----EALETLVIARCPKLSSLP-EDM 81 (131)
Q Consensus 9 ~~l~L~~L~i~~c~~l~~lp-~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l----~sL~~L~l~~c~~l~~lp-~~~ 81 (131)
+.+.|+.|++++|. +...- ..+ ..+++|+.|++++|..+..-- ..+..+ ++|++|++++|+.++.-. ..+
T Consensus 59 ~~~~L~~LDLs~~~-Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 59 DKYKIQAIDATDSC-IMSIGFDHM--EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp TCCCEEEEEEESCC-CCGGGGGGG--TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred CCceEeEEeCcCCC-ccHHHHHHh--cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 44489999999996 54322 334 678999999999997665321 123333 479999999999776421 124
Q ss_pred CCCCCcCeEeecCCchhh
Q 045942 82 HHVTTLKSLAIAECPALS 99 (131)
Q Consensus 82 ~~l~~L~~L~i~~~~~l~ 99 (131)
.++++|++|++++|+.+.
T Consensus 136 ~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCEEECCCCCCCC
Confidence 567899999999999776
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.38 E-value=5e-07 Score=68.20 Aligned_cols=80 Identities=14% Similarity=0.261 Sum_probs=50.6
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
+..+ +|++|++++| .+..+|. + ..+++|+.|++++| .+..++. ++.+++|++|++++| .+..++. +..+++
T Consensus 64 ~~~l~~L~~L~Ls~n-~l~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~ 135 (466)
T 1o6v_A 64 VEYLNNLTQINFSNN-QLTDITP-L--KNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTN 135 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTT
T ss_pred hhhhcCCCEEECCCC-ccCCchh-h--hccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCC
Confidence 4445 7777777765 3556655 4 66777777777776 4555554 666777777777665 3555544 556666
Q ss_pred cCeEeecCC
Q 045942 87 LKSLAIAEC 95 (131)
Q Consensus 87 L~~L~i~~~ 95 (131)
|++|++.+|
T Consensus 136 L~~L~l~~n 144 (466)
T 1o6v_A 136 LNRLELSSN 144 (466)
T ss_dssp CSEEEEEEE
T ss_pred CCEEECCCC
Confidence 666666554
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.35 E-value=4.4e-06 Score=63.23 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=36.3
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
+|++|+++++ .+..+| .+ +.+++|+.|+++++ .+..+|..+ ++|++|++.+| .+..+| .+..+++|++|+
T Consensus 132 ~L~~L~L~~n-~l~~lp-~~--~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 132 LLEYLGVSNN-QLEKLP-EL--QNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIY 201 (454)
T ss_dssp TCCEEECCSS-CCSSCC-CC--TTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEE
T ss_pred CCCEEECcCC-CCCCCc-cc--CCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEE
Confidence 5666666554 344555 34 55666666666655 344444322 34455555443 233344 344444444444
Q ss_pred ecCC
Q 045942 92 IAEC 95 (131)
Q Consensus 92 i~~~ 95 (131)
+.+|
T Consensus 202 l~~N 205 (454)
T 1jl5_A 202 ADNN 205 (454)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 4433
No 125
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.31 E-value=1.5e-06 Score=62.22 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=59.8
Q ss_pred ccceEeecCcCCCccc-chhhhccCC---CCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCc
Q 045942 12 HLRRVVIGEITQFLEL-PQWLLQCCT---DTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTL 87 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~l-p~~~~~~~l---~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L 87 (131)
+|++|+++++. +..+ |..+ ..+ ++|+.|++++| .+..+|..+. ++|+.|++++| .+..+|. +..+++|
T Consensus 225 ~L~~L~Ls~N~-l~~~~p~~~--~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~-~~~l~~L 296 (310)
T 4glp_A 225 QPHSLDLSHNS-LRATVNPSA--PRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ-PDELPEV 296 (310)
T ss_dssp CCSSEECTTSC-CCCCCCSCC--SSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCC-TTSCCCC
T ss_pred CCCEEECCCCC-CCccchhhH--HhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCch-hhhCCCc
Confidence 67777777764 4444 6554 444 79999999998 7889998775 89999999886 5777765 6778999
Q ss_pred CeEeecCCc
Q 045942 88 KSLAIAECP 96 (131)
Q Consensus 88 ~~L~i~~~~ 96 (131)
+.|++.+++
T Consensus 297 ~~L~L~~N~ 305 (310)
T 4glp_A 297 DNLTLDGNP 305 (310)
T ss_dssp SCEECSSTT
T ss_pred cEEECcCCC
Confidence 999998876
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.19 E-value=1.2e-08 Score=68.91 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=69.3
Q ss_pred CCCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCC--CCCC
Q 045942 7 KNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPE--DMHH 83 (131)
Q Consensus 7 ~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~--~~~~ 83 (131)
.+..+ +|++|+++++ .+..+|..+ ..+++|+.|++++| .+..+| .+..+++|+.|++++| .+..++. .+..
T Consensus 65 ~~~~l~~L~~L~l~~n-~l~~l~~~~--~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~ 138 (198)
T 1ds9_A 65 SLSGMENLRILSLGRN-LIKKIENLD--AVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAA 138 (198)
T ss_dssp CHHHHTTCCEEEEEEE-EECSCSSHH--HHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTT
T ss_pred ccccCCCCCEEECCCC-Ccccccchh--hcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhc
Confidence 44555 8999999987 577888766 67789999999998 677787 6888999999999986 4666554 5778
Q ss_pred CCCcCeEeecCCch
Q 045942 84 VTTLKSLAIAECPA 97 (131)
Q Consensus 84 l~~L~~L~i~~~~~ 97 (131)
+++|++|++.+++-
T Consensus 139 l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 139 LDKLEDLLLAGNPL 152 (198)
T ss_dssp TTTCSEEEECSCHH
T ss_pred CCCCCEEEecCCcc
Confidence 89999999999874
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.12 E-value=1.5e-05 Score=62.85 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=40.3
Q ss_pred CCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEeecCCchhhhhcCCCCCCCCCcccCC
Q 045942 37 DTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLAIAECPALSERCKPPTGEDWPKIAHI 116 (131)
Q Consensus 37 ~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~l 116 (131)
++|+.|++++| .+..+| ..+++|+.|++++| .+..+|. .+++|+.|++.+|. +. .....+..+.++
T Consensus 221 ~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~-----~lp~~l~~l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LT-----RLPESLIHLSSE 286 (622)
T ss_dssp TTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CC-----SCCGGGGGSCTT
T ss_pred CCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CC-----cCCHHHhhcccc
Confidence 44555555555 444454 23455666666554 4555555 33466666666553 11 112234455666
Q ss_pred CeeEecCcccC
Q 045942 117 PEILLDDKMIK 127 (131)
Q Consensus 117 ~~l~~~~~~~~ 127 (131)
..+.+.++.+.
T Consensus 287 ~~L~L~~N~l~ 297 (622)
T 3g06_A 287 TTVNLEGNPLS 297 (622)
T ss_dssp CEEECCSCCCC
T ss_pred CEEEecCCCCC
Confidence 66777666654
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.09 E-value=6.3e-06 Score=64.92 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=61.4
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCCcCeEe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTTLKSLA 91 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 91 (131)
+|++|+++++ .+..+|. .+++|+.|++++| .+..+|. .+++|+.|++++| .+..+|..+..+++|+.|+
T Consensus 222 ~L~~L~Ls~N-~L~~lp~-----~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 222 GLKELIVSGN-RLTSLPV-----LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEE
T ss_pred CCCEEEccCC-ccCcCCC-----CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEE
Confidence 5777777765 4666662 4588999999998 7888987 5789999999987 5779999999999999999
Q ss_pred ecCCc
Q 045942 92 IAECP 96 (131)
Q Consensus 92 i~~~~ 96 (131)
+.+++
T Consensus 291 L~~N~ 295 (622)
T 3g06_A 291 LEGNP 295 (622)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 99987
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.08 E-value=1.1e-05 Score=60.98 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=41.2
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCcccccccccccccccCcCCCCCCCCCC
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIARCPKLSSLPEDMHHVTT 86 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~~ 86 (131)
++++ +|++|+++++ .+..+|... ++|+.|++++| .+..+| .++.+++|++|++.+| .+..+|... ++
T Consensus 149 ~~~l~~L~~L~l~~N-~l~~lp~~~-----~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~ 216 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNN-SLKKLPDLP-----PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LS 216 (454)
T ss_dssp CTTCTTCCEEECCSS-CCSCCCCCC-----TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TT
T ss_pred cCCCCCCCEEECCCC-cCcccCCCc-----ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---Cc
Confidence 5555 6666666654 344555322 35666666665 455555 3556666666666554 344444432 35
Q ss_pred cCeEeecCC
Q 045942 87 LKSLAIAEC 95 (131)
Q Consensus 87 L~~L~i~~~ 95 (131)
|++|++.+|
T Consensus 217 L~~L~l~~n 225 (454)
T 1jl5_A 217 LESIVAGNN 225 (454)
T ss_dssp CCEEECCSS
T ss_pred ccEEECcCC
Confidence 666666555
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.02 E-value=6.5e-06 Score=64.26 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=15.2
Q ss_pred cccccccccccCcCCCCCCCCCCcCeEeecCCc
Q 045942 64 ETLVIARCPKLSSLPEDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 64 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~~~ 96 (131)
+.|++++| .+..+|..+..+++|+.|++.+++
T Consensus 210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 210 IFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp EEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred eEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 44444443 344455444445555555555443
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.97 E-value=6.8e-05 Score=58.52 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=22.8
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCCCCCCccccccccccc
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLEALETLVIAR 70 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~sL~~L~l~~ 70 (131)
+|++|+++++ .+..+| . .+++|+.|++++| .+..+|. +.. +|+.|++++
T Consensus 81 ~L~~L~Ls~N-~l~~ip-~----~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 81 QITVLEITQN-ALISLP-E----LPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSS-CCSCCC-C----CCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CCCEEECcCC-CCcccc-c----ccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 5566666554 344555 1 2345555555554 3444443 322 444444444
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.94 E-value=3e-07 Score=67.75 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=8.4
Q ss_pred ccCCCeeEecCcccC
Q 045942 113 IAHIPEILLDDKMIK 127 (131)
Q Consensus 113 i~~l~~l~~~~~~~~ 127 (131)
+++++.+.+.++.+.
T Consensus 302 l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 302 MPDLLFLELNGNRFS 316 (386)
T ss_dssp CTTCCEEECTTSBSC
T ss_pred CCCceEEEccCCcCC
Confidence 345556666665554
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.83 E-value=1.1e-06 Score=64.69 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=38.7
Q ss_pred ccceEeecCcCCC-----cccchhhhccCCCCcCEEeecCCCCccc-----CCCCC--CCcccccccccccccccC----
Q 045942 12 HLRRVVIGEITQF-----LELPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSL--KDLEALETLVIARCPKLS---- 75 (131)
Q Consensus 12 ~L~~L~i~~c~~l-----~~lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l--~~l~sL~~L~l~~c~~l~---- 75 (131)
+|++|++++|. + ..+|..+ ..+++|+.|++++|. +.. ++..+ +.+++|++|++++|..-.
T Consensus 217 ~L~~L~Ls~n~-l~~~g~~~l~~~l--~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 217 ELKVLDLQDNT-FTHLGSSALAIAL--KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp TCCEEECCSSC-CHHHHHHHHHHHG--GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred CccEEECcCCC-CCcHHHHHHHHHH--ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 55555555543 3 3344444 455555555555552 322 23333 225556666665543221
Q ss_pred cCCCCC-CCCCCcCeEeecCCc
Q 045942 76 SLPEDM-HHVTTLKSLAIAECP 96 (131)
Q Consensus 76 ~lp~~~-~~l~~L~~L~i~~~~ 96 (131)
.+|..+ .++++|+.|++.+|+
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHhcCCCceEEEccCCc
Confidence 144444 334566666665554
No 134
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=6.9e-06 Score=54.97 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=49.7
Q ss_pred CCCC-ccceEeecCcCCCcccc-hhhhccCC----CCcCEEeecCCCCcccCC-CCCCCcccccccccccccccCc
Q 045942 8 NTRP-HLRRVVIGEITQFLELP-QWLLQCCT----DTLQSLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSS 76 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp-~~~~~~~l----~~L~~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~ 76 (131)
+..+ +|++|++++|..++.-- ..+ ..+ ++|+.|++++|++++.-- ..+..+++|++|++++|+.++.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L--~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERL--SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHH--HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHH--HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 5567 99999999998775422 223 333 479999999998776422 2466789999999999997764
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.0002 Score=51.62 Aligned_cols=77 Identities=10% Similarity=0.168 Sum_probs=55.1
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCccccc-ccccccccccCcCCC-CCCCCCCcC
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALE-TLVIARCPKLSSLPE-DMHHVTTLK 88 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~-~L~l~~c~~l~~lp~-~~~~l~~L~ 88 (131)
+|+++++.++ .+..+|...| ..+++|+.+++.+. +..++. .+..+++|+ .+.+.+ .++.++. .+..+++|+
T Consensus 227 ~L~~l~L~~n-~i~~I~~~aF-~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 227 NLVSLDISKT-NATTIPDFTF-AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp TCCEEECTTB-CCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred CCeEEECCCC-CcceecHhhh-hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 7788888764 4777886655 67788888888764 677764 466777888 887765 5667764 467777888
Q ss_pred eEeecC
Q 045942 89 SLAIAE 94 (131)
Q Consensus 89 ~L~i~~ 94 (131)
.+.+.+
T Consensus 301 ~l~l~~ 306 (329)
T 3sb4_A 301 YVLATG 306 (329)
T ss_dssp EEEECS
T ss_pred EEEeCC
Confidence 888754
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.46 E-value=1.2e-05 Score=58.73 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=49.2
Q ss_pred ccceEeecCcCCCcccc-----hhhhccCCC-CcCEEeecCCCCcccC-CCCCCCc-----ccccccccccccccCcCCC
Q 045942 12 HLRRVVIGEITQFLELP-----QWLLQCCTD-TLQSLIIVDCPNFMAL-PGSLKDL-----EALETLVIARCPKLSSLPE 79 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp-----~~~~~~~l~-~L~~L~l~~~~~l~~l-p~~l~~l-----~sL~~L~l~~c~~l~~lp~ 79 (131)
+|++|++++|. +...+ ..+ ..++ +|+.|++++| .+... +..+..+ ++|++|++++|. +...+.
T Consensus 23 ~L~~L~Ls~n~-l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 23 GVTSLDLSLNN-LYSISTVELIQAF--ANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp TCCEEECTTSC-GGGSCHHHHHHHH--HTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred CceEEEccCCC-CChHHHHHHHHHH--HhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 58888888764 66655 334 5677 7888888887 45443 2233333 778888887764 333322
Q ss_pred C-----CCCC-CCcCeEeecCCc
Q 045942 80 D-----MHHV-TTLKSLAIAECP 96 (131)
Q Consensus 80 ~-----~~~l-~~L~~L~i~~~~ 96 (131)
. +... ++|++|++.+|.
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHHhCCCCccEEECcCCc
Confidence 1 2233 577777777665
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.40 E-value=0.00014 Score=55.91 Aligned_cols=10 Identities=10% Similarity=0.434 Sum_probs=5.6
Q ss_pred ccceEeecCc
Q 045942 12 HLRRVVIGEI 21 (131)
Q Consensus 12 ~L~~L~i~~c 21 (131)
+|++|++++|
T Consensus 165 ~L~~L~L~~~ 174 (592)
T 3ogk_B 165 KIKTLLMEES 174 (592)
T ss_dssp TCSEEECTTC
T ss_pred CCCEEECccc
Confidence 5555555554
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=8.8e-05 Score=52.69 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=42.9
Q ss_pred cCCCCcCEEeecCCCCcccC---CCCCCCcccccccccccccccCcCCCCCCCCC--CcCeEeecCCch
Q 045942 34 CCTDTLQSLIIVDCPNFMAL---PGSLKDLEALETLVIARCPKLSSLPEDMHHVT--TLKSLAIAECPA 97 (131)
Q Consensus 34 ~~l~~L~~L~l~~~~~l~~l---p~~l~~l~sL~~L~l~~c~~l~~lp~~~~~l~--~L~~L~i~~~~~ 97 (131)
..+++|+.|+++++ .+..+ |..+..+++|+.|+++++ .+..+ ..+..+. +|++|++.+++-
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcC
Confidence 35788999999988 55554 344567899999999875 45554 2233333 899999998883
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.36 E-value=1.1e-05 Score=62.11 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=26.7
Q ss_pred CCCcCEEeecCCCCccc--CCCCCCCcccccccccccccccCc-----CCCCCCCCCCcCeEeecCCc
Q 045942 36 TDTLQSLIIVDCPNFMA--LPGSLKDLEALETLVIARCPKLSS-----LPEDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 36 l~~L~~L~l~~~~~l~~--lp~~l~~l~sL~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~i~~~~ 96 (131)
+++|+.|++.+|..+.. ++.....+++|++|++.+|. +.. ++.....+++|++|++.+|.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 44555555555533322 22222345555555555554 111 22222244456666665553
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.33 E-value=4.8e-05 Score=58.45 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=47.0
Q ss_pred ccceEeecCcCCCcc--cchhhhccCCCCcCEEeecCCCCccc-----CCCCCCCcccccccccccccccCcCC-----C
Q 045942 12 HLRRVVIGEITQFLE--LPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPKLSSLP-----E 79 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~--lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~l~~lp-----~ 79 (131)
+|++|++++|..+.. ++... ..+++|+.|++++|. +.. ++.....+++|+.|++.+|. ..+. .
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~ 205 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIA--ATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALER 205 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHH--HHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHH
T ss_pred CCcEEeCCCcCCCCHHHHHHHH--HhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHH
Confidence 667777766654433 33333 467888888888874 322 22223356788888887764 1121 1
Q ss_pred CCCCCCCcCeEeecCCc
Q 045942 80 DMHHVTTLKSLAIAECP 96 (131)
Q Consensus 80 ~~~~l~~L~~L~i~~~~ 96 (131)
-...+++|++|++.+|.
T Consensus 206 l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp HHHHCTTCCEEECCTTS
T ss_pred HHHhCCCCcEEecCCCC
Confidence 12235688888888773
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.31 E-value=0.00072 Score=48.62 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=64.0
Q ss_pred CCCCCC-ccceEeecCcCCCcccchhhhccCCCCcC-EEeecCCCCcccCC-CCCCCcccccccccccccccCcCCCC-C
Q 045942 6 RKNTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQ-SLIIVDCPNFMALP-GSLKDLEALETLVIARCPKLSSLPED-M 81 (131)
Q Consensus 6 ~~i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~-~L~l~~~~~l~~lp-~~l~~l~sL~~L~l~~c~~l~~lp~~-~ 81 (131)
..+.++ +|+.+++.+. +..++...| ..+++|+ .+.+.+ .+..++ ..+..+++|+.+.+.. ..+..++.. +
T Consensus 244 ~aF~~~~~L~~l~l~~n--i~~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF 317 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN--LKTIGQRVF-SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELF 317 (329)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTT
T ss_pred hhhhCCCCCCEEECCcc--cceehHHHh-hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhh
Confidence 457777 9999999763 888987665 7889999 999986 677886 4578899999999865 467888764 6
Q ss_pred CCCCCcCeEee
Q 045942 82 HHVTTLKSLAI 92 (131)
Q Consensus 82 ~~l~~L~~L~i 92 (131)
.++++|+.++.
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 77788888763
No 142
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.30 E-value=1.9e-05 Score=58.96 Aligned_cols=80 Identities=16% Similarity=0.286 Sum_probs=46.0
Q ss_pred ccceEeecCcCCCc-----ccchhhhccCCCCcCEEeecCCCCcccC-CCC-CCCcc----cccccccccccccC-----
Q 045942 12 HLRRVVIGEITQFL-----ELPQWLLQCCTDTLQSLIIVDCPNFMAL-PGS-LKDLE----ALETLVIARCPKLS----- 75 (131)
Q Consensus 12 ~L~~L~i~~c~~l~-----~lp~~~~~~~l~~L~~L~l~~~~~l~~l-p~~-l~~l~----sL~~L~l~~c~~l~----- 75 (131)
+|++|++++|. +. .++..+ ..+++|++|+++++. +... +.. ...++ +|++|++++|. +.
T Consensus 29 ~L~~L~L~~~~-l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~ 103 (461)
T 1z7x_W 29 QCQVVRLDDCG-LTEARCKDISSAL--RVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG 103 (461)
T ss_dssp TCSEEEEESSC-CCHHHHHHHHHHH--HTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred CccEEEccCCC-CCHHHHHHHHHHH--HhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHH
Confidence 67777777764 33 334445 566777777777763 3221 111 11222 57777777764 33
Q ss_pred cCCCCCCCCCCcCeEeecCCc
Q 045942 76 SLPEDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 76 ~lp~~~~~l~~L~~L~i~~~~ 96 (131)
.++..+..+++|++|++.+|.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHccCCceeEEECCCCc
Confidence 345556666777777777665
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.15 E-value=7.2e-05 Score=54.61 Aligned_cols=77 Identities=9% Similarity=0.119 Sum_probs=52.5
Q ss_pred EeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCC-----CCCCCcc-cccccccccccccCcC-CCCCCCC----
Q 045942 16 VVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALP-----GSLKDLE-ALETLVIARCPKLSSL-PEDMHHV---- 84 (131)
Q Consensus 16 L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp-----~~l~~l~-sL~~L~l~~c~~l~~l-p~~~~~l---- 84 (131)
+.++.+.--+.+|..+ ...++|+.|++++| .+...+ ..+..++ +|++|++++|. +... +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~--~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT--SIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHH--TSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHHH--hCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhcc
Confidence 4555543333445554 55566999999999 577665 4566778 89999999974 4443 3333332
Q ss_pred -CCcCeEeecCCc
Q 045942 85 -TTLKSLAIAECP 96 (131)
Q Consensus 85 -~~L~~L~i~~~~ 96 (131)
++|++|++.+|.
T Consensus 79 ~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 79 PANVTSLNLSGNF 91 (362)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCccEEECcCCc
Confidence 799999999886
No 144
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.10 E-value=2.4e-05 Score=58.42 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=18.1
Q ss_pred cccccccccccccccC-----cCCCCCCCCCCcCeEeecCCc
Q 045942 60 LEALETLVIARCPKLS-----SLPEDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 60 l~sL~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~i~~~~ 96 (131)
.++|++|++++|. +. .+|..+..+++|++|++.+|+
T Consensus 369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 3455555555543 22 344444445556666665554
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.96 E-value=0.00064 Score=52.23 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=7.6
Q ss_pred cCCCCcCEEeecCC
Q 045942 34 CCTDTLQSLIIVDC 47 (131)
Q Consensus 34 ~~l~~L~~L~l~~~ 47 (131)
..+++|+.|++++|
T Consensus 217 ~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 217 RNCRSLVSVKVGDF 230 (592)
T ss_dssp HHCTTCCEEECSSC
T ss_pred hhCCCCcEEeccCc
Confidence 34455555555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.60 E-value=0.00019 Score=53.04 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=26.8
Q ss_pred CCCcCEEeecCCCCccc-----CCCCCCCcccccccccccccccC-----cCCCCCCCCCCcCeEeecCCc
Q 045942 36 TDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPKLS-----SLPEDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 36 l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~i~~~~ 96 (131)
.++|+.|++++| .+.. ++..+...++|++|++++|. ++ .++..+...++|++|++.+|.
T Consensus 154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp TCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 355666666655 2322 22233445555556555543 22 122223333455555555543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.46 E-value=5.9e-05 Score=55.76 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=7.1
Q ss_pred CCCCcCeEeecCCc
Q 045942 83 HVTTLKSLAIAECP 96 (131)
Q Consensus 83 ~l~~L~~L~i~~~~ 96 (131)
..++|++|++.+|.
T Consensus 181 ~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 181 GNTSVTHLSLLHTG 194 (372)
T ss_dssp TCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCC
Confidence 34455555555543
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.37 E-value=0.0017 Score=46.05 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=49.5
Q ss_pred ccceEeecCcCCCccc---chhhhccCCCCcCEEeecCCCCcccCCCCCCCcc--cccccccccccccCcCCC-------
Q 045942 12 HLRRVVIGEITQFLEL---PQWLLQCCTDTLQSLIIVDCPNFMALPGSLKDLE--ALETLVIARCPKLSSLPE------- 79 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~l---p~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~--sL~~L~l~~c~~l~~lp~------- 79 (131)
+|++|+++++ .+..+ |..+ ..+++|+.|+++++ .+..+. .+..+. +|++|.+.+++.-..+|.
T Consensus 171 ~L~~L~Ls~N-~l~~l~~l~~~~--~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 171 ELLSLNLSNN-RLYRLDDMSSIV--QKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp TCCEEECTTS-CCCCCGGGTTHH--HHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCEEECCCC-CCCCCccchhHH--hhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 7888888875 45544 3444 57888999999887 566552 344444 888888888775554542
Q ss_pred CCCCCCCcCeEee
Q 045942 80 DMHHVTTLKSLAI 92 (131)
Q Consensus 80 ~~~~l~~L~~L~i 92 (131)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 1344566666653
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.26 E-value=0.0024 Score=47.04 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=9.4
Q ss_pred CCCCcCeEeecCCc
Q 045942 83 HVTTLKSLAIAECP 96 (131)
Q Consensus 83 ~l~~L~~L~i~~~~ 96 (131)
.+++|++|.+.+|.
T Consensus 250 ~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE 263 (362)
T ss_dssp TCTTCCEEEEESCT
T ss_pred CCCCcCEEeCCCCC
Confidence 35677777776665
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.17 E-value=0.063 Score=39.85 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=6.0
Q ss_pred CCCC-ccceEeec
Q 045942 8 NTRP-HLRRVVIG 19 (131)
Q Consensus 8 i~~l-~L~~L~i~ 19 (131)
+.++ +|+.+.+.
T Consensus 222 F~~~~~L~~l~l~ 234 (401)
T 4fdw_A 222 FLKTSQLKTIEIP 234 (401)
T ss_dssp TTTCTTCCCEECC
T ss_pred hhCCCCCCEEecC
Confidence 3444 55555554
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.93 E-value=0.00051 Score=50.69 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=46.1
Q ss_pred CCCCcCEEeecCCCC-------cccCCCCC--CCcccccccccccccccCcCCCC---CCCCCCcCeEeecCCchhhhhc
Q 045942 35 CTDTLQSLIIVDCPN-------FMALPGSL--KDLEALETLVIARCPKLSSLPED---MHHVTTLKSLAIAECPALSERC 102 (131)
Q Consensus 35 ~l~~L~~L~l~~~~~-------l~~lp~~l--~~l~sL~~L~l~~c~~l~~lp~~---~~~l~~L~~L~i~~~~~l~~~~ 102 (131)
.+|+|+.|+++.+.+ +..+-..+ ..+++|+.|.+.+|......+.. ...+++|++|+++.+. +...-
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G 295 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEG 295 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHH
Confidence 577888887753211 21111112 34788888888776532111110 1245688899887654 22110
Q ss_pred CCCCCCCCCcccCCCeeEecCcccC
Q 045942 103 KPPTGEDWPKIAHIPEILLDDKMIK 127 (131)
Q Consensus 103 ~~~~~~~~~~i~~l~~l~~~~~~~~ 127 (131)
..........++++..|.+.++.+.
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHhhcccCCcceEEECCCCcCC
Confidence 0000001134567777777766553
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.91 E-value=0.076 Score=39.41 Aligned_cols=53 Identities=11% Similarity=0.270 Sum_probs=21.4
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccc
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIA 69 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~ 69 (131)
+|+.+++.++ .+..++...| ..++|+.+.+.+ .+..++. .+..+++|+.+.+.
T Consensus 181 ~L~~l~l~~n-~l~~I~~~aF--~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 181 NLKKADLSKT-KITKLPASTF--VYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp TCCEEECTTS-CCSEECTTTT--TTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECC
T ss_pred cCCeeecCCC-cceEechhhE--eecccCEEEeCC--chheehhhHhhCCCCCCEEecC
Confidence 4444444332 3444443331 224444444431 2333332 23344555555553
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.77 E-value=0.0017 Score=43.07 Aligned_cols=110 Identities=18% Similarity=0.131 Sum_probs=65.8
Q ss_pred ccceEeecCcCCCcc-----cchhhhccCCCCcCEEeecCCCCccc-----CCCCCCCcccccccccccccccCc-----
Q 045942 12 HLRRVVIGEITQFLE-----LPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPKLSS----- 76 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~-----lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~l~~----- 76 (131)
+|++|++++|..+.. +...+ ...++|+.|++++| .+.. +.+.+...++|++|++++|. ++.
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L--~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~ 112 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEAL--KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILA 112 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHH--TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHH
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHH--HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHH
Confidence 799999988734432 33445 56789999999998 3432 22334556789999998864 332
Q ss_pred CCCCCCCCCCcCeEee--cCCchhhhhcCCCCCCCCCcccCCCeeEecCccc
Q 045942 77 LPEDMHHVTTLKSLAI--AECPALSERCKPPTGEDWPKIAHIPEILLDDKMI 126 (131)
Q Consensus 77 lp~~~~~l~~L~~L~i--~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 126 (131)
+...+...++|++|++ .++.- ..............-++++.+.+.++.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i-~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPL-GNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCC-CHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCC-CHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3445556678999999 55541 1100000001112235677777777655
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.23 E-value=0.028 Score=35.22 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=18.6
Q ss_pred CCcCEEeecCCCCcccCCCC-CCCccccccccccccc
Q 045942 37 DTLQSLIIVDCPNFMALPGS-LKDLEALETLVIARCP 72 (131)
Q Consensus 37 ~~L~~L~l~~~~~l~~lp~~-l~~l~sL~~L~l~~c~ 72 (131)
++|+.|+++++ .+..+|.. +..+++|+.|++.++|
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 34566666655 45555532 3445555555555543
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.10 E-value=0.038 Score=34.59 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=38.0
Q ss_pred EeecCCCCcc--cCCCCCCCcccccccccccccccCcCCCC-CCCCCCcCeEeecCCc
Q 045942 42 LIIVDCPNFM--ALPGSLKDLEALETLVIARCPKLSSLPED-MHHVTTLKSLAIAECP 96 (131)
Q Consensus 42 L~l~~~~~l~--~lp~~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~~~ 96 (131)
++-++. .+. .+|..+. ++|++|+++++ .+..+|.. +..+++|+.|++.++|
T Consensus 13 v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 13 VDCGRR-GLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EECCSS-CCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEeCCC-CCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 443433 566 7886543 57999999884 68899876 5778899999998776
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.64 E-value=0.0033 Score=41.71 Aligned_cols=80 Identities=21% Similarity=0.198 Sum_probs=55.3
Q ss_pred ccceEeecCcCCCcc-----cchhhhccCCCCcCEEeecCCCCccc-----CCCCCCCccccccccc--ccccccCc---
Q 045942 12 HLRRVVIGEITQFLE-----LPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVI--ARCPKLSS--- 76 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~-----lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l--~~c~~l~~--- 76 (131)
+|++|++++|. +.. +...+ ...++|+.|++++| .+.. +...+...++|++|++ .++. ++.
T Consensus 66 ~L~~L~Ls~n~-i~~~g~~~l~~~L--~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~ 140 (185)
T 1io0_A 66 YVKKFSIVGTR-SNDPVAFALAEML--KVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVE 140 (185)
T ss_dssp SCCEEECTTSC-CCHHHHHHHHHHH--HHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHH
T ss_pred CcCEEECcCCC-CChHHHHHHHHHH--HhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHH
Confidence 79999999874 432 33344 45688999999998 4543 3455677789999999 5553 332
Q ss_pred --CCCCCCCCCCcCeEeecCCc
Q 045942 77 --LPEDMHHVTTLKSLAIAECP 96 (131)
Q Consensus 77 --lp~~~~~l~~L~~L~i~~~~ 96 (131)
+...+...++|++|++.+|.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCcCEEeccCCC
Confidence 23334445689999998876
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.90 E-value=0.3 Score=35.70 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=17.2
Q ss_pred CCCcccccccccccccccCcCCCC-CCCCCCcCeEeecCC
Q 045942 57 LKDLEALETLVIARCPKLSSLPED-MHHVTTLKSLAIAEC 95 (131)
Q Consensus 57 l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~~ 95 (131)
+..+++|+.+.|.. .++.++.. +.+.++|+.+.+.+.
T Consensus 330 F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 330 FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 33445555554432 24444432 344555555555543
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.04 E-value=0.93 Score=33.03 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=56.2
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCe
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKS 89 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~ 89 (131)
.|+.+.+.+ .+..+....| ...++|+.+.+.. .+..+++ .+..+++|+.+.|.+ .++.+... +..+++|+.
T Consensus 266 ~L~~i~lp~--~~~~I~~~aF-~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 266 YLASVKMPD--SVVSIGTGAF-MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLER 338 (394)
T ss_dssp SCCEEECCT--TCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCE
T ss_pred cccEEeccc--ccceecCccc-ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCE
Confidence 455555432 2334443333 4567777777752 4666664 356678888888754 36666654 566778888
Q ss_pred EeecCCchhhhhcCCCCCCCCCcccCCCeeEecCc
Q 045942 90 LAIAECPALSERCKPPTGEDWPKIAHIPEILLDDK 124 (131)
Q Consensus 90 L~i~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~ 124 (131)
+.+... + ...+...+....++..+.+.++
T Consensus 339 i~ip~s--v----~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 339 IAIPSS--V----TKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEECTT--C----CBCCGGGGTTCTTCCEEEESSC
T ss_pred EEECcc--c----CEEhHhHhhCCCCCCEEEECCc
Confidence 887432 1 1112233445556666666554
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.71 E-value=0.43 Score=34.49 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=12.7
Q ss_pred ccceEeecCcCCCcccchhhhccCCCCcCEEee
Q 045942 12 HLRRVVIGEITQFLELPQWLLQCCTDTLQSLII 44 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l 44 (131)
.|+.+.+-. .+..+....+ ....+|+.+.+
T Consensus 241 ~L~~i~lp~--~v~~I~~~aF-~~~~~l~~i~l 270 (379)
T 4h09_A 241 ALDEIAIPK--NVTSIGSFLL-QNCTALKTLNF 270 (379)
T ss_dssp SCCEEEECT--TCCEECTTTT-TTCTTCCEEEE
T ss_pred cceEEEcCC--CccEeCcccc-ceeehhccccc
Confidence 455555532 2334433222 33444555544
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.18 E-value=0.55 Score=34.27 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=24.1
Q ss_pred cCCCCcCEEeecCCCCcccCCC-CCCCcccccccccccccccCcCCCC-CCCCCCcCeEeec
Q 045942 34 CCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIARCPKLSSLPED-MHHVTTLKSLAIA 93 (131)
Q Consensus 34 ~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~ 93 (131)
...++|+.+.+.+ .+..++. .+.++++|+.+.+.. .++.++.. +..+++|+.+.+.
T Consensus 317 ~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 317 ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 3444555554432 2333432 234445555554432 24444332 3444455555543
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.20 E-value=0.41 Score=34.98 Aligned_cols=58 Identities=7% Similarity=0.031 Sum_probs=35.0
Q ss_pred CCCC-ccceEeecCcCCCcccchhhhccCCCCcCEEeecCCCCcccCCC-CCCCccccccccccc
Q 045942 8 NTRP-HLRRVVIGEITQFLELPQWLLQCCTDTLQSLIIVDCPNFMALPG-SLKDLEALETLVIAR 70 (131)
Q Consensus 8 i~~l-~L~~L~i~~c~~l~~lp~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~sL~~L~l~~ 70 (131)
+.+. +|+.+.|.+ .++.+....| ..+++|+.+.+.. .+..++. .+..+++|+.+.+..
T Consensus 316 F~~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 FESCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hcCCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 4444 666666632 3556654443 5677888887753 3566653 466677777777643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.68 E-value=2.5 Score=30.36 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=4.6
Q ss_pred CCCCcCEEeec
Q 045942 35 CTDTLQSLIIV 45 (131)
Q Consensus 35 ~l~~L~~L~l~ 45 (131)
..++|+.+.+.
T Consensus 284 ~c~~L~~i~l~ 294 (379)
T 4h09_A 284 GCSNLTKVVMD 294 (379)
T ss_dssp TCTTCCEEEEC
T ss_pred ccccccccccc
Confidence 33444444443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.72 E-value=0.36 Score=32.51 Aligned_cols=80 Identities=13% Similarity=0.190 Sum_probs=49.2
Q ss_pred ccceEeecCcCCCcc-----cchhhhccCCCCcCEEeecCCCCccc-----CCCCCCCcccccccccccccccC-----c
Q 045942 12 HLRRVVIGEITQFLE-----LPQWLLQCCTDTLQSLIIVDCPNFMA-----LPGSLKDLEALETLVIARCPKLS-----S 76 (131)
Q Consensus 12 ~L~~L~i~~c~~l~~-----lp~~~~~~~l~~L~~L~l~~~~~l~~-----lp~~l~~l~sL~~L~l~~c~~l~-----~ 76 (131)
.|++|+++++..+.. +-+.+ ..-++|+.|++++| .+.. +-+.+..-++|++|++.++. ++ .
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL--~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~a 117 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAA--CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR 117 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHH--TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHH--hhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHH
Confidence 688888876534432 33444 55678999999888 3432 22233345788889887753 32 2
Q ss_pred CCCCCCCCCCcCeEeecCC
Q 045942 77 LPEDMHHVTTLKSLAIAEC 95 (131)
Q Consensus 77 lp~~~~~l~~L~~L~i~~~ 95 (131)
+-+.+..-++|++|++.++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2233444457889988754
Done!