BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045943
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 324 bits (830), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 164/250 (65%), Positives = 194/250 (77%), Gaps = 2/250 (0%)
Query: 2 ASILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPS-KSQLLDHFKNLGVKIVVGD 60
+ IL IG TGYIG+ + +AS+ GHPTF+LVREST S S K+QLL+ FK G IV G
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 64
Query: 61 VLNHESLVKAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGA 120
+ +H SLV+A+K VDVVISTVG + QV II AIKE G VKRFFPSEFGNDVD VH A
Sbjct: 65 IDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVH-A 123
Query: 121 VEPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDG 180
VEP KS ++VKAK+RRA+EAEGIPYTYV S F GYFL +L Q G TAPPRDKVVI GDG
Sbjct: 124 VEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDG 183
Query: 181 NPKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREY 240
N + V+ KE+DIGT+TIKAVDDPRTLNK LY++ P N S N+LV+LWE+KI KTLE+ Y
Sbjct: 184 NARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAY 243
Query: 241 VSEEQLLKNI 250
V EE++LK I
Sbjct: 244 VPEEEVLKLI 253
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 300 bits (767), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 149/250 (59%), Positives = 195/250 (78%), Gaps = 3/250 (1%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRES-TVSGP-SKSQLLDHFKNLGVKIVVGDV 61
IL +G TG IG+ IV AS+KAG+PT+ LVR++ T + P +K +L+D++++LGV ++ GD+
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 62 LNHESLVKAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGAV 121
+HE+LVKAIKQVD+VI G L+ DQVKII AIKEAGNVK+FFPSEFG DVDR H AV
Sbjct: 65 NDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDR-HDAV 123
Query: 122 EPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGN 181
EP + ++ KA IRR +EAEG+PYTY+ + F GYFL NL Q AT PPRDKVVI GDGN
Sbjct: 124 EPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGDGN 183
Query: 182 PKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYV 241
K Y E D+GT+TI+A +DP TLNK ++I+ P N + N++++LWE+KIGKTLE+ YV
Sbjct: 184 VKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYV 243
Query: 242 SEEQLLKNIQ 251
SEEQ+LK+IQ
Sbjct: 244 SEEQVLKDIQ 253
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 260 bits (665), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 128/255 (50%), Positives = 178/255 (69%), Gaps = 5/255 (1%)
Query: 2 ASILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDV 61
+ +L +GGTGYIGK IV AS+ GHPT+VL R VS K Q+L +FK LG K++ +
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASL 64
Query: 62 LNHESLVKAIKQVDVVISTVGHALLA----DQVKIIAAIKEAGNVKRFFPSEFGNDVDRV 117
+H+ LV A+KQVDVVIS + +L+ +Q+K++ AIKEAGN+KRF PSEFG D D +
Sbjct: 65 DDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIM 124
Query: 118 HGAVEPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQ-PGATAPPRDKVVI 176
A++P T+ K K+RRA+EA IPYTYV S F GYF +L Q G PPRDKV+I
Sbjct: 125 EHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLI 184
Query: 177 FGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTL 236
+GDGN K ++ EDD+GTYTIK++DDP+TLNK +YI+PP NI S +++ +WER + L
Sbjct: 185 YGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNL 244
Query: 237 EREYVSEEQLLKNIQ 251
++ Y+S + L +++
Sbjct: 245 DKIYISSQDFLADMK 259
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 223 bits (568), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 113/249 (45%), Positives = 159/249 (63%), Gaps = 2/249 (0%)
Query: 1 MASILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTV-SGPSKSQLLDHFKNLGVKIVVG 59
M I+ GGTGYIGKF+V AS+ HPTF+ R T S PS QL + F+++GV I+ G
Sbjct: 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEG 63
Query: 60 DVLNHESLVKAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHG 119
++ HE +V +KQVD+VIS + +++ Q+ II AIK AGN+KRF PS+FG + DR+
Sbjct: 64 EMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIK- 122
Query: 120 AVEPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGD 179
+ P +S + K IRRA+EA +PYTYV + F YF+ LL P D +VI+G
Sbjct: 123 PLPPFESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVIYGT 182
Query: 180 GNPKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLERE 239
G K V N E+DI YTIK DPR N+ + +PP NI S N+L+SLWE K G + ++
Sbjct: 183 GETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKV 242
Query: 240 YVSEEQLLK 248
++ +EQL++
Sbjct: 243 HMPDEQLVR 251
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 201 bits (510), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 161/246 (65%), Gaps = 8/246 (3%)
Query: 2 ASILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDV 61
+ IL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F++LG IV G++
Sbjct: 8 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGEL 63
Query: 62 LNHESLVKAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGAV 121
HE LV+ +K+VDVVIS + + DQ KI+ AIK AGN+KRF PS+FG + DR++ A+
Sbjct: 64 DEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN-AL 122
Query: 122 EPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGN 181
P ++ + K IRRA+E IPYTYV + F YF+ LL+P P+D++ ++G G
Sbjct: 123 PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 179
Query: 182 PKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYV 241
K N E DIG YTIK DPR LN+ + +P NI + +L+S WE+KIGK ++ +V
Sbjct: 180 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 239
Query: 242 SEEQLL 247
EE+++
Sbjct: 240 PEEEIV 245
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 201 bits (510), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 161/246 (65%), Gaps = 8/246 (3%)
Query: 2 ASILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDV 61
+ IL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F++LG IV G++
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGEL 67
Query: 62 LNHESLVKAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGAV 121
HE LV+ +K+VDVVIS + + DQ KI+ AIK AGN+KRF PS+FG + DR++ A+
Sbjct: 68 DEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN-AL 126
Query: 122 EPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGN 181
P ++ + K IRRA+E IPYTYV + F YF+ LL+P P+D++ ++G G
Sbjct: 127 PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 183
Query: 182 PKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYV 241
K N E DIG YTIK DPR LN+ + +P NI + +L+S WE+KIGK ++ +V
Sbjct: 184 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 243
Query: 242 SEEQLL 247
EE+++
Sbjct: 244 PEEEIV 249
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 161/246 (65%), Gaps = 8/246 (3%)
Query: 2 ASILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDV 61
+ IL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F++LG IV G++
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGEL 67
Query: 62 LNHESLVKAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGAV 121
HE LV+ +K+VDVVIS + + DQ KI+ AIK AGN+KRF PS+FG + DR++ A+
Sbjct: 68 DEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN-AL 126
Query: 122 EPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGN 181
P ++ + + IRRA+E IPYTYV + F YF+ LL+P P+D++ ++G G
Sbjct: 127 PPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 183
Query: 182 PKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYV 241
K N E DIG YTIK DPR LN+ + +P NI + +L+S WE+KIGK ++ +V
Sbjct: 184 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 243
Query: 242 SEEQLL 247
EE+++
Sbjct: 244 PEEEIV 249
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 160/246 (65%), Gaps = 8/246 (3%)
Query: 2 ASILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDV 61
+ IL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F++LG IV G++
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGEL 67
Query: 62 LNHESLVKAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGAV 121
HE LV+ +K+VDVVIS + DQ KI+ AIK AGN+KRF PS+FG + DR++ A+
Sbjct: 68 DEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN-AL 126
Query: 122 EPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGN 181
P ++ + K IRRA+E IPYTYV + F YF+ LL+P P+D++ ++G G
Sbjct: 127 PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 183
Query: 182 PKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYV 241
K N E DIG YTIK DPR LN+ + +P NI + +L+S WE+KIGK ++ +V
Sbjct: 184 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 243
Query: 242 SEEQLL 247
EE+++
Sbjct: 244 PEEEIV 249
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 153/246 (62%), Gaps = 4/246 (1%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDVLN 63
+L G TG+IG+F+ AS+ A PT++L R S PSK+++ ++ G IV G +
Sbjct: 13 VLIAGATGFIGQFVATASLDAHRPTYILARPGPRS-PSKAKIFKALEDKGAIIVYGLINE 71
Query: 64 HESLVKAIKQ--VDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGAV 121
E++ K +K+ +D+V+STVG + DQ+ ++ A+K G +KRF PSEFG+DV+R V
Sbjct: 72 QEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRAD-PV 130
Query: 122 EPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGN 181
EP + Y K ++R+ VE GIP+TY+ + N + P PP D I+GDGN
Sbjct: 131 EPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGN 190
Query: 182 PKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYV 241
KA + DIG +T+K VDD RTLNK+++ +P N + N+L S+WE+KIG+TL R V
Sbjct: 191 VKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTV 250
Query: 242 SEEQLL 247
+E+ LL
Sbjct: 251 TEDDLL 256
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 55 KIVVGDVLNHESLVKAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVKRFF-------- 106
+I+ GDVLNH +L +A + D+V + + L Q + A +A +VKR
Sbjct: 70 QIIXGDVLNHAALKQAXQGQDIVYANLTGEDLDIQANSVIAAXKACDVKRLIFVLSLGIY 129
Query: 107 ---PSEFGNDVDRVHGA-VEPTKSTYDVKAKIRRAVEAEGIPYTYVESYFF 153
P +F + V G ++P + D A+EA G+ YT + +
Sbjct: 130 DEVPGKFVEWNNAVIGEPLKPFRRAAD-------AIEASGLEYTILRPAWL 173
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 36/254 (14%)
Query: 3 SILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDVL 62
SI G TG +G +++ + A P ++ + V K+ L + GV++ GD
Sbjct: 2 SIAVTGATGQLGGLVIQ-HLXAAVPASQII--AIVRNVEKASTL---ADQGVEVRHGDYN 55
Query: 63 NHESLVKAIKQVDVVISTVG-----HALLADQVKIIAAIKEAGNVKRF------FPSEFG 111
ESL KA V ++ G L+ ++ A ++AG VK F E
Sbjct: 56 QPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAG-VKHIAYTGYAFAEESI 114
Query: 112 NDVDRVHGAVEPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPR 171
+ VH A E A+ IPYT++ + + +F+ L+ A+
Sbjct: 115 IPLAHVHLATE-------------YAIRTTNIPYTFLRNALYTDFFVNEGLR--ASTESG 159
Query: 172 DKVVIFGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERK 231
V G G +V E + T+ + NL P ++F++L +
Sbjct: 160 AIVTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQP---WTFDELAQILSEV 216
Query: 232 IGKTLEREYVSEEQ 245
GK + + VS E+
Sbjct: 217 SGKKVVHQPVSFEE 230
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 36/254 (14%)
Query: 3 SILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDVL 62
SI G TG +G +++ +K + ++ V S L D GV++ GD
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE--KASTLADQ----GVEVRHGDYN 55
Query: 63 NHESLVKAIKQVDVVISTVG-----HALLADQVKIIAAIKEAGNVKRF------FPSEFG 111
ESL KA V ++ G L+ ++ A ++AG VK F E
Sbjct: 56 QPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAG-VKHIAYTGYAFAEESI 114
Query: 112 NDVDRVHGAVEPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPR 171
+ VH A E A+ IPYT++ + + +F+ L+ A+
Sbjct: 115 IPLAHVHLATE-------------YAIRTTNIPYTFLRNALYTDFFVNEGLR--ASTESG 159
Query: 172 DKVVIFGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERK 231
V G G +V E + T+ + NL P ++F++L +
Sbjct: 160 AIVTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQP---WTFDELAQILSEV 216
Query: 232 IGKTLEREYVSEEQ 245
GK + + VS E+
Sbjct: 217 SGKKVVHQPVSFEE 230
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 36/254 (14%)
Query: 3 SILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDVL 62
SI G TG +G +++ +K + ++ V S L D GV++ GD
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE--KASTLADQ----GVEVRHGDYN 55
Query: 63 NHESLVKAIKQVDVVISTVG-----HALLADQVKIIAAIKEAGNVKRF------FPSEFG 111
ESL KA V ++ G L+ ++ A ++AG VK F E
Sbjct: 56 QPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAG-VKHIAYTGYAFAEESI 114
Query: 112 NDVDRVHGAVEPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPR 171
+ VH A E A+ IPYT++ + + +F+ L+ A+
Sbjct: 115 IPLAHVHLATE-------------YAIRTTNIPYTFLRNALYTDFFVNEGLR--ASTESG 159
Query: 172 DKVVIFGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERK 231
V G G +V E + T+ + NL P ++F++L +
Sbjct: 160 AIVTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQP---WTFDELAQILSEV 216
Query: 232 IGKTLEREYVSEEQ 245
GK + + VS E+
Sbjct: 217 SGKKVVHQPVSFEE 230
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN
IV Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME
TERNARY Complex
Length = 206
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 8 GGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDVLNHESL 67
G TG G + +V+AG+ VLVR+S+ PS+ H +VVGDVL +
Sbjct: 10 GATGQTGLTTLAQAVQAGYEVTVLVRDSS-RLPSEGPRPAH-------VVVGDVLQAADV 61
Query: 68 VKAIKQVDVVISTVG 82
K + D VI +G
Sbjct: 62 DKTVAGQDAVIVLLG 76
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVK---IVVGD 60
+L GG+GYIG ++ GH +L SK +L + LG K V GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 VLNHESLVKAI---KQVDVVISTVGHALLADQV---------------KIIAAIKEAGNV 102
+ N E+L+ I +D VI G + + V ++I+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 103 KRFF 106
K F
Sbjct: 117 KNFI 120
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVK---IVVGD 60
+L GG+GYIG ++ GH +L SK +L + LG K V GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 VLNHESLVKAI---KQVDVVISTVGHALLADQV---------------KIIAAIKEAGNV 102
+ N E+L+ I +D VI G + + V ++I+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 103 KRFF 106
K F
Sbjct: 117 KNFI 120
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVK---IVVGD 60
+L GG+GYIG ++ GH +L SK +L + LG K V GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 VLNHESLVKAI---KQVDVVISTVGHALLADQV---------------KIIAAIKEAGNV 102
+ N E+L+ I +D VI G + + V ++I+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 103 KRFF 106
K F
Sbjct: 117 KNFI 120
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVK---IVVGD 60
+L GG+GYIG ++ GH +L SK +L + LG K V GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 VLNHESLVKAI---KQVDVVISTVGHALLADQV---------------KIIAAIKEAGNV 102
+ N E+L+ I +D VI G + + V ++I+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 103 KRFF 106
K F
Sbjct: 117 KNFI 120
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVK---IVVGD 60
+L GG+GYIG ++ GH +L SK +L + LG K V GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 VLNHESLVKAI---KQVDVVISTVGHALLADQV---------------KIIAAIKEAGNV 102
+ N E+L+ I +D VI G + + V ++I+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 103 KRFF 106
K F
Sbjct: 117 KNFI 120
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVK---IVVGD 60
+L GG+GYIG ++ GH +L SK +L + LG K V GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 VLNHESLVKAI---KQVDVVISTVGHALLADQV---------------KIIAAIKEAGNV 102
+ N E+L+ I +D VI G + + V ++I+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 103 KRFF 106
K F
Sbjct: 117 KNFI 120
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVK---IVVGD 60
+L GG+GYIG ++ GH +L SK +L + LG K V GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 VLNHESLVKAI---KQVDVVISTVGHALLADQV---------------KIIAAIKEAGNV 102
+ N E+L+ I +D VI G + + V ++I+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 103 KRFF 106
K F
Sbjct: 117 KNFI 120
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVK---IVVGD 60
+L GG+GYIG ++ GH +L SK +L + LG K V GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 VLNHESLVKAI---KQVDVVISTVGHALLADQV---------------KIIAAIKEAGNV 102
+ N E+L+ I +D VI G + + V ++I+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 103 KRFF 106
K F
Sbjct: 117 KNFI 120
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVK---IVVGD 60
+L GG+GYIG ++ GH +L SK +L + LG K V GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 VLNHESLVKAI---KQVDVVISTVGHALLADQV---------------KIIAAIKEAGNV 102
+ N E+L+ I +D VI G + + V ++I+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 103 KRFF 106
K F
Sbjct: 117 KNFI 120
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVK---IVVGD 60
+L GG+GYIG ++ GH +L SK +L + LG K V GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEGD 58
Query: 61 VLNHESLVKAI---KQVDVVISTVGHALLADQV---------------KIIAAIKEAGNV 102
+ N E+L+ I +D VI G + + V ++I+A++ A NV
Sbjct: 59 IRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANV 116
Query: 103 KRFF 106
K F
Sbjct: 117 KNFI 120
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 3 SILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDVL 62
+IL GGTG GK V + + ++V +S++ F + ++ +GDV
Sbjct: 23 TILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR--DELKQSEMAMEFNDPRMRFFIGDVR 80
Query: 63 NHESLVKAIKQVDVVI 78
+ E L A++ VD+ I
Sbjct: 81 DLERLNYALEGVDICI 96
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus By
Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus By
Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 75/177 (42%), Gaps = 42/177 (23%)
Query: 18 VEASVKAGHPTFVLVRESTVSGPSKSQL---------------LDHFKNLGVK------- 55
+ ASV+A H VL + ++GP+ + L + F N ++
Sbjct: 883 IAASVQATHVAVVLYQSGVINGPASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYH 942
Query: 56 ---IVVGDVLNHESLVK---AIKQVDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSE 109
+ + D+ + ++ A++Q+ ++ T+ + + ++ IA I + + ++
Sbjct: 943 ESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDS------TD 996
Query: 110 FGNDVDRVHGAVEPTKSTYDVKAKIRRAVEAEGIPYTY-----VESYFFDGYFLPNL 161
+G R G + T+S A+IRR + +G Y +E++ + YFL L
Sbjct: 997 YGKLTLRFLGTL--TRSLKMQNAQIRR-IRPDGTVLRYDDQIDIEAFRWSRYFLDEL 1050
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 7 IGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDVLNHES 66
+G TG +G A AGH ++ R S S+ Q L + + + V ++L+H
Sbjct: 19 LGATGLLGHHAARAIRAAGHDLVLIHRPS-----SQIQRLAYLEP---ECRVAEMLDHAG 70
Query: 67 LVKAIKQVDVVISTVGH 83
L +A++ +D VI + G+
Sbjct: 71 LERALRGLDGVIFSAGY 87
>pdb|4E4S|A Chain A, Crystal Structure Of Pika Gitrl
pdb|4E4S|B Chain B, Crystal Structure Of Pika Gitrl
pdb|4E4S|C Chain C, Crystal Structure Of Pika Gitrl
pdb|4E4S|D Chain D, Crystal Structure Of Pika Gitrl
pdb|4E4S|E Chain E, Crystal Structure Of Pika Gitrl
pdb|4E4S|F Chain F, Crystal Structure Of Pika Gitrl
Length = 125
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 175 VIFGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGK 234
I+G P Y K D +TL + IQ GNIY FN G
Sbjct: 44 AIYGRVTPNPTYKGFAPFEVQLCKNKDAIQTLTDSSKIQNLGNIYEFN---------AGD 94
Query: 235 TLEREYVSEEQLLK 248
T+E + S++Q+LK
Sbjct: 95 TIELRFNSDDQVLK 108
>pdb|1OOP|A Chain A, The Crystal Structure Of Swine Vesicular Disease Virus
Length = 283
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 146 TYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGNPKAV----YNKEDDIGTYTIKAVD 201
T V SY + P++ +APPR V G GN ++ + + D GTY I ++
Sbjct: 154 TKVNSYSWQTSTNPSVFWTEGSAPPRMSVPFIGIGNAYSMFYDGWARFDKQGTYGISTLN 213
Query: 202 DPRTL 206
+ TL
Sbjct: 214 NMGTL 218
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 21 SVKAGHPTFVLV---RESTVSGPSKSQLLDHFKNLGVKIVVGD 60
S+++G P VLV RE V+GP + L + G +V+GD
Sbjct: 1627 SIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGD 1669
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 21 SVKAGHPTFVLV---RESTVSGPSKSQLLDHFKNLGVKIVVGD 60
S+++G P VLV RE V+GP + L + G +V+GD
Sbjct: 1627 SIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGD 1669
>pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS.
Northeast Structural Genomics Target Hr1979
Length = 339
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 21 SVKAGHPTFVLV---RESTVSGPSKSQLLDHFKNLGVKIVVGD 60
S+++G P VLV RE V+GP + L + G +V+GD
Sbjct: 231 SIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGD 273
>pdb|2I7A|A Chain A, Domain Iv Of Human Calpain 13
Length = 174
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 206 LNKNLYIQPPGNIYSFND---LVSLWERKIGKTLERE 239
LN+ L PPG+++S ++ LV+L E K+ L++E
Sbjct: 30 LNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQE 66
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose
4,6-Dehydratase) From Streptomyces Venezuelae With Nad
And Tyd Bound
Length = 337
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTF----VLVRESTVSGPSKSQLLDHFKNLGVKIVVG 59
+L GG G+IG V + +P V+V +S +++ L + ++ V G
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 60 DVLNHESLVKAIKQVDVVI 78
D+ + L + ++ VD ++
Sbjct: 63 DIRDAGLLARELRGVDAIV 81
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTF----VLVRESTVSGPSKSQLLDHFKNLGVKIVVG 59
+L GG G+IG V + +P V+V +S +++ L + ++ V G
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 60 DVLNHESLVKAIKQVDVVI 78
D+ + L + ++ VD ++
Sbjct: 63 DIRDAGLLARELRGVDAIV 81
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 8 GGTGYIGKFIVEASVKAGHPTFVLVR 33
GGTG++G+++VE+ G+ +L R
Sbjct: 9 GGTGFLGQYVVESIKNDGNTPIILTR 34
>pdb|2R30|A Chain A, Crystal Structure Of Human Gitrl Mutant
Length = 130
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 23/106 (21%)
Query: 158 LPNLLQPGATAPPR-DKV-------------VIFGDGNPKAVYNKEDDIGTYTIKAVDDP 203
LP+ Q ++ PP +KV +I+G P A YN K D
Sbjct: 18 LPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIYGQVAPNAAYNDVAPFEVRLYKNKDMI 77
Query: 204 RTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYVSEEQLLKN 249
+TL IQ G Y E +G T++ + SE Q+LKN
Sbjct: 78 QTLTNKSKIQNVGGTY---------ELHVGDTIDLIFNSEHQVLKN 114
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 4 ILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGD 60
+L GG GYIG V A ++ + + V+V +S V KS ++ +N+ K+ D
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIV-DSLVGTHGKSDHVETRENVARKLQQSD 60
>pdb|1MQT|A Chain A, Swine Vesicular Disease Virus Coat Protein
Length = 283
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 146 TYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGNPKAV----YNKEDDIGTYTIKAVD 201
T V SY + P++ APPR + G GN ++ + + D GTY I ++
Sbjct: 154 TKVNSYSWQTSTNPSVFWTEGNAPPRMSIPFIGIGNAYSMFYDGWARFDKQGTYGISTLN 213
Query: 202 DPRTL 206
TL
Sbjct: 214 SMGTL 218
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 50/129 (38%), Gaps = 21/129 (16%)
Query: 24 AGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDVLNHESLVKAIKQVDVVISTVGH 83
AG V+ R + + P LL N V I N LVK Q D+++ VG
Sbjct: 178 AGKHAVVVGRSAILGKPMAMMLLQ--ANATVTICHSRTQNLPELVK---QADIIVGAVGK 232
Query: 84 ALL--ADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGAVEPTKSTY----------DVK 131
A L D +K A + +AG F P + G D +E S Y +
Sbjct: 233 AELIQKDWIKQGAVVVDAG----FHPRDGGGVGDIQLQGIEEIASAYTPVPGGVGPMTIT 288
Query: 132 AKIRRAVEA 140
IR+ VEA
Sbjct: 289 TLIRQTVEA 297
>pdb|2WST|A Chain A, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|B Chain B, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|C Chain C, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|D Chain D, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|E Chain E, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|F Chain F, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
Length = 208
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 167 TAP-PRDKVVIFGDGNPKAVY------NKEDDIGTYTIK-AVDDP---RTLNKNLYIQPP 215
T P P V G+ +P + IGT +++ ++ +P +TL NLY
Sbjct: 40 TGPAPEANVTFSGENSPSGILRLCLSRTGGTVIGTLSVQGSLTNPSTGQTLGMNLYFDAD 99
Query: 216 GNIYSFNDLV-SLWERKIGKTLEREYVSEEQLLKNI 250
GN+ S ++LV W K TL + + L+ N+
Sbjct: 100 GNVLSESNLVRGSWGMKDQDTLVTPIANGQYLMPNL 135
>pdb|2R32|A Chain A, Crystal Structure Of Human Gitrl Variant
Length = 166
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 23/106 (21%)
Query: 158 LPNLLQPGATAPPR-DKV-------------VIFGDGNPKAVYNKEDDIGTYTIKAVDDP 203
LP+ Q ++ PP +KV +I+G P A YN K D
Sbjct: 54 LPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIYGQVAPNANYNDVAPFEVRLYKNKDMI 113
Query: 204 RTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYVSEEQLLKN 249
+TL IQ G Y E +G T++ + SE Q+LKN
Sbjct: 114 QTLTNKSKIQNVGGTY---------ELHVGDTIDLIFNSEHQVLKN 150
>pdb|2IAB|A Chain A, Crystal Structure Of A Protein With Fmn-Binding Split
Barrel Fold (Np_828636.1) From Streptomyces Avermitilis
At 2.00 A Resolution
pdb|2IAB|B Chain B, Crystal Structure Of A Protein With Fmn-Binding Split
Barrel Fold (Np_828636.1) From Streptomyces Avermitilis
At 2.00 A Resolution
Length = 155
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 129 DVKAKIRRAVEAEGIPYTYVESYFFDG-YFL----------PNLLQPG----ATAPPRDK 173
DV A + A G PY SY +DG FL NL + G P RD
Sbjct: 24 DVDAWVSTAGADGGAPYLVPLSYLWDGETFLVATPAASPTGRNLSETGRVRLGIGPTRDL 83
Query: 174 VVIFGDGNPKAVYNKEDDIG-TYTIKAVDDPRTLNKN-LYIQ 213
V++ G P D +G T+ K DPR L + LY +
Sbjct: 84 VLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTSYLYFR 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,854,318
Number of Sequences: 62578
Number of extensions: 344193
Number of successful extensions: 1168
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 70
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)