BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045945
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
pdb|3P63|B Chain B, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2
Loop
Length = 96
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 34 SLVSRSVSKAFGLKSSSFKVSAM--AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLD 91
+L++ + +K + + + A A LPYSCRAGACSTCAG ++SG+VDQSD SFLD
Sbjct: 6 TLINPTGNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLD 65
Query: 92 DNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
D+Q+E GYVLTC+AYP SDCVI THKE EL
Sbjct: 66 DDQIEAGYVLTCVAYPTSDCVIETHKEEEL 95
>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
pdb|1RFK|B Chain B, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic
Cyanobacterium Mastigocladus Laminosus
Length = 98
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 55/62 (88%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
LPYSCRAGACSTCAG ++SG+VDQSD SFLDD+Q+E GYVLTC+AYP SDCVI THKE
Sbjct: 36 DLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEE 95
Query: 120 EL 121
EL
Sbjct: 96 EL 97
>pdb|1FXA|A Chain A, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1FXA|B Chain B, Crystallization And Structure Determination To
2.5-Angstroms Resolution Of The Oxidized [2fe-2s]
Ferredoxin Isolated From Anabaena 7120
pdb|1QT9|A Chain A, Oxidized [2fe-2s] Ferredoxin From Anabaena Pcc7119
pdb|1CZP|A Chain A, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1CZP|B Chain B, Anabaena Pcc7119 [2fe-2s] Ferredoxin In The Reduced And
Oxixized State At 1.17 A
pdb|1EWY|C Chain C, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 98
Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35 YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
+L
Sbjct: 95 EDL 97
>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k
Length = 98
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35 YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
+L
Sbjct: 95 KDL 97
>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a
pdb|1QOG|B Chain B, Ferredoxin Mutation S47a
Length = 98
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
Y LP+SCRAGAC+TCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35 YDLPFSCRAGACATCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
+L
Sbjct: 95 EDL 97
>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin
And Ferredoxin:thioredoxin Reductase
pdb|2PVO|D Chain D, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 96
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 54/62 (87%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
+LPYSCRAGACSTCAG + +GSVDQSD SFLDD+Q+E GYVLTC+AYP SDC I THKE
Sbjct: 34 ELPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEE 93
Query: 120 EL 121
+L
Sbjct: 94 DL 95
>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k
pdb|1QOF|B Chain B, Ferredoxin Mutation Q70k
Length = 98
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+++E GYVLTC+AYP SD VI THKE
Sbjct: 35 YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDKIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
+L
Sbjct: 95 EDL 97
>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|1DOY|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And
Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis
Sp. Pcc 6803
pdb|2KAJ|A Chain A, Nmr Structure Of Gallium Substituted Ferredoxin
Length = 96
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 53/62 (85%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
LPYSCRAGACSTCAG + +GSVDQSD SFLDD+Q+E GYVLTC+AYP SDC I THKE
Sbjct: 34 DLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEE 93
Query: 120 EL 121
+L
Sbjct: 94 DL 95
>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k
Length = 98
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THK+
Sbjct: 35 YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKK 94
Query: 119 SEL 121
+L
Sbjct: 95 EDL 97
>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803
Length = 97
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 53/62 (85%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
LPYSCRAGACSTCAG + +GSVDQSD SFLDD+Q+E GYVLTC+AYP SDC I THKE
Sbjct: 35 DLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEE 94
Query: 120 EL 121
+L
Sbjct: 95 DL 96
>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k
pdb|1QOB|B Chain B, Ferredoxin Mutation D62k
Length = 98
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
Y LP+SCRAGACSTCAG +VSG+VDQS SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35 YDLPFSCRAGACSTCAGKLVSGTVDQSKQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
+L
Sbjct: 95 EDL 97
>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant
Length = 98
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
Y LP+SCRAGACSTCAG +VSG+VDQSD SFLD +Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35 YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDKDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
+L
Sbjct: 95 EDL 97
>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s
pdb|1QOA|B Chain B, Ferredoxin Mutation C49s
Length = 98
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
Y LP+SCRAGACST AG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35 YDLPFSCRAGACSTSAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
+L
Sbjct: 95 EDL 97
>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
pdb|1FRR|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum
Arvense At 1.8 Angstroms Resolution
Length = 95
Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 57 AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTH 116
A Y LP+SCRAGACS+C G +VSGSVD+S+GSFLDD QME+G+VLTCIA P+SD VI TH
Sbjct: 30 AGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETH 89
Query: 117 KESEL 121
KE EL
Sbjct: 90 KEEEL 94
>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elongatus
pdb|2CJN|A Chain A, Structure Of Ferredoxin, Nmr, Minimized Average Structure
pdb|2CJO|A Chain A, Structure Of Ferredoxin, Nmr, 10 Structures
Length = 97
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 65/97 (67%), Gaps = 4/97 (4%)
Query: 25 KFPLVKSPGSLVSRSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQ 84
K LV+ GS + V + V+ LP+SCRAGACSTCAG ++ G VDQ
Sbjct: 4 KVTLVRPDGSETTIDVPE----DEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQ 59
Query: 85 SDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
SD SFLDD+Q+EKG+VLTC+AYP+SDC I T++E EL
Sbjct: 60 SDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 96
>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina
Platensis Refined At 2.5 Angstroms Resolution:
Structural Comparisons Of Plant-Type Ferredoxins And An
Electrostatic Potential Analysis
Length = 98
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 52/62 (83%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
LPYSCRAGACSTCAG + SG++DQSD SFLDD+Q+E GYVLTC+AYP SDC I TH+E
Sbjct: 36 DLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEE 95
Query: 120 EL 121
L
Sbjct: 96 GL 97
>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin
pdb|3B2G|B Chain B, Leptolyngbya Boryana Ferredoxin
Length = 98
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 53/62 (85%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
LPYSCRAGACSTCAG + +G+VDQSD SFLDD+Q++ GYVLTC+AYP SDC I TH+E
Sbjct: 36 DLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEE 95
Query: 120 EL 121
+L
Sbjct: 96 DL 97
>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
pdb|3AB5|B Chain B, Crystal Structure Of The 2fe 2s Ferredoxin From
Cyanidioschyzon Merolae
Length = 97
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
LPYSCRAGACSTCAG +V GSVDQSD SFLD++Q+ KG++LTC+AYP SDCVI TH+E
Sbjct: 36 LPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEDQISKGFILTCVAYPTSDCVIQTHQEEA 95
Query: 121 L 121
L
Sbjct: 96 L 96
>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E. Arvense
Length = 93
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 53/61 (86%)
Query: 61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
LP SC+AGACSTC G +VSG+VDQS+GSFLDD Q+E+GYVLTCIA P+SD VI THKE E
Sbjct: 33 LPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDE 92
Query: 121 L 121
L
Sbjct: 93 L 93
>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s]
Ferredoxin, Nmr, 18 Structures
Length = 96
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 52/62 (83%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
+PYSCRAG+CS+CAG +VSGS+DQSD SFLDD QM+ GYVLTC AYP SD VI THKE
Sbjct: 34 DIPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEE 93
Query: 120 EL 121
E+
Sbjct: 94 EI 95
>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|3B2F|A Chain A, Maize Ferredoxin 1
pdb|3B2F|B Chain B, Maize Ferredoxin 1
Length = 98
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 51/62 (82%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
LPYSCRAG+CS+CAG +VSGSVDQSD S+LDD Q+ G+VLTC AYP SD VI THKE
Sbjct: 34 DLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEE 93
Query: 120 EL 121
EL
Sbjct: 94 EL 95
>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|B Chain B, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|C Chain C, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
pdb|3AV8|D Chain D, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From
Aphanothece Sacrum At 1.46 A Resolution
Length = 97
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSV-DQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
LPYSCRAGACSTCAG +VSG DQSD SFLDD+Q++ GY+LTC+AYP DCVI THKE
Sbjct: 34 DLPYSCRAGACSTCAGKLVSGPAPDQSDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKE 93
Query: 119 SEL 121
L
Sbjct: 94 EAL 96
>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca
Length = 94
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 50/61 (81%)
Query: 61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
LPYSCRAGACS+CAG + SG VDQSD SFLDD QM KG+VLTC+AYP SD I TH+E+
Sbjct: 33 LPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAA 92
Query: 121 L 121
L
Sbjct: 93 L 93
>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|B Chain B, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|C Chain C, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
pdb|1FXI|D Chain D, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green
Alga Aphanothece Sacrum At 2.2 Angstroms Resolution
Length = 96
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 48/62 (77%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
LPYSCRAGACSTCAG +VSG D SFLDD+Q++ GY+LTC+AYP DCVI THKE
Sbjct: 34 DLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEE 93
Query: 120 EL 121
L
Sbjct: 94 AL 95
>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
pdb|1IUE|B Chain B, Crystal Structure Analysis Of Ferredoxin From Plasmodium
Falciparum
Length = 98
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
+LPYSCR G+CSTCA +V G VD D S+LD+ Q++K Y+L C YPKSDCVI THKE
Sbjct: 34 ELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPKSDCVIETHKED 93
Query: 120 ELN 122
EL+
Sbjct: 94 ELH 96
>pdb|1A70|A Chain A, Spinach Ferredoxin
Length = 97
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
LPYSCRAG+CS+CAG + +GS++Q D SFLDD+Q+++G+VLTC AYP SD I THK+ E
Sbjct: 35 LPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEE 94
Query: 121 L 121
L
Sbjct: 95 L 95
>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant,
Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120
Determined To 1.7 Angstroms Resolution
Length = 98
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
+LP+SC +G+CS+C G +V G VDQSD FLDD QM KG+ L C+ YP+S+C I TH+E
Sbjct: 36 ELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQE 94
>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui
Length = 128
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQME-KGYVLTCIAYPKSDCV--IYT 115
Y P+SCRAGAC+ CA +++ G +D L D ++E K LTCI P +D V +Y
Sbjct: 57 YDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYN 116
Query: 116 HK 117
K
Sbjct: 117 AK 118
>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYV-LTCIAYPKSDCV--IYT 115
Y P+SCRAGAC+ CA ++ G +D L D ++E+ V LTCI P +D V +Y
Sbjct: 57 YDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVRLTCIGSPAADEVKIVYN 116
Query: 116 HK 117
K
Sbjct: 117 AK 118
>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum
Length = 128
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYV-LTCIAYPKSDCVIYTHK 117
Y P+SCRAGAC+ CA ++ G +D L D ++E+ V LTCI P +D V +
Sbjct: 57 YDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVRLTCIGSPAADEVKIVYN 116
Query: 118 ESELN 122
L+
Sbjct: 117 AXHLD 121
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 60 KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDD----NQMEKGYVLTCIAYPKSDCVIYT 115
+P CR G C TC SG+ D + ++++D + ++GYVL C P SD V
Sbjct: 36 NIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQI 95
Query: 116 HKESEL 121
SE+
Sbjct: 96 QASSEV 101
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 67 AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
AG C C +V G L ++ +GYVL C YP+SD +I +S L
Sbjct: 41 AGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQTYPESDLIIEIPFDSRL 95
>pdb|1JQ4|A Chain A, [2fe-2s] Domain Of Methane Monooxygenase Reductase From
Methylococcus Capsulatus (Bath)
Length = 98
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 64 SCRAGACSTCAGLMVSGSVDQSDGSF--LDDNQMEKGYVLTCIAYPKSDCVI---YTH 116
SCR G C+TC L G D S L + E+G VL C YPK+D I YTH
Sbjct: 41 SCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYTH 98
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 57 AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKG-YVLTCIAYPKS 109
A ++P SC +G C +C + SG D D DD EKG ++ C++ KS
Sbjct: 264 ANVRVPSSCESGTCGSCKTALCSGEADHRDMVLRDD---EKGTQIMVCVSRAKS 314
>pdb|3BUR|A Chain A, Crystal Structure Of Delta(4)-3-Ketosteroid
5-Beta-Reductase In Complex With Nadp And Testosterone.
Resolution: 1.62 A.
pdb|3BUR|B Chain B, Crystal Structure Of Delta(4)-3-Ketosteroid
5-Beta-Reductase In Complex With Nadp And Testosterone.
Resolution: 1.62 A.
pdb|3BUV|A Chain A, Crystal Structure Of Human Delta(4)-3-Ketosteroid
5-Beta-Reductase In Complex With Nadp And Hepes.
Resolution: 1.35 A.
pdb|3BUV|B Chain B, Crystal Structure Of Human Delta(4)-3-Ketosteroid
5-Beta-Reductase In Complex With Nadp And Hepes.
Resolution: 1.35 A.
pdb|3BV7|A Chain A, Crystal Structure Of Delta(4)-3-Ketosteroid
5-Beta-Reductase In Complex With Nadp And Glycerol.
Resolution: 1.79 A.
pdb|3BV7|B Chain B, Crystal Structure Of Delta(4)-3-Ketosteroid
5-Beta-Reductase In Complex With Nadp And Glycerol.
Resolution: 1.79 A.
pdb|3CAV|A Chain A, Crystal Structure Of 5beta-Reductase (Akr1d1) In Complex
With Nadp+ And 5beta-Pregnan-3,20-Dione
pdb|3CAV|B Chain B, Crystal Structure Of 5beta-Reductase (Akr1d1) In Complex
With Nadp+ And 5beta-Pregnan-3,20-Dione
pdb|3CAQ|A Chain A, Crystal Structure Of 5beta-Reductase (Akr1d1) In Complex
With Nadph
pdb|3CAQ|B Chain B, Crystal Structure Of 5beta-Reductase (Akr1d1) In Complex
With Nadph
pdb|3CAS|A Chain A, Crystal Structure Of 5beta-Reductase (Akr1d1) In Complex
With Nadp+ And 4-Androstenedione
pdb|3CAS|B Chain B, Crystal Structure Of 5beta-Reductase (Akr1d1) In Complex
With Nadp+ And 4-Androstenedione
Length = 326
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 49 SSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKG 98
+S + + Y P S GAC+T + + DG+++ N+ E G
Sbjct: 16 NSIPIIGLGTYSEPKSTPKGACATSVKVAIDTGYRHIDGAYIYQNEHEVG 65
>pdb|3UZW|A Chain A, Crystal Structure Of 5beta-Reductase (Akr1d1) E120h
Mutant In Complex With Nadp+
pdb|3UZW|B Chain B, Crystal Structure Of 5beta-Reductase (Akr1d1) E120h
Mutant In Complex With Nadp+
pdb|3UZX|A Chain A, Crystal Structure Of 5beta-Reductase (Akr1d1) E120h
Mutant In Complex With Nadp+ And Epiandrosterone
pdb|3UZX|B Chain B, Crystal Structure Of 5beta-Reductase (Akr1d1) E120h
Mutant In Complex With Nadp+ And Epiandrosterone
pdb|3UZY|A Chain A, Crystal Structure Of 5beta-Reductase (Akr1d1) E120h
Mutant In Complex With Nadp+ And
5beta-Dihydrotestosterone
pdb|3UZY|B Chain B, Crystal Structure Of 5beta-Reductase (Akr1d1) E120h
Mutant In Complex With Nadp+ And
5beta-Dihydrotestosterone
pdb|3UZZ|A Chain A, Crystal Structure Of 5beta-Reductase (Akr1d1) E120h
Mutant In Complex With Nadp+ And Delta4-Androstenedione
pdb|3UZZ|B Chain B, Crystal Structure Of 5beta-Reductase (Akr1d1) E120h
Mutant In Complex With Nadp+ And Delta4-Androstenedione
Length = 346
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 49 SSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKG 98
+S + + Y P S GAC+T + + DG+++ N+ E G
Sbjct: 36 NSIPIIGLGTYSEPKSTPKGACATSVKVAIDTGYRHIDGAYIYQNEHEVG 85
>pdb|3CMF|A Chain A, Crystal Structure Of Human Liver 5beta-Reductase
(Akr1d1) In Complex With Nadp And Cortisone. Resolution
1.90 A.
pdb|3CMF|B Chain B, Crystal Structure Of Human Liver 5beta-Reductase
(Akr1d1) In Complex With Nadp And Cortisone. Resolution
1.90 A.
pdb|3COT|A Chain A, Crystal Structure Of Human Liver Delta(4)-3-Ketosteroid
5beta-Reductase (Akr1d1) In Complex With Progesterone
And Nadp. Resolution: 2.03 A.
pdb|3COT|B Chain B, Crystal Structure Of Human Liver Delta(4)-3-Ketosteroid
5beta-Reductase (Akr1d1) In Complex With Progesterone
And Nadp. Resolution: 2.03 A.
pdb|3DOP|A Chain A, Crystal Structure Of 5beta-Reductase (Akr1d1) In Complex
With Nadp+ And 5beta-Dihydrotestosterone, Resolution
2.00a
pdb|3DOP|B Chain B, Crystal Structure Of 5beta-Reductase (Akr1d1) In Complex
With Nadp+ And 5beta-Dihydrotestosterone, Resolution
2.00a
pdb|3G1R|A Chain A, Crystal Structure Of Human Liver 5beta-Reductase
(Akr1d1) In Complex With Nadp And Finasteride.
Resolution 1.70 A
pdb|3G1R|B Chain B, Crystal Structure Of Human Liver 5beta-Reductase
(Akr1d1) In Complex With Nadp And Finasteride.
Resolution 1.70 A
Length = 346
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 49 SSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKG 98
+S + + Y P S GAC+T + + DG+++ N+ E G
Sbjct: 36 NSIPIIGLGTYSEPKSTPKGACATSVKVAIDTGYRHIDGAYIYQNEHEVG 85
>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 241
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 63 YSCRAGACSTCAGLMVSG 80
+ CRAG C +C G+M++G
Sbjct: 55 FVCRAGICGSC-GMMING 71
>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|B Chain B, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|E Chain E, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|B Chain B, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|E Chain E, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
Length = 239
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 63 YSCRAGACSTCAGLMVSG 80
+ CRAG C +C G+M++G
Sbjct: 55 FVCRAGICGSC-GMMING 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.128 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,037,083
Number of Sequences: 62578
Number of extensions: 88052
Number of successful extensions: 306
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 41
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)