Query 045945
Match_columns 122
No_of_seqs 144 out of 1687
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:09:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10684 HCP oxidoreductase, N 99.9 7E-23 1.5E-27 164.8 9.0 91 24-114 203-332 (332)
2 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 2E-21 4.4E-26 156.9 9.9 94 22-115 205-351 (352)
3 CHL00134 petF ferredoxin; Vali 99.9 1.5E-21 3.2E-26 134.6 6.7 79 43-121 18-98 (99)
4 TIGR02008 fdx_plant ferredoxin 99.8 2.9E-21 6.4E-26 132.3 6.5 79 43-121 16-96 (97)
5 PLN03136 Ferredoxin; Provision 99.8 2.5E-21 5.5E-26 142.6 6.5 80 42-121 66-147 (148)
6 PRK10713 2Fe-2S ferredoxin Yfa 99.8 5.7E-20 1.2E-24 123.1 6.1 71 42-115 11-84 (84)
7 PTZ00038 ferredoxin; Provision 99.8 4.4E-20 9.6E-25 140.8 6.1 80 42-121 107-188 (191)
8 PRK07609 CDP-6-deoxy-delta-3,4 99.7 8.5E-18 1.8E-22 135.2 6.8 79 42-120 12-94 (339)
9 PRK05713 hypothetical protein; 99.7 5.3E-17 1.1E-21 129.9 6.6 75 42-116 9-85 (312)
10 PRK11872 antC anthranilate dio 99.7 1.1E-16 2.3E-21 129.7 7.2 75 44-118 17-95 (340)
11 cd00207 fer2 2Fe-2S iron-sulfu 99.6 5.8E-16 1.3E-20 101.2 5.4 72 43-114 11-84 (84)
12 COG0633 Fdx Ferredoxin [Energy 99.6 2.3E-15 4.9E-20 104.3 5.5 76 45-120 18-100 (102)
13 TIGR02007 fdx_isc ferredoxin, 99.6 2.2E-15 4.7E-20 105.4 4.6 78 42-119 16-103 (110)
14 PRK05464 Na(+)-translocating N 99.5 1.8E-14 4E-19 119.4 5.9 76 42-117 46-126 (409)
15 TIGR01941 nqrF NADH:ubiquinone 99.5 2.9E-14 6.2E-19 118.1 5.7 75 43-117 43-122 (405)
16 PF00111 Fer2: 2Fe-2S iron-sul 99.5 5E-14 1.1E-18 91.5 4.6 57 51-108 20-78 (78)
17 PLN02593 adrenodoxin-like ferr 99.4 3.8E-13 8.1E-18 95.4 3.0 74 46-119 17-104 (117)
18 COG2871 NqrF Na+-transporting 99.3 4.5E-12 9.8E-17 103.0 4.8 77 42-118 47-128 (410)
19 PTZ00490 Ferredoxin superfamil 99.2 1.2E-11 2.5E-16 90.9 4.7 78 42-119 48-139 (143)
20 COG3894 Uncharacterized metal- 99.1 7.5E-11 1.6E-15 101.0 3.3 75 47-122 15-93 (614)
21 PRK08345 cytochrome-c3 hydroge 98.4 1.6E-07 3.5E-12 74.7 2.6 54 23-80 211-266 (289)
22 cd06221 sulfite_reductase_like 98.4 1.7E-07 3.6E-12 73.0 2.0 50 23-76 189-240 (253)
23 PRK08221 anaerobic sulfite red 98.3 2E-07 4.4E-12 73.2 1.7 50 23-76 191-242 (263)
24 cd06220 DHOD_e_trans_like2 FAD 98.3 4.6E-07 9.9E-12 69.5 3.5 50 22-78 165-216 (233)
25 TIGR02911 sulfite_red_B sulfit 98.2 6.4E-07 1.4E-11 70.3 1.5 50 23-76 189-240 (261)
26 cd06218 DHOD_e_trans FAD/NAD b 98.1 4.3E-06 9.2E-11 64.9 4.5 50 23-79 179-230 (246)
27 PRK00054 dihydroorotate dehydr 98.0 2.3E-06 5.1E-11 66.3 2.2 51 23-80 180-232 (250)
28 cd06219 DHOD_e_trans_like1 FAD 98.0 3.9E-06 8.4E-11 65.1 3.1 49 24-80 180-230 (248)
29 PRK08166 NADH dehydrogenase su 98.0 5.3E-06 1.2E-10 74.7 3.3 63 44-117 11-81 (847)
30 PRK07569 bidirectional hydroge 97.9 7E-06 1.5E-10 63.9 2.9 59 43-117 12-78 (234)
31 PRK06222 ferredoxin-NADP(+) re 97.8 1.5E-05 3.2E-10 63.2 3.6 47 24-77 181-229 (281)
32 PRK06259 succinate dehydrogena 97.8 1.7E-05 3.8E-10 67.1 3.8 54 46-117 27-88 (486)
33 cd06192 DHOD_e_trans_like FAD/ 97.6 3.1E-05 6.7E-10 59.5 2.2 50 24-78 178-229 (243)
34 PF13510 Fer2_4: 2Fe-2S iron-s 97.3 6.6E-05 1.4E-09 49.9 0.7 56 44-116 13-80 (82)
35 PRK12779 putative bifunctional 97.2 0.00029 6.2E-09 64.8 4.1 46 25-77 848-895 (944)
36 cd06189 flavin_oxioreductase N 97.2 0.00017 3.6E-09 54.6 1.9 33 23-55 189-223 (224)
37 PRK05464 Na(+)-translocating N 97.2 0.00013 2.9E-09 60.6 1.4 37 22-58 371-409 (409)
38 cd06188 NADH_quinone_reductase 97.2 0.00015 3.3E-09 57.1 1.6 33 23-55 248-282 (283)
39 PRK12778 putative bifunctional 97.2 0.00032 7E-09 62.5 3.6 46 25-77 182-229 (752)
40 cd06198 FNR_like_3 NAD(P) bind 97.2 0.00031 6.7E-09 52.8 3.0 36 21-56 178-215 (216)
41 cd06211 phenol_2-monooxygenase 97.2 0.00022 4.8E-09 54.5 2.0 33 23-55 203-237 (238)
42 PRK12775 putative trifunctiona 97.1 0.00032 7E-09 64.8 3.3 46 25-77 182-229 (1006)
43 cd06196 FNR_like_1 Ferredoxin 97.1 0.00025 5.4E-09 53.3 1.9 32 22-53 184-217 (218)
44 COG1018 Hmp Flavodoxin reducta 97.1 0.00021 4.5E-09 57.0 1.5 40 19-58 191-232 (266)
45 TIGR01941 nqrF NADH:ubiquinone 97.1 0.0002 4.4E-09 59.5 1.5 36 23-58 368-405 (405)
46 cd06217 FNR_iron_sulfur_bindin 97.1 0.00027 5.8E-09 53.5 1.8 34 22-55 199-234 (235)
47 PRK05802 hypothetical protein; 97.1 0.00041 9E-09 56.4 3.0 46 25-77 255-304 (320)
48 PRK08051 fre FMN reductase; Va 97.1 0.00028 6E-09 54.0 1.9 34 23-56 193-229 (232)
49 cd06212 monooxygenase_like The 97.1 0.0003 6.6E-09 53.4 1.8 34 23-56 196-231 (232)
50 cd06194 FNR_N-term_Iron_sulfur 97.0 0.00032 6.9E-09 52.8 1.9 35 21-55 184-220 (222)
51 cd00322 FNR_like Ferredoxin re 97.0 0.00042 9E-09 51.5 2.2 33 21-53 188-222 (223)
52 cd06191 FNR_iron_sulfur_bindin 97.0 0.00038 8.3E-09 52.8 1.7 32 24-55 197-230 (231)
53 cd06215 FNR_iron_sulfur_bindin 97.0 0.00035 7.7E-09 52.7 1.5 32 23-54 196-229 (231)
54 cd06209 BenDO_FAD_NAD Benzoate 96.9 0.00044 9.6E-09 52.3 1.8 35 22-56 191-227 (228)
55 PRK13552 frdB fumarate reducta 96.9 0.00053 1.1E-08 53.9 2.2 24 57-81 49-72 (239)
56 cd06195 FNR1 Ferredoxin-NADP+ 96.9 0.00041 8.8E-09 53.0 1.3 32 23-54 200-239 (241)
57 PRK05713 hypothetical protein; 96.9 0.00048 1E-08 55.2 1.7 34 23-56 273-308 (312)
58 cd06187 O2ase_reductase_like T 96.9 0.00052 1.1E-08 51.5 1.8 32 23-54 189-222 (224)
59 cd06210 MMO_FAD_NAD_binding Me 96.8 0.00061 1.3E-08 51.7 1.9 34 23-56 200-235 (236)
60 cd06184 flavohem_like_fad_nad_ 96.8 0.00059 1.3E-08 52.2 1.7 37 20-56 205-243 (247)
61 PRK11872 antC anthranilate dio 96.8 0.00052 1.1E-08 55.8 1.1 34 24-57 301-336 (340)
62 PRK13289 bifunctional nitric o 96.7 0.00068 1.5E-08 55.6 1.6 35 23-57 357-393 (399)
63 cd06213 oxygenase_e_transfer_s 96.7 0.00075 1.6E-08 51.1 1.5 33 22-54 191-225 (227)
64 cd06185 PDR_like Phthalate dio 96.7 0.00087 1.9E-08 50.0 1.7 33 23-55 175-209 (211)
65 PRK07609 CDP-6-deoxy-delta-3,4 96.6 0.00079 1.7E-08 54.2 1.2 35 23-57 297-333 (339)
66 PRK12575 succinate dehydrogena 96.5 0.0012 2.6E-08 51.9 1.7 25 56-81 47-71 (235)
67 cd06214 PA_degradation_oxidore 96.5 0.0014 3E-08 49.8 1.9 34 22-55 204-239 (241)
68 PRK08640 sdhB succinate dehydr 96.4 0.0014 3.1E-08 51.8 1.6 23 58-81 56-78 (249)
69 cd06216 FNR_iron_sulfur_bindin 96.4 0.0018 3.9E-08 49.5 1.9 31 23-54 209-241 (243)
70 cd06190 T4MO_e_transfer_like T 96.4 0.0019 4E-08 48.9 1.8 35 22-56 194-231 (232)
71 PF13085 Fer2_3: 2Fe-2S iron-s 96.3 0.0026 5.6E-08 44.9 2.2 26 55-81 42-67 (110)
72 PLN00129 succinate dehydrogena 96.1 0.0035 7.7E-08 50.5 2.0 24 57-81 88-111 (276)
73 cd06183 cyt_b5_reduct_like Cyt 96.0 0.0044 9.5E-08 46.6 2.2 32 21-52 198-232 (234)
74 PF00175 NAD_binding_1: Oxidor 95.7 0.0042 9E-08 41.4 0.9 17 21-37 89-105 (109)
75 cd06193 siderophore_interactin 95.6 0.0074 1.6E-07 46.3 2.2 33 21-53 195-230 (235)
76 TIGR01973 NuoG NADH-quinone ox 95.6 0.0097 2.1E-07 51.9 3.1 59 43-116 7-73 (603)
77 PTZ00319 NADH-cytochrome B5 re 95.6 0.007 1.5E-07 48.6 2.0 29 24-52 267-298 (300)
78 PRK12814 putative NADPH-depend 95.2 0.016 3.4E-07 51.2 3.0 59 43-117 12-78 (652)
79 PTZ00306 NADH-dependent fumara 95.1 0.014 3E-07 54.8 2.3 32 21-52 1126-1159(1167)
80 PRK12386 fumarate reductase ir 94.8 0.024 5.1E-07 45.1 2.8 22 59-81 47-68 (251)
81 PTZ00305 NADH:ubiquinone oxido 94.7 0.027 6E-07 46.0 2.9 58 43-116 77-143 (297)
82 PRK09130 NADH dehydrogenase su 94.6 0.03 6.5E-07 50.0 3.0 60 42-116 9-76 (687)
83 cd06197 FNR_like_2 FAD/NAD(P) 94.5 0.013 2.9E-07 44.6 0.6 18 26-43 192-211 (220)
84 TIGR00384 dhsB succinate dehyd 94.4 0.027 5.8E-07 43.4 2.1 31 51-82 28-64 (220)
85 PLN03116 ferredoxin--NADP+ red 94.3 0.054 1.2E-06 43.4 3.7 15 23-37 258-272 (307)
86 KOG3309 Ferredoxin [Energy pro 94.2 0.093 2E-06 39.2 4.5 67 51-118 67-145 (159)
87 PRK12577 succinate dehydrogena 94.0 0.048 1E-06 44.7 2.9 36 45-81 24-67 (329)
88 PRK07570 succinate dehydrogena 93.9 0.028 6E-07 44.7 1.3 24 58-82 51-74 (250)
89 PRK07860 NADH dehydrogenase su 93.8 0.022 4.8E-07 51.5 0.7 59 42-116 12-78 (797)
90 PRK08493 NADH dehydrogenase su 93.7 0.052 1.1E-06 49.7 2.8 56 43-116 10-73 (819)
91 cd06201 SiR_like2 Cytochrome p 93.7 0.054 1.2E-06 43.1 2.7 21 23-43 244-266 (289)
92 PRK10926 ferredoxin-NADP reduc 93.6 0.071 1.5E-06 41.3 3.1 26 23-48 205-233 (248)
93 PLN03115 ferredoxin--NADP(+) r 93.4 0.097 2.1E-06 43.7 3.8 16 22-37 317-332 (367)
94 COG1034 NuoG NADH dehydrogenas 93.4 0.062 1.3E-06 48.4 2.7 59 42-116 9-75 (693)
95 PRK09129 NADH dehydrogenase su 93.1 0.059 1.3E-06 48.4 2.2 58 43-116 10-75 (776)
96 PRK05950 sdhB succinate dehydr 93.1 0.084 1.8E-06 41.0 2.8 31 51-82 32-68 (232)
97 COG4097 Predicted ferric reduc 92.9 0.11 2.4E-06 44.1 3.5 32 25-56 402-435 (438)
98 PRK11433 aldehyde oxidoreducta 92.9 0.091 2E-06 41.2 2.7 37 45-82 64-104 (217)
99 COG0479 FrdB Succinate dehydro 92.8 0.053 1.1E-06 42.9 1.3 26 56-82 44-69 (234)
100 cd06206 bifunctional_CYPOR The 92.7 0.069 1.5E-06 44.1 1.9 27 23-49 327-355 (384)
101 cd06208 CYPOR_like_FNR These f 92.5 0.092 2E-06 41.5 2.3 21 23-43 238-260 (286)
102 PRK12576 succinate dehydrogena 92.2 0.15 3.2E-06 41.0 3.2 31 51-82 38-74 (279)
103 PRK12385 fumarate reductase ir 91.8 0.095 2.1E-06 41.3 1.7 24 57-81 50-73 (244)
104 PLN02252 nitrate reductase [NA 91.8 0.11 2.4E-06 47.9 2.2 29 23-51 854-885 (888)
105 cd06200 SiR_like1 Cytochrome p 91.7 0.13 2.7E-06 39.9 2.2 19 24-42 202-223 (245)
106 cd06182 CYPOR_like NADPH cytoc 91.3 0.19 4.2E-06 39.5 2.9 21 24-44 214-237 (267)
107 KOG0534 NADH-cytochrome b-5 re 91.3 0.2 4.4E-06 40.7 3.1 27 24-50 253-282 (286)
108 KOG3378 Globins and related he 90.8 0.14 3.1E-06 42.1 1.8 33 22-54 344-378 (385)
109 PRK09908 xanthine dehydrogenas 90.7 0.27 5.9E-06 36.8 3.1 37 45-82 21-60 (159)
110 TIGR03224 benzo_boxA benzoyl-C 89.9 0.28 6E-06 41.2 2.8 14 24-37 363-376 (411)
111 KOG3049 Succinate dehydrogenas 88.6 0.17 3.7E-06 40.3 0.6 52 26-77 50-112 (288)
112 cd06207 CyPoR_like NADPH cytoc 87.9 0.28 6.1E-06 40.5 1.5 24 25-48 330-356 (382)
113 cd06202 Nitric_oxide_synthase 87.8 0.34 7.5E-06 40.5 2.0 16 22-37 348-363 (406)
114 PTZ00274 cytochrome b5 reducta 87.6 0.34 7.4E-06 39.6 1.8 13 25-37 264-276 (325)
115 PF08030 NAD_binding_6: Ferric 87.6 0.38 8.3E-06 33.9 1.9 18 20-37 132-149 (156)
116 COG0543 UbiB 2-polyprenylpheno 87.2 0.61 1.3E-05 36.5 3.0 27 23-49 191-219 (252)
117 TIGR03193 4hydroxCoAred 4-hydr 87.1 0.69 1.5E-05 34.2 3.0 37 44-81 13-53 (148)
118 cd06204 CYPOR NADPH cytochrome 84.3 0.62 1.4E-05 39.1 1.8 20 23-42 362-384 (416)
119 COG2871 NqrF Na+-transporting 84.1 0.72 1.6E-05 38.4 2.0 29 22-50 372-402 (410)
120 PRK06214 sulfite reductase; Pr 83.2 0.91 2E-05 39.7 2.5 15 23-37 476-490 (530)
121 cd06199 SiR Cytochrome p450- l 82.9 0.71 1.5E-05 37.9 1.6 15 23-37 306-321 (360)
122 cd06203 methionine_synthase_re 82.2 1.5 3.2E-05 36.6 3.3 14 23-36 344-357 (398)
123 cd06186 NOX_Duox_like_FAD_NADP 78.2 0.69 1.5E-05 34.2 0.0 16 27-42 179-196 (210)
124 TIGR01931 cysJ sulfite reducta 77.6 0.96 2.1E-05 39.9 0.7 22 23-44 543-567 (597)
125 PRK15431 ferrous iron transpor 75.7 3.2 6.9E-05 27.7 2.7 37 38-74 20-65 (78)
126 PF10418 DHODB_Fe-S_bind: Iron 75.1 1.8 4E-05 25.0 1.3 18 63-80 4-21 (40)
127 TIGR03198 pucE xanthine dehydr 74.9 2.1 4.6E-05 31.7 1.8 30 51-81 24-55 (151)
128 PRK10953 cysJ sulfite reductas 72.3 2.3 4.9E-05 37.7 1.7 15 23-37 546-560 (600)
129 TIGR02963 xanthine_xdhA xanthi 65.5 7.3 0.00016 33.5 3.4 32 46-77 15-50 (467)
130 PF09012 FeoC: FeoC like trans 64.1 4 8.7E-05 25.6 1.2 38 38-76 18-63 (69)
131 COG3383 Uncharacterized anaero 63.4 4.8 0.0001 37.4 1.9 41 42-83 13-61 (978)
132 TIGR03311 Se_dep_Molyb_1 selen 62.9 7.8 0.00017 35.8 3.2 37 46-83 12-52 (848)
133 KOG1158 NADP/FAD dependent oxi 55.6 7.6 0.00016 35.1 1.8 15 23-37 591-606 (645)
134 TIGR03313 Se_sel_red_Mo probab 53.7 12 0.00027 35.0 2.9 38 45-83 11-52 (951)
135 COG0369 CysJ Sulfite reductase 51.8 8.8 0.00019 34.2 1.6 25 20-44 530-557 (587)
136 PLN00192 aldehyde oxidase 49.7 21 0.00045 34.8 3.8 27 51-77 27-55 (1344)
137 PRK06567 putative bifunctional 46.8 8.7 0.00019 36.5 0.8 49 25-77 936-987 (1028)
138 PRK09800 putative hypoxanthine 42.8 23 0.0005 33.3 2.9 36 46-82 16-55 (956)
139 PLN02906 xanthine dehydrogenas 41.7 27 0.0006 33.9 3.3 28 51-78 5-33 (1319)
140 TIGR02969 mam_aldehyde_ox alde 38.8 34 0.00073 33.4 3.4 33 46-78 17-53 (1330)
141 KOG0039 Ferric reductase, NADH 37.0 25 0.00055 31.5 2.2 21 25-45 610-632 (646)
142 COG2080 CoxS Aerobic-type carb 36.0 26 0.00056 26.2 1.8 38 45-83 16-57 (156)
143 KOG2282 NADH-ubiquinone oxidor 26.8 40 0.00087 30.3 1.7 50 20-79 28-85 (708)
144 KOG0430 Xanthine dehydrogenase 25.9 35 0.00077 33.1 1.2 34 46-79 17-54 (1257)
145 PRK14536 cysS cysteinyl-tRNA s 25.5 41 0.00089 29.4 1.5 15 23-37 22-36 (490)
146 PF01406 tRNA-synt_1e: tRNA sy 25.0 23 0.00051 29.1 -0.1 14 22-35 6-19 (300)
147 PLN02946 cysteine-tRNA ligase 21.9 54 0.0012 29.2 1.5 14 24-37 80-93 (557)
148 PRK14534 cysS cysteinyl-tRNA s 21.2 50 0.0011 28.8 1.2 15 21-35 18-32 (481)
149 COG0215 CysS Cysteinyl-tRNA sy 21.1 55 0.0012 28.6 1.4 11 25-35 23-33 (464)
150 cd00672 CysRS_core catalytic c 21.1 61 0.0013 24.8 1.6 21 17-37 13-33 (213)
No 1
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.88 E-value=7e-23 Score=164.83 Aligned_cols=91 Identities=25% Similarity=0.471 Sum_probs=81.6
Q ss_pred CCeeEEcCChhhhh--HhHHHHcCCCCch-------------------------------------HHHHHHcCCCcCCC
Q 045945 24 MKFPLVKSPGSLVS--RSVSKAFGLKSSS-------------------------------------FKVSAMAVYKLPYS 64 (122)
Q Consensus 24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~-------------------------------------L~a~~~~Gi~i~~~ 64 (122)
+.++|+|||.+||+ ++++++.|+++++ |++++++|+++||+
T Consensus 203 ~~~vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~E~F~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~lL~~~~~~gi~~~~~ 282 (332)
T PRK10684 203 SRTVMTCGPAPYMDWVEQEVKALGVTADRFFKEKFFTPVAEAATSGLTFTKLQPAREFYAPVGTTLLEALESNKVPVVAA 282 (332)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCHHHeEeeccCCCCCCcCCCceEEEEecCCEEEEeCCCChHHHHHHHcCCCccCC
Confidence 57899999999999 7788887776432 77788999999999
Q ss_pred CCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945 65 CRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY 114 (122)
Q Consensus 65 Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~ 114 (122)
||.|.||+|++++++|++.+.....|+++++++|++|+||++|.+|++|+
T Consensus 283 C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~d~~i~ 332 (332)
T PRK10684 283 CRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA 332 (332)
T ss_pred CCCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeCEECCCeEEC
Confidence 99999999999999999998766789999999999999999999998873
No 2
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.86 E-value=2e-21 Score=156.91 Aligned_cols=94 Identities=30% Similarity=0.594 Sum_probs=80.6
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCCCch-------------------------------------------------
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSS------------------------------------------------- 50 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~------------------------------------------------- 50 (122)
....++|+|||.+||+ ++++++.|+++++
T Consensus 205 ~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s 284 (352)
T TIGR02160 205 DRADEWFLCGPQAMVDDAEQALTGLGVPAGRVHLELFYTDDEPGREVRHEVSGPEGDVSKVTVTLDGRSTETSSLSRDES 284 (352)
T ss_pred ccCCEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEeccCCCCCcccccccccccCCCceEEEEEECCceEEEEecCCCCc
Confidence 3457899999999999 7777776653110
Q ss_pred -HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCC-eEEEe
Q 045945 51 -FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSD-CVIYT 115 (122)
Q Consensus 51 -L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sd-l~I~l 115 (122)
|++++++|+++||+|+.|.||+|++++++|++.+.+...|+++++++|++|+||++|.+| ++|++
T Consensus 285 lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~~~~~~~~ 351 (352)
T TIGR02160 285 VLDAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAYPLSDKLVVDY 351 (352)
T ss_pred HHHHHHHcCCCCcCCCCCccCCCCEEEEeccccccccccCCCHHHHhCCcEEEeeEEECCCcEEEec
Confidence 677789999999999999999999999999999987667999999999999999999987 78764
No 3
>CHL00134 petF ferredoxin; Validated
Probab=99.85 E-value=1.5e-21 Score=134.57 Aligned_cols=79 Identities=57% Similarity=1.009 Sum_probs=72.0
Q ss_pred HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945 43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120 (122)
Q Consensus 43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~ 120 (122)
.+.+++++ |++++++||++||+|++|.||+|+++|++|++++.+...|+++++++|++|+|+++|.+|++|+++..+.
T Consensus 18 ~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~~d~~i~~~~~~~ 97 (99)
T CHL00134 18 TIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCVAYPTSDCTILTHQEEE 97 (99)
T ss_pred EEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEeeCEECCCeEEEeccccc
Confidence 45667766 9999999999999999999999999999999998776679999999999999999999999999998876
Q ss_pred C
Q 045945 121 L 121 (122)
Q Consensus 121 ~ 121 (122)
+
T Consensus 98 ~ 98 (99)
T CHL00134 98 L 98 (99)
T ss_pred c
Confidence 4
No 4
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.84 E-value=2.9e-21 Score=132.32 Aligned_cols=79 Identities=61% Similarity=1.023 Sum_probs=71.0
Q ss_pred HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945 43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120 (122)
Q Consensus 43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~ 120 (122)
.+.+++++ |++++++|+++||+|++|.||+|+++|++|++++.+...|+++++++|++|+||++|.+|++|+++++++
T Consensus 16 ~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~~~~di~v~~~~~~~ 95 (97)
T TIGR02008 16 TIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAYPTSDCTIETHKEED 95 (97)
T ss_pred EEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCEECCCeEEEeccccc
Confidence 45556666 8999999999999999999999999999999998765669999999999999999999999999998776
Q ss_pred C
Q 045945 121 L 121 (122)
Q Consensus 121 ~ 121 (122)
+
T Consensus 96 ~ 96 (97)
T TIGR02008 96 L 96 (97)
T ss_pred c
Confidence 4
No 5
>PLN03136 Ferredoxin; Provisional
Probab=99.84 E-value=2.5e-21 Score=142.57 Aligned_cols=80 Identities=56% Similarity=0.964 Sum_probs=73.9
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCC
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~ 119 (122)
+.+.+++++ |++++++|+++||+|+.|.||+|+++|++|++++.+...|+++++++||+|+||++|.+|++|+++.++
T Consensus 66 ~~~~~~~g~tILdAa~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC~a~p~sD~~Ie~~~e~ 145 (148)
T PLN03136 66 QEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEE 145 (148)
T ss_pred EEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEeEeEECCCcEEecCChh
Confidence 356667777 999999999999999999999999999999999987778999999999999999999999999999998
Q ss_pred CC
Q 045945 120 EL 121 (122)
Q Consensus 120 ~~ 121 (122)
+|
T Consensus 146 ~l 147 (148)
T PLN03136 146 AI 147 (148)
T ss_pred hc
Confidence 86
No 6
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.81 E-value=5.7e-20 Score=123.08 Aligned_cols=71 Identities=23% Similarity=0.393 Sum_probs=60.0
Q ss_pred HHcCCCCc-h--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEe
Q 045945 42 KAFGLKSS-S--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYT 115 (122)
Q Consensus 42 ~~~~~~~~-~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l 115 (122)
+.+.++++ + |++++++|+++||+||.|.||+|++++++|++++.+.. ..++++|++|+|+++|.+|++|++
T Consensus 11 ~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~~p~sd~~ie~ 84 (84)
T PRK10713 11 TQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCCRAKGDIEIEM 84 (84)
T ss_pred cEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeCEECCCEEEeC
Confidence 34566543 3 99999999999999999999999999999999986532 235678999999999999999875
No 7
>PTZ00038 ferredoxin; Provisional
Probab=99.80 E-value=4.4e-20 Score=140.85 Aligned_cols=80 Identities=50% Similarity=0.926 Sum_probs=73.4
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCC
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~ 119 (122)
+.+.+++++ |++++++||.+||+|+.|.||+|+++|++|++++.+...|+++++++|++|+||++|.+|++|++++++
T Consensus 107 ~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa~p~sDi~Ie~p~e~ 186 (191)
T PTZ00038 107 KVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCYPKSDCTIETHKED 186 (191)
T ss_pred EEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeCEECCCeEEecCChH
Confidence 455667776 999999999999999999999999999999999988778999999999999999999999999999987
Q ss_pred CC
Q 045945 120 EL 121 (122)
Q Consensus 120 ~~ 121 (122)
++
T Consensus 187 ~~ 188 (191)
T PTZ00038 187 EL 188 (191)
T ss_pred Hh
Confidence 65
No 8
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.72 E-value=8.5e-18 Score=135.21 Aligned_cols=79 Identities=30% Similarity=0.600 Sum_probs=70.0
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCC--CCCCCChhcccCCeEEeeceEECCCeEEEecC
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQS--DGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHK 117 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~--~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~ 117 (122)
+.+.+++++ |++++++|+.+||+|+.|.||+|++++++|++++. +...|+++++++|++|+||++|.+|++|+++.
T Consensus 12 ~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~~ 91 (339)
T PRK07609 12 RQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPLSDLVLEARE 91 (339)
T ss_pred eEEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEECCCEEEEecc
Confidence 345566666 99999999999999999999999999999999886 34689999999999999999999999999886
Q ss_pred CCC
Q 045945 118 ESE 120 (122)
Q Consensus 118 ~~~ 120 (122)
.++
T Consensus 92 ~~~ 94 (339)
T PRK07609 92 VPA 94 (339)
T ss_pred ccc
Confidence 554
No 9
>PRK05713 hypothetical protein; Provisional
Probab=99.68 E-value=5.3e-17 Score=129.92 Aligned_cols=75 Identities=24% Similarity=0.458 Sum_probs=67.1
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEec
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTH 116 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~ 116 (122)
+++.+++++ |++++++||.+||+|++|.||+|++++++|++.......|+++++++|++|+||+++.+|++|+++
T Consensus 9 ~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~ 85 (312)
T PRK05713 9 RRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVEVF 85 (312)
T ss_pred eEEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEEec
Confidence 355667666 999999999999999999999999999999987555567899999999999999999999999976
No 10
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.67 E-value=1.1e-16 Score=129.73 Aligned_cols=75 Identities=28% Similarity=0.517 Sum_probs=66.0
Q ss_pred cCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccC--CCCCCCChhcccCCeEEeeceEECCCeEEEecCC
Q 045945 44 FGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQ--SDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118 (122)
Q Consensus 44 ~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~--~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~ 118 (122)
+.+++++ |++++++|+.+||+|+.|.||+|+++|++|+++. .+...|+++++++|++|+||++|.+|++|+++..
T Consensus 17 ~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~~~ 95 (340)
T PRK11872 17 FPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVKSDAAFYFDFD 95 (340)
T ss_pred EEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeCEECCceEEEecCc
Confidence 4456666 9999999999999999999999999999999875 3345799999999999999999999999998754
No 11
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.62 E-value=5.8e-16 Score=101.22 Aligned_cols=72 Identities=42% Similarity=0.693 Sum_probs=62.7
Q ss_pred HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945 43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY 114 (122)
Q Consensus 43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~ 114 (122)
.+.++++. |++++++|++++++|+.|.||+|+++|.+|.+.+.+...++..+..++++|+||+++.+|++|+
T Consensus 11 ~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~i~v~ 84 (84)
T cd00207 11 EVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE 84 (84)
T ss_pred EEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCCcEEC
Confidence 34455555 8999999999999999999999999999999998776667777778899999999999999874
No 12
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.58 E-value=2.3e-15 Score=104.33 Aligned_cols=76 Identities=28% Similarity=0.492 Sum_probs=58.3
Q ss_pred CCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeec--cccCCCCC---CCChhcccCCeEEeeceEECCCeEEEecC
Q 045945 45 GLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSG--SVDQSDGS---FLDDNQMEKGYVLTCIAYPKSDCVIYTHK 117 (122)
Q Consensus 45 ~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G--~v~~~~~~---~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~ 117 (122)
.+++++ |++++++||+++|+||.|.||+|+++|++| ++...... .|.+.....++||+||+++++|+.|....
T Consensus 18 ~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~~~d~~i~~~~ 97 (102)
T COG0633 18 AVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDIEVVE 97 (102)
T ss_pred eccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEECCCcceEEEe
Confidence 344444 999999999999999999999999999999 66655422 22223345569999999999998876655
Q ss_pred CCC
Q 045945 118 ESE 120 (122)
Q Consensus 118 ~~~ 120 (122)
.+.
T Consensus 98 ~~~ 100 (102)
T COG0633 98 EPE 100 (102)
T ss_pred ccC
Confidence 443
No 13
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.57 E-value=2.2e-15 Score=105.45 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=60.8
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCCCCCCChh------cccCCeEEeeceEEC-CCe
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSDGSFLDDN------QMEKGYVLTCIAYPK-SDC 111 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~~~Ls~~------e~~~g~~LaCqs~~~-sdl 111 (122)
+.+.+++|+ |++++++|++++++|+ .|.||+|+++|++|.........+.++ +..++++|+||+++. +|+
T Consensus 16 ~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~~~~~dl 95 (110)
T TIGR02007 16 AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAVVADEDL 95 (110)
T ss_pred eEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEEEcCCCE
Confidence 345566666 9999999999999999 799999999999997554442222221 345679999999987 589
Q ss_pred EEEecCCC
Q 045945 112 VIYTHKES 119 (122)
Q Consensus 112 ~I~l~~~~ 119 (122)
+|+++..+
T Consensus 96 ~v~~~~~~ 103 (110)
T TIGR02007 96 VVEIPKYT 103 (110)
T ss_pred EEEECchh
Confidence 99998654
No 14
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.51 E-value=1.8e-14 Score=119.38 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=65.7
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCC--CCCCChhcccCCeEEeeceEECCCeEEEec
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSD--GSFLDDNQMEKGYVLTCIAYPKSDCVIYTH 116 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~--~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~ 116 (122)
+++.+++|+ |++++++|+++|++|+ +|.||+|+++|++|++.... ...|+++++++|++|+||+++.+|++|++.
T Consensus 46 ~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~~d~~ie~~ 125 (409)
T PRK05464 46 KTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVKQDMKIEVP 125 (409)
T ss_pred EEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEECCCEEEEEC
Confidence 345667776 9999999999999999 59999999999999876543 356888889999999999999999999987
Q ss_pred C
Q 045945 117 K 117 (122)
Q Consensus 117 ~ 117 (122)
.
T Consensus 126 ~ 126 (409)
T PRK05464 126 E 126 (409)
T ss_pred c
Confidence 3
No 15
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.49 E-value=2.9e-14 Score=118.08 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=64.9
Q ss_pred HcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCC--CCCCChhcccCCeEEeeceEECCCeEEEecC
Q 045945 43 AFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSD--GSFLDDNQMEKGYVLTCIAYPKSDCVIYTHK 117 (122)
Q Consensus 43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~--~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~ 117 (122)
.+.+++|+ |++++++|+++|+.|+ .|.||+|+++|++|.+.... ...|+++++++|++|+||+++.+|++|+++.
T Consensus 43 ~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rLaCq~~~~~d~~i~~~~ 122 (405)
T TIGR01941 43 SITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRLSCQVKVKQDMSIEIPE 122 (405)
T ss_pred EEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEEEeeCEECCCEEEEECc
Confidence 45566666 9999999999999999 58999999999999876533 3578888899999999999999999999874
No 16
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.47 E-value=5e-14 Score=91.52 Aligned_cols=57 Identities=33% Similarity=0.661 Sum_probs=49.2
Q ss_pred HHHHHHc-CCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCe-EEeeceEEC
Q 045945 51 FKVSAMA-VYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGY-VLTCIAYPK 108 (122)
Q Consensus 51 L~a~~~~-Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~-~LaCqs~~~ 108 (122)
|++++++ |++++|+|+.|.||+|+++|++|++ +.....++++++++++ +|+||++|+
T Consensus 20 l~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t 78 (78)
T PF00111_consen 20 LDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT 78 (78)
T ss_dssp HHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred HHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence 8899999 9999999999999999999999999 4444667777777776 699999985
No 17
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.36 E-value=3.8e-13 Score=95.39 Aligned_cols=74 Identities=18% Similarity=0.264 Sum_probs=56.9
Q ss_pred CCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCC-------CCCCCC-hhcccCCeEEeeceEECC---Ce
Q 045945 46 LKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQS-------DGSFLD-DNQMEKGYVLTCIAYPKS---DC 111 (122)
Q Consensus 46 ~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~-------~~~~Ls-~~e~~~g~~LaCqs~~~s---dl 111 (122)
++.|+ |++++++|+++++.|+ .|.||+|+++|++++.... +...|+ ..+..+++||+||..+.+ ++
T Consensus 17 ~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~sRLaCQ~~v~~~~~~~ 96 (117)
T PLN02593 17 APVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGM 96 (117)
T ss_pred ECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCCeEecceeEeecCCCCE
Confidence 34454 8999999999999999 7999999999976543321 113455 345677999999999984 68
Q ss_pred EEEecCCC
Q 045945 112 VIYTHKES 119 (122)
Q Consensus 112 ~I~l~~~~ 119 (122)
+|++++.+
T Consensus 97 ~v~ip~~~ 104 (117)
T PLN02593 97 RLALPAAT 104 (117)
T ss_pred EEEcCchh
Confidence 99998765
No 18
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.27 E-value=4.5e-12 Score=102.99 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=66.3
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCC--CCCCChhcccCCeEEeeceEECCCeEEEec
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSD--GSFLDDNQMEKGYVLTCIAYPKSDCVIYTH 116 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~--~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~ 116 (122)
+++.++.|. |.++..+||.|++.|+ .|.||.|+|+|.+|.-+..+ ...+|..+.++||||+||..++.|+.|+++
T Consensus 47 ~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsCQ~~Vk~dm~levp 126 (410)
T COG2871 47 KTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSCQVNVKHDMDLEVP 126 (410)
T ss_pred hceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEEEecccccceeech
Confidence 445566665 8889999999999998 89999999999998766543 367888999999999999999999999998
Q ss_pred CC
Q 045945 117 KE 118 (122)
Q Consensus 117 ~~ 118 (122)
++
T Consensus 127 Ee 128 (410)
T COG2871 127 EE 128 (410)
T ss_pred HH
Confidence 75
No 19
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.22 E-value=1.2e-11 Score=90.87 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=61.3
Q ss_pred HHcCCCCch--HHHHHH-cCCCcCCCCC-CcccCCCeeeeeeccccCCC------CCCCChh-cccCCeEEeeceEECC-
Q 045945 42 KAFGLKSSS--FKVSAM-AVYKLPYSCR-AGACSTCAGLMVSGSVDQSD------GSFLDDN-QMEKGYVLTCIAYPKS- 109 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~-~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~------~~~Ls~~-e~~~g~~LaCqs~~~s- 109 (122)
+++.++.|. ++++.. +++++++.|+ .|.||+|+|+|.+|..+... ...|+.. +..+++||+||..+..
T Consensus 48 ~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~~gsRLaCQi~v~~~ 127 (143)
T PTZ00490 48 CDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKETSRLACQVDLTPE 127 (143)
T ss_pred EEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCCCCcEEeeeEEEecC
Confidence 355667776 888888 4799999998 99999999999987544332 2456655 6788999999999986
Q ss_pred --CeEEEecCCC
Q 045945 110 --DCVIYTHKES 119 (122)
Q Consensus 110 --dl~I~l~~~~ 119 (122)
+++|++++.+
T Consensus 128 ldgl~V~vp~~~ 139 (143)
T PTZ00490 128 MDGLEVELPSYV 139 (143)
T ss_pred CCCEEEEeCccc
Confidence 4699998765
No 20
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.07 E-value=7.5e-11 Score=101.00 Aligned_cols=75 Identities=23% Similarity=0.411 Sum_probs=60.6
Q ss_pred CCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCCC-CCCChhcccCCeEEeeceEECCCeEEEecCCCCCC
Q 045945 47 KSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSDG-SFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESELN 122 (122)
Q Consensus 47 ~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~-~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~~~ 122 (122)
+++. |+++++.|+-|.+.|+ +|+||.|++.|.+|.....+. ++ ..-.+..||+|+||++..+|++|.+|+++.||
T Consensus 15 ~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh-~k~~~~~g~rlac~~~v~gd~~i~ip~es~l~ 93 (614)
T COG3894 15 DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDH-EKYLRERGYRLACQAQVLGDLVIFIPPESRLE 93 (614)
T ss_pred CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhH-HHHHHhhceeeeeehhhcCceEEEcCchhhHH
Confidence 4444 9999999999999998 999999999999998654331 11 11223459999999999999999999998765
No 21
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=98.39 E-value=1.6e-07 Score=74.66 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=45.4
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeeeec
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSG 80 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G 80 (122)
.+.++|+|||.+||+ ++.+++.|+++++++.+ +.-.-.|+.|.||.|.++...|
T Consensus 211 ~~~~vyiCGP~~m~~~v~~~L~~~Gv~~~~i~~~----l~~~m~cg~g~c~~c~~~~~~~ 266 (289)
T PRK08345 211 KNTYAAICGPPVMYKFVFKELINRGYRPERIYVT----LERRMRCGIGKCGHCIVGTSTS 266 (289)
T ss_pred cccEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE----ehhcccccCcccCCCccCCCCc
Confidence 457899999999999 88889999999987654 3356789999999999997555
No 22
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=98.36 E-value=1.7e-07 Score=73.02 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=43.9
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeee
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGL 76 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~ 76 (122)
.+.++|+|||.+|++ .+++++.|++++++|+.. ...--|+.|.||+|++.
T Consensus 189 ~~~~vyicGp~~mv~~~~~~L~~~Gv~~~~i~~~~----~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 189 DNTVAIVCGPPIMMRFVAKELLKLGVPEEQIWVSL----ERRMKCGVGKCGHCQIG 240 (253)
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEeh----hhccccCCccccCcccC
Confidence 568999999999999 888899999999987765 45567999999999987
No 23
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=98.33 E-value=2e-07 Score=73.18 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=43.2
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeee
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGL 76 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~ 76 (122)
.+.++|+|||.+||+ ++.+++.|++++++++. ..-.-.|+.|+||+|++.
T Consensus 191 ~~~~vylCGp~~mv~~~~~~L~~~Gv~~~~i~~~----~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 191 DNMQVIVVGPPIMMKFTVLEFLKRGIKEENIWVS----YERKMCCGVGKCGHCKID 242 (263)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE----ecceeEccCcccCCcccC
Confidence 568899999999999 88889999998887665 345678999999999977
No 24
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=98.32 E-value=4.6e-07 Score=69.47 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=42.0
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeee
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMV 78 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl 78 (122)
....++|+|||.+|++ ++.+++.|+ +.+++.+.+ ..|+.|.||+|.+.+.
T Consensus 165 ~~~~~vyicGp~~m~~~~~~~L~~~g~-~~~i~~e~f------~~cg~g~C~~C~v~~~ 216 (233)
T cd06220 165 EEYDAIYVCGPEIMMYKVLEILDERGV-RAQFSLERY------MKCGIGICGSCCIDPT 216 (233)
T ss_pred cCCCEEEEECCHHHHHHHHHHHHhcCC-cEEEEeccc------ccCcCCCcCccEeccC
Confidence 3446899999999999 888889999 566777754 3899999999999985
No 25
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=98.18 E-value=6.4e-07 Score=70.28 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=41.2
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeee
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGL 76 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~ 76 (122)
.+.++|+|||.+||+ ++.+++.|+++.+++..... .-.|+.|.||.|++.
T Consensus 189 ~~~~v~lCGp~~mv~~~~~~L~~~Gv~~~~i~~~~~~----~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 189 EEVQAIVVGPPIMMKFTVQELLKKGIKEENIWVSYER----KMCCGVGKCGHCKID 240 (261)
T ss_pred cceEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEecc----ceeccCcCCCCcccC
Confidence 467899999999999 88889999998886655332 346999999999876
No 26
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=98.09 E-value=4.3e-06 Score=64.86 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=41.5
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeeee
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVS 79 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~ 79 (122)
...++|+|||.+|++ ++++++.|++.. .-+.-+..|+.|.||.|+....+
T Consensus 179 ~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~-------~~~~~~~~~~~g~c~~c~~~~~~ 230 (246)
T cd06218 179 RPDVVYACGPEPMLKAVAELAAERGVPCQ-------VSLEERMACGIGACLGCVVKTKD 230 (246)
T ss_pred CCCEEEEECCHHHHHHHHHHHHhcCCCEE-------EEecccccCccceecccEEEeec
Confidence 468999999999999 888899898854 22346788999999999998865
No 27
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=98.04 E-value=2.3e-06 Score=66.27 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=38.5
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeeeec
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSG 80 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G 80 (122)
...++|+|||.+||+ ++.+++.|++ ..+..+ =...|+.|.||+|.+.+..|
T Consensus 180 ~~~~vyvCGp~~m~~~v~~~l~~~Gv~-~~~~~e------~~m~cg~G~C~~C~~~~~~~ 232 (250)
T PRK00054 180 EYDAIYSCGPEIMMKKVVEILKEKKVP-AYVSLE------RRMKCGIGACGACVCDTETG 232 (250)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCc-EEEEEc------ccccCcCcccCcCCcccCCC
Confidence 346899999999999 7777888883 323322 25699999999999985443
No 28
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=98.02 E-value=3.9e-06 Score=65.06 Aligned_cols=49 Identities=12% Similarity=0.403 Sum_probs=38.5
Q ss_pred CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeeeec
Q 045945 24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSG 80 (122)
Q Consensus 24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G 80 (122)
...+|+|||.+||+ ++.+++.|++. ..-+.-.-.|+.|.||.|.++. .|
T Consensus 180 ~~~vyiCGP~~m~~~~~~~l~~~Gv~~-------~~s~e~~m~Cg~G~C~~C~~~~-~~ 230 (248)
T cd06219 180 VDLVIAIGPPIMMKAVSELTRPYGIPT-------VVSLNPIMVDGTGMCGACRVTV-GG 230 (248)
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCE-------EEEecccccCccceeeeEEEEe-CC
Confidence 45799999999999 77777777762 1333467789999999999985 44
No 29
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=97.96 E-value=5.3e-06 Score=74.70 Aligned_cols=63 Identities=17% Similarity=0.409 Sum_probs=51.9
Q ss_pred cCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEe
Q 045945 44 FGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYT 115 (122)
Q Consensus 44 ~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l 115 (122)
+.+++|+ |++++++||.||+.|. .|.|+.|+++|++|.+ +...+++++|++.+..+++|+.
T Consensus 11 ~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~-----------~~~~~~~~aC~~~v~~gm~v~t 79 (847)
T PRK08166 11 YEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE-----------DTRGRLVMSCMTPATDGTFISI 79 (847)
T ss_pred EEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc-----------cCCCCcccCcCCCCCCCCEEEe
Confidence 4567777 9999999999999998 6999999999999843 1223578899888888899877
Q ss_pred cC
Q 045945 116 HK 117 (122)
Q Consensus 116 ~~ 117 (122)
..
T Consensus 80 ~~ 81 (847)
T PRK08166 80 DD 81 (847)
T ss_pred CC
Confidence 54
No 30
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.92 E-value=7e-06 Score=63.88 Aligned_cols=59 Identities=20% Similarity=0.409 Sum_probs=47.3
Q ss_pred HcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945 43 AFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY 114 (122)
Q Consensus 43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~ 114 (122)
.+.+++|+ |+++.++|+.+|+.|. .|.|+.|+|+| +|. .+.+.+|++.+..+++|.
T Consensus 12 ~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~~~~~aC~t~v~~Gm~v~ 75 (234)
T PRK07569 12 LVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------NKLLPACVTPVAEGMVVQ 75 (234)
T ss_pred EEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------CccccCcCCCCCCCCEEE
Confidence 35667776 9999999999999998 99999999998 331 134568999988888887
Q ss_pred ecC
Q 045945 115 THK 117 (122)
Q Consensus 115 l~~ 117 (122)
...
T Consensus 76 t~~ 78 (234)
T PRK07569 76 TNT 78 (234)
T ss_pred ECC
Confidence 653
No 31
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=97.84 E-value=1.5e-05 Score=63.18 Aligned_cols=47 Identities=15% Similarity=0.342 Sum_probs=38.0
Q ss_pred CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeee
Q 045945 24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLM 77 (122)
Q Consensus 24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~v 77 (122)
...+|+|||.+||+ .+++++.|++ ....+.-.-.|+.|.|+.|.++.
T Consensus 181 ~~~vy~CGP~~M~~~v~~~l~~~gv~-------~~~sle~~M~CG~G~C~~C~v~~ 229 (281)
T PRK06222 181 VDRVVAIGPVIMMKFVAELTKPYGIK-------TIVSLNPIMVDGTGMCGACRVTV 229 (281)
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCC-------EEEECcccccCcccccceeEEEE
Confidence 35799999999999 7778888876 23345567789999999999975
No 32
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.81 E-value=1.7e-05 Score=67.12 Aligned_cols=54 Identities=28% Similarity=0.478 Sum_probs=42.7
Q ss_pred CCCch--HHHHHH------cCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecC
Q 045945 46 LKSSS--FKVSAM------AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHK 117 (122)
Q Consensus 46 ~~~~~--L~a~~~------~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~ 117 (122)
+++++ |+++.+ .++.++++|+.|.||+|+++| +|. .+|+|++++.++++|+...
T Consensus 27 ~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~~~~i~~~~ 88 (486)
T PRK06259 27 VKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE-----------------PVLACKTEVEDGMIIEPLD 88 (486)
T ss_pred CCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe-----------------EecccccCCCCCCEEEecC
Confidence 33555 677763 677889999999999999995 664 3789999999999888653
No 33
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=97.62 E-value=3.1e-05 Score=59.51 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeee
Q 045945 24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMV 78 (122)
Q Consensus 24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl 78 (122)
...+|+|||.+||+ ++.+++.+ +..++. .-++=.-.|+.|.||.|.+...
T Consensus 178 ~~~v~icGp~~mv~~~~~~l~~~g-~~~~~~----~s~~~~m~Cg~G~C~~C~~~~~ 229 (243)
T cd06192 178 VDRIIVAGSDIMMKAVVEALDEWL-QLIKAS----VSNNSPMCCGIGICGACTIETK 229 (243)
T ss_pred CCEEEEECCHHHHHHHHHHHHhhc-CCceEE----EECCccccCccccccceEEEeC
Confidence 46899999999999 77777766 322222 2234567899999999999753
No 34
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.34 E-value=6.6e-05 Score=49.87 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=35.1
Q ss_pred cCCCCch--HHHHHHcCCCcCCCCCC----------cccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCe
Q 045945 44 FGLKSSS--FKVSAMAVYKLPYSCRA----------GACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDC 111 (122)
Q Consensus 44 ~~~~~~~--L~a~~~~Gi~i~~~Cr~----------G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl 111 (122)
+.+++|+ |+++..+|+.+|+.|.. |.|+.|.|+|- | ...+.||+..+...+
T Consensus 13 v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g----------------~~~v~AC~t~v~~GM 75 (82)
T PF13510_consen 13 VEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-G----------------EPNVRACSTPVEDGM 75 (82)
T ss_dssp EEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-S----------------EEEEETTT-B--TTE
T ss_pred EEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-C----------------CcceEcccCCCcCCc
Confidence 3445555 89999999999999987 99999999883 1 123789999999998
Q ss_pred EEEec
Q 045945 112 VIYTH 116 (122)
Q Consensus 112 ~I~l~ 116 (122)
+|...
T Consensus 76 ~V~T~ 80 (82)
T PF13510_consen 76 VVETQ 80 (82)
T ss_dssp EEE--
T ss_pred EEEEe
Confidence 88653
No 35
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.25 E-value=0.00029 Score=64.76 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=36.3
Q ss_pred CeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeee
Q 045945 25 KFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLM 77 (122)
Q Consensus 25 ~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~v 77 (122)
..+|+|||.+||+ .++++..|++.- .-+.-...|+-|.||.|.+++
T Consensus 848 ~~Vy~CGP~~Mmkav~~~l~~~Gv~~~-------vSlE~~M~CG~G~C~~C~v~~ 895 (944)
T PRK12779 848 AEVIAIGPPLMMRAVSDLTKPYGVKTV-------ASLNSIMVDATGMCGACMVPV 895 (944)
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCeE-------EeecccccCCCeeeCeeeeee
Confidence 5799999999999 778888888751 112234689999999999985
No 36
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=97.22 E-value=0.00017 Score=54.58 Aligned_cols=33 Identities=18% Similarity=-0.002 Sum_probs=29.1
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA 55 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~ 55 (122)
.+.++|+|||.+||+ ++++++.|++++++|.+.
T Consensus 189 ~~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~e~ 223 (224)
T cd06189 189 SDFDVYACGSPEMVYAARDDFVEKGLPEENFFSDA 223 (224)
T ss_pred cccEEEEECCHHHHHHHHHHHHHcCCCHHHcccCC
Confidence 468899999999999 888999999999888653
No 37
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=97.21 E-value=0.00013 Score=60.63 Aligned_cols=37 Identities=8% Similarity=0.058 Sum_probs=32.1
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcC
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAV 58 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~G 58 (122)
..+.++|+|||.+||+ ++.+++.|++++++|.+.+.|
T Consensus 371 ~~~~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~E~F~~ 409 (409)
T PRK05464 371 PEDCEYYMCGPPMMNAAVIKMLKDLGVEDENILLDDFGG 409 (409)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEcccCC
Confidence 3467999999999999 888899999999998887655
No 38
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=97.21 E-value=0.00015 Score=57.07 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=28.7
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA 55 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~ 55 (122)
.+.++|+|||.+||+ ++++++.|++++++|.+.
T Consensus 248 ~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~e~ 282 (283)
T cd06188 248 EDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAFDD 282 (283)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCHHHeeccC
Confidence 457899999999999 888899999999887653
No 39
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.18 E-value=0.00032 Score=62.47 Aligned_cols=46 Identities=13% Similarity=0.319 Sum_probs=35.2
Q ss_pred CeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeee
Q 045945 25 KFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLM 77 (122)
Q Consensus 25 ~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~v 77 (122)
.++|+|||.+||+ .++++..|++. ..-+.-.-.|+.|.||.|.++.
T Consensus 182 ~~vy~CGP~~M~~~v~~~l~~~gv~~-------~~Sle~~M~CG~G~C~~C~v~~ 229 (752)
T PRK12778 182 DKVFAIGPAIMMKFVCLLTKKYGIPT-------IVSLNTIMVDGTGMCGACRVTV 229 (752)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCE-------EEeCcccccCcccccCcceeEe
Confidence 5799999999999 77777666652 1222346789999999999964
No 40
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=97.18 E-value=0.00031 Score=52.76 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=31.1
Q ss_pred CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945 21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM 56 (122)
Q Consensus 21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~ 56 (122)
+..+..+|+|||.+||+ ++.++..|+++++++.+.+
T Consensus 178 ~~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~E~f 215 (216)
T cd06198 178 DLADADVWFCGPPGMADALEKGLRALGVPARRFHYERF 215 (216)
T ss_pred CcCCCeEEEECcHHHHHHHHHHHHHcCCChHhcchhhc
Confidence 44568999999999999 8888999999999887754
No 41
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=97.16 E-value=0.00022 Score=54.47 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=29.1
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA 55 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~ 55 (122)
.+.++|+|||.+||+ ++++++.|++++++|.+.
T Consensus 203 ~~~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i~~e~ 237 (238)
T cd06211 203 RGHKAYLCGPPPMIDACIKTLMQGRLFERDIYYEK 237 (238)
T ss_pred ccCEEEEECCHHHHHHHHHHHHHcCCCHHHccccC
Confidence 467899999999999 889999999999888653
No 42
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.15 E-value=0.00032 Score=64.77 Aligned_cols=46 Identities=17% Similarity=0.396 Sum_probs=36.4
Q ss_pred CeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeee
Q 045945 25 KFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLM 77 (122)
Q Consensus 25 ~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~v 77 (122)
.++|+|||.+||+ .++++..|++ ....+.-...|+.|.||.|++.+
T Consensus 182 d~vy~CGP~~Mm~av~~~~~~~gi~-------~~vSle~~M~cG~G~Cg~C~v~~ 229 (1006)
T PRK12775 182 DLVVAIGPLPMMNACVETTRPFGVK-------TMVSLNAIMVDGTGMCGSCRVTV 229 (1006)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCc-------EEECChhheeCccceeCCCEeee
Confidence 4799999999999 7778888875 11233455789999999999975
No 43
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=97.12 E-value=0.00025 Score=53.27 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=27.5
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHH
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKV 53 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a 53 (122)
....++|+|||.+||+ ++++++.|+++++++.
T Consensus 184 ~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~i~~ 217 (218)
T cd06196 184 DFNQHFYVCGPPPMEEAINGALKELGVPEDSIVF 217 (218)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEec
Confidence 3357899999999999 8999999999987664
No 44
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=97.11 E-value=0.00021 Score=56.98 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=33.9
Q ss_pred cCCCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcC
Q 045945 19 TAPTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAV 58 (122)
Q Consensus 19 ~~~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~G 58 (122)
.+|+.++++|+|||.+||+ ...+.++|++.+++|.+.+..
T Consensus 191 ~~~~~~r~~y~CGp~~fm~av~~~l~~~g~~~~~vh~E~F~~ 232 (266)
T COG1018 191 AAPDGGREVYLCGPGPFMQAVRLALEALGVPDDRVHLEGFGP 232 (266)
T ss_pred cCCCCCCEEEEECCHHHHHHHHHHHHHcCCChhcEEEeecCC
Confidence 4565569999999999999 888889999999998886653
No 45
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=97.11 E-value=0.0002 Score=59.49 Aligned_cols=36 Identities=6% Similarity=0.027 Sum_probs=31.6
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcC
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAV 58 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~G 58 (122)
.+.++|+|||.+||+ ++++++.|++++++|.+.+.|
T Consensus 368 ~~~~vylCGP~~m~~av~~~L~~~Gv~~~~I~~E~F~~ 405 (405)
T TIGR01941 368 EDCEFYMCGPPMMNAAVIKMLEDLGVERENILLDDFGG 405 (405)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEeccCC
Confidence 467899999999999 888899999999988877654
No 46
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=97.09 E-value=0.00027 Score=53.45 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=29.4
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA 55 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~ 55 (122)
..+.++|+|||.+|++ ++.+++.|+++++++.+.
T Consensus 199 ~~~~~v~icGp~~m~~~v~~~l~~~Gv~~~~i~~E~ 234 (235)
T cd06217 199 LAGRRVYVCGPPAFVEAATRLLLELGVPRDRIRTEA 234 (235)
T ss_pred ccCCEEEEECCHHHHHHHHHHHHHcCCCHHHEeecc
Confidence 3568999999999999 888999999998877653
No 47
>PRK05802 hypothetical protein; Provisional
Probab=97.09 E-value=0.00041 Score=56.38 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=32.2
Q ss_pred CeeEEcCChhhhh--HhHHHHc--CCCCchHHHHHHcCCCcCCCCCCcccCCCeeee
Q 045945 25 KFPLVKSPGSLVS--RSVSKAF--GLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLM 77 (122)
Q Consensus 25 ~~~YvCGP~~fm~--~~~~~~~--~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~v 77 (122)
..+|+|||+.||. .+++++. +++- ..-+.-.-.|+.|.||.|.++.
T Consensus 255 ~~vy~CGP~~M~k~v~~~l~~~~~~i~~-------~~Sle~~M~CG~G~Cg~C~v~~ 304 (320)
T PRK05802 255 NLIHCGGSDILHYKIIEYLDKLNEKIKL-------SCSNNAKMCCGEGICGACTVRY 304 (320)
T ss_pred CEEEEECCHHHHHHHHHHHhhhcCCceE-------EEeCCCeeeCcCccCCeeEEEE
Confidence 5799999999999 6655542 2210 0112236689999999999995
No 48
>PRK08051 fre FMN reductase; Validated
Probab=97.08 E-value=0.00028 Score=54.02 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=29.7
Q ss_pred CCCeeEEcCChhhhh--HhHH-HHcCCCCchHHHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVS-KAFGLKSSSFKVSAM 56 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~-~~~~~~~~~L~a~~~ 56 (122)
.+.++|+|||.+||+ ++++ ++.|+++++++.+.+
T Consensus 193 ~~~~vyicGp~~m~~~v~~~l~~~~G~~~~~i~~e~f 229 (232)
T PRK08051 193 AEYDIYIAGRFEMAKIARELFCRERGAREEHLFGDAF 229 (232)
T ss_pred ccCEEEEECCHHHHHHHHHHHHHHcCCCHHHeecccc
Confidence 457899999999999 8888 899999999887754
No 49
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=97.05 E-value=0.0003 Score=53.35 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=29.6
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM 56 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~ 56 (122)
.+.++|+|||.+||+ ++.+++.|++++++|.+.+
T Consensus 196 ~~~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~~e~f 231 (232)
T cd06212 196 AGCDVYLCGPPPMIDAALPVLEMSGVPPDQIFYDKF 231 (232)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence 357899999999999 8889999999998887643
No 50
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=97.05 E-value=0.00032 Score=52.81 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=29.9
Q ss_pred CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945 21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA 55 (122)
Q Consensus 21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~ 55 (122)
+....++|+|||.+||+ ++.+++.|+++++++.+.
T Consensus 184 ~~~~~~vyicGp~~m~~~~~~~L~~~Gv~~~~i~~e~ 220 (222)
T cd06194 184 LTRDDVVYLCGAPSMVNAVRRRAFLAGAPMKRIYADP 220 (222)
T ss_pred ccCCCEEEEeCCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence 34568999999999999 888899999999887653
No 51
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=97.01 E-value=0.00042 Score=51.50 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=28.0
Q ss_pred CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHH
Q 045945 21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKV 53 (122)
Q Consensus 21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a 53 (122)
+..+..+|+|||.+||+ ++.+.+.|+++++++.
T Consensus 188 ~~~~~~~yvCGp~~m~~~~~~~L~~~gv~~~~i~~ 222 (223)
T cd00322 188 DDSGALVYICGPPAMAKAVREALVSLGVPEERIHT 222 (223)
T ss_pred cccCCEEEEECCHHHHHHHHHHHHHcCCCHHHccc
Confidence 34568999999999999 8888999999887664
No 52
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=96.97 E-value=0.00038 Score=52.77 Aligned_cols=32 Identities=9% Similarity=0.301 Sum_probs=28.2
Q ss_pred CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945 24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA 55 (122)
Q Consensus 24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~ 55 (122)
..++|+|||.+||+ ++.+++.|+++++++.+.
T Consensus 197 ~~~vyicGp~~mv~~~~~~l~~~G~~~~~i~~E~ 230 (231)
T cd06191 197 EREAFICGPAGMMDAVETALKELGMPPERIHTER 230 (231)
T ss_pred CCeEEEECCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence 57999999999999 888899999999887653
No 53
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=96.97 E-value=0.00035 Score=52.67 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=27.8
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS 54 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~ 54 (122)
.+.++|+|||.+||+ ++.+++.|+++++++.+
T Consensus 196 ~~~~v~icGp~~m~~~~~~~l~~~gv~~~~i~~e 229 (231)
T cd06215 196 KERTVFVCGPAGFMKAVKSLLAELGFPMSRFHQE 229 (231)
T ss_pred cCCeEEEECCHHHHHHHHHHHHHcCCCHHHeeee
Confidence 347999999999999 88889999998887754
No 54
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=96.93 E-value=0.00044 Score=52.32 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=29.7
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM 56 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~ 56 (122)
..+.++|+|||.+||+ ++.+++.|+++++++.+.+
T Consensus 191 ~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~E~F 227 (228)
T cd06209 191 DGDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYYEKF 227 (228)
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEeeecc
Confidence 3457899999999999 8888999999998887643
No 55
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=96.92 E-value=0.00053 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.916 Sum_probs=20.3
Q ss_pred cCCCcCCCCCCcccCCCeeeeeecc
Q 045945 57 AVYKLPYSCRAGACSTCAGLMVSGS 81 (122)
Q Consensus 57 ~Gi~i~~~Cr~G~CGtCkv~vl~G~ 81 (122)
.-+.+.++||.|+||+|.++| .|.
T Consensus 49 ~sL~fr~sCr~giCGsCam~I-NG~ 72 (239)
T PRK13552 49 PSLQFDFVCRAGICGSCAMVI-NGR 72 (239)
T ss_pred CCeeEeccCCCCCCCCceeEE-CCe
Confidence 457889999999999999987 454
No 56
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=96.89 E-value=0.00041 Score=53.04 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=27.3
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCC------chHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKS------SSFKVS 54 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~------~~L~a~ 54 (122)
...++|+|||.+||+ ++.+++.|+++ +++|.|
T Consensus 200 ~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~E 239 (241)
T cd06195 200 ETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITVE 239 (241)
T ss_pred ccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEEe
Confidence 568999999999999 88889999998 666654
No 57
>PRK05713 hypothetical protein; Provisional
Probab=96.89 E-value=0.00048 Score=55.22 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM 56 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~ 56 (122)
...++|+|||.+||+ .+++++.|++++++|.+.+
T Consensus 273 ~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~~i~~e~F 308 (312)
T PRK05713 273 RQTMALLCGSPASVERFARRLYLAGLPRNQLLADVF 308 (312)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence 347899999999999 8888999999999887754
No 58
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=96.88 E-value=0.00052 Score=51.52 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=28.1
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS 54 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~ 54 (122)
.++++|+|||.+||+ ++.+++.|+++++++.+
T Consensus 189 ~~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i~~e 222 (224)
T cd06187 189 ADHDIYICGPPAMVDATVDALLARGAPPERIHFD 222 (224)
T ss_pred ccCEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence 468999999999999 88889999999887764
No 59
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=96.84 E-value=0.00061 Score=51.74 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=28.7
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM 56 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~ 56 (122)
...++|+|||.+||+ ++.+++.|++.++++.+.+
T Consensus 200 ~~~~vyicGp~~m~~~~~~~l~~~G~~~~~i~~E~f 235 (236)
T cd06210 200 AKPDIYLCGPPGMVDAAFAAAREAGVPDEQVYLEKF 235 (236)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence 346899999999999 8888999999888876643
No 60
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=96.81 E-value=0.00059 Score=52.22 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=31.7
Q ss_pred CCCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945 20 APTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM 56 (122)
Q Consensus 20 ~~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~ 56 (122)
.+..+.++|+|||.+||+ ++.+++.|+++++++.+.+
T Consensus 205 ~~~~~~~v~icGp~~m~~~v~~~l~~~G~~~~~i~~e~f 243 (247)
T cd06184 205 LLPADADFYLCGPVPFMQAVREGLKALGVPAERIHYEVF 243 (247)
T ss_pred cCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeecc
Confidence 345678999999999999 8888999999998887655
No 61
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=96.77 E-value=0.00052 Score=55.77 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=29.6
Q ss_pred CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHc
Q 045945 24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMA 57 (122)
Q Consensus 24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~ 57 (122)
..++|+|||.+||+ ++++++.|++++++|.+.+.
T Consensus 301 ~~~vy~CGp~~mv~~~~~~L~~~Gv~~~~i~~E~F~ 336 (340)
T PRK11872 301 AFDMYLCGPPPMVEAVKQWLDEQALENYRLYYEKFT 336 (340)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEeeec
Confidence 46899999999999 88889999999998877543
No 62
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=96.74 E-value=0.00068 Score=55.60 Aligned_cols=35 Identities=6% Similarity=-0.017 Sum_probs=31.0
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHc
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMA 57 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~ 57 (122)
.+.++|+|||.+||+ ++++++.|+++++++.+.+.
T Consensus 357 ~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~I~~E~F~ 393 (399)
T PRK13289 357 PDADFYFCGPVPFMQFVAKQLLELGVPEERIHYEFFG 393 (399)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeeccC
Confidence 478999999999999 88889999999998887653
No 63
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=96.70 E-value=0.00075 Score=51.10 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=28.6
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS 54 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~ 54 (122)
..+.++|+|||.+||+ ++.+.+.|+++++++.+
T Consensus 191 ~~~~~v~~CGp~~~~~~~~~~l~~~G~~~~~i~~e 225 (227)
T cd06213 191 LAATEAYLCGPPAMIDAAIAVLRALGIAREHIHAD 225 (227)
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEecc
Confidence 3467999999999999 88888999999888765
No 64
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=96.69 E-value=0.00087 Score=49.96 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=28.7
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA 55 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~ 55 (122)
.+.++|+|||..|++ ++.+++.|++..+++.+.
T Consensus 175 ~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~~e~ 209 (211)
T cd06185 175 AGTHVYVCGPEGMMDAVRAAAAALGWPEARLHFER 209 (211)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCChhheEeee
Confidence 467999999999999 888899999998877654
No 65
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=96.63 E-value=0.00079 Score=54.23 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=30.3
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHc
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMA 57 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~ 57 (122)
.+.++|+|||.+||+ ++.+++.|++++++|.+.+.
T Consensus 297 ~~~~vy~CGp~~m~~~~~~~l~~~G~~~~~i~~e~F~ 333 (339)
T PRK07609 297 SGHQVYACGSPVMVYAARDDFVAAGLPAEEFFADAFT 333 (339)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeEEeecc
Confidence 357899999999999 88889999999998877653
No 66
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.54 E-value=0.0012 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=20.6
Q ss_pred HcCCCcCCCCCCcccCCCeeeeeecc
Q 045945 56 MAVYKLPYSCRAGACSTCAGLMVSGS 81 (122)
Q Consensus 56 ~~Gi~i~~~Cr~G~CGtCkv~vl~G~ 81 (122)
...+.+.++||.|+||+|.++| .|.
T Consensus 47 d~~l~fr~sCr~giCGsCa~~i-NG~ 71 (235)
T PRK12575 47 DETLSYRRSCREGICGSDAMNI-NGR 71 (235)
T ss_pred CCCeeeeccCCCCCCCCCeeEE-CCe
Confidence 4457789999999999999987 453
No 67
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=96.52 E-value=0.0014 Score=49.79 Aligned_cols=34 Identities=9% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA 55 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~ 55 (122)
.....+|+|||..|++ ++++++.|+++++++.+.
T Consensus 204 ~~~~~v~icGp~~mv~~v~~~l~~~G~~~~~i~~e~ 239 (241)
T cd06214 204 TEFDEAFLCGPEPMMDAVEAALLELGVPAERIHREL 239 (241)
T ss_pred ccCcEEEEECCHHHHHHHHHHHHHcCCCHHHeeccc
Confidence 4468999999999999 888899999998887653
No 68
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.44 E-value=0.0014 Score=51.79 Aligned_cols=23 Identities=17% Similarity=0.534 Sum_probs=19.8
Q ss_pred CCCcCCCCCCcccCCCeeeeeecc
Q 045945 58 VYKLPYSCRAGACSTCAGLMVSGS 81 (122)
Q Consensus 58 Gi~i~~~Cr~G~CGtCkv~vl~G~ 81 (122)
-+.+.++||.|+||+|.++| .|.
T Consensus 56 ~l~fr~sCr~giCGsCam~I-NG~ 78 (249)
T PRK08640 56 PVVWDMNCLEEVCGACSMVI-NGK 78 (249)
T ss_pred CeeEecccCCCCCCcCeeEE-CCc
Confidence 47889999999999999987 554
No 69
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=96.42 E-value=0.0018 Score=49.53 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=27.0
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS 54 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~ 54 (122)
...++|+|||.+|++ ++++++.|++ ++++.+
T Consensus 209 ~~~~vyvcGp~~m~~~~~~~l~~~Gv~-~~i~~e 241 (243)
T cd06216 209 ADRQVYACGPPGFLDAAEELLEAAGLA-DRLHTE 241 (243)
T ss_pred ccCeEEEECCHHHHHHHHHHHHHCCCc-cceeec
Confidence 357999999999999 8888999999 887765
No 70
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=96.37 E-value=0.0019 Score=48.93 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=27.3
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCC-CchHHHHHH
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLK-SSSFKVSAM 56 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~-~~~L~a~~~ 56 (122)
..+.++|+|||.+||+ .+.+++.|+. +++++.+.+
T Consensus 194 ~~~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~i~~e~f 231 (232)
T cd06190 194 LAEFEFYFAGPPPMVDAVQRMLMIEGVVPFDQIHFDRF 231 (232)
T ss_pred ccccEEEEECCHHHHHHHHHHHHHhCCCChHheeeccc
Confidence 3468999999999999 7778787765 777776643
No 71
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=96.34 E-value=0.0026 Score=44.86 Aligned_cols=26 Identities=35% Similarity=0.786 Sum_probs=17.4
Q ss_pred HHcCCCcCCCCCCcccCCCeeeeeecc
Q 045945 55 AMAVYKLPYSCRAGACSTCAGLMVSGS 81 (122)
Q Consensus 55 ~~~Gi~i~~~Cr~G~CGtCkv~vl~G~ 81 (122)
+..-+...++||.|+||+|.++| .|.
T Consensus 42 ~D~sLafr~sCr~giCGsCam~I-NG~ 67 (110)
T PF13085_consen 42 QDPSLAFRYSCRSGICGSCAMRI-NGR 67 (110)
T ss_dssp T-TT--B--SSSSSSSSTTEEEE-TTE
T ss_pred cCCCeEEEecCCCCCCCCCEEEE-CCc
Confidence 34578899999999999999987 443
No 72
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=96.06 E-value=0.0035 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.742 Sum_probs=20.1
Q ss_pred cCCCcCCCCCCcccCCCeeeeeecc
Q 045945 57 AVYKLPYSCRAGACSTCAGLMVSGS 81 (122)
Q Consensus 57 ~Gi~i~~~Cr~G~CGtCkv~vl~G~ 81 (122)
.-+.+.++||.|+||+|.++| .|.
T Consensus 88 ~sLsfr~sCr~giCGsCam~I-NG~ 111 (276)
T PLN00129 88 PSLTFRRSCREGICGSCAMNI-DGK 111 (276)
T ss_pred CCeEEeccCCCCCCCCCeeEE-CCc
Confidence 347789999999999999987 554
No 73
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=96.01 E-value=0.0044 Score=46.59 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=26.1
Q ss_pred CCCCCeeEEcCChhhhh---HhHHHHcCCCCchHH
Q 045945 21 PTRMKFPLVKSPGSLVS---RSVSKAFGLKSSSFK 52 (122)
Q Consensus 21 ~~~~~~~YvCGP~~fm~---~~~~~~~~~~~~~L~ 52 (122)
|..+.++|+|||.+||+ ++.+++.|+++++++
T Consensus 198 ~~~~~~~~icGp~~~~~~~~~~~l~~~G~~~~~i~ 232 (234)
T cd06183 198 PSEDTLVLVCGPPPMIEGAVKGLLKELGYKKDNVF 232 (234)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 34678999999999998 677788899887653
No 74
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=95.73 E-value=0.0042 Score=41.39 Aligned_cols=17 Identities=6% Similarity=0.118 Sum_probs=15.0
Q ss_pred CCCCCeeEEcCChhhhh
Q 045945 21 PTRMKFPLVKSPGSLVS 37 (122)
Q Consensus 21 ~~~~~~~YvCGP~~fm~ 37 (122)
...+.++|+|||.+||+
T Consensus 89 ~~~~~~v~iCGp~~m~~ 105 (109)
T PF00175_consen 89 DPDDTHVYICGPPPMMK 105 (109)
T ss_dssp CTTTEEEEEEEEHHHHH
T ss_pred CCCCCEEEEECCHHHHH
Confidence 35688999999999997
No 75
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=95.65 E-value=0.0074 Score=46.27 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=26.1
Q ss_pred CCCCCeeEEcCChhhhh--HhHHHH-cCCCCchHHH
Q 045945 21 PTRMKFPLVKSPGSLVS--RSVSKA-FGLKSSSFKV 53 (122)
Q Consensus 21 ~~~~~~~YvCGP~~fm~--~~~~~~-~~~~~~~L~a 53 (122)
+..+.++|+|||.+||+ ++.+++ .|+++.++|+
T Consensus 195 ~~~~~~vyicGp~~mv~~v~~~l~~~~g~~~~~i~~ 230 (235)
T cd06193 195 PAGDGYVWIAGEAGAVRALRRHLREERGVPRAQVYA 230 (235)
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHccCCCHHHEEE
Confidence 34467999999999999 777765 6999887653
No 76
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=95.64 E-value=0.0097 Score=51.90 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=46.1
Q ss_pred HcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945 43 AFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY 114 (122)
Q Consensus 43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~ 114 (122)
.+.+++|+ |+++.++||.||+-|. .|.|..|.|+| +|.. ...+.+|.+.+...++|.
T Consensus 7 ~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v-~g~~--------------~~~~~aC~~~~~~gm~v~ 71 (603)
T TIGR01973 7 ELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEV-EKFP--------------DKPVASCATPVTDGMKIS 71 (603)
T ss_pred EEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEE-CCCC--------------CCcccccCCCCCCCCEEE
Confidence 44567777 8999999999999996 89999999998 2210 014678999888888887
Q ss_pred ec
Q 045945 115 TH 116 (122)
Q Consensus 115 l~ 116 (122)
..
T Consensus 72 t~ 73 (603)
T TIGR01973 72 TN 73 (603)
T ss_pred eC
Confidence 64
No 77
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=95.61 E-value=0.007 Score=48.56 Aligned_cols=29 Identities=10% Similarity=0.246 Sum_probs=24.7
Q ss_pred CCeeEEcCChhhhh---HhHHHHcCCCCchHH
Q 045945 24 MKFPLVKSPGSLVS---RSVSKAFGLKSSSFK 52 (122)
Q Consensus 24 ~~~~YvCGP~~fm~---~~~~~~~~~~~~~L~ 52 (122)
+..+|+|||.+||+ ++.+++.|++.++++
T Consensus 267 ~~~vyiCGp~~mv~~~~~~~L~~~G~~~~~i~ 298 (300)
T PTZ00319 267 KVMALMCGPPPMLQMAVKPNLEKIGYTADNMF 298 (300)
T ss_pred CeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence 46899999999998 578899999987754
No 78
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.20 E-value=0.016 Score=51.25 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=45.7
Q ss_pred HcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945 43 AFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY 114 (122)
Q Consensus 43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~ 114 (122)
.+.+++|+ |+++.++|+.||+.|. .|.|+.|.|+| +|. .+.+.+|++.+...+.|.
T Consensus 12 ~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~~~~~aC~t~~~~Gm~v~ 75 (652)
T PRK12814 12 SVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------NRFVPACSTAVSEGMVIE 75 (652)
T ss_pred EEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------cceecCcCCCCCCCCEEE
Confidence 44566776 8999999999999997 79999999987 331 124778998888888887
Q ss_pred ecC
Q 045945 115 THK 117 (122)
Q Consensus 115 l~~ 117 (122)
...
T Consensus 76 t~~ 78 (652)
T PRK12814 76 TEN 78 (652)
T ss_pred eCc
Confidence 643
No 79
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.05 E-value=0.014 Score=54.84 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=27.4
Q ss_pred CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHH
Q 045945 21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFK 52 (122)
Q Consensus 21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~ 52 (122)
|..+.++|+|||.+||+ +++++..|+++++++
T Consensus 1126 ~~~~~~vyiCGP~~mv~~v~~~L~~~G~~~~~I~ 1159 (1167)
T PTZ00306 1126 PSKDLLVAICGPPVMQRAVKADLLALGYNMELVR 1159 (1167)
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeE
Confidence 33567899999999999 888899999988765
No 80
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=94.85 E-value=0.024 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.936 Sum_probs=19.0
Q ss_pred CCcCCCCCCcccCCCeeeeeecc
Q 045945 59 YKLPYSCRAGACSTCAGLMVSGS 81 (122)
Q Consensus 59 i~i~~~Cr~G~CGtCkv~vl~G~ 81 (122)
+.+.++|+.|+||+|.+.| .|.
T Consensus 47 l~~r~~C~~g~CGsCa~~I-nG~ 68 (251)
T PRK12386 47 LAVRWNCKAGKCGSCSAEI-NGR 68 (251)
T ss_pred CcccCCCCCCcCCCCEEEE-Ccc
Confidence 5788999999999999987 554
No 81
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=94.70 E-value=0.027 Score=45.95 Aligned_cols=58 Identities=21% Similarity=0.431 Sum_probs=44.0
Q ss_pred HcCC-CCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEE
Q 045945 43 AFGL-KSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI 113 (122)
Q Consensus 43 ~~~~-~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I 113 (122)
.+.+ ++|. |+++.++||.||+-|- .|.|+.|.|.| +|. .+.+-+|.+.+...++|
T Consensus 77 ~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~---------------~~lv~AC~tpV~eGM~V 140 (297)
T PTZ00305 77 PVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT---------------QNLVVSCATVALPGMSI 140 (297)
T ss_pred EEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC---------------cCcccccCCcCCCCCEE
Confidence 3455 5565 8999999999999994 58899999988 331 13566888888888888
Q ss_pred Eec
Q 045945 114 YTH 116 (122)
Q Consensus 114 ~l~ 116 (122)
...
T Consensus 141 ~T~ 143 (297)
T PTZ00305 141 ITD 143 (297)
T ss_pred EeC
Confidence 764
No 82
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=94.55 E-value=0.03 Score=50.02 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=45.2
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEE
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI 113 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I 113 (122)
+.+.+++|. |+++.++||.||+-|- .|.|+.|.|.|..+. ...+-+|.+.+...++|
T Consensus 9 ~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~~sC~~~v~~gm~v 73 (687)
T PRK09130 9 KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPVASCAMPVGEGMVI 73 (687)
T ss_pred EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCcccccCCCCCCCCEE
Confidence 345678877 9999999999999995 899999999984210 12345788777777777
Q ss_pred Eec
Q 045945 114 YTH 116 (122)
Q Consensus 114 ~l~ 116 (122)
...
T Consensus 74 ~T~ 76 (687)
T PRK09130 74 FTN 76 (687)
T ss_pred EeC
Confidence 654
No 83
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=94.50 E-value=0.013 Score=44.62 Aligned_cols=18 Identities=11% Similarity=-0.034 Sum_probs=15.0
Q ss_pred eeEEcCChhhhh--HhHHHH
Q 045945 26 FPLVKSPGSLVS--RSVSKA 43 (122)
Q Consensus 26 ~~YvCGP~~fm~--~~~~~~ 43 (122)
++|+|||.+||+ ++.++.
T Consensus 192 ~v~~CGP~~m~~~~~~~~~~ 211 (220)
T cd06197 192 EVYLCGPPALEKAVLEWLEG 211 (220)
T ss_pred cEEEECcHHHHHHHHHHhhh
Confidence 899999999999 665554
No 84
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=94.42 E-value=0.027 Score=43.38 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=23.1
Q ss_pred HHHHHHc------CCCcCCCCCCcccCCCeeeeeeccc
Q 045945 51 FKVSAMA------VYKLPYSCRAGACSTCAGLMVSGSV 82 (122)
Q Consensus 51 L~a~~~~------Gi~i~~~Cr~G~CGtCkv~vl~G~v 82 (122)
|+++... .+...++|+.|+||+|.++| .|..
T Consensus 28 l~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG~~ 64 (220)
T TIGR00384 28 LDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NGKP 64 (220)
T ss_pred HHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CCEE
Confidence 5555543 35577999999999999986 6643
No 85
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=94.29 E-value=0.054 Score=43.44 Aligned_cols=15 Identities=0% Similarity=-0.148 Sum_probs=13.6
Q ss_pred CCCeeEEcCChhhhh
Q 045945 23 RMKFPLVKSPGSLVS 37 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~ 37 (122)
.+.++|+|||.+||+
T Consensus 258 ~~~~vYiCGp~~mv~ 272 (307)
T PLN03116 258 NGAHIYFCGLKGMMP 272 (307)
T ss_pred CCcEEEEeCCHHHHH
Confidence 467899999999998
No 86
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=94.22 E-value=0.093 Score=39.25 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=49.2
Q ss_pred HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCCCCCCChh--------cccCCeEEeeceEECCC---eEEEecCC
Q 045945 51 FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSDGSFLDDN--------QMEKGYVLTCIAYPKSD---CVIYTHKE 118 (122)
Q Consensus 51 L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~~~Ls~~--------e~~~g~~LaCqs~~~sd---l~I~l~~~ 118 (122)
|+++..+||+++-.|. .-.|.+|.|.|-+-..+..+. ...++ ...+..||-||-...-+ ++|.+|+.
T Consensus 67 Ld~ah~n~idleGACEgslACSTCHViv~~~~yekl~e-p~DeE~DmLDlA~gLt~tSRLGCQI~l~keldG~~v~vP~a 145 (159)
T KOG3309|consen 67 LDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPE-PEDEENDMLDLAFGLTETSRLGCQIVLTKELDGMRVAVPEA 145 (159)
T ss_pred HHHHHHcCCCccccccccccccceEEEEcHHHHhcCCC-CcchHHHHHHhhhccccccccceEEEeccccCCcEEECccc
Confidence 9999999999999997 899999999997655443321 11111 13456899999997654 68888764
No 87
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=94.00 E-value=0.048 Score=44.66 Aligned_cols=36 Identities=17% Similarity=0.436 Sum_probs=27.5
Q ss_pred CCCCch--HHHHHHcCCCcC------CCCCCcccCCCeeeeeecc
Q 045945 45 GLKSSS--FKVSAMAVYKLP------YSCRAGACSTCAGLMVSGS 81 (122)
Q Consensus 45 ~~~~~~--L~a~~~~Gi~i~------~~Cr~G~CGtCkv~vl~G~ 81 (122)
.++++. |+++...++.++ ++|+.|+||+|.++| .|.
T Consensus 24 ~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i-nG~ 67 (329)
T PRK12577 24 EVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI-NGR 67 (329)
T ss_pred ECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE-CCe
Confidence 344544 788888877764 679999999999998 564
No 88
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=93.89 E-value=0.028 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=20.5
Q ss_pred CCCcCCCCCCcccCCCeeeeeeccc
Q 045945 58 VYKLPYSCRAGACSTCAGLMVSGSV 82 (122)
Q Consensus 58 Gi~i~~~Cr~G~CGtCkv~vl~G~v 82 (122)
.+.+.++||.|+||+|.++| .|..
T Consensus 51 ~l~fr~sCr~~iCGsCam~I-NG~p 74 (250)
T PRK07570 51 PVAFDHDCREGICGMCGLVI-NGRP 74 (250)
T ss_pred CeeEeccccCCcCCcceeEE-CCcc
Confidence 47899999999999999987 5553
No 89
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=93.84 E-value=0.022 Score=51.54 Aligned_cols=59 Identities=17% Similarity=0.392 Sum_probs=45.7
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEE
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI 113 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I 113 (122)
+.+.+++|. |+++..+|+.||+-|- .|.|..|.|.| +|. .+.+-+|.+.+...++|
T Consensus 12 ~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~---------------~~~~~aC~t~v~~gm~V 75 (797)
T PRK07860 12 VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ---------------RKPQASCTTTVTDGMVV 75 (797)
T ss_pred EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC---------------cccccccCCCCCCCcEE
Confidence 455677777 8999999999999995 79999999999 221 12355788888888887
Q ss_pred Eec
Q 045945 114 YTH 116 (122)
Q Consensus 114 ~l~ 116 (122)
+..
T Consensus 76 ~t~ 78 (797)
T PRK07860 76 KTQ 78 (797)
T ss_pred EeC
Confidence 764
No 90
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=93.70 E-value=0.052 Score=49.68 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=42.9
Q ss_pred HcCCCCch--HHHHHHcCCCcCCCC-----C-CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945 43 AFGLKSSS--FKVSAMAVYKLPYSC-----R-AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY 114 (122)
Q Consensus 43 ~~~~~~~~--L~a~~~~Gi~i~~~C-----r-~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~ 114 (122)
.+.+++|+ |+++.++|+.+|+-| . .|.|+.|.|.| +|. .+++|.+.+...++|.
T Consensus 10 ~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~~AC~t~v~dGM~V~ 71 (819)
T PRK08493 10 ECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RVYSCNTKAKEGMNIL 71 (819)
T ss_pred EEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------EeccccCCCCCCCEEE
Confidence 34567777 899999999999866 3 69999999988 331 1568888888778776
Q ss_pred ec
Q 045945 115 TH 116 (122)
Q Consensus 115 l~ 116 (122)
..
T Consensus 72 T~ 73 (819)
T PRK08493 72 TN 73 (819)
T ss_pred ec
Confidence 54
No 91
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=93.69 E-value=0.054 Score=43.08 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=16.4
Q ss_pred CCCeeEEcCChhhhh--HhHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKA 43 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~ 43 (122)
.+.++|+|||.+||+ .+.+++
T Consensus 244 ~~~~vyiCGp~~M~~~v~~~L~~ 266 (289)
T cd06201 244 DGAQIMVCGSRAMAQGVAAVLEE 266 (289)
T ss_pred CCcEEEEECCHHHHHHHHHHHHH
Confidence 367899999999999 444444
No 92
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=93.63 E-value=0.071 Score=41.34 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=19.4
Q ss_pred CCCeeEEcCChhhhh--HhHHHH-cCCCC
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKA-FGLKS 48 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~-~~~~~ 48 (122)
.+.++|+|||.+||+ +++++. .++++
T Consensus 205 ~~~~vy~CGp~~Mv~~~~~~l~~~~~~~~ 233 (248)
T PRK10926 205 ETSHVMLCGNPQMVRDTQQLLKETRQMTK 233 (248)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHhcCccc
Confidence 457899999999999 666644 55543
No 93
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=93.41 E-value=0.097 Score=43.66 Aligned_cols=16 Identities=0% Similarity=-0.035 Sum_probs=13.8
Q ss_pred CCCCeeEEcCChhhhh
Q 045945 22 TRMKFPLVKSPGSLVS 37 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~ 37 (122)
..+.++|+|||.+|++
T Consensus 317 ~~~~~vYiCGp~~M~~ 332 (367)
T PLN03115 317 KDNTYVYMCGLKGMEK 332 (367)
T ss_pred cCCeEEEEeCCHHHHH
Confidence 3468999999999988
No 94
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=93.39 E-value=0.062 Score=48.42 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=43.7
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEE
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI 113 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I 113 (122)
+++.++++. |+++..+|++||+-|= .|.|..|.|.+-.+. ..+-+|.+.+...++|
T Consensus 9 ~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~~~SC~tpv~dGM~I 72 (693)
T COG1034 9 KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KLVASCATPVTDGMVI 72 (693)
T ss_pred EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------ccccccccccCCCeEE
Confidence 456778877 9999999999999982 699999998884432 2456787766666666
Q ss_pred Eec
Q 045945 114 YTH 116 (122)
Q Consensus 114 ~l~ 116 (122)
...
T Consensus 73 ~T~ 75 (693)
T COG1034 73 STN 75 (693)
T ss_pred ecC
Confidence 553
No 95
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=93.13 E-value=0.059 Score=48.39 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=44.3
Q ss_pred HcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945 43 AFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY 114 (122)
Q Consensus 43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~ 114 (122)
.+.+++|+ |+++..+|+.||+-|- .|.|..|.|+| +|. ...+.+|.+.+...++|.
T Consensus 10 ~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~---------------~~~~~aC~~~~~~gm~v~ 73 (776)
T PRK09129 10 KVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA---------------PKPLPACATPVTDGMKVF 73 (776)
T ss_pred EEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC---------------CCcCcccCCCCCCCCEEE
Confidence 44567777 8999999999999997 59999999998 221 123567888888777776
Q ss_pred ec
Q 045945 115 TH 116 (122)
Q Consensus 115 l~ 116 (122)
..
T Consensus 74 t~ 75 (776)
T PRK09129 74 TR 75 (776)
T ss_pred cC
Confidence 54
No 96
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=93.10 E-value=0.084 Score=40.97 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=23.5
Q ss_pred HHHHHHcC------CCcCCCCCCcccCCCeeeeeeccc
Q 045945 51 FKVSAMAV------YKLPYSCRAGACSTCAGLMVSGSV 82 (122)
Q Consensus 51 L~a~~~~G------i~i~~~Cr~G~CGtCkv~vl~G~v 82 (122)
|+++...+ +...++|+.|+||+|.+.| .|..
T Consensus 32 l~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~~ 68 (232)
T PRK05950 32 LDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGKN 68 (232)
T ss_pred HHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCcC
Confidence 66666665 2346899999999999998 6653
No 97
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=92.94 E-value=0.11 Score=44.07 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=27.3
Q ss_pred CeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945 25 KFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM 56 (122)
Q Consensus 25 ~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~ 56 (122)
..+|+|||.+||+ ++.++..++|-.++|.|.+
T Consensus 402 ~sv~fCGP~~m~dsL~r~l~~~~~~i~~~h~E~F 435 (438)
T COG4097 402 RSVFFCGPIKMMDSLRRDLKKQNVPITNFHYEHF 435 (438)
T ss_pred ceEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 5899999999999 7778888998777777754
No 98
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=92.89 E-value=0.091 Score=41.18 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=25.9
Q ss_pred CCCCch--HHHHHHc-C-CCcCCCCCCcccCCCeeeeeeccc
Q 045945 45 GLKSSS--FKVSAMA-V-YKLPYSCRAGACSTCAGLMVSGSV 82 (122)
Q Consensus 45 ~~~~~~--L~a~~~~-G-i~i~~~Cr~G~CGtCkv~vl~G~v 82 (122)
.++++. |++++.+ | ....++|+.|.||.|.| +++|..
T Consensus 64 ~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~~ 104 (217)
T PRK11433 64 EVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGRR 104 (217)
T ss_pred ecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCEE
Confidence 344444 6666543 3 24789999999999999 667754
No 99
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=92.81 E-value=0.053 Score=42.90 Aligned_cols=26 Identities=31% Similarity=0.641 Sum_probs=21.4
Q ss_pred HcCCCcCCCCCCcccCCCeeeeeeccc
Q 045945 56 MAVYKLPYSCRAGACSTCAGLMVSGSV 82 (122)
Q Consensus 56 ~~Gi~i~~~Cr~G~CGtCkv~vl~G~v 82 (122)
..-+.+.++||.|+||+|.+.| .|..
T Consensus 44 d~~Lsfr~sCR~gICGSCam~I-NG~p 69 (234)
T COG0479 44 DPTLSFRRSCREGICGSCAMNI-NGKP 69 (234)
T ss_pred CCccchhhhccCCcCCcceeEE-CCcc
Confidence 4567899999999999999987 5543
No 100
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=92.66 E-value=0.069 Score=44.14 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=20.9
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCc
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSS 49 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~ 49 (122)
.++++|+|||.+|++ .+++++++.+.+
T Consensus 327 ~~~~vyiCGp~~M~~~v~~~L~~i~~~~~ 355 (384)
T cd06206 327 QGARVYVCGDGRMAPGVREVLKRIYAEKD 355 (384)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHHHHhC
Confidence 568999999999988 666666665554
No 101
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=92.48 E-value=0.092 Score=41.52 Aligned_cols=21 Identities=0% Similarity=-0.091 Sum_probs=16.7
Q ss_pred CCCeeEEcCChhhhh--HhHHHH
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKA 43 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~ 43 (122)
.+.++|+|||.+||+ .+++++
T Consensus 238 ~~~~vYiCGp~~m~~~v~~~L~~ 260 (286)
T cd06208 238 DNTHVYICGLKGMEPGVDDALTS 260 (286)
T ss_pred CCcEEEEeCCchHHHHHHHHHHH
Confidence 456899999999999 555554
No 102
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=92.20 E-value=0.15 Score=41.01 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHcCCC------cCCCCCCcccCCCeeeeeeccc
Q 045945 51 FKVSAMAVYK------LPYSCRAGACSTCAGLMVSGSV 82 (122)
Q Consensus 51 L~a~~~~Gi~------i~~~Cr~G~CGtCkv~vl~G~v 82 (122)
|+++...+.. ..++|+.|+||+|.+.| .|..
T Consensus 38 Ld~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG~~ 74 (279)
T PRK12576 38 TEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NGEP 74 (279)
T ss_pred HHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CCcE
Confidence 5555554433 36899999999999998 6643
No 103
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=91.84 E-value=0.095 Score=41.29 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=19.6
Q ss_pred cCCCcCCCCCCcccCCCeeeeeecc
Q 045945 57 AVYKLPYSCRAGACSTCAGLMVSGS 81 (122)
Q Consensus 57 ~Gi~i~~~Cr~G~CGtCkv~vl~G~ 81 (122)
..+...++|+.|+||+|.++|- |.
T Consensus 50 ~~l~fr~~C~~giCGsC~v~In-G~ 73 (244)
T PRK12385 50 PDLSYRWSCRMAICGSCGMMVN-NV 73 (244)
T ss_pred CCceeccCCCCCcCCCCcceEC-cc
Confidence 4566778999999999999984 63
No 104
>PLN02252 nitrate reductase [NADPH]
Probab=91.78 E-value=0.11 Score=47.94 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=24.2
Q ss_pred CCCeeEEcCChhhhh---HhHHHHcCCCCchH
Q 045945 23 RMKFPLVKSPGSLVS---RSVSKAFGLKSSSF 51 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~---~~~~~~~~~~~~~L 51 (122)
....+|+|||.+||+ +..++..|++++++
T Consensus 854 ~~~~vyiCGPp~Mi~~av~~~L~~~G~~~~~I 885 (888)
T PLN02252 854 DETLALMCGPPPMIEFACQPNLEKMGYDKDSI 885 (888)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHcCCCHHHE
Confidence 456799999999998 56889999997764
No 105
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=91.71 E-value=0.13 Score=39.88 Aligned_cols=19 Identities=11% Similarity=-0.094 Sum_probs=15.1
Q ss_pred CCeeEEcCCh-hhhh--HhHHH
Q 045945 24 MKFPLVKSPG-SLVS--RSVSK 42 (122)
Q Consensus 24 ~~~~YvCGP~-~fm~--~~~~~ 42 (122)
..++|+|||. +||+ ++++.
T Consensus 202 ~~~vy~CGp~~~m~~~v~~~l~ 223 (245)
T cd06200 202 GAAIYVCGSLQGMAPGVDAVLD 223 (245)
T ss_pred CcEEEEECCchhhhHHHHHHHH
Confidence 5789999999 9998 45443
No 106
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=91.33 E-value=0.19 Score=39.53 Aligned_cols=21 Identities=5% Similarity=-0.075 Sum_probs=16.9
Q ss_pred CCeeEEcCChh-hhh--HhHHHHc
Q 045945 24 MKFPLVKSPGS-LVS--RSVSKAF 44 (122)
Q Consensus 24 ~~~~YvCGP~~-fm~--~~~~~~~ 44 (122)
+..+|+|||.+ ||+ .+++++.
T Consensus 214 ~~~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 214 GAHIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred CCEEEEECCcccchHHHHHHHHHH
Confidence 45899999999 999 6666555
No 107
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=91.32 E-value=0.2 Score=40.67 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCeeEEcCChhhhh---HhHHHHcCCCCch
Q 045945 24 MKFPLVKSPGSLVS---RSVSKAFGLKSSS 50 (122)
Q Consensus 24 ~~~~YvCGP~~fm~---~~~~~~~~~~~~~ 50 (122)
...+++|||.+|++ ...+..+|+++++
T Consensus 253 ~~~~liCGPp~m~~~~~~~~le~Lg~~~~~ 282 (286)
T KOG0534|consen 253 ETLVLICGPPPMINGAAQGNLEKLGYNEDQ 282 (286)
T ss_pred CeEEEEECCHHHHhHHHHHHHHhcCCChHh
Confidence 58999999999997 5555668998765
No 108
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=90.82 E-value=0.14 Score=42.12 Aligned_cols=33 Identities=6% Similarity=0.077 Sum_probs=28.8
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS 54 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~ 54 (122)
....++|.|||..||+ +.-+..+|+.++.++.+
T Consensus 344 ~s~~DiY~~G~~~~M~~~~~~L~~L~~~~~~v~~E 378 (385)
T KOG3378|consen 344 LSECDIYMLGPNNYMRFVKQELVKLGVEPNKVQSE 378 (385)
T ss_pred hhhCceeeeCcHHHHHHHHHHHHHhcCCccceecc
Confidence 3468999999999999 88889999999987765
No 109
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=90.70 E-value=0.27 Score=36.79 Aligned_cols=37 Identities=16% Similarity=0.388 Sum_probs=28.5
Q ss_pred CCCCch--HHHHHHcCC-CcCCCCCCcccCCCeeeeeeccc
Q 045945 45 GLKSSS--FKVSAMAVY-KLPYSCRAGACSTCAGLMVSGSV 82 (122)
Q Consensus 45 ~~~~~~--L~a~~~~Gi-~i~~~Cr~G~CGtCkv~vl~G~v 82 (122)
.++++. |+.++..|+ ....+|+.|.||.|-|.| +|..
T Consensus 21 ~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~~ 60 (159)
T PRK09908 21 HAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGTA 60 (159)
T ss_pred ecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCcE
Confidence 445555 777777775 699999999999999976 6653
No 110
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=89.87 E-value=0.28 Score=41.25 Aligned_cols=14 Identities=0% Similarity=-0.016 Sum_probs=12.7
Q ss_pred CCeeEEcCChhhhh
Q 045945 24 MKFPLVKSPGSLVS 37 (122)
Q Consensus 24 ~~~~YvCGP~~fm~ 37 (122)
+.++|+|||.+|++
T Consensus 363 ~~~vYiCGp~~M~~ 376 (411)
T TIGR03224 363 NTYIYICGLKGMEE 376 (411)
T ss_pred CcEEEEECCHHHHH
Confidence 47899999999987
No 111
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=88.58 E-value=0.17 Score=40.26 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=34.5
Q ss_pred eeEEcCChhhhhHhHHHHcCCCCch-----HHHHHH------cCCCcCCCCCCcccCCCeeee
Q 045945 26 FPLVKSPGSLVSRSVSKAFGLKSSS-----FKVSAM------AVYKLPYSCRAGACSTCAGLM 77 (122)
Q Consensus 26 ~~YvCGP~~fm~~~~~~~~~~~~~~-----L~a~~~------~Gi~i~~~Cr~G~CGtCkv~v 77 (122)
+||---|+.=.++..++.++|.-.. |++++. --+.+..+||.|+||+|...+
T Consensus 50 eIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI 112 (288)
T KOG3049|consen 50 EIYRWNPDNPGDKPHLQTYEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI 112 (288)
T ss_pred EEEecCCCCCCCCccceeeeecHHhcchHHHHHHHHhhcccCCceehhhhhhccccccceecc
Confidence 5677666554443333455554433 777754 345588999999999999876
No 112
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=87.91 E-value=0.28 Score=40.48 Aligned_cols=24 Identities=8% Similarity=-0.101 Sum_probs=18.4
Q ss_pred CeeEEcCChh-hhh--HhHHHHcCCCC
Q 045945 25 KFPLVKSPGS-LVS--RSVSKAFGLKS 48 (122)
Q Consensus 25 ~~~YvCGP~~-fm~--~~~~~~~~~~~ 48 (122)
+++|+|||.+ |++ .+++.+++...
T Consensus 330 ~~vYvCG~~~~M~~~V~~~L~~~~~~~ 356 (382)
T cd06207 330 GVIYVCGSTWKMPPDVQEAFEEILKKH 356 (382)
T ss_pred CEEEEECCcccccHHHHHHHHHHHHHh
Confidence 5899999998 998 66666665543
No 113
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=87.85 E-value=0.34 Score=40.49 Aligned_cols=16 Identities=6% Similarity=-0.112 Sum_probs=13.8
Q ss_pred CCCCeeEEcCChhhhh
Q 045945 22 TRMKFPLVKSPGSLVS 37 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~ 37 (122)
..++++|+|||..|++
T Consensus 348 ~~~~~iYvCG~~~M~~ 363 (406)
T cd06202 348 REGGHIYVCGDVTMAE 363 (406)
T ss_pred hCCCEEEEeCCCchHH
Confidence 3578999999999987
No 114
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=87.62 E-value=0.34 Score=39.62 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=12.2
Q ss_pred CeeEEcCChhhhh
Q 045945 25 KFPLVKSPGSLVS 37 (122)
Q Consensus 25 ~~~YvCGP~~fm~ 37 (122)
.++|+|||.+||+
T Consensus 264 ~~vylCGPp~Mm~ 276 (325)
T PTZ00274 264 KIIMLCGPDQLLN 276 (325)
T ss_pred cEEEEeCCHHHHH
Confidence 5799999999999
No 115
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=87.57 E-value=0.38 Score=33.91 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=13.7
Q ss_pred CCCCCCeeEEcCChhhhh
Q 045945 20 APTRMKFPLVKSPGSLVS 37 (122)
Q Consensus 20 ~~~~~~~~YvCGP~~fm~ 37 (122)
......-+|+|||.+|++
T Consensus 132 ~~~~~~~V~~CGP~~m~~ 149 (156)
T PF08030_consen 132 QSSGRVAVFVCGPPSMVD 149 (156)
T ss_dssp STT-EEEEEEES-HHHHH
T ss_pred CCCCcEEEEEcCcHHHHH
Confidence 455678899999999998
No 116
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=87.23 E-value=0.61 Score=36.51 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.5
Q ss_pred CCCeeEEcCChhhhh--HhHHHHcCCCCc
Q 045945 23 RMKFPLVKSPGSLVS--RSVSKAFGLKSS 49 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~ 49 (122)
...++|+|||.+||+ .+.+...+++..
T Consensus 191 ~~~~v~~cGp~~M~~~v~~~~~~~g~~~~ 219 (252)
T COG0543 191 EVDDVYICGPPAMVKAVREKLKEYGVPIS 219 (252)
T ss_pred cCCEEEEECCHHHHHHHHHHHHhcCCchh
Confidence 568999999999999 777777777654
No 117
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=87.15 E-value=0.69 Score=34.24 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=26.5
Q ss_pred cCCCCch--HHHHHHc-C-CCcCCCCCCcccCCCeeeeeecc
Q 045945 44 FGLKSSS--FKVSAMA-V-YKLPYSCRAGACSTCAGLMVSGS 81 (122)
Q Consensus 44 ~~~~~~~--L~a~~~~-G-i~i~~~Cr~G~CGtCkv~vl~G~ 81 (122)
+.++++. |+.++.. | ..+..+|+.|.||+|-|.| +|+
T Consensus 13 ~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~ 53 (148)
T TIGR03193 13 DAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR 53 (148)
T ss_pred eecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence 3455554 6666542 4 4588999999999999977 664
No 118
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=84.27 E-value=0.62 Score=39.07 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=14.6
Q ss_pred CCCeeEEcCChh-hhh--HhHHH
Q 045945 23 RMKFPLVKSPGS-LVS--RSVSK 42 (122)
Q Consensus 23 ~~~~~YvCGP~~-fm~--~~~~~ 42 (122)
.++++|+|||.+ |++ .++++
T Consensus 362 ~~~~vYvCGp~~~M~~~V~~~L~ 384 (416)
T cd06204 362 EGAYIYVCGDAKNMARDVEKTLL 384 (416)
T ss_pred cCCEEEEECCcccchHHHHHHHH
Confidence 468999999998 666 44443
No 119
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=84.09 E-value=0.72 Score=38.39 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=25.0
Q ss_pred CCCCeeEEcCChhhhh--HhHHHHcCCCCch
Q 045945 22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSS 50 (122)
Q Consensus 22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~ 50 (122)
+.+..+|+|||.-|.+ -.+++++||..+.
T Consensus 372 PEDceyYmCGPp~mNasvikmL~dlGVE~en 402 (410)
T COG2871 372 PEDCEYYMCGPPLMNASVIKMLKDLGVEREN 402 (410)
T ss_pred chheeEEeeCcchhhHHHHHHHHhcCccccc
Confidence 3489999999988877 8899999999876
No 120
>PRK06214 sulfite reductase; Provisional
Probab=83.24 E-value=0.91 Score=39.74 Aligned_cols=15 Identities=7% Similarity=-0.130 Sum_probs=12.8
Q ss_pred CCCeeEEcCChhhhh
Q 045945 23 RMKFPLVKSPGSLVS 37 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~ 37 (122)
.++++|+|||..+|.
T Consensus 476 ~~a~iYVCGp~~~M~ 490 (530)
T PRK06214 476 EGAHFYVCGDAKRMA 490 (530)
T ss_pred CCcEEEEeCChHHHH
Confidence 478999999998883
No 121
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=82.86 E-value=0.71 Score=37.90 Aligned_cols=15 Identities=7% Similarity=-0.082 Sum_probs=12.4
Q ss_pred CCCeeEEcCCh-hhhh
Q 045945 23 RMKFPLVKSPG-SLVS 37 (122)
Q Consensus 23 ~~~~~YvCGP~-~fm~ 37 (122)
.++++|+|||. .|+.
T Consensus 306 ~~~~vYvCG~~~~M~~ 321 (360)
T cd06199 306 EGAHFYVCGDAKRMAK 321 (360)
T ss_pred CCCEEEEECCCccccH
Confidence 46899999999 6766
No 122
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=82.17 E-value=1.5 Score=36.56 Aligned_cols=14 Identities=7% Similarity=-0.249 Sum_probs=11.0
Q ss_pred CCCeeEEcCChhhh
Q 045945 23 RMKFPLVKSPGSLV 36 (122)
Q Consensus 23 ~~~~~YvCGP~~fm 36 (122)
.++++|+|||...|
T Consensus 344 ~~~~iYvCG~~~~M 357 (398)
T cd06203 344 SNAKIYVCGDAKGM 357 (398)
T ss_pred CCcEEEEECCcchh
Confidence 56899999996544
No 123
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=78.21 E-value=0.69 Score=34.19 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=12.8
Q ss_pred eEEcCChhhhh--HhHHH
Q 045945 27 PLVKSPGSLVS--RSVSK 42 (122)
Q Consensus 27 ~YvCGP~~fm~--~~~~~ 42 (122)
+|+|||.+|++ +....
T Consensus 179 v~~CGp~~~~~~~~~~~~ 196 (210)
T cd06186 179 VVVCGPPGLVDDVRNAVA 196 (210)
T ss_pred EEEECchhhccHHHHHHh
Confidence 89999999999 44443
No 124
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=77.57 E-value=0.96 Score=39.87 Aligned_cols=22 Identities=5% Similarity=-0.081 Sum_probs=16.6
Q ss_pred CCCeeEEcC-Chhhhh--HhHHHHc
Q 045945 23 RMKFPLVKS-PGSLVS--RSVSKAF 44 (122)
Q Consensus 23 ~~~~~YvCG-P~~fm~--~~~~~~~ 44 (122)
.++++|+|| |..|++ .++++++
T Consensus 543 ~~a~vYvCG~~~~M~~~V~~~L~~i 567 (597)
T TIGR01931 543 EGAHIYVCGDAKKMAKDVHQALLDI 567 (597)
T ss_pred CCcEEEEECCCccccHHHHHHHHHH
Confidence 468999999 888887 5555544
No 125
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=75.75 E-value=3.2 Score=27.67 Aligned_cols=37 Identities=16% Similarity=0.426 Sum_probs=27.7
Q ss_pred HhHHHHcCCCCchHHHHHH----cC----CC-cCCCCCCcccCCCe
Q 045945 38 RSVSKAFGLKSSSFKVSAM----AV----YK-LPYSCRAGACSTCA 74 (122)
Q Consensus 38 ~~~~~~~~~~~~~L~a~~~----~G----i~-i~~~Cr~G~CGtCk 74 (122)
.++++.|..|++.+++.+. -| +. .+.+|..|.|..|.
T Consensus 20 ~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~~~~~gC~sGsCk~C~ 65 (78)
T PRK15431 20 AQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGSCKSCP 65 (78)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccCCCCCCCCCCCCCC
Confidence 6788899999888766643 23 33 66789999999886
No 126
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=75.11 E-value=1.8 Score=25.04 Aligned_cols=18 Identities=33% Similarity=0.820 Sum_probs=14.2
Q ss_pred CCCCCcccCCCeeeeeec
Q 045945 63 YSCRAGACSTCAGLMVSG 80 (122)
Q Consensus 63 ~~Cr~G~CGtCkv~vl~G 80 (122)
-.|+-|.|+.|.+....+
T Consensus 4 M~CG~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 4 MACGVGACGGCVVPVKDG 21 (40)
T ss_dssp -SSSSSSS-TTEEECSST
T ss_pred ccCCCcEeCCcEeeeecC
Confidence 369999999999998865
No 127
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=74.87 E-value=2.1 Score=31.68 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=21.5
Q ss_pred HHHHHHc-C-CCcCCCCCCcccCCCeeeeeecc
Q 045945 51 FKVSAMA-V-YKLPYSCRAGACSTCAGLMVSGS 81 (122)
Q Consensus 51 L~a~~~~-G-i~i~~~Cr~G~CGtCkv~vl~G~ 81 (122)
++.+... | .....+|..|.||.|.|.| +|.
T Consensus 24 l~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~ 55 (151)
T TIGR03198 24 SDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK 55 (151)
T ss_pred HHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence 4444432 4 3477789999999999987 664
No 128
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=72.27 E-value=2.3 Score=37.71 Aligned_cols=15 Identities=7% Similarity=-0.102 Sum_probs=12.4
Q ss_pred CCCeeEEcCChhhhh
Q 045945 23 RMKFPLVKSPGSLVS 37 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~ 37 (122)
.++++|||||...|.
T Consensus 546 ~ga~~YVCG~~~~M~ 560 (600)
T PRK10953 546 DGAHIYVCGDANRMA 560 (600)
T ss_pred CCcEEEEECCCccch
Confidence 578999999987664
No 129
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=65.48 E-value=7.3 Score=33.52 Aligned_cols=32 Identities=13% Similarity=0.333 Sum_probs=24.2
Q ss_pred CCCch--HHHHHHc-C-CCcCCCCCCcccCCCeeee
Q 045945 46 LKSSS--FKVSAMA-V-YKLPYSCRAGACSTCAGLM 77 (122)
Q Consensus 46 ~~~~~--L~a~~~~-G-i~i~~~Cr~G~CGtCkv~v 77 (122)
++++. ++.++.. | -....+|..|.||.|-|-|
T Consensus 15 ~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~ 50 (467)
T TIGR02963 15 VDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV 50 (467)
T ss_pred CCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence 44444 6666643 5 4589999999999999988
No 130
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=64.12 E-value=4 Score=25.61 Aligned_cols=38 Identities=21% Similarity=0.623 Sum_probs=22.6
Q ss_pred HhHHHHcCCCCchHHHH----HHcCC----CcCCCCCCcccCCCeee
Q 045945 38 RSVSKAFGLKSSSFKVS----AMAVY----KLPYSCRAGACSTCAGL 76 (122)
Q Consensus 38 ~~~~~~~~~~~~~L~a~----~~~Gi----~i~~~Cr~G~CGtCkv~ 76 (122)
.++++.|+++++.+++. .+.|. ..+..| .|.|+.|...
T Consensus 18 ~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~~~~-~~~C~~C~~~ 63 (69)
T PF09012_consen 18 AELAREFGISPEAVEAMLEQLIRKGYIRKVDMSSCC-GGSCSSCGPA 63 (69)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE--S-SSSSSS-SS-
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCCCC-CCCCCCCCCc
Confidence 67889999999885554 45553 345555 8899999743
No 131
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=63.38 E-value=4.8 Score=37.39 Aligned_cols=41 Identities=17% Similarity=0.495 Sum_probs=33.2
Q ss_pred HHcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeecccc
Q 045945 42 KAFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVD 83 (122)
Q Consensus 42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~ 83 (122)
+++.+++|. |+++.++||.||+-|- -|.|-+|.|. ++|...
T Consensus 13 ~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVE-idG~l~ 61 (978)
T COG3383 13 RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVE-IDGKLV 61 (978)
T ss_pred eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEE-ecCcee
Confidence 345677777 9999999999999994 3889999998 577633
No 132
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=62.87 E-value=7.8 Score=35.76 Aligned_cols=37 Identities=16% Similarity=0.430 Sum_probs=26.4
Q ss_pred CCCch--HHHHHH-cCC-CcCCCCCCcccCCCeeeeeecccc
Q 045945 46 LKSSS--FKVSAM-AVY-KLPYSCRAGACSTCAGLMVSGSVD 83 (122)
Q Consensus 46 ~~~~~--L~a~~~-~Gi-~i~~~Cr~G~CGtCkv~vl~G~v~ 83 (122)
+++++ |+.++. -|+ .+..+|..|.||.|-|.| +|+..
T Consensus 12 ~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~~~ 52 (848)
T TIGR03311 12 VNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGKAV 52 (848)
T ss_pred CCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCeEE
Confidence 34444 666654 354 688999999999999977 66543
No 133
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=55.62 E-value=7.6 Score=35.06 Aligned_cols=15 Identities=7% Similarity=-0.064 Sum_probs=13.2
Q ss_pred CCCeeEEcCChh-hhh
Q 045945 23 RMKFPLVKSPGS-LVS 37 (122)
Q Consensus 23 ~~~~~YvCGP~~-fm~ 37 (122)
.++|+|+||+.. |..
T Consensus 591 ~~g~iYvCGd~~~Ma~ 606 (645)
T KOG1158|consen 591 EGGHIYVCGDAKGMAK 606 (645)
T ss_pred CCcEEEEecCCccchH
Confidence 489999999999 776
No 134
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=53.73 E-value=12 Score=35.01 Aligned_cols=38 Identities=13% Similarity=-0.017 Sum_probs=26.7
Q ss_pred CCCCch--HHHHHHcCCC-cCC-CCCCcccCCCeeeeeecccc
Q 045945 45 GLKSSS--FKVSAMAVYK-LPY-SCRAGACSTCAGLMVSGSVD 83 (122)
Q Consensus 45 ~~~~~~--L~a~~~~Gi~-i~~-~Cr~G~CGtCkv~vl~G~v~ 83 (122)
.+++++ |+.++..|+. +.. .|..|.||.|-|.| +|...
T Consensus 11 ~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~~v 52 (951)
T TIGR03313 11 ECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGVLK 52 (951)
T ss_pred ecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCeEe
Confidence 344444 6777766654 666 69999999999976 66543
No 135
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=51.85 E-value=8.8 Score=34.17 Aligned_cols=25 Identities=4% Similarity=-0.149 Sum_probs=18.1
Q ss_pred CCCCCCeeEEcC-Chhhhh--HhHHHHc
Q 045945 20 APTRMKFPLVKS-PGSLVS--RSVSKAF 44 (122)
Q Consensus 20 ~~~~~~~~YvCG-P~~fm~--~~~~~~~ 44 (122)
....++++|||| +.+|-. .+++.++
T Consensus 530 ~l~~ga~~YVCGd~~~Ma~dV~~AL~~i 557 (587)
T COG0369 530 WLEEGAHIYVCGDAKGMAKDVEEALLDI 557 (587)
T ss_pred HHHCCCEEEEeCCCccchHHHHHHHHHH
Confidence 345569999999 888877 5555554
No 136
>PLN00192 aldehyde oxidase
Probab=49.71 E-value=21 Score=34.80 Aligned_cols=27 Identities=19% Similarity=0.529 Sum_probs=21.6
Q ss_pred HHHHHHc-C-CCcCCCCCCcccCCCeeee
Q 045945 51 FKVSAMA-V-YKLPYSCRAGACSTCAGLM 77 (122)
Q Consensus 51 L~a~~~~-G-i~i~~~Cr~G~CGtCkv~v 77 (122)
|+.++.. | -....+|+.|.||.|-|-|
T Consensus 27 l~~LR~~~~ltgtK~gC~~G~CGaCtV~v 55 (1344)
T PLN00192 27 LEFLRTQTPFKSVKLGCGEGGCGACVVLL 55 (1344)
T ss_pred HHHHHHhhCCCCcCCCCCCCcCCCcEEEE
Confidence 6666543 4 4588999999999999988
No 137
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=46.81 E-value=8.7 Score=36.47 Aligned_cols=49 Identities=10% Similarity=0.327 Sum_probs=33.6
Q ss_pred CeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCC-CcccCCCeeee
Q 045945 25 KFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCR-AGACSTCAGLM 77 (122)
Q Consensus 25 ~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr-~G~CGtCkv~v 77 (122)
..+.+-||..||+ .++.+ --++.+ ...-+-++.+-.|. .|+||.|++++
T Consensus 936 D~vi~iGs~~mm~~~~~~~~-~~~~~~---~~~i~svns~M~c~m~giC~qC~~~~ 987 (1028)
T PRK06567 936 DIVIINASPEIIEELQSLKN-EIFGEN---TEIIVSVNSSMQCMMKGICGQCIQKV 987 (1028)
T ss_pred cEEEEeCCHHHHHHHHHHHh-hhccCC---CcEEEecCcHHHHHhhhhhhhheEEe
Confidence 5789999999999 43331 011111 11234567888999 99999999998
No 138
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=42.78 E-value=23 Score=33.28 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=24.7
Q ss_pred CCCch--HHHHHHcCCC-cCCC-CCCcccCCCeeeeeeccc
Q 045945 46 LKSSS--FKVSAMAVYK-LPYS-CRAGACSTCAGLMVSGSV 82 (122)
Q Consensus 46 ~~~~~--L~a~~~~Gi~-i~~~-Cr~G~CGtCkv~vl~G~v 82 (122)
+++++ |+.++..|+. ...+ |..|.||.|-|.| +|..
T Consensus 16 ~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~~ 55 (956)
T PRK09800 16 VNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGNI 55 (956)
T ss_pred cCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCeE
Confidence 44444 6666665544 5555 7899999999977 6653
No 139
>PLN02906 xanthine dehydrogenase
Probab=41.68 E-value=27 Score=33.90 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=20.8
Q ss_pred HHHHHHcC-CCcCCCCCCcccCCCeeeee
Q 045945 51 FKVSAMAV-YKLPYSCRAGACSTCAGLMV 78 (122)
Q Consensus 51 L~a~~~~G-i~i~~~Cr~G~CGtCkv~vl 78 (122)
|+.++..| .....+|+.|.||.|-|-|-
T Consensus 5 l~~LR~~~l~g~k~gC~~g~CGaCtv~~~ 33 (1319)
T PLN02906 5 LEYLRDLGLTGTKLGCGEGGCGACTVMVS 33 (1319)
T ss_pred HHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence 34444444 34789999999999999885
No 140
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=38.77 E-value=34 Score=33.36 Aligned_cols=33 Identities=15% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCCch--HHHHHHc-C-CCcCCCCCCcccCCCeeeee
Q 045945 46 LKSSS--FKVSAMA-V-YKLPYSCRAGACSTCAGLMV 78 (122)
Q Consensus 46 ~~~~~--L~a~~~~-G-i~i~~~Cr~G~CGtCkv~vl 78 (122)
++++. |+.++.. | .....+|..|.||.|-|-|-
T Consensus 17 ~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~ 53 (1330)
T TIGR02969 17 VDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS 53 (1330)
T ss_pred CCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence 44444 6666542 4 45889999999999999873
No 141
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.00 E-value=25 Score=31.50 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=17.4
Q ss_pred CeeEEcCChhhhh--HhHHHHcC
Q 045945 25 KFPLVKSPGSLVS--RSVSKAFG 45 (122)
Q Consensus 25 ~~~YvCGP~~fm~--~~~~~~~~ 45 (122)
.-+|+|||++|.+ ++.+.+..
T Consensus 610 vgVf~CGp~~l~~~~~~~~~~~~ 632 (646)
T KOG0039|consen 610 VGVFSCGPPGLVKELRKLCNDFS 632 (646)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcc
Confidence 6899999999999 77776643
No 142
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=36.03 E-value=26 Score=26.24 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCCCch--HHHHHH-cCC-CcCCCCCCcccCCCeeeeeecccc
Q 045945 45 GLKSSS--FKVSAM-AVY-KLPYSCRAGACSTCAGLMVSGSVD 83 (122)
Q Consensus 45 ~~~~~~--L~a~~~-~Gi-~i~~~Cr~G~CGtCkv~vl~G~v~ 83 (122)
.+.+.. +++++. -|+ ...++|..|.||.|-|-+ +|+..
T Consensus 16 ~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv-DG~~v 57 (156)
T COG2080 16 DVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV-DGEAV 57 (156)
T ss_pred EeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE-CCeEe
Confidence 444444 555552 232 478999999999999855 77644
No 143
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=26.75 E-value=40 Score=30.28 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=35.1
Q ss_pred CCCCCCeeEEcCChhhhhHhHHHHcCCCCch--HHHHHHcCCCcCCCC---C---CcccCCCeeeeee
Q 045945 20 APTRMKFPLVKSPGSLVSRSVSKAFGLKSSS--FKVSAMAVYKLPYSC---R---AGACSTCAGLMVS 79 (122)
Q Consensus 20 ~~~~~~~~YvCGP~~fm~~~~~~~~~~~~~~--L~a~~~~Gi~i~~~C---r---~G~CGtCkv~vl~ 79 (122)
|++..-++||=|-. .-+++|. |.+....|++||.-| | .|.|..|.+.|-.
T Consensus 28 a~~~~ievfvd~~~----------v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek 85 (708)
T KOG2282|consen 28 ASPNKIEVFVDDQS----------VMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK 85 (708)
T ss_pred CCccceEEEECCee----------EeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence 44444566655433 3356666 888899999999999 3 6889988887754
No 144
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=25.88 E-value=35 Score=33.07 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=22.8
Q ss_pred CCCch-HHHHHHcCC---CcCCCCCCcccCCCeeeeee
Q 045945 46 LKSSS-FKVSAMAVY---KLPYSCRAGACSTCAGLMVS 79 (122)
Q Consensus 46 ~~~~~-L~a~~~~Gi---~i~~~Cr~G~CGtCkv~vl~ 79 (122)
++++. |-.-+|... ...++|+.|.||+|.|-|-.
T Consensus 17 vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 17 LPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSK 54 (1257)
T ss_pred CCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEec
Confidence 45554 433444333 26889999999999987743
No 145
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=25.46 E-value=41 Score=29.36 Aligned_cols=15 Identities=7% Similarity=-0.303 Sum_probs=11.1
Q ss_pred CCCeeEEcCChhhhh
Q 045945 23 RMKFPLVKSPGSLVS 37 (122)
Q Consensus 23 ~~~~~YvCGP~~fm~ 37 (122)
..-.+|+|||...-.
T Consensus 22 ~~v~mYvCGpTvy~~ 36 (490)
T PRK14536 22 GHVRLYGCGPTVYNY 36 (490)
T ss_pred CceEEEeeCCccCCC
Confidence 346899999986543
No 146
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=25.02 E-value=23 Score=29.06 Aligned_cols=14 Identities=14% Similarity=-0.071 Sum_probs=10.4
Q ss_pred CCCCeeEEcCChhh
Q 045945 22 TRMKFPLVKSPGSL 35 (122)
Q Consensus 22 ~~~~~~YvCGP~~f 35 (122)
+..-.+|+|||...
T Consensus 6 ~~~v~~Y~CGPTVY 19 (300)
T PF01406_consen 6 PGKVRMYVCGPTVY 19 (300)
T ss_dssp TTEEEEEEEEEBTT
T ss_pred CCeEEEEcCCCCCC
Confidence 33467999999864
No 147
>PLN02946 cysteine-tRNA ligase
Probab=21.87 E-value=54 Score=29.17 Aligned_cols=14 Identities=7% Similarity=-0.389 Sum_probs=10.5
Q ss_pred CCeeEEcCChhhhh
Q 045945 24 MKFPLVKSPGSLVS 37 (122)
Q Consensus 24 ~~~~YvCGP~~fm~ 37 (122)
.-.+|+|||...-.
T Consensus 80 ~v~~Y~CGpTvYd~ 93 (557)
T PLN02946 80 KVGMYVCGVTAYDL 93 (557)
T ss_pred ceeEEEeCCccCCC
Confidence 46789999986543
No 148
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=21.22 E-value=50 Score=28.83 Aligned_cols=15 Identities=7% Similarity=-0.217 Sum_probs=11.2
Q ss_pred CCCCCeeEEcCChhh
Q 045945 21 PTRMKFPLVKSPGSL 35 (122)
Q Consensus 21 ~~~~~~~YvCGP~~f 35 (122)
|...-.+|+|||...
T Consensus 18 p~~~v~mY~CGpTVY 32 (481)
T PRK14534 18 NFSDVKVYACGPTVY 32 (481)
T ss_pred cCCceEEEeCCCCCC
Confidence 555678999999543
No 149
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.09 E-value=55 Score=28.57 Aligned_cols=11 Identities=18% Similarity=-0.025 Sum_probs=9.4
Q ss_pred CeeEEcCChhh
Q 045945 25 KFPLVKSPGSL 35 (122)
Q Consensus 25 ~~~YvCGP~~f 35 (122)
-.+|||||...
T Consensus 23 V~mYvCGpTVY 33 (464)
T COG0215 23 VKMYVCGPTVY 33 (464)
T ss_pred EEEEecCCccC
Confidence 78999999864
No 150
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=21.09 E-value=61 Score=24.82 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=14.1
Q ss_pred cccCCCCCCeeEEcCChhhhh
Q 045945 17 FQTAPTRMKFPLVKSPGSLVS 37 (122)
Q Consensus 17 ~~~~~~~~~~~YvCGP~~fm~ 37 (122)
|..-++....+|+|||...-.
T Consensus 13 ~~p~~~~~~~~y~~gpt~y~~ 33 (213)
T cd00672 13 FVPLNPGLVTMYVCGPTVYDY 33 (213)
T ss_pred eecCCCCCceEEEeCCccCCC
Confidence 333345667999999977643
Done!