BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045946
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TJM|A Chain A, Crystal Structure Of The Human Fatty Acid Synthase
           Thioesterase Domain With An Activate Site-Specific
           Polyunsaturated Fatty Acyl Adduct
          Length = 283

 Score = 30.8 bits (68), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 138 KRINVTVDVDVRSNGNLDNQNLRSDINSGIVKLNSY------AKLHGNVSLFNV 185
           +R+   VD+ ++S+  LD Q L     S   KL +       AK HGNV L   
Sbjct: 178 ERVAAAVDLIIKSHQGLDRQELSFAARSFYYKLRAAEQYTPKAKYHGNVMLLRA 231


>pdb|2PX6|A Chain A, Crystal Structure Of The Thioesterase Domain Of Human
           Fatty Acid Synthase Inhibited By Orlistat
 pdb|2PX6|B Chain B, Crystal Structure Of The Thioesterase Domain Of Human
           Fatty Acid Synthase Inhibited By Orlistat
          Length = 316

 Score = 30.8 bits (68), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 138 KRINVTVDVDVRSNGNLDNQNLRSDINSGIVKLNSY------AKLHGNVSLFNV 185
           +R+   VD+ ++S+  LD Q L     S   KL +       AK HGNV L   
Sbjct: 200 ERVAAAVDLIIKSHQGLDRQELSFAARSFYYKLRAAEQYTPKAKYHGNVMLLRA 253


>pdb|3OS6|A Chain A, Crystal Structure Of Putative
           2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
           Dhbc From Bacillus Anthracis.
 pdb|3OS6|B Chain B, Crystal Structure Of Putative
           2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
           Dhbc From Bacillus Anthracis.
 pdb|3OS6|C Chain C, Crystal Structure Of Putative
           2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
           Dhbc From Bacillus Anthracis.
 pdb|3OS6|D Chain D, Crystal Structure Of Putative
           2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
           Dhbc From Bacillus Anthracis
          Length = 399

 Score = 30.8 bits (68), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)

Query: 115 VFYGSVTVGDVKIRDGRVEAREVKRINVTVDVDVRSNGNLDNQNLRSDI 163
           V+   V  G  KI+DG     ++K+I ++  +DV+S+G +D Q L  ++
Sbjct: 123 VYXKGVKQGIEKIKDG-----DLKKIVLSRSLDVKSSGKIDKQKLLREL 166


>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
           Galactose 4 Galactohydrolase
          Length = 271

 Score = 27.3 bits (59), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 85  SPSFNVTLVTELTIDNENYGYFEYKNCSGSVFYGSVTV 122
           S  FNV   T+     ENYG + +KN + +V  G + +
Sbjct: 20  SDEFNVKDATKWNFQTENYGVWSWKNENATVSKGKLKL 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,018,487
Number of Sequences: 62578
Number of extensions: 225427
Number of successful extensions: 285
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 8
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)