BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045946
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NJK5|RGLA_ASPNG Rhamnogalacturonate lyase A (Fragment) OS=Aspergillus niger GN=rglA
PE=3 SV=1
Length = 499
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 147 DVRSNGNLDNQNLRSDINSGIVKLNSY-AKLHGNVSLFNVLKKTKTPELDCSMNLVLARR 205
D+ SN D +L +NSG V+L SY LHG S++ ++ TP D + A
Sbjct: 209 DINSNNGGDYNSLYWYMNSGHVQLESYRMGLHGPYSMY--FSRSGTPSTDIDTSF-FADL 265
Query: 206 AVEDLVCSS 214
+E V S
Sbjct: 266 DIEGYVAES 274
>sp|A2R2L1|RGLA_ASPNC Probable rhamnogalacturonate lyase A OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=rglA PE=3 SV=2
Length = 531
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 147 DVRSNGNLDNQNLRSDINSGIVKLNSY-AKLHGNVSLFNVLKKTKTPELDCSMNLVLARR 205
D+ SN D +L +NSG V+L SY LHG S++ ++ TP D + A
Sbjct: 210 DINSNNGGDYNSLYWYMNSGHVQLESYRMGLHGPYSMY--FSRSGTPSTDIDTSF-FADL 266
Query: 206 AVEDLVCSS 214
+E V S
Sbjct: 267 DIEGYVAES 275
>sp|O27088|TOP6B_METTH Type 2 DNA topoisomerase 6 subunit B OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=top6B PE=3 SV=1
Length = 523
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 110 NCSGSVFYGSVTVGD-VKIRDGRVEAREVKRINVTVDVDVRSNGNL 154
CSG V +T G VK+ G +E E+K + +T+ +DV+ N L
Sbjct: 115 GCSGCVLLSQMTTGKPVKVISGTMENGELKGVKMTLKMDVKKNQGL 160
>sp|B8FLT9|ADEC_DESAA Adenine deaminase OS=Desulfatibacillum alkenivorans (strain AK-01)
GN=ade PE=3 SV=1
Length = 569
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 115 VFYGSVTVGDVKIRDGRVEAREVKRINVTVDVDVR--SNGNLDNQNLRSDINSGIVKLNS 172
VF G + GDV ++ G+V A + + +TVD++ R + G +D I S +V
Sbjct: 28 VFSGEIQKGDVAVQGGKVAALDSRDAKITVDLEGRFLTPGLIDAH---VHIESSMVSPYQ 84
Query: 173 YAK---LHGNVSLF 183
YA+ LHG ++
Sbjct: 85 YARTVILHGTTAVI 98
>sp|C5CHW7|ARGC_KOSOT N-acetyl-gamma-glutamyl-phosphate reductase OS=Kosmotoga olearia
(strain TBF 19.5.1) GN=argC PE=3 SV=1
Length = 339
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 151 NGNLDNQNLRSDINSGIVKLN-------SYAKLHGNVSLFNVLKKTKTPELDCSMNLVLA 203
NG+LD + + D SG+ S+++L G++ +NV K PE++ M+ +
Sbjct: 160 NGSLDEETIIVDSKSGVSGAGKKESIDYSFSELSGSLKAYNVSKHRHVPEMEQEMSKLCG 219
Query: 204 RR 205
+R
Sbjct: 220 KR 221
>sp|Q08554|DSC1_HUMAN Desmocollin-1 OS=Homo sapiens GN=DSC1 PE=1 SV=2
Length = 894
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 81 GNGTSPSFNVTLVTELTIDNENYGYFEYK--------NCSGSVFYGSVTVGDV 125
+G +P + + L+ ++ DN+N YFE++ NC G VT D+
Sbjct: 217 ADGYAPEYPLPLIIKIEDDNDNAPYFEHRVTIFTVPENCRSGTSVGKVTATDL 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,621,687
Number of Sequences: 539616
Number of extensions: 2923976
Number of successful extensions: 6154
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6152
Number of HSP's gapped (non-prelim): 23
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)