Query 045946
Match_columns 214
No_of_seqs 120 out of 636
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:10:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.9E-56 4E-61 374.4 28.8 211 1-214 1-215 (219)
2 PF03168 LEA_2: Late embryogen 99.5 1.5E-13 3.2E-18 100.4 8.6 98 95-197 1-100 (101)
3 smart00769 WHy Water Stress an 98.9 1.7E-08 3.7E-13 74.5 10.9 80 86-170 11-92 (100)
4 PF07092 DUF1356: Protein of u 98.5 3.9E-06 8.4E-11 70.8 13.7 95 48-145 85-180 (238)
5 COG5608 LEA14-like dessication 97.9 0.00096 2.1E-08 52.6 15.0 111 63-186 30-142 (161)
6 PF12751 Vac7: Vacuolar segreg 97.4 0.00067 1.5E-08 60.9 7.5 82 36-123 300-381 (387)
7 PF14155 DUF4307: Domain of un 90.3 6.2 0.00013 29.6 10.4 68 63-145 29-99 (112)
8 PLN03160 uncharacterized prote 89.5 1.2 2.7E-05 37.3 6.5 50 27-76 31-82 (219)
9 PRK12785 fliL flagellar basal 83.9 8.1 0.00017 31.0 8.1 15 106-120 86-100 (166)
10 PF14927 Neurensin: Neurensin 83.1 1.3 2.9E-05 34.6 3.1 29 39-69 47-75 (140)
11 PF06072 Herpes_US9: Alphaherp 82.3 0.31 6.8E-06 32.4 -0.6 8 18-25 4-11 (60)
12 PRK10893 lipopolysaccharide ex 80.0 32 0.00069 28.2 11.0 21 62-82 37-57 (192)
13 COG1580 FliL Flagellar basal b 79.4 10 0.00022 30.3 7.1 27 31-57 13-39 (159)
14 PF08113 CoxIIa: Cytochrome c 78.0 1.1 2.4E-05 26.2 0.8 19 43-61 9-27 (34)
15 PF11906 DUF3426: Protein of u 77.7 22 0.00048 27.4 8.5 58 68-127 48-106 (149)
16 PRK05529 cell division protein 77.2 3.5 7.5E-05 35.4 4.1 17 65-81 58-74 (255)
17 KOG0810 SNARE protein Syntaxin 76.6 1.5 3.2E-05 38.6 1.7 16 31-46 266-281 (297)
18 PF04790 Sarcoglycan_1: Sarcog 75.4 24 0.00052 30.6 8.7 17 86-102 82-98 (264)
19 PRK05696 fliL flagellar basal 73.8 5.5 0.00012 32.0 4.2 15 106-120 86-100 (170)
20 PF06024 DUF912: Nucleopolyhed 71.5 7.1 0.00015 28.7 4.0 30 35-64 61-90 (101)
21 TIGR02588 conserved hypothetic 70.5 46 0.001 25.5 11.9 50 44-102 11-61 (122)
22 PTZ00382 Variant-specific surf 70.4 3.7 8E-05 30.0 2.2 25 40-64 71-95 (96)
23 PF04415 DUF515: Protein of un 64.9 5.2 0.00011 36.8 2.5 28 36-63 31-58 (416)
24 PF11395 DUF2873: Protein of u 64.8 3.8 8.2E-05 24.7 1.1 22 40-61 11-32 (43)
25 KOG3950 Gamma/delta sarcoglyca 64.6 5.6 0.00012 34.1 2.4 20 85-104 103-123 (292)
26 COG5074 t-SNARE complex subuni 62.7 4.5 9.8E-05 34.4 1.6 22 31-52 247-268 (280)
27 PF05473 Herpes_UL45: UL45 pro 61.6 9.4 0.0002 31.6 3.3 11 3-13 3-13 (200)
28 COG4698 Uncharacterized protei 61.5 3.2 6.9E-05 33.9 0.4 48 32-82 8-58 (197)
29 PRK07021 fliL flagellar basal 61.2 28 0.00061 27.6 5.9 15 106-120 78-92 (162)
30 PF03302 VSP: Giardia variant- 59.7 6 0.00013 36.2 2.0 25 40-64 372-396 (397)
31 TIGR01478 STEVOR variant surfa 58.8 4.2 9.1E-05 35.5 0.7 27 39-65 261-287 (295)
32 PF04478 Mid2: Mid2 like cell 57.8 20 0.00044 28.5 4.3 13 96-108 90-103 (154)
33 PTZ00370 STEVOR; Provisional 57.6 4.6 9.9E-05 35.3 0.8 28 38-65 256-283 (296)
34 PRK08455 fliL flagellar basal 57.0 11 0.00025 30.7 3.0 7 60-66 41-47 (182)
35 PF14874 PapD-like: Flagellar- 56.1 69 0.0015 22.6 9.4 52 91-145 21-72 (102)
36 PRK07718 fliL flagellar basal 53.1 19 0.0004 28.0 3.5 13 108-120 64-76 (142)
37 PF05545 FixQ: Cbb3-type cytoc 52.3 9.3 0.0002 24.1 1.4 12 53-65 23-34 (49)
38 PF12505 DUF3712: Protein of u 51.0 36 0.00078 25.6 4.7 25 90-114 100-124 (125)
39 PF09865 DUF2092: Predicted pe 50.4 1.5E+02 0.0032 24.8 8.9 37 87-123 36-74 (214)
40 KOG0809 SNARE protein TLG2/Syn 50.2 16 0.00034 32.2 2.9 25 31-55 276-300 (305)
41 PF07705 CARDB: CARDB; InterP 49.7 83 0.0018 21.6 8.1 50 92-145 21-70 (101)
42 PHA02673 ORF109 EEV glycoprote 48.4 4.7 0.0001 32.2 -0.6 16 100-115 74-89 (161)
43 PF00927 Transglut_C: Transglu 47.8 1E+02 0.0022 22.1 6.8 58 88-145 13-75 (107)
44 PF07423 DUF1510: Protein of u 47.2 9.6 0.00021 32.1 1.1 9 31-39 8-16 (217)
45 PRK05886 yajC preprotein trans 47.1 8 0.00017 29.0 0.5 17 51-67 12-28 (109)
46 KOG0811 SNARE protein PEP12/VA 47.1 9.1 0.0002 33.3 1.0 6 31-36 240-245 (269)
47 COG1862 YajC Preprotein transl 46.9 9.9 0.00021 27.9 1.0 24 44-67 10-33 (97)
48 PF11797 DUF3324: Protein of u 45.6 1.4E+02 0.003 23.0 10.0 88 64-175 26-115 (140)
49 PF09624 DUF2393: Protein of u 44.9 1.4E+02 0.0031 22.9 7.7 36 89-124 61-96 (149)
50 cd01324 cbb3_Oxidase_CcoQ Cyto 43.1 18 0.00039 22.9 1.6 6 60-65 30-35 (48)
51 COG4736 CcoQ Cbb3-type cytochr 42.5 17 0.00038 24.2 1.6 12 53-65 23-34 (60)
52 PF11837 DUF3357: Domain of un 41.3 8.8 0.00019 28.5 0.0 13 31-43 23-35 (106)
53 TIGR00739 yajC preprotein tran 41.3 19 0.0004 25.6 1.7 18 49-66 9-26 (84)
54 PRK06531 yajC preprotein trans 40.8 14 0.00031 27.9 1.0 14 53-67 13-26 (113)
55 PF07787 DUF1625: Protein of u 40.0 24 0.00053 29.9 2.5 8 56-63 241-248 (248)
56 PF06919 Phage_T4_Gp30_7: Phag 38.5 67 0.0015 24.0 4.2 36 98-133 38-74 (121)
57 PF04790 Sarcoglycan_1: Sarcog 37.7 16 0.00035 31.6 1.1 13 31-43 9-21 (264)
58 PRK13159 cytochrome c-type bio 37.3 1.6E+02 0.0035 23.5 6.5 8 112-119 84-91 (155)
59 PF13974 YebO: YebO-like prote 36.1 7.5 0.00016 27.5 -1.0 16 47-62 5-20 (80)
60 PRK05585 yajC preprotein trans 35.5 20 0.00042 26.7 1.1 18 49-66 24-41 (106)
61 PF00558 Vpu: Vpu protein; In 34.6 22 0.00048 25.2 1.2 8 51-58 17-24 (81)
62 PF04573 SPC22: Signal peptida 33.4 1.3E+02 0.0027 24.4 5.5 12 60-71 31-42 (175)
63 PF06835 LptC: Lipopolysacchar 32.6 2.3E+02 0.0049 21.6 8.7 33 88-120 51-83 (176)
64 COG5353 Uncharacterized protei 32.6 48 0.001 26.3 2.8 30 33-63 3-33 (161)
65 PF10830 DUF2553: Protein of u 32.4 85 0.0018 22.0 3.8 29 102-130 8-36 (76)
66 PF15018 InaF-motif: TRP-inter 32.3 74 0.0016 19.2 3.0 30 33-62 2-32 (38)
67 PF09911 DUF2140: Uncharacteri 31.4 45 0.00097 27.2 2.7 18 48-66 14-31 (187)
68 PF12768 Rax2: Cortical protei 31.1 30 0.00065 30.2 1.7 25 36-60 231-255 (281)
69 COG3121 FimC P pilus assembly 31.0 95 0.0021 26.2 4.7 41 95-140 166-206 (235)
70 PF09307 MHC2-interact: CLIP, 30.7 17 0.00036 27.5 0.0 24 40-64 36-59 (114)
71 PF09813 Coiled-coil_56: Coile 30.3 37 0.0008 25.0 1.8 22 47-68 57-78 (100)
72 PF00430 ATP-synt_B: ATP synth 30.0 21 0.00045 26.6 0.4 18 46-63 6-23 (132)
73 PRK13150 cytochrome c-type bio 27.2 2.2E+02 0.0047 22.8 5.8 25 103-127 90-115 (159)
74 PHA02973 hypothetical protein; 25.4 2.2E+02 0.0047 21.1 5.0 50 57-118 16-66 (102)
75 PF01102 Glycophorin_A: Glycop 24.7 31 0.00068 26.4 0.6 25 48-72 77-101 (122)
76 PRK05759 F0F1 ATP synthase sub 24.7 34 0.00075 26.5 0.8 19 45-63 10-28 (156)
77 PF15102 TMEM154: TMEM154 prot 24.5 1.2E+02 0.0026 24.0 3.8 7 60-66 81-87 (146)
78 PF11322 DUF3124: Protein of u 24.5 2.6E+02 0.0057 21.5 5.6 49 89-140 22-73 (125)
79 PF09753 Use1: Membrane fusion 24.2 45 0.00096 28.3 1.5 15 38-52 228-242 (251)
80 PF15145 DUF4577: Domain of un 22.7 91 0.002 23.6 2.7 25 34-58 60-84 (128)
81 COG1589 FtsQ Cell division sep 22.7 41 0.0009 28.8 1.0 33 48-81 41-73 (269)
82 TIGR00996 Mtu_fam_mce virulenc 22.6 1E+02 0.0022 26.4 3.5 12 114-125 50-61 (291)
83 PF12166 DUF3595: Protein of u 22.5 1.6E+02 0.0034 26.8 4.9 18 31-48 57-75 (422)
84 PF10907 DUF2749: Protein of u 22.1 94 0.002 21.1 2.4 16 49-64 13-28 (66)
85 PF14055 NVEALA: NVEALA protei 21.9 47 0.001 22.2 1.0 27 53-79 15-41 (65)
86 PF02480 Herpes_gE: Alphaherpe 21.4 25 0.00055 32.7 -0.6 26 32-57 348-373 (439)
87 PF08693 SKG6: Transmembrane a 21.1 1.1E+02 0.0024 18.7 2.4 26 36-62 12-37 (40)
88 PHA02642 C-type lectin-like pr 20.7 1.4E+02 0.0031 25.0 3.8 31 31-63 46-76 (216)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.9e-56 Score=374.43 Aligned_cols=211 Identities=30% Similarity=0.564 Sum_probs=196.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCCccccc--ccCceeEEehhHHHHHHHHHHHHHhheeeeeecCCCeEEEEEEEEeeE
Q 045946 1 MAEENPKIPLAPPRNEYPRSDQEYAPAVIE--SQRKSSKCLVYVLVTIVTVSAALLISASIFLRPNTPEVQLESVTVKNL 78 (214)
Q Consensus 1 ~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~--~~r~~~~c~~~~l~~~vll~ii~lil~~~v~rPk~P~~~V~s~~l~~~ 78 (214)
|||+||+|||||+ ..+++||||++..+.+ +||+|++||+|+++++++|++++++++|++||||+|+|+|+++++++|
T Consensus 1 ~~~~~~~~p~a~~-~~~~~~d~~~~~~~~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~ 79 (219)
T PLN03160 1 MAETEQVRPLAPA-AFRLRSDEEEATNHLKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKL 79 (219)
T ss_pred CCccccCCCCCCC-cccccCchhhcCcchhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeee
Confidence 9999999999999 9999999998876654 777788899999988888888888888999999999999999999999
Q ss_pred EeCCC--CCCeEEEEEEEEEEEECCCceeEEEeceEEEEEECCEEEEeEEecCceeecccEEEEEEEEEEeeecccccCC
Q 045946 79 SHGNG--TSPSFNVTLVTELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKIRDGRVEAREVKRINVTVDVDVRSNGNLDN 156 (214)
Q Consensus 79 ~~~~~--~~~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~vp~~~~~~~~t~~~~~~~~~~~~~~~l~~~ 156 (214)
+++++ +.+.+|+||+++|+++|||+++|+|+++++.++|+|+.+|++.+|+|+|++|+|+.+++++. +.++++.++
T Consensus 80 ~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~--~~~~~~~~~ 157 (219)
T PLN03160 80 ELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVD--IIPDKILSV 157 (219)
T ss_pred eeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEE--EEeceeccc
Confidence 99753 35689999999999999999999999999999999999999999999999999999999988 888887777
Q ss_pred ccchhhhcCCeEEEEEEEEEEEEEEEEEEeeeceeEEEEeEEEEEcCCCeEEecccCC
Q 045946 157 QNLRSDINSGIVKLNSYAKLHGNVSLFNVLKKTKTPELDCSMNLVLARRAVEDLVCSS 214 (214)
Q Consensus 157 ~~l~~D~~~G~v~l~~~~~v~grv~v~~~~~~~~~~~v~C~v~v~~~~~~i~~~~C~~ 214 (214)
++|.+|+++|.++|+++++++|||++++++++|++++++|++.|+.+++++++++|+.
T Consensus 158 ~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~ 215 (219)
T PLN03160 158 PGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKR 215 (219)
T ss_pred hhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEecc
Confidence 8999999999999999999999999999999999999999999999999999999974
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.49 E-value=1.5e-13 Score=100.43 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=73.5
Q ss_pred EEEEECCCceeEEEeceEEEEEECCEEEE-eEEecCceeecccEEEEEEEEEEeeecccccCCccchhhhcCCeEEEEEE
Q 045946 95 ELTIDNENYGYFEYKNCSGSVFYGSVTVG-DVKIRDGRVEAREVKRINVTVDVDVRSNGNLDNQNLRSDINSGIVKLNSY 173 (214)
Q Consensus 95 ~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig-~~~vp~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~l~~D~~~G~v~l~~~ 173 (214)
+++++|||.++++|++.++.++|+|+.+| ....++++|++++++.+.+++. +....+ ...+.++. .|..++++.
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~--~~~~~l--~~~l~~~~-~~~~~~~v~ 75 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVS--VDYSDL--PRLLKDLL-AGRVPFDVT 75 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEE--EEHHHH--HHHHHHHH-HTTSCEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEE--EcHHHH--HHHHHhhh-ccccceEEE
Confidence 46899999999999999999999999999 7788999999999999888877 544333 13344445 667777888
Q ss_pred EEEEEEEEE-EEEeeeceeEEEEeE
Q 045946 174 AKLHGNVSL-FNVLKKTKTPELDCS 197 (214)
Q Consensus 174 ~~v~grv~v-~~~~~~~~~~~v~C~ 197 (214)
.+++|++++ +..+.+++++.++|+
T Consensus 76 ~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 76 YRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEcccceeeeEEEeEEeE
Confidence 889999995 444445566666664
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.93 E-value=1.7e-08 Score=74.49 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=66.3
Q ss_pred CeEEEEEEEEEEEECCCceeEEEeceEEEEEECCEEEEeEEec-CceeecccEEEEEEEEEEeeecccccCCccchhhhc
Q 045946 86 PSFNVTLVTELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKIR-DGRVEAREVKRINVTVDVDVRSNGNLDNQNLRSDIN 164 (214)
Q Consensus 86 ~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~vp-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~l~~D~~ 164 (214)
..++.++.+.+++.|||.+.+.|++.+..++|+|..+|++..+ ++.+++++++.+.+++. + ... ....+..++.
T Consensus 11 ~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~--~-~~~--~~~~~~~~l~ 85 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVT--V-NLF--LAEALIWHIA 85 (100)
T ss_pred cceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEE--e-ehh--HhHHHHHhhc
Confidence 3678999999999999999999999999999999999999996 79999999999998887 5 221 2256777777
Q ss_pred CCe-EEE
Q 045946 165 SGI-VKL 170 (214)
Q Consensus 165 ~G~-v~l 170 (214)
+|. ++.
T Consensus 86 ~~~~~~y 92 (100)
T smart00769 86 NGEEIPY 92 (100)
T ss_pred cCCCccE
Confidence 664 443
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.51 E-value=3.9e-06 Score=70.82 Aligned_cols=95 Identities=23% Similarity=0.264 Sum_probs=69.5
Q ss_pred HHHHHHHhheeeeeecCCCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCCceeEEEeceEEEEEECCEEEEeEEe
Q 045946 48 TVSAALLISASIFLRPNTPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKI 127 (214)
Q Consensus 48 ll~ii~lil~~~v~rPk~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~v 127 (214)
-+.+..|+++|++ ||.-.++-.++......++.. ......++.-.+.+.|||++.+.-.+.++++.|....+|.+..
T Consensus 85 CLl~~~L~iFFLf--PRsV~v~~~gv~s~~V~f~~~-~~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~ 161 (238)
T PF07092_consen 85 CLLLSGLVIFFLF--PRSVTVSPVGVKSVTVSFNPD-KSTVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKN 161 (238)
T ss_pred HHHHHHheEEEEe--CcEEEEecCcEEEEEEEEeCC-CCEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEe
Confidence 3334445545444 887666655555555555543 2356667777899999999999999999999999999999988
Q ss_pred cCc-eeecccEEEEEEEEE
Q 045946 128 RDG-RVEAREVKRINVTVD 145 (214)
Q Consensus 128 p~~-~~~~~~t~~~~~~~~ 145 (214)
... .+++++...+.+++.
T Consensus 162 ~~~~~I~Prs~~q~~~tV~ 180 (238)
T PF07092_consen 162 SNITVIGPRSSKQVNYTVK 180 (238)
T ss_pred cceEEecccCCceEEEEee
Confidence 754 788888877777665
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.93 E-value=0.00096 Score=52.64 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=79.2
Q ss_pred cCCCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCCceeEEEeceEEEEEECCEEEEeEEe-cCceeecccEEEEE
Q 045946 63 PNTPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKI-RDGRVEAREVKRIN 141 (214)
Q Consensus 63 Pk~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~v-p~~~~~~~~t~~~~ 141 (214)
-++|.+.--.+..-... .....+..++.++|||-+.+-..+.+..+|-+|.++|.+.. .++.+++++-..+.
T Consensus 30 ~~~p~ve~~ka~wGkvt-------~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvd 102 (161)
T COG5608 30 VKKPGVESMKAKWGKVT-------NSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVD 102 (161)
T ss_pred cCCCCceEEEEEEEEEe-------ccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEE
Confidence 45677766666665553 23456677789999999999999999999999999999976 46899999998888
Q ss_pred EEEEEeeecccccCCccchhhhcCCeE-EEEEEEEEEEEEEEEEEe
Q 045946 142 VTVDVDVRSNGNLDNQNLRSDINSGIV-KLNSYAKLHGNVSLFNVL 186 (214)
Q Consensus 142 ~~~~~~~~~~~l~~~~~l~~D~~~G~v-~l~~~~~v~grv~v~~~~ 186 (214)
+++. +.-.++- ....+.+++|+= +.. .++.+.+++++..
T Consensus 103 v~l~--~d~~~~k--e~w~~hi~ngErs~Ir--~~i~~~v~vg~~d 142 (161)
T COG5608 103 VPLR--LDNSKIK--EWWVTHIENGERSTIR--VRIKGVVKVGGMD 142 (161)
T ss_pred EEEE--EehHHHH--HHHHHHhhccCcccEE--EEEEEEEEEccEE
Confidence 8877 4322211 345557777764 333 4566667766543
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.36 E-value=0.00067 Score=60.90 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=51.3
Q ss_pred eEEehhHHHHHHHHHHHHHhheeeeeecCCCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCCceeEEEeceEEEE
Q 045946 36 SKCLVYVLVTIVTVSAALLISASIFLRPNTPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNENYGYFEYKNCSGSV 115 (214)
Q Consensus 36 ~~c~~~~l~~~vll~ii~lil~~~v~rPk~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v 115 (214)
.++++|+++.+++|+++..++.| +|--.+|--.|+=+.|++.-.+ .-..=|+++|.+.|||.+.+.-++.++.+
T Consensus 300 ~r~~~c~~~~i~~lL~ig~~~gF-v~AttKpL~~v~v~~I~NVlaS-----~qELmfdl~V~A~NPn~~~V~I~d~dldI 373 (387)
T PF12751_consen 300 SRFASCIYLSILLLLVIGFAIGF-VFATTKPLTDVQVVSIQNVLAS-----EQELMFDLTVEAFNPNWFTVTIDDMDLDI 373 (387)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh-hhhcCcccccceEEEeeeeeec-----cceEEEeeEEEEECCCeEEEEeccceeee
Confidence 34445555544444445555454 4445566544444445554322 23445677789999999999999999999
Q ss_pred EECCEEEE
Q 045946 116 FYGSVTVG 123 (214)
Q Consensus 116 ~Y~g~~ig 123 (214)
+=+...+|
T Consensus 374 FAKS~yvg 381 (387)
T PF12751_consen 374 FAKSRYVG 381 (387)
T ss_pred EecCCccC
Confidence 87766555
No 7
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=90.33 E-value=6.2 Score=29.58 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=33.2
Q ss_pred cCCCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCCc-eeEEEeceEEEEEECCEEEEeE--EecCceeecccEEE
Q 045946 63 PNTPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNENY-GYFEYKNCSGSVFYGSVTVGDV--KIRDGRVEAREVKR 139 (214)
Q Consensus 63 Pk~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN~-~~~~y~~~~~~v~Y~g~~ig~~--~vp~~~~~~~~t~~ 139 (214)
...|.++ .+..+|.+.+. .+...+|+ ++-. |.. ..=. + -.+.|++..+|.- .+|+ +...+..
T Consensus 29 ~~~~~v~---~~~~gf~vv~d--~~v~v~f~--Vtr~-~~~~a~C~---V-rA~~~d~aeVGrreV~vp~---~~~~~~~ 93 (112)
T PF14155_consen 29 FGSPPVS---AEVIGFEVVDD--STVEVTFD--VTRD-PGRPAVCI---V-RALDYDGAEVGRREVLVPP---SGERTVR 93 (112)
T ss_pred ccCCCce---EEEEEEEECCC--CEEEEEEE--EEEC-CCCCEEEE---E-EEEeCCCCEEEEEEEEECC---CCCcEEE
Confidence 5566664 34455666542 34555444 3333 763 2211 1 1234777788854 4566 2344455
Q ss_pred EEEEEE
Q 045946 140 INVTVD 145 (214)
Q Consensus 140 ~~~~~~ 145 (214)
+.+++.
T Consensus 94 ~~v~v~ 99 (112)
T PF14155_consen 94 VTVTVR 99 (112)
T ss_pred EEEEEE
Confidence 444444
No 8
>PLN03160 uncharacterized protein; Provisional
Probab=89.53 E-value=1.2 Score=37.29 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=29.6
Q ss_pred ccccccCceeEEehhHHHHHHHHHHHHHhheeeeeecC--CCeEEEEEEEEe
Q 045946 27 AVIESQRKSSKCLVYVLVTIVTVSAALLISASIFLRPN--TPEVQLESVTVK 76 (214)
Q Consensus 27 ~~~~~~r~~~~c~~~~l~~~vll~ii~lil~~~v~rPk--~P~~~V~s~~l~ 76 (214)
.++++..+|+.|++.+++++++++++++.+.|-.-.|+ --.++++++.+.
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~ 82 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELI 82 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeec
Confidence 34557777777766655555555555444454566666 455666666553
No 9
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=83.91 E-value=8.1 Score=30.95 Aligned_cols=15 Identities=7% Similarity=-0.066 Sum_probs=9.1
Q ss_pred EEEeceEEEEEECCE
Q 045946 106 FEYKNCSGSVFYGSV 120 (214)
Q Consensus 106 ~~y~~~~~~v~Y~g~ 120 (214)
.+|=...+.+-+++.
T Consensus 86 ~ryLkv~i~L~~~~~ 100 (166)
T PRK12785 86 VQYLKLKVVLEVKDE 100 (166)
T ss_pred ceEEEEEEEEEECCH
Confidence 366666666666654
No 10
>PF14927 Neurensin: Neurensin
Probab=83.08 E-value=1.3 Score=34.63 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=19.2
Q ss_pred ehhHHHHHHHHHHHHHhheeeeeecCCCeEE
Q 045946 39 LVYVLVTIVTVSAALLISASIFLRPNTPEVQ 69 (214)
Q Consensus 39 ~~~~l~~~vll~ii~lil~~~v~rPk~P~~~ 69 (214)
+.++.++++++|++++++.|++ |++++..
T Consensus 47 ~~i~g~l~Ll~Gi~~l~vgY~v--P~~~e~~ 75 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTVGYLV--PPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHhhccc--CCcceec
Confidence 4555566667788888888875 6555444
No 11
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=82.31 E-value=0.31 Score=32.37 Aligned_cols=8 Identities=50% Similarity=0.522 Sum_probs=4.4
Q ss_pred CCCCcCCC
Q 045946 18 PRSDQEYA 25 (214)
Q Consensus 18 ~~~d~~~~ 25 (214)
..||.|-|
T Consensus 4 SESDnETA 11 (60)
T PF06072_consen 4 SESDNETA 11 (60)
T ss_pred CccccccH
Confidence 44666555
No 12
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=79.95 E-value=32 Score=28.22 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=17.5
Q ss_pred ecCCCeEEEEEEEEeeEEeCC
Q 045946 62 RPNTPEVQLESVTVKNLSHGN 82 (214)
Q Consensus 62 rPk~P~~~V~s~~l~~~~~~~ 82 (214)
.++.|.|.+++++...|+-+.
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G 57 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG 57 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC
Confidence 467899999999999988653
No 13
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=79.40 E-value=10 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=14.2
Q ss_pred ccCceeEEehhHHHHHHHHHHHHHhhe
Q 045946 31 SQRKSSKCLVYVLVTIVTVSAALLISA 57 (214)
Q Consensus 31 ~~r~~~~c~~~~l~~~vll~ii~lil~ 57 (214)
++++.++.++.++++++++++.+...|
T Consensus 13 ~~k~~~~I~liv~ivl~~~a~~~~~~~ 39 (159)
T COG1580 13 KKKKSLWILLIVLIVLLALAGAGYFFW 39 (159)
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555544
No 14
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=77.99 E-value=1.1 Score=26.25 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhheeeee
Q 045946 43 LVTIVTVSAALLISASIFL 61 (214)
Q Consensus 43 l~~~vll~ii~lil~~~v~ 61 (214)
++++.++++.+|+.|+.+|
T Consensus 9 l~vv~iLt~~ILvFWfgvf 27 (34)
T PF08113_consen 9 LGVVMILTAFILVFWFGVF 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHH
Confidence 4555667777888776554
No 15
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=77.70 E-value=22 Score=27.38 Aligned_cols=58 Identities=10% Similarity=-0.059 Sum_probs=38.6
Q ss_pred EEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCCceeEEEeceEEEEE-ECCEEEEeEEe
Q 045946 68 VQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNENYGYFEYKNCSGSVF-YGSVTVGDVKI 127 (214)
Q Consensus 68 ~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v~-Y~g~~ig~~~v 127 (214)
..++.+++.+..+...+ .-+-.+.++.+++|.......|-.+++.++ -+|+.+.+-.+
T Consensus 48 ~~~~~l~i~~~~~~~~~--~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVP--DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeec--CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEE
Confidence 45556665554443311 122334556689999988899999999988 77888877666
No 16
>PRK05529 cell division protein FtsQ; Provisional
Probab=77.17 E-value=3.5 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.1
Q ss_pred CCeEEEEEEEEeeEEeC
Q 045946 65 TPEVQLESVTVKNLSHG 81 (214)
Q Consensus 65 ~P~~~V~s~~l~~~~~~ 81 (214)
.|-|.|.++++++-...
T Consensus 58 Sp~~~v~~I~V~Gn~~v 74 (255)
T PRK05529 58 SPLLALRSIEVAGNMRV 74 (255)
T ss_pred CCceEEEEEEEECCccC
Confidence 58999999999986643
No 17
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.59 E-value=1.5 Score=38.63 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=7.2
Q ss_pred ccCceeEEehhHHHHH
Q 045946 31 SQRKSSKCLVYVLVTI 46 (214)
Q Consensus 31 ~~r~~~~c~~~~l~~~ 46 (214)
+-||++|||+++++++
T Consensus 266 kaRK~k~i~ii~~iii 281 (297)
T KOG0810|consen 266 KARKWKIIIIIILIII 281 (297)
T ss_pred HhhhceeeeehHHHHH
Confidence 4445555444443333
No 18
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=75.41 E-value=24 Score=30.58 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=10.2
Q ss_pred CeEEEEEEEEEEEECCC
Q 045946 86 PSFNVTLVTELTIDNEN 102 (214)
Q Consensus 86 ~~ln~tl~~~v~~~NPN 102 (214)
..+..+=.+.++++|.|
T Consensus 82 l~i~s~~~v~~~~r~~~ 98 (264)
T PF04790_consen 82 LVIQSSRNVTLNARNEN 98 (264)
T ss_pred EEEEecCceEEEEecCC
Confidence 33444334667788888
No 19
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=73.80 E-value=5.5 Score=31.96 Aligned_cols=15 Identities=0% Similarity=-0.186 Sum_probs=7.7
Q ss_pred EEEeceEEEEEECCE
Q 045946 106 FEYKNCSGSVFYGSV 120 (214)
Q Consensus 106 ~~y~~~~~~v~Y~g~ 120 (214)
-+|=...+.+.+++.
T Consensus 86 ~ryLkv~i~l~~~d~ 100 (170)
T PRK05696 86 DRLVQIKVQLMVRGS 100 (170)
T ss_pred ceEEEEEEEEEECCH
Confidence 345555555555543
No 20
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=71.46 E-value=7.1 Score=28.68 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=16.7
Q ss_pred eeEEehhHHHHHHHHHHHHHhheeeeeecC
Q 045946 35 SSKCLVYVLVTIVTVSAALLISASIFLRPN 64 (214)
Q Consensus 35 ~~~c~~~~l~~~vll~ii~lil~~~v~rPk 64 (214)
...+++.++++++++.++.+|.+|.++|=|
T Consensus 61 ~~iili~lls~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYYFVILRER 90 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheEEEEEecc
Confidence 344555555555555555556666666644
No 21
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=70.48 E-value=46 Score=25.47 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhe-eeeeecCCCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCC
Q 045946 44 VTIVTVSAALLISA-SIFLRPNTPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNEN 102 (214)
Q Consensus 44 ~~~vll~ii~lil~-~~v~rPk~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN 102 (214)
+++++++++.+++| |+.-++++|.+.+......+.. ...+- +-++++|--
T Consensus 11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~~-----~gqyy----VpF~V~N~g 61 (122)
T TIGR02588 11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERMQ-----TGQYY----VPFAIHNLG 61 (122)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEEe-----CCEEE----EEEEEEeCC
Confidence 34444444444433 4577788999988876665532 11233 344678866
No 22
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=70.41 E-value=3.7 Score=30.01 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHhheeeeeecC
Q 045946 40 VYVLVTIVTVSAALLISASIFLRPN 64 (214)
Q Consensus 40 ~~~l~~~vll~ii~lil~~~v~rPk 64 (214)
+.+.+++++.+++.++.||+++|=|
T Consensus 71 i~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 71 ISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred EEeehhhHHHHHHHHHhheeEEeec
Confidence 3444444444555566677777743
No 23
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=64.90 E-value=5.2 Score=36.82 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=12.6
Q ss_pred eEEehhHHHHHHHHHHHHHhheeeeeec
Q 045946 36 SKCLVYVLVTIVTVSAALLISASIFLRP 63 (214)
Q Consensus 36 ~~c~~~~l~~~vll~ii~lil~~~v~rP 63 (214)
+..++.+++.++++++++.+.+|+.++|
T Consensus 31 riiiGa~Vl~iIii~~~~~~Y~~~~~~~ 58 (416)
T PF04415_consen 31 RIIIGAAVLIIIIIFIVYNIYYFLQNQP 58 (416)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHhhhhH
Confidence 3344343334444444444444555554
No 24
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=64.77 E-value=3.8 Score=24.68 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHhheeeee
Q 045946 40 VYVLVTIVTVSAALLISASIFL 61 (214)
Q Consensus 40 ~~~l~~~vll~ii~lil~~~v~ 61 (214)
.|++++++.+.++.+|++|+++
T Consensus 11 lc~l~~llflv~imliif~f~l 32 (43)
T PF11395_consen 11 LCFLSFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444443
No 25
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=64.59 E-value=5.6 Score=34.09 Aligned_cols=20 Identities=10% Similarity=-0.049 Sum_probs=15.6
Q ss_pred CCeEEEEEEEEEEEECCC-ce
Q 045946 85 SPSFNVTLVTELTIDNEN-YG 104 (214)
Q Consensus 85 ~~~ln~tl~~~v~~~NPN-~~ 104 (214)
+..+..+=++++.++||| .+
T Consensus 103 ~l~~~S~rnvtvnarn~~g~v 123 (292)
T KOG3950|consen 103 PLYLQSARNVTVNARNPNGKV 123 (292)
T ss_pred ceEEEeccCeeEEccCCCCce
Confidence 456667778889999999 64
No 26
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=62.66 E-value=4.5 Score=34.43 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=9.2
Q ss_pred ccCceeEEehhHHHHHHHHHHH
Q 045946 31 SQRKSSKCLVYVLVTIVTVSAA 52 (214)
Q Consensus 31 ~~r~~~~c~~~~l~~~vll~ii 52 (214)
|.+|+.|+.+|++++++++.++
T Consensus 247 Rkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 247 RKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred HhcceehhhhHHHHHHHHHHHH
Confidence 4445544444444444333333
No 27
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=61.58 E-value=9.4 Score=31.62 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=6.8
Q ss_pred CCCCCCCCCCC
Q 045946 3 EENPKIPLAPP 13 (214)
Q Consensus 3 ~~~~~~p~~~~ 13 (214)
-+||.+||.|.
T Consensus 3 ~~~~~~~~~~~ 13 (200)
T PF05473_consen 3 TPDQQAPLKPT 13 (200)
T ss_pred CccccCccccc
Confidence 45666666655
No 28
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.47 E-value=3.2 Score=33.90 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=29.7
Q ss_pred cCceeEEehhHHHHHHHHHHHHHhheeeeeecCCCeEEEEEEEE---eeEEeCC
Q 045946 32 QRKSSKCLVYVLVTIVTVSAALLISASIFLRPNTPEVQLESVTV---KNLSHGN 82 (214)
Q Consensus 32 ~r~~~~c~~~~l~~~vll~ii~lil~~~v~rPk~P~~~V~s~~l---~~~~~~~ 82 (214)
.+.|++.|+|++++.++++ +++.. .++.|+.|...+.+.+= ..|.+++
T Consensus 8 ~n~WKw~f~iLLAln~l~~--~~i~~-~vlsp~ee~t~~~~a~~~~~~~fqitt 58 (197)
T COG4698 8 LNYWKWLFFILLALNTLLA--VLIAL-FVLSPREEPTHLEDASEKSEKSFQITT 58 (197)
T ss_pred ccHHHHHHHHHHHHHHHHH--HHhhe-eeccCCCCCchhhccCcccceeEEEEc
Confidence 3346677777666666555 33333 58899998777766554 3455554
No 29
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=61.23 E-value=28 Score=27.57 Aligned_cols=15 Identities=0% Similarity=-0.343 Sum_probs=8.7
Q ss_pred EEEeceEEEEEECCE
Q 045946 106 FEYKNCSGSVFYGSV 120 (214)
Q Consensus 106 ~~y~~~~~~v~Y~g~ 120 (214)
-+|=..++.+-+.+.
T Consensus 78 ~rylkv~i~L~~~~~ 92 (162)
T PRK07021 78 DRVLYVGLTLRLPDE 92 (162)
T ss_pred ceEEEEEEEEEECCH
Confidence 455556666666554
No 30
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=59.72 E-value=6 Score=36.16 Aligned_cols=25 Identities=16% Similarity=0.099 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHhheeeeeecC
Q 045946 40 VYVLVTIVTVSAALLISASIFLRPN 64 (214)
Q Consensus 40 ~~~l~~~vll~ii~lil~~~v~rPk 64 (214)
|.+++++|+-++|.++.||++.|=|
T Consensus 372 IsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 372 ISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred eeehhHHHHHHHHHHHhhheeeccc
Confidence 4444455555677777899898854
No 31
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=58.78 E-value=4.2 Score=35.52 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=16.4
Q ss_pred ehhHHHHHHHHHHHHHhheeeeeecCC
Q 045946 39 LVYVLVTIVTVSAALLISASIFLRPNT 65 (214)
Q Consensus 39 ~~~~l~~~vll~ii~lil~~~v~rPk~ 65 (214)
|++.++++++|+++++||+.+++|-|+
T Consensus 261 cgiaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556666666666666666544666543
No 32
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=57.76 E-value=20 Score=28.49 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=8.9
Q ss_pred EEEECCCcee-EEE
Q 045946 96 LTIDNENYGY-FEY 108 (214)
Q Consensus 96 v~~~NPN~~~-~~y 108 (214)
++++++|++. .+|
T Consensus 90 vtay~~n~~~~~w~ 103 (154)
T PF04478_consen 90 VTAYRSNKLTKWWY 103 (154)
T ss_pred EEEEcCchHHHHHH
Confidence 5799999653 444
No 33
>PTZ00370 STEVOR; Provisional
Probab=57.55 E-value=4.6 Score=35.34 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=16.7
Q ss_pred EehhHHHHHHHHHHHHHhheeeeeecCC
Q 045946 38 CLVYVLVTIVTVSAALLISASIFLRPNT 65 (214)
Q Consensus 38 c~~~~l~~~vll~ii~lil~~~v~rPk~ 65 (214)
-|++.++++++|+++++||+.+++|-|+
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566666666666666666544565543
No 34
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=56.97 E-value=11 Score=30.67 Aligned_cols=7 Identities=0% Similarity=0.211 Sum_probs=2.7
Q ss_pred eeecCCC
Q 045946 60 FLRPNTP 66 (214)
Q Consensus 60 v~rPk~P 66 (214)
++....+
T Consensus 41 ~~~~~~~ 47 (182)
T PRK08455 41 LMGSKEE 47 (182)
T ss_pred HhcCCCc
Confidence 4434333
No 35
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=56.12 E-value=69 Score=22.61 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=26.7
Q ss_pred EEEEEEEEECCCceeEEEeceEEEEEECCEEEEeEEecCceeecccEEEEEEEEE
Q 045946 91 TLVTELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKIRDGRVEAREVKRINVTVD 145 (214)
Q Consensus 91 tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~vp~~~~~~~~t~~~~~~~~ 145 (214)
+....++++|-.....+|.=..-. ..+..+ ...-+.+...++.+..+++++.
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~--~~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPE--SLSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCC--cCCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 334556788988544444211000 011112 2233466777888887777754
No 36
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=53.08 E-value=19 Score=28.04 Aligned_cols=13 Identities=8% Similarity=-0.120 Sum_probs=6.6
Q ss_pred EeceEEEEEECCE
Q 045946 108 YKNCSGSVFYGSV 120 (214)
Q Consensus 108 y~~~~~~v~Y~g~ 120 (214)
|=..++.+-+++.
T Consensus 64 ylk~~i~l~~~~~ 76 (142)
T PRK07718 64 FIRIQFKIETDSK 76 (142)
T ss_pred EEEEEEEEEECCH
Confidence 4445555555543
No 37
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=52.29 E-value=9.3 Score=24.06 Aligned_cols=12 Identities=25% Similarity=0.226 Sum_probs=7.1
Q ss_pred HHhheeeeeecCC
Q 045946 53 LLISASIFLRPNT 65 (214)
Q Consensus 53 ~lil~~~v~rPk~ 65 (214)
+.+++| +|+|+.
T Consensus 23 ~gi~~w-~~~~~~ 34 (49)
T PF05545_consen 23 IGIVIW-AYRPRN 34 (49)
T ss_pred HHHHHH-HHcccc
Confidence 333444 888884
No 38
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=50.97 E-value=36 Score=25.57 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=18.2
Q ss_pred EEEEEEEEEECCCceeEEEeceEEE
Q 045946 90 VTLVTELTIDNENYGYFEYKNCSGS 114 (214)
Q Consensus 90 ~tl~~~v~~~NPN~~~~~y~~~~~~ 114 (214)
..+..++.+.||..+++..++.++.
T Consensus 100 ~~~~~~~~l~NPS~~ti~lG~v~~~ 124 (125)
T PF12505_consen 100 INLNATVTLPNPSPLTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEEcCCCeEEEEeccEEEe
Confidence 3346667889999888877777654
No 39
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=50.42 E-value=1.5e+02 Score=24.78 Aligned_cols=37 Identities=8% Similarity=0.168 Sum_probs=29.6
Q ss_pred eEEEEEEEEEEEECCCceeEEE--eceEEEEEECCEEEE
Q 045946 87 SFNVTLVTELTIDNENYGYFEY--KNCSGSVFYGSVTVG 123 (214)
Q Consensus 87 ~ln~tl~~~v~~~NPN~~~~~y--~~~~~~v~Y~g~~ig 123 (214)
.+..+-+.+|.++=|||+.+.+ +..+..++|+|..+.
T Consensus 36 klq~~~~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 36 KLQFSSSGTVTVQRPDKLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred eEEEEEEEEEEEeCCCeEEEEEEcCCcceEEEECCCEEE
Confidence 4555557778999999887777 778889999998765
No 40
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.23 E-value=16 Score=32.15 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=13.7
Q ss_pred ccCceeEEehhHHHHHHHHHHHHHh
Q 045946 31 SQRKSSKCLVYVLVTIVTVSAALLI 55 (214)
Q Consensus 31 ~~r~~~~c~~~~l~~~vll~ii~li 55 (214)
.++.-++||+|.|++++++.++++|
T Consensus 276 Qk~~~k~~~i~~L~l~ii~llvlli 300 (305)
T KOG0809|consen 276 QKRNKKMKVILMLTLLIIALLVLLI 300 (305)
T ss_pred HhcCCceEehHHHHHHHHHHHHHHH
Confidence 3343456667766666555454444
No 41
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=49.70 E-value=83 Score=21.61 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=29.4
Q ss_pred EEEEEEEECCCceeEEEeceEEEEEECCEEEEeEEecCceeecccEEEEEEEEE
Q 045946 92 LVTELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKIRDGRVEAREVKRINVTVD 145 (214)
Q Consensus 92 l~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~vp~~~~~~~~t~~~~~~~~ 145 (214)
+.++++++|.-... -++..+.++.+|..++...++.. ++..+..+..++.
T Consensus 21 ~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i~~L--~~g~~~~v~~~~~ 70 (101)
T PF07705_consen 21 VTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTIPSL--APGESETVTFTWT 70 (101)
T ss_dssp EEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEESEB---TTEEEEEEEEEE
T ss_pred EEEEEEEEECCCCC--CCCEEEEEEECCceeccEEECCc--CCCcEEEEEEEEE
Confidence 34455788875332 34566778888988887777443 3555555555544
No 42
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=48.35 E-value=4.7 Score=32.18 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=7.7
Q ss_pred CCCceeEEEeceEEEE
Q 045946 100 NENYGYFEYKNCSGSV 115 (214)
Q Consensus 100 NPN~~~~~y~~~~~~v 115 (214)
|-.=-||.|++.-..+
T Consensus 74 ~~tC~GI~~~~~Cltl 89 (161)
T PHA02673 74 NRTCDGINAGNKCLTL 89 (161)
T ss_pred cCcCCCcccCCeeEEe
Confidence 3333456665554433
No 43
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=47.83 E-value=1e+02 Score=22.12 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=33.7
Q ss_pred EEEEEEEEEEEECCCce---eEEEeceEEEEEECCEEEE--eEEecCceeecccEEEEEEEEE
Q 045946 88 FNVTLVTELTIDNENYG---YFEYKNCSGSVFYGSVTVG--DVKIRDGRVEAREVKRINVTVD 145 (214)
Q Consensus 88 ln~tl~~~v~~~NPN~~---~~~y~~~~~~v~Y~g~~ig--~~~vp~~~~~~~~t~~~~~~~~ 145 (214)
++-.+.+.+++.||... .+...=....++|.|.... .-.......+++++..+...+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 33445666789999832 2444345566689997542 3334556777788777766654
No 44
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=47.25 E-value=9.6 Score=32.07 Aligned_cols=9 Identities=44% Similarity=0.667 Sum_probs=4.2
Q ss_pred ccCceeEEe
Q 045946 31 SQRKSSKCL 39 (214)
Q Consensus 31 ~~r~~~~c~ 39 (214)
++||-.+.+
T Consensus 8 KrRK~N~iL 16 (217)
T PF07423_consen 8 KRRKTNKIL 16 (217)
T ss_pred HhhhhhhhH
Confidence 445544444
No 45
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=47.08 E-value=8 Score=29.01 Aligned_cols=17 Identities=6% Similarity=-0.255 Sum_probs=10.8
Q ss_pred HHHHhheeeeeecCCCe
Q 045946 51 AALLISASIFLRPNTPE 67 (214)
Q Consensus 51 ii~lil~~~v~rPk~P~ 67 (214)
++++++||+++||+.=+
T Consensus 12 ~i~~i~yF~~iRPQkKr 28 (109)
T PRK05886 12 LIMGGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHHHHccHHHHH
Confidence 34445567789998544
No 46
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.05 E-value=9.1 Score=33.26 Aligned_cols=6 Identities=33% Similarity=0.446 Sum_probs=2.8
Q ss_pred ccCcee
Q 045946 31 SQRKSS 36 (214)
Q Consensus 31 ~~r~~~ 36 (214)
+.+++.
T Consensus 240 ~~~k~~ 245 (269)
T KOG0811|consen 240 KARKKK 245 (269)
T ss_pred HhcCch
Confidence 444444
No 47
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=46.87 E-value=9.9 Score=27.90 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhheeeeeecCCCe
Q 045946 44 VTIVTVSAALLISASIFLRPNTPE 67 (214)
Q Consensus 44 ~~~vll~ii~lil~~~v~rPk~P~ 67 (214)
..++.+.+++++.||+++||..=+
T Consensus 10 ~~ll~~vl~~~ifyFli~RPQrKr 33 (97)
T COG1862 10 VLLLPLVLIFAIFYFLIIRPQRKR 33 (97)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHH
Confidence 344444555666778899997543
No 48
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=45.61 E-value=1.4e+02 Score=22.96 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=55.0
Q ss_pred CCCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCCceeEEEeceEEEEEECC--EEEEeEEecCceeecccEEEEE
Q 045946 64 NTPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNENYGYFEYKNCSGSVFYGS--VTVGDVKIRDGRVEAREVKRIN 141 (214)
Q Consensus 64 k~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g--~~ig~~~vp~~~~~~~~t~~~~ 141 (214)
-.|.+.+.++.....+. .-.+.+.++||...-+.=-.+++.++..| ..+......++...|.+...+
T Consensus 26 ~~p~L~l~~v~~~~~n~----------~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~- 94 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQING----------RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNF- 94 (140)
T ss_pred cCcccEEeeeeeeEECC----------eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEe-
Confidence 36777777766665542 22455678999955444455677888887 467777777888877766554
Q ss_pred EEEEEeeecccccCCccchhhhcCCeEEEEEEEE
Q 045946 142 VTVDVDVRSNGNLDNQNLRSDINSGIVKLNSYAK 175 (214)
Q Consensus 142 ~~~~~~~~~~~l~~~~~l~~D~~~G~v~l~~~~~ 175 (214)
.+. +.+. .+..|...|.+.+.
T Consensus 95 -~i~--~~~~----------~lk~G~Y~l~~~~~ 115 (140)
T PF11797_consen 95 -PIP--LGGK----------KLKPGKYTLKITAK 115 (140)
T ss_pred -Eec--CCCc----------CccCCEEEEEEEEE
Confidence 322 2122 35677777765443
No 49
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=44.93 E-value=1.4e+02 Score=22.90 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=27.8
Q ss_pred EEEEEEEEEEECCCceeEEEeceEEEEEECCEEEEe
Q 045946 89 NVTLVTELTIDNENYGYFEYKNCSGSVFYGSVTVGD 124 (214)
Q Consensus 89 n~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~ 124 (214)
+-++.+..+++|-.+..+..=..++.+..++...++
T Consensus 61 ~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 61 SESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGN 96 (149)
T ss_pred ccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCc
Confidence 445566678999999999998899998887654444
No 50
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=43.09 E-value=18 Score=22.94 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=4.8
Q ss_pred eeecCC
Q 045946 60 FLRPNT 65 (214)
Q Consensus 60 v~rPk~ 65 (214)
+|+|+.
T Consensus 30 a~~p~~ 35 (48)
T cd01324 30 AFRPGR 35 (48)
T ss_pred HhCCCc
Confidence 889984
No 51
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=17 Score=24.24 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=7.5
Q ss_pred HHhheeeeeecCC
Q 045946 53 LLISASIFLRPNT 65 (214)
Q Consensus 53 ~lil~~~v~rPk~ 65 (214)
+.++| .+|||+.
T Consensus 23 iavi~-~ayr~~~ 34 (60)
T COG4736 23 IAVIY-FAYRPGK 34 (60)
T ss_pred HHHHH-HHhcccc
Confidence 33444 4999974
No 52
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=41.35 E-value=8.8 Score=28.47 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=0.0
Q ss_pred ccCceeEEehhHH
Q 045946 31 SQRKSSKCLVYVL 43 (214)
Q Consensus 31 ~~r~~~~c~~~~l 43 (214)
++||-.+|+.+++
T Consensus 23 ~~rR~~k~~~~i~ 35 (106)
T PF11837_consen 23 RRRRPLKCLAAIF 35 (106)
T ss_dssp -------------
T ss_pred CcCCcchhHHHHH
Confidence 3444334443333
No 53
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=41.25 E-value=19 Score=25.61 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=11.3
Q ss_pred HHHHHHhheeeeeecCCC
Q 045946 49 VSAALLISASIFLRPNTP 66 (214)
Q Consensus 49 l~ii~lil~~~v~rPk~P 66 (214)
++++++++||+.+||..=
T Consensus 9 ~vv~~~i~yf~~~rpqkK 26 (84)
T TIGR00739 9 LVLIFLIFYFLIIRPQRK 26 (84)
T ss_pred HHHHHHHHHHheechHHH
Confidence 344455567778888743
No 54
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=40.77 E-value=14 Score=27.85 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=8.4
Q ss_pred HHhheeeeeecCCCe
Q 045946 53 LLISASIFLRPNTPE 67 (214)
Q Consensus 53 ~lil~~~v~rPk~P~ 67 (214)
++++| +++||+.=+
T Consensus 13 ~~i~y-f~iRPQkKr 26 (113)
T PRK06531 13 LGLIF-FMQRQQKKQ 26 (113)
T ss_pred HHHHH-heechHHHH
Confidence 33344 479998654
No 55
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=40.00 E-value=24 Score=29.89 Aligned_cols=8 Identities=50% Similarity=0.795 Sum_probs=5.3
Q ss_pred heeeeeec
Q 045946 56 SASIFLRP 63 (214)
Q Consensus 56 l~~~v~rP 63 (214)
++|+.+||
T Consensus 241 ~aW~~yRP 248 (248)
T PF07787_consen 241 LAWLFYRP 248 (248)
T ss_pred HhheeeCc
Confidence 44568887
No 56
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=38.48 E-value=67 Score=23.97 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=26.0
Q ss_pred EECCCceeEEE-eceEEEEEECCEEEEeEEecCceee
Q 045946 98 IDNENYGYFEY-KNCSGSVFYGSVTVGDVKIRDGRVE 133 (214)
Q Consensus 98 ~~NPN~~~~~y-~~~~~~v~Y~g~~ig~~~vp~~~~~ 133 (214)
.-|||++-|+| ...++++.|.|..+.-+.-..+++.
T Consensus 38 Y~~pNYvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~R 74 (121)
T PF06919_consen 38 YMTPNYVFMRFENGITVSVTYNGSIFKIGLDDDHRER 74 (121)
T ss_pred ecCCCEEEEEecCCCEEEEEecCcEEEEEecCchhhc
Confidence 34999988888 7789999999976555444444443
No 57
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=37.74 E-value=16 Score=31.62 Aligned_cols=13 Identities=15% Similarity=0.237 Sum_probs=5.7
Q ss_pred ccCceeEEehhHH
Q 045946 31 SQRKSSKCLVYVL 43 (214)
Q Consensus 31 ~~r~~~~c~~~~l 43 (214)
+|++|.+|+.+++
T Consensus 9 wrk~cly~~vllL 21 (264)
T PF04790_consen 9 WRKRCLYLFVLLL 21 (264)
T ss_pred hhhhhHHHHHHHH
Confidence 4444444443333
No 58
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=37.31 E-value=1.6e+02 Score=23.48 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=3.9
Q ss_pred EEEEEECC
Q 045946 112 SGSVFYGS 119 (214)
Q Consensus 112 ~~~v~Y~g 119 (214)
++.+.|.|
T Consensus 84 ~v~V~Y~G 91 (155)
T PRK13159 84 ATQVEYTG 91 (155)
T ss_pred EEEEEEcc
Confidence 44445554
No 59
>PF13974 YebO: YebO-like protein
Probab=36.07 E-value=7.5 Score=27.52 Aligned_cols=16 Identities=31% Similarity=0.029 Sum_probs=9.5
Q ss_pred HHHHHHHHhheeeeee
Q 045946 47 VTVSAALLISASIFLR 62 (214)
Q Consensus 47 vll~ii~lil~~~v~r 62 (214)
+++.++.+++||++-|
T Consensus 5 ~~~~lv~livWFFVnR 20 (80)
T PF13974_consen 5 VLVLLVGLIVWFFVNR 20 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556677776654
No 60
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=35.53 E-value=20 Score=26.69 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=11.0
Q ss_pred HHHHHHhheeeeeecCCC
Q 045946 49 VSAALLISASIFLRPNTP 66 (214)
Q Consensus 49 l~ii~lil~~~v~rPk~P 66 (214)
++++++++||+.+||..=
T Consensus 24 lvii~~i~yf~~~RpqkK 41 (106)
T PRK05585 24 LVVFFAIFYFLIIRPQQK 41 (106)
T ss_pred HHHHHHHHHHHhccHHHH
Confidence 334455556678888643
No 61
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=34.60 E-value=22 Score=25.19 Aligned_cols=8 Identities=0% Similarity=0.003 Sum_probs=3.3
Q ss_pred HHHHhhee
Q 045946 51 AALLISAS 58 (214)
Q Consensus 51 ii~lil~~ 58 (214)
++++++|.
T Consensus 17 iiaIvvW~ 24 (81)
T PF00558_consen 17 IIAIVVWT 24 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 62
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=33.36 E-value=1.3e+02 Score=24.43 Aligned_cols=12 Identities=25% Similarity=0.841 Sum_probs=7.0
Q ss_pred eeecCCCeEEEE
Q 045946 60 FLRPNTPEVQLE 71 (214)
Q Consensus 60 v~rPk~P~~~V~ 71 (214)
++.+..|..++.
T Consensus 31 ~~~~~~~~~~i~ 42 (175)
T PF04573_consen 31 YFHPPSPSVSIS 42 (175)
T ss_pred hccCCCCceEEE
Confidence 466666665553
No 63
>PF06835 LptC: Lipopolysaccharide-assembly, LptC-related; InterPro: IPR010664 This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [].; PDB: 3MY2_A.
Probab=32.58 E-value=2.3e+02 Score=21.65 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=12.7
Q ss_pred EEEEEEEEEEEECCCceeEEEeceEEEEEECCE
Q 045946 88 FNVTLVTELTIDNENYGYFEYKNCSGSVFYGSV 120 (214)
Q Consensus 88 ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~ 120 (214)
+...++..=--+++|.-.++.+...+.++-.+.
T Consensus 51 ~~~~l~A~~~~~~~~~~~~~l~~p~~~~~~~~~ 83 (176)
T PF06835_consen 51 LQWKLTAERAEHYPNSDTVELEDPSLIIYDDDG 83 (176)
T ss_dssp --EEEE-SSEEEETTTTEEEEES-EEEEE-TT-
T ss_pred EEEEEEEeEEEEecCCCcEEEeccEEEEEeCCC
Confidence 344443332344555323444566666555443
No 64
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.56 E-value=48 Score=26.32 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=12.3
Q ss_pred CceeEEehhHH-HHHHHHHHHHHhheeeeeec
Q 045946 33 RKSSKCLVYVL-VTIVTVSAALLISASIFLRP 63 (214)
Q Consensus 33 r~~~~c~~~~l-~~~vll~ii~lil~~~v~rP 63 (214)
+|..+.++.++ +++++++.+++..| ...+|
T Consensus 3 kk~~~~i~ii~viflai~~s~~~~~~-~s~~P 33 (161)
T COG5353 3 KKHLIIIIIILVIFLAIILSIALFFW-KSMKP 33 (161)
T ss_pred ceEeeeehhHHHHHHHHHHHHHHHHh-HhcCc
Confidence 34544444333 33333344444433 34444
No 65
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=32.44 E-value=85 Score=21.97 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=24.0
Q ss_pred CceeEEEeceEEEEEECCEEEEeEEecCc
Q 045946 102 NYGYFEYKNCSGSVFYGSVTVGDVKIRDG 130 (214)
Q Consensus 102 N~~~~~y~~~~~~v~Y~g~~ig~~~vp~~ 130 (214)
|++.=+|.+....||+.+..||...++..
T Consensus 8 d~V~gkf~ng~l~LY~~~e~IG~~~~~~~ 36 (76)
T PF10830_consen 8 DKVTGKFKNGGLELYHDNEMIGEIYMTEE 36 (76)
T ss_pred cceEEEecCCcEEEEeccceeeeEccCCC
Confidence 56777788899999999999999777654
No 66
>PF15018 InaF-motif: TRP-interacting helix
Probab=32.27 E-value=74 Score=19.25 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=13.5
Q ss_pred CceeEEehhHH-HHHHHHHHHHHhheeeeee
Q 045946 33 RKSSKCLVYVL-VTIVTVSAALLISASIFLR 62 (214)
Q Consensus 33 r~~~~c~~~~l-~~~vll~ii~lil~~~v~r 62 (214)
+|+.+++-+++ ++-+-++.+.|.++|+.++
T Consensus 2 ~k~~R~~tV~~Yl~~VSl~Ai~LsiYY~f~W 32 (38)
T PF15018_consen 2 KKWVRVLTVVAYLFSVSLAAIVLSIYYIFFW 32 (38)
T ss_pred ceEEeeHHHHHHHHHHHHHHHHHHHHHheee
Confidence 35555553333 3333334445555554444
No 67
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=31.43 E-value=45 Score=27.25 Aligned_cols=18 Identities=11% Similarity=0.425 Sum_probs=10.8
Q ss_pred HHHHHHHhheeeeeecCCC
Q 045946 48 TVSAALLISASIFLRPNTP 66 (214)
Q Consensus 48 ll~ii~lil~~~v~rPk~P 66 (214)
++++++++ ++.+++|+.|
T Consensus 14 ~l~~~~~~-~~~~~~~~~~ 31 (187)
T PF09911_consen 14 NLAFVIVV-FFRLFQPSEP 31 (187)
T ss_pred HHHHHhhe-eeEEEccCCC
Confidence 33343444 4469999977
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=31.09 E-value=30 Score=30.21 Aligned_cols=25 Identities=24% Similarity=0.068 Sum_probs=15.5
Q ss_pred eEEehhHHHHHHHHHHHHHhheeee
Q 045946 36 SKCLVYVLVTIVTVSAALLISASIF 60 (214)
Q Consensus 36 ~~c~~~~l~~~vll~ii~lil~~~v 60 (214)
++-++|.+.++++|+++.+|+.++.
T Consensus 231 lIslAiALG~v~ll~l~Gii~~~~~ 255 (281)
T PF12768_consen 231 LISLAIALGTVFLLVLIGIILAYIR 255 (281)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667777777766533
No 69
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.97 E-value=95 Score=26.21 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=27.2
Q ss_pred EEEEECCCceeEEEeceEEEEEECCEEEEeEEecCceeecccEEEE
Q 045946 95 ELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKIRDGRVEAREVKRI 140 (214)
Q Consensus 95 ~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~vp~~~~~~~~t~~~ 140 (214)
.++++||-.+.+.+.+.++.. +|..++ +...++.++++..+
T Consensus 166 ~l~v~Nptpy~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~~ 206 (235)
T COG3121 166 LLTVKNPTPYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQF 206 (235)
T ss_pred EEEEECCCCcEEEEEEEEEee--CceecC---CCcceECCCcccee
Confidence 478999997777777666665 777765 34455555555443
No 70
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=30.66 E-value=17 Score=27.54 Aligned_cols=24 Identities=0% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhheeeeeecC
Q 045946 40 VYVLVTIVTVSAALLISASIFLRPN 64 (214)
Q Consensus 40 ~~~l~~~vll~ii~lil~~~v~rPk 64 (214)
++.+++.++|+.-++..| ++|.=+
T Consensus 36 gltvLa~LLiAGQa~TaY-fv~~Qk 59 (114)
T PF09307_consen 36 GLTVLACLLIAGQAVTAY-FVFQQK 59 (114)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHhHHHHHH-HHHHhH
Confidence 333333334444454444 466543
No 71
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=30.31 E-value=37 Score=25.01 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=12.3
Q ss_pred HHHHHHHHhheeeeeecCCCeE
Q 045946 47 VTVSAALLISASIFLRPNTPEV 68 (214)
Q Consensus 47 vll~ii~lil~~~v~rPk~P~~ 68 (214)
.|.++++.|.+|+++..+.=+|
T Consensus 57 ~L~~~v~gIY~YTi~sV~Qe~F 78 (100)
T PF09813_consen 57 ALGAFVVGIYAYTIYSVKQEDF 78 (100)
T ss_pred HHHHHHHHHHhheeeeechhhh
Confidence 3444556666677766554443
No 72
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=29.96 E-value=21 Score=26.64 Aligned_cols=18 Identities=6% Similarity=0.375 Sum_probs=9.2
Q ss_pred HHHHHHHHHhheeeeeec
Q 045946 46 IVTVSAALLISASIFLRP 63 (214)
Q Consensus 46 ~vll~ii~lil~~~v~rP 63 (214)
++.++++++++++++++|
T Consensus 6 ~i~Flil~~~l~~~~~~p 23 (132)
T PF00430_consen 6 LINFLILFFLLNKFLYKP 23 (132)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444455556556655
No 73
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=27.21 E-value=2.2e+02 Score=22.80 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=10.5
Q ss_pred ceeEEEeceEEEEEECCE-EEEeEEe
Q 045946 103 YGYFEYKNCSGSVFYGSV-TVGDVKI 127 (214)
Q Consensus 103 ~~~~~y~~~~~~v~Y~g~-~ig~~~v 127 (214)
.+.+.|...-=+++-.|+ .|.++.+
T Consensus 90 ~v~V~Y~GilPDlFrEG~gVVveG~~ 115 (159)
T PRK13150 90 SVTVSYEGILPDLFREGQGVVVQGTL 115 (159)
T ss_pred EEEEEEeccCCccccCCCeEEEEEEE
Confidence 344444444333333332 2445444
No 74
>PHA02973 hypothetical protein; Provisional
Probab=25.40 E-value=2.2e+02 Score=21.07 Aligned_cols=50 Identities=6% Similarity=0.036 Sum_probs=26.7
Q ss_pred eeeeeecC-CCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCCceeEEEeceEEEEEEC
Q 045946 57 ASIFLRPN-TPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNENYGYFEYKNCSGSVFYG 118 (214)
Q Consensus 57 ~~~v~rPk-~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~ 118 (214)
+++-|.|. +-+..|....-.+ +.+. +..++. +-..||++. -.+.+.++|+
T Consensus 16 Y~fn~~pTNKmq~aV~~l~~e~--~~d~-p~~l~t-----~lF~~~~~~----~~~~v~~yyd 66 (102)
T PHA02973 16 YFFNFKRTNKMDIGINPIKKIP--WSDN-DHIFVS-----SLFHNKDKY----LTGPMKLNYD 66 (102)
T ss_pred HHhhccccchhhhhhhhccccc--ccCC-CceeEE-----EEecCCCCc----cccceEEEEc
Confidence 44455665 6777777766665 2222 223333 458899931 2344444554
No 75
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.69 E-value=31 Score=26.36 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=6.7
Q ss_pred HHHHHHHhheeeeeecCCCeEEEEE
Q 045946 48 TVSAALLISASIFLRPNTPEVQLES 72 (214)
Q Consensus 48 ll~ii~lil~~~v~rPk~P~~~V~s 72 (214)
++++|+||+|++--+=|++...++.
T Consensus 77 vIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC
Confidence 3444455544322234465555555
No 76
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=24.69 E-value=34 Score=26.49 Aligned_cols=19 Identities=5% Similarity=0.165 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhheeeeeec
Q 045946 45 TIVTVSAALLISASIFLRP 63 (214)
Q Consensus 45 ~~vll~ii~lil~~~v~rP 63 (214)
.++.++++++++++++|+|
T Consensus 10 ~~i~Flil~~il~~~~~~p 28 (156)
T PRK05759 10 QLIAFLILVWFIMKFVWPP 28 (156)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3334444455556656666
No 77
>PF15102 TMEM154: TMEM154 protein family
Probab=24.49 E-value=1.2e+02 Score=23.98 Aligned_cols=7 Identities=0% Similarity=0.363 Sum_probs=3.5
Q ss_pred eeecCCC
Q 045946 60 FLRPNTP 66 (214)
Q Consensus 60 v~rPk~P 66 (214)
.+|=|+.
T Consensus 81 ~~kRkr~ 87 (146)
T PF15102_consen 81 YYKRKRT 87 (146)
T ss_pred EEeeccc
Confidence 5555544
No 78
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=24.45 E-value=2.6e+02 Score=21.46 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=26.9
Q ss_pred EEEEEEEEEEECCC-ceeEEEeceEEEEEEC--CEEEEeEEecCceeecccEEEE
Q 045946 89 NVTLVTELTIDNEN-YGYFEYKNCSGSVFYG--SVTVGDVKIRDGRVEAREVKRI 140 (214)
Q Consensus 89 n~tl~~~v~~~NPN-~~~~~y~~~~~~v~Y~--g~~ig~~~vp~~~~~~~~t~~~ 140 (214)
...|++++++||.+ .-.+.-.+.+ ||+ |..|-.---.|.+.++-.+..+
T Consensus 22 ~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~ 73 (125)
T PF11322_consen 22 PFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEF 73 (125)
T ss_pred eEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEE
Confidence 33445667899998 5444432221 344 3444433334667777777665
No 79
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=24.24 E-value=45 Score=28.33 Aligned_cols=15 Identities=13% Similarity=0.563 Sum_probs=6.4
Q ss_pred EehhHHHHHHHHHHH
Q 045946 38 CLVYVLVTIVTVSAA 52 (214)
Q Consensus 38 c~~~~l~~~vll~ii 52 (214)
|+.|++++++++.++
T Consensus 228 ~~~~~~i~~v~~~Fi 242 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFI 242 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544444333333
No 80
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=22.71 E-value=91 Score=23.57 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=13.2
Q ss_pred ceeEEehhHHHHHHHHHHHHHhhee
Q 045946 34 KSSKCLVYVLVTIVTVSAALLISAS 58 (214)
Q Consensus 34 ~~~~c~~~~l~~~vll~ii~lil~~ 58 (214)
++..+.+.++++++-++++.+++++
T Consensus 60 ~~lffvglii~LivSLaLVsFvIFL 84 (128)
T PF15145_consen 60 RSLFFVGLIIVLIVSLALVSFVIFL 84 (128)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555566666553
No 81
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=22.68 E-value=41 Score=28.84 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=22.8
Q ss_pred HHHHHHHhheeeeeecCCCeEEEEEEEEeeEEeC
Q 045946 48 TVSAALLISASIFLRPNTPEVQLESVTVKNLSHG 81 (214)
Q Consensus 48 ll~ii~lil~~~v~rPk~P~~~V~s~~l~~~~~~ 81 (214)
++++.++++| ....++.|.+.+..+.+++-...
T Consensus 41 ~~~~~~~~~~-~~~~~~~~~~~i~~v~v~Gn~~~ 73 (269)
T COG1589 41 LLLLVLVVLW-VLILLSLPYFPIRKVSVSGNNQV 73 (269)
T ss_pred HHHHHHHHHh-eehhhhcCCccceEEEEecCccc
Confidence 3334444445 47778999999999999975443
No 82
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=22.61 E-value=1e+02 Score=26.37 Aligned_cols=12 Identities=42% Similarity=0.445 Sum_probs=7.0
Q ss_pred EEEECCEEEEeE
Q 045946 114 SVFYGSVTVGDV 125 (214)
Q Consensus 114 ~v~Y~g~~ig~~ 125 (214)
.+.|+|.+||.+
T Consensus 50 ~V~~~Gv~VG~V 61 (291)
T TIGR00996 50 KVRVRGVPVGKV 61 (291)
T ss_pred ceEEcceEEEEE
Confidence 345666666654
No 83
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=22.53 E-value=1.6e+02 Score=26.85 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=8.3
Q ss_pred ccCceeEEe-hhHHHHHHH
Q 045946 31 SQRKSSKCL-VYVLVTIVT 48 (214)
Q Consensus 31 ~~r~~~~c~-~~~l~~~vl 48 (214)
++.+..+|+ |++++++++
T Consensus 57 ~~~~~~K~~~G~~~~~~li 75 (422)
T PF12166_consen 57 KKPKMVKYLMGGLLLLLLI 75 (422)
T ss_pred cCcceEEeeehHHHHHHHH
Confidence 444444444 555544433
No 84
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=22.07 E-value=94 Score=21.11 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=9.8
Q ss_pred HHHHHHhheeeeeecC
Q 045946 49 VSAALLISASIFLRPN 64 (214)
Q Consensus 49 l~ii~lil~~~v~rPk 64 (214)
+++.+.+.+|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3444444566788888
No 85
>PF14055 NVEALA: NVEALA protein
Probab=21.88 E-value=47 Score=22.17 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=16.8
Q ss_pred HHhheeeeeecCCCeEEEEEEEEeeEE
Q 045946 53 LLISASIFLRPNTPEVQLESVTVKNLS 79 (214)
Q Consensus 53 ~lil~~~v~rPk~P~~~V~s~~l~~~~ 79 (214)
+++..|-+++.+.-+..+.++.+.|..
T Consensus 15 ~~~ag~~~~~~~~~~~~lsdL~L~NVE 41 (65)
T PF14055_consen 15 AAVAGYNVYQSQNKEVNLSDLALANVE 41 (65)
T ss_pred hhheeeeEEEeccCccccchHHHHhHH
Confidence 444456677777666666676666543
No 86
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.39 E-value=25 Score=32.68 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=0.0
Q ss_pred cCceeEEehhHHHHHHHHHHHHHhhe
Q 045946 32 QRKSSKCLVYVLVTIVTVSAALLISA 57 (214)
Q Consensus 32 ~r~~~~c~~~~l~~~vll~ii~lil~ 57 (214)
.++....++.+++++++++++++++|
T Consensus 348 ~~~~~~~l~vVlgvavlivVv~viv~ 373 (439)
T PF02480_consen 348 TSRGAALLGVVLGVAVLIVVVGVIVW 373 (439)
T ss_dssp --------------------------
T ss_pred CCcccchHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444433
No 87
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.07 E-value=1.1e+02 Score=18.66 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=10.5
Q ss_pred eEEehhHHHHHHHHHHHHHhheeeeee
Q 045946 36 SKCLVYVLVTIVTVSAALLISASIFLR 62 (214)
Q Consensus 36 ~~c~~~~l~~~vll~ii~lil~~~v~r 62 (214)
-+-|++..=+.+++++++++|+ +++|
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~-~~~r 37 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLF-FWYR 37 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhh-eEEe
Confidence 3445444433333333333333 2444
No 88
>PHA02642 C-type lectin-like protein; Provisional
Probab=20.66 E-value=1.4e+02 Score=25.02 Aligned_cols=31 Identities=13% Similarity=0.386 Sum_probs=12.2
Q ss_pred ccCceeEEehhHHHHHHHHHHHHHhheeeeeec
Q 045946 31 SQRKSSKCLVYVLVTIVTVSAALLISASIFLRP 63 (214)
Q Consensus 31 ~~r~~~~c~~~~l~~~vll~ii~lil~~~v~rP 63 (214)
..-|+-||.+ ++.+++...++.|++. +++|.
T Consensus 46 ~~~~~~~c~~-~i~~l~~~~~~~l~~~-~~~~~ 76 (216)
T PHA02642 46 TPEKLYCCII-TICILITINLVPIIIL-MAFKS 76 (216)
T ss_pred Cccceeeeee-hHHHHHHHHHHHHHHH-HHhcc
Confidence 3334434433 3333333334444433 24444
Done!