Query 045946
Match_columns 214
No_of_seqs 120 out of 636
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.6 1.8E-07 6.3E-12 74.7 8.0 99 64-174 43-143 (174)
2 1xo8_A AT1G01470; structural g 98.3 3.7E-07 1.3E-11 71.3 3.9 99 63-173 19-119 (151)
3 3but_A Uncharacterized protein 98.2 4.3E-05 1.5E-09 58.5 12.7 91 88-184 16-108 (136)
4 3s8f_C Cytochrome C oxidase po 62.7 2.4 8.3E-05 24.2 0.8 20 42-61 8-27 (34)
5 2rdd_B UPF0092 membrane protei 46.4 3.3 0.00011 23.9 -0.5 14 51-64 11-24 (37)
6 3p5s_A CD38 molecule; cyclic A 43.2 5 0.00017 33.7 0.0 16 33-48 7-22 (278)
7 2l0d_A Cell surface protein; s 42.3 92 0.0031 22.3 7.9 56 65-131 2-58 (114)
8 3j1r_A Archaeal adhesion filam 39.1 11 0.00039 19.9 1.0 9 45-53 9-17 (26)
9 2l6w_A Beta-type platelet-deri 43.9 6.9 0.00024 22.9 0.0 11 59-69 29-39 (39)
10 3me0_B PAPG protein; immunoglo 25.2 56 0.0019 24.1 3.1 78 61-140 9-101 (128)
11 2kj1_A BM2 protein; cytoplasmi 24.5 18 0.00061 24.1 0.3 13 92-104 10-22 (89)
12 2knc_B Integrin beta-3; transm 23.0 50 0.0017 22.1 2.3 13 45-57 20-32 (79)
13 3arc_T Photosystem II reaction 22.9 26 0.0009 19.5 0.7 6 63-68 24-29 (32)
14 3idu_A Uncharacterized protein 20.4 2.5E+02 0.0084 20.2 8.5 69 63-144 14-82 (127)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.55 E-value=1.8e-07 Score=74.71 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCCceeEEEeceEEEEEECCEEEEeEEecC-ceeecccEEEEEE
Q 045946 64 NTPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKIRD-GRVEAREVKRINV 142 (214)
Q Consensus 64 k~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~vp~-~~~~~~~t~~~~~ 142 (214)
++|++++.++++.+++.. .++|.+.++++|||.+.+.+...+..+.-+|..++++..+. +.+++++++.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~-------~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~V 115 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDV 115 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-------SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc-------eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEE
Confidence 789999999999988643 36677788999999999999999999999999999999985 7999999999998
Q ss_pred EEEEeeecccccCCccchhhhc-CCeEEEEEEE
Q 045946 143 TVDVDVRSNGNLDNQNLRSDIN-SGIVKLNSYA 174 (214)
Q Consensus 143 ~~~~~~~~~~l~~~~~l~~D~~-~G~v~l~~~~ 174 (214)
++. +.-..+ ..+.+|+. .+.++-++++
T Consensus 116 pv~--v~~~~l---~~~~~~l~~~~~i~Y~L~g 143 (174)
T 1yyc_A 116 PVK--VAYSIA---VSLMKDMCTDWDIDYQLDI 143 (174)
T ss_dssp EEE--ESHHHH---HHTCCCCCSSEEECEEEEE
T ss_pred EEE--EEHHHH---HHHHHhcCCCCccceEEEE
Confidence 888 432222 23344553 3456654433
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.31 E-value=3.7e-07 Score=71.33 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=76.4
Q ss_pred cCCCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCCceeEEEeceEEEEEECCEEEEeEEec-CceeecccEEEEE
Q 045946 63 PNTPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKIR-DGRVEAREVKRIN 141 (214)
Q Consensus 63 Pk~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~vp-~~~~~~~~t~~~~ 141 (214)
-++|++++.++++.+++. ..+++.+.++++|||.+.+.+...+..+.-+|..++++..+ ++.+++++++.+.
T Consensus 19 ~~~P~v~v~~v~~~~~~~-------~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~ 91 (151)
T 1xo8_A 19 IPKPEGSVTDVDLKDVNR-------DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALD 91 (151)
T ss_dssp CCSCCCBCSEEEECCCTT-------TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEE
T ss_pred CCCCEEEEEEeEEeccCc-------ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEE
Confidence 368999999998887753 35677888899999999999999999999999999999987 5899999999988
Q ss_pred EEEEEeeecccccCCccchhhhc-CCeEEEEEE
Q 045946 142 VTVDVDVRSNGNLDNQNLRSDIN-SGIVKLNSY 173 (214)
Q Consensus 142 ~~~~~~~~~~~l~~~~~l~~D~~-~G~v~l~~~ 173 (214)
+++. +.-..+ ..+.+|+. .+.++-+++
T Consensus 92 vpv~--v~~~~l---~~~~~~l~~~~~i~Y~l~ 119 (151)
T 1xo8_A 92 IPVV--VPYSIL---FNLARDVGVDWDIDYELQ 119 (151)
T ss_dssp ECCC--EEHHHH---HHHHHHHHHHSEEEEEEE
T ss_pred EEEE--EEHHHH---HHHHHhcccCCcccEEEE
Confidence 8877 432211 34445543 457776543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.16 E-value=4.3e-05 Score=58.54 Aligned_cols=91 Identities=11% Similarity=0.071 Sum_probs=66.1
Q ss_pred EEEEEEEEEEEECCCceeEEEeceEEEEEECCEEEEeEEe-cCceeecccEEEEEEEEEEeeecccccCCccchhhhcCC
Q 045946 88 FNVTLVTELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKI-RDGRVEAREVKRINVTVDVDVRSNGNLDNQNLRSDINSG 166 (214)
Q Consensus 88 ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~v-p~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~l~~D~~~G 166 (214)
-.+.|.+.+++.|||.+.+.++..+..+++.|..+|++.. ..+.++++++..+.+++. +.-.++. ..+.+.+.+|
T Consensus 16 ~~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~--i~~~~l~--~~~~~hi~ng 91 (136)
T 3but_A 16 SQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLR--LNNSFLR--EWWVTHIANG 91 (136)
T ss_dssp SEEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEE--EEHHHHT--THHHHHHHTT
T ss_pred cEEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEE--EchHHhH--HHHHHHhhcC
Confidence 4566788899999999999999999999999999999984 578999999888888877 4433332 3466666666
Q ss_pred eE-EEEEEEEEEEEEEEEE
Q 045946 167 IV-KLNSYAKLHGNVSLFN 184 (214)
Q Consensus 167 ~v-~l~~~~~v~grv~v~~ 184 (214)
+- .++ +++..++.+++
T Consensus 92 e~s~l~--i~~~~~l~v~g 108 (136)
T 3but_A 92 EKTKIR--VAIKPTIEIGG 108 (136)
T ss_dssp SEEEEE--EEEEEEEECC-
T ss_pred CceEEE--EEEEEEEEeCC
Confidence 32 232 34444555543
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=62.69 E-value=2.4 Score=24.20 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhheeeee
Q 045946 42 VLVTIVTVSAALLISASIFL 61 (214)
Q Consensus 42 ~l~~~vll~ii~lil~~~v~ 61 (214)
+++.++++++.+++.|+.+|
T Consensus 8 Tl~~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 8 ALAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHH
Confidence 34555666777777665443
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=46.43 E-value=3.3 Score=23.91 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=8.8
Q ss_pred HHHHhheeeeeecC
Q 045946 51 AALLISASIFLRPN 64 (214)
Q Consensus 51 ii~lil~~~v~rPk 64 (214)
+++++.||+++||.
T Consensus 11 ~~~~ifYFl~iRPQ 24 (37)
T 2rdd_B 11 VFGLIFYFMILRPQ 24 (37)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhhhH
Confidence 33445566788885
No 6
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=43.19 E-value=5 Score=33.75 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=0.0
Q ss_pred CceeEEehhHHHHHHH
Q 045946 33 RKSSKCLVYVLVTIVT 48 (214)
Q Consensus 33 r~~~~c~~~~l~~~vl 48 (214)
||..+|++++++++++
T Consensus 7 ~~~~~~l~~~~~~l~~ 22 (278)
T 3p5s_A 7 PRKKLCWCVLLFFLVA 22 (278)
T ss_dssp ----------------
T ss_pred CceEEeehHHHHHHHH
Confidence 3444555444444433
No 7
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=42.28 E-value=92 Score=22.26 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=34.4
Q ss_pred CCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCC-ceeEEEeceEEEEEECCEEEEeEEecCce
Q 045946 65 TPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNEN-YGYFEYKNCSGSVFYGSVTVGDVKIRDGR 131 (214)
Q Consensus 65 ~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN-~~~~~y~~~~~~v~Y~g~~ig~~~vp~~~ 131 (214)
.|++.+.+++-... .-+-...++++++|.- ... ....+.++-+|..++...+++..
T Consensus 2 ~PDL~vt~itP~~~--------~~~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~La 58 (114)
T 2l0d_A 2 IPDLVPVSLTPVTV--------VPNTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTSLE 58 (114)
T ss_dssp CCCEEEEEEECSEE--------CTTSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESCBC
T ss_pred CCCcEEEeccCCCc--------CCCCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEcceeccccc
Confidence 37777777632221 1122234556789987 322 44667788899999988877643
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=39.12 E-value=11 Score=19.88 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 045946 45 TIVTVSAAL 53 (214)
Q Consensus 45 ~~vll~ii~ 53 (214)
+++++++++
T Consensus 9 lLIviav~a 17 (26)
T 3j1r_A 9 LLILIAVAA 17 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444433
No 9
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=43.90 E-value=6.9 Score=22.92 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=7.4
Q ss_pred eeeecCCCeEE
Q 045946 59 IFLRPNTPEVQ 69 (214)
Q Consensus 59 ~v~rPk~P~~~ 69 (214)
++.+-++|+|.
T Consensus 29 i~~w~qKPrYe 39 (39)
T 2l6w_A 29 IMLWQKKPRYE 39 (39)
Confidence 45667888874
No 10
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=25.24 E-value=56 Score=24.09 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=39.6
Q ss_pred eecCCCeEEEEEEEEeeEEeCCCC-----CCeEEEEEEEEEEE-EC--C-----Cc--eeEEEeceEEEEEECCEEEEeE
Q 045946 61 LRPNTPEVQLESVTVKNLSHGNGT-----SPSFNVTLVTELTI-DN--E-----NY--GYFEYKNCSGSVFYGSVTVGDV 125 (214)
Q Consensus 61 ~rPk~P~~~V~s~~l~~~~~~~~~-----~~~ln~tl~~~v~~-~N--P-----N~--~~~~y~~~~~~v~Y~g~~ig~~ 125 (214)
.||..|.++++.=.+..=++.... ..+.+...++.|.+ .| | .+ +.+. +..+..++-+|+..++.
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~-ngl~S~l~lNG~~~~e~ 87 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLG-HGWDSIVSVNGVDTGET 87 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEE-TTEEEEEEETTBCSSEE
T ss_pred cCCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEecCCcccccccCceEEecC-CCeEEEEEECCeeccce
Confidence 589999998876544432222110 01111112222333 32 1 22 3333 47788888899988887
Q ss_pred EecCceeecccEEEE
Q 045946 126 KIRDGRVEAREVKRI 140 (214)
Q Consensus 126 ~vp~~~~~~~~t~~~ 140 (214)
.+ .++.++.++.++
T Consensus 88 ~~-~~~~~~s~tvtV 101 (128)
T 3me0_B 88 TM-RWYKAGTQNLTI 101 (128)
T ss_dssp EE-EESSSEEEEEEE
T ss_pred eE-EEEecCCcEEEE
Confidence 77 343333334333
No 11
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=24.53 E-value=18 Score=24.11 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=3.9
Q ss_pred EEEEEEEECCCce
Q 045946 92 LVTELTIDNENYG 104 (214)
Q Consensus 92 l~~~v~~~NPN~~ 104 (214)
+++.++++|||+-
T Consensus 10 v~lki~ir~pnke 22 (89)
T 2kj1_A 10 VNMKIRIKGPNKE 22 (89)
T ss_dssp --------CCCHH
T ss_pred CceEEEecCCCHH
Confidence 4566789999963
No 12
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.04 E-value=50 Score=22.15 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhe
Q 045946 45 TIVTVSAALLISA 57 (214)
Q Consensus 45 ~~vll~ii~lil~ 57 (214)
.++++|++++++|
T Consensus 20 gilliGllllliw 32 (79)
T 2knc_B 20 AILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445566555555
No 13
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=22.91 E-value=26 Score=19.53 Aligned_cols=6 Identities=17% Similarity=0.623 Sum_probs=3.4
Q ss_pred cCCCeE
Q 045946 63 PNTPEV 68 (214)
Q Consensus 63 Pk~P~~ 68 (214)
..+|++
T Consensus 24 RePPri 29 (32)
T 3arc_T 24 REPPRI 29 (32)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 556654
No 14
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=20.42 E-value=2.5e+02 Score=20.24 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=39.2
Q ss_pred cCCCeEEEEEEEEeeEEeCCCCCCeEEEEEEEEEEEECCCceeEEEeceEEEEEECCEEEEeEEecCceeecccEEEEEE
Q 045946 63 PNTPEVQLESVTVKNLSHGNGTSPSFNVTLVTELTIDNENYGYFEYKNCSGSVFYGSVTVGDVKIRDGRVEAREVKRINV 142 (214)
Q Consensus 63 Pk~P~~~V~s~~l~~~~~~~~~~~~ln~tl~~~v~~~NPN~~~~~y~~~~~~v~Y~g~~ig~~~vp~~~~~~~~t~~~~~ 142 (214)
-..|.+.+ +++-.. .+.. +-+..++++++|=-... -++..+.++-+|..++...+ ...+..++.+.+
T Consensus 14 ~~~pDL~V-~is~P~-~v~~------G~~~ti~vtV~N~G~~~--a~~~~V~lyvng~~v~t~~v---~La~G~s~tv~f 80 (127)
T 3idu_A 14 FEFPDLTV-EIKGPD-VVGV------NKLAEYEVHVKNLGGIG--VPSTKVRVYINGTLYKNWTV---SLGPKEEKVLTF 80 (127)
T ss_dssp CSSCCEEE-EEESCS-EECT------TCCEEEEEEEEECSSSC--EEEEEEEEEETTEEEEEEEE---EECTTCEEEEEE
T ss_pred ccCCCeEE-EecCCC-cccC------CCEEEEEEEEEECCCCc--cCCcEEEEEECCEEEeeEEe---ccCCCCeEEEEE
Confidence 44678877 443221 1111 22223445678766322 24567888899999887665 255666665544
Q ss_pred EE
Q 045946 143 TV 144 (214)
Q Consensus 143 ~~ 144 (214)
..
T Consensus 81 ~~ 82 (127)
T 3idu_A 81 NW 82 (127)
T ss_dssp EE
T ss_pred EE
Confidence 43
Done!