Query 045947
Match_columns 101
No_of_seqs 157 out of 1093
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 2.5E-46 5.5E-51 236.8 8.2 101 1-101 1-101 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.4E-45 3E-50 237.4 9.9 100 2-101 6-106 (153)
3 PLN00172 ubiquitin conjugating 100.0 2.2E-42 4.7E-47 222.8 11.5 101 1-101 1-101 (147)
4 PTZ00390 ubiquitin-conjugating 100.0 8.2E-42 1.8E-46 221.1 11.4 100 2-101 3-102 (152)
5 KOG0419 Ubiquitin-protein liga 100.0 2.4E-42 5.3E-47 214.2 7.6 99 2-100 5-103 (152)
6 KOG0418 Ubiquitin-protein liga 100.0 3.3E-38 7.1E-43 205.8 7.8 100 2-101 4-107 (200)
7 KOG0421 Ubiquitin-protein liga 100.0 2.6E-38 5.7E-43 198.9 5.6 98 3-100 31-128 (175)
8 PF00179 UQ_con: Ubiquitin-con 100.0 1.2E-37 2.5E-42 199.1 8.0 96 5-100 1-98 (140)
9 cd00195 UBCc Ubiquitin-conjuga 100.0 1.2E-36 2.5E-41 194.8 10.2 98 4-101 2-100 (141)
10 KOG0425 Ubiquitin-protein liga 100.0 1E-36 2.2E-41 193.9 9.3 100 2-101 6-119 (171)
11 KOG0424 Ubiquitin-protein liga 100.0 4.7E-36 1E-40 188.5 8.3 101 1-101 4-111 (158)
12 KOG0426 Ubiquitin-protein liga 100.0 3.9E-36 8.5E-41 186.8 7.2 100 1-100 4-117 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 4.8E-35 1E-39 188.1 10.0 97 4-100 1-99 (145)
14 KOG0427 Ubiquitin conjugating 100.0 1.6E-34 3.4E-39 179.4 9.1 100 1-101 15-115 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 1.7E-32 3.6E-37 171.7 7.1 100 1-101 2-103 (153)
16 KOG0894 Ubiquitin-protein liga 100.0 1.3E-30 2.8E-35 173.5 8.8 98 2-101 6-106 (244)
17 KOG0416 Ubiquitin-protein liga 100.0 5.6E-31 1.2E-35 169.6 5.6 95 2-99 4-99 (189)
18 KOG0420 Ubiquitin-protein liga 100.0 3.1E-30 6.7E-35 166.4 5.7 97 2-101 29-129 (184)
19 KOG0423 Ubiquitin-protein liga 100.0 9.2E-30 2E-34 164.7 4.4 98 3-100 12-109 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 2.1E-24 4.4E-29 146.6 7.6 97 2-101 12-111 (314)
21 KOG0895 Ubiquitin-conjugating 99.7 1.4E-18 2.9E-23 136.0 5.3 97 4-100 854-959 (1101)
22 KOG0895 Ubiquitin-conjugating 99.7 4.4E-16 9.5E-21 122.2 9.0 94 3-96 284-387 (1101)
23 KOG0429 Ubiquitin-conjugating 99.6 1.5E-15 3.2E-20 102.1 8.0 91 4-95 22-115 (258)
24 KOG0896 Ubiquitin-conjugating 99.5 2.2E-13 4.7E-18 85.3 6.5 97 4-100 8-111 (138)
25 PF08694 UFC1: Ubiquitin-fold 98.5 5E-08 1.1E-12 62.0 2.5 81 3-89 26-117 (161)
26 PF14461 Prok-E2_B: Prokaryoti 98.5 1.5E-07 3.3E-12 59.7 4.5 54 46-99 34-93 (133)
27 KOG0897 Predicted ubiquitin-co 98.5 4.7E-08 1E-12 59.9 1.1 51 50-100 13-65 (122)
28 PF05743 UEV: UEV domain; Int 98.3 2.2E-06 4.8E-11 53.6 5.0 61 30-95 32-99 (121)
29 KOG3357 Uncharacterized conser 98.0 1E-05 2.2E-10 51.0 3.9 79 3-87 29-118 (167)
30 PF05773 RWD: RWD domain; Int 97.3 0.0011 2.4E-08 39.9 5.9 69 4-73 4-74 (113)
31 KOG2391 Vacuolar sorting prote 97.2 0.0021 4.6E-08 46.5 7.0 64 29-97 51-121 (365)
32 smart00591 RWD domain in RING 96.9 0.0084 1.8E-07 35.7 7.2 27 46-72 39-65 (107)
33 PF14462 Prok-E2_E: Prokaryoti 95.5 0.074 1.6E-06 33.4 5.9 53 19-72 12-66 (122)
34 PF14457 Prok-E2_A: Prokaryoti 92.8 0.64 1.4E-05 30.5 6.2 49 51-99 56-113 (162)
35 KOG0309 Conserved WD40 repeat- 91.1 1.6 3.4E-05 35.4 7.5 67 5-72 424-491 (1081)
36 KOG4018 Uncharacterized conser 89.2 1.3 2.9E-05 30.3 5.1 60 7-69 8-70 (215)
37 PF09765 WD-3: WD-repeat regio 87.3 2.1 4.5E-05 30.7 5.4 57 4-69 102-158 (291)
38 cd00421 intradiol_dioxygenase 80.3 3.4 7.3E-05 26.4 3.7 26 46-71 64-90 (146)
39 cd03457 intradiol_dioxygenase_ 79.3 3.7 7.9E-05 27.6 3.8 26 46-71 85-110 (188)
40 smart00340 HALZ homeobox assoc 77.3 2.3 5E-05 21.7 1.8 14 3-16 21-34 (44)
41 cd03459 3,4-PCD Protocatechuat 74.8 6 0.00013 25.8 3.7 26 46-71 71-101 (158)
42 PF14460 Prok-E2_D: Prokaryoti 73.1 1.7 3.7E-05 28.7 0.9 14 76-89 98-111 (175)
43 TIGR03737 PRTRC_B PRTRC system 70.2 2.5 5.3E-05 29.4 1.1 17 73-89 133-152 (228)
44 PF06113 BRE: Brain and reprod 69.2 10 0.00022 27.8 4.2 41 31-77 54-95 (333)
45 PF06113 BRE: Brain and reprod 66.6 20 0.00044 26.3 5.2 25 48-72 306-330 (333)
46 TIGR02423 protocat_alph protoc 66.0 11 0.00024 25.4 3.6 25 46-70 95-124 (193)
47 cd03463 3,4-PCD_alpha Protocat 63.5 13 0.00029 24.9 3.6 24 47-70 92-120 (185)
48 PF03366 YEATS: YEATS family; 63.0 28 0.0006 20.2 4.8 42 31-74 2-43 (84)
49 KOG4445 Uncharacterized conser 60.5 13 0.00029 27.0 3.4 25 48-72 45-69 (368)
50 KOG3285 Spindle assembly check 59.4 18 0.00039 24.4 3.6 41 3-43 121-161 (203)
51 cd05845 Ig2_L1-CAM_like Second 56.1 39 0.00086 20.0 4.5 26 45-72 16-41 (95)
52 PRK15486 hpaC 4-hydroxyphenyla 54.6 59 0.0013 21.4 6.6 66 6-90 6-76 (170)
53 PF11745 DUF3304: Protein of u 50.7 10 0.00022 23.4 1.3 21 80-100 49-69 (118)
54 TIGR02439 catechol_proteo cate 49.8 29 0.00063 25.0 3.6 25 46-70 179-221 (285)
55 cd03464 3,4-PCD_beta Protocate 49.3 31 0.00067 23.8 3.6 24 47-70 122-152 (220)
56 KOG1047 Bifunctional leukotrie 48.3 21 0.00045 28.2 2.9 29 43-72 248-279 (613)
57 cd03461 1,2-HQD Hydroxyquinol 46.7 34 0.00075 24.5 3.6 25 46-70 171-213 (277)
58 PF12065 DUF3545: Protein of u 46.6 17 0.00036 19.9 1.6 13 3-15 36-48 (59)
59 TIGR02422 protocat_beta protoc 46.3 37 0.00079 23.5 3.6 25 46-70 116-147 (220)
60 cd03460 1,2-CTD Catechol 1,2 d 43.6 41 0.0009 24.1 3.6 25 46-70 175-217 (282)
61 PF05709 Sipho_tail: Phage tai 43.2 98 0.0021 20.6 5.4 58 4-63 55-115 (249)
62 TIGR02296 HpaC 4-hydroxyphenyl 42.4 14 0.0003 23.8 1.0 30 62-91 36-68 (154)
63 PRK11700 hypothetical protein; 42.4 1.1E+02 0.0023 20.8 5.3 61 29-89 87-174 (187)
64 TIGR02438 catachol_actin catec 41.8 47 0.001 23.9 3.7 25 46-70 183-225 (281)
65 PF00779 BTK: BTK motif; Inte 41.8 9.1 0.0002 18.2 0.1 15 73-87 2-17 (32)
66 TIGR02465 chlorocat_1_2 chloro 39.3 56 0.0012 23.0 3.7 25 46-70 149-191 (246)
67 COG2819 Predicted hydrolase of 38.9 61 0.0013 23.1 3.9 30 42-71 15-46 (264)
68 KOG0177 20S proteasome, regula 37.9 6.3 0.00014 26.7 -1.1 20 81-100 135-154 (200)
69 PF04881 Adeno_GP19K: Adenovir 37.9 38 0.00082 21.6 2.4 30 27-56 44-74 (139)
70 COG0544 Tig FKBP-type peptidyl 37.5 1E+02 0.0022 23.6 5.1 13 50-62 211-223 (441)
71 TIGR01633 phi3626_gp14_N putat 37.1 93 0.002 18.5 6.2 56 3-59 64-121 (124)
72 PF00845 Gemini_BL1: Geminivir 36.2 1.1E+02 0.0023 21.8 4.6 46 29-75 101-155 (276)
73 PF14135 DUF4302: Domain of un 35.8 1.5E+02 0.0031 20.4 5.5 68 2-83 10-104 (235)
74 TIGR03615 RutF pyrimidine util 35.5 21 0.00046 22.9 1.1 66 8-90 4-72 (156)
75 cd03458 Catechol_intradiol_dio 34.1 74 0.0016 22.5 3.7 25 46-70 155-197 (256)
76 KOG3696 Aspartyl beta-hydroxyl 34.0 1.1E+02 0.0024 22.5 4.6 40 45-84 284-329 (334)
77 COG1853 Conserved protein/doma 33.7 32 0.00069 22.4 1.7 29 63-91 45-76 (176)
78 COG4957 Predicted transcriptio 31.8 24 0.00053 22.7 0.9 17 50-66 104-120 (148)
79 COG3866 PelB Pectate lyase [Ca 30.7 1.1E+02 0.0024 22.5 4.1 39 32-71 198-240 (345)
80 PF12627 PolyA_pol_RNAbd: Prob 30.0 47 0.001 17.5 1.8 17 2-18 23-39 (64)
81 PF00775 Dioxygenase_C: Dioxyg 28.9 43 0.00094 22.3 1.8 25 46-70 82-124 (183)
82 PF09458 H_lectin: H-type lect 28.9 95 0.0021 16.7 3.0 21 49-70 2-22 (72)
83 KOG4274 Positive cofactor 2 (P 28.8 1.2E+02 0.0026 24.3 4.3 48 6-64 624-675 (742)
84 cd03462 1,2-CCD chlorocatechol 28.8 1E+02 0.0022 21.7 3.6 25 46-70 150-192 (247)
85 smart00107 BTK Bruton's tyrosi 28.0 29 0.00062 16.9 0.6 15 73-87 7-22 (36)
86 PF00718 Polyoma_coat: Polyoma 27.9 1.5E+02 0.0031 21.5 4.3 44 40-86 189-234 (297)
87 KOG1814 Predicted E3 ubiquitin 25.9 75 0.0016 24.3 2.7 19 51-69 77-96 (445)
88 PF15149 CATSPERB: Cation chan 25.3 3.1E+02 0.0067 21.7 5.8 52 3-56 429-483 (540)
89 PF02970 TBCA: Tubulin binding 24.8 66 0.0014 18.8 1.9 14 2-15 8-21 (90)
90 KOG3203 Mitochondrial/chloropl 24.6 48 0.001 21.8 1.3 15 71-86 49-63 (165)
91 TIGR01239 galT_2 galactose-1-p 24.4 1.5E+02 0.0032 23.2 4.0 26 45-79 356-386 (489)
92 PF04314 DUF461: Protein of un 24.1 1.2E+02 0.0026 18.2 3.0 27 32-58 77-103 (110)
93 PF09606 Med15: ARC105 or Med1 23.8 26 0.00057 28.8 0.0 23 50-72 716-738 (799)
94 PF09036 Bcr-Abl_Oligo: Bcr-Ab 23.1 78 0.0017 18.2 1.8 11 2-12 41-51 (79)
95 KOG4657 Uncharacterized conser 22.8 1.8E+02 0.0039 20.4 3.9 42 18-62 157-200 (246)
96 PF14455 Metal_CEHH: Predicted 22.4 1.2E+02 0.0026 20.0 2.8 66 3-72 7-76 (177)
97 PF06943 zf-LSD1: LSD1 zinc fi 22.3 52 0.0011 14.7 0.8 12 59-70 9-20 (25)
98 PF14909 SPATA6: Spermatogenes 21.6 2.4E+02 0.0051 18.2 5.3 51 20-72 86-137 (140)
99 PF05751 FixH: FixH; InterPro 21.3 2.1E+02 0.0046 17.6 5.6 53 5-58 44-96 (146)
100 PRK05270 galactose-1-phosphate 21.3 1.7E+02 0.0037 22.9 3.8 26 45-79 359-389 (493)
101 PRK00907 hypothetical protein; 21.2 39 0.00084 20.1 0.4 10 53-62 11-20 (92)
102 PF11819 DUF3338: Domain of un 20.5 53 0.0012 21.1 0.9 14 56-69 69-86 (138)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-46 Score=236.84 Aligned_cols=101 Identities=75% Similarity=1.373 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccC
Q 045947 1 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (101)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 80 (101)
+|.+||.+|++++++.+++|+++.++++|+++|+++|.||.+||||||.|++.|.||++||++||+|+|.|+||||||+.
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCCCCCCccccC
Q 045947 81 NGSICLDILKEQWSPALTISK 101 (101)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~ 101 (101)
.|.||+|+|+++|+|+.+|++
T Consensus 81 ~G~IclDILk~~WsPAl~i~~ 101 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISK 101 (148)
T ss_pred cccchHHhhhccCChhhHHHH
Confidence 999999999999999999863
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=237.40 Aligned_cols=100 Identities=61% Similarity=1.232 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEEecCC-CcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccC
Q 045947 2 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (101)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 80 (101)
|.+||++|++.+++++++++++.+.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++||||||+.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 689999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCCCCCCccccC
Q 045947 81 NGSICLDILKEQWSPALTISK 101 (101)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~ 101 (101)
+|+||+|+|+++|+|+++|++
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~s 106 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLET 106 (153)
T ss_pred CCCChhHHHhCCCCccccHHH
Confidence 999999999999999999874
No 3
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.2e-42 Score=222.84 Aligned_cols=101 Identities=74% Similarity=1.373 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccC
Q 045947 1 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (101)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 80 (101)
||.+||++|++++++++++++.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCCCCCCccccC
Q 045947 81 NGSICLDILKEQWSPALTISK 101 (101)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~~ 101 (101)
+|.||+++|.++|+|++||++
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~ 101 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSK 101 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHH
Confidence 999999999999999999864
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=8.2e-42 Score=221.14 Aligned_cols=100 Identities=46% Similarity=0.934 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccCC
Q 045947 2 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (101)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~ 81 (101)
++|||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCCCCCCccccC
Q 045947 82 GSICLDILKEQWSPALTISK 101 (101)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~~ 101 (101)
|.||+++|.++|+|++||++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~ 102 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRT 102 (152)
T ss_pred CeEECccCcccCCCCCcHHH
Confidence 99999999999999999864
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-42 Score=214.17 Aligned_cols=99 Identities=48% Similarity=1.060 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccCC
Q 045947 2 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (101)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~ 81 (101)
|.|||.+|+++++++++.||+..|.++|++.|.+.|.||.+|||+||+|++.|.|+++||.+||.|+|.+..|||||+.+
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCCCCCCcccc
Q 045947 82 GSICLDILKEQWSPALTIS 100 (101)
Q Consensus 82 G~iCl~~l~~~W~p~~~i~ 100 (101)
|.+|+|+|+..|+|.|++.
T Consensus 85 G~iClDiLqNrWsp~Ydva 103 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVA 103 (152)
T ss_pred CcchHHHHhcCCCCchhHH
Confidence 9999999999999999875
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-38 Score=205.85 Aligned_cols=100 Identities=48% Similarity=0.927 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHhhcCC---CCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccc
Q 045947 2 ASKRINKELKDLQKDP---PASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNI 78 (101)
Q Consensus 2 a~~RL~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv 78 (101)
|.+||++|++++.+++ ..||.+...++|+.+.++.|.||+|||||||.|.++|++|++||++||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999987 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCcEeccCCCCCCCCCccccC
Q 045947 79 N-SNGSICLDILKEQWSPALTISK 101 (101)
Q Consensus 79 ~-~~G~iCl~~l~~~W~p~~~i~~ 101 (101)
+ .+|.||+|+|+++|++++||.+
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrt 107 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRT 107 (200)
T ss_pred CcccccchhhhhhcccchhhhHHH
Confidence 9 5999999999999999999863
No 7
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=198.91 Aligned_cols=98 Identities=43% Similarity=0.872 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccCCC
Q 045947 3 SKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (101)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 82 (101)
.|||++|+..|+....+||++.|.++|++.|.++|.||++|+|+|..|++.+.||.+||++||.|+|.|+.||||||..|
T Consensus 31 ~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~G 110 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSG 110 (175)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCCCCCCCCcccc
Q 045947 83 SICLDILKEQWSPALTIS 100 (101)
Q Consensus 83 ~iCl~~l~~~W~p~~~i~ 100 (101)
.||+|+|+++|+..|.|+
T Consensus 111 nIcLDILkdKWSa~YdVr 128 (175)
T KOG0421|consen 111 NICLDILKDKWSAVYDVR 128 (175)
T ss_pred cchHHHHHHHHHHHHhHH
Confidence 999999999999999875
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.2e-37 Score=199.13 Aligned_cols=96 Identities=57% Similarity=1.179 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCCCCeeEEecCC-CcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccCCCc
Q 045947 5 RINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (101)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~ 83 (101)
||++|+++++++++.|+.+.+.++ |+.+|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCC-CCCCCcccc
Q 045947 84 ICLDILKE-QWSPALTIS 100 (101)
Q Consensus 84 iCl~~l~~-~W~p~~~i~ 100 (101)
||+++|.. .|+|+++|+
T Consensus 81 icl~~l~~~~W~p~~~i~ 98 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIE 98 (140)
T ss_dssp BGHGGGTTTTC-TTSHHH
T ss_pred chhhhhhcccCCcccccc
Confidence 99999975 599999985
No 9
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.2e-36 Score=194.77 Aligned_cols=98 Identities=58% Similarity=1.182 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccCCCc
Q 045947 4 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (101)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~ 83 (101)
|||++|+++++++++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||.|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCC-CCCCccccC
Q 045947 84 ICLDILKEQ-WSPALTISK 101 (101)
Q Consensus 84 iCl~~l~~~-W~p~~~i~~ 101 (101)
||+++|... |+|+++|++
T Consensus 82 icl~~l~~~~W~p~~~l~~ 100 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRT 100 (141)
T ss_pred CchhhcCCCCcCCcCcHHH
Confidence 999999877 999999753
No 10
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=193.86 Aligned_cols=100 Identities=42% Similarity=0.933 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEEecCC-CcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccC
Q 045947 2 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (101)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 80 (101)
|..-|+++|++|++++..|+.+...++ |+++|.|.|.||++|.|+||.|+..+.||.+||.+||+++|.+++|||||++
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 456799999999999999999988876 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCC-------------CCCCCCccccC
Q 045947 81 NGSICLDILK-------------EQWSPALTISK 101 (101)
Q Consensus 81 ~G~iCl~~l~-------------~~W~p~~~i~~ 101 (101)
+|.+|+++|. +.|+|..|+++
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvet 119 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVET 119 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhH
Confidence 9999999994 46999999875
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-36 Score=188.47 Aligned_cols=101 Identities=40% Similarity=0.907 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEEecCC-----CcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCcc
Q 045947 1 MASKRINKELKDLQKDPPASCSAGPVAD-----DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFH 75 (101)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~H 75 (101)
.|+.||+.|-+.+.++.+-|+.+.|..+ |++.|.+.|.|+++|+||||.|.+++.||++||.+||+++|.+++||
T Consensus 4 ~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~H 83 (158)
T KOG0424|consen 4 IALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFH 83 (158)
T ss_pred hHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcC
Confidence 3678999999999999999999988753 78999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccCCCCC--CCCCccccC
Q 045947 76 PNINSNGSICLDILKEQ--WSPALTISK 101 (101)
Q Consensus 76 Pnv~~~G~iCl~~l~~~--W~p~~~i~~ 101 (101)
|||+.+|.|||++|.++ |+|++||.+
T Consensus 84 PNVypsgtVcLsiL~e~~~W~paitikq 111 (158)
T KOG0424|consen 84 PNVYPSGTVCLSILNEEKDWRPAITIKQ 111 (158)
T ss_pred CCcCCCCcEehhhhccccCCCchhhHHH
Confidence 99999999999999765 999999864
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-36 Score=186.82 Aligned_cols=100 Identities=45% Similarity=0.975 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEEecC-CCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCcccccc
Q 045947 1 MASKRINKELKDLQKDPPASCSAGPVA-DDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (101)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 79 (101)
.|+|||++||++|-.++++||.+.|.+ +|+++|.+.|.||++|+|+||.|..++.||.+||.+||+++|...+|||||+
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 489999999999999999999998875 5899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCC-------------CCCCCCcccc
Q 045947 80 SNGSICLDILK-------------EQWSPALTIS 100 (101)
Q Consensus 80 ~~G~iCl~~l~-------------~~W~p~~~i~ 100 (101)
.+|+||+++|. +.|+|..+|+
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvE 117 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVE 117 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHH
Confidence 99999999994 4699998876
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=4.8e-35 Score=188.08 Aligned_cols=97 Identities=60% Similarity=1.193 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhcCCCCCeeEEecCC-CcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccCCC
Q 045947 4 KRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (101)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 82 (101)
+||++|+++++++.+.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999888776 999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCC-CCCCCCcccc
Q 045947 83 SICLDILK-EQWSPALTIS 100 (101)
Q Consensus 83 ~iCl~~l~-~~W~p~~~i~ 100 (101)
.||+++|. ++|+|+++|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~ 99 (145)
T smart00212 81 EICLDILKQEKWSPATTLE 99 (145)
T ss_pred CEehhhcCCCCCCCCCcHH
Confidence 99999998 8999999975
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=179.43 Aligned_cols=100 Identities=36% Similarity=0.812 Sum_probs=95.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCC-cccccc
Q 045947 1 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNIN 79 (101)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~ 79 (101)
+|.+||+||+.+++.+++.|+... +.+|+.+|.+.+.|.+||.|+|..|+++++||+.||++.|+|.|..++ .||+|+
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 378999999999999999999886 788999999999999999999999999999999999999999999875 699999
Q ss_pred CCCcEeccCCCCCCCCCccccC
Q 045947 80 SNGSICLDILKEQWSPALTISK 101 (101)
Q Consensus 80 ~~G~iCl~~l~~~W~p~~~i~~ 101 (101)
.+|.||||+|.++|+|++++++
T Consensus 94 SNGHICL~iL~d~WsPAmsv~S 115 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQS 115 (161)
T ss_pred cCCeEEEEeecccCCcchhhHH
Confidence 9999999999999999999864
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-32 Score=171.67 Aligned_cols=100 Identities=38% Similarity=0.864 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCee-EEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCcccccc
Q 045947 1 MASKRINKELKDLQKDPPASCS-AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (101)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~~~-~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 79 (101)
+|.+||+||+.+|+++....+. +...++|+..|.+.|. |.+-||..|.|+++|.||.+|||.||+|.|.|+|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4789999999999998776553 4445779999999998 8999999999999999999999999999999999999999
Q ss_pred CCCcEeccCC-CCCCCCCccccC
Q 045947 80 SNGSICLDIL-KEQWSPALTISK 101 (101)
Q Consensus 80 ~~G~iCl~~l-~~~W~p~~~i~~ 101 (101)
+.|.+|+.++ .++|.|+++.+|
T Consensus 81 e~gqvClPiis~EnWkP~T~teq 103 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQ 103 (153)
T ss_pred CCCceeeeeeecccccCcccHHH
Confidence 9999999988 588999998754
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=173.49 Aligned_cols=98 Identities=36% Similarity=0.804 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccCC
Q 045947 2 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (101)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~ 81 (101)
|.|||+|||+.|++++.++|.+.|..+|+.+|+.+|.||++|||+||.|+.+|.||.+||++||.|+++|| +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999997 4556677
Q ss_pred CcEeccCC---CCCCCCCccccC
Q 045947 82 GSICLDIL---KEQWSPALTISK 101 (101)
Q Consensus 82 G~iCl~~l---~~~W~p~~~i~~ 101 (101)
-++||++- .+.|+|+++|++
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVSt 106 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVST 106 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHH
Confidence 89999877 488999999874
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-31 Score=169.65 Aligned_cols=95 Identities=37% Similarity=0.856 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccC-
Q 045947 2 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS- 80 (101)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~- 80 (101)
+.||+..|+..|+.. +..+...++++.+++|.+.||.+|||+||.+++++.+|++||++.|.|.|.++||||||++
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 468999999988775 4567777888999999999999999999999999999999999999999999999999994
Q ss_pred CCcEeccCCCCCCCCCccc
Q 045947 81 NGSICLDILKEQWSPALTI 99 (101)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i 99 (101)
+|.||||+++..|+|.+.+
T Consensus 81 SGsVCLDViNQtWSp~yDL 99 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDL 99 (189)
T ss_pred cCccHHHHHhhhhhHHHHH
Confidence 9999999999999998875
No 18
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-30 Score=166.43 Aligned_cols=97 Identities=38% Similarity=0.815 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEE----ecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCcccc
Q 045947 2 ASKRINKELKDLQKDPPASCSAG----PVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPN 77 (101)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~----~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPn 77 (101)
|+-||++|+.++. .+++++.. +.+-+..+.+++|. |+++.|+||.|.|.+.+|+.||++||+|+|+|++||||
T Consensus 29 a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 29 ALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred HHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 5678888877764 45555432 22223335999997 99999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCCCCCCCCccccC
Q 045947 78 INSNGSICLDILKEQWSPALTISK 101 (101)
Q Consensus 78 v~~~G~iCl~~l~~~W~p~~~i~~ 101 (101)
|+.+|.|||++|+++|+|+.+|.+
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~s 129 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNS 129 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHH
Confidence 999999999999999999999864
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.2e-30 Score=164.74 Aligned_cols=98 Identities=41% Similarity=0.805 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccCCC
Q 045947 3 SKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (101)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 82 (101)
+|.|.+|++.+...++.||.+.++++|+....+.|.||.||||++|.|+..+.+..+||.+||+-+|+|+||||||..+|
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCCCCCCCCcccc
Q 045947 83 SICLDILKEQWSPALTIS 100 (101)
Q Consensus 83 ~iCl~~l~~~W~p~~~i~ 100 (101)
.||++.|+.+|+|+..|.
T Consensus 92 EICVNtLKkDW~p~LGir 109 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIR 109 (223)
T ss_pred eehhhhhhcccCcccchh
Confidence 999999999999998874
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.1e-24 Score=146.58 Aligned_cols=97 Identities=40% Similarity=0.808 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccCC
Q 045947 2 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (101)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~ 81 (101)
|.|||++|.++++ ++...+.+.+.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ +..+..+
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 6899999999998 677788899999999999999999999999999999999999999999999999987 5566778
Q ss_pred CcEeccCCC---CCCCCCccccC
Q 045947 82 GSICLDILK---EQWSPALTISK 101 (101)
Q Consensus 82 G~iCl~~l~---~~W~p~~~i~~ 101 (101)
-+|||++-. +.|.|+++|.+
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRT 111 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRT 111 (314)
T ss_pred ceEEEEecCCCccccCcchhHHH
Confidence 899999884 78999999853
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-18 Score=136.04 Aligned_cols=97 Identities=32% Similarity=0.686 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecC--CccccccCC
Q 045947 4 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTK--VFHPNINSN 81 (101)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~--i~HPnv~~~ 81 (101)
+..+.|++.|..+.+.||.+...++.+....+.|.|+.+|||.+|.|.|.+.||++||.+||.++..+. .++||.|++
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 456677778888899999999999988888999999999999999999999999999999999999975 679999999
Q ss_pred CcEeccCCC-------CCCCCCcccc
Q 045947 82 GSICLDILK-------EQWSPALTIS 100 (101)
Q Consensus 82 G~iCl~~l~-------~~W~p~~~i~ 100 (101)
|+||+++|+ +.|+|+-+|.
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~l 959 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSIL 959 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHH
Confidence 999999995 5699977653
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.4e-16 Score=122.19 Aligned_cols=94 Identities=41% Similarity=0.799 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecC---Ccccccc
Q 045947 3 SKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTK---VFHPNIN 79 (101)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~---i~HPnv~ 79 (101)
.+|+++|++-+.++.++|+.+.+.+..+...++.|.||.+|||++|.|.|+|.||..||..||++++++. .+.||.+
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999976 6799999
Q ss_pred CCCcEeccCCC-------CCCCCC
Q 045947 80 SNGSICLDILK-------EQWSPA 96 (101)
Q Consensus 80 ~~G~iCl~~l~-------~~W~p~ 96 (101)
.+|+||+++|- +.|+|.
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~ 387 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPN 387 (1101)
T ss_pred cCceEEeeeeeecccccccCCCcc
Confidence 99999999882 679887
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.5e-15 Score=102.07 Aligned_cols=91 Identities=24% Similarity=0.426 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCC--CCCeEEEecCCcccccc-C
Q 045947 4 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPF--KPPKVAFRTKVFHPNIN-S 80 (101)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~--~pP~v~f~t~i~HPnv~-~ 80 (101)
-.|+.|+..+.+.+.+||.+.|.-.|-+.|.++|++ ..+.|.||.|+|+|.+|++||. +.|+|.|.+.++||+|. .
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 357888888989999999999999999999999994 5678999999999999999995 79999999999999999 4
Q ss_pred CCcEeccCCCCCCCC
Q 045947 81 NGSICLDILKEQWSP 95 (101)
Q Consensus 81 ~G~iCl~~l~~~W~p 95 (101)
++.+|++-....|.-
T Consensus 101 skeLdl~raf~eWRk 115 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRK 115 (258)
T ss_pred ccceeHhhhhhhhhc
Confidence 899999855455753
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.2e-13 Score=85.29 Aligned_cols=97 Identities=30% Similarity=0.527 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhcCCCCC-eeEEecCC-C--cceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCcccccc
Q 045947 4 KRINKELKDLQKDPPAS-CSAGPVAD-D--MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (101)
Q Consensus 4 ~RL~~E~~~l~~~~~~~-~~~~~~~~-~--~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 79 (101)
-||.+|+.+=++-..++ ++....++ | +..|..+|.||+.|+||+..|.++|...++||..||.|+|.+++--.-|.
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 47888887776654444 33333333 3 56899999999999999999999999999999999999999999888777
Q ss_pred -CCCcEeccCC--CCCCCCCcccc
Q 045947 80 -SNGSICLDIL--KEQWSPALTIS 100 (101)
Q Consensus 80 -~~G~iCl~~l--~~~W~p~~~i~ 100 (101)
.+|.|.-..+ -.+|+-+++++
T Consensus 88 ~~~g~Vd~~~i~~L~~W~~~y~~~ 111 (138)
T KOG0896|consen 88 SSNGVVDPRDITVLARWQRSYSIK 111 (138)
T ss_pred cCCCccCccccchhhcccccchhh
Confidence 4667755322 27898888765
No 25
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.54 E-value=5e-08 Score=62.04 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcE----------EEEEEEcCCCCCCCCCeEEEecC
Q 045947 3 SKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGV----------FLVSIHFPPDYPFKPPKVAFRTK 72 (101)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~----------~~~~i~fp~~YP~~pP~v~f~t~ 72 (101)
..||..||+.|.+ +++.+.++-..|.-.=.-++||-|.|.+ |.+++.+|..||..||.|....-
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 4799999999875 2333333333443333335555555554 55566679999999999977532
Q ss_pred -CccccccCCCcEeccCC
Q 045947 73 -VFHPNINSNGSICLDIL 89 (101)
Q Consensus 73 -i~HPnv~~~G~iCl~~l 89 (101)
--..-.+..|+||++.-
T Consensus 100 dGKTaKMYRGGkIClt~H 117 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDH 117 (161)
T ss_dssp TTT-SSBCCCCBB---TT
T ss_pred CCchhhhhcCceEeeecc
Confidence 12445678999999865
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.53 E-value=1.5e-07 Score=59.65 Aligned_cols=54 Identities=33% Similarity=0.887 Sum_probs=46.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEecCC---ccccccCCCcEec---cCCCCCCCCCccc
Q 045947 46 AGGVFLVSIHFPPDYPFKPPKVAFRTKV---FHPNINSNGSICL---DILKEQWSPALTI 99 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP~~pP~v~f~t~i---~HPnv~~~G~iCl---~~l~~~W~p~~~i 99 (101)
.|+.+.++|.+|++||..||.|....+- +-|||+.+|.+|+ ...-+.|.|.-++
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~ 93 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGII 93 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHH
Confidence 6899999999999999999999998654 6899999999999 6667888886543
No 27
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.7e-08 Score=59.92 Aligned_cols=51 Identities=25% Similarity=0.567 Sum_probs=41.3
Q ss_pred EEEEEEcCCCCCCCCCeEEEecCCc-cccccCCCcEeccCCC-CCCCCCcccc
Q 045947 50 FLVSIHFPPDYPFKPPKVAFRTKVF-HPNINSNGSICLDILK-EQWSPALTIS 100 (101)
Q Consensus 50 ~~~~i~fp~~YP~~pP~v~f~t~i~-HPnv~~~G~iCl~~l~-~~W~p~~~i~ 100 (101)
.-+.+.|+++||+.||.++...|+- -.-|-.+|.||+.+|. +.|+.+++|+
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve 65 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVE 65 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHH
Confidence 3457789999999999999887642 3445589999999994 7799999986
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.26 E-value=2.2e-06 Score=53.62 Aligned_cols=61 Identities=30% Similarity=0.671 Sum_probs=40.4
Q ss_pred cceeEEEEeCCCCCCCCCcEEE--EEEEcCCCCCCCCCeEEEecCCc-----cccccCCCcEeccCCCCCCCC
Q 045947 30 MFHWQATIMGPSDSPFAGGVFL--VSIHFPPDYPFKPPKVAFRTKVF-----HPNINSNGSICLDILKEQWSP 95 (101)
Q Consensus 30 ~~~w~~~i~gp~~tpy~g~~~~--~~i~fp~~YP~~pP~v~f~t~i~-----HPnv~~~G~iCl~~l~~~W~p 95 (101)
+....++|. -.|+|..|. +.|-+|++||.+||.+....... +.+|+.+|+|.+..| ++|++
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~ 99 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNP 99 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--T
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCC
Confidence 445555554 258888885 55557999999999998763321 449999999999888 88987
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=1e-05 Score=51.02 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcE----------EEEEEEcCCCCCCCCCeEEEecC
Q 045947 3 SKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGV----------FLVSIHFPPDYPFKPPKVAFRTK 72 (101)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~----------~~~~i~fp~~YP~~pP~v~f~t~ 72 (101)
..||..||+.|.+ .++.+.++-..|.-.-..++||-|-|.+ |.+++.+|-.||..+|.|....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 4799999999876 3444444455565444457888888776 44555569999999999866421
Q ss_pred -CccccccCCCcEecc
Q 045947 73 -VFHPNINSNGSICLD 87 (101)
Q Consensus 73 -i~HPnv~~~G~iCl~ 87 (101)
--.-..+..|.||+.
T Consensus 103 dgktakmyrggkiclt 118 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLT 118 (167)
T ss_pred CchhhhhhcCceEeec
Confidence 112235578999995
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.31 E-value=0.0011 Score=39.89 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCC
Q 045947 4 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMG--PSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKV 73 (101)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i 73 (101)
.+.+.|+..|..--+... ......+...+.+.+.. ...+.-....+.+.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888876444333 22233445556666632 2344445568999999999999999999887653
No 31
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0021 Score=46.46 Aligned_cols=64 Identities=23% Similarity=0.578 Sum_probs=47.8
Q ss_pred CcceeEEEEeCCCCCCCCCcEEEEEEE--cCCCCCCCCCeEEEecC-----CccccccCCCcEeccCCCCCCCCCc
Q 045947 29 DMFHWQATIMGPSDSPFAGGVFLVSIH--FPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILKEQWSPAL 97 (101)
Q Consensus 29 ~~~~w~~~i~gp~~tpy~g~~~~~~i~--fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~iCl~~l~~~W~p~~ 97 (101)
+++...++| -.+|.|.+|.+-|. +.+.||..||.+..... -.|-+|+.+|.|.|..| .+|.|.-
T Consensus 51 ~ll~~~GTI----p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~ps 121 (365)
T KOG2391|consen 51 LLLQLDGTI----PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPS 121 (365)
T ss_pred chhhccCcc----cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCcc
Confidence 344444555 35788888876655 69999999999876522 13899999999999999 7887653
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.94 E-value=0.0084 Score=35.73 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEecC
Q 045947 46 AGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (101)
..-.+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345588999999999999999998764
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.53 E-value=0.074 Score=33.37 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=40.9
Q ss_pred CCeeEEecCCCcceeEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecC
Q 045947 19 ASCSAGPVADDMFHWQATIMG--PSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (101)
Q Consensus 19 ~~~~~~~~~~~~~~w~~~i~g--p~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (101)
.|+..+...+.-..|.+ |.| -+.+.|....-.+-|.+|..||..+|-..+..|
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P 66 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP 66 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence 36677777777777765 555 567779999999999999999999886655544
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=92.82 E-value=0.64 Score=30.51 Aligned_cols=49 Identities=37% Similarity=0.619 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCCCCCeEEEecCCc---cccccCC-----CcEeccCCC-CCCCCCccc
Q 045947 51 LVSIHFPPDYPFKPPKVAFRTKVF---HPNINSN-----GSICLDILK-EQWSPALTI 99 (101)
Q Consensus 51 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnv~~~-----G~iCl~~l~-~~W~p~~~i 99 (101)
.+.|.|+.+||..+|.|.+....| +||+... ..+|+.--. ..|.++.++
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~ 113 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGP 113 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCH
Confidence 356889999999999887776544 5777755 789995332 456666654
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.06 E-value=1.6 Score=35.44 Aligned_cols=67 Identities=12% Similarity=0.172 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCC-CCCeEEEecC
Q 045947 5 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPF-KPPKVAFRTK 72 (101)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~-~pP~v~f~t~ 72 (101)
-|.+|+..+-. ....+.++-.+-.-..-.+.+.+|-.---..-..++.|.||.+||. .+|.+.|..+
T Consensus 424 nLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhc-cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 35555544422 3344444433334456677777654333222335788999999999 6889888754
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.15 E-value=1.3 Score=30.31 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCCCCe-eEEecCCCcceeEEEEeCCCCC--CCCCcEEEEEEEcCCCCCCCCCeEEE
Q 045947 7 NKELKDLQKDPPASC-SAGPVADDMFHWQATIMGPSDS--PFAGGVFLVSIHFPPDYPFKPPKVAF 69 (101)
Q Consensus 7 ~~E~~~l~~~~~~~~-~~~~~~~~~~~w~~~i~gp~~t--py~g~~~~~~i~fp~~YP~~pP~v~f 69 (101)
.+|+..|...-+..+ .+ .+.+...+.++|.--.+. -+.+ .+.+.+.++++||..+|-|.+
T Consensus 8 e~E~EaLeSIY~de~~~i--~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 8 EEELEALESIYPDEFKHI--NSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred HHHHHHHHHhccchhhhh--hccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 345555555433333 22 233333366666522211 2222 788899999999999999944
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=87.27 E-value=2.1 Score=30.73 Aligned_cols=57 Identities=21% Similarity=0.449 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEE
Q 045947 4 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 69 (101)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f 69 (101)
++|.+|+.++..+.. .-...++++...++.+.. +...+.++|.++.+||.++|.+..
T Consensus 102 s~ll~EIe~IGW~kl---~~i~~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~ 158 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKL---VQIQFDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSL 158 (291)
T ss_dssp -CHHHHHHHHHCGCC---EEEEE-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS
T ss_pred HHHHHHHHHhccccc---eEEecCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeC
Confidence 467788887765422 111236778888888862 126788999999999999997543
No 38
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=80.35 E-value=3.4 Score=26.42 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=22.9
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeEEEec
Q 045947 46 AGGVFLVSIHFPPDYP-FKPPKVAFRT 71 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP-~~pP~v~f~t 71 (101)
+.|.|.|.-.+|-.|| ..||.|+|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4588999999999999 9999999873
No 39
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=79.32 E-value=3.7 Score=27.59 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=23.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEec
Q 045947 46 AGGVFLVSIHFPPDYPFKPPKVAFRT 71 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP~~pP~v~f~t 71 (101)
+.|.|.|+=.+|--||..+|.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 45779999999999999999999974
No 40
>smart00340 HALZ homeobox associated leucin zipper.
Probab=77.32 E-value=2.3 Score=21.67 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcC
Q 045947 3 SKRINKELKDLQKD 16 (101)
Q Consensus 3 ~~RL~~E~~~l~~~ 16 (101)
.+||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999764
No 41
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=74.80 E-value=6 Score=25.79 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=22.6
Q ss_pred CCcEEEEEEEcCCCCC-----CCCCeEEEec
Q 045947 46 AGGVFLVSIHFPPDYP-----FKPPKVAFRT 71 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP-----~~pP~v~f~t 71 (101)
+.|.|.|+-.+|-.|| ..||.|+|.-
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 3577999999999999 8999999874
No 42
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=73.09 E-value=1.7 Score=28.67 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=11.8
Q ss_pred ccccCCCcEeccCC
Q 045947 76 PNINSNGSICLDIL 89 (101)
Q Consensus 76 Pnv~~~G~iCl~~l 89 (101)
+||+.+|+||+...
T Consensus 98 ~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 98 FNVYSNGSVCWGNN 111 (175)
T ss_pred cccCCCCcEeeCCC
Confidence 59999999999653
No 43
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=70.15 E-value=2.5 Score=29.37 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=13.1
Q ss_pred Ccc---ccccCCCcEeccCC
Q 045947 73 VFH---PNINSNGSICLDIL 89 (101)
Q Consensus 73 i~H---Pnv~~~G~iCl~~l 89 (101)
+|| .||+++|+||+.-.
T Consensus 133 L~~aPffNV~~~G~VC~G~~ 152 (228)
T TIGR03737 133 LYQAPLFNVWSNGEICAGNA 152 (228)
T ss_pred eccCCcCccCCCCeEeeCCC
Confidence 555 38999999999644
No 44
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=69.19 E-value=10 Score=27.82 Aligned_cols=41 Identities=27% Similarity=0.563 Sum_probs=33.2
Q ss_pred ceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEe-cCCcccc
Q 045947 31 FHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR-TKVFHPN 77 (101)
Q Consensus 31 ~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~-t~i~HPn 77 (101)
..+++.| ||.|...+-+|.|...||..||-+.|. ..-|+|-
T Consensus 54 DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 54 DRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred ceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 3555555 689999999999999999999999996 3347774
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=66.62 E-value=20 Score=26.33 Aligned_cols=25 Identities=28% Similarity=0.584 Sum_probs=21.2
Q ss_pred cEEEEEEEcCCCCCCCCCeEEEecC
Q 045947 48 GVFLVSIHFPPDYPFKPPKVAFRTK 72 (101)
Q Consensus 48 ~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (101)
-.|-+.+.+|..||...|.++|.+-
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEee
Confidence 3477888899999999999999763
No 46
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=66.04 E-value=11 Score=25.43 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeEEEe
Q 045947 46 AGGVFLVSIHFPPDYPF-----KPPKVAFR 70 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP~-----~pP~v~f~ 70 (101)
+.|.|.|+-..|-.||. .||.|+|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 35779999999999998 99999886
No 47
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=63.55 E-value=13 Score=24.86 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.8
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeEEEe
Q 045947 47 GGVFLVSIHFPPDYPF-----KPPKVAFR 70 (101)
Q Consensus 47 g~~~~~~i~fp~~YP~-----~pP~v~f~ 70 (101)
.|.|.|+-.+|-.||. .||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4779999999999995 89998886
No 48
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=63.05 E-value=28 Score=20.22 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=28.1
Q ss_pred ceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCc
Q 045947 31 FHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVF 74 (101)
Q Consensus 31 ~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~ 74 (101)
.+|.+-+.|+.+.-...-+=++...+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 47999999877765566677888888888885 6666655533
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=60.52 E-value=13 Score=27.05 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.0
Q ss_pred cEEEEEEEcCCCCCCCCCeEEEecC
Q 045947 48 GVFLVSIHFPPDYPFKPPKVAFRTK 72 (101)
Q Consensus 48 ~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (101)
-.+.+++..++.||.+.|+|....|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4577888899999999999999876
No 50
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.42 E-value=18 Score=24.39 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCC
Q 045947 3 SKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDS 43 (101)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t 43 (101)
.+|+++|++++++.--..++.-|.-+..-.+.+.+.-.+++
T Consensus 121 ~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~ 161 (203)
T KOG3285|consen 121 LKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT 161 (203)
T ss_pred HHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc
Confidence 68999999999998777787777766667777777654443
No 51
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=56.11 E-value=39 Score=19.99 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=20.3
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeEEEecC
Q 045947 45 FAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (101)
Q Consensus 45 y~g~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (101)
-||..+.|.-.-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35667777777789999 689998865
No 52
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=54.60 E-value=59 Score=21.36 Aligned_cols=66 Identities=21% Similarity=0.381 Sum_probs=43.0
Q ss_pred HHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEE--EEEEEcCCCCCCCCCeEEEec---CCccccccC
Q 045947 6 INKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVF--LVSIHFPPDYPFKPPKVAFRT---KVFHPNINS 80 (101)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~--~~~i~fp~~YP~~pP~v~f~t---~i~HPnv~~ 80 (101)
+..++++.+..-..|+++....++ +.+ .|-+- ...+. .+||.|-+.- .--|+-+..
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS------ldPPlvlv~l~~~s~~~~~i~~ 66 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT------DTPPSVMVCINANSAMNPVFQG 66 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE------cCCCEEEEEECCCCchhHHHHh
Confidence 456788889888999987543221 111 11111 12333 3699988762 356888999
Q ss_pred CCcEeccCCC
Q 045947 81 NGSICLDILK 90 (101)
Q Consensus 81 ~G~iCl~~l~ 90 (101)
.|..|+++|.
T Consensus 67 sg~F~VnvL~ 76 (170)
T PRK15486 67 NGKLCINVLN 76 (170)
T ss_pred CCeEEEEECh
Confidence 9999999995
No 53
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=50.71 E-value=10 Score=23.36 Aligned_cols=21 Identities=33% Similarity=0.737 Sum_probs=16.8
Q ss_pred CCCcEeccCCCCCCCCCcccc
Q 045947 80 SNGSICLDILKEQWSPALTIS 100 (101)
Q Consensus 80 ~~G~iCl~~l~~~W~p~~~i~ 100 (101)
..|.+|.-.+..+|+|.+++.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEE
Confidence 456678888889999999874
No 54
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=49.80 E-value=29 Score=24.96 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.3
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeEEEe
Q 045947 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (101)
+.|.|.|.=.+|..|| ..||.|+|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 3577999999999997 678999987
No 55
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=49.27 E-value=31 Score=23.82 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=20.8
Q ss_pred CcEEEEEEEcCCCCCC-------CCCeEEEe
Q 045947 47 GGVFLVSIHFPPDYPF-------KPPKVAFR 70 (101)
Q Consensus 47 g~~~~~~i~fp~~YP~-------~pP~v~f~ 70 (101)
.|.|.|+-..|-.||. .||.|+|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5779999999999975 89999985
No 56
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=48.31 E-value=21 Score=28.19 Aligned_cols=29 Identities=31% Similarity=0.796 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEEEcCCCCCC---CCCeEEEecC
Q 045947 43 SPFAGGVFLVSIHFPPDYPF---KPPKVAFRTK 72 (101)
Q Consensus 43 tpy~g~~~~~~i~fp~~YP~---~pP~v~f~t~ 72 (101)
+||.=|.|.+ +.+|++||+ +-|.+.|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4788888875 567999998 7899999987
No 57
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=46.72 E-value=34 Score=24.46 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=21.5
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeEEEe
Q 045947 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (101)
+.|.|.|.-..|..|| ..||.|+|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 3678999999999999 589999986
No 58
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=46.63 E-value=17 Score=19.92 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhc
Q 045947 3 SKRINKELKDLQK 15 (101)
Q Consensus 3 ~~RL~~E~~~l~~ 15 (101)
.+||++|++++--
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 3689999988754
No 59
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=46.27 E-value=37 Score=23.46 Aligned_cols=25 Identities=24% Similarity=0.640 Sum_probs=21.4
Q ss_pred CCcEEEEEEEcCCCCCC-------CCCeEEEe
Q 045947 46 AGGVFLVSIHFPPDYPF-------KPPKVAFR 70 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP~-------~pP~v~f~ 70 (101)
+.|.|.|.=.+|-.||. .||.|+|.
T Consensus 116 ~~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 116 SDGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 36789999999999986 89999885
No 60
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=43.56 E-value=41 Score=24.13 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.1
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeEEEe
Q 045947 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (101)
+.|.|.|+=..|..|| ..||.|+|.
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 3577999999999997 578999886
No 61
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=43.18 E-value=98 Score=20.63 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCC---CCCCCCCcEEEEEEEcCCCCCCC
Q 045947 4 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGP---SDSPFAGGVFLVSIHFPPDYPFK 63 (101)
Q Consensus 4 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp---~~tpy~g~~~~~~i~fp~~YP~~ 63 (101)
.++.+++.++..... ...+...++.-..|.+.+.+. +.. ...+.+.+++.+|+-|-.+
T Consensus 55 ~~~~~~l~~~l~~~~-~~~l~f~d~p~~~y~~~~~~~~~~~~~-~~~~~~ti~f~c~dPy~y~ 115 (249)
T PF05709_consen 55 EQKRRELASWLNPKE-PVKLIFDDDPDKYYYAKVSGSPDPDEG-NNSGTFTITFTCPDPYAYS 115 (249)
T ss_dssp HHHHHHHHHHH--SS--EEEEETTSTT-EEEEEEEEEEE--SS-SSCEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCcCC-CEEEEEECCCCEEEEEEECCccccccc-ceeEEEEEEEEECCceeee
Confidence 466778888775433 377777777677888888763 222 3334666666664444333
No 62
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=42.43 E-value=14 Score=23.77 Aligned_cols=30 Identities=27% Similarity=0.651 Sum_probs=24.0
Q ss_pred CCCCeEEEe---cCCccccccCCCcEeccCCCC
Q 045947 62 FKPPKVAFR---TKVFHPNINSNGSICLDILKE 91 (101)
Q Consensus 62 ~~pP~v~f~---t~i~HPnv~~~G~iCl~~l~~ 91 (101)
.+||.|-+. ..--|+.|..+|..|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 479998886 235688899999999999963
No 63
>PRK11700 hypothetical protein; Provisional
Probab=42.40 E-value=1.1e+02 Score=20.77 Aligned_cols=61 Identities=18% Similarity=0.474 Sum_probs=38.4
Q ss_pred CcceeEEEE---eCCCCCCC-CCcEEEEEEEcC--------------CCCCCCCCeEEEe--cC------Ccccccc-CC
Q 045947 29 DMFHWQATI---MGPSDSPF-AGGVFLVSIHFP--------------PDYPFKPPKVAFR--TK------VFHPNIN-SN 81 (101)
Q Consensus 29 ~~~~w~~~i---~gp~~tpy-~g~~~~~~i~fp--------------~~YP~~pP~v~f~--t~------i~HPnv~-~~ 81 (101)
.+..|.+.+ .-|.+.-| ..|.=++++++| .+.+..++-|++. +| .-+|-|. .+
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 344665443 34655555 668888999998 3344555555554 33 5677776 68
Q ss_pred CcEeccCC
Q 045947 82 GSICLDIL 89 (101)
Q Consensus 82 G~iCl~~l 89 (101)
|.+|+.+-
T Consensus 167 ~~vcIK~H 174 (187)
T PRK11700 167 GGICIKFH 174 (187)
T ss_pred CCEEEEEc
Confidence 99998653
No 64
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=41.79 E-value=47 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.575 Sum_probs=20.9
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeEEEe
Q 045947 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (101)
+.|.|.|.-.+|..|| ..||.|+|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 3577999999998887 588999886
No 65
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=41.77 E-value=9.1 Score=18.23 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=9.1
Q ss_pred CccccccCCCc-Eecc
Q 045947 73 VFHPNINSNGS-ICLD 87 (101)
Q Consensus 73 i~HPnv~~~G~-iCl~ 87 (101)
-|||.++.+|+ .|-.
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 38999998776 5554
No 66
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=39.28 E-value=56 Score=22.97 Aligned_cols=25 Identities=28% Similarity=0.696 Sum_probs=20.9
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeEEEe
Q 045947 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (101)
+.|.|.|.=..|..|| ..||.|+|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 4678999999999997 478999886
No 67
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=38.88 E-value=61 Score=23.08 Aligned_cols=30 Identities=23% Similarity=0.363 Sum_probs=26.4
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCC--CeEEEec
Q 045947 42 DSPFAGGVFLVSIHFPPDYPFKP--PKVAFRT 71 (101)
Q Consensus 42 ~tpy~g~~~~~~i~fp~~YP~~p--P~v~f~t 71 (101)
.+.+.|..|++.+..|.+||-.. |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 45688999999999999999988 9999985
No 68
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.94 E-value=6.3 Score=26.67 Aligned_cols=20 Identities=35% Similarity=0.735 Sum_probs=17.6
Q ss_pred CCcEeccCCCCCCCCCcccc
Q 045947 81 NGSICLDILKEQWSPALTIS 100 (101)
Q Consensus 81 ~G~iCl~~l~~~W~p~~~i~ 100 (101)
.+..|+++|..-|+|.+|++
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~e 154 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIE 154 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHH
Confidence 56799999999999999875
No 69
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=37.87 E-value=38 Score=21.59 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCCcceeEEEEeCCCCCCCC-CcEEEEEEEc
Q 045947 27 ADDMFHWQATIMGPSDSPFA-GGVFLVSIHF 56 (101)
Q Consensus 27 ~~~~~~w~~~i~gp~~tpy~-g~~~~~~i~f 56 (101)
..|...|.|++.|++|++.. ...|-+.+.|
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheeeH
Confidence 45677889999999998874 4444444444
No 70
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=37.49 E-value=1e+02 Score=23.59 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=11.7
Q ss_pred EEEEEEcCCCCCC
Q 045947 50 FLVSIHFPPDYPF 62 (101)
Q Consensus 50 ~~~~i~fp~~YP~ 62 (101)
..+.+.||.+|+.
T Consensus 211 k~i~vtFP~dy~a 223 (441)
T COG0544 211 KDIKVTFPEDYHA 223 (441)
T ss_pred eEEEEEcccccch
Confidence 7788999999997
No 71
>TIGR01633 phi3626_gp14_N putative phage tail component, N-terminal domain. This model represents the best-conserved region of about 125 amino acids, toward the N-terminus, of a family of proteins from temperate phage of a number of Gram-positive bacteria. These phage proteins range in length from 230 to 525 amino acids.
Probab=37.12 E-value=93 Score=18.54 Aligned_cols=56 Identities=11% Similarity=-0.005 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCC--CCCCCcEEEEEEEcCCC
Q 045947 3 SKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSD--SPFAGGVFLVSIHFPPD 59 (101)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~--tpy~g~~~~~~i~fp~~ 59 (101)
.+.+.++++.++.... ...+...++.-.-|.+.+.+..+ .....|.+.+++.+|+-
T Consensus 64 ~~~~~~~l~~~L~~~~-~~~L~f~dePd~yy~a~~~~~~~~~~~~~~~~~titF~c~dP 121 (124)
T TIGR01633 64 LRELFRELAGWLNSQE-PVPLIFSDEPDKTYYARVDEEIDLDEDTTFGKGTLNFICPDP 121 (124)
T ss_pred HHHHHHHHHHHhCCCC-CcceEeccCCCcEEEEEEcCccCHHHhhcccEEEEEEEecCC
Confidence 3566777777776432 33455555555678888876221 11334777777777653
No 72
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=36.18 E-value=1.1e+02 Score=21.81 Aligned_cols=46 Identities=24% Similarity=0.489 Sum_probs=31.3
Q ss_pred CcceeEEEEeCCCCCCCCCcE----EEEEEEcC-----CCCCCCCCeEEEecCCcc
Q 045947 29 DMFHWQATIMGPSDSPFAGGV----FLVSIHFP-----PDYPFKPPKVAFRTKVFH 75 (101)
Q Consensus 29 ~~~~w~~~i~gp~~tpy~g~~----~~~~i~fp-----~~YP~~pP~v~f~t~i~H 75 (101)
|..-|++... -.+|.-..|+ |+..+.+. -+-||.||+|+.+++-|.
T Consensus 101 Dp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 4556777776 4455444444 55566654 688999999999988664
No 73
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=35.78 E-value=1.5e+02 Score=20.40 Aligned_cols=68 Identities=25% Similarity=0.464 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhhc---CCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCC------------------
Q 045947 2 ASKRINKELKDLQK---DPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDY------------------ 60 (101)
Q Consensus 2 a~~RL~~E~~~l~~---~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~Y------------------ 60 (101)
+..||.+.++++++ +.+.| |.+.+. |...---|| |.+.+.|.++=
T Consensus 10 ~~eR~~e~~~~~k~~L~~a~~G------------W~~~yy-p~~~~~~GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~ 75 (235)
T PF14135_consen 10 PAERINEALAEYKKILTSAPNG------------WKLEYY-PKTDQSYGG-YTFLMKFDDDGKVTMASDFDSASTPSTSS 75 (235)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc------------eEEEEE-CCCCccCCc-EEEEEEECCCCeEEEEEccCCCCceeeEE
Confidence 46788887777665 23333 665665 332211223 66666665433
Q ss_pred -C---CCCCeEEEec--CCccccccCCCc
Q 045947 61 -P---FKPPKVAFRT--KVFHPNINSNGS 83 (101)
Q Consensus 61 -P---~~pP~v~f~t--~i~HPnv~~~G~ 83 (101)
- ..-|.+.|.| ++.|-..++++.
T Consensus 76 Y~~~~~~gp~LsFdTyN~~iH~~s~p~~~ 104 (235)
T PF14135_consen 76 YRLKQDQGPVLSFDTYNEYIHYFSDPSNS 104 (235)
T ss_pred EEEecCCceEEEEEeCCceEEEccCCCcc
Confidence 1 2347788875 366766654433
No 74
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=35.51 E-value=21 Score=22.93 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=41.3
Q ss_pred HHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEe---cCCccccccCCCcE
Q 045947 8 KELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR---TKVFHPNINSNGSI 84 (101)
Q Consensus 8 ~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~---t~i~HPnv~~~G~i 84 (101)
+++++.+..-..|+.+....++ +.+ .|. .+.-=..--.+||.+.+. +.--|+.+..+|..
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~~------------~~~-~g~----tvss~~svS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDGP------------AGR-AGF----TASAVCSVTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEeecC------------CCc-eeE----EEEeEeeccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 5788888888888877543211 111 111 111111234579998886 23458889999999
Q ss_pred eccCCC
Q 045947 85 CLDILK 90 (101)
Q Consensus 85 Cl~~l~ 90 (101)
++++|.
T Consensus 67 ~VnvL~ 72 (156)
T TIGR03615 67 CVNTLA 72 (156)
T ss_pred EEEECc
Confidence 999995
No 75
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=34.07 E-value=74 Score=22.51 Aligned_cols=25 Identities=24% Similarity=0.592 Sum_probs=20.5
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeEEEe
Q 045947 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (101)
+.|.|.|.-..|..|| ..||.|+|.
T Consensus 155 ~~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 155 EDGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 3577999999998886 578999886
No 76
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=33.98 E-value=1.1e+02 Score=22.46 Aligned_cols=40 Identities=23% Similarity=0.455 Sum_probs=26.5
Q ss_pred CC-CcEEEEEEEcC-----CCCCCCCCeEEEecCCccccccCCCcE
Q 045947 45 FA-GGVFLVSIHFP-----PDYPFKPPKVAFRTKVFHPNINSNGSI 84 (101)
Q Consensus 45 y~-g~~~~~~i~fp-----~~YP~~pP~v~f~t~i~HPnv~~~G~i 84 (101)
|+ |...-++..|= +.=+-..|+|.|.-.+|||||-..-+.
T Consensus 284 w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~~r~ 329 (334)
T KOG3696|consen 284 WAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPAERQ 329 (334)
T ss_pred ccccceeEeechhhcccccCCCcccCceEEEEEeccCccccccccc
Confidence 54 44444555553 344457889999999999999854333
No 77
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=33.70 E-value=32 Score=22.41 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=23.1
Q ss_pred CCCeEEEec---CCccccccCCCcEeccCCCC
Q 045947 63 KPPKVAFRT---KVFHPNINSNGSICLDILKE 91 (101)
Q Consensus 63 ~pP~v~f~t---~i~HPnv~~~G~iCl~~l~~ 91 (101)
+||.|.+.- .--++|+.++|..|+++|.+
T Consensus 45 ~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~~ 76 (176)
T COG1853 45 EPPLVLVCVNKSSDTWPNIEETGEFVVNVLSE 76 (176)
T ss_pred CCCEEEEEecCCcchhhhhhhcCEEEEEeCCH
Confidence 588887763 34588999999999999964
No 78
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=31.80 E-value=24 Score=22.67 Aligned_cols=17 Identities=35% Similarity=0.897 Sum_probs=13.1
Q ss_pred EEEEEEcCCCCCCCCCe
Q 045947 50 FLVSIHFPPDYPFKPPK 66 (101)
Q Consensus 50 ~~~~i~fp~~YP~~pP~ 66 (101)
|+-.-.+|.+||+.+|.
T Consensus 104 YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 104 YRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHhcCCCCCCCccchH
Confidence 44555789999998885
No 79
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=30.70 E-value=1.1e+02 Score=22.52 Aligned_cols=39 Identities=33% Similarity=0.679 Sum_probs=27.7
Q ss_pred eeEEEEeCCCCC-CCCCcEEEEEEE---cCCCCCCCCCeEEEec
Q 045947 32 HWQATIMGPSDS-PFAGGVFLVSIH---FPPDYPFKPPKVAFRT 71 (101)
Q Consensus 32 ~w~~~i~gp~~t-py~g~~~~~~i~---fp~~YP~~pP~v~f~t 71 (101)
+|+..+.|-+++ -|++|.+++++. |-.-+ .+.|+|||=.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeE
Confidence 688999995554 788999988776 33333 3567999853
No 80
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=30.00 E-value=47 Score=17.50 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHhhcCCC
Q 045947 2 ASKRINKELKDLQKDPP 18 (101)
Q Consensus 2 a~~RL~~E~~~l~~~~~ 18 (101)
+..||..|+..+...+.
T Consensus 23 s~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 23 SKERIREELEKILSSPN 39 (64)
T ss_dssp -HHHHHHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 56799999999887654
No 81
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=28.95 E-value=43 Score=22.30 Aligned_cols=25 Identities=28% Similarity=0.685 Sum_probs=16.1
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeEEEe
Q 045947 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (101)
+.|.|.|+-..|-.|| ..||.|+|.
T Consensus 82 ~~G~y~f~Ti~Pg~Y~~~~dG~~g~ll~~~g~~~~Rp~HIH~~ 124 (183)
T PF00775_consen 82 ADGRYSFRTIKPGPYPIPDDGPVGFLLRALGRHPWRPAHIHFK 124 (183)
T ss_dssp TTSEEEEEEE----EEESTTSHHHHHHHHTTTTEEE-SEEEEE
T ss_pred CCCEEEEEeeCCCCCCCCCccHHHHHHhhhccCCCcCCeEEEE
Confidence 4577999999999988 578998886
No 82
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=28.91 E-value=95 Score=16.73 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=12.0
Q ss_pred EEEEEEEcCCCCCCCCCeEEEe
Q 045947 49 VFLVSIHFPPDYPFKPPKVAFR 70 (101)
Q Consensus 49 ~~~~~i~fp~~YP~~pP~v~f~ 70 (101)
.+..+|.|+..|.. +|+|.+.
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~ 22 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVS 22 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEE
Confidence 35678999999986 8888664
No 83
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=28.85 E-value=1.2e+02 Score=24.34 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCCCeeEEec----CCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCC
Q 045947 6 INKELKDLQKDPPASCSAGPV----ADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKP 64 (101)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~----~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~p 64 (101)
|++|+.+|... +.|.++ ++|-....+.|. .+.-| -+++..|.+||.-.
T Consensus 624 lqgElarLD~k----F~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq~ 675 (742)
T KOG4274|consen 624 LQGELARLDAK----FEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQN 675 (742)
T ss_pred HHHHHHhhccc----eeecCCcccccCCeeEEEEEec-CCCCC------Ceeeeccccccccc
Confidence 67787777543 444333 234223333332 33333 38999999999855
No 84
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=28.79 E-value=1e+02 Score=21.72 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=20.4
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeEEEe
Q 045947 46 AGGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (101)
Q Consensus 46 ~g~~~~~~i~fp~~YP------------------~~pP~v~f~ 70 (101)
+.|.|.|.=..|..|| ..||.|+|.
T Consensus 150 ~~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 192 (247)
T cd03462 150 EDGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFK 192 (247)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 4677999999998885 478999886
No 85
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=28.03 E-value=29 Score=16.95 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=11.1
Q ss_pred CccccccCCCc-Eecc
Q 045947 73 VFHPNINSNGS-ICLD 87 (101)
Q Consensus 73 i~HPnv~~~G~-iCl~ 87 (101)
-|||.+..+|+ .|-.
T Consensus 7 ~yHP~~~~~G~W~CC~ 22 (36)
T smart00107 7 KYHPSFWVDGKWLCCQ 22 (36)
T ss_pred ccCCCceeCCeEccCC
Confidence 38999998876 5553
No 86
>PF00718 Polyoma_coat: Polyomavirus coat protein This family is a subset of the SCOP family; InterPro: IPR000662 This entry represents the major capsid protein VP1 (viral protein 1) from Polyomaviruses, such as Murine polyomavirus (strain P16 small-plaque) (MPyV) []. Polyomaviruses are dsDNA viruses with no RNA stage in their life cycle. The virus capsid is composed of 72 icosahedral units, each of which is composed of five copies of VP1. The virus attaches to the cell surface by recognition of oligosaccharides terminating in alpha(2,3)-linked sialic acid. The capsid protein VP1 forms a pentamer. The complete capsid is composed of 72 VP1 pentamers, with a minor capsid protein, VP2 or VP3, inserted into the centre of each pentamer like a hairpin. This structure restricts the exposure of internal proteins during viral entry. Polyomavirus coat assembly is rigorously controlled by chaperone-mediated assembly. During viral infection, the heat shock chaperone hsc70 binds VP1 and co-localises it in the nucleus, thereby regulating capsid assembly [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 3NXG_C 3NXD_D 1CN3_C 1SID_D 1VPS_B 1SIE_A 1VPN_A 3S7V_F 3S7X_A 3BWQ_C ....
Probab=27.88 E-value=1.5e+02 Score=21.54 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=24.9
Q ss_pred CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecCCccccccCCCc--Eec
Q 045947 40 PSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS--ICL 86 (101)
Q Consensus 40 p~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~--iCl 86 (101)
|+-+-=|+.+|..++.=.. ..||.+.|....-.+.+|++|. +|.
T Consensus 189 PDPskNENtRYFG~~tGG~---~TPPVl~ftNt~TTvLLDENGVGpLCk 234 (297)
T PF00718_consen 189 PDPSKNENTRYFGSYTGGA---NTPPVLQFTNTVTTVLLDENGVGPLCK 234 (297)
T ss_dssp E-TTSSTTEEEEEEEE-SS---S---EEEEESSEEEE---TTS--EEEC
T ss_pred CCCCcCcCceeeEeecCCC---CCCCeEEeccceeEEEEccCCcccccc
Confidence 4545556677776666433 3589999998888888998864 776
No 87
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.93 E-value=75 Score=24.26 Aligned_cols=19 Identities=42% Similarity=1.004 Sum_probs=13.1
Q ss_pred EEEEEcCCCCCC-CCCeEEE
Q 045947 51 LVSIHFPPDYPF-KPPKVAF 69 (101)
Q Consensus 51 ~~~i~fp~~YP~-~pP~v~f 69 (101)
.+...+|++||. +||.+..
T Consensus 77 vlkf~LP~~YPs~spP~f~l 96 (445)
T KOG1814|consen 77 VLKFHLPNDYPSVSPPKFEL 96 (445)
T ss_pred eeeeecCCccccCCCCceee
Confidence 356678999998 5665433
No 88
>PF15149 CATSPERB: Cation channel sperm-associated protein subunit beta protein family
Probab=25.26 E-value=3.1e+02 Score=21.66 Aligned_cols=52 Identities=15% Similarity=0.299 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhcC---CCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEc
Q 045947 3 SKRINKELKDLQKD---PPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHF 56 (101)
Q Consensus 3 ~~RL~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f 56 (101)
.+|+++-++.+.+. .+.|..+......+++++|.+. +|--|.+..=+|+|..
T Consensus 429 v~k~k~~le~~l~~~vYNP~gLnlsi~GSeLFHFRVsvv--pGvtFCnL~~EFqIYV 483 (540)
T PF15149_consen 429 VKKMKNYLEPILNSPVYNPLGLNLSIKGSELFHFRVSVV--PGVTFCNLVEEFQIYV 483 (540)
T ss_pred HHHHHHHHHhhcCcceeCcccceEEEEecceeEEEEEee--cCceeccchhheEEEe
Confidence 57888888888776 5678888888899999999886 4555666665555554
No 89
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=24.80 E-value=66 Score=18.82 Aligned_cols=14 Identities=36% Similarity=0.377 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHhhc
Q 045947 2 ASKRINKELKDLQK 15 (101)
Q Consensus 2 a~~RL~~E~~~l~~ 15 (101)
+.+||.+|+....+
T Consensus 8 ~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 8 VVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999876543
No 90
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=24.62 E-value=48 Score=21.80 Aligned_cols=15 Identities=20% Similarity=0.680 Sum_probs=10.0
Q ss_pred cCCccccccCCCcEec
Q 045947 71 TKVFHPNINSNGSICL 86 (101)
Q Consensus 71 t~i~HPnv~~~G~iCl 86 (101)
.|+|||+.|- |.+|+
T Consensus 49 KPiYhP~~Dc-GD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTDC-GDHVV 63 (165)
T ss_pred CCccCCccCC-CCEEE
Confidence 3689999883 44443
No 91
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=24.41 E-value=1.5e+02 Score=23.17 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=18.9
Q ss_pred CCCcEEEEEEEcC-----CCCCCCCCeEEEecCCcccccc
Q 045947 45 FAGGVFLVSIHFP-----PDYPFKPPKVAFRTKVFHPNIN 79 (101)
Q Consensus 45 y~g~~~~~~i~fp-----~~YP~~pP~v~f~t~i~HPnv~ 79 (101)
-.||.|.+.+.+- ++||. -||||+-+
T Consensus 356 ~~~~~yElDLVLRnN~Tsee~P~---------GIFHPH~e 386 (489)
T TIGR01239 356 RRDGKYELDLVLRDNQTSEEYPD---------GIFHPHQD 386 (489)
T ss_pred ecCCceEEEEEeecCCCccccCC---------ccccCcHh
Confidence 5688999999984 44554 58898643
No 92
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=24.12 E-value=1.2e+02 Score=18.19 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCCCCCCcEEEEEEEcCC
Q 045947 32 HWQATIMGPSDSPFAGGVFLVSIHFPP 58 (101)
Q Consensus 32 ~w~~~i~gp~~tpy~g~~~~~~i~fp~ 58 (101)
-.++.+.|++..+=.|..+.++|.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 367888898888889999999999854
No 93
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=23.82 E-value=26 Score=28.79 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCCCCCCeEEEecC
Q 045947 50 FLVSIHFPPDYPFKPPKVAFRTK 72 (101)
Q Consensus 50 ~~~~i~fp~~YP~~pP~v~f~t~ 72 (101)
=-+.|.+|.+||..+|.+.+.+.
T Consensus 716 PPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 716 PPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -----------------------
T ss_pred CCeeEeCCCCCCccCCcCcccHH
Confidence 35789999999999999877543
No 94
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=23.08 E-value=78 Score=18.17 Aligned_cols=11 Identities=18% Similarity=0.564 Sum_probs=8.6
Q ss_pred hHHHHHHHHHH
Q 045947 2 ASKRINKELKD 12 (101)
Q Consensus 2 a~~RL~~E~~~ 12 (101)
++|||++|+..
T Consensus 41 sirrLeqevnk 51 (79)
T PF09036_consen 41 SIRRLEQEVNK 51 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57899998854
No 95
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.80 E-value=1.8e+02 Score=20.44 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcC--CCCCC
Q 045947 18 PASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFP--PDYPF 62 (101)
Q Consensus 18 ~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp--~~YP~ 62 (101)
..|+.+++.-++..++..+=..|++. ...|.|+|.+. -+||.
T Consensus 157 yLGleie~~hgevikfiFTnIdpkdp---~~~FsF~vhL~e~~Dy~V 200 (246)
T KOG4657|consen 157 YLGLEIEAGHGEVIKFIFTNIDPKDP---TREFSFTVHLGEDIDYQV 200 (246)
T ss_pred hcCceeeeccCceEEEEEeccCCCCC---ccceeeEEeeccccCccc
Confidence 45788888888887777776666655 34566666654 46765
No 96
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=22.37 E-value=1.2e+02 Score=20.00 Aligned_cols=66 Identities=11% Similarity=0.215 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhcCC----CCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecC
Q 045947 3 SKRINKELKDLQKDP----PASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (101)
Q Consensus 3 ~~RL~~E~~~l~~~~----~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (101)
.+...+|+..+.... -.|+.+. +.+.=...+.+..|+-.|= --...+++.| .+|-..||.|.|..+
T Consensus 7 rakFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 7 RAKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 345667777766432 2456553 3333334445544555552 1224566777 689999999999976
No 97
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=22.31 E-value=52 Score=14.73 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=9.4
Q ss_pred CCCCCCCeEEEe
Q 045947 59 DYPFKPPKVAFR 70 (101)
Q Consensus 59 ~YP~~pP~v~f~ 70 (101)
.||.-++.|++.
T Consensus 9 ~yp~GA~sVrCa 20 (25)
T PF06943_consen 9 MYPRGAPSVRCA 20 (25)
T ss_pred EcCCCCCCeECC
Confidence 488888888864
No 98
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=21.63 E-value=2.4e+02 Score=18.20 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=34.6
Q ss_pred CeeEEecCCCcceeEEEEeCCCCC-CCCCcEEEEEEEcCCCCCCCCCeEEEecC
Q 045947 20 SCSAGPVADDMFHWQATIMGPSDS-PFAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (101)
Q Consensus 20 ~~~~~~~~~~~~~w~~~i~gp~~t-py~g~~~~~~i~fp~~YP~~pP~v~f~t~ 72 (101)
|..+..-++|...+ ....|.-. -|.|-.-.+.+.=...||--+|++.|.|+
T Consensus 86 g~iLA~ye~n~rDf--LfP~p~~~~~~~g~~revLM~~t~~FpGIaPklEfST~ 137 (140)
T PF14909_consen 86 GEILAYYEENTRDF--LFPEPKLTPSYPGVDREVLMKRTSGFPGIAPKLEFSTK 137 (140)
T ss_pred CcEEEEEeccccce--EcCCCCCCCCCCCCCEEEEeeccCCCCCCCceEEEEEE
Confidence 54444445555543 34444433 46677788888889999999999999875
No 99
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=21.34 E-value=2.1e+02 Score=17.58 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCCCCCeeEEecCCCcceeEEEEeCCCCCCCCCcEEEEEEEcCC
Q 045947 5 RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPP 58 (101)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~fp~ 58 (101)
...+++.+.++....|+.+...-++ ....+.+.-+.+.|..+....+.+.-|.
T Consensus 44 ~y~~~i~~~~~a~~lg~~~~~~~~~-~~~~i~~~d~~g~~~~~~~~~l~l~rp~ 96 (146)
T PF05751_consen 44 AYNQDIDRERAAEALGWKAELTIDD-NSLTIRLTDPNGAPVSGAKLTLSLYRPT 96 (146)
T ss_pred hhhhhhHHHHHHHhcCccceeeecC-CeEEEEEEcCCCCcCcCceEEEEEECCC
Confidence 3444544444444444444322222 2333444336666666666666666553
No 100
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=21.28 E-value=1.7e+02 Score=22.87 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=18.9
Q ss_pred CCCcEEEEEEEcCC-----CCCCCCCeEEEecCCcccccc
Q 045947 45 FAGGVFLVSIHFPP-----DYPFKPPKVAFRTKVFHPNIN 79 (101)
Q Consensus 45 y~g~~~~~~i~fp~-----~YP~~pP~v~f~t~i~HPnv~ 79 (101)
.+||.|.+.+.+.+ +||. -||||+-+
T Consensus 359 ~~~~~yElDLVLRnN~Tsee~P~---------GIFHPH~e 389 (493)
T PRK05270 359 RRGGKYELDLVLRNNRTSEEHPD---------GIFHPHPE 389 (493)
T ss_pred ecCCeeEEEEEeecCCCccccCC---------ccccCchh
Confidence 57899999999854 3443 57888643
No 101
>PRK00907 hypothetical protein; Provisional
Probab=21.18 E-value=39 Score=20.06 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=8.6
Q ss_pred EEEcCCCCCC
Q 045947 53 SIHFPPDYPF 62 (101)
Q Consensus 53 ~i~fp~~YP~ 62 (101)
.|+||-+||+
T Consensus 11 liEFPc~fpi 20 (92)
T PRK00907 11 GFQFPGTFEL 20 (92)
T ss_pred cEecCCCCeE
Confidence 5889999997
No 102
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=20.46 E-value=53 Score=21.08 Aligned_cols=14 Identities=57% Similarity=1.383 Sum_probs=7.9
Q ss_pred cCCCCCC----CCCeEEE
Q 045947 56 FPPDYPF----KPPKVAF 69 (101)
Q Consensus 56 fp~~YP~----~pP~v~f 69 (101)
+|.+||. .||+|+=
T Consensus 69 LP~E~PL~pGEk~P~iRR 86 (138)
T PF11819_consen 69 LPPEYPLEPGEKPPKIRR 86 (138)
T ss_pred CCCccCCCCCCCCCcccc
Confidence 4556665 4666643
Done!