Your job contains 1 sequence.
>045948
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEV
SVKKKSRKPLGRILLKGDNITLMMNTYVNSFSFSLSPPLITQTNGCSPTEFSFRSSYLLH
KLNFLLQIHSILSCTNINTLISGENEVVLACAWVTVLLACDLGYHAAYVNACCWVLPFQC
LLLF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045948
(184 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2053989 - symbol:AT2G18740 "AT2G18740" species... 413 1.3e-38 1
TAIR|locus:2118781 - symbol:AT4G30330 "AT4G30330" species... 413 1.3e-38 1
ZFIN|ZDB-GENE-040426-1112 - symbol:snrpe "small nuclear r... 317 1.9e-28 1
UNIPROTKB|P62303 - symbol:SNRPE "Small nuclear ribonucleo... 313 5.0e-28 1
UNIPROTKB|A4FUI2 - symbol:SNRPE "Small nuclear ribonucleo... 313 5.0e-28 1
UNIPROTKB|P62304 - symbol:SNRPE "Small nuclear ribonucleo... 313 5.0e-28 1
UNIPROTKB|A1XQR9 - symbol:SNRPE "Small nuclear ribonucleo... 313 5.0e-28 1
UNIPROTKB|I3LDW9 - symbol:SNRPE "Small nuclear ribonucleo... 313 5.0e-28 1
MGI|MGI:98346 - symbol:Snrpe "small nuclear ribonucleopro... 313 5.0e-28 1
RGD|2321675 - symbol:Snrpe "small nuclear ribonucleoprote... 313 5.0e-28 1
RGD|2318883 - symbol:LOC100362099 "small nuclear ribonucl... 309 1.3e-27 1
RGD|2319339 - symbol:LOC100361838 "small nuclear ribonucl... 309 1.3e-27 1
FB|FBgn0261790 - symbol:SmE "Small ribonucleoprotein part... 308 1.7e-27 1
UNIPROTKB|J9P098 - symbol:LOC100855941 "Uncharacterized p... 303 5.7e-27 1
UNIPROTKB|F1ME11 - symbol:LOC100296197 "Uncharacterized p... 301 9.4e-27 1
UNIPROTKB|E1BHK8 - symbol:SNRPE "Small nuclear ribonucleo... 297 2.5e-26 1
GENEDB_PFALCIPARUM|MAL13P1.253 - symbol:MAL13P1.253 "smal... 290 1.4e-25 1
UNIPROTKB|Q8IDJ7 - symbol:MAL13P1.253 "Small nuclear ribo... 290 1.4e-25 1
WB|WBGene00004919 - symbol:snr-6 species:6239 "Caenorhabd... 283 7.6e-25 1
UNIPROTKB|F1N150 - symbol:F1N150 "Uncharacterized protein... 270 1.8e-23 1
UNIPROTKB|J9NSG1 - symbol:J9NSG1 "Uncharacterized protein... 266 4.8e-23 1
DICTYBASE|DDB_G0302414 - symbol:snrpE "small nuclear ribo... 264 7.8e-23 1
UNIPROTKB|J9PAB3 - symbol:J9PAB3 "Uncharacterized protein... 264 7.8e-23 1
POMBASE|SPBC11G11.06c - symbol:sme1 "Sm snRNP core protei... 247 4.9e-21 1
UNIPROTKB|F1LYH0 - symbol:F1LYH0 "Uncharacterized protein... 234 1.2e-19 1
SGD|S000005685 - symbol:SME1 "Core Sm protein Sm E" speci... 227 6.5e-19 1
UNIPROTKB|G4MSI0 - symbol:MGG_01450 "Sm snRNP core protei... 226 8.3e-19 1
ASPGD|ASPL0000007577 - symbol:AN6735 species:162425 "Emer... 218 5.8e-18 1
RGD|1564726 - symbol:Zfp341 "zinc finger protein 341" spe... 219 1.8e-17 1
UNIPROTKB|A6NHK2 - symbol:SNRPE "Small nuclear ribonucleo... 188 8.8e-15 1
GENEDB_PFALCIPARUM|PF14_0411 - symbol:PF14_0411 "small nu... 124 5.3e-08 1
UNIPROTKB|Q8IL38 - symbol:PF14_0411 "Small nuclear ribonu... 124 5.3e-08 1
UNIPROTKB|Q2HJH0 - symbol:LSM5 "U6 snRNA-associated Sm-li... 112 1.0e-06 1
UNIPROTKB|Q9Y4Y9 - symbol:LSM5 "U6 snRNA-associated Sm-li... 112 1.0e-06 1
MGI|MGI:1913623 - symbol:Lsm5 "LSM5 homolog, U6 small nuc... 112 1.0e-06 1
ZFIN|ZDB-GENE-070822-23 - symbol:zgc:171959 "zgc:171959" ... 110 1.7e-06 1
ASPGD|ASPL0000026389 - symbol:AN5679 species:162425 "Emer... 109 2.2e-06 1
UNIPROTKB|G4MRX5 - symbol:MGG_02462 "U6 snRNA-associated ... 109 2.2e-06 1
WB|WBGene00003079 - symbol:lsm-5 species:6239 "Caenorhabd... 109 2.2e-06 1
UNIPROTKB|O18694 - symbol:lsm-5 "Protein LSM-5" species:6... 109 2.2e-06 1
TAIR|locus:2156589 - symbol:SAD1 "SUPERSENSITIVE TO ABA A... 108 2.9e-06 1
FB|FBgn0035675 - symbol:CG6610 species:7227 "Drosophila m... 100 2.7e-05 1
SGD|S000000948 - symbol:LSM5 "Lsm (Like Sm) protein" spec... 96 7.9e-05 1
DICTYBASE|DDB_G0268716 - symbol:lsm5 "putative U6 small n... 91 0.00030 1
GENEDB_PFALCIPARUM|MAL8P1.48 - symbol:MAL8P1.48 "small nu... 89 0.00052 1
>TAIR|locus:2053989 [details] [associations]
symbol:AT2G18740 "AT2G18740" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003676 GO:GO:0030529
EMBL:AC005724 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:PPINCIY
ProtClustDB:CLSN2683057 EMBL:AY086369 EMBL:BT005662 EMBL:AK118809
IPI:IPI00523358 PIR:A84568 RefSeq:NP_179464.1 UniGene:At.39949
ProteinModelPortal:Q9ZV45 SMR:Q9ZV45 IntAct:Q9ZV45 STRING:Q9ZV45
PRIDE:Q9ZV45 EnsemblPlants:AT2G18740.1 GeneID:816389
KEGG:ath:AT2G18740 TAIR:At2g18740 InParanoid:Q9ZV45
PhylomeDB:Q9ZV45 ArrayExpress:Q9ZV45 Genevestigator:Q9ZV45
Uniprot:Q9ZV45
Length = 88
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 82/86 (95%), Positives = 84/86 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLDEAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 61 SVKKKSRKPLGRILLKGDNITLMMNT 86
S+KK +RKPLGRILLKGDNITLMMNT
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNT 86
>TAIR|locus:2118781 [details] [associations]
symbol:AT4G30330 "AT4G30330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=RCA] [GO:0016925 "protein sumoylation" evidence=RCA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O26745 eggNOG:COG1958 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:AY087756
EMBL:BT024534 EMBL:AK175112 EMBL:AK175313 EMBL:AK176788
IPI:IPI00542865 RefSeq:NP_567844.1 UniGene:At.31841
ProteinModelPortal:Q8LAK5 SMR:Q8LAK5 IntAct:Q8LAK5 STRING:Q8LAK5
PaxDb:Q8LAK5 PRIDE:Q8LAK5 EnsemblPlants:AT4G30330.1 GeneID:829156
KEGG:ath:AT4G30330 TAIR:At4g30330 InParanoid:Q8LAK5
PhylomeDB:Q8LAK5 ProtClustDB:CLSN2683057 Genevestigator:Q8LAK5
Uniprot:Q8LAK5
Length = 88
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLDEAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 61 SVKKKSRKPLGRILLKGDNITLMMN 85
S+KKK+RKPLGRILLKGDNITLMMN
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMN 85
>ZFIN|ZDB-GENE-040426-1112 [details] [associations]
symbol:snrpe "small nuclear ribonucleoprotein
polypeptide E" species:7955 "Danio rerio" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040426-1112 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 CTD:6635 HOVERGEN:HBG003229
OrthoDB:EOG4DBTGC PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:BC049062 IPI:IPI00507764
RefSeq:NP_957298.1 UniGene:Dr.117027 ProteinModelPortal:Q7ZUG0
STRING:Q7ZUG0 PRIDE:Q7ZUG0 Ensembl:ENSDART00000050296 GeneID:393979
KEGG:dre:393979 InParanoid:Q7ZUG0 NextBio:20814949 Bgee:Q7ZUG0
Uniprot:Q7ZUG0
Length = 92
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 58/81 (71%), Positives = 74/81 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RI +WL+EQ ++RIEG IIGFDEYMNLVLD+AEEV +K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
K+RKPLGRI+LKGDNITL+ +
Sbjct: 69 KNRKPLGRIMLKGDNITLLQS 89
>UNIPROTKB|P62303 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9031 "Gallus gallus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65702 EMBL:L19064 IPI:IPI00587414 RefSeq:NP_990581.1
UniGene:Gga.23395 ProteinModelPortal:P62303 SMR:P62303
MINT:MINT-124835 STRING:P62303 PRIDE:P62303
Ensembl:ENSGALT00000000190 GeneID:396180 KEGG:gga:396180
InParanoid:P62303 NextBio:20816234 Uniprot:P62303
Length = 92
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>UNIPROTKB|A4FUI2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 EMBL:BC114915
IPI:IPI00845188 RefSeq:NP_001076928.1 UniGene:Bt.36560
ProteinModelPortal:A4FUI2 SMR:A4FUI2 STRING:A4FUI2 PRIDE:A4FUI2
GeneID:531493 KEGG:bta:531493 CTD:6635 HOVERGEN:HBG003229
InParanoid:A4FUI2 OrthoDB:EOG4DBTGC NextBio:20875471
PANTHER:PTHR11193 Uniprot:A4FUI2
Length = 92
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>UNIPROTKB|P62304 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471067 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW
PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1
PDBsum:3PGW CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 OMA:VQIWLYE EMBL:M37716 EMBL:M15919 EMBL:X12466
EMBL:AK312130 EMBL:BC002639 EMBL:BC090951 EMBL:M21258 EMBL:M21253
IPI:IPI00029266 PIR:A32127 RefSeq:NP_003085.1 UniGene:Hs.334612
UniGene:Hs.654418 ProteinModelPortal:P62304 SMR:P62304
DIP:DIP-31220N IntAct:P62304 MINT:MINT-225773 STRING:P62304
PhosphoSite:P62304 DMDM:61237380 PaxDb:P62304 PRIDE:P62304
DNASU:6635 Ensembl:ENST00000414487 GeneID:6635 KEGG:hsa:6635
UCSC:uc001hai.3 GeneCards:GC01P203834 HGNC:HGNC:11161 MIM:128260
neXtProt:NX_P62304 PharmGKB:PA36002 InParanoid:P62304 ChiTaRS:SNRPE
EvolutionaryTrace:P62304 GenomeRNAi:6635 NextBio:25849
ArrayExpress:P62304 Bgee:P62304 CleanEx:HS_SNRPE
Genevestigator:P62304 GermOnline:ENSG00000182004 Uniprot:P62304
Length = 92
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>UNIPROTKB|A1XQR9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 HOVERGEN:HBG003229 PANTHER:PTHR11193
EMBL:DQ629140 EMBL:DQ629141 RefSeq:NP_001090934.1 UniGene:Ssc.1070
UniGene:Ssc.75275 ProteinModelPortal:A1XQR9 GeneID:100038330
KEGG:ssc:100038330 Uniprot:A1XQR9
Length = 92
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>UNIPROTKB|I3LDW9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:FP312914
EMBL:FP565233 ProteinModelPortal:I3LDW9 SMR:I3LDW9 PRIDE:I3LDW9
Ensembl:ENSSSCT00000023057 Uniprot:I3LDW9
Length = 92
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>MGI|MGI:98346 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein E" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR027078
MGI:MGI:98346 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 CTD:6635 HOVERGEN:HBG003229
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65703 EMBL:X65704 EMBL:AK019462 EMBL:BC008262 EMBL:BC051207
EMBL:BC055765 IPI:IPI00133955 PIR:I48778 RefSeq:NP_033253.1
UniGene:Mm.249110 ProteinModelPortal:P62305 SMR:P62305
PhosphoSite:P62305 PRIDE:P62305 Ensembl:ENSMUST00000166915
GeneID:20643 KEGG:mmu:20643 UCSC:uc007cql.2 NextBio:299051
Bgee:P62305 CleanEx:MM_SNRPE Genevestigator:P62305 Uniprot:P62305
Length = 92
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>RGD|2321675 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein polypeptide E"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA;ISO]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
InterPro:IPR027078 RGD:2321675 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11097 OrthoDB:EOG4DBTGC PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE IPI:IPI00198418
RefSeq:XP_001064438.1 RefSeq:XP_002727191.1
Ensembl:ENSRNOT00000042614 GeneID:685587 KEGG:rno:685587 CTD:685587
NextBio:730016 Uniprot:D3ZSP1
Length = 92
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>RGD|2318883 [details] [associations]
symbol:LOC100362099 "small nuclear ribonucleoprotein polypeptide
E-like" species:10116 "Rattus norvegicus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR027078 RGD:2318883
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:PPINCIY
IPI:IPI00368169 RefSeq:XP_002728814.1 RefSeq:XP_003753347.1
Ensembl:ENSRNOT00000040164 GeneID:100362099 KEGG:rno:100362099
UCSC:RGD:2318883 Uniprot:D4A8M5
Length = 92
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 57/81 (70%), Positives = 73/81 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ +++IEG IIGFDEYMNLVLD+AEE+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>RGD|2319339 [details] [associations]
symbol:LOC100361838 "small nuclear ribonucleoprotein E-like"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 RGD:2319339 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 OrthoDB:EOG4DBTGC PANTHER:PTHR11193 OMA:INIIFRY
IPI:IPI00363837 RefSeq:XP_001065908.1 Ensembl:ENSRNOT00000043934
GeneID:360844 KEGG:rno:360844 CTD:360844 NextBio:674328
Uniprot:D4AAS3
Length = 92
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 57/81 (70%), Positives = 73/81 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RI+G IIGFDEYMNLVLD+AEE+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>FB|FBgn0261790 [details] [associations]
symbol:SmE "Small ribonucleoprotein particle protein SmE"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:BT003597
RefSeq:NP_609162.1 UniGene:Dm.33848 ProteinModelPortal:Q9VLV5
SMR:Q9VLV5 DIP:DIP-18284N IntAct:Q9VLV5 MINT:MINT-342402
STRING:Q9VLV5 PaxDb:Q9VLV5 PRIDE:Q9VLV5 EnsemblMetazoa:FBtr0079560
GeneID:34080 KEGG:dme:Dmel_CG18591 UCSC:CG18591-RA CTD:34080
FlyBase:FBgn0261790 InParanoid:Q9VLV5 OrthoDB:EOG4R7STC
PhylomeDB:Q9VLV5 GenomeRNAi:34080 NextBio:786757 Bgee:Q9VLV5
GermOnline:CG18591 Uniprot:Q9VLV5
Length = 94
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 56/81 (69%), Positives = 71/81 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++R+Q+WL+E LRIEG I+GFDEYMNLVLD+AEEV VK
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKT 67
Query: 65 KSRKPLGRILLKGDNITLMMN 85
+ R+ LGRI+LKGDNITL+ N
Sbjct: 68 RQRRNLGRIMLKGDNITLIQN 88
>UNIPROTKB|J9P098 [details] [associations]
symbol:LOC100855941 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
OMA:VQIWLYE EMBL:AAEX03000616 Ensembl:ENSCAFT00000003298
Uniprot:J9P098
Length = 92
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 56/81 (69%), Positives = 73/81 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYM+LVLD+A+E+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMSLVLDDAKEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>UNIPROTKB|F1ME11 [details] [associations]
symbol:LOC100296197 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:DAAA02072295
IPI:IPI00905250 Ensembl:ENSBTAT00000057036 Uniprot:F1ME11
Length = 91
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 56/81 (69%), Positives = 71/81 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++ IQ+WL+EQ ++RIEG IIGFDEY NLVLD+AEE+ K
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKT 67
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 68 KSRKQLGRIMLKGDNITLIQS 88
>UNIPROTKB|E1BHK8 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 EMBL:DAAA02049203 IPI:IPI00690390
Ensembl:ENSBTAT00000022848 OMA:PPINCIY NextBio:20929647
Uniprot:E1BHK8
Length = 92
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 55/81 (67%), Positives = 71/81 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQ+++RI++WL+EQ ++R EG IIGFDE MNLVLD+AEE+ K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIRVWLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89
>GENEDB_PFALCIPARUM|MAL13P1.253 [details] [associations]
symbol:MAL13P1.253 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0006396
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844509 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE
RefSeq:XP_001350215.1 ProteinModelPortal:Q8IDJ7
EnsemblProtists:MAL13P1.253:mRNA GeneID:813814 KEGG:pfa:MAL13P1.253
EuPathDB:PlasmoDB:PF3D7_1350200 ProtClustDB:PTZ00138 Uniprot:Q8IDJ7
Length = 93
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 55/86 (63%), Positives = 73/86 (84%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAE 58
MA+T K+Q+IMTQPIN IFRF +K +QIWL+++ D+RIEG I+GFDEYMN+VLD+ +
Sbjct: 1 MATTNKKLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDMRIEGIILGFDEYMNMVLDQTK 60
Query: 59 EVSVKKKSRKPLGRILLKGDNITLMM 84
E+SVKK ++K LG+ILLKGD ITL+M
Sbjct: 61 EISVKKNTKKELGKILLKGDTITLIM 86
>UNIPROTKB|Q8IDJ7 [details] [associations]
symbol:MAL13P1.253 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0006396 "RNA processing" evidence=ISS] InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0006396 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL844509 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11097 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE RefSeq:XP_001350215.1
ProteinModelPortal:Q8IDJ7 EnsemblProtists:MAL13P1.253:mRNA
GeneID:813814 KEGG:pfa:MAL13P1.253 EuPathDB:PlasmoDB:PF3D7_1350200
ProtClustDB:PTZ00138 Uniprot:Q8IDJ7
Length = 93
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 55/86 (63%), Positives = 73/86 (84%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAE 58
MA+T K+Q+IMTQPIN IFRF +K +QIWL+++ D+RIEG I+GFDEYMN+VLD+ +
Sbjct: 1 MATTNKKLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDMRIEGIILGFDEYMNMVLDQTK 60
Query: 59 EVSVKKKSRKPLGRILLKGDNITLMM 84
E+SVKK ++K LG+ILLKGD ITL+M
Sbjct: 61 EISVKKNTKKELGKILLKGDTITLIM 86
>WB|WBGene00004919 [details] [associations]
symbol:snr-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0032940
"secretion by cell" evidence=IMP] [GO:0018996 "molting cycle,
collagen and cuticulin-based cuticle" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006997 "nucleus organization" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0018996 GO:GO:0006397 GO:GO:0040011
GO:GO:0003723 GO:GO:0007281 EMBL:Z98866 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006997 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PANTHER:PTHR11193 PIR:T27041 RefSeq:NP_499620.1
UniGene:Cel.9740 ProteinModelPortal:Q9XTU6 SMR:Q9XTU6
DIP:DIP-24866N IntAct:Q9XTU6 MINT:MINT-1060547 STRING:Q9XTU6
PaxDb:Q9XTU6 EnsemblMetazoa:Y49E10.15 GeneID:176668
KEGG:cel:CELE_Y49E10.15 UCSC:Y49E10.15 CTD:176668
WormBase:Y49E10.15 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 InParanoid:Q9XTU6 OMA:VQIWLYE NextBio:893536
Uniprot:Q9XTU6
Length = 90
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 51/83 (61%), Positives = 69/83 (83%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEV 60
M++ K+ ++M QP+NLIFR+LQ++ R+QIWL+E R+EG IIGFDE+MN+V DEAEEV
Sbjct: 1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 61 SVKKKSRKPLGRILLKGDNITLM 83
++K K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>UNIPROTKB|F1N150 [details] [associations]
symbol:F1N150 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:DAAA02057271
IPI:IPI00826986 Ensembl:ENSBTAT00000011044 OMA:IFRCLQN
Uniprot:F1N150
Length = 92
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 52/80 (65%), Positives = 66/80 (82%)
Query: 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKK 65
VQ+ QPINLIFR LQ+++RIQ+WL+EQ ++ EG IGFDEYMNLVLD+AE++ K K
Sbjct: 10 VQKGQVQPINLIFRCLQNRSRIQVWLYEQVNMWTEGCTIGFDEYMNLVLDDAEDIHSKTK 69
Query: 66 SRKPLGRILLKGDNITLMMN 85
SRK LGRI+LKGDNITL+ +
Sbjct: 70 SRKQLGRIMLKGDNITLLQS 89
>UNIPROTKB|J9NSG1 [details] [associations]
symbol:J9NSG1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:AAEX03005975
Ensembl:ENSCAFT00000028242 OMA:CLHRITL Uniprot:J9NSG1
Length = 92
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 51/79 (64%), Positives = 68/79 (86%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+ Q+++RIQ+WL++Q +++IEG IIGF EYM+LVLD+A+E K
Sbjct: 9 KVQKVMVQPINLIFRYWQNRSRIQMWLYKQVNMQIEGCIIGFVEYMDLVLDDAKEFHSKT 68
Query: 65 KSRKPLGRILLKGDNITLM 83
KSRK LG I+LKGDNITL+
Sbjct: 69 KSRKQLGWIMLKGDNITLL 87
>DICTYBASE|DDB_G0302414 [details] [associations]
symbol:snrpE "small nuclear ribonucleoprotein E"
species:44689 "Dictyostelium discoideum" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR027078
dictyBase:DDB_G0302414 INTERPRO:IPR001163 GenomeReviews:CM000154_GR
GO:GO:0003676 EMBL:AAFI02000109 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 GO:GO:0005685 KO:K11097 PANTHER:PTHR11193 OMA:VQIWLYE
RefSeq:XP_002649120.1 EnsemblProtists:DDB0302415 GeneID:8626537
KEGG:ddi:DDB_G0302414 Uniprot:C7G054
Length = 92
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 50/84 (59%), Positives = 66/84 (78%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEV 60
M+ + +M +PI LIF+FL K +QI LFE D+RI+G IIG DEYMNLVLD A E+
Sbjct: 1 MSRHHAKSVMIKPITLIFKFLTQKTEVQIMLFENTDIRIQGVIIGLDEYMNLVLDNASEL 60
Query: 61 SVKKKSRKPLGRILLKGDNITLMM 84
S+KKK++KPLG+ILLKGDNI+L++
Sbjct: 61 SIKKKTKKPLGQILLKGDNISLVL 84
>UNIPROTKB|J9PAB3 [details] [associations]
symbol:J9PAB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:AAEX03005679
Ensembl:ENSCAFT00000021768 OMA:INIIFRY Uniprot:J9PAB3
Length = 91
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 51/81 (62%), Positives = 68/81 (83%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
K+Q++M Q IN+IFR+LQ+++RIQ+WL+E ++RIEG IIGFDEYMNLVLD+A E+ K
Sbjct: 9 KLQKVMVQSINIIFRYLQNRSRIQVWLYEPVNMRIEGCIIGFDEYMNLVLDDAVEIHSKT 68
Query: 65 KSRKPLGRILLKGDNITLMMN 85
KSRK LG I+LKGD ITL+ +
Sbjct: 69 KSRKQLGWIMLKGD-ITLLQS 88
>POMBASE|SPBC11G11.06c [details] [associations]
symbol:sme1 "Sm snRNP core protein Sme1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR027078 PomBase:SPBC11G11.06c
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 GO:GO:0000395 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE PIR:T39333
RefSeq:NP_595724.1 ProteinModelPortal:Q9USZ3 IntAct:Q9USZ3
STRING:Q9USZ3 EnsemblFungi:SPBC11G11.06c.1 GeneID:2539607
KEGG:spo:SPBC11G11.06c OrthoDB:EOG49GPSD NextBio:20800764
Uniprot:Q9USZ3
Length = 84
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 47/81 (58%), Positives = 62/81 (76%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSV 62
S +VQ++M PIN IF+ LQ + IWLFEQ D+R++G+I GFDE+MN+VLD+A +V
Sbjct: 2 SGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDA 61
Query: 63 KKKSRKPLGRILLKGDNITLM 83
K R+ LGRILLKGDNITL+
Sbjct: 62 KNNKRE-LGRILLKGDNITLI 81
>UNIPROTKB|F1LYH0 [details] [associations]
symbol:F1LYH0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 IPI:IPI00568830 Ensembl:ENSRNOT00000049351
OMA:IAFNEYM Uniprot:F1LYH0
Length = 92
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 45/76 (59%), Positives = 62/76 (81%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
+VQ++ Q I+LIFR LQ+++RIQ+W +EQ ++RIEG II F+EYMNLVLD AEE+ K
Sbjct: 9 RVQKVPVQTISLIFRHLQNRSRIQVWPYEQVNMRIEGCIIAFNEYMNLVLDGAEEIHSKT 68
Query: 65 KSRKPLGRILLKGDNI 80
K RK LG+I+L+GD+I
Sbjct: 69 KPRKQLGQIMLQGDSI 84
>SGD|S000005685 [details] [associations]
symbol:SME1 "Core Sm protein Sm E" species:4932
"Saccharomyces cerevisiae" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;IPI] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR027078
SGD:S000005685 INTERPRO:IPR001163 GO:GO:0005737 EMBL:BK006948
GO:GO:0005682 GO:GO:0003723 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0071004 EMBL:U55020
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GO:GO:0005685 RefSeq:NP_014804.3 GeneID:854332 KEGG:sce:YOR161C
RefSeq:NP_014802.3 GeneID:854330 KEGG:sce:YOR159C KO:K11097
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 HOGENOM:HOG000223543
OMA:VQIWLYE OrthoDB:EOG49GPSD EMBL:X92449 EMBL:Z75067 EMBL:AY558029
PIR:S67047 ProteinModelPortal:Q12330 SMR:Q12330 DIP:DIP-1633N
IntAct:Q12330 MINT:MINT-396862 STRING:Q12330 PaxDb:Q12330
EnsemblFungi:YOR159C CYGD:YOR159c NextBio:976384
Genevestigator:Q12330 GermOnline:YOR159C Uniprot:Q12330
Length = 94
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 48/89 (53%), Positives = 62/89 (69%)
Query: 3 STKVQ-RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVS 61
S KV+ + M PIN IF FLQ + + IWLFEQ +RI+G+I+GFDE+MN+V+DEA E+
Sbjct: 2 SNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIP 61
Query: 62 VKKKSRK-------PLGRILLKGDNITLM 83
V K PLG+ILLKGDNITL+
Sbjct: 62 VNSADGKEDVEKGTPLGKILLKGDNITLI 90
>UNIPROTKB|G4MSI0 [details] [associations]
symbol:MGG_01450 "Sm snRNP core protein Sme1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027078
INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 RefSeq:XP_003714403.1 ProteinModelPortal:G4MSI0
EnsemblFungi:MGG_01450T0 GeneID:2679702 KEGG:mgr:MGG_01450
Uniprot:G4MSI0
Length = 95
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 45/84 (53%), Positives = 64/84 (76%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVS-VKK- 64
++I+ PIN IF+ LQS A + IWL+EQ +RIEG+I GFDE+MNLV+D+A EV + K
Sbjct: 10 RKILLPPINCIFKLLQSHATVSIWLYEQLGIRIEGKIRGFDEFMNLVIDDAIEVKQITKD 69
Query: 65 ---KSRKPLGRILLKGDNITLMMN 85
+ R+PLG+ILLKGDN++L+ +
Sbjct: 70 NTEEKRRPLGQILLKGDNVSLIQS 93
>ASPGD|ASPL0000007577 [details] [associations]
symbol:AN6735 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE EnsemblFungi:CADANIAT00007528
Uniprot:C8V1X5
Length = 94
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 42/81 (51%), Positives = 61/81 (75%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKS 66
++ + PI+ IF+ LQ ++ + IWL+EQ RIEG+I GFDE+MNLV+D+A EV + KS
Sbjct: 10 RKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATKS 69
Query: 67 ----RKPLGRILLKGDNITLM 83
R+PLG+ILLKGDN++L+
Sbjct: 70 EEEKRRPLGQILLKGDNVSLI 90
>RGD|1564726 [details] [associations]
symbol:Zfp341 "zinc finger protein 341" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] Pfam:PF00096
InterPro:IPR007087 InterPro:IPR015880 InterPro:IPR027078
PROSITE:PS50157 SMART:SM00355 RGD:1564726 INTERPRO:IPR001163
GO:GO:0008270 GO:GO:0005622 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 PANTHER:PTHR11193 GeneTree:ENSGT00390000000546
EMBL:AY539896 IPI:IPI00421412 UniGene:Rn.198660 UniGene:Rn.202389
Ensembl:ENSRNOT00000047286 UCSC:RGD:1564726 HOGENOM:HOG000203964
NextBio:640958 Genevestigator:Q6QI63 Uniprot:Q6QI63
Length = 428
Score = 219 (82.2 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 44/66 (66%), Positives = 53/66 (80%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKK 64
KVQ++M QPINLIFR+LQS +RIQ+WL EQ D +IEG IIGFDEYMNLV D+AEE+
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEEIH--S 66
Query: 65 KSRKPL 70
K+ PL
Sbjct: 67 KTNGPL 72
>UNIPROTKB|A6NHK2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AC114402
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 HGNC:HGNC:11161 ChiTaRS:SNRPE
EMBL:AC118554 IPI:IPI00647942 ProteinModelPortal:A6NHK2 SMR:A6NHK2
STRING:A6NHK2 PRIDE:A6NHK2 Ensembl:ENST00000367208
HOGENOM:HOG000293268 ArrayExpress:A6NHK2 Bgee:A6NHK2 Uniprot:A6NHK2
Length = 52
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 37/49 (75%), Positives = 43/49 (87%)
Query: 37 LRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNITLMMN 85
+RIEG IIGFDEYMNLVLD+AEE+ K KSRK LGRI+LKGDNITL+ +
Sbjct: 1 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 49
>GENEDB_PFALCIPARUM|PF14_0411 [details] [associations]
symbol:PF14_0411 "small nuclear ribonuclear
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0003676 EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12624 OMA:CIGSRIW ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547
HSSP:Q8ZYG5 RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38
SMR:Q8IL38 EnsemblProtists:PF14_0411:mRNA GeneID:811993
KEGG:pfa:PF14_0411 EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK--PL 70
P+ L+ + + SK IW+ + D I G+++GFDEY+N+VL++ E + +K +
Sbjct: 12 PLALMDKCIGSK----IWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKI 67
Query: 71 GRILLKGDNITLMM--NTYVNSFSF 93
++LL G NIT+M+ T VN + +
Sbjct: 68 KKLLLNGLNITIMVPGGTPVNYYDY 92
>UNIPROTKB|Q8IL38 [details] [associations]
symbol:PF14_0411 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003676
EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547 HSSP:Q8ZYG5
RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38 SMR:Q8IL38
EnsemblProtists:PF14_0411:mRNA GeneID:811993 KEGG:pfa:PF14_0411
EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK--PL 70
P+ L+ + + SK IW+ + D I G+++GFDEY+N+VL++ E + +K +
Sbjct: 12 PLALMDKCIGSK----IWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKI 67
Query: 71 GRILLKGDNITLMM--NTYVNSFSF 93
++LL G NIT+M+ T VN + +
Sbjct: 68 KKLLLNGLNITIMVPGGTPVNYYDY 92
>UNIPROTKB|Q2HJH0 [details] [associations]
symbol:LSM5 "U6 snRNA-associated Sm-like protein LSm5"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:BC105404 IPI:IPI00700036 RefSeq:NP_001040018.1
UniGene:Bt.43458 ProteinModelPortal:Q2HJH0 SMR:Q2HJH0 STRING:Q2HJH0
Ensembl:ENSBTAT00000003010 GeneID:615136 KEGG:bta:615136 CTD:23658
GeneTree:ENSGT00390000001455 HOVERGEN:HBG107310 InParanoid:Q2HJH0
KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX NextBio:20899463
Uniprot:Q2HJH0
Length = 91
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/85 (31%), Positives = 53/85 (62%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVS 61
A+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL++ E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 VKKKSRK--PLGRILLKGDNITLMM 84
+ + R+ L +ILL G+NIT+++
Sbjct: 59 ITPEGRRITKLDQILLNGNNITMLV 83
>UNIPROTKB|Q9Y4Y9 [details] [associations]
symbol:LSM5 "U6 snRNA-associated Sm-like protein LSm5"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238097 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043928 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 CTD:23658
HOVERGEN:HBG107310 KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX
EMBL:AF182291 EMBL:AC018641 EMBL:BC005938 EMBL:BF701546
IPI:IPI00220493 IPI:IPI00908769 RefSeq:NP_001124182.1
RefSeq:NP_001132971.1 RefSeq:NP_036454.1 UniGene:Hs.424908
ProteinModelPortal:Q9Y4Y9 SMR:Q9Y4Y9 DIP:DIP-31162N IntAct:Q9Y4Y9
STRING:Q9Y4Y9 PhosphoSite:Q9Y4Y9 DMDM:10720081 PaxDb:Q9Y4Y9
PRIDE:Q9Y4Y9 DNASU:23658 Ensembl:ENST00000409292
Ensembl:ENST00000409782 Ensembl:ENST00000409909
Ensembl:ENST00000409952 Ensembl:ENST00000410044
Ensembl:ENST00000450169 GeneID:23658 KEGG:hsa:23658 UCSC:uc003tct.2
GeneCards:GC07M032524 HGNC:HGNC:17162 HPA:HPA019054 MIM:607285
neXtProt:NX_Q9Y4Y9 PharmGKB:PA134881171 InParanoid:Q9Y4Y9
PhylomeDB:Q9Y4Y9 GenomeRNAi:23658 NextBio:46501 ArrayExpress:Q9Y4Y9
Bgee:Q9Y4Y9 CleanEx:HS_LSM5 Genevestigator:Q9Y4Y9
GermOnline:ENSG00000106355 Uniprot:Q9Y4Y9
Length = 91
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/85 (31%), Positives = 53/85 (62%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVS 61
A+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL++ E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 VKKKSRK--PLGRILLKGDNITLMM 84
+ + R+ L +ILL G+NIT+++
Sbjct: 59 ITPEGRRITKLDQILLNGNNITMLV 83
>MGI|MGI:1913623 [details] [associations]
symbol:Lsm5 "LSM5 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] MGI:MGI:1913623 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:23658 GeneTree:ENSGT00390000001455
HOVERGEN:HBG107310 KO:K12624 OMA:CIGSRIW EMBL:AK009617
EMBL:AK011218 EMBL:BC048459 EMBL:BC061085 EMBL:BC132626
EMBL:BC132628 IPI:IPI00119813 RefSeq:NP_079796.1
RefSeq:XP_003946397.1 UniGene:Mm.25642 ProteinModelPortal:P62322
SMR:P62322 IntAct:P62322 PhosphoSite:P62322 PRIDE:P62322
Ensembl:ENSMUST00000170382 GeneID:100044729 GeneID:66373
KEGG:mmu:100044729 KEGG:mmu:66373 UCSC:uc009cbj.2 NextBio:458218
Bgee:P62322 Genevestigator:P62322 GermOnline:ENSMUSG00000054264
Uniprot:P62322
Length = 91
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/85 (31%), Positives = 53/85 (62%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVS 61
A+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL++ E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 VKKKSRK--PLGRILLKGDNITLMM 84
+ + R+ L +ILL G+NIT+++
Sbjct: 59 ITPEGRRITKLDQILLNGNNITMLV 83
>ZFIN|ZDB-GENE-070822-23 [details] [associations]
symbol:zgc:171959 "zgc:171959" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-070822-23 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 GeneTree:ENSGT00390000001455 HOVERGEN:HBG107310
KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX HOGENOM:HOG000223547
EMBL:BX571950 EMBL:BC150414 IPI:IPI00609349 RefSeq:NP_001093908.1
UniGene:Dr.117231 STRING:A7E2L8 Ensembl:ENSDART00000105903
GeneID:563948 KEGG:dre:563948 NextBio:20885150 Uniprot:A7E2L8
Length = 91
Score = 110 (43.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL++ E + + R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMM 84
+ILL G+NIT+++
Sbjct: 70 DQILLNGNNITMLI 83
>ASPGD|ASPL0000026389 [details] [associations]
symbol:AN5679 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] INTERPRO:IPR001163
GO:GO:0003676 EMBL:BN001305 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223547 EnsemblFungi:CADANIAT00003386 Uniprot:C8VFR4
Length = 129
Score = 109 (43.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL++ E K L +
Sbjct: 53 PLELIDKCVGSR----IWIIMKNDKEFSGTLLGFDDYVNMVLEDVTEFDYTGAQVK-LPK 107
Query: 73 ILLKGDNITLMM 84
ILL G+NI +++
Sbjct: 108 ILLNGNNICMLI 119
>UNIPROTKB|G4MRX5 [details] [associations]
symbol:MGG_02462 "U6 snRNA-associated Sm-like protein LSm5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001231
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12624 RefSeq:XP_003709256.1
ProteinModelPortal:G4MRX5 SMR:G4MRX5 EnsemblFungi:MGG_02462T0
GeneID:2681559 KEGG:mgr:MGG_02462 Uniprot:G4MRX5
Length = 82
Score = 109 (43.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL++ E K + +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNHTK-MSK 61
Query: 73 ILLKGDNITLMM 84
ILL G+NI +++
Sbjct: 62 ILLNGNNICMLI 73
>WB|WBGene00003079 [details] [associations]
symbol:lsm-5 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] INTERPRO:IPR001163 GO:GO:0009792
GO:GO:0006915 GO:GO:0000003 GO:GO:0042127 GO:GO:0040020
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z81071 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 109 (43.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEV--SVKKKSRKPL 70
P+ LI + + SK IW+ + D I G + GFD+Y+N+VL++ E + K L
Sbjct: 14 PLELIDKCIGSK----IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKL 69
Query: 71 GRILLKGDNITLMM 84
ILL G++IT+++
Sbjct: 70 DTILLNGNHITMLV 83
>UNIPROTKB|O18694 [details] [associations]
symbol:lsm-5 "Protein LSM-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0006915 GO:GO:0000003
GO:GO:0042127 GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:Z81071 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 109 (43.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEV--SVKKKSRKPL 70
P+ LI + + SK IW+ + D I G + GFD+Y+N+VL++ E + K L
Sbjct: 14 PLELIDKCIGSK----IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKL 69
Query: 71 GRILLKGDNITLMM 84
ILL G++IT+++
Sbjct: 70 DTILLNGNHITMLV 83
>TAIR|locus:2156589 [details] [associations]
symbol:SAD1 "SUPERSENSITIVE TO ABA AND DROUGHT 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009737 EMBL:CP002688 GO:GO:0009414
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AB012242
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
UniGene:At.49146 UniGene:At.6838 HSSP:O29885 EMBL:AY034896
EMBL:BT025700 IPI:IPI00538376 RefSeq:NP_199698.1
ProteinModelPortal:Q9FKB0 SMR:Q9FKB0 STRING:Q9FKB0 PRIDE:Q9FKB0
EnsemblPlants:AT5G48870.1 GeneID:834945 KEGG:ath:AT5G48870
TAIR:At5g48870 InParanoid:Q9FKB0 PhylomeDB:Q9FKB0
ProtClustDB:CLSN2686781 Genevestigator:Q9FKB0 Uniprot:Q9FKB0
Length = 88
Score = 108 (43.1 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL++ E + + R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 71 GRILLKGDNITLMM 84
+ILL G+NI +++
Sbjct: 66 DQILLNGNNIAILV 79
>FB|FBgn0035675 [details] [associations]
symbol:CG6610 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=NAS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0005681 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW EMBL:AY113521 RefSeq:NP_648022.1 UniGene:Dm.14483
SMR:Q9VRT7 IntAct:Q9VRT7 MINT:MINT-768745 STRING:Q9VRT7
EnsemblMetazoa:FBtr0077048 EnsemblMetazoa:FBtr0332059
EnsemblMetazoa:FBtr0332060 GeneID:38693 KEGG:dme:Dmel_CG6610
UCSC:CG6610-RA FlyBase:FBgn0035675 InParanoid:Q9VRT7
OrthoDB:EOG43TXC6 GenomeRNAi:38693 NextBio:809911 Uniprot:Q9VRT7
Length = 91
Score = 100 (40.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 24/74 (32%), Positives = 45/74 (60%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK--PL 70
P+ L+ + + S RI I + K++ G ++GFD+++N++LD+ E R+ L
Sbjct: 15 PLELVDKCIGS--RIHIIMKNDKEM--VGTLLGFDDFVNMLLDDVTEYENTPDGRRITKL 70
Query: 71 GRILLKGDNITLMM 84
+ILL G+NIT+++
Sbjct: 71 DQILLNGNNITMLV 84
>SGD|S000000948 [details] [associations]
symbol:LSM5 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=IDA;TAS] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=TAS]
SGD:S000000948 INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003723
EMBL:BK006939 GO:GO:0008033 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:U18917 GO:GO:0006364
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 OrthoDB:EOG4FN7TK EMBL:AY557783 PIR:S50649
RefSeq:NP_011073.1 ProteinModelPortal:P40089 SMR:P40089
DIP:DIP-1417N IntAct:P40089 MINT:MINT-383516 STRING:P40089
PaxDb:P40089 EnsemblFungi:YER146W GeneID:856889 KEGG:sce:YER146W
CYGD:YER146w NextBio:983290 Genevestigator:P40089
GermOnline:YER146W Uniprot:P40089
Length = 93
Score = 96 (38.9 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 24/79 (30%), Positives = 48/79 (60%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEE--VSVKKKSR--K 68
P+ +I + + K I + Q + EG ++GFD+++N++L++A E + + +SR K
Sbjct: 8 PLEVIDKTINQKVLIVL----QSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEK 63
Query: 69 PL---GRILLKGDNITLMM 84
+ GR+LL G+NI +++
Sbjct: 64 VMQHHGRMLLSGNNIAILV 82
>DICTYBASE|DDB_G0268716 [details] [associations]
symbol:lsm5 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0268716
INTERPRO:IPR001163 GenomeReviews:CM000150_GR GO:GO:0005730
EMBL:AAFI02000004 GO:GO:0003723 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HSSP:Q5CXX3 KO:K12624 OMA:CIGSRIW RefSeq:XP_646895.1
ProteinModelPortal:Q55EX5 SMR:Q55EX5 STRING:Q55EX5
EnsemblProtists:DDB0233383 GeneID:8616580 KEGG:ddi:DDB_G0268716
ProtClustDB:CLSZ2431478 Uniprot:Q55EX5
Length = 97
Score = 91 (37.1 bits), Expect = 0.00030, P = 0.00030
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKP--L 70
P+ LI + + S+ IW+ + D G ++GFD Y+N+ L + E + K L
Sbjct: 18 PLELIEKCIGSR----IWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 71 GRILLKGDNITLMM 84
ILL G+++ L++
Sbjct: 74 DNILLNGNHVCLLV 87
>GENEDB_PFALCIPARUM|MAL8P1.48 [details] [associations]
symbol:MAL8P1.48 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844507 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223546 KO:K11099
OMA:DLFLNVV HSSP:O29885 RefSeq:XP_001349302.1
ProteinModelPortal:Q8IB57 EnsemblProtists:MAL8P1.48:mRNA
GeneID:2655346 KEGG:pfa:MAL8P1.48 EuPathDB:PlasmoDB:PF3D7_0822300
ProtClustDB:CLSZ2432380 Uniprot:Q8IB57
Length = 83
Score = 89 (36.4 bits), Expect = 0.00052, P = 0.00052
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKG 77
FR K R+QI+L + ++ G + G+D +MNLVLD E+ KK + +G ++++G
Sbjct: 14 FRKFMEK-RLQIYLNGNR--QVVGILRGYDTFMNLVLDNTMEI--KKDEQIDIGVVVIRG 68
Query: 78 DNIT 81
++I+
Sbjct: 69 NSIS 72
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.327 0.139 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 184 184 0.00078 110 3 11 22 0.49 31
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 602 (64 KB)
Total size of DFA: 157 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.56u 0.16s 19.72t Elapsed: 00:00:01
Total cpu time: 19.56u 0.16s 19.72t Elapsed: 00:00:01
Start: Tue May 21 04:55:16 2013 End: Tue May 21 04:55:17 2013