BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045948
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZUG0|RUXE_DANRE Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=3
SV=1
Length = 92
Score = 130 bits (326), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSV 62
KVQ++M QPINLIFR+LQ+++RI +WL+EQ ++RIEG IIGFDEYMNLVLD+AEEV +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHM 66
Query: 63 KKKSRKPLGRILLKGDNITLM 83
K K+RKPLGRI+LKGDNITL+
Sbjct: 67 KTKNRKPLGRIMLKGDNITLL 87
>sp|A1XQR9|RUXE_PIG Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3
SV=1
Length = 92
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSV 62
+ KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 KKKSRKPLGRILLKGDNITLM 83
K KSRK LGRI+LKGDNITL+
Sbjct: 67 KTKSRKQLGRIMLKGDNITLL 87
>sp|P62305|RUXE_MOUSE Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2
SV=1
Length = 92
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 72/81 (88%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSV 62
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 KKKSRKPLGRILLKGDNITLM 83
K KSRK LGRI+LKGDNITL+
Sbjct: 67 KTKSRKQLGRIMLKGDNITLL 87
>sp|P62304|RUXE_HUMAN Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1
SV=1
Length = 92
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 72/81 (88%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSV 62
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 KKKSRKPLGRILLKGDNITLM 83
K KSRK LGRI+LKGDNITL+
Sbjct: 67 KTKSRKQLGRIMLKGDNITLL 87
>sp|P62303|RUXE_CHICK Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3
SV=1
Length = 92
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 72/81 (88%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSV 62
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 KKKSRKPLGRILLKGDNITLM 83
K KSRK LGRI+LKGDNITL+
Sbjct: 67 KTKSRKQLGRIMLKGDNITLL 87
>sp|A4FUI2|RUXE_BOVIN Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3
SV=1
Length = 92
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 72/81 (88%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSV 62
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEE+
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 KKKSRKPLGRILLKGDNITLM 83
K KSRK LGRI+LKGDNITL+
Sbjct: 67 KTKSRKQLGRIMLKGDNITLL 87
>sp|Q9VLV5|RUXE_DROME Probable small nuclear ribonucleoprotein E OS=Drosophila
melanogaster GN=SmE PE=3 SV=1
Length = 94
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 72/84 (85%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVS 61
+ KVQ++M QPINLIFR+LQ+++R+Q+WL+E LRIEG I+GFDEYMNLVLD+AEEV
Sbjct: 5 GNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVY 64
Query: 62 VKKKSRKPLGRILLKGDNITLMMN 85
VK + R+ LGRI+LKGDNITL+ N
Sbjct: 65 VKTRQRRNLGRIMLKGDNITLIQN 88
>sp|A8XDT0|RUXE_CAEBR Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
briggsae GN=snr-6 PE=3 SV=1
Length = 90
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 69/83 (83%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEV 60
M+ K+Q++M QP+NLIFR+LQ++ R+QIWL+E R+EG IIGFDE+MN+V DEAEEV
Sbjct: 1 MSQRKIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 61 SVKKKSRKPLGRILLKGDNITLM 83
++K K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>sp|Q9XTU6|RUXE_CAEEL Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
elegans GN=snr-6 PE=3 SV=1
Length = 90
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 69/83 (83%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEV 60
M++ K+ ++M QP+NLIFR+LQ++ R+QIWL+E R+EG IIGFDE+MN+V DEAEEV
Sbjct: 1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 61 SVKKKSRKPLGRILLKGDNITLM 83
++K K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>sp|Q9USZ3|RUXE_SCHPO Small nuclear ribonucleoprotein E OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sme1 PE=1 SV=1
Length = 84
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSV 62
S +VQ++M PIN IF+ LQ + IWLFEQ D+R++G+I GFDE+MN+VLD+A +V
Sbjct: 2 SGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDA 61
Query: 63 KKKSRKPLGRILLKGDNITLM 83
K R+ LGRILLKGDNITL+
Sbjct: 62 KNNKRE-LGRILLKGDNITLI 81
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 62/89 (69%), Gaps = 8/89 (8%)
Query: 3 STKVQ-RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVS 61
S KV+ + M PIN IF FLQ + + IWLFEQ +RI+G+I+GFDE+MN+V+DEA E+
Sbjct: 2 SNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIP 61
Query: 62 VKKKSRK-------PLGRILLKGDNITLM 83
V K PLG+ILLKGDNITL+
Sbjct: 62 VNSADGKEDVEKGTPLGKILLKGDNITLI 90
>sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5
PE=3 SV=3
Length = 91
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL++ E + + R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMM 84
+ILL G+NIT+++
Sbjct: 70 DQILLNGNNITMLV 83
>sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5
PE=3 SV=2
Length = 91
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL++ E + + R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMM 84
+ILL G+NIT+++
Sbjct: 70 DQILLNGNNITMLV 83
>sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5
PE=1 SV=3
Length = 91
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL++ E + + R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMM 84
+ILL G+NIT+++
Sbjct: 70 DQILLNGNNITMLV 83
>sp|Q2HJH0|LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5
PE=3 SV=3
Length = 91
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL++ E + + R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMM 84
+ILL G+NIT+++
Sbjct: 70 DQILLNGNNITMLV 83
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 41 GRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNI 80
G + G+D +MNLVLD AEE+ + SRK LG I+++GD +
Sbjct: 29 GELQGYDMHMNLVLDNAEELKENEASRK-LGTIIVRGDTV 67
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 1 MASTKVQRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEE 59
M QR+ Q P++ + L S I++ + D G + FD +MNLVL++AEE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKL----KGDREFRGVLKSFDLHMNLVLNDAEE 56
Query: 60 VSVKKKSRKPLGRILLKGDNI 80
+ + +R+ LG +L++GDNI
Sbjct: 57 LEDGEVTRR-LGTVLIRGDNI 76
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLG 71
+P+++I R L + + +K GR+IG+D ++N+VL +AE V + +K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKK-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 11/79 (13%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEA-------EEVSVKKK 65
P+ +I + + K I + Q + EG ++GFD+++N++L++A E+ S +K
Sbjct: 8 PLEVIDKTINQKVLIVL----QSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEK 63
Query: 66 SRKPLGRILLKGDNITLMM 84
+ GR+LL G+NI +++
Sbjct: 64 VMQHHGRMLLSGNNIAILV 82
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 45 GFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNIT 81
G+D +MNLVLDEAEE+ + RK +G ++++GDN+
Sbjct: 33 GYDVHMNLVLDEAEELKDGEIVRK-IGGVVIRGDNVV 68
>sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB06500 PE=1 SV=1
Length = 75
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLG 71
+P+++I R L + + +K GR+IG+D ++N+VL +AE + + K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQ-DGEVVKRYG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 10 MTQPINL-IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK 68
M+ PI L R + + + + LRI+G + +D+++N++L +AEE+ + S +
Sbjct: 1 MSGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIG--ETSIR 58
Query: 69 PLGRILLKGDNITLM 83
LG L++GD++ ++
Sbjct: 59 RLGLTLVRGDSVVVI 73
>sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain
NA1) GN=TON_0644 PE=3 SV=1
Length = 78
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLG 71
+P+++I R L + + +K G++IG+D ++N+VL AE + + +K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMIQDGEVVKK-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain
MM 739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1
Length = 76
Score = 36.6 bits (83), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLG 71
+P+++I + L ++ + ++ G++IG+D ++N+VL +A+ + + +K G
Sbjct: 4 RPLDVIHKSLDK----EVLVILKRGAEYRGKLIGYDIHLNVVLADAQLIE-NGEPKKSYG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>sp|Q54HH8|SMDL_DICDI Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium
discoideum GN=DDB_G0289453 PE=3 SV=1
Length = 257
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 17/85 (20%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDEAEE----------- 59
P++L+ R L+SK++I++ + +R G II FD++MN++L + EE
Sbjct: 166 PLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKSLPST 225
Query: 60 ----VSVKKKSRKPLGRILLKGDNI 80
++ K ++ G++ +KGD +
Sbjct: 226 RNQNQPIQPKIKRYYGQLFIKGDTV 250
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLG 71
+P++++ R L+S + + L ++ R G + G+D +MNLVL +AEE+ + RK +G
Sbjct: 4 RPLDVLNRSLKSP--VIVRLKGGREFR--GTLDGYDIHMNLVLLDAEEIQNGEVVRK-VG 58
Query: 72 RILLKGDNITLM 83
++++GD + +
Sbjct: 59 SVVIRGDTVVFV 70
>sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5
OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1
Length = 97
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRK--PL 70
P+ LI + + S+ IW+ + D G ++GFD Y+N+ L + E + K L
Sbjct: 18 PLELIEKCIGSR----IWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 71 GRILLKGDNITLMM 84
ILL G+++ L++
Sbjct: 74 DNILLNGNHVCLLV 87
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNIT 81
G + G+D +MNLVLD AEE+ + K G ++++GDN+
Sbjct: 29 GELKGYDIHMNLVLDNAEELREGEVVSK-FGSVVIRGDNVV 68
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPL 70
T+P++++ L I + + + G + G+D YMN+VL A E+ + +++
Sbjct: 8 TKPMDVLKNALSRNVLIDV----KGNREYSGILEGYDVYMNVVLQNASEI-INGENKGVF 62
Query: 71 GRILLKGDNI 80
RIL++GDN+
Sbjct: 63 DRILVRGDNV 72
>sp|O42978|LSM5_SCHPO U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm5 PE=1 SV=2
Length = 80
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGR 72
P+ LI + + S +W+ + + G ++GFD+Y+N+VL + E +
Sbjct: 7 PLELIDKCIGS----NLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
Query: 73 ILLKGDNITLMM 84
+LL G+ + +++
Sbjct: 63 MLLNGNGMCMLI 74
>sp|Q8U0P4|RUXX_PYRFU Putative snRNP Sm-like protein OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1542 PE=3
SV=1
Length = 76
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLG 71
+P+++I + L + + +K G++IG+D ++N+VL AE + + +K G
Sbjct: 4 RPLDVIHKSLDK----DVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKK-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>sp|Q5JIE0|RUXX_PYRKO Putative snRNP Sm-like protein OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3
SV=1
Length = 76
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLG 71
+P+++I + L + + ++ G++IG+D ++N+VL +AE + + +K G
Sbjct: 4 RPLDVIHKSLDK----DVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDGEVVKK-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>sp|C5A1H1|RUXX_THEGJ Putative snRNP Sm-like protein OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1738 PE=3
SV=1
Length = 76
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLG 71
+P+++I R L + + ++ G++IG+D ++N+VL A+ + + K G
Sbjct: 4 RPLDVIHRSLDK----DVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYIQ-DGEVVKSYG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVVRGDNV 67
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLG 71
QP +L +++ K +I++ + + G + GFD++MNLV+D EV+ K+ +G
Sbjct: 6 QPPDL-KKYMDKKLQIKL----NANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKT--DIG 58
Query: 72 RILLKGDNI 80
++++G++I
Sbjct: 59 MVVIRGNSI 67
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNITLM 83
R+ G + GFD +MN+V+DEA E K LG +++G+++ +M
Sbjct: 26 RVSGILRGFDPFMNMVIDEAVEYQ-KDGGSVNLGMTVIRGNSVVIM 70
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNI 80
I G + GFD++MNLV+D EV+ +K+ +G ++++G+++
Sbjct: 28 IVGTLRGFDQFMNLVVDNTVEVNGNEKN--DIGMVVIRGNSV 67
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 45 GFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNI 80
G+D YMN+VL A E+ + +++ R+L++GDN+
Sbjct: 38 GYDVYMNIVLQNASEI-INGENKGVYDRVLVRGDNV 72
>sp|A8MWD9|RUXGL_HUMAN Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens
PE=2 SV=2
Length = 76
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNITLM 83
++G + GFD +MNLV+DE E++ + +K +G + ++G++I ++
Sbjct: 27 VQGILRGFDPFMNLVIDECVEMATSGQ-QKNIGMVEIRGNSIIML 70
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNITLM 83
++G + GFD +MNLV+DE E++ + +G ++++G++I ++
Sbjct: 27 VQGILRGFDPFMNLVIDECVEMATSGQQNN-IGMVVIRGNSIIML 70
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNITLM 83
++G + GFD +MNLV+DE E++ + +G ++++G++I ++
Sbjct: 27 VQGILRGFDPFMNLVIDECVEMATSGQQNN-IGMVVIRGNSIIML 70
>sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3
SV=1
Length = 76
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNITLM 83
++G + GFD +MNLV+DE E++ + +G ++++G++I ++
Sbjct: 27 VQGILRGFDPFMNLVIDECVEMATSGQQNN-IGMVVIRGNSIIML 70
>sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F OS=Caenorhabditis
elegans GN=snr-5 PE=1 SV=1
Length = 85
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 4 TKVQRIMTQPI--NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVS 61
+ VQ + +P +L +F+ K + W E K G ++ D YMNL L AEE
Sbjct: 2 SAVQPVNPKPFLNSLTGKFVVCKLK---WGMEYK-----GVLVAVDSYMNLQLAHAEEY- 52
Query: 62 VKKKSRKPLGRILLKGDNI 80
+ S+ LG IL++ +N+
Sbjct: 53 IDGNSQGNLGEILIRCNNV 71
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 8/52 (15%)
Query: 40 EGRII-----GFDEYMNLVLDEAEE---VSVKKKSRKPLGRILLKGDNITLM 83
+GR+I GFD+ +NL+LDE+ E S + + LG +++GDN+ ++
Sbjct: 19 DGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 8/52 (15%)
Query: 40 EGRII-----GFDEYMNLVLDEAEE---VSVKKKSRKPLGRILLKGDNITLM 83
+GR+I GFD+ +NL+LDE+ E S + + LG +++GDN+ ++
Sbjct: 19 DGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 8/52 (15%)
Query: 40 EGRII-----GFDEYMNLVLDEAEE---VSVKKKSRKPLGRILLKGDNITLM 83
+GR+I GFD+ +NL+LDE+ E S + + LG +++GDN+ ++
Sbjct: 19 DGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 8/52 (15%)
Query: 40 EGRII-----GFDEYMNLVLDEAEE---VSVKKKSRKPLGRILLKGDNITLM 83
+GR+I GFD+ +NL+LDE+ E S + + LG +++GDN+ ++
Sbjct: 19 DGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNIT 81
G + G+D +MNLVLD AEE+ + K ++++GDN+
Sbjct: 29 GELKGYDIHMNLVLDNAEELREGEVVSK-FSSVVIRGDNVV 68
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGRILLKGDNIT 81
G + G+D +MNLVLD AEE+ + K ++++GDN+
Sbjct: 29 GELKGYDIHMNLVLDNAEELRDGEVVSK-FSSVVIRGDNVV 68
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 39 IEGRIIGFDEYMNLVLDEAEEV-------SVKKKSRKPLGRILLKGDNITLM 83
I GR + FD++MN+V+ +AEE ++ ++ LG IL++G+ + M
Sbjct: 28 IVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGMILIRGETVVSM 79
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2
Length = 110
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSVKKKSRKPLGR 72
P++LI + ++ + I L + + +I R+ FD + N+VL+ +E+ +KK + + R
Sbjct: 30 PMSLINDAMVTRTPVIISL--RNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKNVINR 87
Query: 73 ------ILLKGDNITLMMNTYV 88
+ L+GD++ +++ T V
Sbjct: 88 ERFISKLFLRGDSVIVVLKTPV 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,026,658
Number of Sequences: 539616
Number of extensions: 2328737
Number of successful extensions: 7128
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 7068
Number of HSP's gapped (non-prelim): 90
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)