BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045950
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 7/233 (3%)
Query: 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIP-DSFRNMRLLFELDVSTNQ 147
T+ G+DL+ + G +P G L L+SN F G +P D+ MR L LD+S N+
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 148 FSGCFPSVVLCL-PSLKFLDIRFNQFEGDI-PSAVFDLK--LDALFINNNKFSSSLPKNI 203
FSG P + L SL LD+ N F G I P+ + K L L++ NN F+ +P +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 204 GX-XXXXXXXXXXXXXXXCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDV 262
IPSSL ++ + + LN L G PQ++ + + +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQELMYVKTLETLIL 473
Query: 263 GFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFF 315
FN+L G +P + N +L +++++N+L+G IP+ I RL L S N F
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 27/246 (10%)
Query: 77 YCAPAPDDPHSLTVAGIDLNHANIAGTLPEEL-GLLEDLALFHLNSNRFCGTIPDSFRNM 135
+ P P P ++ + L G +P+ L G + L L+ N F G +P F +
Sbjct: 259 FVGPIPPLPLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 136 RLLFELDVSTNQFSGCFP-SVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK--LDALFINN 192
LL L +S+N FSG P +L + LK LD+ FN+F G++P ++ +L L L +++
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 193 NKFSSSLPKNIGXXXXXXXXXXXXXXXXCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIG 252
N FS + +P+ TL E+ L N G TG P +
Sbjct: 378 NNFSGPI----------------------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 253 LLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSY 312
+++ + FN L G +P S+G++ L L + N L G IP+ + + LE +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 313 NFFCSE 318
N E
Sbjct: 476 NDLTGE 481
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 27/250 (10%)
Query: 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQF 148
T+ + L+ ++ G +P L +L L++NR G IP + L L +S N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 149 SGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDL--KLDALFINNNKFSSSLPKNIGXX 206
SG P+ + SL +LD+ N F G IP+A+F K+ A FI ++ KN G
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY--VYIKNDGMK 584
Query: 207 XXXXXXXXXXXXXXCIPSSLTKMA-----------------------GTLNEIILLNTGL 243
L +++ G++ + + L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 244 TGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLP 303
+G P++IG + + + ++G N++ G +P+ +G+++ L L+++ NKL G IP+++ L
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 304 KLENFTYSYN 313
L S N
Sbjct: 705 MLTEIDLSNN 714
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 106/228 (46%), Gaps = 23/228 (10%)
Query: 93 IDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCF 152
I L++ + G +P+ +G LE+LA+ L++N F G IP + R L LD++TN F+G
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 153 PSVVL---------CLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINN-NKFSSSLPKN 202
P+ + + +++ I+ + + + A L+ + N+ S+ P N
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 203 IGXXXXXXXXXXX----------XXXXXCIPSSLTKMAGTLNEIILLNTG---LTGCFPQ 249
I + + K G++ + +LN G ++G P
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 250 DIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPE 297
++G L + + D+ N L G +P++M + L ++++++N LSG IPE
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 25/238 (10%)
Query: 100 IAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCL 159
+ G +P+EL ++ L L+ N G IP N L + +S N+ +G P + L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 160 PSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLP------------------ 200
+L L + N F G+IP+ + D + L L +N N F+ ++P
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 201 -----KNIGXXXXXXXXXXXXXXXXCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLN 255
KN G L +++ T N + + G
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTSPTFDNNG 632
Query: 256 QVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYN 313
+ D+ +N L G +P+ +G+M L LN+ HN +SG+IP+ + L L S N
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 71 CNYT----GVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCG 126
CN T G + +P D+ S+ +D+++ ++G +P+E+G + L + +L N G
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 127 TIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPS-AVFDLKL 185
+IPD ++R L LD+S+N+ G P + L L +D+ N G IP F+
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730
Query: 186 DALFINN 192
A F+NN
Sbjct: 731 PAKFLNN 737
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 84/196 (42%), Gaps = 7/196 (3%)
Query: 113 DLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQF 172
+L ++SN F IP + L LD+S N+ SG F + LK L+I NQF
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 173 EGDIPSAVFDLKLDALFINNNKFSSSLPKNIGXX--XXXXXXXXXXXXXXCIPSSLTKMA 230
G IP L L + NKF+ +P + +P +
Sbjct: 260 VGPIPPLPLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 231 GTLNEIILLNTGLTGCFPQDIGL-LNQVTVFDVGFNNLVGPLPESMGNMK-SLEQLNVAH 288
+ + N +G P D L + + V D+ FN G LPES+ N+ SL L+++
Sbjct: 319 LLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 289 NKLSGAIPESICRLPK 304
N SG I ++C+ PK
Sbjct: 378 NNFSGPILPNLCQNPK 393
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 7/233 (3%)
Query: 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIP-DSFRNMRLLFELDVSTNQ 147
T+ G+DL+ + G +P G L L+SN F G +P D+ MR L LD+S N+
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 148 FSGCFPSVVLCL-PSLKFLDIRFNQFEGDI-PSAVFDLK--LDALFINNNKFSSSLPKNI 203
FSG P + L SL LD+ N F G I P+ + K L L++ NN F+ +P +
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 204 GX-XXXXXXXXXXXXXXXCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDV 262
IPSSL ++ + + LN L G PQ++ + + +
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQELMYVKTLETLIL 470
Query: 263 GFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFF 315
FN+L G +P + N +L +++++N+L+G IP+ I RL L S N F
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 27/246 (10%)
Query: 77 YCAPAPDDPHSLTVAGIDLNHANIAGTLPEEL-GLLEDLALFHLNSNRFCGTIPDSFRNM 135
+ P P P ++ + L G +P+ L G + L L+ N F G +P F +
Sbjct: 256 FVGPIPPLPLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 136 RLLFELDVSTNQFSGCFP-SVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK--LDALFINN 192
LL L +S+N FSG P +L + LK LD+ FN+F G++P ++ +L L L +++
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 193 NKFSSSLPKNIGXXXXXXXXXXXXXXXXCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIG 252
N FS + +P+ TL E+ L N G TG P +
Sbjct: 375 NNFSGPI----------------------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 253 LLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSY 312
+++ + FN L G +P S+G++ L L + N L G IP+ + + LE +
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 313 NFFCSE 318
N E
Sbjct: 473 NDLTGE 478
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 27/250 (10%)
Query: 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQF 148
T+ + L+ ++ G +P L +L L++NR G IP + L L +S N F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 149 SGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDL--KLDALFINNNKFSSSLPKNIGXX 206
SG P+ + SL +LD+ N F G IP+A+F K+ A FI ++ KN G
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY--VYIKNDGMK 581
Query: 207 XXXXXXXXXXXXXXCIPSSLTKMA-----------------------GTLNEIILLNTGL 243
L +++ G++ + + L
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 244 TGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLP 303
+G P++IG + + + ++G N++ G +P+ +G+++ L L+++ NKL G IP+++ L
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 304 KLENFTYSYN 313
L S N
Sbjct: 702 MLTEIDLSNN 711
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 106/228 (46%), Gaps = 23/228 (10%)
Query: 93 IDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCF 152
I L++ + G +P+ +G LE+LA+ L++N F G IP + R L LD++TN F+G
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 153 PSVVL---------CLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINN-NKFSSSLPKN 202
P+ + + +++ I+ + + + A L+ + N+ S+ P N
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 203 IGXXXXXXXXXXX----------XXXXXCIPSSLTKMAGTLNEIILLNTG---LTGCFPQ 249
I + + K G++ + +LN G ++G P
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 250 DIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPE 297
++G L + + D+ N L G +P++M + L ++++++N LSG IPE
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 25/238 (10%)
Query: 100 IAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCL 159
+ G +P+EL ++ L L+ N G IP N L + +S N+ +G P + L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 160 PSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLP------------------ 200
+L L + N F G+IP+ + D + L L +N N F+ ++P
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 201 -----KNIGXXXXXXXXXXXXXXXXCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLN 255
KN G L +++ T N + + G
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTSPTFDNNG 629
Query: 256 QVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYN 313
+ D+ +N L G +P+ +G+M L LN+ HN +SG+IP+ + L L S N
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 71 CNYT----GVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCG 126
CN T G + +P D+ S+ +D+++ ++G +P+E+G + L + +L N G
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 127 TIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPS-AVFDLKL 185
+IPD ++R L LD+S+N+ G P + L L +D+ N G IP F+
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 727
Query: 186 DALFINN 192
A F+NN
Sbjct: 728 PAKFLNN 734
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 84/196 (42%), Gaps = 7/196 (3%)
Query: 113 DLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQF 172
+L ++SN F IP + L LD+S N+ SG F + LK L+I NQF
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 173 EGDIPSAVFDLKLDALFINNNKFSSSLPKNIGXX--XXXXXXXXXXXXXXCIPSSLTKMA 230
G IP L L + NKF+ +P + +P +
Sbjct: 257 VGPIPPLPLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 231 GTLNEIILLNTGLTGCFPQDIGL-LNQVTVFDVGFNNLVGPLPESMGNMK-SLEQLNVAH 288
+ + N +G P D L + + V D+ FN G LPES+ N+ SL L+++
Sbjct: 316 LLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 289 NKLSGAIPESICRLPK 304
N SG I ++C+ PK
Sbjct: 375 NNFSGPILPNLCQNPK 390
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 31/205 (15%)
Query: 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLF-ELDVSTNQ 147
T+ +D ++ ++GTLP + L +L + NR G IPDS+ + LF + +S N+
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 148 FSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVF--DLKLDALFINNNKFSSSLPKNIGX 205
+G P L +L F+D+ N EGD S +F D + + N + L K
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGK---- 239
Query: 206 XXXXXXXXXXXXXXXCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFN 265
++ LN + L N + G PQ + L + +V FN
Sbjct: 240 ---------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 266 NLVGPLPESMGNMKSLEQLNVAHNK 290
NL G +P+ GN++ + A+NK
Sbjct: 279 NLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 10/236 (4%)
Query: 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQ 147
L + GI+ N+ G +P + L L ++ G IPD ++ L LD S N
Sbjct: 81 LYIGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 148 FSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAV--FDLKLDALFINNNKFSSSLPKNIGX 205
SG P + LP+L + N+ G IP + F ++ I+ N+ + +P
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 206 XXXXXXXXXXXXXXXCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFN 265
S L +I L L + +GL + D+ N
Sbjct: 197 LNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254
Query: 266 NLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNF-FCSEPL 320
+ G LP+ + +K L LNV+ N L G IP+ L + + Y+ N C PL
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPD 130
S + G+DL + I GTLP+ L L+ L +++ N CG IP
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 96 NHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSV 155
HA++ +P +L +L+ N+ P F ++ L EL + +NQ V
Sbjct: 30 RHASVPAGIPTNAQIL------YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83
Query: 156 VLCLPSLKFLDIRFNQFEGDIPSAVFD--LKLDALFINNNKFSSSLPKNI 203
L L LD+ NQ +PSAVFD + L LF+ NK + LP+ I
Sbjct: 84 FDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKL-TELPRGI 131
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 254 LNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYN 313
L Q+TV D+G N L + L++L + NKL+ +P I RL L + N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 314 FFCSEP 319
S P
Sbjct: 146 QLKSIP 151
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 93 IDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGT-IPDSFRNMRLLFELDVSTNQFSGC 151
+D++H + L L + + N F +PD F +R L LD+S Q
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 152 FPSVVLCLPSLKFLDIRFNQFEGDIPSAVFD--LKLDALFINNNKFSSSLPK 201
P+ L SL+ L++ NQ + +P +FD L ++++ N + S P+
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 275 MGNMKSLEQLNVAHNKL-SGAIPESICRLPKLENFTYSYN 313
+G++K+L++LNVAHN + S +PE L LE+ S N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 85 PHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVS 144
P +T +D N + +P+EL + L L L++NR SF NM L L +S
Sbjct: 30 PRDVTELYLDGNQFTL---VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 145 TNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFD 182
N+ P L SL+ L + N +P F+
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFN 123
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 116 LFHLN-SNRFCGTIPDS-FRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFE 173
L LN S F G+I F N+ L LD+S N L LP+LK L + NQ +
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 174 GDIPSAVFD--LKLDALFINNNKFSSSLPK 201
+P +FD L ++++ N + S P+
Sbjct: 385 S-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 QDIGLLNQ----VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q + LL Q +TV DV FN L ++ + L++L + N+L P + PK
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 305 LENFTYSYNFFCSEPLTCLN 324
LE + + N P LN
Sbjct: 150 LEKLSLANNQLTELPAGLLN 169
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 QDIGLLNQ----VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q + LL Q +TV DV FN L ++ + L++L + N+L P + PK
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 305 LENFTYSYNFFCSEPLTCLN 324
LE + + N P LN
Sbjct: 150 LEKLSLANNQLTELPAGLLN 169
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 QDIGLLNQ----VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q + LL Q +TV DV FN L ++ + L++L + N+L P + PK
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 305 LENFTYSYNFFCSEPLTCLN 324
LE + + N P LN
Sbjct: 150 LEKLSLANNQLTELPAGLLN 169
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 QDIGLLNQ----VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q + LL Q +TV DV FN L ++ + L++L + N+L P + PK
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 305 LENFTYSYNFFCSEPLTCLN 324
LE + + N P LN
Sbjct: 150 LEKLSLANNQLTELPAGLLN 169
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 275 MGNMKSLEQLNVAHNKL-SGAIPESICRLPKLENFTYSYN 313
+G++K+L++LNVAHN + S +PE L LE+ S N
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 93 IDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGT-IPDSFRNMRLLFELDVSTNQFSGC 151
+D++H + L L + + N F +PD F +R L LD+S Q
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 152 FPSVVLCLPSLKFLDIRFNQF 172
P+ L SL+ L++ N F
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNF 530
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 QDIGLLNQ----VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q + LL Q +TV DV FN L ++ + L++L + N+L P + PK
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 305 LENFTYSYNFFCSEPLTCLN 324
LE + + N P LN
Sbjct: 150 LEKLSLANNNLTELPAGLLN 169
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 QDIGLLNQ----VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q + LL Q +TV DV FN L ++ + L++L + N+L P + PK
Sbjct: 91 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 150
Query: 305 LENFTYSYNFFCSEPLTCLN 324
LE + + N P LN
Sbjct: 151 LEKLSLANNNLTELPAGLLN 170
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 275 MGNMKSLEQLNVAHNKL-SGAIPESICRLPKLENFTYSYN 313
+G++K+L++LNVAHN + S +PE L LE+ S N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 QDIGLLNQ----VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q + LL Q +TV DV FN L ++ + L++L + N+L P + PK
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 305 LENFTYSYNFFCSEPLTCLN 324
LE + + N P LN
Sbjct: 150 LEKLSLANNNLTELPAGLLN 169
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 QDIGLLNQ----VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q + LL Q +TV DV FN L ++ + L++L + N+L P + PK
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 305 LENFTYSYNFFCSEPLTCLN 324
LE + + N P LN
Sbjct: 150 LEKLSLANNNLTELPAGLLN 169
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 QDIGLLNQ----VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q + LL Q +TV DV FN L ++ + L++L + N+L P + PK
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 305 LENFTYSYNFFCSEPLTCLN 324
LE + + N P LN
Sbjct: 150 LEKLSLANNDLTELPAGLLN 169
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 249 QDIGLLNQ----VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q + LL Q +TV DV FN L ++ + L++L + N+L P + PK
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 305 LENFTYSYNFFCSEPLTCLN 324
LE + + N P LN
Sbjct: 150 LEKLSLANNNLTELPAGLLN 169
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 275 MGNMKSLEQLNVAHNKL-SGAIPESICRLPKLENFTYSYNFFCSEPLTCLNLK 326
+G++K+L++LNVAHN + S +PE L LE+ S N S + C +L+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLR 171
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 275 MGNMKSLEQLNVAHNKL-SGAIPESICRLPKLENFTYSYNFFCSEPLTCLNLK 326
+G++K+L++LNVAHN + S +PE L LE+ S N S + C +L+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLR 172
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 275 MGNMKSLEQLNVAHNKL-SGAIPESICRLPKLENFTYSYNFFCSEPLTCLNLK 326
+G++K+L++LNVAHN + S +PE L LE+ S N S + C +L+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLR 171
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 240 NTGLTGCFPQDIGLLNQVTVFDVGFNNL--VGPLPESMGNMKSLEQLNVAHNKLSGAIPE 297
N LT ++ G L ++ + N L + + E MKSL+QL+++ N +S +
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 298 SICRLPK-LENFTYSYNFFCSEPLTCL--NLKDKDDRQNCIPNRPLQRSAMEC 347
C K L + S N CL +K D N I + P Q +E
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEA 445
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 275 MGNMKSLEQLNVAHNKL-SGAIPESICRLPKLENFTYSYNFFCSEPLTCLNLK 326
+G++K+L++LNVAHN + S +PE L LE+ S N S + C +L+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLR 170
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 275 MGNMKSLEQLNVAHNKL-SGAIPESICRLPKLENFTYSYNFFCSEPLTCLNLK 326
+G++K+L++LNVAHN + S +PE L LE+ S N S + C +L+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLR 172
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 231 GTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVG-PLPESMGNMKSLEQLNVAHN 289
+L +++ L T L IG L + +V N + LPE N+ +LE L+++ N
Sbjct: 102 SSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Query: 290 KLSG 293
K+
Sbjct: 162 KIQS 165
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 109 GLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168
G+ + HL N+ P F ++ L L+++ NQ + V L L L +
Sbjct: 37 GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALH 96
Query: 169 FNQFEGDIPSAVFD-LK-LDALFINNNKF 195
NQ + IP VFD LK L +++ NN +
Sbjct: 97 INQLK-SIPMGVFDNLKSLTHIYLFNNPW 124
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 86 HSLTVAGIDLNHANIAGTLPEEL-GLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVS 144
H LT + + N TLP + L++L + N+ F + L EL +
Sbjct: 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 145 TNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFD--LKLDALFINNNKFS 196
NQ P V L L +L + +N+ + +P VFD L L + NN+
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK 170
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 7/161 (4%)
Query: 163 KFLDIRFNQFEGDIPSAVFD--LKLDALFINNNKFSSSLPKNI-GXXXXXXXXXXXXXXX 219
K LD++ N+ +PS F KL L++N+NK + LP I
Sbjct: 40 KKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97
Query: 220 XCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESM-GNM 278
+P + L E+ L L P+ L ++T +G+N L LP+ + +
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKL 156
Query: 279 KSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEP 319
SL++L + +N+L + +L +L+ N P
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 93 IDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCF 152
+DL ++ + L L L +LN N+ F+ ++ L L V+ N+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 153 PSVVLCLPSLKFLDIRFNQFEGDIPSAVFD--LKLDALFINNNKFSSSLPKNI 203
V L +L L + NQ + +P VFD KL L + N+ SLPK +
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNEL-QSLPKGV 152
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 13/198 (6%)
Query: 131 SFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFI 190
+N+R L L++S N+ G P L+ LD+ F P + F L L +
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQ-NLHLLRV 428
Query: 191 NN------NKFSSSLPKNIGXXXXXXXXXXXXXXXXCIPSSLTKMAGTLNEIILLNTGLT 244
N + + L + ++L +M G+L +IL + L
Sbjct: 429 LNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLL 488
Query: 245 GCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304
Q L V D+ N+L G +++ ++K L LN+A N + P + L +
Sbjct: 489 SIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQ 547
Query: 305 LENFTYSYNFFCSEPLTC 322
S+N PL C
Sbjct: 548 QSIINLSHN-----PLDC 560
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 256 QVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLS 292
Q+T DVGFN + PE + L+ LN+ HN+LS
Sbjct: 60 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 111 LEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170
L +L +L N+ F + L ELD+S NQ V L LK L + N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 171 QFEGDIPSAVFD--LKLDALFINNNKFSSSLP 200
Q + +P VFD L +++++N + + P
Sbjct: 192 QLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 256 QVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLS 292
Q+T DVGFN + PE + L+ LN+ HN+LS
Sbjct: 55 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 89/226 (39%), Gaps = 20/226 (8%)
Query: 106 EELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165
E+LG L+ L L H N +N+ L L++S N+ G P L+ L
Sbjct: 344 EKLGNLQTLDLSH-NDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 166 DIRFNQFEGDIPSAVFD-------LKLDALFIN--NNKFSSSLPKNIGXXXXXXXXXXXX 216
D+ F + + P + F L L F++ N + LP
Sbjct: 403 DLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP----VLRHLNLKGNHF 458
Query: 217 XXXXCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMG 276
++L + G+L +IL + GL Q L +++ D+ N+L +S+
Sbjct: 459 QDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLS 518
Query: 277 NMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLTC 322
++K + LN+A N ++ P + L + S+N PL C
Sbjct: 519 HLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHN-----PLDC 558
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 256 QVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLS 292
Q+T DVGFN + PE + L+ LN+ HN+LS
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 111 LEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170
L L +L++N+ F + L EL ++TNQ V L LK L + N
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 171 QFEGDIPSAVFD--LKLDALFINNNKFSSSLP 200
Q + +P VFD L +++++N + + P
Sbjct: 135 QLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 111 LEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170
L L +L N+ F + L L++STNQ V L LK L + N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 171 QFEGDIPSAVFD--LKLDALFINNNKFSS 197
Q + +P VFD +L L + N+ S
Sbjct: 111 QLQ-SLPDGVFDKLTQLKDLRLYQNQLKS 138
>pdb|3JVF|A Chain A, Crystal Structure Of An Interleukin-17 Receptor Complex
pdb|3JVF|B Chain B, Crystal Structure Of An Interleukin-17 Receptor Complex
Length = 133
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 23 PSQSIDIDIGLTIPNPRLSKAYT----ALQAWKYAITSDPNGFTS 63
P S+ +DIG+ N R+S + + W Y +T DPN + S
Sbjct: 21 PGGSMKLDIGIINENQRVSMSRNIESRSTSPWNYTVTWDPNRYPS 65
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 256 QVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESIC-RLPKLE 306
+V V D+ NN + +P+ + ++++L++LNVA N+L ++P+ + RL L+
Sbjct: 451 KVKVLDLH-NNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500
>pdb|1JPY|A Chain A, Crystal Structure Of Il-17f
pdb|1JPY|B Chain B, Crystal Structure Of Il-17f
pdb|1JPY|X Chain X, Crystal Structure Of Il-17f
pdb|1JPY|Y Chain Y, Crystal Structure Of Il-17f
Length = 137
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 23 PSQSIDIDIGLTIPNPRLSKAYT----ALQAWKYAITSDPNGFTS 63
P S+ +DIG+ N R+S + + W Y +T DPN + S
Sbjct: 25 PGGSMKLDIGIINENQRVSMSRNIESRSTSPWNYTVTWDPNRYPS 69
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 222 IPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSL 281
+PS++T + T N++ L P + +Q+ + D GFN++ PE + L
Sbjct: 23 LPSNITVLNLTHNQLRRLP-------PTNFTRYSQLAILDAGFNSISKLEPELCQILPLL 75
Query: 282 EQLNVAHNKLS 292
+ LN+ HN+LS
Sbjct: 76 KVLNLQHNELS 86
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 132 FRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDL-KLDALFI 190
N+ L L++ TNQ S + V L LK L++ NQ DI S + +L +L++LF+
Sbjct: 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQI-SDI-SVLNNLSQLNSLFL 294
Query: 191 NNNKFSSSLPKNIG 204
NNN+ + + IG
Sbjct: 295 NNNQLGNEDXEVIG 308
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQF 148
+V +DL+H + L+DL + +L N+ ++F + L L++S N
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 149 SGCFPSVVLCLPSLKFLDIRFNQ 171
+ S LP + ++D++ N
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNH 349
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 115 ALFHLNSNR--FCG----TIPDS-FRNMRLLFELDVSTNQFSGCF--PSVVLCLPSLKFL 165
LFHL R FCG + D FRN++ L LD+S NQ + PS L SLK +
Sbjct: 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG-KLNSLKSI 153
Query: 166 DIRFNQ 171
D NQ
Sbjct: 154 DFSSNQ 159
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 280 SLEQLNVAHNKLSG--AIPESICRLPKLENFTYSYNFFCSEPLTCLNLK 326
SLE+LNV++NKL A+P P+LE S+N P NLK
Sbjct: 318 SLEELNVSNNKLIELPALP------PRLERLIASFNHLAEVPELPQNLK 360
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 85 PHSLTVA--GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELD 142
P LT A +DL+ I +L +L + L S+R D+F ++ L LD
Sbjct: 21 PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80
Query: 143 VSTNQFSGCFPSVVLCLPSLKFLDIRFNQFE 173
+S N S S L SLK+L++ N ++
Sbjct: 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 111 LEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170
L +L +L N+ F + L LD+ NQ V L LK L + N
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Query: 171 QFEGDIPSAVFD 182
Q + +P VFD
Sbjct: 192 QLKS-VPDGVFD 202
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 85 PHSLTVA--GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELD 142
P LT A +DL+ I +L +L + L S+R D+F ++ L LD
Sbjct: 47 PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 106
Query: 143 VSTNQFSGCFPSVVLCLPSLKFLDIRFNQFE 173
+S N S S L SLK+L++ N ++
Sbjct: 107 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 15/160 (9%)
Query: 47 LQAWKYAITSDP--NGFTS-NWYGPDVCNYTGVYCAPAPDDPHSLTVAGIDLNHANIAGT 103
LQ+ A SD G T W D N A DD L G+ N +
Sbjct: 42 LQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLANNQL---AS 97
Query: 104 LPEELGL---LEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLP 160
LP LG+ L L +L N+ F + L EL ++TNQ L
Sbjct: 98 LP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 161 SLKFLDIRFNQFEGDIPSAVFDL--KLDALFINNNKFSSS 198
+L+ L + NQ + +P FD KL + + N+F S
Sbjct: 156 NLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 93 IDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGT-IPDSFRNMRLLFELDVSTNQFSGC 151
+D++H + L L + + N F +PD F +R L LD+S Q
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 152 FPSVVLCLPSLKFLDIRFNQF 172
P+ L SL+ L++ N F
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNF 211
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 15/160 (9%)
Query: 47 LQAWKYAITSDP--NGFTS-NWYGPDVCNYTGVYCAPAPDDPHSLTVAGIDLNHANIAGT 103
LQ+ A SD G T W D N A DD L G+ N +
Sbjct: 42 LQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGL---ANNQLAS 97
Query: 104 LPEELGL---LEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLP 160
LP LG+ L L +L N+ F + L EL ++TNQ L
Sbjct: 98 LP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 161 SLKFLDIRFNQFEGDIPSAVFDL--KLDALFINNNKFSSS 198
+L+ L + NQ + +P FD KL + + N+F S
Sbjct: 156 NLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCS 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,986,199
Number of Sequences: 62578
Number of extensions: 449825
Number of successful extensions: 956
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 186
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)