Query 045950
Match_columns 405
No_of_seqs 492 out of 4352
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-36 2.5E-41 330.0 26.2 286 41-336 28-321 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.9E-30 6.4E-35 280.0 18.0 271 87-359 307-610 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.3E-27 2.8E-32 228.2 6.7 248 89-338 79-356 (873)
4 KOG4194 Membrane glycoprotein 99.9 3.5E-28 7.5E-33 232.1 2.3 273 86-359 171-455 (873)
5 KOG0444 Cytoskeletal regulator 99.9 5.3E-26 1.1E-30 218.7 -0.1 265 86-357 76-376 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 7.3E-26 1.6E-30 217.8 -2.1 246 87-339 31-284 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 2.7E-26 5.9E-31 210.6 -5.6 257 89-356 46-310 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 3.6E-25 7.7E-30 203.3 -6.9 245 85-339 65-313 (565)
9 PRK15370 E3 ubiquitin-protein 99.8 1E-20 2.2E-25 195.4 14.0 244 88-357 178-429 (754)
10 KOG0618 Serine/threonine phosp 99.8 2.8E-22 6.2E-27 201.0 -2.0 240 86-334 239-487 (1081)
11 PRK15387 E3 ubiquitin-protein 99.8 1.7E-19 3.8E-24 185.3 16.3 236 88-358 222-460 (788)
12 PRK15370 E3 ubiquitin-protein 99.8 7.3E-20 1.6E-24 189.0 13.3 225 87-337 198-429 (754)
13 PRK15387 E3 ubiquitin-protein 99.8 1.9E-19 4E-24 185.1 16.1 233 90-356 203-435 (788)
14 KOG4237 Extracellular matrix p 99.8 1.7E-20 3.6E-25 172.4 4.7 249 87-335 66-358 (498)
15 PLN03210 Resistant to P. syrin 99.8 1.1E-18 2.4E-23 191.2 18.8 259 73-340 596-887 (1153)
16 KOG0617 Ras suppressor protein 99.8 1.1E-20 2.3E-25 155.4 -3.5 163 110-301 31-194 (264)
17 PLN03210 Resistant to P. syrin 99.8 2.1E-17 4.6E-22 181.1 19.7 241 86-337 632-908 (1153)
18 KOG0618 Serine/threonine phosp 99.7 7.9E-20 1.7E-24 183.6 -2.2 260 88-355 219-488 (1081)
19 KOG0617 Ras suppressor protein 99.7 2.7E-20 5.9E-25 153.0 -4.8 182 86-297 31-217 (264)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.5E-19 7.6E-24 169.2 1.4 245 89-334 24-318 (319)
21 cd00116 LRR_RI Leucine-rich re 99.7 3.3E-19 7.2E-24 169.4 0.5 247 92-339 2-294 (319)
22 KOG4237 Extracellular matrix p 99.7 1.6E-18 3.5E-23 159.4 -0.8 261 94-359 52-362 (498)
23 PLN03150 hypothetical protein; 99.7 8.3E-16 1.8E-20 158.0 15.2 157 36-197 366-529 (623)
24 KOG0532 Leucine-rich repeat (L 99.5 8.5E-16 1.8E-20 147.6 -1.1 181 110-300 73-254 (722)
25 KOG0532 Leucine-rich repeat (L 99.5 1.5E-15 3.2E-20 146.0 -4.3 178 134-320 73-251 (722)
26 COG4886 Leucine-rich repeat (L 99.4 2.2E-13 4.7E-18 133.6 8.0 195 92-319 97-293 (394)
27 COG4886 Leucine-rich repeat (L 99.3 2.5E-12 5.3E-17 126.1 7.3 193 116-338 97-292 (394)
28 KOG1909 Ran GTPase-activating 99.2 1.3E-12 2.7E-17 119.3 -0.8 239 88-336 30-311 (382)
29 PLN03150 hypothetical protein; 99.2 3.7E-11 8E-16 123.8 8.4 102 233-334 420-526 (623)
30 KOG3207 Beta-tubulin folding c 99.2 8.7E-12 1.9E-16 116.9 1.3 207 109-318 118-341 (505)
31 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.9E-16 110.6 1.4 128 207-341 285-417 (490)
32 PF14580 LRR_9: Leucine-rich r 99.1 4.6E-11 1E-15 102.1 4.3 119 206-330 19-147 (175)
33 KOG3207 Beta-tubulin folding c 99.1 1.7E-11 3.6E-16 115.0 1.3 205 132-339 117-342 (505)
34 KOG0531 Protein phosphatase 1, 99.1 8.3E-12 1.8E-16 122.9 -1.8 236 89-337 73-319 (414)
35 KOG1909 Ran GTPase-activating 99.1 2.6E-11 5.7E-16 110.8 0.9 210 87-316 57-311 (382)
36 KOG0531 Protein phosphatase 1, 99.1 2.7E-11 5.9E-16 119.3 0.6 236 89-336 50-290 (414)
37 KOG1259 Nischarin, modulator o 99.1 4.2E-11 9E-16 107.4 1.4 128 225-357 279-413 (490)
38 PF14580 LRR_9: Leucine-rich r 99.0 1.6E-10 3.5E-15 98.7 2.3 124 157-310 16-147 (175)
39 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.5E-14 77.0 3.3 60 256-315 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.3E-14 77.1 2.9 60 113-172 2-61 (61)
41 KOG1859 Leucine-rich repeat pr 98.7 3.4E-10 7.5E-15 112.3 -5.5 128 206-341 164-297 (1096)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.7E-08 3.7E-13 106.9 5.8 104 89-193 546-652 (889)
43 KOG1859 Leucine-rich repeat pr 98.6 4.5E-10 9.7E-15 111.5 -7.4 124 232-360 165-296 (1096)
44 KOG4658 Apoptotic ATPase [Sign 98.6 3.3E-08 7.1E-13 104.7 5.5 129 86-217 521-653 (889)
45 COG5238 RNA1 Ran GTPase-activa 98.6 6.2E-09 1.3E-13 92.4 -0.6 132 206-338 157-318 (388)
46 KOG4579 Leucine-rich repeat (L 98.4 4.9E-08 1.1E-12 78.2 -0.5 129 89-221 28-161 (177)
47 PF08263 LRRNT_2: Leucine rich 98.4 5.2E-07 1.1E-11 58.3 4.2 39 41-79 2-43 (43)
48 COG5238 RNA1 Ran GTPase-activa 98.4 4.9E-08 1.1E-12 86.8 -0.8 229 88-318 30-318 (388)
49 KOG4579 Leucine-rich repeat (L 98.2 1.8E-07 3.9E-12 75.0 -0.2 112 86-200 51-163 (177)
50 KOG2982 Uncharacterized conser 98.2 3.1E-07 6.8E-12 82.8 1.3 205 111-317 70-291 (418)
51 KOG2120 SCF ubiquitin ligase, 98.2 7.7E-08 1.7E-12 86.7 -4.3 175 137-313 186-373 (419)
52 PF12799 LRR_4: Leucine Rich r 98.1 2.2E-06 4.7E-11 55.6 3.1 36 256-292 2-37 (44)
53 KOG2120 SCF ubiquitin ligase, 98.1 8.8E-08 1.9E-12 86.3 -5.4 176 113-290 186-374 (419)
54 PF12799 LRR_4: Leucine Rich r 98.1 3.3E-06 7.2E-11 54.7 3.2 36 113-149 2-37 (44)
55 PRK15386 type III secretion pr 98.0 1.8E-05 3.9E-10 76.1 8.4 134 108-265 48-187 (426)
56 KOG2982 Uncharacterized conser 97.9 3.1E-06 6.6E-11 76.5 -0.2 226 111-338 44-292 (418)
57 KOG1644 U2-associated snRNP A' 97.7 5.3E-05 1.1E-09 65.0 5.5 97 232-331 43-148 (233)
58 PRK15386 type III secretion pr 97.7 0.00011 2.5E-09 70.7 8.5 131 88-242 52-188 (426)
59 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 5E-10 81.3 2.5 114 222-337 139-264 (699)
60 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.5E-09 62.9 5.0 103 233-339 21-129 (233)
61 KOG3665 ZYG-1-like serine/thre 96.9 0.00039 8.3E-09 72.4 1.8 85 232-318 174-265 (699)
62 KOG2739 Leucine-rich acidic nu 96.9 0.00064 1.4E-08 60.8 2.5 82 232-317 44-130 (260)
63 KOG2123 Uncharacterized conser 96.9 6.3E-05 1.4E-09 67.6 -3.8 93 232-329 20-123 (388)
64 KOG2739 Leucine-rich acidic nu 96.8 0.00082 1.8E-08 60.1 2.8 68 104-173 35-104 (260)
65 KOG2123 Uncharacterized conser 95.9 0.00036 7.9E-09 62.9 -4.6 85 89-178 20-106 (388)
66 KOG4308 LRR-containing protein 95.7 0.0002 4.4E-09 71.3 -8.2 86 232-317 205-304 (478)
67 PF13306 LRR_5: Leucine rich r 95.5 0.027 5.8E-07 45.4 5.1 79 89-170 13-91 (129)
68 PF13306 LRR_5: Leucine rich r 95.4 0.052 1.1E-06 43.6 6.4 105 106-215 6-112 (129)
69 PF00560 LRR_1: Leucine Rich R 95.3 0.007 1.5E-07 32.6 0.8 18 138-156 2-19 (22)
70 PF00560 LRR_1: Leucine Rich R 95.3 0.0072 1.6E-07 32.6 0.8 18 281-299 2-19 (22)
71 KOG0473 Leucine-rich repeat pr 95.3 0.00044 9.6E-09 60.7 -6.3 85 86-173 40-124 (326)
72 KOG4308 LRR-containing protein 95.1 0.00012 2.6E-09 72.9 -11.9 110 206-315 204-330 (478)
73 KOG0473 Leucine-rich repeat pr 93.0 0.0019 4.2E-08 56.8 -7.1 88 106-196 36-124 (326)
74 PF13504 LRR_7: Leucine rich r 93.0 0.069 1.5E-06 26.7 1.4 11 281-291 3-13 (17)
75 smart00369 LRR_TYP Leucine-ric 91.5 0.17 3.7E-06 28.2 2.1 14 160-173 2-15 (26)
76 smart00370 LRR Leucine-rich re 91.5 0.17 3.7E-06 28.2 2.1 14 160-173 2-15 (26)
77 KOG1947 Leucine rich repeat pr 88.8 0.044 9.6E-07 54.8 -3.3 15 276-290 359-373 (482)
78 smart00370 LRR Leucine-rich re 87.5 0.55 1.2E-05 26.1 2.1 14 136-149 2-15 (26)
79 smart00369 LRR_TYP Leucine-ric 87.5 0.55 1.2E-05 26.1 2.1 14 136-149 2-15 (26)
80 PF13516 LRR_6: Leucine Rich r 86.8 0.16 3.5E-06 27.7 -0.4 16 279-294 2-17 (24)
81 KOG3864 Uncharacterized conser 85.7 0.074 1.6E-06 46.1 -3.1 34 279-312 151-185 (221)
82 PF07172 GRP: Glycine rich pro 82.2 0.87 1.9E-05 34.7 1.7 23 1-23 1-23 (95)
83 KOG3864 Uncharacterized conser 80.4 0.41 8.9E-06 41.6 -0.7 81 89-169 102-185 (221)
84 smart00365 LRR_SD22 Leucine-ri 78.8 1.8 4E-05 24.2 1.9 14 136-149 2-15 (26)
85 smart00364 LRR_BAC Leucine-ric 76.6 1.6 3.5E-05 24.5 1.2 17 324-340 3-19 (26)
86 KOG1947 Leucine rich repeat pr 73.9 2.3 4.9E-05 42.4 2.4 126 185-310 190-328 (482)
87 KOG4242 Predicted myosin-I-bin 73.8 10 0.00022 37.5 6.5 38 281-318 415-455 (553)
88 smart00368 LRR_RI Leucine rich 70.3 3.7 7.9E-05 23.3 1.7 14 303-316 2-15 (28)
89 KOG3763 mRNA export factor TAP 53.3 6.9 0.00015 39.3 1.3 60 232-293 219-284 (585)
90 PF08194 DIM: DIM protein; In 53.3 15 0.00033 22.3 2.3 13 1-13 1-13 (36)
91 KOG3763 mRNA export factor TAP 50.0 9.5 0.00021 38.4 1.7 36 135-170 217-254 (585)
92 KOG4341 F-box protein containi 47.7 9.2 0.0002 37.2 1.2 84 88-171 138-227 (483)
93 PF07263 DMP1: Dentin matrix p 44.1 11 0.00024 36.9 1.1 17 1-17 1-17 (514)
94 PF11921 DUF3439: Domain of un 41.2 6.8 0.00015 30.0 -0.6 21 355-375 26-46 (122)
95 KOG4242 Predicted myosin-I-bin 40.3 29 0.00063 34.4 3.3 16 304-319 355-370 (553)
96 TIGR00864 PCC polycystin catio 36.9 20 0.00042 43.3 1.8 32 261-292 1-32 (2740)
97 KOG4341 F-box protein containi 35.4 16 0.00034 35.7 0.7 245 87-333 163-436 (483)
98 TIGR00864 PCC polycystin catio 29.4 36 0.00078 41.2 2.3 33 118-150 1-33 (2740)
99 smart00367 LRR_CC Leucine-rich 25.2 50 0.0011 18.0 1.4 11 136-146 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-36 Score=330.02 Aligned_cols=286 Identities=34% Similarity=0.533 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCccceecCCCCCCCCCCcEEEEECCCCCCcccCCccccCCCCCcEEec
Q 045950 41 SKAYTALQAWKYAITSDPNGFTSNWY-GPDVCNYTGVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHL 119 (405)
Q Consensus 41 ~~~~~al~~~~~~~~~~~~~~~~~w~-~~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 119 (405)
..|+.||++||+.+ .++.+...+|. ..++|.|.|+.|+. ..+|+.|+|++|++.+.++..|..+++|+.|+|
T Consensus 28 ~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~c~w~gv~c~~------~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~L 100 (968)
T PLN00113 28 AEELELLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNN------SSRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100 (968)
T ss_pred HHHHHHHHHHHHhC-CCCcccCCCCCCCCCCCcCcceecCC------CCcEEEEEecCCCccccCChHHhCCCCCCEEEC
Confidence 46889999999998 46777788996 56899999999973 347999999999888888888888899999999
Q ss_pred cCCCCCCccchhcc-CCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCC
Q 045950 120 NSNRFCGTIPDSFR-NMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSS 197 (405)
Q Consensus 120 s~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~ 197 (405)
++|++.+.+|..+. .+.+|++|+|++|++++.+|. ..+++|++|+|++|.+.+.+|..+..+. |++|++++|.+.+
T Consensus 101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence 99888877776644 777777777777777655553 2455566666666665555555555554 6666666655555
Q ss_pred CCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccC
Q 045950 198 SLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMG 276 (405)
Q Consensus 198 ~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 276 (405)
.+|..++. .+|++|++++|.+.+.+|..+..+. +|++|++++|++.+.+|..++.+++|++|++++|++.+.+|..++
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC-CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 55554443 3455555555555555555555554 555555555555555555555555555555555555555555555
Q ss_pred CCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCCC
Q 045950 277 NMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIP 336 (405)
Q Consensus 277 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~ 336 (405)
++++|++|++++|++.+.+|..+.++++|++|++++|.+.+.+| .+.+|+.|++++|.++
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 55555555555555554555555555555555555555544433 2334444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.9e-30 Score=280.01 Aligned_cols=271 Identities=27% Similarity=0.415 Sum_probs=192.4
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhh---------
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVL--------- 157 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--------- 157 (405)
..+++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+.+|+.|++++|++++.+|..+.
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 34566666666666666666666666666666666666666666666666666666666665555555444
Q ss_pred ---------------CCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCc
Q 045950 158 ---------------CLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNS 220 (405)
Q Consensus 158 ---------------~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 220 (405)
.+++|+.|++++|++.+.+|..+..++ |+.|++++|.+++.++..+.. .+|+.|++++|++.+
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 445555555555555545555554444 555555555555555443322 456667777777666
Q ss_pred CCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhc
Q 045950 221 CIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESIC 300 (405)
Q Consensus 221 ~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 300 (405)
.+|..+. .. +|+.|++++|++.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|++|+|++|.+++.+|..+.
T Consensus 467 ~~p~~~~-~~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 467 GLPDSFG-SK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred ecCcccc-cc-cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 6665443 23 788888888888888888888999999999999999989999999999999999999999999999999
Q ss_pred CCCCCCEEEccCCcCCCCCCC----CCCCCcccCCCCCCCCC-C--CCCCccccccccCCCCCCCC
Q 045950 301 RLPKLENFTYSYNFFCSEPLT----CLNLKDKDDRQNCIPNR-P--LQRSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 301 ~l~~L~~L~Ls~N~l~~~~~~----~~~L~~L~l~~N~l~~~-p--~~~~~~~~~~~~~np~~C~~ 359 (405)
.+++|+.|||++|++++.+|. +..|+.+++++|.+.+. | .++..+....+.+|+..|+.
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence 999999999999999987773 56789999999998863 4 23445556778899988864
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.3e-27 Score=228.19 Aligned_cols=248 Identities=20% Similarity=0.216 Sum_probs=136.4
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
..+.||+++|.+...-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.||||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3444555555555444445555555555555555555 444433333335555555555554444445555555555555
Q ss_pred ccccCCCCChhhhcc--ccceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhc---------------
Q 045950 169 FNQFEGDIPSAVFDL--KLDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMA--------------- 230 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~--~L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~--------------- 230 (405)
.|.|+ .++..-+.. ++++|+|++|+|+..-...|.. .+|..|.|++|+++...+..|.++.
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 55554 333222222 1555555555554433333322 2344444444444433333333343
Q ss_pred --------ccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCC
Q 045950 231 --------GTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRL 302 (405)
Q Consensus 231 --------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 302 (405)
.+|+.|.|..|++...-...|..+.++++|+|+.|++...--.++.+++.|+.|+|++|.|....++.+...
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 155555555555555455556666667777777777765555566677777777777777776666667667
Q ss_pred CCCCEEEccCCcCCCCCCC----CCCCCcccCCCCCCCCC
Q 045950 303 PKLENFTYSYNFFCSEPLT----CLNLKDKDDRQNCIPNR 338 (405)
Q Consensus 303 ~~L~~L~Ls~N~l~~~~~~----~~~L~~L~l~~N~l~~~ 338 (405)
++|++|||++|+|+...+. +..|+.|+|++|.|+.+
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence 7777777777777776652 35677777777777655
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3.5e-28 Score=232.09 Aligned_cols=273 Identities=21% Similarity=0.239 Sum_probs=175.6
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
...+++.|+|++|.|+....+.|..+.+|..|.|+.|+|+...+..|.+|++|+.|+|..|+|.-.---.|.+|++|+.|
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 33455555555555555555555555555555555565554444455555666666666665552223445555666666
Q ss_pred eccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCc-CCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCC
Q 045950 166 DIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNI-GNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGL 243 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 243 (405)
.|..|.|...-...|..+. +++|+|..|+++..-...+ +...|+.|++++|.|....++.+.-.. +|++|+|++|+|
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i 329 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRI 329 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc-cceeEecccccc
Confidence 6666666533334444555 7777777777765444433 445677778888877766666665554 788888888888
Q ss_pred CCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCc---hhhcCCCCCCEEEccCCcCCCCCC
Q 045950 244 TGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIP---ESICRLPKLENFTYSYNFFCSEPL 320 (405)
Q Consensus 244 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~~ 320 (405)
+...+..|..+..|+.|+|++|++...--..|..+++|++|||++|.|+..|- ..|.++++|+.|++.+|+|..++.
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence 77777777777778888888887775445567778888888888888875543 346778888888888888877664
Q ss_pred ----CCCCCCcccCCCCCCCCC-CCCCCccccccc--cCCCCCCCC
Q 045950 321 ----TCLNLKDKDDRQNCIPNR-PLQRSAMECKSF--YAHPVDCGA 359 (405)
Q Consensus 321 ----~~~~L~~L~l~~N~l~~~-p~~~~~~~~~~~--~~np~~C~~ 359 (405)
.+..|+.|||.+|.|..+ +..|..++-..+ ..-.+.||.
T Consensus 410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC 455 (873)
T ss_pred hhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence 456788999999988776 344444433333 333466763
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=5.3e-26 Score=218.74 Aligned_cols=265 Identities=23% Similarity=0.379 Sum_probs=186.3
Q ss_pred CCCcEEEEECCCCCCcc-cCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCc-hhhhCCCCCc
Q 045950 86 HSLTVAGIDLNHANIAG-TLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFP-SVVLCLPSLK 163 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~ 163 (405)
..++++.+++..|++.. -+|+.+-.+..|..|||++|+++ +.|..+..-+++-+|+||+|+|. .+| ..|.++..|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHh
Confidence 34567777777777753 36777778888888888888887 67777777788888888888887 454 4456777888
Q ss_pred EEeccccccCCCCChhhhccc-cceeecCCCCCCC-------------------------CCCCCcCC-CCcchhhcccC
Q 045950 164 FLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSS-------------------------SLPKNIGN-SPVSVLVLANN 216 (405)
Q Consensus 164 ~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~-------------------------~~~~~~~~-~~L~~L~L~~n 216 (405)
+||||+|++. .+|..+..+. |++|.|++|.+.. .+|..+.. .+|..+|++.|
T Consensus 154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 8888888887 7777777666 7888888776531 12222222 34666777777
Q ss_pred CCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcc-cC
Q 045950 217 NLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSG-AI 295 (405)
Q Consensus 217 ~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~ 295 (405)
.+. .+|+.+.++. +|+.|+|++|+|+ .+....+.+.+|+.|+|++|+++ .+|..+..+++|+.|++.+|+++- -|
T Consensus 233 ~Lp-~vPecly~l~-~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLR-NLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred CCC-cchHHHhhhh-hhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence 776 4677777776 7777777777776 33344455667777777777777 777777777777777777777653 36
Q ss_pred chhhcCCCCCCEEEccCCcCCCCCC---CCCCCCcccCCCCCCCCCCCCC---CccccccccCCCCCC
Q 045950 296 PESICRLPKLENFTYSYNFFCSEPL---TCLNLKDKDDRQNCIPNRPLQR---SAMECKSFYAHPVDC 357 (405)
Q Consensus 296 p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~~~p~~~---~~~~~~~~~~np~~C 357 (405)
|..++++.+|+++...+|.+.-.+. .|..|+.|.|+.|++..+|... +.++...+..||-.-
T Consensus 309 PSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 7777777777777777777765554 4678999999999998888654 344556677777543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=7.3e-26 Score=217.78 Aligned_cols=246 Identities=20% Similarity=0.360 Sum_probs=167.9
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCc-cCchhhhCCCCCcEE
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSG-CFPSVVLCLPSLKFL 165 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L 165 (405)
..+++-|.|...++. .+|++++.+.+|+.|.+++|++. .+-..++.++.|+.+++.+|++.. .+|..+..+..|..|
T Consensus 31 Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence 456777888777776 67888888888888888888887 455668888888888888888763 467777888899999
Q ss_pred eccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC--CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCC
Q 045950 166 DIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN--SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTG 242 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~ 242 (405)
|||+|++. +.|..+.... +-.|+|++|+|. .+|..+.. ..|-.|||++|++. .+|..+.++. .|+.|.|++|.
T Consensus 109 DLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~-~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 109 DLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLS-MLQTLKLSNNP 184 (1255)
T ss_pred ecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHh-hhhhhhcCCCh
Confidence 99999998 8888887776 888999999988 55554432 45788899999987 4777888887 88999999887
Q ss_pred CCCCCCccCCCCCCccEEEccCCCCC-CCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC-
Q 045950 243 LTGCFPQDIGLLNQVTVFDVGFNNLV-GPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL- 320 (405)
Q Consensus 243 l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~- 320 (405)
+...--..+-.+++|+.|.+++.+-+ ..+|.++..+.+|..+||+.|.+. .+|+.+.++++|+.|+||+|+|+....
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~ 263 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMT 263 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeecc
Confidence 65332223333444444444443332 234555555555555556555555 555555555555555555555554432
Q ss_pred --CCCCCCcccCCCCCCCCCC
Q 045950 321 --TCLNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 321 --~~~~L~~L~l~~N~l~~~p 339 (405)
...+|+.|+++.|+++.+|
T Consensus 264 ~~~W~~lEtLNlSrNQLt~LP 284 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQLTVLP 284 (1255)
T ss_pred HHHHhhhhhhccccchhccch
Confidence 2234555555555555544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=2.7e-26 Score=210.62 Aligned_cols=257 Identities=24% Similarity=0.340 Sum_probs=221.3
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
.+..+++++|.+. .+-+.+.++..|..|++.+|++. ..|.+++.+..++.|+.++|+++ .+|+.++.+.+|+.|+++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4667889999988 55566889999999999999999 78888999999999999999999 899999999999999999
Q ss_pred ccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcC-CCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCC
Q 045950 169 FNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIG-NSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGC 246 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 246 (405)
+|.+. .+++.++.+. ++.++..+|+++ ..|+.++ ..++..+++.+|++....|..+ .+. .|++||...|.+. .
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~-~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMK-RLKHLDCNSNLLE-T 197 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHH-HHHhcccchhhhh-c
Confidence 99998 7888887776 999999999999 4555554 4679999999999986555444 477 9999999999887 7
Q ss_pred CCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhc-CCCCCCEEEccCCcCCCCCCC---C
Q 045950 247 FPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESIC-RLPKLENFTYSYNFFCSEPLT---C 322 (405)
Q Consensus 247 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~---~ 322 (405)
+|..++.+.+|+.|+|.+|+|. .+| +|.++..|++|+++.|+|. .+|.... +++++.+|||++|++...+.. +
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clL 274 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL 274 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHh
Confidence 8899999999999999999999 788 7999999999999999998 6777665 899999999999999988764 4
Q ss_pred CCCCcccCCCCCCCCCCCCCCc--cccccccCCCCC
Q 045950 323 LNLKDKDDRQNCIPNRPLQRSA--MECKSFYAHPVD 356 (405)
Q Consensus 323 ~~L~~L~l~~N~l~~~p~~~~~--~~~~~~~~np~~ 356 (405)
.+|++||+++|.|++.|..... +....++|||+.
T Consensus 275 rsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred hhhhhhcccCCccccCCcccccceeeehhhcCCchH
Confidence 5799999999999999876554 444678999943
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=3.6e-25 Score=203.30 Aligned_cols=245 Identities=24% Similarity=0.354 Sum_probs=221.3
Q ss_pred CCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcE
Q 045950 85 PHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKF 164 (405)
Q Consensus 85 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 164 (405)
.....++.|++.+|++. ..|++++.+..++.++.++|++. .+|.++..+..|+.|+.++|.+. .+++.++.+-.|+.
T Consensus 65 ~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLED 141 (565)
T ss_pred hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhh
Confidence 35567899999999998 78889999999999999999999 89999999999999999999999 88889999999999
Q ss_pred EeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCC
Q 045950 165 LDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGL 243 (405)
Q Consensus 165 L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 243 (405)
++..+|++. .+|+.++.+. +..+++.+|++....+..+....|++||...|.+. .+|..++.+. +|..|++.+|+|
T Consensus 142 l~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~-~L~~LyL~~Nki 218 (565)
T KOG0472|consen 142 LDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLE-SLELLYLRRNKI 218 (565)
T ss_pred hhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchh-hhHHHHhhhccc
Confidence 999999999 8888888877 99999999999976666666677999999999997 5899999998 999999999999
Q ss_pred CCCCCccCCCCCCccEEEccCCCCCCCCccccC-CCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCCC
Q 045950 244 TGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMG-NMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLTC 322 (405)
Q Consensus 244 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~ 322 (405)
. .+| .|.++..|+.|+++.|+|+ .+|.... +++++.+|||.+|+++ +.|+.+..+.+|+.||+|+|.|++.++.+
T Consensus 219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCccc
Confidence 8 556 8999999999999999999 7776665 8999999999999999 89999999999999999999999999865
Q ss_pred C--CCCcccCCCCCCCCCC
Q 045950 323 L--NLKDKDDRQNCIPNRP 339 (405)
Q Consensus 323 ~--~L~~L~l~~N~l~~~p 339 (405)
. .|+.|-+.||.+..+.
T Consensus 295 gnlhL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 295 GNLHLKFLALEGNPLRTIR 313 (565)
T ss_pred ccceeeehhhcCCchHHHH
Confidence 4 5788899999887653
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1e-20 Score=195.37 Aligned_cols=244 Identities=20% Similarity=0.366 Sum_probs=186.4
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+.+.|++++++++ .+|..+. ++|+.|+|++|+|+ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 34678999998888 4666553 57999999999999 5666554 58999999999998 6676553 47999999
Q ss_pred cccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCC
Q 045950 168 RFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCF 247 (405)
Q Consensus 168 s~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 247 (405)
++|++. .+|..+. ..|++|++++|+++ .+|..+. ..|+.|++++|++++ +|..+. .+|+.|++++|++.. +
T Consensus 249 s~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp---~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 249 SINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP---SGITHLNVQSNSLTA-L 319 (754)
T ss_pred cCCccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch---hhHHHHHhcCCcccc-C
Confidence 999998 7787654 24999999999998 5666554 479999999999885 555443 278889999999884 4
Q ss_pred CccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCCC-CCCC
Q 045950 248 PQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLTC-LNLK 326 (405)
Q Consensus 248 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~L~ 326 (405)
|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+|+ .+|..+ .++|+.|++++|+|+..++.. ..|+
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~~sL~ 391 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLPAALQ 391 (754)
T ss_pred Cccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHHHHHH
Confidence 4433 368999999999998 4676654 68999999999998 677766 368999999999998776654 3688
Q ss_pred cccCCCCCCCCCCCCCCc-------cccccccCCCCCC
Q 045950 327 DKDDRQNCIPNRPLQRSA-------MECKSFYAHPVDC 357 (405)
Q Consensus 327 ~L~l~~N~l~~~p~~~~~-------~~~~~~~~np~~C 357 (405)
.|++++|+|+.+|...+. ..-..+.+||+..
T Consensus 392 ~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 392 IMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 999999999988764322 2335677888764
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=2.8e-22 Score=200.95 Aligned_cols=240 Identities=26% Similarity=0.414 Sum_probs=182.9
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
...+++.+|++.|++. .+|+.++.+.+|+.++..+|.++ .+|..+....+|++|.+.+|.+. .+|....++.+|++|
T Consensus 239 ~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 3445666666666666 34466666666777777666665 56666666666777777777666 566666667777777
Q ss_pred eccccccCCCCChhhhccc---cceeecCCCCCCCCCCCCc--CCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccC
Q 045950 166 DIRFNQFEGDIPSAVFDLK---LDALFINNNKFSSSLPKNI--GNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLN 240 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~~~~~~---L~~L~L~~N~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~ 240 (405)
+|..|+|. .+|..+.... ++.|+.+.|++. ..|..- ....|+.|++.+|.++......+..+. +|+.|+|++
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsy 392 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSY 392 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeecc
Confidence 77777776 6666554432 666666777666 333111 114488999999999988777888888 999999999
Q ss_pred CCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC
Q 045950 241 TGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL 320 (405)
Q Consensus 241 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 320 (405)
|++.......+.++..|++|+|++|+++ .+|..+..+..|++|...+|+|. ..| .+..++.|+.+|++.|+|+....
T Consensus 393 NrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence 9998776677889999999999999999 88999999999999999999998 788 78899999999999999987543
Q ss_pred ----CCCCCCcccCCCCC
Q 045950 321 ----TCLNLKDKDDRQNC 334 (405)
Q Consensus 321 ----~~~~L~~L~l~~N~ 334 (405)
..++|++||+++|.
T Consensus 470 ~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 470 PEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhCCCcccceeeccCCc
Confidence 23789999999996
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.7e-19 Score=185.35 Aligned_cols=236 Identities=23% Similarity=0.300 Sum_probs=171.3
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+++.|++.+|+++. +|. .+++|++|++++|+|+ .+|.. .++|++|++++|.++ .+|.. ..+|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEEC
Confidence 467888888888874 453 2578888888888888 45542 357888888888887 45543 256888888
Q ss_pred cccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCC
Q 045950 168 RFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCF 247 (405)
Q Consensus 168 s~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 247 (405)
++|+++ .+|... ..|++|++++|++++ +|.. ...|+.|++++|.+++ +|. +..+|++|++++|+|.+ +
T Consensus 290 s~N~Lt-~LP~~p--~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~----lp~~Lq~LdLS~N~Ls~-L 357 (788)
T PRK15387 290 FGNQLT-SLPVLP--PGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPT----LPSGLQELSVSDNQLAS-L 357 (788)
T ss_pred cCCccc-cccccc--cccceeECCCCcccc-CCCC--cccccccccccCcccc-ccc----cccccceEecCCCccCC-C
Confidence 888887 566522 238999999998884 4432 2357788888888874 443 22378999999999884 4
Q ss_pred CccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCCCCCCCc
Q 045950 248 PQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLTCLNLKD 327 (405)
Q Consensus 248 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~L~~ 327 (405)
|.. ..+|+.|++++|+|. .+|.. ..+|+.|++++|+|+ .+|.. .++|+.|++++|+|++++....+|+.
T Consensus 358 P~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssIP~l~~~L~~ 426 (788)
T PRK15387 358 PTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSLPMLPSGLLS 426 (788)
T ss_pred CCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCCCcchhhhhh
Confidence 432 356788889999888 46653 357889999999998 46653 36788999999999886655567888
Q ss_pred ccCCCCCCCCCCCCC---CccccccccCCCCCCC
Q 045950 328 KDDRQNCIPNRPLQR---SAMECKSFYAHPVDCG 358 (405)
Q Consensus 328 L~l~~N~l~~~p~~~---~~~~~~~~~~np~~C~ 358 (405)
|++++|+|+.+|..+ ..+....+.+|++...
T Consensus 427 L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 427 LSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 999999999888643 3444567788887754
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=7.3e-20 Score=189.03 Aligned_cols=225 Identities=23% Similarity=0.374 Sum_probs=182.3
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|+|++|+++ .+|..+. .+|+.|++++|+++ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|+
T Consensus 198 p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 198 PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 357999999999999 5666554 58999999999999 5676554 47999999999999 7787664 5899999
Q ss_pred ccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCC
Q 045950 167 IRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGC 246 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 246 (405)
+++|++. .+|..+. ..|++|++++|+++. +|..+. ..|+.|++++|.+.. +|..+. .+|+.|++++|.+++
T Consensus 269 Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~---~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 269 LFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLTA-LPETLP---PGLKTLEAGENALTS- 339 (754)
T ss_pred CcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCcccc-CCcccc---ccceeccccCCcccc-
Confidence 9999998 6787654 249999999999984 555443 469999999999985 555443 389999999999985
Q ss_pred CCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCC-----
Q 045950 247 FPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLT----- 321 (405)
Q Consensus 247 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~----- 321 (405)
+|..+ .++|+.|++++|+|. .+|..+. ++|+.|+|++|+|+ .+|..+. ..|+.|++++|+|+..+..
T Consensus 340 LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~ 411 (754)
T PRK15370 340 LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFR 411 (754)
T ss_pred CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHh
Confidence 56555 378999999999998 6777663 68999999999999 6777664 4799999999999976532
Q ss_pred --CCCCCcccCCCCCCCC
Q 045950 322 --CLNLKDKDDRQNCIPN 337 (405)
Q Consensus 322 --~~~L~~L~l~~N~l~~ 337 (405)
+.++..|++.+|.|+.
T Consensus 412 ~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 412 GEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred hcCCCccEEEeeCCCccH
Confidence 3567899999999874
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.9e-19 Score=185.14 Aligned_cols=233 Identities=25% Similarity=0.340 Sum_probs=184.7
Q ss_pred EEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccc
Q 045950 90 VAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRF 169 (405)
Q Consensus 90 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 169 (405)
-..|++++++++ .+|+.+. .+|+.|++.+|+|+ .+|. ..++|++|++++|+|+ .+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 456899999998 6787775 48999999999999 4664 3578999999999999 56643 46899999999
Q ss_pred cccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCc
Q 045950 170 NQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQ 249 (405)
Q Consensus 170 N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~ 249 (405)
|.+. .+|... ..|+.|++++|+++ .+|.. ..+|+.|++++|++.+ +|. +...|+.|++++|++.+ +|.
T Consensus 272 N~L~-~Lp~lp--~~L~~L~Ls~N~Lt-~LP~~--p~~L~~LdLS~N~L~~-Lp~----lp~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 272 NPLT-HLPALP--SGLCKLWIFGNQLT-SLPVL--PPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred Cchh-hhhhch--hhcCEEECcCCccc-ccccc--ccccceeECCCCcccc-CCC----CcccccccccccCcccc-ccc
Confidence 9998 666532 23899999999998 45543 2569999999999986 443 22378899999999985 453
Q ss_pred cCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCCCCCCCccc
Q 045950 250 DIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLTCLNLKDKD 329 (405)
Q Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~L~~L~ 329 (405)
. ..+|+.|+|++|+|+ .+|.. ..+|+.|++++|+|+ .+|.. ..+|+.|++++|+|++.+....+|+.|+
T Consensus 340 l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~Ld 408 (788)
T PRK15387 340 L---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVLPSELKELM 408 (788)
T ss_pred c---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCcccCCCEEE
Confidence 2 358999999999999 56653 357889999999999 57754 3579999999999998776667899999
Q ss_pred CCCCCCCCCCCCCCccccccccCCCCC
Q 045950 330 DRQNCIPNRPLQRSAMECKSFYAHPVD 356 (405)
Q Consensus 330 l~~N~l~~~p~~~~~~~~~~~~~np~~ 356 (405)
+++|.|+++|.....+....+..|.+.
T Consensus 409 LS~N~LssIP~l~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 409 VSGNRLTSLPMLPSGLLSLSVYRNQLT 435 (788)
T ss_pred ccCCcCCCCCcchhhhhhhhhccCccc
Confidence 999999999876555666666666543
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=1.7e-20 Score=172.45 Aligned_cols=249 Identities=19% Similarity=0.176 Sum_probs=182.7
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCC-CcCCccCchhhhCCCCCcEE
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVST-NQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L 165 (405)
....+.|+|..|+|+...+.+|+.+++|+.|||++|.|+.+-|++|.++.+|..|-+.+ |+|+...-..|++|.+|+.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 45678999999999988889999999999999999999999999999999998888777 99996666789999999999
Q ss_pred eccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCc-----------------------
Q 045950 166 DIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNS----------------------- 220 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~----------------------- 220 (405)
.+.-|++.-...+.+..+. +..|.+.+|.+....-..+.. ..++.+.+..|.+..
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 9999999866667777777 999999999887333324433 456677766666210
Q ss_pred CCchHHHhh----------cccCcEE---EccCCCCCCCC-CccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEe
Q 045950 221 CIPSSLTKM----------AGTLNEI---ILLNTGLTGCF-PQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNV 286 (405)
Q Consensus 221 ~~p~~l~~l----------~~~L~~L---~l~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 286 (405)
..|..+..- ...++.+ ..+.+...+.. ...|..+++|+.|+|++|+|+++-+.+|.+...+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 011111000 0011111 11122222222 245778888888888888888877888888888888888
Q ss_pred ecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCC
Q 045950 287 AHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCI 335 (405)
Q Consensus 287 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l 335 (405)
..|+|...--..|.++..|+.|+|.+|+|+...| ....|..|+|-.|.+
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 8888875555567788888888888888887766 345677777777654
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=1.1e-18 Score=191.17 Aligned_cols=259 Identities=19% Similarity=0.200 Sum_probs=165.5
Q ss_pred ccceecCCCCCCCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccC
Q 045950 73 YTGVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCF 152 (405)
Q Consensus 73 w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 152 (405)
|.+......|......+++.|++.++++. .++..+..+++|+.|+|+++...+.+|. ++.+++|++|+|++|.....+
T Consensus 596 ~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~l 673 (1153)
T PLN03210 596 WDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVEL 673 (1153)
T ss_pred ecCCCCCCCCCcCCccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcccc
Confidence 34433333444445677888888888876 5666777888888888887764445664 777888888888887665678
Q ss_pred chhhhCCCCCcEEeccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHH------
Q 045950 153 PSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSL------ 226 (405)
Q Consensus 153 p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l------ 226 (405)
|..+..+.+|++|++++|.....+|..+....|++|++++|.....+|... .+|+.|++++|.+.. +|..+
T Consensus 674 p~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~~-lP~~~~l~~L~ 750 (1153)
T PLN03210 674 PSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIEE-FPSNLRLENLD 750 (1153)
T ss_pred chhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCcccc-ccccccccccc
Confidence 888888888888888886544477765532338888887776554554332 346667777776542 33221
Q ss_pred -----------------------HhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCE
Q 045950 227 -----------------------TKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQ 283 (405)
Q Consensus 227 -----------------------~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 283 (405)
.....+|+.|++++|...+.+|..++++++|+.|+|++|..-+.+|..+ ++++|+.
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~ 829 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLES 829 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCE
Confidence 0111256666666666655666667777777777777664433556554 5667777
Q ss_pred EEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC---CCCCCCcccCCC-CCCCCCCC
Q 045950 284 LNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL---TCLNLKDKDDRQ-NCIPNRPL 340 (405)
Q Consensus 284 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~-N~l~~~p~ 340 (405)
|++++|..-..+|.. ..+|+.|+|++|.++..+. .+.+|+.|++++ |.+..++.
T Consensus 830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred EECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 777766443344432 3567777777777765543 356677777776 45666554
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-20 Score=155.37 Aligned_cols=163 Identities=23% Similarity=0.512 Sum_probs=97.5
Q ss_pred CCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-ccee
Q 045950 110 LLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDAL 188 (405)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L 188 (405)
.+.+++.|.|++|+++ .+|..+..+.+|+.|++++|+|. .+|..+..+++|++|+++-|++. .+|..|+..+ |+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3444555555555555 34444555555555555555555 45555555555555555555554 4455444444 4444
Q ss_pred ecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCC
Q 045950 189 FINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLV 268 (405)
Q Consensus 189 ~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 268 (405)
|+.+|++... .+|..|+-+. .|+.|+++.|.+. .+|..++++++|+.|.+.+|.+-
T Consensus 108 dltynnl~e~----------------------~lpgnff~m~-tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 108 DLTYNNLNEN----------------------SLPGNFFYMT-TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hccccccccc----------------------cCCcchhHHH-HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 4444444311 2344555555 6666666666665 56666777777788888777777
Q ss_pred CCCccccCCCCCCCEEEeecCcCcccCchhhcC
Q 045950 269 GPLPESMGNMKSLEQLNVAHNKLSGAIPESICR 301 (405)
Q Consensus 269 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 301 (405)
.+|..++.+..|++|.+.+|+++ .+|..++.
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 67777777788888888888877 66665544
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=2.1e-17 Score=181.12 Aligned_cols=241 Identities=18% Similarity=0.235 Sum_probs=188.3
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
...+++.|+|+++...+.+| .++.+++|+.|+|++|.....+|..+.++++|++|++++|..-..+|..+ ++++|++|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence 35689999999876555666 48889999999999987666889999999999999999875444777665 78899999
Q ss_pred eccccccCCCCChhhhccccceeecCCCCCCCCCCCCcC-------------------------------CCCcchhhcc
Q 045950 166 DIRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIG-------------------------------NSPVSVLVLA 214 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~-------------------------------~~~L~~L~L~ 214 (405)
++++|.....+|... ..|++|++++|.+. .+|..+. ..+|+.|+++
T Consensus 710 ~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 710 NLSGCSRLKSFPDIS--TNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred eCCCCCCcccccccc--CCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 999887655555431 23788888888765 3343211 1357888899
Q ss_pred cCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCccc
Q 045950 215 NNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGA 294 (405)
Q Consensus 215 ~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 294 (405)
+|...+.+|..+..+. +|+.|++++|..-+.+|..+ .+++|+.|++++|..-..+|.. ..+|+.|+|++|.|+ .
T Consensus 787 ~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 787 DIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-E 860 (1153)
T ss_pred CCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-c
Confidence 8887778999999998 99999999987656777766 7899999999998765566643 368999999999998 7
Q ss_pred CchhhcCCCCCCEEEccC-CcCCCCCC---CCCCCCcccCCCCC-CCC
Q 045950 295 IPESICRLPKLENFTYSY-NFFCSEPL---TCLNLKDKDDRQNC-IPN 337 (405)
Q Consensus 295 ~p~~l~~l~~L~~L~Ls~-N~l~~~~~---~~~~L~~L~l~~N~-l~~ 337 (405)
+|.++..+++|+.|++++ |++...+. .+.+|+.++++++. |+.
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 899999999999999998 56777654 45678888888773 443
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=7.9e-20 Score=183.59 Aligned_cols=260 Identities=21% Similarity=0.299 Sum_probs=194.6
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+++.|+.+.|.+....+. ..-.+|+++++++|+++ .+|+.+..+.+|+.|+..+|+++ .+|..+....+|+.|++
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 3566666666666632221 22357788888888888 46677788888888888888886 77777777888888888
Q ss_pred cccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC---CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCC
Q 045950 168 RFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN---SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGL 243 (405)
Q Consensus 168 s~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~---~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 243 (405)
.+|.++ .+|......+ |++|+|..|++. .+|+.+.. ..+..|..+.|.+.. .|..=......|+.|++.+|.+
T Consensus 295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcc
Confidence 888887 6666666666 888888888887 44543322 336667777777764 2211111112789999999999
Q ss_pred CCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC--C
Q 045950 244 TGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL--T 321 (405)
Q Consensus 244 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~ 321 (405)
+...-..+.+.++|+.|+|++|++.......+.++..|++|+|++|+++ .+|..+..++.|++|...+|++...+. .
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~ 450 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQ 450 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhh
Confidence 9888888899999999999999999444446788999999999999999 889999999999999999999988774 5
Q ss_pred CCCCCcccCCCCCCCCCC--CCC--CccccccccCCCC
Q 045950 322 CLNLKDKDDRQNCIPNRP--LQR--SAMECKSFYAHPV 355 (405)
Q Consensus 322 ~~~L~~L~l~~N~l~~~p--~~~--~~~~~~~~~~np~ 355 (405)
+.+|+.+|++.|+|+..- ... +.++-..+.||+.
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 678999999999998752 222 4556667888884
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2.7e-20 Score=153.02 Aligned_cols=182 Identities=24% Similarity=0.492 Sum_probs=142.0
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
...+++.|.|++|.++ .+|+.+..+.+|+.|++++|+|. .+|.+++.+++|+.|+++.|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 5668999999999999 77888999999999999999999 78999999999999999999998 999999999999999
Q ss_pred eccccccC-CCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCC
Q 045950 166 DIRFNQFE-GDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGL 243 (405)
Q Consensus 166 ~Ls~N~i~-~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 243 (405)
||++|.+. ..+|..|+.+. |+.|++++|.+. .+|..++++. +|+.|.+..|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe------------------------~lp~dvg~lt-~lqil~lrdndl 162 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE------------------------ILPPDVGKLT-NLQILSLRDNDL 162 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc------------------------cCChhhhhhc-ceeEEeeccCch
Confidence 99999986 46787777776 888888877776 3555666666 677777777766
Q ss_pred CCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCC---CCEEEeecCcCcccCch
Q 045950 244 TGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKS---LEQLNVAHNKLSGAIPE 297 (405)
Q Consensus 244 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~~p~ 297 (405)
- .+|..++.+..|+.|.+.+|+++ .+|..++++.- =+.+.+.+|.+...|.+
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 5 56677777777777777777777 66666554321 12344445544333333
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.5e-19 Score=169.21 Aligned_cols=245 Identities=21% Similarity=0.227 Sum_probs=140.8
Q ss_pred cEEEEECCCCCCccc----CCccccCCCCCcEEeccCCCCCC------ccchhccCCCCCcEEECCCCcCCccCchhhhC
Q 045950 89 TVAGIDLNHANIAGT----LPEELGLLEDLALFHLNSNRFCG------TIPDSFRNMRLLFELDVSTNQFSGCFPSVVLC 158 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 158 (405)
+++.|+++++.++.. ++..+...+.+++|+++++.+.+ .++..+..+++|++|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 477777777777432 44455666777788887777662 23445666777888888887776555555555
Q ss_pred CCC---CcEEeccccccCCC----CChhhhcc-c-cceeecCCCCCCCCCCC----Cc-CCCCcchhhcccCCCCcCC--
Q 045950 159 LPS---LKFLDIRFNQFEGD----IPSAVFDL-K-LDALFINNNKFSSSLPK----NI-GNSPVSVLVLANNNLNSCI-- 222 (405)
Q Consensus 159 l~~---L~~L~Ls~N~i~~~----~p~~~~~~-~-L~~L~L~~N~l~~~~~~----~~-~~~~L~~L~L~~n~l~~~~-- 222 (405)
+.+ |++|++++|++.+. +...+... . |++|++++|.+++.... .+ ...+++.|++++|.+.+..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 554 88888887777631 12223333 3 77777777777642221 11 1135666777776666422
Q ss_pred --chHHHhhcccCcEEEccCCCCCCC----CCccCCCCCCccEEEccCCCCCCCCccccC-----CCCCCCEEEeecCcC
Q 045950 223 --PSSLTKMAGTLNEIILLNTGLTGC----FPQDIGLLNQVTVFDVGFNNLVGPLPESMG-----NMKSLEQLNVAHNKL 291 (405)
Q Consensus 223 --p~~l~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l 291 (405)
+..+.... +|++|++++|.+.+. +...+..+++|++|++++|.+++.....+. ..+.|++|++++|.+
T Consensus 184 ~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 184 ALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHhCC-CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 22233333 677777777766532 223345566677777777766642222221 135667777777766
Q ss_pred cc----cCchhhcCCCCCCEEEccCCcCCCCCC--------CC-CCCCcccCCCCC
Q 045950 292 SG----AIPESICRLPKLENFTYSYNFFCSEPL--------TC-LNLKDKDDRQNC 334 (405)
Q Consensus 292 ~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~--------~~-~~L~~L~l~~N~ 334 (405)
++ .+...+..+++|+.+++++|.++.... .. ..|+.+++.+|.
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 52 123344455667777777777665421 11 356666666654
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=3.3e-19 Score=169.40 Aligned_cols=247 Identities=23% Similarity=0.236 Sum_probs=184.7
Q ss_pred EEECCCCCCc-ccCCccccCCCCCcEEeccCCCCCCc----cchhccCCCCCcEEECCCCcCCc------cCchhhhCCC
Q 045950 92 GIDLNHANIA-GTLPEELGLLEDLALFHLNSNRFCGT----IPDSFRNMRLLFELDVSTNQFSG------CFPSVVLCLP 160 (405)
Q Consensus 92 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~ 160 (405)
.|+|..+.++ ......+..+..|+.|+++++.++.. ++..+...+.|++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4678888887 33455567788899999999998643 55567778889999999998872 2345677889
Q ss_pred CCcEEeccccccCCCCChhhhcc-c---cceeecCCCCCCCCCCC----CcC-C-CCcchhhcccCCCCcCC----chHH
Q 045950 161 SLKFLDIRFNQFEGDIPSAVFDL-K---LDALFINNNKFSSSLPK----NIG-N-SPVSVLVLANNNLNSCI----PSSL 226 (405)
Q Consensus 161 ~L~~L~Ls~N~i~~~~p~~~~~~-~---L~~L~L~~N~l~~~~~~----~~~-~-~~L~~L~L~~n~l~~~~----p~~l 226 (405)
+|++|++++|.+.+..+..+... . |++|++++|++.+.... .+. . .+++.|++++|.+++.. ...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 99999999999986555555433 2 99999999998742211 222 2 57999999999998533 2334
Q ss_pred HhhcccCcEEEccCCCCCCC----CCccCCCCCCccEEEccCCCCCCC----CccccCCCCCCCEEEeecCcCcccCchh
Q 045950 227 TKMAGTLNEIILLNTGLTGC----FPQDIGLLNQVTVFDVGFNNLVGP----LPESMGNMKSLEQLNVAHNKLSGAIPES 298 (405)
Q Consensus 227 ~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 298 (405)
..+. +|++|++++|.+.+. ++..+...++|+.|++++|.+.+. +...+..+++|++|++++|.+++.....
T Consensus 162 ~~~~-~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 162 RANR-DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HhCC-CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 4444 799999999999853 333455667999999999999744 3445677899999999999998643333
Q ss_pred hc-----CCCCCCEEEccCCcCCCC--------CCCCCCCCcccCCCCCCCCCC
Q 045950 299 IC-----RLPKLENFTYSYNFFCSE--------PLTCLNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 299 l~-----~l~~L~~L~Ls~N~l~~~--------~~~~~~L~~L~l~~N~l~~~p 339 (405)
+. ..+.|+.|++++|.++.. .+.+.+|+++++++|.++..+
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 32 247999999999999732 235678999999999998764
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=1.6e-18 Score=159.45 Aligned_cols=261 Identities=20% Similarity=0.268 Sum_probs=189.4
Q ss_pred ECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccc-ccc
Q 045950 94 DLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRF-NQF 172 (405)
Q Consensus 94 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~i 172 (405)
+-++.+++ .+|..+- ..-..++|..|+|+.+.+.+|+.+++|+.|||++|+|+.+-|++|.++.+|..|-+.+ |+|
T Consensus 52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 33445555 4554432 4567899999999988888999999999999999999999999999999888777666 999
Q ss_pred CCCCCh-hhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCC-----
Q 045950 173 EGDIPS-AVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLT----- 244 (405)
Q Consensus 173 ~~~~p~-~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~----- 244 (405)
+ .+|. .|..+. ++.|.+.-|++.-...+.+.. .++..|.+..|.+...--..+..+. .++.+.+..|.+-
T Consensus 129 ~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~-~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 129 T-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA-AIKTLHLAQNPFICDCNL 206 (498)
T ss_pred h-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchh-ccchHhhhcCcccccccc
Confidence 9 6665 455565 999999999988665555544 5677888888888743333555665 7888888777621
Q ss_pred -------CCCCccCCCCCCccEEEc-------------------------cCCCCCCCCc-cccCCCCCCCEEEeecCcC
Q 045950 245 -------GCFPQDIGLLNQVTVFDV-------------------------GFNNLVGPLP-ESMGNMKSLEQLNVAHNKL 291 (405)
Q Consensus 245 -------~~~p~~~~~l~~L~~L~L-------------------------~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l 291 (405)
...+..++...-..-..+ +.+...+..| ..|..+++|++|+|++|+|
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 112222222211111111 1111222333 3578999999999999999
Q ss_pred cccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCCCCC-CCCCC---ccccccccCCCCCCCC
Q 045950 292 SGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPNR-PLQRS---AMECKSFYAHPVDCGA 359 (405)
Q Consensus 292 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~-p~~~~---~~~~~~~~~np~~C~~ 359 (405)
+++-+.+|.+...+++|.|..|+|..+-. .+..|+.|+|.+|+|+.+ |..|. .+....+-+||+.|+-
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 98888999999999999999999876543 567899999999999876 44443 3444678999999984
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.67 E-value=8.3e-16 Score=157.99 Aligned_cols=157 Identities=26% Similarity=0.436 Sum_probs=132.6
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC-----CccceecCCCCCCCCCCcEEEEECCCCCCcccCCccccC
Q 045950 36 PNPRLSKAYTALQAWKYAITSDPNGFTSNWYGPDVC-----NYTGVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGL 110 (405)
Q Consensus 36 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~w~~~~~C-----~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~ 110 (405)
..+....|..||+.+|..+. ++. ..+|.+ ++| .|.|+.|..... .....++.|+|++|++.|.+|..++.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~-~~~--~~~W~g-~~C~p~~~~w~Gv~C~~~~~-~~~~~v~~L~L~~n~L~g~ip~~i~~ 440 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLG-LPL--RFGWNG-DPCVPQQHPWSGADCQFDST-KGKWFIDGLGLDNQGLRGFIPNDISK 440 (623)
T ss_pred ccccCchHHHHHHHHHHhcC-Ccc--cCCCCC-CCCCCcccccccceeeccCC-CCceEEEEEECCCCCccccCCHHHhC
Confidence 44567788999999999884 332 137975 455 799999963111 11236999999999999999999999
Q ss_pred CCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc--ccee
Q 045950 111 LEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK--LDAL 188 (405)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~--L~~L 188 (405)
+++|+.|+|++|.+.|.+|..++.+++|++|+|++|++++.+|+.++.+++|++|+|++|++.|.+|..+.... +..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887643 7788
Q ss_pred ecCCCCCCC
Q 045950 189 FINNNKFSS 197 (405)
Q Consensus 189 ~L~~N~l~~ 197 (405)
++.+|....
T Consensus 521 ~~~~N~~lc 529 (623)
T PLN03150 521 NFTDNAGLC 529 (623)
T ss_pred EecCCcccc
Confidence 888886543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.52 E-value=8.5e-16 Score=147.60 Aligned_cols=181 Identities=29% Similarity=0.498 Sum_probs=145.2
Q ss_pred CCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccccceee
Q 045950 110 LLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALF 189 (405)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~ 189 (405)
.+..-...||+.|++. ++|..+..+..|+.+.|++|.+. .+|..++++..|.+|||+.|+++ .+|..+..++|+.|-
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEE
Confidence 4556667888888888 78888888888888889998888 88888888999999999999988 888888888899999
Q ss_pred cCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCC
Q 045950 190 INNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLV 268 (405)
Q Consensus 190 L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 268 (405)
+++|+++ .+|..++. .++..||.+.|.+. .+|..+..+. +|+.|.+..|++. .+|..+..+ .|..||+++|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 9998888 66766664 46788888888887 4777777777 8888888888887 445555543 4788888888888
Q ss_pred CCCccccCCCCCCCEEEeecCcCcccCchhhc
Q 045950 269 GPLPESMGNMKSLEQLNVAHNKLSGAIPESIC 300 (405)
Q Consensus 269 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 300 (405)
.+|-.|.+|+.|++|-|.+|.++ ..|..++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 78888888888888888888887 5565554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.47 E-value=1.5e-15 Score=145.98 Aligned_cols=178 Identities=27% Similarity=0.447 Sum_probs=161.3
Q ss_pred CCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhh
Q 045950 134 NMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLV 212 (405)
Q Consensus 134 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~ 212 (405)
.+..-...||+.|++. .+|..+..+..|+.+.|..|.|. .+|..+..+. |.+|+|+.|+++ .+|..++...|+.|.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEE
Confidence 3445567899999999 89999999999999999999998 9999999998 999999999999 889999999999999
Q ss_pred cccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCc
Q 045950 213 LANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLS 292 (405)
Q Consensus 213 L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 292 (405)
+++|+++ .+|+.++... .|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..+ .|..||++.|+|.
T Consensus 150 ~sNNkl~-~lp~~ig~~~-tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLP-TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccch-hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 9999998 5888888544 9999999999997 67888999999999999999999 778888855 4899999999999
Q ss_pred ccCchhhcCCCCCCEEEccCCcCCCCCC
Q 045950 293 GAIPESICRLPKLENFTYSYNFFCSEPL 320 (405)
Q Consensus 293 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 320 (405)
.+|-.|.++..|++|-|.+|.|...+.
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCChH
Confidence 899999999999999999999998765
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.43 E-value=2.2e-13 Score=133.56 Aligned_cols=195 Identities=31% Similarity=0.497 Sum_probs=104.0
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCC-CCcEEECCCCcCCccCchhhhCCCCCcEEecccc
Q 045950 92 GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMR-LLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170 (405)
Q Consensus 92 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 170 (405)
.+++..+.+...+ ..+..++.++.|++.+|.++ .++.....+. +|++|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3555555553222 22344466677777777766 4555455553 6777777777776 55555666777777777777
Q ss_pred ccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCc
Q 045950 171 QFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQ 249 (405)
Q Consensus 171 ~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~ 249 (405)
++. .++....... |+.|++++|+++ .+|..... .. .|++|++++|.+. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-----------------------~~-~L~~l~~~~N~~~-~~~~ 226 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-----------------------LS-ALEELDLSNNSII-ELLS 226 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-----------------------hh-hhhhhhhcCCcce-ecch
Confidence 776 5555553333 666666666666 33333322 21 3444444444322 2233
Q ss_pred cCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCC
Q 045950 250 DIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEP 319 (405)
Q Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 319 (405)
.+..+.++..+.+.+|++. .++..+..+++++.|++++|+++ .++. ++.+.+++.|++++|.+...+
T Consensus 227 ~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccc
Confidence 3444455555555555554 22444555555555555555555 2332 445555555555555554443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=2.5e-12 Score=126.08 Aligned_cols=193 Identities=30% Similarity=0.448 Sum_probs=129.7
Q ss_pred EEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCC-CCcEEeccccccCCCCChhhhccccceeecCCCC
Q 045950 116 LFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLP-SLKFLDIRFNQFEGDIPSAVFDLKLDALFINNNK 194 (405)
Q Consensus 116 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~ 194 (405)
.+++..|.+... ...+..+..++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~---------- 163 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLP---------- 163 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccc----------
Confidence 344555544311 222333445555555555555 4444444442 5555555555554 4433333333
Q ss_pred CCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccc
Q 045950 195 FSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPES 274 (405)
Q Consensus 195 l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 274 (405)
.|+.|++++|++.. ++....... .|+.|++++|++. .+|........|+.|++++|++. ..+..
T Consensus 164 ------------~L~~L~l~~N~l~~-l~~~~~~~~-~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~ 227 (394)
T COG4886 164 ------------NLKNLDLSFNDLSD-LPKLLSNLS-NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS 227 (394)
T ss_pred ------------cccccccCCchhhh-hhhhhhhhh-hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh
Confidence 45555555555543 444443555 8999999999998 55665566777999999999765 56677
Q ss_pred cCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC--CCCCCCcccCCCCCCCCC
Q 045950 275 MGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL--TCLNLKDKDDRQNCIPNR 338 (405)
Q Consensus 275 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~ 338 (405)
+..+.++..+.+.+|++. .++..+..+++++.|++++|+++.... ...+++.|++++|.+...
T Consensus 228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hhhcccccccccCCceee-eccchhccccccceeccccccccccccccccCccCEEeccCcccccc
Confidence 889999999999999998 557888899999999999999998765 567899999999988765
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=1.3e-12 Score=119.34 Aligned_cols=239 Identities=17% Similarity=0.167 Sum_probs=138.0
Q ss_pred CcEEEEECCCCCCccc----CCccccCCCCCcEEeccCCC---CCCccchh-------ccCCCCCcEEECCCCcCCccCc
Q 045950 88 LTVAGIDLNHANIAGT----LPEELGLLEDLALFHLNSNR---FCGTIPDS-------FRNMRLLFELDVSTNQFSGCFP 153 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~---l~~~~~~~-------~~~l~~L~~L~Ls~N~l~~~~p 153 (405)
..++.|+|++|.+... +...+...++|+..++++-. +...+|+. +...++|++||||+|-+.-..+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4567777777766422 33445566666666665431 22223332 2334566666666666653333
Q ss_pred hh----hhCCCCCcEEeccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCc----hH
Q 045950 154 SV----VLCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIP----SS 225 (405)
Q Consensus 154 ~~----l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p----~~ 225 (405)
.. +..+..|++|.|.+|.+. ......-...|.+|. .|+.. -...+|++++.++|++..... ..
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~--~~kk~------~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELA--VNKKA------ASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHH--HHhcc------CCCcceEEEEeeccccccccHHHHHHH
Confidence 22 234556666666666554 111110000022221 11100 011457777777777654322 23
Q ss_pred HHhhcccCcEEEccCCCCCCC----CCccCCCCCCccEEEccCCCCCCC----CccccCCCCCCCEEEeecCcCcccCch
Q 045950 226 LTKMAGTLNEIILLNTGLTGC----FPQDIGLLNQVTVFDVGFNNLVGP----LPESMGNMKSLEQLNVAHNKLSGAIPE 297 (405)
Q Consensus 226 l~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~ 297 (405)
+.... .|+.+.+..|.|... +-..+..+++|+.|||.+|-++.. +...+..+++|++|+++++.+...-..
T Consensus 181 ~~~~~-~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 181 FQSHP-TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred HHhcc-ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 33333 788888888887532 234567788899999999988732 334466778889999999888755443
Q ss_pred hh-----cCCCCCCEEEccCCcCCCCC--------CCCCCCCcccCCCCCCC
Q 045950 298 SI-----CRLPKLENFTYSYNFFCSEP--------LTCLNLKDKDDRQNCIP 336 (405)
Q Consensus 298 ~l-----~~l~~L~~L~Ls~N~l~~~~--------~~~~~L~~L~l~~N~l~ 336 (405)
.| ...++|++|.+.+|.++... ...+.|..|+|++|.+.
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 33 24688899999999887542 13567888999999884
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=3.7e-11 Score=123.80 Aligned_cols=102 Identities=28% Similarity=0.457 Sum_probs=72.6
Q ss_pred CcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccC
Q 045950 233 LNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSY 312 (405)
Q Consensus 233 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 312 (405)
++.|+|++|++.+.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcCCCCCCCC-----CCCCcccCCCCC
Q 045950 313 NFFCSEPLTC-----LNLKDKDDRQNC 334 (405)
Q Consensus 313 N~l~~~~~~~-----~~L~~L~l~~N~ 334 (405)
|++++.+|.. .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 7777766631 234455666654
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=8.7e-12 Score=116.91 Aligned_cols=207 Identities=22% Similarity=0.257 Sum_probs=136.8
Q ss_pred cCCCCCcEEeccCCCCCCccc--hhccCCCCCcEEECCCCcCCcc--CchhhhCCCCCcEEeccccccCCCCChhhh-cc
Q 045950 109 GLLEDLALFHLNSNRFCGTIP--DSFRNMRLLFELDVSTNQFSGC--FPSVVLCLPSLKFLDIRFNQFEGDIPSAVF-DL 183 (405)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~-~~ 183 (405)
+++++|+.+.|.+..+.. .+ .....+++++.||||+|-+... +-.....|++|+.|+|+.|++......... ..
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 467788888888887762 23 3567788999999999988743 234556789999999999988633333222 22
Q ss_pred c-cceeecCCCCCCCCCCCC--cCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCC-CccCCCCCCccE
Q 045950 184 K-LDALFINNNKFSSSLPKN--IGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCF-PQDIGLLNQVTV 259 (405)
Q Consensus 184 ~-L~~L~L~~N~l~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~ 259 (405)
+ |+.|.|+.|.++...... ...++++.|+|..|...........-+. .|++|+|++|++.... -...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~-~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ-TLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh-HHhhccccCCcccccccccccccccchhh
Confidence 3 888888888887322111 2336788888888853222222222233 7888888888875332 234567888888
Q ss_pred EEccCCCCCCC-Cccc-----cCCCCCCCEEEeecCcCcccCc--hhhcCCCCCCEEEccCCcCCCC
Q 045950 260 FDVGFNNLVGP-LPES-----MGNMKSLEQLNVAHNKLSGAIP--ESICRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 260 L~L~~N~l~~~-~p~~-----~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ 318 (405)
|+++.+.+... .|+. ...+++|+.|++..|+|. ..+ ..+..+++|+.|....|.|+..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 88888888743 2222 245678888888888886 222 2345567777778777877643
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.3e-11 Score=110.60 Aligned_cols=128 Identities=20% Similarity=0.146 Sum_probs=97.0
Q ss_pred CcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEe
Q 045950 207 PVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNV 286 (405)
Q Consensus 207 ~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 286 (405)
.|+.+||++|.|+ .+.++..-.+ .++.|++++|.|... +.+..+.+|+.|||++|.++ .+..+-..+-+++.|.|
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 3777888888776 3445555444 899999999988643 34778889999999999888 55555566778889999
Q ss_pred ecCcCcccCchhhcCCCCCCEEEccCCcCCCC-----CCCCCCCCcccCCCCCCCCCCCC
Q 045950 287 AHNKLSGAIPESICRLPKLENFTYSYNFFCSE-----PLTCLNLKDKDDRQNCIPNRPLQ 341 (405)
Q Consensus 287 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----~~~~~~L~~L~l~~N~l~~~p~~ 341 (405)
++|.|.. -..+.++-+|..||+++|+|... +..++.|+.+.|.+|.|.+.++-
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 9998862 34567778889999999998753 34677888999999999887753
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=4.6e-11 Score=102.12 Aligned_cols=119 Identities=24% Similarity=0.334 Sum_probs=43.1
Q ss_pred CCcchhhcccCCCCcCCchHHH-hhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCcccc-CCCCCCCE
Q 045950 206 SPVSVLVLANNNLNSCIPSSLT-KMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESM-GNMKSLEQ 283 (405)
Q Consensus 206 ~~L~~L~L~~n~l~~~~p~~l~-~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~ 283 (405)
.++++|+|++|.|... +.+. .+. +|+.|++++|+|... ..+..+++|+.|++++|+|+. +.+.+ ..+++|++
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~-~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLD-KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-T-T--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccc--cchhhhhc-CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 3455555555555431 2343 233 778888888888744 246677888888888888883 43334 35788888
Q ss_pred EEeecCcCccc-CchhhcCCCCCCEEEccCCcCCCCCC-------CCCCCCcccC
Q 045950 284 LNVAHNKLSGA-IPESICRLPKLENFTYSYNFFCSEPL-------TCLNLKDKDD 330 (405)
Q Consensus 284 L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~L~~L~l 330 (405)
|++++|+|.+. .-..+..+++|+.|++.+|.++.... .+++|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88888888642 12456677888888888888876543 3567777663
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.7e-11 Score=115.02 Aligned_cols=205 Identities=21% Similarity=0.220 Sum_probs=148.4
Q ss_pred ccCCCCCcEEECCCCcCCccCc--hhhhCCCCCcEEeccccccCCCCC---hhhhccc-cceeecCCCCCCCCCCCCcC-
Q 045950 132 FRNMRLLFELDVSTNQFSGCFP--SVVLCLPSLKFLDIRFNQFEGDIP---SAVFDLK-LDALFINNNKFSSSLPKNIG- 204 (405)
Q Consensus 132 ~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~i~~~~p---~~~~~~~-L~~L~L~~N~l~~~~~~~~~- 204 (405)
=+++.+|++..|.+..+. ..+ .....+++++.|||+.|-+. .+- .....++ |+.|+|+.|++.........
T Consensus 117 Qsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 356789999999999887 333 36778999999999999887 322 3334556 99999999998743333222
Q ss_pred -CCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCc--cccCCCCCC
Q 045950 205 -NSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLP--ESMGNMKSL 281 (405)
Q Consensus 205 -~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L 281 (405)
...++.|.++.|.++..--..+....++|+.|++..|.....-......+..|+.|||++|++.. .+ ...+.++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccch
Confidence 25688999999999854333443333499999999996333333445567889999999999973 33 346788999
Q ss_pred CEEEeecCcCccc-Cchh-----hcCCCCCCEEEccCCcCCCCCC-----CCCCCCcccCCCCCCCCCC
Q 045950 282 EQLNVAHNKLSGA-IPES-----ICRLPKLENFTYSYNFFCSEPL-----TCLNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 282 ~~L~L~~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~~~p 339 (405)
+.|+++.+.|... +|+. ...+++|+.|++..|++..... .+.+|+.|....|.|+...
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 9999999998743 2332 3467899999999999965542 4567888888888886654
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.09 E-value=8.3e-12 Score=122.95 Aligned_cols=236 Identities=22% Similarity=0.215 Sum_probs=126.8
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
.+..+.+..|.+.. +-..+..+++|+.|++.+|+|.. +...+..+.+|++|++++|+|+.. ..+..+..|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 45555566666653 22335666777777777777763 333356667777777777777643 234556667777777
Q ss_pred ccccCCCCChhhhccccceeecCCCCCCCCCCC-CcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCC
Q 045950 169 FNQFEGDIPSAVFDLKLDALFINNNKFSSSLPK-NIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCF 247 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 247 (405)
+|.|. .+...-....|+.+++++|++...-+. .-...+++.+++.+|.+... ..+.... .+..+++..|.+...-
T Consensus 149 ~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~-~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 149 GNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLK-KLVLLSLLDNKISKLE 224 (414)
T ss_pred cCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHH-HHHHhhcccccceecc
Confidence 77775 333222222267777777776633331 12334566666766666532 2232222 4444466666654322
Q ss_pred CccCCCCCC--ccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCC------
Q 045950 248 PQDIGLLNQ--VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEP------ 319 (405)
Q Consensus 248 p~~~~~l~~--L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~------ 319 (405)
+ +..+.. |+.+++++|++. ..+..+..+..+..|++.+|++... ..+...+.+..+.+..|.+....
T Consensus 225 ~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (414)
T KOG0531|consen 225 G--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEY 299 (414)
T ss_pred C--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccc
Confidence 1 112222 666667777666 3334455566666667666666521 22334455555556666554221
Q ss_pred --CCCCCCCcccCCCCCCCC
Q 045950 320 --LTCLNLKDKDDRQNCIPN 337 (405)
Q Consensus 320 --~~~~~L~~L~l~~N~l~~ 337 (405)
.....+..+.+.+|.+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 300 ITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cccccccccccccccCcccc
Confidence 123455666666665544
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=2.6e-11 Score=110.81 Aligned_cols=210 Identities=16% Similarity=0.154 Sum_probs=131.8
Q ss_pred CCcEEEEECCCCC---CcccCCc-------cccCCCCCcEEeccCCCCCCccch----hccCCCCCcEEECCCCcCCccC
Q 045950 87 SLTVAGIDLNHAN---IAGTLPE-------ELGLLEDLALFHLNSNRFCGTIPD----SFRNMRLLFELDVSTNQFSGCF 152 (405)
Q Consensus 87 ~~~l~~L~L~~n~---l~~~~p~-------~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~ 152 (405)
.+.++..++++-- +...+|+ ++...++|++|+||+|.+.-.-+. .+.++..|++|+|.+|.+....
T Consensus 57 ~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a 136 (382)
T KOG1909|consen 57 KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA 136 (382)
T ss_pred cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH
Confidence 3477788877542 2223443 345667999999999998744333 3567899999999999987322
Q ss_pred chh-------------hhCCCCCcEEeccccccCCCCCh----hhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcc
Q 045950 153 PSV-------------VLCLPSLKFLDIRFNQFEGDIPS----AVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLA 214 (405)
Q Consensus 153 p~~-------------l~~l~~L~~L~Ls~N~i~~~~p~----~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~ 214 (405)
... ...-+.|+++...+|++...-.. .+...+ |+.+.+..|.|......
T Consensus 137 g~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~------------- 203 (382)
T KOG1909|consen 137 GGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT------------- 203 (382)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhH-------------
Confidence 222 12345788888888887622221 222233 77777777766421110
Q ss_pred cCCCCcCCchHHHhhcccCcEEEccCCCCCCC----CCccCCCCCCccEEEccCCCCCCCCcccc-----CCCCCCCEEE
Q 045950 215 NNNLNSCIPSSLTKMAGTLNEIILLNTGLTGC----FPQDIGLLNQVTVFDVGFNNLVGPLPESM-----GNMKSLEQLN 285 (405)
Q Consensus 215 ~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~ 285 (405)
.+...+..++ +|+.|||..|-++.. +...+..++.|+.|++++|.+.......| ...++|++|.
T Consensus 204 ------al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~ 276 (382)
T KOG1909|consen 204 ------ALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLE 276 (382)
T ss_pred ------HHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceec
Confidence 1223444444 677777777766432 33455667788888888888875433332 2367888888
Q ss_pred eecCcCccc----CchhhcCCCCCCEEEccCCcCC
Q 045950 286 VAHNKLSGA----IPESICRLPKLENFTYSYNFFC 316 (405)
Q Consensus 286 L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 316 (405)
+.+|.|+.. +...+...+.|..|+|++|++.
T Consensus 277 l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 277 LAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 888888632 2334456788888999999883
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.06 E-value=2.7e-11 Score=119.29 Aligned_cols=236 Identities=19% Similarity=0.234 Sum_probs=143.9
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
.+..++...+.+.+..-. ...+..++.+.+..|.|.. +-..+..+.+|+.|++.+|+|. .+...+..+++|++|+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecc
Confidence 344445544443322111 1455666777777777773 3444677788888888888887 444436677888888888
Q ss_pred ccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCC
Q 045950 169 FNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCF 247 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 247 (405)
+|.|+ .+.. +..+. |+.|++++|.+. .+...-....++.+++++|++...-+.....+. +++.+++.+|.+...
T Consensus 127 ~N~I~-~i~~-l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~-~l~~l~l~~n~i~~i- 201 (414)
T KOG0531|consen 127 FNKIT-KLEG-LSTLTLLKELNLSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELI-SLEELDLGGNSIREI- 201 (414)
T ss_pred ccccc-cccc-hhhccchhhheeccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhcc-chHHHhccCCchhcc-
Confidence 88886 3332 22333 888888888877 333333345677888888887753331034444 777888888877532
Q ss_pred CccCCCCCCccEEEccCCCCCCCCccccCCCCC--CCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC--CCC
Q 045950 248 PQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKS--LEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL--TCL 323 (405)
Q Consensus 248 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~ 323 (405)
..+..+..+..+++..|.++..- .+..+.. |+.+++++|++. .++..+..+.++..|++.+|++...-. ...
T Consensus 202 -~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~ 277 (414)
T KOG0531|consen 202 -EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLERLP 277 (414)
T ss_pred -cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccccccccc
Confidence 23344455555677777776322 1222233 778888888887 444566667778888888887765432 334
Q ss_pred CCCcccCCCCCCC
Q 045950 324 NLKDKDDRQNCIP 336 (405)
Q Consensus 324 ~L~~L~l~~N~l~ 336 (405)
.+..+....|.+.
T Consensus 278 ~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 278 KLSELWLNDNKLA 290 (414)
T ss_pred hHHHhccCcchhc
Confidence 4555556666554
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=4.2e-11 Score=107.44 Aligned_cols=128 Identities=15% Similarity=0.170 Sum_probs=102.1
Q ss_pred HHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCC
Q 045950 225 SLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304 (405)
Q Consensus 225 ~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 304 (405)
.+..+. .|+++|+++|.|+ .+..+..-.+.++.|++++|.|. .+ ..+..+++|+.|||++|.++ .+..+-.++.+
T Consensus 279 ~~dTWq-~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 279 SADTWQ-ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred ecchHh-hhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 344444 7999999999997 66778888999999999999998 33 34888999999999999998 66666678899
Q ss_pred CCEEEccCCcCCCCCC--CCCCCCcccCCCCCCCCCCC--CCCcccc---ccccCCCCCC
Q 045950 305 LENFTYSYNFFCSEPL--TCLNLKDKDDRQNCIPNRPL--QRSAMEC---KSFYAHPVDC 357 (405)
Q Consensus 305 L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~p~--~~~~~~~---~~~~~np~~C 357 (405)
++.|.|++|.|..... .+-+|..||+++|+|..+.. ....+.| ..+.+||+.-
T Consensus 354 IKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred EeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999999999876543 56789999999999987642 2233344 6788999664
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=1.6e-10 Score=98.74 Aligned_cols=124 Identities=21% Similarity=0.275 Sum_probs=39.6
Q ss_pred hCCCCCcEEeccccccCCCCChhhh-ccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCc
Q 045950 157 LCLPSLKFLDIRFNQFEGDIPSAVF-DLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLN 234 (405)
Q Consensus 157 ~~l~~L~~L~Ls~N~i~~~~p~~~~-~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~ 234 (405)
.+..++++|+|.+|+|+ .+. .+. .+. |+.|++++|.++. + +.+..+. .|+
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l------------------------~~l~~L~-~L~ 67 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L------------------------EGLPGLP-RLK 67 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---------------------------TT----T-T--
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c------------------------cCccChh-hhh
Confidence 34456777888888776 343 233 233 6777777776662 1 1233344 667
Q ss_pred EEEccCCCCCCCCCccC-CCCCCccEEEccCCCCCCCC-ccccCCCCCCCEEEeecCcCcccCch----hhcCCCCCCEE
Q 045950 235 EIILLNTGLTGCFPQDI-GLLNQVTVFDVGFNNLVGPL-PESMGNMKSLEQLNVAHNKLSGAIPE----SICRLPKLENF 308 (405)
Q Consensus 235 ~L~l~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L 308 (405)
+|++++|.|+.. ...+ ..+++|+.|++++|+|...- -..+..+++|+.|+|.+|.++.. +. .+..+|+|+.|
T Consensus 68 ~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 68 TLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEE
T ss_pred hcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhhee
Confidence 777777776643 2222 34667777777777776321 13456678888888888888733 22 35567888887
Q ss_pred Ec
Q 045950 309 TY 310 (405)
Q Consensus 309 ~L 310 (405)
|-
T Consensus 146 D~ 147 (175)
T PF14580_consen 146 DG 147 (175)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.2e-09 Score=76.95 Aligned_cols=60 Identities=28% Similarity=0.502 Sum_probs=39.9
Q ss_pred CccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcC
Q 045950 256 QVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFF 315 (405)
Q Consensus 256 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 315 (405)
+|++|++++|++....+..|.++++|++|++++|.|+...+..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566677777766644445666677777777777777655555666777777777777654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.1e-09 Score=77.10 Aligned_cols=60 Identities=33% Similarity=0.558 Sum_probs=35.5
Q ss_pred CCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecccccc
Q 045950 113 DLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQF 172 (405)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i 172 (405)
+|++|++++|+++...+..|.++++|++|++++|+++...+..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666644445556666666666666666655555566666666666666653
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.72 E-value=3.4e-10 Score=112.27 Aligned_cols=128 Identities=22% Similarity=0.270 Sum_probs=91.9
Q ss_pred CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCcc-ccCCCCCCCEE
Q 045950 206 SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPE-SMGNMKSLEQL 284 (405)
Q Consensus 206 ~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L 284 (405)
..|...+.+.|++. .+..++.-+. .++.|+|++|++... +.+..+++|++|||++|.+. .+|. ...++ +|+.|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~-ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLP-ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHH-Hhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheee
Confidence 44777788888876 2444555554 888999999988755 36778888999999999888 5553 22333 38889
Q ss_pred EeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC-----CCCCCCcccCCCCCCCCCCCC
Q 045950 285 NVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL-----TCLNLKDKDDRQNCIPNRPLQ 341 (405)
Q Consensus 285 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~~~p~~ 341 (405)
.+++|.++. -..+.++.+|+.||+++|-|.+.-. .+..|+.|+|.||.+.--|..
T Consensus 238 ~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h 297 (1096)
T KOG1859|consen 238 NLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH 297 (1096)
T ss_pred eecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH
Confidence 999998873 2356788888999999998877542 345678888888877655443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.7e-08 Score=106.87 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=56.9
Q ss_pred cEEEEECCCCC--CcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 89 TVAGIDLNHAN--IAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 89 ~l~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
.+++|-+.+|. +.....+.|..++.|+.|||++|.=-+.+|..++.|-+|++|++++..+. .+|..+.+|..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555554 33222333555666666666655544456666666666666666666665 5666666666666666
Q ss_pred ccccccCCCCChhhhccc-cceeecCCC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNN 193 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N 193 (405)
+.++.....++.....+. |++|.+..-
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 665554434444444344 666655443
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.64 E-value=4.5e-10 Score=111.49 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=99.7
Q ss_pred cCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchh-hcCCCCCCEEEc
Q 045950 232 TLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPES-ICRLPKLENFTY 310 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L 310 (405)
.|...++++|.+. ....++.-++.|+.|||++|+++.. ..+..+++|++|||++|.++ .+|.. ..++ +|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 6778889999886 4556777889999999999999844 37889999999999999998 56653 2233 4999999
Q ss_pred cCCcCCCCC--CCCCCCCcccCCCCCCCCCCC-----CCCccccccccCCCCCCCCC
Q 045950 311 SYNFFCSEP--LTCLNLKDKDDRQNCIPNRPL-----QRSAMECKSFYAHPVDCGAF 360 (405)
Q Consensus 311 s~N~l~~~~--~~~~~L~~L~l~~N~l~~~p~-----~~~~~~~~~~~~np~~C~~~ 360 (405)
++|.++..- .++.+|+.||+++|.|.+... ....+....++|||+-|.+|
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 999998764 478899999999999988642 23445557789999999864
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=3.3e-08 Score=104.71 Aligned_cols=129 Identities=24% Similarity=0.245 Sum_probs=101.3
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCC--CCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCc
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNR--FCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLK 163 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 163 (405)
....++++.+-+|.+. .++.... .+.|+.|-+.+|. +.......|..++.|++|||++|.--+.+|..++.|-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 4456777777777765 3333332 3479999999996 5544555688899999999999887779999999999999
Q ss_pred EEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcC-CCCcchhhcccCC
Q 045950 164 FLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIG-NSPVSVLVLANNN 217 (405)
Q Consensus 164 ~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~-~~~L~~L~L~~n~ 217 (405)
+|++++..+. .+|..+..+. |.+|++..+.....++.... ..+|++|.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999999 9999999998 99999998876655555554 4678887776554
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.60 E-value=6.2e-09 Score=92.44 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=87.6
Q ss_pred CCcchhhcccCCCCcCCch----HHHhhcccCcEEEccCCCCCCC-----CCccCCCCCCccEEEccCCCCCCC----Cc
Q 045950 206 SPVSVLVLANNNLNSCIPS----SLTKMAGTLNEIILLNTGLTGC-----FPQDIGLLNQVTVFDVGFNNLVGP----LP 272 (405)
Q Consensus 206 ~~L~~L~L~~n~l~~~~p~----~l~~l~~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~----~p 272 (405)
+.|+.++...|++...... .+... ..|+.+.+..|.|.-. +-..+..+.+|+.|||.+|-++-. +.
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh-~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESH-ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhh-cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 4467777777776532211 12222 3788888988888632 112234678899999999988732 23
Q ss_pred cccCCCCCCCEEEeecCcCcccCchhh----c--CCCCCCEEEccCCcCCCCCC-----------CCCCCCcccCCCCCC
Q 045950 273 ESMGNMKSLEQLNVAHNKLSGAIPESI----C--RLPKLENFTYSYNFFCSEPL-----------TCLNLKDKDDRQNCI 335 (405)
Q Consensus 273 ~~~~~l~~L~~L~L~~N~l~~~~p~~l----~--~l~~L~~L~Ls~N~l~~~~~-----------~~~~L~~L~l~~N~l 335 (405)
..+..++.|+.|.+.+|-++.....++ . ..++|..|-..+|...+.+. .++-|..|.+.+|.|
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 345666789999999998875544432 1 46889999999998776542 234467788888988
Q ss_pred CCC
Q 045950 336 PNR 338 (405)
Q Consensus 336 ~~~ 338 (405)
...
T Consensus 316 ~E~ 318 (388)
T COG5238 316 KEL 318 (388)
T ss_pred hhH
Confidence 764
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=4.9e-08 Score=78.20 Aligned_cols=129 Identities=22% Similarity=0.303 Sum_probs=87.2
Q ss_pred cEEEEECCCCCCcccCCcc---ccCCCCCcEEeccCCCCCCccchhccC-CCCCcEEECCCCcCCccCchhhhCCCCCcE
Q 045950 89 TVAGIDLNHANIAGTLPEE---LGLLEDLALFHLNSNRFCGTIPDSFRN-MRLLFELDVSTNQFSGCFPSVVLCLPSLKF 164 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 164 (405)
.+..+||+.+++. .+++. +....+|+..+|++|.+. .+|..|.. .+.++.|++++|+|+ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4556777777765 33333 455567777888888888 45655544 457888888888888 78888888888888
Q ss_pred EeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcC
Q 045950 165 LDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSC 221 (405)
Q Consensus 165 L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 221 (405)
|++++|.+. ..|..+..+. +..|+..+|.+....-+.+.....-..++.++.+.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccccc
Confidence 888888887 7777777766 8888888887763322222222233344455555443
No 47
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.38 E-value=5.2e-07 Score=58.31 Aligned_cols=39 Identities=36% Similarity=0.778 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCC---CCCCCccceecC
Q 045950 41 SKAYTALQAWKYAITSDPNGFTSNWYG---PDVCNYTGVYCA 79 (405)
Q Consensus 41 ~~~~~al~~~~~~~~~~~~~~~~~w~~---~~~C~w~gv~c~ 79 (405)
.+|.+||++||+++..++...+.+|.. .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578999999999997777788999974 689999999995
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=4.9e-08 Score=86.84 Aligned_cols=229 Identities=17% Similarity=0.157 Sum_probs=156.5
Q ss_pred CcEEEEECCCCCCccc----CCccccCCCCCcEEeccCCCCC---Cccc-------hhccCCCCCcEEECCCCcCCccCc
Q 045950 88 LTVAGIDLNHANIAGT----LPEELGLLEDLALFHLNSNRFC---GTIP-------DSFRNMRLLFELDVSTNQFSGCFP 153 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~---~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~p 153 (405)
..++.+||++|.|... +...+.+-.+|+..++++-... ..++ .++-++++|+..+||+|-+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 3688999999998744 3445666788888888764322 2233 335678999999999999987666
Q ss_pred hh----hhCCCCCcEEeccccccC----CCCChhhhc---------cc-cceeecCCCCCCCCCCCCc-----C-CCCcc
Q 045950 154 SV----VLCLPSLKFLDIRFNQFE----GDIPSAVFD---------LK-LDALFINNNKFSSSLPKNI-----G-NSPVS 209 (405)
Q Consensus 154 ~~----l~~l~~L~~L~Ls~N~i~----~~~p~~~~~---------~~-L~~L~L~~N~l~~~~~~~~-----~-~~~L~ 209 (405)
+. +..-..|++|.|++|.+. +.+...++. .+ |+......|++.. .+... . ...++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCce
Confidence 54 455678999999999875 122222221 23 9999999999873 22221 1 13578
Q ss_pred hhhcccCCCCcCC-----chHHHhhcccCcEEEccCCCCCCC----CCccCCCCCCccEEEccCCCCCCCCcccc-----
Q 045950 210 VLVLANNNLNSCI-----PSSLTKMAGTLNEIILLNTGLTGC----FPQDIGLLNQVTVFDVGFNNLVGPLPESM----- 275 (405)
Q Consensus 210 ~L~L~~n~l~~~~-----p~~l~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~----- 275 (405)
.+.+..|.|.-.. ...++... +|+.||+..|-++.. +...+..++.|+.|.+.+|-++......+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhC-cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 8888888876431 22344444 899999999988643 33455667789999999998875433322
Q ss_pred -CCCCCCCEEEeecCcCcccCchh-----h--cCCCCCCEEEccCCcCCCC
Q 045950 276 -GNMKSLEQLNVAHNKLSGAIPES-----I--CRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 276 -~~l~~L~~L~L~~N~l~~~~p~~-----l--~~l~~L~~L~Ls~N~l~~~ 318 (405)
...++|..|-+.+|.+.+.+-.. + ..++-|..|.+.+|+|...
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 23578999999999887654322 1 2567777888889998754
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=1.8e-07 Score=74.99 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=89.3
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
...+++.++|++|.+....+..-..++.++.|++++|+|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|..|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 3458999999999999544333355678999999999999 78999999999999999999999 788888889999999
Q ss_pred eccccccCCCCChhhhccc-cceeecCCCCCCCCCC
Q 045950 166 DIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLP 200 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~ 200 (405)
+..+|.+. .++-.+.... .-..++.++.+.+.-+
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 99999998 7776655444 3344456666665443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=3.1e-07 Score=82.79 Aligned_cols=205 Identities=20% Similarity=0.210 Sum_probs=103.7
Q ss_pred CCCCcEEeccCCCCCC--ccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCC-hhhhccc-cc
Q 045950 111 LEDLALFHLNSNRFCG--TIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIP-SAVFDLK-LD 186 (405)
Q Consensus 111 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p-~~~~~~~-L~ 186 (405)
.+.++.+||.+|.|+. .+..-+.+++.|+.|+|+.|.+...+-..-..+.+|+.|-|.+..+..... ..+..++ ++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4566667777777663 233445566777777777777663322111244566666666665542222 2222333 56
Q ss_pred eeecCCCCCCCCCC--CCcCC--CCcchhhcccCCCCcC-CchHHHhhcccCcEEEccCCCCCCCC-CccCCCCCCccEE
Q 045950 187 ALFINNNKFSSSLP--KNIGN--SPVSVLVLANNNLNSC-IPSSLTKMAGTLNEIILLNTGLTGCF-PQDIGLLNQVTVF 260 (405)
Q Consensus 187 ~L~L~~N~l~~~~~--~~~~~--~~L~~L~L~~n~l~~~-~p~~l~~l~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L 260 (405)
+|+++.|.+.-... ..... ..++.|.+..|....- ---.+.+..+++..+.+..|.+...- ...+..++.+-.|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 66666663321100 00101 1122222222221100 00011122226777777777654321 2334445566678
Q ss_pred EccCCCCCCC-CccccCCCCCCCEEEeecCcCcccCch------hhcCCCCCCEEEccCCcCCC
Q 045950 261 DVGFNNLVGP-LPESMGNMKSLEQLNVAHNKLSGAIPE------SICRLPKLENFTYSYNFFCS 317 (405)
Q Consensus 261 ~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~ 317 (405)
+|+.|+|... --+.+.+++.|..|.+++|.+.+.+-. -++++++++.|+=+ +++.
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss 291 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KISS 291 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccch
Confidence 8888887632 124567788888888888877643321 24567777777644 5544
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.7e-08 Score=86.67 Aligned_cols=175 Identities=15% Similarity=0.109 Sum_probs=84.6
Q ss_pred CCcEEECCCCcCCc-cCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCC-CCCCCCCCCc--CCCCcchh
Q 045950 137 LLFELDVSTNQFSG-CFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNN-KFSSSLPKNI--GNSPVSVL 211 (405)
Q Consensus 137 ~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N-~l~~~~~~~~--~~~~L~~L 211 (405)
.|++|||++..|+. .+-..+..+.+|+.|.|.++++...+...+.+-. |+.|+++.+ .++......+ ....|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35555555555542 1222344455555555555555544444444444 555555543 2221100000 11335555
Q ss_pred hcccCCCCcCC-chHHHhhcccCcEEEccCCCCC---CCCCccCCCCCCccEEEccCCC-CCCCCccccCCCCCCCEEEe
Q 045950 212 VLANNNLNSCI-PSSLTKMAGTLNEIILLNTGLT---GCFPQDIGLLNQVTVFDVGFNN-LVGPLPESMGNMKSLEQLNV 286 (405)
Q Consensus 212 ~L~~n~l~~~~-p~~l~~l~~~L~~L~l~~n~l~---~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L 286 (405)
+++.+.+.... -..+.....+|..|+++++.-. ..+..-...+++|.+|||++|. ++......|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 55555544321 1122222335666666654311 0111122456677777777653 33333344566777777777
Q ss_pred ecCcCcccCchhh---cCCCCCCEEEccCC
Q 045950 287 AHNKLSGAIPESI---CRLPKLENFTYSYN 313 (405)
Q Consensus 287 ~~N~l~~~~p~~l---~~l~~L~~L~Ls~N 313 (405)
+.+.. .+|+.+ ...|.|.+||+.+.
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77653 455543 45567777776653
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=2.2e-06 Score=55.55 Aligned_cols=36 Identities=31% Similarity=0.575 Sum_probs=16.2
Q ss_pred CccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCc
Q 045950 256 QVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLS 292 (405)
Q Consensus 256 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 292 (405)
+|++|++++|+|+ .+|..+.++++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555554 33334444555555555555444
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=8.8e-08 Score=86.29 Aligned_cols=176 Identities=14% Similarity=0.083 Sum_probs=107.2
Q ss_pred CCcEEeccCCCCCCc-cchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccc-cCCCCCh-hhhccc-ccee
Q 045950 113 DLALFHLNSNRFCGT-IPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQ-FEGDIPS-AVFDLK-LDAL 188 (405)
Q Consensus 113 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-i~~~~p~-~~~~~~-L~~L 188 (405)
.|++|||++..|+.. .-.-++.+.+|+.|.|.++++...+...++.-.+|+.|+|+.+. ++..-.. .+..+. |..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777766622 22335566777777777777777666677777777777777643 3311111 122333 7777
Q ss_pred ecCCCCCCCCCCCCc---CCCCcchhhcccCCC--CcCCchHHHhhcccCcEEEccCCC-CCCCCCccCCCCCCccEEEc
Q 045950 189 FINNNKFSSSLPKNI---GNSPVSVLVLANNNL--NSCIPSSLTKMAGTLNEIILLNTG-LTGCFPQDIGLLNQVTVFDV 262 (405)
Q Consensus 189 ~L~~N~l~~~~~~~~---~~~~L~~L~L~~n~l--~~~~p~~l~~l~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~L 262 (405)
+++.+.+.......+ -..++..|++++.+- ....-..+.+-.++|.+|||+.|. ++...-..|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777776654332211 114577777777542 111222333333489999998875 34333455677889999999
Q ss_pred cCCCCCCCCccc---cCCCCCCCEEEeecCc
Q 045950 263 GFNNLVGPLPES---MGNMKSLEQLNVAHNK 290 (405)
Q Consensus 263 ~~N~l~~~~p~~---~~~l~~L~~L~L~~N~ 290 (405)
+.|.. .+|+. +...+.|.+|++.+.-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 88865 45553 5677899999987764
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.3e-06 Score=54.69 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=17.2
Q ss_pred CCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCC
Q 045950 113 DLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFS 149 (405)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 149 (405)
+|++|++++|+|+ .++..++++++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 33444555555555555555554
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=1.8e-05 Score=76.13 Aligned_cols=134 Identities=13% Similarity=0.258 Sum_probs=74.9
Q ss_pred ccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCC-CcCCccCchhhhCCCCCcEEecccc-ccCCCCChhhhcccc
Q 045950 108 LGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVST-NQFSGCFPSVVLCLPSLKFLDIRFN-QFEGDIPSAVFDLKL 185 (405)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N-~i~~~~p~~~~~~~L 185 (405)
+..+.+++.|++++|.++ .+|. + ..+|++|++++ +.++ .+|..+ ..+|++|++++| .+. .+|.. |
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s-----L 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPES-----V 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccccc-----c
Confidence 455688999999999888 5562 2 24699999987 4444 667655 258999999988 444 44432 6
Q ss_pred ceeecCCCCCCC--CCCCCcCCCCcchhhcccCCCC--cCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEE
Q 045950 186 DALFINNNKFSS--SLPKNIGNSPVSVLVLANNNLN--SCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFD 261 (405)
Q Consensus 186 ~~L~L~~N~l~~--~~~~~~~~~~L~~L~L~~n~l~--~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 261 (405)
+.|++..+.... .+|. .|+.|.+.+++.. ...+. .++.+|++|++++|... .+|..+ ..+|+.|+
T Consensus 115 e~L~L~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN-----GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKL--PESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCcc-----hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcccc--cccCcEEE
Confidence 777776655431 2222 2445554332210 00111 12236666666665543 222222 13566666
Q ss_pred ccCC
Q 045950 262 VGFN 265 (405)
Q Consensus 262 L~~N 265 (405)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 6554
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=3.1e-06 Score=76.54 Aligned_cols=226 Identities=19% Similarity=0.177 Sum_probs=128.7
Q ss_pred CCCCcEEeccCCCCCCcc-chhc-cCCCCCcEEECCCCcCCc--cCchhhhCCCCCcEEeccccccCCCCChhhhccc-c
Q 045950 111 LEDLALFHLNSNRFCGTI-PDSF-RNMRLLFELDVSTNQFSG--CFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-L 185 (405)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L 185 (405)
+..++.|.+.++.|...- ...| ...+.+++|||.+|.|+. .+...+.+|+.|+.|+|+.|++...+...-.... |
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 345556666666665221 1122 345789999999999984 3455678899999999999999744433222333 8
Q ss_pred ceeecCCCCCCCCCCCCc-CC-CCcchhhcccCCCCcCC--chHHHhhcccCcEEEccCCCCCC--CCCccCCCCCCccE
Q 045950 186 DALFINNNKFSSSLPKNI-GN-SPVSVLVLANNNLNSCI--PSSLTKMAGTLNEIILLNTGLTG--CFPQDIGLLNQVTV 259 (405)
Q Consensus 186 ~~L~L~~N~l~~~~~~~~-~~-~~L~~L~L~~n~l~~~~--p~~l~~l~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~ 259 (405)
+.|-|.+..+...-...+ .. +.++.|.++.|.+.... ..........++.|.+..|.... .....-..++++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 888888887753322222 11 34666777766432110 00111111123333333322110 00001123466777
Q ss_pred EEccCCCCCCCC-ccccCCCCCCCEEEeecCcCccc-CchhhcCCCCCCEEEccCCcCCCCCC----------CCCCCCc
Q 045950 260 FDVGFNNLVGPL-PESMGNMKSLEQLNVAHNKLSGA-IPESICRLPKLENFTYSYNFFCSEPL----------TCLNLKD 327 (405)
Q Consensus 260 L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~----------~~~~L~~ 327 (405)
+.+..|.+...- -..+..++.+.-|+|+.|+|.+. -.+.+.++++|..|.+++|.+..... .+.+++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 777777665321 23445567777889999988632 23467788999999999998765432 2345555
Q ss_pred ccCCCCCCCCC
Q 045950 328 KDDRQNCIPNR 338 (405)
Q Consensus 328 L~l~~N~l~~~ 338 (405)
|+=+ .|+..
T Consensus 284 LNGs--kIss~ 292 (418)
T KOG2982|consen 284 LNGS--KISSR 292 (418)
T ss_pred ecCc--ccchh
Confidence 5544 55543
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=5.3e-05 Score=65.03 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=55.0
Q ss_pred cCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCc--hhhcCCCCCCEEE
Q 045950 232 TLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIP--ESICRLPKLENFT 309 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~ 309 (405)
....+||++|.+... ..|..++.|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|.|. .+- +-+..+++|+.|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 555666666666432 34555666677777777776444433334456677777777665 221 2244566667776
Q ss_pred ccCCcCCCCCC-------CCCCCCcccCC
Q 045950 310 YSYNFFCSEPL-------TCLNLKDKDDR 331 (405)
Q Consensus 310 Ls~N~l~~~~~-------~~~~L~~L~l~ 331 (405)
+-+|.++...- .+++|+.||..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehh
Confidence 66666655432 34556666543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=0.00011 Score=70.71 Aligned_cols=131 Identities=21% Similarity=0.326 Sum_probs=82.8
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCC-CCCCccchhccCCCCCcEEECCCC-cCCccCchhhhCCCCCcEE
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSN-RFCGTIPDSFRNMRLLFELDVSTN-QFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L 165 (405)
.+++.|++++|.++ .+|. --.+|+.|.++++ .++ .+|+.+. .+|++|++++| .+. .+|. +|+.|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc------ccceE
Confidence 46789999999887 4452 2346999999874 444 6666553 58999999998 554 4553 57788
Q ss_pred eccccccC--CCCChhhhccccceeecCCCC-CC-CCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCC
Q 045950 166 DIRFNQFE--GDIPSAVFDLKLDALFINNNK-FS-SSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNT 241 (405)
Q Consensus 166 ~Ls~N~i~--~~~p~~~~~~~L~~L~L~~N~-l~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n 241 (405)
+++.+... +.+|.. |+.|.+.+++ .. ..++. .-..+|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 118 ~L~~n~~~~L~~LPss-----Lk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i-~LP~~LP---~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPNG-----LTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNI-ILPEKLP---ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcch-----Hhheecccccccccccccc-ccCCcccEEEecCCCcc-cCccccc---ccCcEEEeccc
Confidence 88776643 133333 6677764432 11 11111 11247899999988865 2443333 38999999876
Q ss_pred C
Q 045950 242 G 242 (405)
Q Consensus 242 ~ 242 (405)
.
T Consensus 188 ~ 188 (426)
T PRK15386 188 Q 188 (426)
T ss_pred c
Confidence 4
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=2.3e-05 Score=81.33 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=64.8
Q ss_pred CchHHHhhcccCcEEEccCCCCCCC-CCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcc-cCchhh
Q 045950 222 IPSSLTKMAGTLNEIILLNTGLTGC-FPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSG-AIPESI 299 (405)
Q Consensus 222 ~p~~l~~l~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l 299 (405)
.+..++.+.++|+.|.+++-.+... .-....++++|..||+++.+++.. ..++++++|++|.+.+=.+.. ..-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 3445555555677776666554321 122334566777777777777632 556667777777666655542 222345
Q ss_pred cCCCCCCEEEccCCcCCCCC----------CCCCCCCcccCCCCCCCC
Q 045950 300 CRLPKLENFTYSYNFFCSEP----------LTCLNLKDKDDRQNCIPN 337 (405)
Q Consensus 300 ~~l~~L~~L~Ls~N~l~~~~----------~~~~~L~~L~l~~N~l~~ 337 (405)
.++++|++||+|..+..... ..+++|+.||.|++.+..
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 56777777777765544332 135567777777665543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=0.00012 Score=62.95 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=76.2
Q ss_pred CcEEEccCCCCCCCCCccCC-CCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEcc
Q 045950 233 LNEIILLNTGLTGCFPQDIG-LLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYS 311 (405)
Q Consensus 233 L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 311 (405)
-+++++.+.++....- ++ -......+||++|.+... ..|..+++|.+|.|.+|+|+.+-|.--..+++|..|.|.
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 4455666655542211 22 234678899999999733 457789999999999999996555554567899999999
Q ss_pred CCcCCCCC-----CCCCCCCcccCCCCCCCCCC
Q 045950 312 YNFFCSEP-----LTCLNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 312 ~N~l~~~~-----~~~~~L~~L~l~~N~l~~~p 339 (405)
+|.|.... ..|+.|++|.+-+|..+...
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhccc
Confidence 99987653 26899999999999887654
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.91 E-value=0.00039 Score=72.40 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=50.8
Q ss_pred cCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCC-CCccccCCCCCCCEEEeecCcCcccC--ch----hhcCCCC
Q 045950 232 TLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVG-PLPESMGNMKSLEQLNVAHNKLSGAI--PE----SICRLPK 304 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~--p~----~l~~l~~ 304 (405)
+|..||+++.+++.. ..++.+++|+.|.+.+=.+.. ..-..+.++++|+.||+|..+..... .. .-..+|+
T Consensus 174 NL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe 251 (699)
T KOG3665|consen 174 NLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE 251 (699)
T ss_pred ccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence 677777777776633 456667777777766655542 11234556777777777766544211 11 1124677
Q ss_pred CCEEEccCCcCCCC
Q 045950 305 LENFTYSYNFFCSE 318 (405)
Q Consensus 305 L~~L~Ls~N~l~~~ 318 (405)
|+.||.|+..++..
T Consensus 252 LrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 252 LRFLDCSGTDINEE 265 (699)
T ss_pred ccEEecCCcchhHH
Confidence 78888777666554
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00064 Score=60.78 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=48.1
Q ss_pred cCcEEEccCCCCCCCCCccCCCCCCccEEEccCC--CCCCCCccccCCCCCCCEEEeecCcCcccCchh---hcCCCCCC
Q 045950 232 TLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFN--NLVGPLPESMGNMKSLEQLNVAHNKLSGAIPES---ICRLPKLE 306 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~ 306 (405)
.|+.|.+.+..++.. ..+-.+++|+.|+++.| ++.+.++.....+++|++|++++|+|+. +.. +..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 455555555554422 23445667777777777 5554444444455777777777777762 222 34456667
Q ss_pred EEEccCCcCCC
Q 045950 307 NFTYSYNFFCS 317 (405)
Q Consensus 307 ~L~Ls~N~l~~ 317 (405)
.||+.+|..+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 77777776655
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=6.3e-05 Score=67.63 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=73.2
Q ss_pred cCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCc--hhhcCCCCCCEEE
Q 045950 232 TLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIP--ESICRLPKLENFT 309 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~ 309 (405)
+.+.|++.++++... .....++.|+.|.|+-|+|+.. ..+..+++|++|+|..|.|. .+. ..+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 677888888888743 2345788999999999999844 34788999999999999998 343 3567899999999
Q ss_pred ccCCcCCCCCC---------CCCCCCccc
Q 045950 310 YSYNFFCSEPL---------TCLNLKDKD 329 (405)
Q Consensus 310 Ls~N~l~~~~~---------~~~~L~~L~ 329 (405)
|..|.-.|..+ .+++|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999887654 366777776
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.82 E-value=0.00082 Score=60.10 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=45.0
Q ss_pred CCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCC--cCCccCchhhhCCCCCcEEeccccccC
Q 045950 104 LPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTN--QFSGCFPSVVLCLPSLKFLDIRFNQFE 173 (405)
Q Consensus 104 ~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~i~ 173 (405)
+....-.+..|+.|++.+..++. + ..|..|++|++|.++.| ++.+.++-....+++|++|++++|+|.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33334445566666676666662 2 23667778888888888 666555555556688888888888876
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.00036 Score=62.85 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=53.4
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCc--hhhhCCCCCcEEe
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFP--SVVLCLPSLKFLD 166 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ 166 (405)
+++.|++-++.+.++ ....+++.|+.|.|+-|+|+...| |..+++|++|+|..|.|.. +. ..+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence 455555556655533 123466777777777777774333 6677777777777777763 22 3456677777777
Q ss_pred ccccccCCCCCh
Q 045950 167 IRFNQFEGDIPS 178 (405)
Q Consensus 167 Ls~N~i~~~~p~ 178 (405)
|..|.-.|.-+.
T Consensus 95 L~ENPCc~~ag~ 106 (388)
T KOG2123|consen 95 LDENPCCGEAGQ 106 (388)
T ss_pred hccCCcccccch
Confidence 777776655443
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.66 E-value=0.0002 Score=71.26 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=44.0
Q ss_pred cCcEEEccCCCCCCCC----CccCCCCCC-ccEEEccCCCCCCC----CccccCCC-CCCCEEEeecCcCcccC----ch
Q 045950 232 TLNEIILLNTGLTGCF----PQDIGLLNQ-VTVFDVGFNNLVGP----LPESMGNM-KSLEQLNVAHNKLSGAI----PE 297 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~----p~~~~~l~~-L~~L~L~~N~l~~~----~p~~~~~l-~~L~~L~L~~N~l~~~~----p~ 297 (405)
++++|.+.++.++... ...+...+. +..|++..|.+.+. +...+..+ ..+++++++.|.|++.- .+
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 5556666665554211 112223333 45566666666533 12223333 45566677777665432 23
Q ss_pred hhcCCCCCCEEEccCCcCCC
Q 045950 298 SICRLPKLENFTYSYNFFCS 317 (405)
Q Consensus 298 ~l~~l~~L~~L~Ls~N~l~~ 317 (405)
.+...++++++.+++|.+..
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHhhhHHHHHhhcccCcccc
Confidence 34445566666666666654
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.47 E-value=0.027 Score=45.39 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=35.7
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
+++.+.+.. .+...-...|..+++|+.+.+.++ +...-...|.++..|+.+.+.+ .+.......|..+.+|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 555666553 344444455666666666666554 4433444555665666666654 3332333445556666666665
Q ss_pred cc
Q 045950 169 FN 170 (405)
Q Consensus 169 ~N 170 (405)
.+
T Consensus 90 ~~ 91 (129)
T PF13306_consen 90 SN 91 (129)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.35 E-value=0.052 Score=43.65 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=58.7
Q ss_pred ccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCCh-hhhccc
Q 045950 106 EELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPS-AVFDLK 184 (405)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~-~~~~~~ 184 (405)
..|.+.++|+.+.+.. .+...-...|..+.+|+.+.+.++ +.......|.++.+|+.+.+.+ .+. .++. .+....
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 4577788899999875 566555667888888999999875 6655566788887899999975 443 3333 344344
Q ss_pred -cceeecCCCCCCCCCCCCcCCCCcchhhccc
Q 045950 185 -LDALFINNNKFSSSLPKNIGNSPVSVLVLAN 215 (405)
Q Consensus 185 -L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~ 215 (405)
|+.+.+..+ +.......+...+++.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNCNLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT-T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCCCceEEEECC
Confidence 888888765 443344455555677776654
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.33 E-value=0.007 Score=32.61 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=8.0
Q ss_pred CcEEECCCCcCCccCchhh
Q 045950 138 LFELDVSTNQFSGCFPSVV 156 (405)
Q Consensus 138 L~~L~Ls~N~l~~~~p~~l 156 (405)
|++||+++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344333
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.31 E-value=0.0072 Score=32.57 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=9.0
Q ss_pred CCEEEeecCcCcccCchhh
Q 045950 281 LEQLNVAHNKLSGAIPESI 299 (405)
Q Consensus 281 L~~L~L~~N~l~~~~p~~l 299 (405)
|++|+|++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444443
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.30 E-value=0.00044 Score=60.75 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=73.9
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
...+++.||++.|++. .+-..|+.++.|..|+++.|.+. ..|..+.++..++.+++..|..+ ..|.+++..+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 4568999999999887 33456778889999999999998 78888999999999999999998 889999999999999
Q ss_pred eccccccC
Q 045950 166 DIRFNQFE 173 (405)
Q Consensus 166 ~Ls~N~i~ 173 (405)
++..|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99998865
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.09 E-value=0.00012 Score=72.88 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCcchhhcccCCCCcCC----chHHHhhcccCcEEEccCCCCCCC----CCccCCCC-CCccEEEccCCCCCCCC----c
Q 045950 206 SPVSVLVLANNNLNSCI----PSSLTKMAGTLNEIILLNTGLTGC----FPQDIGLL-NQVTVFDVGFNNLVGPL----P 272 (405)
Q Consensus 206 ~~L~~L~L~~n~l~~~~----p~~l~~l~~~L~~L~l~~n~l~~~----~p~~~~~l-~~L~~L~L~~N~l~~~~----p 272 (405)
.++++|.+.++.++... ...+......+.+|++.+|.+... +...+..+ ..++.++++.|.|+... .
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 44777777777765321 122333332367789999988643 23344555 67899999999998543 3
Q ss_pred cccCCCCCCCEEEeecCcCcccCch----hhcCCCCCCEEEccCCcC
Q 045950 273 ESMGNMKSLEQLNVAHNKLSGAIPE----SICRLPKLENFTYSYNFF 315 (405)
Q Consensus 273 ~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l 315 (405)
..+..+..++++.++.|.+.+.... .+.....+..+-+.++..
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred HHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence 4456678899999999998753222 223334455555554443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.97 E-value=0.0019 Score=56.83 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=71.5
Q ss_pred ccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-
Q 045950 106 EELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK- 184 (405)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~- 184 (405)
.++......+.||++.|++. .+-..|+.++.|..||++.|++. ..|..++.+..+..+++..|..+ ..|..+...+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 44666788888999998877 45556777888889999999988 78888888888888898888887 7888888777
Q ss_pred cceeecCCCCCC
Q 045950 185 LDALFINNNKFS 196 (405)
Q Consensus 185 L~~L~L~~N~l~ 196 (405)
++++++-.|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888887764
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.97 E-value=0.069 Score=26.70 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=3.4
Q ss_pred CCEEEeecCcC
Q 045950 281 LEQLNVAHNKL 291 (405)
Q Consensus 281 L~~L~L~~N~l 291 (405)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.50 E-value=0.17 Score=28.21 Aligned_cols=14 Identities=43% Similarity=0.672 Sum_probs=6.9
Q ss_pred CCCcEEeccccccC
Q 045950 160 PSLKFLDIRFNQFE 173 (405)
Q Consensus 160 ~~L~~L~Ls~N~i~ 173 (405)
++|++|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.50 E-value=0.17 Score=28.21 Aligned_cols=14 Identities=43% Similarity=0.672 Sum_probs=6.9
Q ss_pred CCCcEEeccccccC
Q 045950 160 PSLKFLDIRFNQFE 173 (405)
Q Consensus 160 ~~L~~L~Ls~N~i~ 173 (405)
++|++|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.81 E-value=0.044 Score=54.77 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=8.2
Q ss_pred CCCCCCCEEEeecCc
Q 045950 276 GNMKSLEQLNVAHNK 290 (405)
Q Consensus 276 ~~l~~L~~L~L~~N~ 290 (405)
..+++++.+.+.++.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 445555555555555
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.48 E-value=0.55 Score=26.07 Aligned_cols=14 Identities=57% Similarity=0.581 Sum_probs=7.3
Q ss_pred CCCcEEECCCCcCC
Q 045950 136 RLLFELDVSTNQFS 149 (405)
Q Consensus 136 ~~L~~L~Ls~N~l~ 149 (405)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.48 E-value=0.55 Score=26.07 Aligned_cols=14 Identities=57% Similarity=0.581 Sum_probs=7.3
Q ss_pred CCCcEEECCCCcCC
Q 045950 136 RLLFELDVSTNQFS 149 (405)
Q Consensus 136 ~~L~~L~Ls~N~l~ 149 (405)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.85 E-value=0.16 Score=27.74 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=7.5
Q ss_pred CCCCEEEeecCcCccc
Q 045950 279 KSLEQLNVAHNKLSGA 294 (405)
Q Consensus 279 ~~L~~L~L~~N~l~~~ 294 (405)
++|++|+|++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555543
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.68 E-value=0.074 Score=46.09 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=18.8
Q ss_pred CCCCEEEeecC-cCcccCchhhcCCCCCCEEEccC
Q 045950 279 KSLEQLNVAHN-KLSGAIPESICRLPKLENFTYSY 312 (405)
Q Consensus 279 ~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~ 312 (405)
++|+.|++++| +|++.--..+..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 45666666655 55544444555556666555554
No 82
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=82.17 E-value=0.87 Score=34.68 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=15.5
Q ss_pred CCCchHHHHHHHHHHHHHHhcCC
Q 045950 1 MKSPSLNLALWGMLCVIFLCSEP 23 (405)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (405)
|-++.+.||.+++.++++++|++
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 77888666666665666666666
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.41 E-value=0.41 Score=41.62 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=52.8
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCc-cchhcc-CCCCCcEEECCCC-cCCccCchhhhCCCCCcEE
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGT-IPDSFR-NMRLLFELDVSTN-QFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L 165 (405)
.++.+|-++..|.+.--+.+..++.++.|.+.+++--+. --+.++ -.++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 578888888888776666677788888888877653211 111111 2467888888865 4664444556677777777
Q ss_pred eccc
Q 045950 166 DIRF 169 (405)
Q Consensus 166 ~Ls~ 169 (405)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7754
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.85 E-value=1.8 Score=24.25 Aligned_cols=14 Identities=43% Similarity=0.468 Sum_probs=8.0
Q ss_pred CCCcEEECCCCcCC
Q 045950 136 RLLFELDVSTNQFS 149 (405)
Q Consensus 136 ~~L~~L~Ls~N~l~ 149 (405)
.+|++|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45556666666554
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.55 E-value=1.6 Score=24.46 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=11.5
Q ss_pred CCCcccCCCCCCCCCCC
Q 045950 324 NLKDKDDRQNCIPNRPL 340 (405)
Q Consensus 324 ~L~~L~l~~N~l~~~p~ 340 (405)
+|+.|++++|+|+.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46667777777777764
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=73.85 E-value=2.3 Score=42.38 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=62.0
Q ss_pred cceeecCCCCCCCC---CCCCcCCCCcchhhcccC-CCCcCCc---hHHHhhcccCcEEEccCCC-CCCCCCccCC-CCC
Q 045950 185 LDALFINNNKFSSS---LPKNIGNSPVSVLVLANN-NLNSCIP---SSLTKMAGTLNEIILLNTG-LTGCFPQDIG-LLN 255 (405)
Q Consensus 185 L~~L~L~~N~l~~~---~~~~~~~~~L~~L~L~~n-~l~~~~p---~~l~~l~~~L~~L~l~~n~-l~~~~p~~~~-~l~ 255 (405)
|+.|.+..+.-... .+.......|+.|+++++ ......+ ..+.....+|+.|+++.+. ++...-..+. .++
T Consensus 190 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~ 269 (482)
T KOG1947|consen 190 LKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCP 269 (482)
T ss_pred hhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCC
Confidence 66666665532211 122223356777777762 1111111 1222222477777777776 4432222222 256
Q ss_pred CccEEEccCCC-CCCCCc-cccCCCCCCCEEEeecCcCc-cc-CchhhcCCCCCCEEEc
Q 045950 256 QVTVFDVGFNN-LVGPLP-ESMGNMKSLEQLNVAHNKLS-GA-IPESICRLPKLENFTY 310 (405)
Q Consensus 256 ~L~~L~L~~N~-l~~~~p-~~~~~l~~L~~L~L~~N~l~-~~-~p~~l~~l~~L~~L~L 310 (405)
+|+.|.+.++. +++..- .....+++|++|+++++... +. +.....++++|+.|.+
T Consensus 270 ~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 270 NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 77777766665 443221 22345677888888877543 11 2222334555555443
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.81 E-value=10 Score=37.51 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=25.8
Q ss_pred CCEEEeecCcCcccCch---hhcCCCCCCEEEccCCcCCCC
Q 045950 281 LEQLNVAHNKLSGAIPE---SICRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 281 L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~ 318 (405)
+..+.++.|.+....-. .+..-+.+..||+++|.....
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~ 455 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDG 455 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccC
Confidence 56777888877633222 234557899999999986644
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.34 E-value=3.7 Score=23.33 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=8.9
Q ss_pred CCCCEEEccCCcCC
Q 045950 303 PKLENFTYSYNFFC 316 (405)
Q Consensus 303 ~~L~~L~Ls~N~l~ 316 (405)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.31 E-value=6.9 Score=39.33 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=34.1
Q ss_pred cCcEEEccCCCCCCCC--CccCCCCCCccEEEccCC--CCCCCCccccCCC--CCCCEEEeecCcCcc
Q 045950 232 TLNEIILLNTGLTGCF--PQDIGLLNQVTVFDVGFN--NLVGPLPESMGNM--KSLEQLNVAHNKLSG 293 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~--p~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~l--~~L~~L~L~~N~l~~ 293 (405)
.+..+.|++|++.... ...-...++|..|+|++| .+.. -.++.++ ..|++|-+.+|.+..
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 5667778888765321 111233567788888887 3331 1222222 346778888887754
No 90
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=53.28 E-value=15 Score=22.31 Aligned_cols=13 Identities=46% Similarity=0.445 Sum_probs=8.3
Q ss_pred CCCchHHHHHHHH
Q 045950 1 MKSPSLNLALWGM 13 (405)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (405)
||..++.++++++
T Consensus 1 Mk~l~~a~~l~lL 13 (36)
T PF08194_consen 1 MKCLSLAFALLLL 13 (36)
T ss_pred CceeHHHHHHHHH
Confidence 8888875554444
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.99 E-value=9.5 Score=38.37 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=16.2
Q ss_pred CCCCcEEECCCCcCCccC--chhhhCCCCCcEEecccc
Q 045950 135 MRLLFELDVSTNQFSGCF--PSVVLCLPSLKFLDIRFN 170 (405)
Q Consensus 135 l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N 170 (405)
.+.+..+.|++|++...- ...-...++|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555555554210 011122345556666655
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=47.67 E-value=9.2 Score=37.18 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=47.8
Q ss_pred CcEEEEECCCCCCcccCC--ccccCCCCCcEEeccCCC-CCCccchhc-cCCCCCcEEECCC-CcCCccCch-hhhCCCC
Q 045950 88 LTVAGIDLNHANIAGTLP--EELGLLEDLALFHLNSNR-FCGTIPDSF-RNMRLLFELDVST-NQFSGCFPS-VVLCLPS 161 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~p~-~l~~l~~ 161 (405)
..++.|.+.+..-.+.-+ ..-.+.++++.|.+.++. ++...-.++ ..+++|++|++.. -.|+...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 456777777765443311 223456777777777765 332222222 3467788888877 334432222 2345778
Q ss_pred CcEEeccccc
Q 045950 162 LKFLDIRFNQ 171 (405)
Q Consensus 162 L~~L~Ls~N~ 171 (405)
|++|+++.+.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 8888888754
No 93
>PF07263 DMP1: Dentin matrix protein 1 (DMP1); InterPro: IPR009889 This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21 []. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca2+ surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation []. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown [].; GO: 0001503 ossification, 0030198 extracellular matrix organization
Probab=44.06 E-value=11 Score=36.94 Aligned_cols=17 Identities=41% Similarity=0.960 Sum_probs=14.6
Q ss_pred CCCchHHHHHHHHHHHH
Q 045950 1 MKSPSLNLALWGMLCVI 17 (405)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (405)
||+.+|+|+||++-|++
T Consensus 1 mktsill~~lwgls~al 17 (514)
T PF07263_consen 1 MKTSILLMFLWGLSCAL 17 (514)
T ss_pred CcceeHHHHHHHhhccc
Confidence 99999999999985544
No 94
>PF11921 DUF3439: Domain of unknown function (DUF3439); InterPro: IPR024592 This uncharacterised C-terminal domain is found in variable lymphocyte receptor proteins. VLR are proteins consisting of leucine-rich repeats (LRR) that are assembled into functional receptors through somatic diversification of the incomplete germ-line VLR gene in lamprey and hagfish []. ; PDB: 3RFJ_A 3G3B_A 2R9U_C 2O6S_A 3A79_B 3RFS_A 2O6R_A 3V47_B 3V44_A 3A7C_A ....
Probab=41.24 E-value=6.8 Score=29.96 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 045950 355 VDCGAFGCSPRSPPPPPPSAS 375 (405)
Q Consensus 355 ~~C~~~~c~~~~~~~~~~~~~ 375 (405)
.+-|+.+|++...|+++-+-+
T Consensus 26 v~PDSAKCSGTntPVRAVtcP 46 (122)
T PF11921_consen 26 VDPDSAKCSGTNTPVRAVTCP 46 (122)
T ss_dssp B-TTGSBBTTT-SBGGG--GG
T ss_pred cCCCccccCCCCCcceeEecc
Confidence 345667899999888887633
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=40.31 E-value=29 Score=34.44 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=12.3
Q ss_pred CCCEEEccCCcCCCCC
Q 045950 304 KLENFTYSYNFFCSEP 319 (405)
Q Consensus 304 ~L~~L~Ls~N~l~~~~ 319 (405)
.+++|+.+.|.+.+..
T Consensus 355 R~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEG 370 (553)
T ss_pred eeeEeecccccccccc
Confidence 4888888888887653
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.94 E-value=20 Score=43.29 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=22.7
Q ss_pred EccCCCCCCCCccccCCCCCCCEEEeecCcCc
Q 045950 261 DVGFNNLVGPLPESMGNMKSLEQLNVAHNKLS 292 (405)
Q Consensus 261 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 292 (405)
||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 56777777555556777777788888777664
No 97
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=35.44 E-value=16 Score=35.66 Aligned_cols=245 Identities=16% Similarity=0.093 Sum_probs=134.6
Q ss_pred CCcEEEEECCCCCC-cccCCccc-cCCCCCcEEeccCC-CCCCccch-hccCCCCCcEEECCCCc-CCcc-CchhhhCCC
Q 045950 87 SLTVAGIDLNHANI-AGTLPEEL-GLLEDLALFHLNSN-RFCGTIPD-SFRNMRLLFELDVSTNQ-FSGC-FPSVVLCLP 160 (405)
Q Consensus 87 ~~~l~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~ 160 (405)
-++++.|++.++.. +...-..+ ....+|+.|++..+ .|+...-. --..+++|++|+++++. |++. +-..+.+..
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~ 242 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK 242 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccch
Confidence 45666666666542 21111112 24567888888773 34433222 22357788888888754 3321 112344555
Q ss_pred CCcEEeccccccCCCCChhhhcc----c-cceeecCCC-CCCCCCCCCc--CCCCcchhhcccCC-CCcCCchHHHhhcc
Q 045950 161 SLKFLDIRFNQFEGDIPSAVFDL----K-LDALFINNN-KFSSSLPKNI--GNSPVSVLVLANNN-LNSCIPSSLTKMAG 231 (405)
Q Consensus 161 ~L~~L~Ls~N~i~~~~p~~~~~~----~-L~~L~L~~N-~l~~~~~~~~--~~~~L~~L~L~~n~-l~~~~p~~l~~l~~ 231 (405)
.++.+.+.++.=. --+.+... . +.++++..+ .++...--.+ +...++.|+.++.. +....-..+++-..
T Consensus 243 ~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 243 ELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred hhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 6666666543211 11112111 1 445554444 3332211111 22457888887755 34344456666556
Q ss_pred cCcEEEccCCCC-CCCCCccC-CCCCCccEEEccCCCCCC--CCccccCCCCCCCEEEeecCcC-cccC----chhhcCC
Q 045950 232 TLNEIILLNTGL-TGCFPQDI-GLLNQVTVFDVGFNNLVG--PLPESMGNMKSLEQLNVAHNKL-SGAI----PESICRL 302 (405)
Q Consensus 232 ~L~~L~l~~n~l-~~~~p~~~-~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l-~~~~----p~~l~~l 302 (405)
+|+.|.++.++. +..--..+ .+.+.|+.+++..+.... .+..--.+++.|++|.|+++.. +++. ...-..+
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 899999998873 21111111 356789999998876641 1222235678999999998854 3221 1222456
Q ss_pred CCCCEEEccCCcCCCCC-----CCCCCCCcccCCCC
Q 045950 303 PKLENFTYSYNFFCSEP-----LTCLNLKDKDDRQN 333 (405)
Q Consensus 303 ~~L~~L~Ls~N~l~~~~-----~~~~~L~~L~l~~N 333 (405)
..|+.+.|++....... ..|.+|+.+++-+.
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 77888999988765432 25778888777654
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.39 E-value=36 Score=41.22 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=28.9
Q ss_pred eccCCCCCCccchhccCCCCCcEEECCCCcCCc
Q 045950 118 HLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSG 150 (405)
Q Consensus 118 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 150 (405)
||++|+|+...+..|..+.+|++|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999997777789999999999999998873
No 99
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.24 E-value=50 Score=18.00 Aligned_cols=11 Identities=45% Similarity=0.314 Sum_probs=5.8
Q ss_pred CCCcEEECCCC
Q 045950 136 RLLFELDVSTN 146 (405)
Q Consensus 136 ~~L~~L~Ls~N 146 (405)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
Done!