Query 045950
Match_columns 405
No_of_seqs 492 out of 4352
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 12:21:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 7E-43 2.4E-47 330.2 18.8 293 39-339 3-308 (313)
2 4eco_A Uncharacterized protein 100.0 4.6E-39 1.6E-43 332.1 15.1 270 37-318 25-417 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 3E-37 1E-41 325.7 18.1 309 36-356 263-710 (876)
4 3rgz_A Protein brassinosteroid 100.0 5E-37 1.7E-41 323.6 17.7 291 38-341 8-362 (768)
5 3rgz_A Protein brassinosteroid 100.0 1.3E-36 4.5E-41 320.5 19.8 272 87-359 393-743 (768)
6 4fcg_A Uncharacterized protein 100.0 8.8E-36 3E-40 283.3 13.9 276 36-317 21-315 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 2.5E-34 8.6E-39 285.0 23.4 272 88-359 30-411 (455)
8 2id5_A Lingo-1, leucine rich r 100.0 2.6E-32 8.9E-37 272.3 23.4 284 73-358 13-335 (477)
9 3v47_A TOLL-like receptor 5B a 100.0 4.4E-32 1.5E-36 268.9 21.0 256 86-342 77-414 (455)
10 1ogq_A PGIP-2, polygalacturona 100.0 1E-32 3.6E-37 260.4 11.7 246 112-359 50-307 (313)
11 3oja_B Anopheles plasmodium-re 100.0 1.5E-31 5.1E-36 274.2 17.9 268 88-359 51-361 (597)
12 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-30 7.1E-35 246.6 22.6 260 70-337 32-308 (332)
13 3o6n_A APL1; leucine-rich repe 100.0 3.2E-31 1.1E-35 257.7 17.3 268 88-359 45-355 (390)
14 4g8a_A TOLL-like receptor 4; l 100.0 3.7E-30 1.3E-34 264.7 24.0 273 87-359 51-583 (635)
15 3t6q_A CD180 antigen; protein- 100.0 9.7E-31 3.3E-35 268.5 18.8 268 88-358 278-562 (606)
16 1xku_A Decorin; proteoglycan, 100.0 5.6E-30 1.9E-34 243.3 22.7 262 69-338 29-308 (330)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.6E-30 1.6E-34 261.4 23.1 127 232-358 354-512 (562)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-30 6.3E-35 261.7 18.6 127 232-358 325-483 (520)
19 3o6n_A APL1; leucine-rich repe 100.0 3.6E-30 1.2E-34 250.3 19.9 268 87-359 68-377 (390)
20 4eco_A Uncharacterized protein 100.0 6.6E-31 2.2E-35 271.2 15.3 266 85-356 203-526 (636)
21 3vq2_A TLR4, TOLL-like recepto 100.0 5E-30 1.7E-34 263.2 20.9 128 232-359 425-561 (606)
22 3t6q_A CD180 antigen; protein- 100.0 1.5E-29 5.1E-34 259.7 24.4 250 87-338 32-365 (606)
23 1xku_A Decorin; proteoglycan, 100.0 2.5E-29 8.7E-34 238.8 22.6 260 89-357 32-307 (330)
24 2z66_A Variable lymphocyte rec 100.0 4.2E-30 1.4E-34 241.6 16.9 246 70-317 6-262 (306)
25 2z80_A TOLL-like receptor 2, v 100.0 5.7E-31 2E-35 252.5 11.2 251 87-339 51-317 (353)
26 2z81_A CD282 antigen, TOLL-lik 100.0 7.4E-30 2.5E-34 258.8 19.5 149 70-220 3-162 (549)
27 2id5_A Lingo-1, leucine rich r 100.0 3.7E-30 1.3E-34 256.7 16.9 251 86-337 54-334 (477)
28 3oja_B Anopheles plasmodium-re 100.0 1.1E-29 3.9E-34 260.2 19.8 268 87-359 74-383 (597)
29 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-29 8.3E-34 239.2 20.0 259 89-357 34-308 (332)
30 3zyj_A Leucine-rich repeat-con 100.0 7.4E-29 2.5E-33 245.0 21.7 228 87-317 63-293 (440)
31 1ziw_A TOLL-like receptor 3; i 100.0 6.3E-29 2.1E-33 258.5 22.2 273 86-359 327-625 (680)
32 3j0a_A TOLL-like receptor 5; m 100.0 9.5E-29 3.3E-33 263.1 23.9 252 87-339 23-354 (844)
33 3zyi_A Leucine-rich repeat-con 100.0 4.9E-29 1.7E-33 247.1 19.0 228 87-317 74-304 (452)
34 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-28 5.2E-33 261.5 24.1 255 86-340 71-379 (844)
35 2z66_A Variable lymphocyte rec 100.0 8.3E-29 2.8E-33 232.7 17.7 243 91-338 10-263 (306)
36 4fcg_A Uncharacterized protein 100.0 1.1E-28 3.6E-33 234.4 18.2 224 110-339 79-317 (328)
37 2z81_A CD282 antigen, TOLL-lik 100.0 9.4E-29 3.2E-33 250.7 18.9 111 86-196 48-161 (549)
38 2z80_A TOLL-like receptor 2, v 100.0 7E-29 2.4E-33 238.0 16.5 270 68-359 27-317 (353)
39 4ecn_A Leucine-rich repeat pro 100.0 6.4E-28 2.2E-32 254.6 24.7 259 89-357 549-841 (876)
40 3zyi_A Leucine-rich repeat-con 100.0 4.3E-28 1.5E-32 240.3 21.7 239 92-336 58-303 (452)
41 1ziw_A TOLL-like receptor 3; i 100.0 8.9E-28 3.1E-32 249.8 24.7 251 88-339 25-345 (680)
42 3zyj_A Leucine-rich repeat-con 100.0 8.4E-28 2.9E-32 237.4 21.7 239 92-336 47-292 (440)
43 2z63_A TOLL-like receptor 4, v 100.0 4.6E-28 1.6E-32 246.5 20.3 127 232-358 397-533 (570)
44 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-27 4.6E-32 222.2 20.7 225 91-319 14-241 (285)
45 1wwl_A Monocyte differentiatio 100.0 2.4E-30 8.1E-35 244.1 0.9 243 87-338 42-311 (312)
46 2z7x_B TOLL-like receptor 1, v 100.0 1E-27 3.4E-32 241.7 19.7 266 88-356 21-434 (520)
47 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-27 4.6E-32 245.1 20.3 144 87-230 31-177 (606)
48 2o6q_A Variable lymphocyte rec 100.0 4.7E-27 1.6E-31 216.9 21.4 219 68-319 2-221 (270)
49 1ozn_A Reticulon 4 receptor; N 100.0 6E-28 2E-32 224.5 15.1 233 86-320 30-265 (285)
50 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-27 1.6E-31 239.1 23.1 104 232-338 404-512 (562)
51 2z63_A TOLL-like receptor 4, v 99.9 1.3E-26 4.5E-31 235.8 20.7 177 87-265 27-210 (570)
52 4fmz_A Internalin; leucine ric 99.9 7.8E-26 2.7E-30 216.0 24.4 254 86-354 64-344 (347)
53 4fmz_A Internalin; leucine ric 99.9 3.5E-26 1.2E-30 218.4 21.9 239 85-337 85-347 (347)
54 3o53_A Protein LRIM1, AGAP0063 99.9 1E-27 3.6E-32 226.5 11.0 236 89-336 11-250 (317)
55 4g8a_A TOLL-like receptor 4; l 99.9 3E-26 1E-30 235.6 21.8 252 85-337 73-581 (635)
56 1o6v_A Internalin A; bacterial 99.9 9.3E-26 3.2E-30 224.4 23.4 239 86-339 66-347 (466)
57 1wwl_A Monocyte differentiatio 99.9 9.5E-28 3.3E-32 226.3 7.0 223 89-318 64-311 (312)
58 1jl5_A Outer protein YOPM; leu 99.9 1E-26 3.5E-31 230.3 13.8 251 86-355 9-289 (454)
59 1o6v_A Internalin A; bacterial 99.9 2.7E-25 9.1E-30 221.1 23.2 257 86-358 88-390 (466)
60 3bz5_A Internalin-J, INLJ; leu 99.9 8.5E-25 2.9E-29 216.7 25.5 208 88-320 42-250 (457)
61 2z62_A TOLL-like receptor 4, v 99.9 1.8E-25 6.3E-30 206.7 18.5 207 89-319 29-240 (276)
62 3oja_A Leucine-rich immune mol 99.9 2.1E-26 7.1E-31 230.2 12.9 212 113-336 35-250 (487)
63 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-26 1.2E-30 215.9 11.8 233 87-333 33-272 (317)
64 3bz5_A Internalin-J, INLJ; leu 99.9 8.8E-25 3E-29 216.6 22.2 188 85-295 61-249 (457)
65 1jl5_A Outer protein YOPM; leu 99.9 2.9E-24 1E-28 212.6 24.6 55 303-357 317-371 (454)
66 3oja_A Leucine-rich immune mol 99.9 8E-26 2.7E-30 225.9 13.1 231 87-331 33-270 (487)
67 1p9a_G Platelet glycoprotein I 99.9 2.2E-24 7.6E-29 201.0 21.3 201 87-318 9-210 (290)
68 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5.1E-29 200.6 19.7 186 85-295 49-240 (276)
69 3m19_A Variable lymphocyte rec 99.9 1.2E-24 4E-29 198.6 18.5 193 69-319 3-195 (251)
70 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-24 1.2E-28 219.1 19.6 235 90-357 42-298 (622)
71 3goz_A Leucine-rich repeat-con 99.9 9.9E-26 3.4E-30 216.9 5.8 246 93-338 3-299 (362)
72 3rfs_A Internalin B, repeat mo 99.9 1.3E-24 4.5E-29 200.7 10.6 216 90-338 21-237 (272)
73 2o6q_A Variable lymphocyte rec 99.9 5E-23 1.7E-27 189.8 21.2 198 113-338 17-220 (270)
74 3rfs_A Internalin B, repeat mo 99.9 9.8E-24 3.3E-28 194.8 15.8 200 87-321 40-240 (272)
75 1p9a_G Platelet glycoprotein I 99.9 3.5E-23 1.2E-27 192.9 19.4 178 87-292 30-208 (290)
76 2xwt_C Thyrotropin receptor; s 99.9 1.1E-23 3.8E-28 190.6 14.9 194 113-333 32-236 (239)
77 4glp_A Monocyte differentiatio 99.9 6.2E-24 2.1E-28 199.9 13.4 224 87-317 63-308 (310)
78 4glp_A Monocyte differentiatio 99.9 4E-24 1.4E-28 201.2 10.5 221 112-337 64-308 (310)
79 2ca6_A RAN GTPase-activating p 99.9 2.3E-25 7.9E-30 216.1 0.3 231 88-319 32-319 (386)
80 3goz_A Leucine-rich repeat-con 99.9 3.1E-24 1E-28 206.4 7.8 231 87-318 21-299 (362)
81 1h6u_A Internalin H; cell adhe 99.9 1E-22 3.6E-27 191.4 15.9 193 88-320 41-234 (308)
82 2ast_B S-phase kinase-associat 99.9 5E-25 1.7E-29 209.3 -0.0 257 71-339 37-309 (336)
83 2ca6_A RAN GTPase-activating p 99.9 1E-24 3.5E-29 211.5 1.3 236 103-339 23-319 (386)
84 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-21 6E-26 199.1 23.5 219 88-338 61-299 (622)
85 1h6u_A Internalin H; cell adhe 99.9 1.3E-22 4.3E-27 190.8 13.1 210 93-342 24-236 (308)
86 1z7x_W Ribonuclease inhibitor; 99.9 3.2E-25 1.1E-29 219.8 -5.1 228 89-317 86-355 (461)
87 3cvr_A Invasion plasmid antige 99.9 1.8E-22 6.1E-27 204.1 12.4 196 72-302 49-253 (571)
88 1z7x_W Ribonuclease inhibitor; 99.9 1E-24 3.5E-29 216.1 -4.2 252 86-338 111-413 (461)
89 2ast_B S-phase kinase-associat 99.9 5.5E-23 1.9E-27 195.2 5.4 230 88-322 70-312 (336)
90 4ay9_X Follicle-stimulating ho 99.9 7E-22 2.4E-26 189.1 11.2 236 71-314 9-257 (350)
91 3m19_A Variable lymphocyte rec 99.9 7.1E-21 2.4E-25 173.4 17.0 176 137-339 15-195 (251)
92 2o6s_A Variable lymphocyte rec 99.9 2.7E-21 9.1E-26 171.1 13.3 180 70-280 6-190 (208)
93 3cvr_A Invasion plasmid antige 99.9 5.6E-21 1.9E-25 193.2 16.1 181 113-320 60-247 (571)
94 2xwt_C Thyrotropin receptor; s 99.8 5.8E-21 2E-25 172.6 12.3 179 136-341 31-223 (239)
95 4ay9_X Follicle-stimulating ho 99.8 1.8E-20 6.2E-25 179.2 14.8 234 92-333 13-256 (350)
96 3e6j_A Variable lymphocyte rec 99.8 1.2E-19 4E-24 163.1 17.1 164 63-294 11-174 (229)
97 1h6t_A Internalin B; cell adhe 99.8 6.3E-20 2.2E-24 170.9 15.5 171 110-318 44-215 (291)
98 2o6s_A Variable lymphocyte rec 99.8 4.2E-20 1.4E-24 163.3 13.4 180 91-304 10-190 (208)
99 1m9s_A Internalin B; cell inva 99.8 2.1E-19 7.3E-24 183.3 14.5 188 92-319 25-213 (605)
100 1h6t_A Internalin B; cell adhe 99.8 5.8E-19 2E-23 164.4 15.5 169 87-293 45-214 (291)
101 2xot_A Amphoterin-induced prot 99.8 4.7E-19 1.6E-23 170.1 13.9 176 92-317 22-203 (361)
102 4b8c_D Glucose-repressible alc 99.8 6.2E-21 2.1E-25 199.1 0.5 196 40-249 130-334 (727)
103 1dce_A Protein (RAB geranylger 99.8 3.3E-21 1.1E-25 195.5 -3.4 190 109-320 346-550 (567)
104 1m9s_A Internalin B; cell inva 99.8 2E-19 6.9E-24 183.5 9.7 193 111-341 20-215 (605)
105 2v9t_B SLIT homolog 2 protein 99.8 3E-18 1E-22 152.9 15.7 151 92-292 15-165 (220)
106 2v9t_B SLIT homolog 2 protein 99.8 1.8E-18 6.1E-23 154.4 13.4 152 139-317 14-166 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 4.2E-23 155.4 12.3 154 139-319 14-169 (220)
108 2xot_A Amphoterin-induced prot 99.8 7.1E-19 2.4E-23 168.9 11.5 173 162-337 20-203 (361)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 6.5E-18 2.2E-22 150.7 15.3 153 92-294 15-168 (220)
110 3e6j_A Variable lymphocyte rec 99.8 8.4E-18 2.9E-22 150.9 15.0 153 138-318 21-174 (229)
111 1xeu_A Internalin C; cellular 99.8 8.3E-19 2.8E-23 160.9 8.4 165 113-292 20-185 (263)
112 4ezg_A Putative uncharacterize 99.7 3.9E-18 1.3E-22 149.4 10.5 152 133-316 41-194 (197)
113 1dce_A Protein (RAB geranylger 99.7 2.1E-20 7.2E-25 189.6 -5.7 187 133-342 346-552 (567)
114 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.9E-22 146.4 11.7 149 89-292 45-194 (197)
115 3ogk_B Coronatine-insensitive 99.7 7.3E-20 2.5E-24 186.9 -3.3 133 206-339 378-529 (592)
116 1xeu_A Internalin C; cellular 99.7 3E-18 1E-22 157.2 7.3 169 88-270 19-187 (263)
117 1w8a_A SLIT protein; signaling 99.7 1.5E-17 5.1E-22 145.1 10.8 170 187-359 12-186 (192)
118 4b8c_D Glucose-repressible alc 99.7 4.2E-18 1.4E-22 177.8 7.7 180 103-292 215-404 (727)
119 3ogk_B Coronatine-insensitive 99.7 3.2E-19 1.1E-23 182.2 -4.3 268 88-357 164-527 (592)
120 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.6E-21 139.7 8.5 127 92-221 12-141 (192)
121 2ell_A Acidic leucine-rich nuc 99.7 2.3E-16 7.8E-21 134.3 10.0 132 207-341 25-165 (168)
122 2wfh_A SLIT homolog 2 protein 99.6 1.7E-15 5.8E-20 132.1 13.4 110 207-318 32-141 (193)
123 2o6r_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 128.1 13.4 111 208-319 30-140 (177)
124 2o6r_A Variable lymphocyte rec 99.6 2.5E-15 8.6E-20 129.0 12.3 110 112-221 28-139 (177)
125 2ell_A Acidic leucine-rich nuc 99.6 2.5E-15 8.4E-20 127.9 11.6 134 136-318 24-162 (168)
126 2wfh_A SLIT homolog 2 protein 99.6 4.3E-15 1.5E-19 129.6 10.7 124 209-337 13-140 (193)
127 2je0_A Acidic leucine-rich nuc 99.6 4.5E-15 1.5E-19 123.6 10.2 107 88-196 17-126 (149)
128 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.1E-20 125.3 8.2 84 111-196 16-101 (149)
129 2p1m_B Transport inhibitor res 99.6 6.1E-17 2.1E-21 165.2 -3.0 201 134-337 287-520 (594)
130 1ds9_A Outer arm dynein; leuci 99.5 8.9E-17 3E-21 140.8 -4.1 86 108-196 14-106 (198)
131 1ds9_A Outer arm dynein; leuci 99.5 1.1E-16 3.6E-21 140.3 -4.3 155 132-317 14-186 (198)
132 3sb4_A Hypothetical leucine ri 99.5 6.3E-15 2.2E-19 139.4 7.0 237 88-329 25-327 (329)
133 2p1m_B Transport inhibitor res 99.5 7.8E-16 2.7E-20 157.0 0.8 84 88-171 105-195 (594)
134 3sb4_A Hypothetical leucine ri 99.5 2.9E-14 9.8E-19 134.9 10.3 219 87-310 48-328 (329)
135 1a9n_A U2A', U2A'; complex (nu 99.5 5.5E-15 1.9E-19 126.8 3.1 131 156-315 15-152 (176)
136 3g39_A Variable lymphocyte rec 99.5 8.3E-14 2.8E-18 118.8 10.0 107 209-319 12-118 (170)
137 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 117.6 11.2 104 91-197 12-116 (170)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.7E-18 118.7 10.6 105 87-196 18-126 (176)
139 2r9u_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 116.9 9.9 108 209-320 15-122 (174)
140 2r9u_A Variable lymphocyte rec 99.4 5.3E-13 1.8E-17 114.2 11.4 104 91-197 15-119 (174)
141 4fdw_A Leucine rich hypothetic 99.4 3.1E-12 1.1E-16 124.1 16.8 237 89-339 114-361 (401)
142 4fdw_A Leucine rich hypothetic 99.4 4.7E-12 1.6E-16 122.8 17.3 236 88-334 135-381 (401)
143 2ifg_A High affinity nerve gro 99.4 2.7E-12 9.2E-17 122.0 11.9 102 94-197 14-117 (347)
144 3un9_A NLR family member X1; l 99.3 3.6E-14 1.2E-18 136.4 -5.5 62 112-173 72-139 (372)
145 2ifg_A High affinity nerve gro 99.3 1.6E-11 5.6E-16 116.6 11.2 103 211-317 13-117 (347)
146 3un9_A NLR family member X1; l 99.3 1E-13 3.4E-18 133.3 -4.3 165 135-318 71-254 (372)
147 2ra8_A Uncharacterized protein 98.9 3.9E-10 1.3E-14 107.6 4.0 206 87-314 106-341 (362)
148 2ra8_A Uncharacterized protein 98.8 2.8E-09 9.5E-14 101.6 4.9 197 112-334 107-341 (362)
149 4gt6_A Cell surface protein; l 98.6 4.6E-07 1.6E-11 87.3 15.1 79 89-169 65-146 (394)
150 4fs7_A Uncharacterized protein 98.6 4E-07 1.4E-11 87.8 12.7 95 232-332 277-375 (394)
151 1io0_A Tropomodulin; LRR prote 98.5 2.9E-08 1E-12 85.4 2.8 109 88-196 36-164 (185)
152 4gt6_A Cell surface protein; l 98.5 1.2E-06 4E-11 84.5 14.1 238 86-333 85-367 (394)
153 4fs7_A Uncharacterized protein 98.5 1.1E-06 3.9E-11 84.6 13.2 198 105-313 155-376 (394)
154 1io0_A Tropomodulin; LRR prote 98.4 2.7E-08 9.1E-13 85.6 -0.3 61 255-315 93-163 (185)
155 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.5E-12 85.2 3.1 39 135-173 169-209 (267)
156 3rw6_A Nuclear RNA export fact 98.3 7.3E-07 2.5E-11 80.8 5.7 95 93-189 148-257 (267)
157 4h09_A Hypothetical leucine ri 98.2 4.1E-05 1.4E-09 73.0 17.4 77 89-170 47-123 (379)
158 3e4g_A ATP synthase subunit S, 98.0 2.4E-06 8.1E-11 72.2 3.4 84 88-171 61-150 (176)
159 4h09_A Hypothetical leucine ri 97.9 0.00037 1.3E-08 66.3 16.8 126 207-338 218-347 (379)
160 3e4g_A ATP synthase subunit S, 97.9 3.5E-06 1.2E-10 71.1 2.1 83 232-314 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 4.4E-05 1.5E-09 65.6 2.1 83 88-170 41-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 6.5E-05 2.2E-09 64.5 2.7 82 232-313 42-136 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.0014 4.8E-08 52.3 6.3 56 259-316 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.003 1E-07 50.3 6.7 55 92-148 12-67 (130)
165 2lz0_A Uncharacterized protein 39.2 33 0.0011 25.1 4.0 40 129-169 13-52 (100)
166 3ghp_A Cellulosomal scaffoldin 38.0 24 0.00083 29.5 3.3 8 328-335 153-160 (227)
167 2lz0_A Uncharacterized protein 36.6 85 0.0029 22.8 6.0 49 98-147 6-54 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7e-43 Score=330.16 Aligned_cols=293 Identities=24% Similarity=0.416 Sum_probs=264.3
Q ss_pred CcHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCC--ccceecCCCCCCCCCCcEEEEECCCCCCcc--cCCccccCCCC
Q 045950 39 RLSKAYTALQAWKYAITSDPNGFTSNWY-GPDVCN--YTGVYCAPAPDDPHSLTVAGIDLNHANIAG--TLPEELGLLED 113 (405)
Q Consensus 39 ~~~~~~~al~~~~~~~~~~~~~~~~~w~-~~~~C~--w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~ 113 (405)
+.+.|.+||++||+++. +|. .+.+|. +.++|. |.||.|+... ...+|+.|+|++|++.+ .+|..|.++++
T Consensus 3 c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp SCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCC---CCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 56789999999999994 554 678896 567898 9999997411 12689999999999999 89999999999
Q ss_pred CcEEeccC-CCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecC
Q 045950 114 LALFHLNS-NRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFIN 191 (405)
Q Consensus 114 L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~ 191 (405)
|++|++++ |.+.+.+|..|.++++|++|++++|++++.+|..+..+++|++|++++|++.+.+|..+..++ |++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 99999995 999999999999999999999999999999999999999999999999999999999999888 9999999
Q ss_pred CCCCCCCCCCCcCC-C-CcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCC
Q 045950 192 NNKFSSSLPKNIGN-S-PVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVG 269 (405)
Q Consensus 192 ~N~l~~~~~~~~~~-~-~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 269 (405)
+|++++.+|..++. . .|++|++++|++.+.+|..+..+ .|++|++++|.+.+..+..+..+++|+.|+|++|++++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 99999888888876 3 79999999999999999999887 49999999999999999999999999999999999997
Q ss_pred CCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCC---CCCCCcccCCCCC-CCCCC
Q 045950 270 PLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLT---CLNLKDKDDRQNC-IPNRP 339 (405)
Q Consensus 270 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~L~~L~l~~N~-l~~~p 339 (405)
.++. +..+++|++|+|++|+|++.+|..+..+++|++|++++|++++.+|. +.+|+.+++++|. +.+.|
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 6665 88899999999999999999999999999999999999999988875 4568888888886 55544
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.6e-39 Score=332.15 Aligned_cols=270 Identities=21% Similarity=0.332 Sum_probs=213.0
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCCC-------CCC-CCCCCCc---cceecCCCCCCCCCCcEEEEECCCCCCcccCC
Q 045950 37 NPRLSKAYTALQAWKYAITSDPNGFTS-------NWY-GPDVCNY---TGVYCAPAPDDPHSLTVAGIDLNHANIAGTLP 105 (405)
Q Consensus 37 ~~~~~~~~~al~~~~~~~~~~~~~~~~-------~w~-~~~~C~w---~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p 105 (405)
.....+|+.||.++++++.++.|.... +|. +.++|.| .||.|+. ..+|+.|+|+++++.|.+|
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~------~~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS------NGRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT------TCCEEEEECTTSCCEEEEC
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC------CCCEEEEEecCcccCCcCC
Confidence 345668999999999999766665444 796 6789999 9999974 2699999999999999999
Q ss_pred ccccCCCCCcEEeccCCC--------------------------------------------------------------
Q 045950 106 EELGLLEDLALFHLNSNR-------------------------------------------------------------- 123 (405)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n~-------------------------------------------------------------- 123 (405)
++++++++|++|+|++|.
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 999999999999999884
Q ss_pred ----------------CCCccchhccCCCCCcEEECCCCcCCcc-----------------Cchhhh--CCCCCcEEecc
Q 045950 124 ----------------FCGTIPDSFRNMRLLFELDVSTNQFSGC-----------------FPSVVL--CLPSLKFLDIR 168 (405)
Q Consensus 124 ----------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l~~L~~L~Ls 168 (405)
+++ +|..|+++++|++|+|++|++++. +|..++ ++++|++|+|+
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 334 788899999999999999999975 898888 99999999999
Q ss_pred ccccCCCCChhhhccc-cceeecCCCC-CCC-CCCCCcCC-------CCcchhhcccCCCCcCCch--HHHhhcccCcEE
Q 045950 169 FNQFEGDIPSAVFDLK-LDALFINNNK-FSS-SLPKNIGN-------SPVSVLVLANNNLNSCIPS--SLTKMAGTLNEI 236 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~-L~~L~L~~N~-l~~-~~~~~~~~-------~~L~~L~L~~n~l~~~~p~--~l~~l~~~L~~L 236 (405)
+|++.+.+|..+..+. |++|++++|+ +++ .+|..++. .+|++|++++|+++ .+|. .+..+. +|++|
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L 335 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGML 335 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEE
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEE
Confidence 9999999999888887 9999999998 887 67776654 57888888888888 6777 787777 88888
Q ss_pred EccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCC-CCEEEeecCcCcccCchhhcCCC--CCCEEEccCC
Q 045950 237 ILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKS-LEQLNVAHNKLSGAIPESICRLP--KLENFTYSYN 313 (405)
Q Consensus 237 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~Ls~N 313 (405)
++++|++.|.+| .++.+++|+.|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+.... +|+.|++++|
T Consensus 336 ~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp ECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS
T ss_pred eCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCC
Confidence 888888887776 6666666666666666666 55666666666 666666666666 5555544433 5555555555
Q ss_pred cCCCC
Q 045950 314 FFCSE 318 (405)
Q Consensus 314 ~l~~~ 318 (405)
++++.
T Consensus 413 ~l~~~ 417 (636)
T 4eco_A 413 EIGSV 417 (636)
T ss_dssp CTTTT
T ss_pred cCCCc
Confidence 55554
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-37 Score=325.66 Aligned_cols=309 Identities=21% Similarity=0.288 Sum_probs=252.6
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCCCCCCCCCC--CCc------------cceecCCCCCCCCCCcEEEEECCCCCCc
Q 045950 36 PNPRLSKAYTALQAWKYAITSDPNGFTSNWYGPDV--CNY------------TGVYCAPAPDDPHSLTVAGIDLNHANIA 101 (405)
Q Consensus 36 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~w~~~~~--C~w------------~gv~c~~~~~~~~~~~l~~L~L~~n~l~ 101 (405)
......+|+.||++||+++.+..|.....|...++ |.| .||.|+. ..+|+.|+|+++++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~------~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN------NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT------TSCEEEEECTTTCCE
T ss_pred ccccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecC------CCCEEEEECccCCCC
Confidence 34456789999999999995332222222322345 999 9999973 469999999999999
Q ss_pred ccCCccccCCCCCcEEec-cCCCCCCc-----------------------------------------------------
Q 045950 102 GTLPEELGLLEDLALFHL-NSNRFCGT----------------------------------------------------- 127 (405)
Q Consensus 102 ~~~p~~l~~l~~L~~L~L-s~n~l~~~----------------------------------------------------- 127 (405)
|.+|+.|++|++|+.|+| ++|.+.|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 77754332
Q ss_pred -----------------------cchhccCCCCCcEEECCCCcCCc-----------------cCchhhh--CCCCCcEE
Q 045950 128 -----------------------IPDSFRNMRLLFELDVSTNQFSG-----------------CFPSVVL--CLPSLKFL 165 (405)
Q Consensus 128 -----------------------~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~l~--~l~~L~~L 165 (405)
+|..|+++++|++|+|++|++++ .+|..++ ++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 78889999999999999999997 3898877 99999999
Q ss_pred eccccccCCCCChhhhccc-cceeecCCCC-CCC-CCCCCcCC--------CCcchhhcccCCCCcCCch--HHHhhccc
Q 045950 166 DIRFNQFEGDIPSAVFDLK-LDALFINNNK-FSS-SLPKNIGN--------SPVSVLVLANNNLNSCIPS--SLTKMAGT 232 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~-l~~-~~~~~~~~--------~~L~~L~L~~n~l~~~~p~--~l~~l~~~ 232 (405)
+|++|++.+.+|..+..++ |++|++++|+ +++ .+|..++. .+|+.|++++|.+. .+|. .+..+. +
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~-~ 574 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV-K 574 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT-T
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC-C
Confidence 9999999999999999998 9999999998 887 67765543 37999999999999 7888 899988 9
Q ss_pred CcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCC-CCEEEeecCcCcccCchhhcCCCC--CCEEE
Q 045950 233 LNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKS-LEQLNVAHNKLSGAIPESICRLPK--LENFT 309 (405)
Q Consensus 233 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~ 309 (405)
|++|++++|++. .+| .|+.+++|+.|+|++|++. .+|..+..+++ |++|+|++|+|+ .+|..+..+.. |+.|+
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 999999999998 777 8999999999999999999 88988999998 999999999998 78887776644 88888
Q ss_pred ccCCcCCCCCCCC---------CCCCcccCCCCCCCCCCCC----CCccccccccCCCCC
Q 045950 310 YSYNFFCSEPLTC---------LNLKDKDDRQNCIPNRPLQ----RSAMECKSFYAHPVD 356 (405)
Q Consensus 310 Ls~N~l~~~~~~~---------~~L~~L~l~~N~l~~~p~~----~~~~~~~~~~~np~~ 356 (405)
+++|++++.++.. .+|+.|++++|.|+.+|.. ...++...+.+|.+.
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 8888888766532 2667777777777766532 234444555555443
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-37 Score=323.62 Aligned_cols=291 Identities=23% Similarity=0.323 Sum_probs=205.5
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCccceecCCCCCCCCCCcEEEEECCCCCCccc---CC--------
Q 045950 38 PRLSKAYTALQAWKYAITSDPNGFTSNWY-GPDVCNYTGVYCAPAPDDPHSLTVAGIDLNHANIAGT---LP-------- 105 (405)
Q Consensus 38 ~~~~~~~~al~~~~~~~~~~~~~~~~~w~-~~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~---~p-------- 105 (405)
+..++|++||++||+++. ||. .+++|. +.++|.|.||.|+ .++|+.|+|+++.+.|. ++
T Consensus 8 ~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~-------~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR-------DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE-------TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred cCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC-------CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence 456789999999999996 776 789996 6789999999996 24888888888887775 33
Q ss_pred ---------------ccccCCCCCcEEeccCCCCCCccch--hccCCCCCcEEECCCCcCCccCchhh-hCCCCCcEEec
Q 045950 106 ---------------EELGLLEDLALFHLNSNRFCGTIPD--SFRNMRLLFELDVSTNQFSGCFPSVV-LCLPSLKFLDI 167 (405)
Q Consensus 106 ---------------~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L 167 (405)
..|+.+++|++|+|++|.+++.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|++
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 4566677777777777777766666 67777777777777777766555544 55666666666
Q ss_pred cccccCCCCChh---hh----------------------ccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCc
Q 045950 168 RFNQFEGDIPSA---VF----------------------DLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNS 220 (405)
Q Consensus 168 s~N~i~~~~p~~---~~----------------------~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 220 (405)
++|++++..+.. +. .+. |++|++++|.+++.++. ++. .+|++|++++|.+.+
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence 666665444433 22 222 55566666666555554 332 456666666666666
Q ss_pred CCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCC-CCCCEEEeecCcCcccCchhh
Q 045950 221 CIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNM-KSLEQLNVAHNKLSGAIPESI 299 (405)
Q Consensus 221 ~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l 299 (405)
.+|..+..+. +|++|++++|.+.+.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|++++.+|..+
T Consensus 238 ~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 238 DFSRAISTCT-ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp CHHHHTTTCS-SCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred cccHHHhcCC-CCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 6666666666 6777777777666655544 66677777777777777777777664 888888888888888888888
Q ss_pred cCCCCCCEEEccCCcCCCCCC-----CCCCCCcccCCCCCCC-CCCCC
Q 045950 300 CRLPKLENFTYSYNFFCSEPL-----TCLNLKDKDDRQNCIP-NRPLQ 341 (405)
Q Consensus 300 ~~l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~-~~p~~ 341 (405)
..+++|++|++++|++++.++ .+.+|++|++++|.++ .+|..
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 888888888888888876554 4677888888888887 44443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-36 Score=320.47 Aligned_cols=272 Identities=27% Similarity=0.433 Sum_probs=244.1
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|++++|++.+.+|..++++++|++|++++|++++.+|..|.++++|++|++++|++++.+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 45788999999999988999999999999999999999988999999999999999999999989999999999999999
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLT 244 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~ 244 (405)
+++|++.+.+|..+..+. |++|++++|++++.+|..++. .+|++|++++|++.+.+|..+..+. +|++|++++|.+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccC
Confidence 999999988999888887 999999999999888888766 6799999999999998999999888 9999999999887
Q ss_pred CCCCcc----------------------------------------------------------------------CCCC
Q 045950 245 GCFPQD----------------------------------------------------------------------IGLL 254 (405)
Q Consensus 245 ~~~p~~----------------------------------------------------------------------~~~l 254 (405)
+.+|.. ++.+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 666643 3446
Q ss_pred CCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccC
Q 045950 255 NQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDD 330 (405)
Q Consensus 255 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l 330 (405)
++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+| .+..|++||+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 789999999999999999999999999999999999999999999999999999999999999988 3578999999
Q ss_pred CCCCCCCC-C--CCCCccccccccCCCCCCCC
Q 045950 331 RQNCIPNR-P--LQRSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 331 ~~N~l~~~-p--~~~~~~~~~~~~~np~~C~~ 359 (405)
++|++++. | .++..+...+|.+||..|+.
T Consensus 712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred cCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 99999875 3 35667777889999999975
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=8.8e-36 Score=283.29 Aligned_cols=276 Identities=19% Similarity=0.290 Sum_probs=221.9
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCCCCCC-----CCCCCCccceecCCCCC---CCCCCcEEEEECCCCCCcccCCcc
Q 045950 36 PNPRLSKAYTALQAWKYAITSDPNGFTSNWY-----GPDVCNYTGVYCAPAPD---DPHSLTVAGIDLNHANIAGTLPEE 107 (405)
Q Consensus 36 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~w~-----~~~~C~w~gv~c~~~~~---~~~~~~l~~L~L~~n~l~~~~p~~ 107 (405)
....+..++.||++||..+..++.++...|. ..++|.|.|+.|...+. .....+|+.|+|++|++. .+|+.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 3456677899999999998778877888893 56799999999952110 013468999999999998 78888
Q ss_pred ccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhc-----
Q 045950 108 LGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFD----- 182 (405)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~----- 182 (405)
+..+++|++|+|++|.++ .+|..|+++++|++|+|++|+++ .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 999999999999999999 88999999999999999999999 88999999999999999999988899987764
Q ss_pred ----cc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCC
Q 045950 183 ----LK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQ 256 (405)
Q Consensus 183 ----~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~ 256 (405)
+. |++|++++|+++ .+|..++. .+|++|++++|.+.+ +|..+..+. +|++|++++|++.+.+|..++.+++
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCT-TCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCC-CCCEEECcCCcchhhhHHHhcCCCC
Confidence 55 888888888887 66665544 567788888888775 555677776 7888888887777777777777788
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCC
Q 045950 257 VTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCS 317 (405)
Q Consensus 257 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 317 (405)
|++|+|++|++.+.+|..+.++++|++|+|++|.+.+.+|..+.++++|+.+++..|.+..
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 8888888877777777777777888888888877777778777778888877777665543
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.5e-34 Score=285.01 Aligned_cols=272 Identities=19% Similarity=0.227 Sum_probs=194.3
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCcc-chhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTI-PDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
.++++|+|++|++.+..|..|.++++|++|++++|.+.+.+ +..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56777777777777766777777777777777777665443 44566666777777777766655566666666666666
Q ss_pred ccccccCCCCChh--hhccc-cceeecCCCCCCCCCCCC-c-CCCC----------------------------------
Q 045950 167 IRFNQFEGDIPSA--VFDLK-LDALFINNNKFSSSLPKN-I-GNSP---------------------------------- 207 (405)
Q Consensus 167 Ls~N~i~~~~p~~--~~~~~-L~~L~L~~N~l~~~~~~~-~-~~~~---------------------------------- 207 (405)
+++|++++..+.. +..+. |++|++++|.+++..|.. + ...+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 6666655433322 33333 555555555555443332 2 1133
Q ss_pred ------------------------cchhhcccCCCCcCCchHHHhhc---------------------------------
Q 045950 208 ------------------------VSVLVLANNNLNSCIPSSLTKMA--------------------------------- 230 (405)
Q Consensus 208 ------------------------L~~L~L~~n~l~~~~p~~l~~l~--------------------------------- 230 (405)
|+.|++++|.+.+..+..+....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 44455555544443333333220
Q ss_pred -----ccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCC
Q 045950 231 -----GTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKL 305 (405)
Q Consensus 231 -----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 305 (405)
.+|++|++++|++.+..+..++.+++|++|++++|++.+..|..|.++++|++|+|++|++++..+..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 257777777777877788889999999999999999998888899999999999999999998888999999999
Q ss_pred CEEEccCCcCCCCCC----CCCCCCcccCCCCCCCCCCCC----CCccccccccCCCCCCCC
Q 045950 306 ENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPNRPLQ----RSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 306 ~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~~----~~~~~~~~~~~np~~C~~ 359 (405)
++|++++|++++.++ .+.+|++|++++|+|++++.. ...++...+.+|++.|+.
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 999999999998865 467899999999999998753 356677889999999864
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=272.33 Aligned_cols=284 Identities=19% Similarity=0.184 Sum_probs=229.7
Q ss_pred ccceecCCC-----CCCCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCc
Q 045950 73 YTGVYCAPA-----PDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQ 147 (405)
Q Consensus 73 w~gv~c~~~-----~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 147 (405)
|..+.|... |. ....+++.|+|++|++.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+
T Consensus 13 ~~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 456777532 21 234578999999999998888899999999999999999998888999999999999999999
Q ss_pred CCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchH
Q 045950 148 FSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSS 225 (405)
Q Consensus 148 l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~ 225 (405)
+++..+..|.++++|++|+|++|++.+..+..+..+. |++|++++|.+.+..+..+.. .+|+.|++++|.+++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 9966566788999999999999999877777888777 999999999998777766655 67999999999998766667
Q ss_pred HHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEc------------------------cCCCCCCCCccccCCCCCC
Q 045950 226 LTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDV------------------------GFNNLVGPLPESMGNMKSL 281 (405)
Q Consensus 226 l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L------------------------~~N~l~~~~p~~~~~l~~L 281 (405)
+..+. +|+.|++++|.+.+..+..|..+++|+.|++ ++|++++..+..+..+++|
T Consensus 172 l~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCT-TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred hcccC-CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 77777 8888888888887766666666655555554 4555663333567788888
Q ss_pred CEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCCCCCCCC----CCccccccccCC
Q 045950 282 EQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPNRPLQ----RSAMECKSFYAH 353 (405)
Q Consensus 282 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~~----~~~~~~~~~~~n 353 (405)
++|+|++|.|++..+..|..+++|+.|+|++|++++..+ .+.+|+.|++++|.|++++.. ...++...+.+|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 888888888887777778888899999999999888765 467899999999999998753 345666788999
Q ss_pred CCCCC
Q 045950 354 PVDCG 358 (405)
Q Consensus 354 p~~C~ 358 (405)
|+.|+
T Consensus 331 ~l~c~ 335 (477)
T 2id5_A 331 PLACD 335 (477)
T ss_dssp CEECS
T ss_pred CccCc
Confidence 99887
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.4e-32 Score=268.87 Aligned_cols=256 Identities=17% Similarity=0.194 Sum_probs=203.4
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchh--ccCCCCCcEEECCCCcCCccCchh-hhCCCCC
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDS--FRNMRLLFELDVSTNQFSGCFPSV-VLCLPSL 162 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L 162 (405)
...+++.|+|++|++.+..|..|+++++|++|++++|++++..+.. |.++++|++|++++|++++..|.. +..+++|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 4556777777777777777777777777777777777777644444 777777777777777777665654 6777777
Q ss_pred cEEeccccccCCCCChhhhcc----------------------------------c-cceeecCCCCCCCCCCCCc----
Q 045950 163 KFLDIRFNQFEGDIPSAVFDL----------------------------------K-LDALFINNNKFSSSLPKNI---- 203 (405)
Q Consensus 163 ~~L~Ls~N~i~~~~p~~~~~~----------------------------------~-L~~L~L~~N~l~~~~~~~~---- 203 (405)
++|++++|++.+..+..+... . |++|++++|++++..+..+
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 777777777776555544332 2 6666666666543222111
Q ss_pred ------------------------------------CCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCC
Q 045950 204 ------------------------------------GNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCF 247 (405)
Q Consensus 204 ------------------------------------~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 247 (405)
...+++.|++++|.+.+..+..+..+. +|++|++++|++.+..
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKID 315 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEEC
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccC
Confidence 113688999999999998888898888 9999999999999998
Q ss_pred CccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCC
Q 045950 248 PQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCL 323 (405)
Q Consensus 248 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~ 323 (405)
+..|..+++|++|+|++|++.+..+..|.++++|++|+|++|++++..|..+..+++|++|++++|++++.++ .+.
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 9999999999999999999998889999999999999999999998889999999999999999999998776 457
Q ss_pred CCCcccCCCCCCCCCCCCC
Q 045950 324 NLKDKDDRQNCIPNRPLQR 342 (405)
Q Consensus 324 ~L~~L~l~~N~l~~~p~~~ 342 (405)
+|+.|++++|.++......
T Consensus 396 ~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TCCEEECCSSCBCCCTTTT
T ss_pred cccEEEccCCCcccCCCcc
Confidence 8999999999998865543
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1e-32 Score=260.39 Aligned_cols=246 Identities=21% Similarity=0.304 Sum_probs=224.0
Q ss_pred CCCcEEeccCCCCCC--ccchhccCCCCCcEEECCC-CcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cce
Q 045950 112 EDLALFHLNSNRFCG--TIPDSFRNMRLLFELDVST-NQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDA 187 (405)
Q Consensus 112 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~ 187 (405)
.+++.|+|++|.+++ .+|..|.++++|++|++++ |.+.+.+|..|..+++|++|+|++|++.+.+|..+..+. |++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 999999999999999999999999999989999999888 999
Q ss_pred eecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCC
Q 045950 188 LFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNN 266 (405)
Q Consensus 188 L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 266 (405)
|++++|.+++.+|..+.. .+|++|++++|++++.+|..+..+..+|++|++++|++.+.+|..+..+. |+.|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999988888765 67999999999999999999998876899999999999999999999997 9999999999
Q ss_pred CCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCCCCC-CC-
Q 045950 267 LVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPNR-PL- 340 (405)
Q Consensus 267 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~-p~- 340 (405)
+++..|..+..+++|++|++++|++++.++. +..+++|++|++++|++++.+| .+.+|+.|++++|.|++. |.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999976665 8889999999999999998776 467899999999999853 43
Q ss_pred -CCCccccccccCCCCCCCC
Q 045950 341 -QRSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 341 -~~~~~~~~~~~~np~~C~~ 359 (405)
.+..++...+.+|+..|+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccccccChHHhcCCCCccCC
Confidence 3455666789999999974
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-31 Score=274.20 Aligned_cols=268 Identities=17% Similarity=0.181 Sum_probs=166.4
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+++.+++++|.+....+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34455555555555444444455555555555555555444445555555555555555555544445555555555555
Q ss_pred cccccCCCCChh-hhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhh---------------
Q 045950 168 RFNQFEGDIPSA-VFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKM--------------- 229 (405)
Q Consensus 168 s~N~i~~~~p~~-~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l--------------- 229 (405)
++|.+. .+|.. +..+. |++|++++|.+++..+..++. .+|+.|++++|.+.+.....+..+
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 555555 33322 33443 555555555555444444433 345555555555544221111111
Q ss_pred ---------------------cccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeec
Q 045950 230 ---------------------AGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAH 288 (405)
Q Consensus 230 ---------------------~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 288 (405)
..+|+.|++++|.+.+ +..+..+++|+.|+|++|.+.+..|..|..+++|+.|+|++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 0146666666666664 35677888888888888888877788888888888888888
Q ss_pred CcCcccCchhhcCCCCCCEEEccCCcCCCCCC---CCCCCCcccCCCCCCCCCC-CCCCccccccccCCCCCCCC
Q 045950 289 NKLSGAIPESICRLPKLENFTYSYNFFCSEPL---TCLNLKDKDDRQNCIPNRP-LQRSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 289 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~~~p-~~~~~~~~~~~~~np~~C~~ 359 (405)
|.+++ +|..+..+++|+.|+|++|.+++.+. .+.+|+.|++++|.|++++ ..+..++...+.+||+.|+.
T Consensus 288 N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 288 NRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChh
Confidence 88884 56667778888888888888886654 3578888888888888775 33456666778888888753
No 12
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.1e-30 Score=246.56 Aligned_cols=260 Identities=20% Similarity=0.235 Sum_probs=223.2
Q ss_pred CCCccceecCCCCC----CCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCC
Q 045950 70 VCNYTGVYCAPAPD----DPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVST 145 (405)
Q Consensus 70 ~C~w~gv~c~~~~~----~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 145 (405)
.|.|+.+.|....- .....+++.|++++|++.+..+..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 37888888864210 11245899999999999988888999999999999999999988899999999999999999
Q ss_pred CcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCC--CCCCCcCCCCcchhhcccCCCCcCC
Q 045950 146 NQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSS--SLPKNIGNSPVSVLVLANNNLNSCI 222 (405)
Q Consensus 146 N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~ 222 (405)
|+++ .+|..+. ++|++|++++|++.+..+..+..+. |++|++++|.++. ..+..+...+|+.|++++|++++ +
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l 187 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-I 187 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-C
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-c
Confidence 9999 6666554 8999999999999955555677777 9999999999963 56667766799999999999986 5
Q ss_pred chHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCC
Q 045950 223 PSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRL 302 (405)
Q Consensus 223 p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 302 (405)
|..+. .+|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|+++ .+|..+..+
T Consensus 188 ~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 188 PKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred Ccccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 55544 38999999999999888899999999999999999999887788999999999999999999 789999999
Q ss_pred CCCCEEEccCCcCCCCCCC----------CCCCCcccCCCCCCCC
Q 045950 303 PKLENFTYSYNFFCSEPLT----------CLNLKDKDDRQNCIPN 337 (405)
Q Consensus 303 ~~L~~L~Ls~N~l~~~~~~----------~~~L~~L~l~~N~l~~ 337 (405)
++|++|++++|+|++.++. ...|+.|++++|.+..
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 9999999999999987652 2457889999998873
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.2e-31 Score=257.68 Aligned_cols=268 Identities=17% Similarity=0.182 Sum_probs=178.5
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+++.|+++++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45666666666665444444566666666666666666555555666666666666666666555555666666666666
Q ss_pred cccccCCCCChh-hhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhh---------------
Q 045950 168 RFNQFEGDIPSA-VFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKM--------------- 229 (405)
Q Consensus 168 s~N~i~~~~p~~-~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l--------------- 229 (405)
++|++. .+|.. +..+. |++|++++|.+++..+..+.. .+|+.|++++|.+++.....+..+
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 666665 44433 34444 666666666666554544433 456666666666554321111111
Q ss_pred ---------------------cccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeec
Q 045950 230 ---------------------AGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAH 288 (405)
Q Consensus 230 ---------------------~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 288 (405)
..+|++|++++|++.+. ..+..+++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 01466666666666643 4677888899999999998877788888899999999999
Q ss_pred CcCcccCchhhcCCCCCCEEEccCCcCCCCCC---CCCCCCcccCCCCCCCCCC-CCCCccccccccCCCCCCCC
Q 045950 289 NKLSGAIPESICRLPKLENFTYSYNFFCSEPL---TCLNLKDKDDRQNCIPNRP-LQRSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 289 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~~~p-~~~~~~~~~~~~~np~~C~~ 359 (405)
|+++ .++..+..+++|++|++++|++++.++ .+.+|+.|++++|.|+.++ ..+..++...+.+|++.|+.
T Consensus 282 n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHH
T ss_pred CcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccchh
Confidence 9988 466667778899999999999887655 3578999999999998876 33566667788999988863
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3.7e-30 Score=264.73 Aligned_cols=273 Identities=19% Similarity=0.194 Sum_probs=198.8
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|||++|+|++..+.+|.++++|++|+|++|+|++..+.+|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 35789999999999988788899999999999999999977777899999999999999999866667788888999999
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCC-CCCCcCC-CCcchhhcccCCCCcCCchHHHhhc-------------
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSS-LPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMA------------- 230 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~-~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~------------- 230 (405)
|++|++++..+..+..+. |++|++++|.+++. .|..++. ..|++|++++|++++..+..+..+.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 998888854445566666 88888888887643 3444443 4566666666655433222111100
Q ss_pred --------------------------------------------------------------------------------
Q 045950 231 -------------------------------------------------------------------------------- 230 (405)
Q Consensus 231 -------------------------------------------------------------------------------- 230 (405)
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 045950 231 -------------------------------------------------------------------------------- 230 (405)
Q Consensus 231 -------------------------------------------------------------------------------- 230 (405)
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence
Q ss_pred ccCcEEEccCCCC-------------------------------------------------------------------
Q 045950 231 GTLNEIILLNTGL------------------------------------------------------------------- 243 (405)
Q Consensus 231 ~~L~~L~l~~n~l------------------------------------------------------------------- 243 (405)
.+|+.|++++|.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 0122333333222
Q ss_pred -------CCCCCccCCCCCCccEEEccCCCCC-CCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcC
Q 045950 244 -------TGCFPQDIGLLNQVTVFDVGFNNLV-GPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFF 315 (405)
Q Consensus 244 -------~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 315 (405)
.+..+..+..++.|+.|++++|++. +..|..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 1112222334445556666666533 34567788899999999999999988899999999999999999999
Q ss_pred CCCCC----CCCCCCcccCCCCCCCCCCCC-C----CccccccccCCCCCCCC
Q 045950 316 CSEPL----TCLNLKDKDDRQNCIPNRPLQ-R----SAMECKSFYAHPVDCGA 359 (405)
Q Consensus 316 ~~~~~----~~~~L~~L~l~~N~l~~~p~~-~----~~~~~~~~~~np~~C~~ 359 (405)
++.++ .+.+|+.||+++|+|++++.. + ..++...+.+||+.|+-
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99876 467899999999999998543 2 34666789999999973
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=9.7e-31 Score=268.51 Aligned_cols=268 Identities=19% Similarity=0.163 Sum_probs=172.5
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCch-hhhCCCCCcEEe
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPS-VVLCLPSLKFLD 166 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ 166 (405)
.+++.|++++|++. .+|..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+.++. .+..+++|++|+
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 34555555555544 3444455555555555555555544444455555555555555555433332 245555555555
Q ss_pred ccccccCCCC--Chhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchH-HHhhcccCcEEEccCC
Q 045950 167 IRFNQFEGDI--PSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSS-LTKMAGTLNEIILLNT 241 (405)
Q Consensus 167 Ls~N~i~~~~--p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~-l~~l~~~L~~L~l~~n 241 (405)
+++|++.+.. +..+..+. |++|++++|++.+..+..+.. .+|+.|++++|++.+..+.. +..+. +|++|++++|
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n 435 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKVLNLSHS 435 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCEEECTTC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCEEECCCC
Confidence 5555554332 34444444 666666666666555555543 45777777777776554433 55555 7777788777
Q ss_pred CCCCCCCccCCCCCCccEEEccCCCCCCC---CccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCC
Q 045950 242 GLTGCFPQDIGLLNQVTVFDVGFNNLVGP---LPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 242 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 318 (405)
.+.+..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..|..+++|++|++++|++++.
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 77777777777788888888888877652 234577788888888888888877778888888888888888888876
Q ss_pred CC----CCCCCCcccCCCCCCCCCCCC----CCccccccccCCCCCCC
Q 045950 319 PL----TCLNLKDKDDRQNCIPNRPLQ----RSAMECKSFYAHPVDCG 358 (405)
Q Consensus 319 ~~----~~~~L~~L~l~~N~l~~~p~~----~~~~~~~~~~~np~~C~ 358 (405)
++ .+..| .|++++|.+++.+.. ...++...+.+||+.|+
T Consensus 516 ~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 516 SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp GGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 65 35567 888899988887643 24556678999999986
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.6e-30 Score=243.30 Aligned_cols=262 Identities=19% Similarity=0.218 Sum_probs=198.4
Q ss_pred CCCCccceecCCCC--C--CCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECC
Q 045950 69 DVCNYTGVYCAPAP--D--DPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVS 144 (405)
Q Consensus 69 ~~C~w~gv~c~~~~--~--~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 144 (405)
..|.|+.+.|.... . .....+++.|++++|++++..+..|.++++|++|++++|++++..|..|.++++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 35678888886321 1 1123578888888888887777778888888888888888887778888888888888888
Q ss_pred CCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCC--CCCCCcCC-CCcchhhcccCCCCc
Q 045950 145 TNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSS--SLPKNIGN-SPVSVLVLANNNLNS 220 (405)
Q Consensus 145 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~--~~~~~~~~-~~L~~L~L~~n~l~~ 220 (405)
+|+++ .+|..+. ++|++|++++|++.+..+..+..+. |++|++++|.+.. ..+..+.. .+|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 88888 5665543 6888888888888855556666666 8888888888853 34444443 568888888888874
Q ss_pred CCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhc
Q 045950 221 CIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESIC 300 (405)
Q Consensus 221 ~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 300 (405)
+|..+. .+|++|++++|++.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 186 -l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 186 -IPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -CCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -CCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 444443 27888888888888777788888888888888888888766667888888888888888888 7787888
Q ss_pred CCCCCCEEEccCCcCCCCCCC----------CCCCCcccCCCCCCCCC
Q 045950 301 RLPKLENFTYSYNFFCSEPLT----------CLNLKDKDDRQNCIPNR 338 (405)
Q Consensus 301 ~l~~L~~L~Ls~N~l~~~~~~----------~~~L~~L~l~~N~l~~~ 338 (405)
.+++|++|++++|+|++.++. ...++.+++++|.+..+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 888888888888888876542 24567788888877654
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=4.6e-30 Score=261.37 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=81.2
Q ss_pred cCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCC--CccccCCCCCCCEEEeecCcCcccCchh-hcCC------
Q 045950 232 TLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGP--LPESMGNMKSLEQLNVAHNKLSGAIPES-ICRL------ 302 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l------ 302 (405)
+|++|++++|++.+.++..++.+++|+.|++++|++++. +|..+.++++|++|++++|++++.+|.. +..+
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 566666666666666666666666666666666666642 2344566666666666666665434332 3333
Q ss_pred ----------------CCCCEEEccCCcCCCCCC---CCCCCCcccCCCCCCCCCCCC-C---CccccccccCCCCCCC
Q 045950 303 ----------------PKLENFTYSYNFFCSEPL---TCLNLKDKDDRQNCIPNRPLQ-R---SAMECKSFYAHPVDCG 358 (405)
Q Consensus 303 ----------------~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~~~p~~-~---~~~~~~~~~~np~~C~ 358 (405)
++|+.|++++|+|+.++. .+.+|+.|++++|+|+++|.. + ..++...+.+||+.|+
T Consensus 434 ~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 466666666666665443 346788888888888888765 3 3455567899999986
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=261.69 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=83.9
Q ss_pred cCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCC--CCccccCCCCCCCEEEeecCcCcccCchh-hcCCC-----
Q 045950 232 TLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVG--PLPESMGNMKSLEQLNVAHNKLSGAIPES-ICRLP----- 303 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~----- 303 (405)
+|++|++++|++.+.+|..++.+++|+.|++++|++++ .+|..+..+++|++|++++|++++.+|.. +..++
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 67777777777777777777777777777777777775 44556677777777777777776545543 44444
Q ss_pred -----------------CCCEEEccCCcCCCCCC---CCCCCCcccCCCCCCCCCCCC-C---CccccccccCCCCCCC
Q 045950 304 -----------------KLENFTYSYNFFCSEPL---TCLNLKDKDDRQNCIPNRPLQ-R---SAMECKSFYAHPVDCG 358 (405)
Q Consensus 304 -----------------~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~~~p~~-~---~~~~~~~~~~np~~C~ 358 (405)
+|+.|++++|+++..+. .+.+|+.|++++|+|+.+|.. + ..++...+.+||+.|+
T Consensus 405 ~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp ECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 44445555555443332 345677788888888877754 3 3455567888888886
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.6e-30 Score=250.26 Aligned_cols=268 Identities=19% Similarity=0.171 Sum_probs=210.8
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 45788888888888877777888888888888888888877777788888888888888888844444467888888888
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcC--------------------------------------CCC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIG--------------------------------------NSP 207 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~--------------------------------------~~~ 207 (405)
+++|++.+..+..+..+. |++|++++|++++.....+. ..+
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 888888866666666666 88888888877643211111 124
Q ss_pred cchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEee
Q 045950 208 VSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVA 287 (405)
Q Consensus 208 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 287 (405)
|+.|++++|.+.+. ..+..+. +|++|++++|.+.+..+..+..+++|+.|+|++|+++ .++..+..+++|++|+++
T Consensus 228 L~~L~l~~n~l~~~--~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 228 LTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECC
T ss_pred ccEEECCCCCCccc--HHHcCCC-CccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECC
Confidence 67777777777753 5677777 9999999999999988999999999999999999999 467777889999999999
Q ss_pred cCcCcccCchhhcCCCCCCEEEccCCcCCCCCC-CCCCCCcccCCCCCCCCCC--CCCCccccccccCCCCCCCC
Q 045950 288 HNKLSGAIPESICRLPKLENFTYSYNFFCSEPL-TCLNLKDKDDRQNCIPNRP--LQRSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 288 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~L~~L~l~~N~l~~~p--~~~~~~~~~~~~~np~~C~~ 359 (405)
+|+++ .+|..+..+++|+.|++++|+++.... .+.+|+.|++++|.+.... ..+..+....+.+++..|..
T Consensus 304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCT
T ss_pred CCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecc
Confidence 99999 678888889999999999999998764 5789999999999987532 22333344456667777754
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=6.6e-31 Score=271.24 Aligned_cols=266 Identities=16% Similarity=0.238 Sum_probs=215.4
Q ss_pred CCCCcEEEEECCCCCCccc-----------------CCcccc--CCCCCcEEeccCCCCCCccchhccCCCCCcEEECCC
Q 045950 85 PHSLTVAGIDLNHANIAGT-----------------LPEELG--LLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVST 145 (405)
Q Consensus 85 ~~~~~l~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 145 (405)
....+++.|+|++|.+++. +|+.++ ++++|++|++++|++.+.+|..|+++++|++|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 3567899999999999986 899998 999999999999999999999999999999999999
Q ss_pred Cc-CCc-cCchhhhCC------CCCcEEeccccccCCCCCh--hhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhc
Q 045950 146 NQ-FSG-CFPSVVLCL------PSLKFLDIRFNQFEGDIPS--AVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVL 213 (405)
Q Consensus 146 N~-l~~-~~p~~l~~l------~~L~~L~Ls~N~i~~~~p~--~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L 213 (405)
|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+. |++|++++|+++|.+| .++. .+|+.|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 98 998 789888876 89999999999999 8888 888887 9999999999998888 5544 67889999
Q ss_pred ccCCCCcCCchHHHhhccc-CcEEEccCCCCCCCCCccCCCCC--CccEEEccCCCCCCCCccccC-------CCCCCCE
Q 045950 214 ANNNLNSCIPSSLTKMAGT-LNEIILLNTGLTGCFPQDIGLLN--QVTVFDVGFNNLVGPLPESMG-------NMKSLEQ 283 (405)
Q Consensus 214 ~~n~l~~~~p~~l~~l~~~-L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~ 283 (405)
++|++. .+|..+..+. + |++|++++|.+. .+|..+..+. +|+.|++++|++.+.+|..+. .+++|++
T Consensus 361 ~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 999988 6788888887 6 999999999888 6777777654 788888888888888887777 7778888
Q ss_pred EEeecCcCcccCchh-hcCCCCCCEEEccCCcCCCCCCCCC-----------CCCcccCCCCCCCCCCCCC-----Cccc
Q 045950 284 LNVAHNKLSGAIPES-ICRLPKLENFTYSYNFFCSEPLTCL-----------NLKDKDDRQNCIPNRPLQR-----SAME 346 (405)
Q Consensus 284 L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~~-----------~L~~L~l~~N~l~~~p~~~-----~~~~ 346 (405)
|+|++|+++ .+|.. +..+++|++|+|++|+++..+.... +|+.|++++|.|+.+|..+ ..++
T Consensus 438 L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 438 INLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516 (636)
T ss_dssp EECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCC
T ss_pred EECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcC
Confidence 888888888 45544 4557888888888888875444211 6777888888777766433 3444
Q ss_pred cccccCCCCC
Q 045950 347 CKSFYAHPVD 356 (405)
Q Consensus 347 ~~~~~~np~~ 356 (405)
...+.+|.+.
T Consensus 517 ~L~Ls~N~l~ 526 (636)
T 4eco_A 517 GIDLSYNSFS 526 (636)
T ss_dssp EEECCSSCCS
T ss_pred EEECCCCCCC
Confidence 4555555544
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=5e-30 Score=263.20 Aligned_cols=128 Identities=16% Similarity=0.058 Sum_probs=98.5
Q ss_pred cCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCC-CCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEc
Q 045950 232 TLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVG-PLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTY 310 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 310 (405)
+|++|++++|.+.+..+..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++..|..+.++++|++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 55666666666665566667777777777777777775 36777788888888888888888777888888889999999
Q ss_pred cCCcCCCCCC----CCCCCCcccCCCCCCCCCCCCCC----ccccccccCCCCCCCC
Q 045950 311 SYNFFCSEPL----TCLNLKDKDDRQNCIPNRPLQRS----AMECKSFYAHPVDCGA 359 (405)
Q Consensus 311 s~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~~~~----~~~~~~~~~np~~C~~ 359 (405)
++|++++.++ .+.+|+.|++++|+|+.+|..+. .++...+.+||+.|+.
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCC
Confidence 9998888754 45689999999999998886543 2556789999999864
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.5e-29 Score=259.67 Aligned_cols=250 Identities=17% Similarity=0.202 Sum_probs=195.5
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|++++|++++..|..|+++++|++|+|++|++++..|..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 45799999999999988899999999999999999999988899999999999999999999988899999999999999
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCC-CCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCc--EEEccCCC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSS-LPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLN--EIILLNTG 242 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~--~L~l~~n~ 242 (405)
+++|++.+..+..+..+. |++|++++|++.+. .+..++..+|++|++++|.+.+..+..+..+. +|+ .|++++|.
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ-QATNLSLNLNGND 190 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT-TCCSEEEECTTCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc-ccceeEEecCCCc
Confidence 999999865566777777 99999999999873 35555667788888888888877677676665 555 55555555
Q ss_pred CCC---------------------------------------------------------------------------CC
Q 045950 243 LTG---------------------------------------------------------------------------CF 247 (405)
Q Consensus 243 l~~---------------------------------------------------------------------------~~ 247 (405)
+.+ ..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 443 33
Q ss_pred CccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC-----CC
Q 045950 248 PQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL-----TC 322 (405)
Q Consensus 248 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~ 322 (405)
+..|..+++|++|++++|+++ .+|..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+.++ .+
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 344666677777777777777 667777777777777777777776666667777777777777777664332 34
Q ss_pred CCCCcccCCCCCCCCC
Q 045950 323 LNLKDKDDRQNCIPNR 338 (405)
Q Consensus 323 ~~L~~L~l~~N~l~~~ 338 (405)
.+|++|++++|.+++.
T Consensus 350 ~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 350 ENLRELDLSHDDIETS 365 (606)
T ss_dssp TTCCEEECCSSCCCEE
T ss_pred CcCCEEECCCCccccc
Confidence 5677777777776654
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.5e-29 Score=238.78 Aligned_cols=260 Identities=20% Similarity=0.273 Sum_probs=222.2
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
+++.++++++.+. .+|..+. +.|+.|++++|++++..+..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6778999999988 5666554 689999999999998777789999999999999999998889999999999999999
Q ss_pred ccccCCCCChhhhccccceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCc--CCchHHHhhcccCcEEEccCCCCCC
Q 045950 169 FNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNS--CIPSSLTKMAGTLNEIILLNTGLTG 245 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~--~~p~~l~~l~~~L~~L~l~~n~l~~ 245 (405)
+|+++ .+|..+. ..|++|++++|.+++..+..+.. .+|+.|++++|.+.. ..+..+..+. +|++|++++|++..
T Consensus 109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-CcCEEECCCCcccc
Confidence 99998 7776665 34999999999999666655554 679999999999964 5677888888 99999999999985
Q ss_pred CCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC---CC
Q 045950 246 CFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL---TC 322 (405)
Q Consensus 246 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~ 322 (405)
+|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++..+. .+
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l 262 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccC
Confidence 454443 899999999999998888999999999999999999998777789999999999999999997654 46
Q ss_pred CCCCcccCCCCCCCCCCCC-C---------CccccccccCCCCCC
Q 045950 323 LNLKDKDDRQNCIPNRPLQ-R---------SAMECKSFYAHPVDC 357 (405)
Q Consensus 323 ~~L~~L~l~~N~l~~~p~~-~---------~~~~~~~~~~np~~C 357 (405)
.+|++|++++|.|++++.. + ..+....+.+||+.+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 7899999999999998643 2 334456678888765
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.2e-30 Score=241.55 Aligned_cols=246 Identities=20% Similarity=0.239 Sum_probs=137.9
Q ss_pred CCCccceecCCCC--C--CCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCc--cchhccCCCCCcEEEC
Q 045950 70 VCNYTGVYCAPAP--D--DPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGT--IPDSFRNMRLLFELDV 143 (405)
Q Consensus 70 ~C~w~gv~c~~~~--~--~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 143 (405)
.|.|.++.|.... . .....+++.|++++|++....+..|.++++|++|++++|+++.. .+..+..+++|++|++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 3788888886421 0 11234677777777777744444467777777777777777632 2455666777777777
Q ss_pred CCCcCCccCchhhhCCCCCcEEeccccccCCCCC-hhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCc
Q 045950 144 STNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIP-SAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNS 220 (405)
Q Consensus 144 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p-~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 220 (405)
++|.++ .++..+..+++|++|++++|++.+..+ ..+..+. |++|++++|.+.+..+..+.. .+|++|++++|.+.+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 777776 455566777777777777777763332 3444444 677777666666554444433 345555555555543
Q ss_pred -CCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhh
Q 045950 221 -CIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESI 299 (405)
Q Consensus 221 -~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 299 (405)
..|..+..+. +|++|++++|++.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus 165 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 165 NFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred ccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 2334444444 45555555555544444444455555555555555544333344444555555555555544444444
Q ss_pred cCCC-CCCEEEccCCcCCC
Q 045950 300 CRLP-KLENFTYSYNFFCS 317 (405)
Q Consensus 300 ~~l~-~L~~L~Ls~N~l~~ 317 (405)
..++ +|+.|++++|.+++
T Consensus 244 ~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCCTTCCEEECTTCCEEC
T ss_pred HhhhccCCEEEccCCCeec
Confidence 4442 45555555554443
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=252.55 Aligned_cols=251 Identities=20% Similarity=0.187 Sum_probs=205.8
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|++++|++.+..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+.++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 35899999999999987777899999999999999999987788899999999999999999965555588999999999
Q ss_pred ccccccCCCCCh--hhhccc-cceeecCCCC-CCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCC
Q 045950 167 IRFNQFEGDIPS--AVFDLK-LDALFINNNK-FSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNT 241 (405)
Q Consensus 167 Ls~N~i~~~~p~--~~~~~~-L~~L~L~~N~-l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n 241 (405)
+++|++. .++. .+..+. |++|++++|. +.+..+..+.. .+|++|++++|.+.+..+..+..+. +|++|++++|
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n 208 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMK 208 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EEEEEEEECS
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc-cCCeecCCCC
Confidence 9999998 5555 566666 9999999984 66555555654 5799999999999988888888887 9999999999
Q ss_pred CCCCCCCccCCCCCCccEEEccCCCCCCCCcccc---CCCCCCCEEEeecCcCcc----cCchhhcCCCCCCEEEccCCc
Q 045950 242 GLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESM---GNMKSLEQLNVAHNKLSG----AIPESICRLPKLENFTYSYNF 314 (405)
Q Consensus 242 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~ 314 (405)
.+.......+..+++|+.|++++|++++..+..+ .....++.++++++.+.+ .+|..+..+++|++|++++|+
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 9864444445568899999999999986554443 345678889999998876 367788899999999999999
Q ss_pred CCCCCC----CCCCCCcccCCCCCCCCCC
Q 045950 315 FCSEPL----TCLNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 315 l~~~~~----~~~~L~~L~l~~N~l~~~p 339 (405)
++..+. .+.+|++|++++|.++...
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 997665 3568999999999888754
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=7.4e-30 Score=258.82 Aligned_cols=149 Identities=25% Similarity=0.327 Sum_probs=102.8
Q ss_pred CCCccceecCCC-------CCCCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEE
Q 045950 70 VCNYTGVYCAPA-------PDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELD 142 (405)
Q Consensus 70 ~C~w~gv~c~~~-------~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 142 (405)
.|.|.|+ |+.. |. ....+++.|++++|++.+..+..|.++++|++|++++|++++..+..|.++++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 3777776 6532 21 1235788888888888888888888888888888888888877777888888888888
Q ss_pred CCCCcCCccCchhhhCCCCCcEEeccccccCC-CCChhhhccc-cceeecCCCCCCCCCC-CCcCC-CCcchhhcccCCC
Q 045950 143 VSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEG-DIPSAVFDLK-LDALFINNNKFSSSLP-KNIGN-SPVSVLVLANNNL 218 (405)
Q Consensus 143 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~-~~p~~~~~~~-L~~L~L~~N~l~~~~~-~~~~~-~~L~~L~L~~n~l 218 (405)
+++|++++..+..|+++++|++|++++|++.+ ..+..+..+. |++|++++|.+.+.++ ..+.. .+|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 88888887666678888888888888888874 2445555555 6666666666333332 22222 3344444444444
Q ss_pred Cc
Q 045950 219 NS 220 (405)
Q Consensus 219 ~~ 220 (405)
.+
T Consensus 161 ~~ 162 (549)
T 2z81_A 161 RN 162 (549)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=256.71 Aligned_cols=251 Identities=17% Similarity=0.131 Sum_probs=185.0
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
...+++.|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 45567777777777777667777777777777777777775545556777777777777777776666666666677777
Q ss_pred eccccccCCCCChhhhccc-cceeecCCCCCCCCCCC------------------------CcCC-CCcchhhcccCCCC
Q 045950 166 DIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPK------------------------NIGN-SPVSVLVLANNNLN 219 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~------------------------~~~~-~~L~~L~L~~n~l~ 219 (405)
++++|++.+..+..+..+. |++|++++|++++..+. .+.. .+|+.|++++|.+.
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 7776666655555555554 66666666665543332 2222 34555555555544
Q ss_pred cCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhh
Q 045950 220 SCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESI 299 (405)
Q Consensus 220 ~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 299 (405)
+.++....... +|++|++++|++.+..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..|
T Consensus 214 ~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 214 DTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred cccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 44444444444 78888888888886555678899999999999999998888889999999999999999998889999
Q ss_pred cCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCCCC
Q 045950 300 CRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPN 337 (405)
Q Consensus 300 ~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~ 337 (405)
..+++|+.|++++|+|++.++ .+.+|+.|++++|.+..
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 999999999999999998876 35689999999998864
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-29 Score=260.23 Aligned_cols=268 Identities=19% Similarity=0.168 Sum_probs=224.1
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|+|++|.+.+..+..|+.+++|++|+|++|.+++..+..|+++++|++|+|++|.+++..+..|..+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 46899999999999988888999999999999999999988888899999999999999999965556678999999999
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC--------------------------------------CC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN--------------------------------------SP 207 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~--------------------------------------~~ 207 (405)
|++|.+.+..|..+..+. |++|++++|.+++.....+.. .+
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 999999977777788777 999999999887543221111 24
Q ss_pred cchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEee
Q 045950 208 VSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVA 287 (405)
Q Consensus 208 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 287 (405)
|+.|++++|.+++ +..+..+. +|++|++++|.+.+..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|+|+
T Consensus 234 L~~L~L~~n~l~~--~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 234 LTILKLQHNNLTD--TAWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCEEECCSSCCCC--CGGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred CCEEECCCCCCCC--ChhhccCC-CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence 6677777777775 36677777 99999999999999999999999999999999999995 67778889999999999
Q ss_pred cCcCcccCchhhcCCCCCCEEEccCCcCCCCCC-CCCCCCcccCCCCCCCCCC--CCCCccccccccCCCCCCCC
Q 045950 288 HNKLSGAIPESICRLPKLENFTYSYNFFCSEPL-TCLNLKDKDDRQNCIPNRP--LQRSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 288 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~L~~L~l~~N~l~~~p--~~~~~~~~~~~~~np~~C~~ 359 (405)
+|.++ .+|..+..+++|+.|+|++|.|++... .+.+|+.|++++|.+.... ..+..+.-..+.+++..|..
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCc
Confidence 99999 788888999999999999999998765 5689999999999986531 22333333446677777764
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.4e-29 Score=239.17 Aligned_cols=259 Identities=20% Similarity=0.287 Sum_probs=220.8
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
+++.++++++++. .+|..+. ++|+.|++++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6788999999998 6676653 799999999999997778889999999999999999998889999999999999999
Q ss_pred ccccCCCCChhhhccccceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCc--CCchHHHhhcccCcEEEccCCCCCC
Q 045950 169 FNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNS--CIPSSLTKMAGTLNEIILLNTGLTG 245 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~--~~p~~l~~l~~~L~~L~l~~n~l~~ 245 (405)
+|++. .+|..+. ..|++|++++|++.+..+..+.. .+|+.|++++|.+.. ..+..+..+ +|++|++++|++.+
T Consensus 111 ~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCc
Confidence 99998 7777666 44999999999999666665654 679999999999963 556666555 89999999999986
Q ss_pred CCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC---CC
Q 045950 246 CFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL---TC 322 (405)
Q Consensus 246 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~ 322 (405)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++..+. .+
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l 263 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGC
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcC
Confidence 555443 789999999999998888899999999999999999998777789999999999999999997655 46
Q ss_pred CCCCcccCCCCCCCCCCCC----------CCccccccccCCCCCC
Q 045950 323 LNLKDKDDRQNCIPNRPLQ----------RSAMECKSFYAHPVDC 357 (405)
Q Consensus 323 ~~L~~L~l~~N~l~~~p~~----------~~~~~~~~~~~np~~C 357 (405)
.+|+.|++++|.|++++.. +..+....+.+||+.+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 7899999999999988643 2234556788888764
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.4e-29 Score=244.95 Aligned_cols=228 Identities=22% Similarity=0.207 Sum_probs=171.6
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|+|++|++.+..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++|+++...+..|..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 35788888999888888888888888999999999988877778888888899999999988866666788888899999
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCCCCC-CcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPK-NIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGL 243 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~-~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 243 (405)
|++|++....+..+..+. |++|++++|...+.++. .+.. .+|++|++++|.++. +| .+..+. +|++|++++|++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~-~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLI-KLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCS-SCCEEECTTSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCc-ccCEEECCCCcc
Confidence 998888854455666666 88888888544434433 3433 567777777777764 33 355555 777777777777
Q ss_pred CCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCC
Q 045950 244 TGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCS 317 (405)
Q Consensus 244 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 317 (405)
.+..+..|..+++|+.|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 77777777777777777777777776667777777777777777777776555666777777777777777654
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=6.3e-29 Score=258.46 Aligned_cols=273 Identities=17% Similarity=0.216 Sum_probs=219.5
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCc--cchhccC--CCCCcEEECCCCcCCccCchhhhCCCC
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGT--IPDSFRN--MRLLFELDVSTNQFSGCFPSVVLCLPS 161 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 161 (405)
...+++.|++++|++.+..+..|.++++|++|++++|.+... ....|.. ..+|++|++++|++++..+..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 345677777777777776667777777777777777764422 1122322 246888888888888878888999999
Q ss_pred CcEEeccccccCCCCC-hhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCC--cCCchHHHhhcccCcEE
Q 045950 162 LKFLDIRFNQFEGDIP-SAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLN--SCIPSSLTKMAGTLNEI 236 (405)
Q Consensus 162 L~~L~Ls~N~i~~~~p-~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~--~~~p~~l~~l~~~L~~L 236 (405)
|++|++++|++.+.++ ..+..+. |++|++++|++.+..+..+.. .+|+.|++++|.+. +..|..+..+. +|++|
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~L 485 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTIL 485 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC-CCCEE
Confidence 9999999999987666 5666666 999999999988777777655 67999999999986 45778888888 99999
Q ss_pred EccCCCCCCCCCccCCCCCCccEEEccCCCCCCCC--------ccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEE
Q 045950 237 ILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPL--------PESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENF 308 (405)
Q Consensus 237 ~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 308 (405)
++++|++.+..+..|..+++|+.|++++|++++.. ...+.++++|++|+|++|+|+...+..|.++++|++|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 99999999888888999999999999999998531 1237889999999999999994444568999999999
Q ss_pred EccCCcCCCCCC----CCCCCCcccCCCCCCCCCCC-----CCCccccccccCCCCCCCC
Q 045950 309 TYSYNFFCSEPL----TCLNLKDKDDRQNCIPNRPL-----QRSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 309 ~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~-----~~~~~~~~~~~~np~~C~~ 359 (405)
++++|++++.++ .+.+|+.|++++|.|++++. .+..++...+.+||+.|+.
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999999998876 35789999999999999875 3466777889999999974
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=9.5e-29 Score=263.07 Aligned_cols=252 Identities=21% Similarity=0.208 Sum_probs=166.6
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCcc-chhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTI-PDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
..+++.|||++|.+.+..+..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 457888888888888888888888888888888888655455 6778888888888888888887778888888888888
Q ss_pred eccccccCCCCChh--hhccc-cceeecCCCCCCCCCC-CCcCC-CCcchhhcccCCCCcCCchHHHhh--ccc------
Q 045950 166 DIRFNQFEGDIPSA--VFDLK-LDALFINNNKFSSSLP-KNIGN-SPVSVLVLANNNLNSCIPSSLTKM--AGT------ 232 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~--~~~~~-L~~L~L~~N~l~~~~~-~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l--~~~------ 232 (405)
+|++|.+.+.++.. +..+. |++|++++|.+++..+ ..++. .+|++|++++|.+.+..+..+..+ . +
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~-~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC-SSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC-ccceEEC
Confidence 88888887656654 56666 8888888888876544 34443 567788888887776666655544 2 3
Q ss_pred ------------------------CcEEEccCCCCCCCCCccCCC-----------------------------------
Q 045950 233 ------------------------LNEIILLNTGLTGCFPQDIGL----------------------------------- 253 (405)
Q Consensus 233 ------------------------L~~L~l~~n~l~~~~p~~~~~----------------------------------- 253 (405)
|++|++++|.+.+..+..+..
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 444444444333222211110
Q ss_pred ---CCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCC
Q 045950 254 ---LNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLK 326 (405)
Q Consensus 254 ---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~ 326 (405)
.++|+.|++++|.+.+..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++|++++..+ .+.+|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 1345555555555555555556666666666666666665555566666666666666666655543 244566
Q ss_pred cccCCCCCCCCCC
Q 045950 327 DKDDRQNCIPNRP 339 (405)
Q Consensus 327 ~L~l~~N~l~~~p 339 (405)
.|++++|.|+.++
T Consensus 342 ~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 342 YIDLQKNHIAIIQ 354 (844)
T ss_dssp EEECCSCCCCCCC
T ss_pred EEECCCCCCCccC
Confidence 6666666665554
No 33
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.9e-29 Score=247.09 Aligned_cols=228 Identities=19% Similarity=0.157 Sum_probs=158.8
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|+|++|++.+..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35788888888888888888888888888888888888877777888888888888888888866666688888888888
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCCCCC-CcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPK-NIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGL 243 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~-~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 243 (405)
|++|++....+..+..+. |++|++++|...+.++. .+.. .+|++|++++|++++. | .+..+. +|++|++++|++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~-~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLV-GLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCT-TCCEEECTTSCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccc-cccEEECcCCcC
Confidence 888888744444566666 88888887544333333 2322 4566666666666642 2 344444 666666666666
Q ss_pred CCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCC
Q 045950 244 TGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCS 317 (405)
Q Consensus 244 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 317 (405)
.+..+..|..+++|+.|+|++|++.+..+..|.++++|++|+|++|+|++..+..+..+++|+.|+|++|.+..
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 66666666666666666666666666556666666666666666666665444555666666666666666543
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=261.53 Aligned_cols=255 Identities=20% Similarity=0.204 Sum_probs=193.0
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchh--ccCCCCCcEEECCCCcCCccCc-hhhhCCCCC
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDS--FRNMRLLFELDVSTNQFSGCFP-SVVLCLPSL 162 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L 162 (405)
...+++.|+|++|++.+..|..|+++++|++|+|++|.+++.++.. |.++++|++|+|++|.+++..+ ..|.++++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 4567788888888888777778888888888888888887655554 7778888888888888875544 567788888
Q ss_pred cEEeccccccCCCCChhhhcc--c-cceeecCCCCCCCCCCCCcCC-------CCcchhhcccCCCCcCCchHHHhh---
Q 045950 163 KFLDIRFNQFEGDIPSAVFDL--K-LDALFINNNKFSSSLPKNIGN-------SPVSVLVLANNNLNSCIPSSLTKM--- 229 (405)
Q Consensus 163 ~~L~Ls~N~i~~~~p~~~~~~--~-L~~L~L~~N~l~~~~~~~~~~-------~~L~~L~L~~n~l~~~~p~~l~~l--- 229 (405)
++|+|++|.+.+..+..+..+ . |++|++++|.+.+..+..++. ..|+.|++++|.+.+..+..+...
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 888888888877677666654 3 777777777777666554432 237888888887766555444322
Q ss_pred ----------------------------------cccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCcccc
Q 045950 230 ----------------------------------AGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESM 275 (405)
Q Consensus 230 ----------------------------------~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 275 (405)
..+|+.|++++|.+.+..+..|..+++|+.|+|++|++.+..+..|
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 1268888888888888888888888888888888888887777788
Q ss_pred CCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCCCCCCC
Q 045950 276 GNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPNRPL 340 (405)
Q Consensus 276 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~ 340 (405)
.++++|++|+|++|++++..+..|..+++|+.|++++|++.+..+ .+.+|+.|++++|.+++++.
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 888888888888888887777788888888888888888877665 35678888888888777653
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.3e-29 Score=232.66 Aligned_cols=243 Identities=19% Similarity=0.233 Sum_probs=210.6
Q ss_pred EEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCcc--CchhhhCCCCCcEEecc
Q 045950 91 AGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGC--FPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 91 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls 168 (405)
+.++.++++++ .+|..+. ++|++|++++|+++...+..|.++++|++|++++|+++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46899999988 5565443 7899999999999965555689999999999999999833 36778889999999999
Q ss_pred ccccCCCCChhhhccc-cceeecCCCCCCCCCC-CCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCC
Q 045950 169 FNQFEGDIPSAVFDLK-LDALFINNNKFSSSLP-KNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTG 245 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~-~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 245 (405)
+|.+. .++..+..+. |++|++++|++++..+ ..+.. .+|++|++++|.+.+..+..+..+. +|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCcccc
Confidence 99998 6777777777 9999999999986554 34443 6799999999999988888888887 99999999999987
Q ss_pred -CCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCC---
Q 045950 246 -CFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLT--- 321 (405)
Q Consensus 246 -~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~--- 321 (405)
.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.++.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 5788999999999999999999988889999999999999999999977777889999999999999999987763
Q ss_pred -C-CCCCcccCCCCCCCCC
Q 045950 322 -C-LNLKDKDDRQNCIPNR 338 (405)
Q Consensus 322 -~-~~L~~L~l~~N~l~~~ 338 (405)
+ .+|++|++++|.++..
T Consensus 245 ~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCTTCCEEECTTCCEECS
T ss_pred hhhccCCEEEccCCCeecc
Confidence 4 4899999999998764
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.1e-28 Score=234.43 Aligned_cols=224 Identities=17% Similarity=0.176 Sum_probs=204.2
Q ss_pred CCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-ccee
Q 045950 110 LLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDAL 188 (405)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L 188 (405)
...+++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|+|++|++. .+|..+..+. |++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999999 78888999999999999999999 89999999999999999999999 8999999888 9999
Q ss_pred ecCCCCCCCCCCCCcC----------CCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCcc
Q 045950 189 FINNNKFSSSLPKNIG----------NSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVT 258 (405)
Q Consensus 189 ~L~~N~l~~~~~~~~~----------~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 258 (405)
++++|.+.+.+|..++ ..+|++|++++|.++ .+|..+..+. +|++|++++|++.+ +|..+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-TCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-CCCEEEccCCCCCc-CchhhccCCCCC
Confidence 9999999989988775 567999999999999 6888899988 99999999999995 666799999999
Q ss_pred EEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCC
Q 045950 259 VFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNC 334 (405)
Q Consensus 259 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~ 334 (405)
+|++++|++.+.+|..+..+++|++|+|++|.+.+.+|..+.++++|++|++++|++.+.+| .+.+|+.+++..|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887 46788889888876
Q ss_pred CCCCC
Q 045950 335 IPNRP 339 (405)
Q Consensus 335 l~~~p 339 (405)
+....
T Consensus 313 ~~~l~ 317 (328)
T 4fcg_A 313 QAQLD 317 (328)
T ss_dssp SCC--
T ss_pred HHHHh
Confidence 66554
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=9.4e-29 Score=250.69 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=69.8
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCc-cCchhhhCCCCCcE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSG-CFPSVVLCLPSLKF 164 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~ 164 (405)
...++++|++++|++.+..+..|..+++|++|++++|++++..+..|+++++|++|++++|++++ ..|..+.++++|++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 45577777777777777777777777777777777777776666667777777777777777764 23455666666666
Q ss_pred EeccccccCCCCC-hhhhccc-cceeecCCCCCC
Q 045950 165 LDIRFNQFEGDIP-SAVFDLK-LDALFINNNKFS 196 (405)
Q Consensus 165 L~Ls~N~i~~~~p-~~~~~~~-L~~L~L~~N~l~ 196 (405)
|++++|++.+.++ ..+..+. |++|++++|.++
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 6666665322333 2333333 444444444443
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=7e-29 Score=237.99 Aligned_cols=270 Identities=17% Similarity=0.235 Sum_probs=221.7
Q ss_pred CCCCCccceecCCCCCCCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCc
Q 045950 68 PDVCNYTGVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQ 147 (405)
Q Consensus 68 ~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 147 (405)
...|.|.|+ | +.++++++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|+
T Consensus 27 ~~~C~~~~~-c---------------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 27 SLSCDRNGI-C---------------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp CCEECTTSE-E---------------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCCCeE-e---------------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 356888876 6 45677777 5666554 589999999999997666689999999999999999
Q ss_pred CCccCchhhhCCCCCcEEeccccccCCCCChh-hhccc-cceeecCCCCCCCCCC-CCcCC-CCcchhhcccCC-CCcCC
Q 045950 148 FSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSA-VFDLK-LDALFINNNKFSSSLP-KNIGN-SPVSVLVLANNN-LNSCI 222 (405)
Q Consensus 148 l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~-~~~~~-L~~L~L~~N~l~~~~~-~~~~~-~~L~~L~L~~n~-l~~~~ 222 (405)
+++..+..|.++++|++|++++|+++ .++.. +..+. |++|++++|++++... ..+.. .+|++|++++|. +.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 99888888999999999999999999 45544 67776 9999999999995433 34543 689999999994 77666
Q ss_pred chHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCcc-ccCCCCCCCEEEeecCcCcccCchhhc-
Q 045950 223 PSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPE-SMGNMKSLEQLNVAHNKLSGAIPESIC- 300 (405)
Q Consensus 223 p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~- 300 (405)
+..+..+. +|++|++++|++.+..+..+..+++|++|++++|++. .++. .+..+++|++|++++|.+++..+..+.
T Consensus 167 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 167 RKDFAGLT-FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp TTTTTTCC-EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred HHHccCCC-CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccc
Confidence 77888887 9999999999999998999999999999999999997 4444 345689999999999999976554433
Q ss_pred --CCCCCCEEEccCCcCCCC--------CCCCCCCCcccCCCCCCCCCCCC----CCccccccccCCCCCCCC
Q 045950 301 --RLPKLENFTYSYNFFCSE--------PLTCLNLKDKDDRQNCIPNRPLQ----RSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 301 --~l~~L~~L~Ls~N~l~~~--------~~~~~~L~~L~l~~N~l~~~p~~----~~~~~~~~~~~np~~C~~ 359 (405)
....++.+++++|.+++. ...+.+|+.|++++|.|+.+|.. ...++...+.+|++.|+.
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 467899999999998873 12578999999999999998854 355666789999999973
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6.4e-28 Score=254.63 Aligned_cols=259 Identities=19% Similarity=0.228 Sum_probs=185.5
Q ss_pred cEEEEECCCCCCcccCCc--cccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCC-CcEE
Q 045950 89 TVAGIDLNHANIAGTLPE--ELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPS-LKFL 165 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L 165 (405)
+++.|+|++|++. .+|. .|+++++|+.|+|++|+++ .+| .|+.+++|++|+|++|+++ .+|..+..+++ |++|
T Consensus 549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 4555555555555 5555 5666666666666666666 555 5666666666666666666 56666666666 7777
Q ss_pred eccccccCCCCChhhhccc---cceeecCCCCCCCCCCCCc------CCCCcchhhcccCCCCcCCchHHH-hhcccCcE
Q 045950 166 DIRFNQFEGDIPSAVFDLK---LDALFINNNKFSSSLPKNI------GNSPVSVLVLANNNLNSCIPSSLT-KMAGTLNE 235 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~~~~~~---L~~L~L~~N~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~p~~l~-~l~~~L~~ 235 (405)
+|++|++. .+|..+.... |++|++++|++.+.+|... ...+|+.|++++|.+. .+|..+. .+. +|++
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~-~L~~ 701 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGS-PIST 701 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTC-CCSE
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCC-CCCE
Confidence 77777666 6665554442 6777777777766554322 2236888888888888 4666665 455 8999
Q ss_pred EEccCCCCCCCCCccCCC--------CCCccEEEccCCCCCCCCccccC--CCCCCCEEEeecCcCcccCchhhcCCCCC
Q 045950 236 IILLNTGLTGCFPQDIGL--------LNQVTVFDVGFNNLVGPLPESMG--NMKSLEQLNVAHNKLSGAIPESICRLPKL 305 (405)
Q Consensus 236 L~l~~n~l~~~~p~~~~~--------l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 305 (405)
|++++|++. .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 999999998 55544333 238999999999999 7888887 89999999999999996 78889999999
Q ss_pred CEEEccC------CcCCCCCC----CCCCCCcccCCCCCCCCCCCCC-CccccccccCCCCCC
Q 045950 306 ENFTYSY------NFFCSEPL----TCLNLKDKDDRQNCIPNRPLQR-SAMECKSFYAHPVDC 357 (405)
Q Consensus 306 ~~L~Ls~------N~l~~~~~----~~~~L~~L~l~~N~l~~~p~~~-~~~~~~~~~~np~~C 357 (405)
+.|+|++ |++.+.+| .+.+|+.|++++|.|..+|..+ +.++...+.+|++..
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTCE
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCCc
Confidence 9999976 77777766 4678999999999998887643 455556778887653
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.3e-28 Score=240.33 Aligned_cols=239 Identities=18% Similarity=0.158 Sum_probs=204.9
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccc
Q 045950 92 GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQ 171 (405)
Q Consensus 92 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 171 (405)
.++.++.++. .+|..+. +++++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 3455566666 4565554 689999999999998888999999999999999999998888999999999999999999
Q ss_pred cCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccC-CCCcCCchHHHhhcccCcEEEccCCCCCCCCC
Q 045950 172 FEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANN-NLNSCIPSSLTKMAGTLNEIILLNTGLTGCFP 248 (405)
Q Consensus 172 i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n-~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p 248 (405)
+++..+..+..+. |++|++++|+++...+..+.. .+|+.|++++| .+....+..+..+. +|++|++++|++.+. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSC-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCccccc-c
Confidence 9955555577676 999999999999655555654 67999999995 45443444577777 999999999999865 3
Q ss_pred ccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCC
Q 045950 249 QDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLN 324 (405)
Q Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~ 324 (405)
.+..+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|+|++.++ .+.+
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 58899999999999999998889999999999999999999998889999999999999999999998876 3578
Q ss_pred CCcccCCCCCCC
Q 045950 325 LKDKDDRQNCIP 336 (405)
Q Consensus 325 L~~L~l~~N~l~ 336 (405)
|+.|++++|.+.
T Consensus 292 L~~L~L~~Np~~ 303 (452)
T 3zyi_A 292 LVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEccCCCcC
Confidence 999999999764
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=8.9e-28 Score=249.77 Aligned_cols=251 Identities=17% Similarity=0.170 Sum_probs=167.6
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+++.|++++|++.+..+..|.++++|++|++++|.+++..+..|+++++|++|++++|++++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57888888888888777777888888888888888888777888888888888888888888544456888888888888
Q ss_pred cccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHh--hcccCcEEEccCCCC
Q 045950 168 RFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTK--MAGTLNEIILLNTGL 243 (405)
Q Consensus 168 s~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~--l~~~L~~L~l~~n~l 243 (405)
++|++.+..+..+..+. |++|++++|.+++..+..++. .+|++|++++|.+++..+..+.. .. +|++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC-EESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc-cccEEECCCCcc
Confidence 88888755556677666 888888888887766666544 56777777777776655554432 23 566666666655
Q ss_pred CCCCCc---------------------------------------------------cCCCCCC--ccEEEccCCCCCCC
Q 045950 244 TGCFPQ---------------------------------------------------DIGLLNQ--VTVFDVGFNNLVGP 270 (405)
Q Consensus 244 ~~~~p~---------------------------------------------------~~~~l~~--L~~L~L~~N~l~~~ 270 (405)
.+..+. .+..++. |+.|++++|++.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 544443 3333332 66666666666655
Q ss_pred CccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCC-------------CCCCCCCCcccCCCCCCCC
Q 045950 271 LPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSE-------------PLTCLNLKDKDDRQNCIPN 337 (405)
Q Consensus 271 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-------------~~~~~~L~~L~l~~N~l~~ 337 (405)
.+..|..+++|++|++++|++++..+..+.++++|+.|++++|...+. ...+.+|++|++++|.+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 556666666666666666666655555555555555555554433211 1124456666666666665
Q ss_pred CC
Q 045950 338 RP 339 (405)
Q Consensus 338 ~p 339 (405)
++
T Consensus 344 ~~ 345 (680)
T 1ziw_A 344 IK 345 (680)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=8.4e-28 Score=237.40 Aligned_cols=239 Identities=18% Similarity=0.195 Sum_probs=205.6
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccc
Q 045950 92 GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQ 171 (405)
Q Consensus 92 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 171 (405)
.++.+++++. .+|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4556667776 5666554 789999999999998888899999999999999999998888899999999999999999
Q ss_pred cCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCC-CCcCCchHHHhhcccCcEEEccCCCCCCCCC
Q 045950 172 FEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNN-LNSCIPSSLTKMAGTLNEIILLNTGLTGCFP 248 (405)
Q Consensus 172 i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~-l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p 248 (405)
++...+..+..+. |++|++++|.+....+..+.. .+|+.|++++|. +....+..+..+. +|++|++++|++.. +|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCSS-CC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCcc-cc
Confidence 9955455677777 999999999999666656655 679999999955 4443444677777 99999999999984 44
Q ss_pred ccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCC
Q 045950 249 QDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLN 324 (405)
Q Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~ 324 (405)
.+..+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|+|++.++ .+.+
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 58899999999999999998889999999999999999999998888899999999999999999998876 3578
Q ss_pred CCcccCCCCCCC
Q 045950 325 LKDKDDRQNCIP 336 (405)
Q Consensus 325 L~~L~l~~N~l~ 336 (405)
|+.|++++|.+.
T Consensus 281 L~~L~L~~Np~~ 292 (440)
T 3zyj_A 281 LERIHLHHNPWN 292 (440)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEcCCCCcc
Confidence 999999999864
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=246.55 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=101.1
Q ss_pred cCcEEEccCCCCCCCCC-ccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCc-ccCchhhcCCCCCCEEE
Q 045950 232 TLNEIILLNTGLTGCFP-QDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLS-GAIPESICRLPKLENFT 309 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~ 309 (405)
+|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.++ +.+|..+..+++|++|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 44444444444444433 45778888888888888888888888889999999999999987 56888899999999999
Q ss_pred ccCCcCCCCCC----CCCCCCcccCCCCCCCCCCCC----CCccccccccCCCCCCC
Q 045950 310 YSYNFFCSEPL----TCLNLKDKDDRQNCIPNRPLQ----RSAMECKSFYAHPVDCG 358 (405)
Q Consensus 310 Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~~----~~~~~~~~~~~np~~C~ 358 (405)
+++|++++..+ .+.+|+.|++++|.+++.+.. ...++...+.+|++.|+
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99999998865 467899999999999998643 35566678999999986
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.3e-27 Score=222.15 Aligned_cols=225 Identities=17% Similarity=0.206 Sum_probs=167.5
Q ss_pred EEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecccc
Q 045950 91 AGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170 (405)
Q Consensus 91 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 170 (405)
+.++.+++++. .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666777766 344433 467778888888887666666777788888888888877666777777788888888887
Q ss_pred c-cCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCC
Q 045950 171 Q-FEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCF 247 (405)
Q Consensus 171 ~-i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 247 (405)
+ +....+..+..+. |++|++++|.+++..+..+.. .+|++|++++|.+.+..+..+..+. +|++|++++|++.+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccC
Confidence 6 6644456666665 778888777777665655543 5677777777777765555566666 8888888888888766
Q ss_pred CccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCC
Q 045950 248 PQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEP 319 (405)
Q Consensus 248 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 319 (405)
+..+..+++|+.|++++|++.+..|..|..+++|++|++++|++++..+..+..+++|+.|++++|.+....
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 667888888888888888888777888888888888888888888666667888888888888888887644
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.4e-30 Score=244.10 Aligned_cols=243 Identities=19% Similarity=0.178 Sum_probs=190.9
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCC-Cccchhcc-------CCCCCcEEECCCCcCCccCchhh--
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFC-GTIPDSFR-------NMRLLFELDVSTNQFSGCFPSVV-- 156 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l-- 156 (405)
..+++.|++++|.+ .+|..+... |+.|+|++|.++ ..++..+. ++++|++|++++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34677788888888 677766544 888999999884 45666555 78999999999999998888876
Q ss_pred hCCCCCcEEeccccccCCCCChhhhcc-----c-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcC--CchHH-
Q 045950 157 LCLPSLKFLDIRFNQFEGDIPSAVFDL-----K-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSC--IPSSL- 226 (405)
Q Consensus 157 ~~l~~L~~L~Ls~N~i~~~~p~~~~~~-----~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~--~p~~l- 226 (405)
..+++|++|+|++|++++. |..+..+ . |++|++++|++.+..+..++. .+|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8899999999999999865 7777665 5 999999999998777777765 6799999999988764 23344
Q ss_pred -HhhcccCcEEEccCCCCCCC---CCccCCCCCCccEEEccCCCCCCCCc-cccCCCCCCCEEEeecCcCcccCchhhcC
Q 045950 227 -TKMAGTLNEIILLNTGLTGC---FPQDIGLLNQVTVFDVGFNNLVGPLP-ESMGNMKSLEQLNVAHNKLSGAIPESICR 301 (405)
Q Consensus 227 -~~l~~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 301 (405)
..+. +|++|++++|++.+. ....+..+++|++|++++|++++..| ..+..+++|++|+|++|+|+ .+|..+.
T Consensus 197 ~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 197 PLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp TTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred hccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 5565 899999999988732 12334577899999999999987664 45667889999999999998 7787765
Q ss_pred CCCCCEEEccCCcCCCCCC--CCCCCCcccCCCCCCCCC
Q 045950 302 LPKLENFTYSYNFFCSEPL--TCLNLKDKDDRQNCIPNR 338 (405)
Q Consensus 302 l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~ 338 (405)
++|++||+++|+|++.+. .+.+|++|++++|.|++.
T Consensus 274 -~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTCC
T ss_pred -CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCCC
Confidence 789999999999988743 456788899999988764
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=241.66 Aligned_cols=266 Identities=18% Similarity=0.179 Sum_probs=207.3
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+++.|++++|++.+..+..|.++++|++|++++|++++..|..|.++++|++|+|++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 68999999999999888889999999999999999999888999999999999999999999 67766 8999999999
Q ss_pred cccccCC-CCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCC--CcCCchHHHhhc-------------
Q 045950 168 RFNQFEG-DIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNL--NSCIPSSLTKMA------------- 230 (405)
Q Consensus 168 s~N~i~~-~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l--~~~~p~~l~~l~------------- 230 (405)
++|++.+ .+|..+..+. |++|++++|.+++.....+....++.|++++|.+ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 9999986 5788999888 9999999999986322222222349999999998 555554443311
Q ss_pred ---------------------------------------------------------------------ccCcEEEccCC
Q 045950 231 ---------------------------------------------------------------------GTLNEIILLNT 241 (405)
Q Consensus 231 ---------------------------------------------------------------------~~L~~L~l~~n 241 (405)
.+|++|++++|
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 16888888888
Q ss_pred CCCCCCCccC-----------------------------------------------------CCCCCccEEEccCCCCC
Q 045950 242 GLTGCFPQDI-----------------------------------------------------GLLNQVTVFDVGFNNLV 268 (405)
Q Consensus 242 ~l~~~~p~~~-----------------------------------------------------~~l~~L~~L~L~~N~l~ 268 (405)
++.+.+|..+ ..+++|++|++++|+++
T Consensus 258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp EEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred cccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccC
Confidence 8887777665 55677788888888888
Q ss_pred CCCccccCCCCCCCEEEeecCcCcc--cCchhhcCCCCCCEEEccCCcCCCCCC-----CCCCCCcccCCCCCCCCC-CC
Q 045950 269 GPLPESMGNMKSLEQLNVAHNKLSG--AIPESICRLPKLENFTYSYNFFCSEPL-----TCLNLKDKDDRQNCIPNR-PL 340 (405)
Q Consensus 269 ~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~~~-p~ 340 (405)
+.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.++ .+.+|+.|++++|.+++. +.
T Consensus 338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417 (520)
T ss_dssp TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh
Confidence 7777778888888888888888875 455677788888888888888877322 346788888888887643 22
Q ss_pred CC-CccccccccCCCCC
Q 045950 341 QR-SAMECKSFYAHPVD 356 (405)
Q Consensus 341 ~~-~~~~~~~~~~np~~ 356 (405)
.+ ..++...+.+|.+.
T Consensus 418 ~l~~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 418 CLPPRIKVLDLHSNKIK 434 (520)
T ss_dssp SCCTTCCEEECCSSCCC
T ss_pred hhcccCCEEECCCCccc
Confidence 22 34555556666554
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.3e-27 Score=245.11 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=117.4
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|++++|++.+..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 36788999999999888888888999999999999998877788888899999999999999877788888899999999
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCC-CCCCCcCC-CCcchhhcccCCCCcCCchHHHhhc
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSS-SLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMA 230 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~-~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~ 230 (405)
+++|++.+..+..+..+. |++|++++|.+.+ .+|..++. .+|++|++++|++.+..+..+..+.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 999988855556777776 8999999888875 45776655 5688888888888876665555443
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=4.7e-27 Score=216.89 Aligned_cols=219 Identities=17% Similarity=0.196 Sum_probs=173.1
Q ss_pred CCCCCccceecCCCCCCCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCc
Q 045950 68 PDVCNYTGVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQ 147 (405)
Q Consensus 68 ~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 147 (405)
.+.|.|.|+.|.. ..+++.+++++++++ .+|..+. .+|++|++++|++++..+..|.++++|++|++++|+
T Consensus 2 ~~~C~~~~~~C~c------~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 2 EALCKKDGGVCSC------NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp CCCBGGGTCSBEE------ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred CccCCCCCCCCEe------CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence 4789999999974 235678999999998 4666554 689999999999997777789999999999999999
Q ss_pred CCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHH
Q 045950 148 FSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSL 226 (405)
Q Consensus 148 l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 226 (405)
++...+..|..+++|++|++++|++.+..+..+..+. |++|++++|.+++..+ ..+
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~ 129 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-----------------------RVF 129 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-----------------------TTT
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH-----------------------HHh
Confidence 9966566678899999999999999844444555555 7777777777764322 233
Q ss_pred HhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCC
Q 045950 227 TKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLE 306 (405)
Q Consensus 227 ~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 306 (405)
..+. +|++|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|+
T Consensus 130 ~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 130 DSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CcCc-CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 4444 788888888888877666788888899999998888866666788888899999999988865555677888889
Q ss_pred EEEccCCcCCCCC
Q 045950 307 NFTYSYNFFCSEP 319 (405)
Q Consensus 307 ~L~Ls~N~l~~~~ 319 (405)
.|++++|.+....
T Consensus 209 ~L~l~~N~~~c~c 221 (270)
T 2o6q_A 209 MLQLQENPWDCTC 221 (270)
T ss_dssp EEECCSSCBCCSS
T ss_pred EEEecCCCeeCCC
Confidence 9999988876543
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6e-28 Score=224.54 Aligned_cols=233 Identities=18% Similarity=0.202 Sum_probs=198.9
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCc-CCccCchhhhCCCCCcE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQ-FSGCFPSVVLCLPSLKF 164 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~ 164 (405)
...+++.|++++|++.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|. ++...+..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 35689999999999998888889999999999999999998878999999999999999997 88666889999999999
Q ss_pred EeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCC
Q 045950 165 LDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTG 242 (405)
Q Consensus 165 L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~ 242 (405)
|++++|++.+..+..+..+. |++|++++|++++..+..+.. .+|++|++++|++++..+..+..+. +|++|++++|.
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc-ccCEEECCCCc
Confidence 99999999977677788777 999999999999766666654 6799999999999976666788887 99999999999
Q ss_pred CCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC
Q 045950 243 LTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL 320 (405)
Q Consensus 243 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 320 (405)
+.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+....+.. .-...++.+..+.|.+.+..|
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEES
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCc
Confidence 99998999999999999999999999877778999999999999999998543321 001123334456666665544
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4.8e-27 Score=239.09 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=70.2
Q ss_pred cCcEEEccCCCCCCCCC-ccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEc
Q 045950 232 TLNEIILLNTGLTGCFP-QDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTY 310 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 310 (405)
+|++|++++|++.+.+| ..+..+++|+.|++++|++++.+|..+. ++|++|+|++|+|+ .+|..+..+++|++|++
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 44444444444444222 2244445555555555555444333332 67888888888888 67887779999999999
Q ss_pred cCCcCCCCCCC----CCCCCcccCCCCCCCCC
Q 045950 311 SYNFFCSEPLT----CLNLKDKDDRQNCIPNR 338 (405)
Q Consensus 311 s~N~l~~~~~~----~~~L~~L~l~~N~l~~~ 338 (405)
++|+|++.++. +.+|+.|++++|.+...
T Consensus 481 ~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 99999987653 56899999999998763
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=235.78 Aligned_cols=177 Identities=16% Similarity=0.143 Sum_probs=143.3
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|++++|++.+..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 45799999999999988888899999999999999999987778899999999999999999977778899999999999
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCC-CCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccC----cEEEcc
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSS-SLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTL----NEIILL 239 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~-~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L----~~L~l~ 239 (405)
+++|++.+..+..+..+. |++|++++|.+.+ .+|..++. .+|++|++++|.+.+..+..+..+. +| +.|+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH-TCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh-ccchhhhhcccC
Confidence 999999844444577776 9999999999986 45777765 6799999999999887777787777 77 788888
Q ss_pred CCCCCCCCCccCCCCCCccEEEccCC
Q 045950 240 NTGLTGCFPQDIGLLNQVTVFDVGFN 265 (405)
Q Consensus 240 ~n~l~~~~p~~~~~l~~L~~L~L~~N 265 (405)
+|.+.+..+..+... +|+.|++++|
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCCceecCHHHhccC-cceeEecccc
Confidence 887766555444333 3444444433
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=7.8e-26 Score=215.99 Aligned_cols=254 Identities=22% Similarity=0.299 Sum_probs=144.0
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
...+++.|++++|++.+. +. +..+++|++|++++|.+++ ++ .|..+++|++|++++|++++ ++. +..+++|++|
T Consensus 64 ~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSL 137 (347)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEE
Confidence 455788888888887754 33 7788888888888888774 33 47788888888888888774 333 6677777777
Q ss_pred eccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCc--------------------h
Q 045950 166 DIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIP--------------------S 224 (405)
Q Consensus 166 ~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p--------------------~ 224 (405)
++++|.....++. +..+. |++|++++|.+.+..+ .....+|+.|++++|.+.+..+ .
T Consensus 138 ~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp ECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred ECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc
Confidence 7777754433333 44444 6666666665553322 1222345555555555543211 0
Q ss_pred HHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCC
Q 045950 225 SLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304 (405)
Q Consensus 225 ~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 304 (405)
.+..+. +|++|++++|++.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++++ + ..+..+++
T Consensus 216 ~~~~~~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~ 288 (347)
T 4fmz_A 216 PVANMT-RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQ 288 (347)
T ss_dssp GGGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTT
T ss_pred hhhcCC-cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCC
Confidence 133333 55555555555553322 55555566666666655532 345555666666666666653 2 23555566
Q ss_pred CCEEEccCCcCCCCCC----CCCCCCcccCCCCCCCCCCC--CCCccccccccCCC
Q 045950 305 LENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPNRPL--QRSAMECKSFYAHP 354 (405)
Q Consensus 305 L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p~--~~~~~~~~~~~~np 354 (405)
|+.|++++|++++..+ .+.+|+.|++++|.+++.+. .++.++...+.+|+
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 6666666666655443 34556666666666665532 22333334444444
No 53
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.5e-26 Score=218.43 Aligned_cols=239 Identities=17% Similarity=0.262 Sum_probs=174.5
Q ss_pred CCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcE
Q 045950 85 PHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKF 164 (405)
Q Consensus 85 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 164 (405)
....+++.|++++|.+.+. +.+..+++|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++
T Consensus 85 ~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~ 159 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNY 159 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCE
T ss_pred hcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcE
Confidence 3556788888888888753 3588888888888888888743 33 6677777777777765442322 2555555555
Q ss_pred EeccccccCC---------------------CCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCC
Q 045950 165 LDIRFNQFEG---------------------DIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCI 222 (405)
Q Consensus 165 L~Ls~N~i~~---------------------~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 222 (405)
|++++|.+.+ .++. +.... |++|++++|.+.+..+ .....+|+.|++++|.+.+..
T Consensus 160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred EEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCc
Confidence 5555555542 2222 22233 5555555555543222 223357899999999998643
Q ss_pred chHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCC
Q 045950 223 PSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRL 302 (405)
Q Consensus 223 p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 302 (405)
+ +..+. +|++|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+..+..+
T Consensus 238 ~--~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 238 P--LANLS-QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp G--GTTCT-TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred c--hhcCC-CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 3 77777 999999999999864 5688999999999999999954 468899999999999999998889999999
Q ss_pred CCCCEEEccCCcCCCCCC--CCCCCCcccCCCCCCCC
Q 045950 303 PKLENFTYSYNFFCSEPL--TCLNLKDKDDRQNCIPN 337 (405)
Q Consensus 303 ~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~ 337 (405)
++|++|++++|++++.++ .+.+|+.|++++|.|+.
T Consensus 311 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347 (347)
T ss_dssp TTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC----
T ss_pred ccCCEEEccCCccccccChhhhhccceeehhhhcccC
Confidence 999999999999999876 57899999999999863
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1e-27 Score=226.49 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=165.0
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
+++.++++.+.+...+...+..+++|++|+|++|++++..+..|.++++|++|++++|++++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 56666777777765555555666778888888888877666777778888888888888775443 7777788888888
Q ss_pred ccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCC
Q 045950 169 FNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFP 248 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p 248 (405)
+|+++ .++.. ..|++|++++|++++..+..+ .+|+.|++++|++++..+..+..+. +|++|++++|.+.+..+
T Consensus 89 ~n~l~-~l~~~---~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQ-ELLVG---PSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEE-EEEEC---TTCCEEECCSSCCSEEEECCC--SSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEEG
T ss_pred CCccc-cccCC---CCcCEEECCCCccCCcCcccc--CCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcccH
Confidence 88776 33211 237788888887775544332 4577788888887766565666666 78888888888776665
Q ss_pred ccC-CCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC---CCCC
Q 045950 249 QDI-GLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL---TCLN 324 (405)
Q Consensus 249 ~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~ 324 (405)
..+ ..+++|++|++++|.+++. +. ...+++|++|+|++|+|++ ++..+..+++|+.|++++|+|++.+. .+.+
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN 238 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCC
Confidence 555 3677788888888887743 32 3347778888888888874 44557777788888888888776544 3457
Q ss_pred CCcccCCCCCCC
Q 045950 325 LKDKDDRQNCIP 336 (405)
Q Consensus 325 L~~L~l~~N~l~ 336 (405)
|+.|++++|.++
T Consensus 239 L~~L~l~~N~~~ 250 (317)
T 3o53_A 239 LEHFDLRGNGFH 250 (317)
T ss_dssp CCEEECTTCCCB
T ss_pred CCEEEccCCCcc
Confidence 778888888776
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=3e-26 Score=235.57 Aligned_cols=252 Identities=19% Similarity=0.205 Sum_probs=195.7
Q ss_pred CCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcE
Q 045950 85 PHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKF 164 (405)
Q Consensus 85 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 164 (405)
....+++.|||++|+|++..+.+|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|+++++|++
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 35678999999999999888888999999999999999999766778899999999999999999666667889999999
Q ss_pred EeccccccCC-CCChhhhccc-cceeecCCCCCCCCCCCCcC--------------------------------------
Q 045950 165 LDIRFNQFEG-DIPSAVFDLK-LDALFINNNKFSSSLPKNIG-------------------------------------- 204 (405)
Q Consensus 165 L~Ls~N~i~~-~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~-------------------------------------- 204 (405)
|+|++|++.. ..|..+..+. |++|++++|++++..+..+.
T Consensus 153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~ 232 (635)
T 4g8a_A 153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 232 (635)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhh
Confidence 9999998864 4566677666 88888888776532211100
Q ss_pred --------------------------------------------------------------------------------
Q 045950 205 -------------------------------------------------------------------------------- 204 (405)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (405)
T Consensus 233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 312 (635)
T 4g8a_A 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS 312 (635)
T ss_dssp SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence
Q ss_pred ---------------------------------------------------------CCCcchhhcccCCCC--------
Q 045950 205 ---------------------------------------------------------NSPVSVLVLANNNLN-------- 219 (405)
Q Consensus 205 ---------------------------------------------------------~~~L~~L~L~~n~l~-------- 219 (405)
..+++.+++++|.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 313 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp EESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred ccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc
Confidence 000111222222221
Q ss_pred ------------------------------------------------------------------cCCchHHHhhcccC
Q 045950 220 ------------------------------------------------------------------SCIPSSLTKMAGTL 233 (405)
Q Consensus 220 ------------------------------------------------------------------~~~p~~l~~l~~~L 233 (405)
+..+..+..+ ..+
T Consensus 393 ~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~-~~L 471 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSL 471 (635)
T ss_dssp HHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTC
T ss_pred hhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc-hhh
Confidence 0001111112 267
Q ss_pred cEEEccCCCC-CCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccC
Q 045950 234 NEIILLNTGL-TGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSY 312 (405)
Q Consensus 234 ~~L~l~~n~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 312 (405)
+.|++++|.+ .+..|..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|||++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 8899999874 445788999999999999999999988899999999999999999999988888899999999999999
Q ss_pred CcCCCCCCC----C-CCCCcccCCCCCCCC
Q 045950 313 NFFCSEPLT----C-LNLKDKDDRQNCIPN 337 (405)
Q Consensus 313 N~l~~~~~~----~-~~L~~L~l~~N~l~~ 337 (405)
|+|++.++. + .+|+.|++++|.+.-
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999998874 3 479999999998764
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=9.3e-26 Score=224.36 Aligned_cols=239 Identities=21% Similarity=0.315 Sum_probs=144.1
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
...+++.|++++|.+.+..+ +..+++|++|++++|.+++..+ +.++++|++|++++|++++. +. +..+++|++|
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L 139 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRL 139 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEE
T ss_pred hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEE
Confidence 45688888999888886543 8888888888888888885444 88888888888888888844 33 7777888888
Q ss_pred eccccccCCCCCh--------------------hhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCc-
Q 045950 166 DIRFNQFEGDIPS--------------------AVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIP- 223 (405)
Q Consensus 166 ~Ls~N~i~~~~p~--------------------~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p- 223 (405)
++++|++.+ ++. .+..+. |++|++++|.+.+. +......+|++|++++|.+.+..+
T Consensus 140 ~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~ 217 (466)
T 1o6v_A 140 ELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPL 217 (466)
T ss_dssp EEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGG
T ss_pred ECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccccc
Confidence 888777763 321 122233 66666666665532 222222445555555555544322
Q ss_pred -------------------hHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEE
Q 045950 224 -------------------SSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQL 284 (405)
Q Consensus 224 -------------------~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 284 (405)
..+..+. +|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|++|
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 292 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred cccCCCCEEECCCCCcccchhhhcCC-CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence 1233333 45555555555543332 4555555555555555553322 5555666666
Q ss_pred EeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC--CCCCCCcccCCCCCCCCCC
Q 045950 285 NVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL--TCLNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 285 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~p 339 (405)
++++|++++..+ +..+++|+.|++++|++++..+ .+.+|+.|++++|.+++.+
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch
Confidence 666666653322 5556666666666666666544 4556666677766666653
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=9.5e-28 Score=226.26 Aligned_cols=223 Identities=19% Similarity=0.242 Sum_probs=188.8
Q ss_pred cEEEEECCCCCC-cccCCcccc-------CCCCCcEEeccCCCCCCccchhc--cCCCCCcEEECCCCcCCccCchhhhC
Q 045950 89 TVAGIDLNHANI-AGTLPEELG-------LLEDLALFHLNSNRFCGTIPDSF--RNMRLLFELDVSTNQFSGCFPSVVLC 158 (405)
Q Consensus 89 ~l~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~~ 158 (405)
.++.|++++|.+ .+.++..+. ++++|++|++++|++++.+|..+ ..+++|++|++++|++++. |..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 378899999999 456777665 79999999999999999888876 8999999999999999966 888877
Q ss_pred C-----CCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCC--CCCc---CCCCcchhhcccCCCCc--CCchH
Q 045950 159 L-----PSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSL--PKNI---GNSPVSVLVLANNNLNS--CIPSS 225 (405)
Q Consensus 159 l-----~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~--~~~~---~~~~L~~L~L~~n~l~~--~~p~~ 225 (405)
+ ++|++|++++|++.+..+..+..+. |++|++++|++.+.. +..+ ...+|++|++++|++++ .++..
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 7 9999999999999977778888887 999999999987542 2222 33679999999999984 22333
Q ss_pred H-HhhcccCcEEEccCCCCCCCCC-ccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCC
Q 045950 226 L-TKMAGTLNEIILLNTGLTGCFP-QDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLP 303 (405)
Q Consensus 226 l-~~l~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 303 (405)
+ ..+. +|++|++++|++.+..+ ..+..+++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. |. +..++
T Consensus 223 ~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~ 296 (312)
T 1wwl_A 223 LAAARV-QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP 296 (312)
T ss_dssp HHHTTC-CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred HHhcCC-CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence 3 3445 99999999999998775 56677899999999999999 7888776 8999999999999955 66 88999
Q ss_pred CCCEEEccCCcCCCC
Q 045950 304 KLENFTYSYNFFCSE 318 (405)
Q Consensus 304 ~L~~L~Ls~N~l~~~ 318 (405)
+|++|++++|++++.
T Consensus 297 ~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 297 QVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEEECTTCTTTCC
T ss_pred CCCEEeccCCCCCCC
Confidence 999999999999864
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1e-26 Score=230.29 Aligned_cols=251 Identities=21% Similarity=0.234 Sum_probs=139.3
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCC-------------cEEECCCCcCCccC
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLL-------------FELDVSTNQFSGCF 152 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~Ls~N~l~~~~ 152 (405)
...+++.|++++|++ +.+|++++++++|++|++++|++.+.+|..++++.+| ++|++++|++++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 345667777777777 5667777777777777777776666666666655432 555555555552 2
Q ss_pred chhh-----------------hCCCCCcEEeccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhccc
Q 045950 153 PSVV-----------------LCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLAN 215 (405)
Q Consensus 153 p~~l-----------------~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~ 215 (405)
|... ..+.+|++|++++|++. .++... ..|++|++++|++++ +|......+|++|++++
T Consensus 87 p~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~-~l~~~~--~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 87 PELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK-ALSDLP--PLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDN 162 (454)
T ss_dssp CSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCCSCC--TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred CCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccC-cccCCC--CCCCEEECcCCCCCC-CcccCCCCCCCEEECCC
Confidence 2210 01245555555555554 222211 127777777777764 55322235677777777
Q ss_pred CCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccC
Q 045950 216 NNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAI 295 (405)
Q Consensus 216 n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 295 (405)
|++++ +|..+ .+|++|++++|++.+ +| .++.+++|++|++++|++++ +|... ++|++|++++|+++ .+
T Consensus 163 N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 163 NSLKK-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-EL 230 (454)
T ss_dssp SCCSC-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SC
T ss_pred CcCcc-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cc
Confidence 77765 44322 277778888877775 44 57778888888888888774 44322 46777777777777 56
Q ss_pred chhhcCCCCCCEEEccCCcCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccccccCCCC
Q 045950 296 PESICRLPKLENFTYSYNFFCSEPLTCLNLKDKDDRQNCIPNRPLQRSAMECKSFYAHPV 355 (405)
Q Consensus 296 p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~~~~~~np~ 355 (405)
|. +..+++|++|++++|++++.+....+|+.|++++|.++++|.....++...+.+|.+
T Consensus 231 p~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 289 (454)
T ss_dssp CC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred cc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCEEECcCCcc
Confidence 63 777888888888888887765555677777777777777665544444445555543
No 59
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.7e-25 Score=221.07 Aligned_cols=257 Identities=23% Similarity=0.295 Sum_probs=181.4
Q ss_pred CCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCch-----------
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPS----------- 154 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----------- 154 (405)
...+++.|++++|.+.+..+ +.++++|++|++++|++++. +. +.++++|++|++++|.+.+ ++.
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~ 162 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLS 162 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEE
T ss_pred ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEee
Confidence 45678888888888775543 77778888888888877743 22 6666666666666666553 111
Q ss_pred ---------hhhCCCCCcEEeccccccCCCCChh---------------------hhccc-cceeecCCCCCCCCCCCCc
Q 045950 155 ---------VVLCLPSLKFLDIRFNQFEGDIPSA---------------------VFDLK-LDALFINNNKFSSSLPKNI 203 (405)
Q Consensus 155 ---------~l~~l~~L~~L~Ls~N~i~~~~p~~---------------------~~~~~-L~~L~L~~N~l~~~~~~~~ 203 (405)
.+..+++|++|++++|++. .++.. +..+. |++|++++|++++ ++...
T Consensus 163 l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~ 240 (466)
T 1o6v_A 163 FGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLA 240 (466)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGG
T ss_pred cCCcccCchhhccCCCCCEEECcCCcCC-CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc-chhhh
Confidence 1334445555555555544 22210 22233 5555555555553 22222
Q ss_pred CCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCE
Q 045950 204 GNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQ 283 (405)
Q Consensus 204 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 283 (405)
...+|+.|++++|.+.+..+ +..+. +|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred cCCCCCEEECCCCccccchh--hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 33568899999999986544 67776 99999999999987654 8899999999999999996544 889999999
Q ss_pred EEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC--CCCCCCcccCCCCCCCCCCC--CCCccccccccCCCCCCC
Q 045950 284 LNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL--TCLNLKDKDDRQNCIPNRPL--QRSAMECKSFYAHPVDCG 358 (405)
Q Consensus 284 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~p~--~~~~~~~~~~~~np~~C~ 358 (405)
|++++|++++..+ +..+++|+.|++++|++++... .+.+|+.|++++|.+++++. ....++...+.+|++...
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEECC
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccCC
Confidence 9999999997655 7789999999999999998743 57899999999999998863 334444456666766553
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=8.5e-25 Score=216.68 Aligned_cols=208 Identities=18% Similarity=0.182 Sum_probs=122.1
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+++.|++++|++.+. | .+..+++|++|++++|++++. + ++.+++|++|++++|++++. + +..+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 3566667776666653 3 466666677777777766643 2 66666677777777666643 2 566666777777
Q ss_pred cccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCC
Q 045950 168 RFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGC 246 (405)
Q Consensus 168 s~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 246 (405)
++|++++ ++ +..+. |++|++++|++++. + .-...+|++|++++|...+.+ .+..+. +|++|++++|++++.
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQT-QLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTCT-TCCEEECCSSCCCCC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccCC-cCCEEECCCCcccee
Confidence 6666663 33 44444 66666666666653 1 112245666666666443333 234444 666666666666542
Q ss_pred CCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC
Q 045950 247 FPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL 320 (405)
Q Consensus 247 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 320 (405)
+ +..+++|+.|++++|++++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++.++
T Consensus 186 -~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 186 -D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp -C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred -c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 2 55566666666666666643 25556666666666666664 44 5556666666666666665543
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.8e-25 Score=206.71 Aligned_cols=207 Identities=16% Similarity=0.176 Sum_probs=120.0
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
+++.|++++|++.+..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555554444445555555555555555554444555555555555555
Q ss_pred ccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCc-CCchHHHhhcccCcEEEccCCCCCCCC
Q 045950 169 FNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNS-CIPSSLTKMAGTLNEIILLNTGLTGCF 247 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~~L~~L~l~~n~l~~~~ 247 (405)
+|++.+..+..+..+. +|++|++++|.+.+ .+|..+..+. +|++|++++|++.+..
T Consensus 109 ~n~l~~~~~~~~~~l~----------------------~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 109 ETNLASLENFPIGHLK----------------------TLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TSCCCCSTTCCCTTCT----------------------TCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEEC
T ss_pred CCCccccCchhcccCC----------------------CCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcCC
Confidence 5555432222333333 34444444444433 2355666665 7777777777776665
Q ss_pred CccCCCCCCcc----EEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCC
Q 045950 248 PQDIGLLNQVT----VFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEP 319 (405)
Q Consensus 248 p~~~~~l~~L~----~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 319 (405)
+..+..+.+|+ .|++++|.+.+..+..+ ...+|++|++++|++++..+..+..+++|+.|++++|.+++..
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred HHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 55665555555 77788888775444433 3347888888888887555555677788888888888877643
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-26 Score=230.16 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=113.1
Q ss_pred CCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccccceeecCC
Q 045950 113 DLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINN 192 (405)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~ 192 (405)
+|+.|+|++|.+++..|..|..+++|++|+|++|.+++..+ +..+++|++|+|++|.+. .++.. ..|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~---~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG---PSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEEC---TTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCC---CCcCEEECcC
Confidence 55555555555555444555555555555555555554333 555555555555555554 22211 1255555555
Q ss_pred CCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCC-CCCCccEEEccCCCCCCCC
Q 045950 193 NKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIG-LLNQVTVFDVGFNNLVGPL 271 (405)
Q Consensus 193 N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~ 271 (405)
|.+++..+..+ .+|+.|++++|.+++..+..+..+. +|++|++++|.+.+..|..+. .+++|+.|+|++|.|++.
T Consensus 109 N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 109 NNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 55554333222 3455555555555555455555554 566666666666655555544 456666666666666533
Q ss_pred ccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC---CCCCCCcccCCCCCCC
Q 045950 272 PESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL---TCLNLKDKDDRQNCIP 336 (405)
Q Consensus 272 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~L~~L~l~~N~l~ 336 (405)
+ .+..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.|++.+. .+.+|+.|++++|.+.
T Consensus 185 ~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 2 22345666666666666663 33335556666666666666665443 2345566666666555
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.6e-26 Score=215.92 Aligned_cols=233 Identities=19% Similarity=0.199 Sum_probs=195.5
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|++++|++.+..+..|..+++|++|+|++|++++..+ |..+++|++|++++|++++. + ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEE
Confidence 3489999999999998888899999999999999999996554 99999999999999999843 3 348999999
Q ss_pred ccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHH-hhcccCcEEEccCCCCC
Q 045950 167 IRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLT-KMAGTLNEIILLNTGLT 244 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~-~l~~~L~~L~l~~n~l~ 244 (405)
+++|++.+..+..+ ..|++|++++|++++..+..+.. .+|++|++++|.+.+..+..+. .+. +|++|++++|.+.
T Consensus 106 l~~n~l~~~~~~~~--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEECCC--SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCC
T ss_pred CCCCccCCcCcccc--CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC-cCCEEECCCCcCc
Confidence 99999985443321 23999999999999776666654 6799999999999987777775 455 9999999999998
Q ss_pred CCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCC-CCCC---
Q 045950 245 GCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFC-SEPL--- 320 (405)
Q Consensus 245 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~~--- 320 (405)
+. .....+++|++|++++|++++ +|..+..+++|++|+|++|+|+ .+|..+..+++|+.|++++|.+. +.++
T Consensus 183 ~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 DV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cc--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 66 233458999999999999995 5556999999999999999999 67888999999999999999998 3332
Q ss_pred -CCCCCCcccCCCC
Q 045950 321 -TCLNLKDKDDRQN 333 (405)
Q Consensus 321 -~~~~L~~L~l~~N 333 (405)
.+.+|+.++++++
T Consensus 259 ~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 259 SKNQRVQTVAKQTV 272 (317)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred hccccceEEECCCc
Confidence 4566777887743
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=8.8e-25 Score=216.58 Aligned_cols=188 Identities=19% Similarity=0.196 Sum_probs=139.3
Q ss_pred CCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcE
Q 045950 85 PHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKF 164 (405)
Q Consensus 85 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 164 (405)
....+++.|++++|++++. + ++.+++|++|++++|++++. + ++++++|++|++++|++++ ++ +..+++|++
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~ 131 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY 131 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence 3556889999999998874 3 88899999999999999864 3 8889999999999999985 44 788899999
Q ss_pred EeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCC
Q 045950 165 LDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGL 243 (405)
Q Consensus 165 L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l 243 (405)
|++++|++++ ++ +..+. |++|++++|...+.+ ......+|+.|++++|++++ ++ +..+. +|++|++++|++
T Consensus 132 L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~--l~~l~-~L~~L~l~~N~l 203 (457)
T 3bz5_A 132 LNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LD--VSQNK-LLNRLNCDTNNI 203 (457)
T ss_dssp EECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CC--CTTCT-TCCEEECCSSCC
T ss_pred EECCCCccce-ec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-ec--cccCC-CCCEEECcCCcC
Confidence 9999999885 43 45555 888888888555444 22233567788888888776 33 55555 777777777777
Q ss_pred CCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccC
Q 045950 244 TGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAI 295 (405)
Q Consensus 244 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 295 (405)
++. .++.+++|+.|++++|++++ +| +..+++|+.|++++|++++..
T Consensus 204 ~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 204 TKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred Cee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 754 36677777777777777775 44 667777777777777777543
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.9e-24 Score=212.63 Aligned_cols=55 Identities=18% Similarity=0.133 Sum_probs=33.3
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccccccCCCCCC
Q 045950 303 PKLENFTYSYNFFCSEPLTCLNLKDKDDRQNCIPNRPLQRSAMECKSFYAHPVDC 357 (405)
Q Consensus 303 ~~L~~L~Ls~N~l~~~~~~~~~L~~L~l~~N~l~~~p~~~~~~~~~~~~~np~~C 357 (405)
++|++|++++|++++.+..+.+|+.|++++|.++++|.....++...+.+|.+.+
T Consensus 317 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 317 PSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred CcCCEEECCCCccccccccCCcCCEEECCCCccccccchhhhccEEECCCCCCCc
Confidence 3566666666666665545566666666666666666544445555555665544
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8e-26 Score=225.91 Aligned_cols=231 Identities=19% Similarity=0.189 Sum_probs=194.9
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..+ |..+++|++|+|++|.|++. + ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 3489999999999999888999999999999999999997665 99999999999999999843 3 238999999
Q ss_pred ccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHH-hhcccCcEEEccCCCCC
Q 045950 167 IRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLT-KMAGTLNEIILLNTGLT 244 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~-~l~~~L~~L~l~~n~l~ 244 (405)
+++|.+.+..+..+ ..|++|++++|.+++..+..++. .+|+.|++++|.+++..|..+. .+. +|++|++++|.+.
T Consensus 106 L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCC
T ss_pred CcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCccc
Confidence 99999985544322 23999999999999887777765 6799999999999998888886 566 9999999999998
Q ss_pred CCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCC-CCCC---
Q 045950 245 GCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFC-SEPL--- 320 (405)
Q Consensus 245 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~~--- 320 (405)
+.. .+..+++|+.|+|++|.+++. |..+..+++|+.|+|++|.|+ .+|..+..+++|+.|++++|.+. +.++
T Consensus 183 ~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 763 344699999999999999964 455889999999999999999 47888999999999999999998 3222
Q ss_pred -CCCCCCcccCC
Q 045950 321 -TCLNLKDKDDR 331 (405)
Q Consensus 321 -~~~~L~~L~l~ 331 (405)
.+..|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 34455555553
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.2e-24 Score=201.05 Aligned_cols=201 Identities=20% Similarity=0.240 Sum_probs=147.5
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.+++++++++ .+|..+. ++++.|+|++|++++..+..|..+++|++|++++|.|++. +.. ..+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEE
Confidence 346777788887777 4454443 5777888888888776677777888888888888887743 322 6677788888
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTG 245 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 245 (405)
+++|++. .+|..+..+. |++|++++|++++. .+..+..+. +|++|++++|++.+
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l-----------------------~~~~~~~l~-~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-----------------------PLGALRGLG-ELQELYLKGNELKT 138 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCC-----------------------CSSTTTTCT-TCCEEECTTSCCCC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCccc-----------------------CHHHHcCCC-CCCEEECCCCCCCc
Confidence 8877776 6666555554 66666666666532 233444555 78888888888887
Q ss_pred CCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCC
Q 045950 246 CFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 246 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 318 (405)
..+..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+....+|+.|+|++|.+...
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 77777888888899999999888555556778888999999999888 6788888888888899888887653
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.5e-24 Score=200.57 Aligned_cols=186 Identities=16% Similarity=0.143 Sum_probs=155.7
Q ss_pred CCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcE
Q 045950 85 PHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKF 164 (405)
Q Consensus 85 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 164 (405)
....+++.|++++|++.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++.+..+..+..+++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 35678999999999999888889999999999999999999888888999999999999999999776668999999999
Q ss_pred EeccccccCC-CCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCc----EEEc
Q 045950 165 LDIRFNQFEG-DIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLN----EIIL 238 (405)
Q Consensus 165 L~Ls~N~i~~-~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~----~L~l 238 (405)
|++++|++.+ .+|..+..+. |++|++++|++++. .+..+..+. +|+ +|++
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-----------------------~~~~~~~l~-~L~~l~l~L~l 184 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----------------------YCTDLRVLH-QMPLLNLSLDL 184 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-----------------------CGGGGHHHH-TCTTCCEEEEC
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcC-----------------------CHHHhhhhh-hccccceeeec
Confidence 9999999985 3678888776 88888888877632 233444444 555 8999
Q ss_pred cCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccC
Q 045950 239 LNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAI 295 (405)
Q Consensus 239 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 295 (405)
++|.+.+..+..+.. .+|+.|++++|++++..+..+..+++|++|++++|.+.+..
T Consensus 185 s~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 185 SLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 999998666655544 48999999999999766667789999999999999998643
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=1.2e-24 Score=198.57 Aligned_cols=193 Identities=20% Similarity=0.212 Sum_probs=142.8
Q ss_pred CCCCccceecCCCCCCCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcC
Q 045950 69 DVCNYTGVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQF 148 (405)
Q Consensus 69 ~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 148 (405)
++|.|.|..|.. ..+.++++++++. .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++
T Consensus 3 ~Cp~~~gC~C~~--------~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 3 TCETVTGCTCNE--------GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp -CHHHHSSEEEG--------GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCceEcCC--------CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 467899999953 5667899999998 5666554 6899999999999988888899999999999999999
Q ss_pred CccCchhhhCCCCCcEEeccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHh
Q 045950 149 SGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTK 228 (405)
Q Consensus 149 ~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 228 (405)
++..+..|..+++|++|+|++|++++..+..+..+
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------------------------------------------- 106 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL--------------------------------------------- 106 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---------------------------------------------
T ss_pred CccCHhHhccCCcCCEEECCCCcccccChhHhccc---------------------------------------------
Confidence 98777788889999999999998873332222222
Q ss_pred hcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEE
Q 045950 229 MAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENF 308 (405)
Q Consensus 229 l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 308 (405)
. +|++|++++|++.+..+..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..+++|+.|
T Consensus 107 -~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 107 -T-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp -T-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -C-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 2 55566666666655555556667777777777777775555567777777777777777776555567777777777
Q ss_pred EccCCcCCCCC
Q 045950 309 TYSYNFFCSEP 319 (405)
Q Consensus 309 ~Ls~N~l~~~~ 319 (405)
++++|.+++..
T Consensus 185 ~l~~N~~~c~~ 195 (251)
T 3m19_A 185 TLFGNQFDCSR 195 (251)
T ss_dssp ECCSCCBCTTS
T ss_pred EeeCCceeCCc
Confidence 77777776653
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.4e-24 Score=219.08 Aligned_cols=235 Identities=25% Similarity=0.310 Sum_probs=131.8
Q ss_pred EEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccc
Q 045950 90 VAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRF 169 (405)
Q Consensus 90 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 169 (405)
++.|++++|+++ .+|..+. ++|+.|++++|.|+ .+|. .+++|++|+|++|+|+ .+|. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcC
Confidence 445555555554 3343333 45555555555554 2332 3344555555555554 2332 344455555555
Q ss_pred cccCC-------------------CCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhc
Q 045950 170 NQFEG-------------------DIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMA 230 (405)
Q Consensus 170 N~i~~-------------------~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 230 (405)
|++++ .+|..+ ..|++|++++|++++ ++.. ..+|+.|++++|.+++ +| ..+.
T Consensus 111 N~l~~l~~~l~~L~~L~L~~N~l~~lp~~l--~~L~~L~Ls~N~l~~-l~~~--~~~L~~L~L~~N~l~~-l~---~~~~ 181 (622)
T 3g06_A 111 NPLTHLPALPSGLCKLWIFGNQLTSLPVLP--PGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LP---MLPS 181 (622)
T ss_dssp CCCCCCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSC-CC---CCCT
T ss_pred CcCCCCCCCCCCcCEEECCCCCCCcCCCCC--CCCCEEECcCCcCCC-cCCc--cCCCCEEECCCCCCCC-Cc---ccCC
Confidence 54441 233321 125555555555542 2221 1234555555555543 22 1122
Q ss_pred ccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEc
Q 045950 231 GTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTY 310 (405)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 310 (405)
+|+.|++++|++.+ +|. .+++|+.|++++|.++ .+|.. +++|+.|+|++|.|++ +| ..+++|+.|++
T Consensus 182 -~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L 248 (622)
T 3g06_A 182 -GLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMV 248 (622)
T ss_dssp -TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred -CCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence 66667777776664 232 2356667777777666 44432 3678888888888884 55 35678888888
Q ss_pred cCCcCCCCCCCCCCCCcccCCCCCCCCCCCCC---CccccccccCCCCCC
Q 045950 311 SYNFFCSEPLTCLNLKDKDDRQNCIPNRPLQR---SAMECKSFYAHPVDC 357 (405)
Q Consensus 311 s~N~l~~~~~~~~~L~~L~l~~N~l~~~p~~~---~~~~~~~~~~np~~C 357 (405)
++|+|+.++..+.+|+.|++++|.|+.+|..+ ..++...+.+|++..
T Consensus 249 s~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 249 SGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCCCCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 88888877777778888888888888887543 344456677777653
No 71
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=9.9e-26 Score=216.89 Aligned_cols=246 Identities=16% Similarity=0.140 Sum_probs=173.8
Q ss_pred EECCCCCCcccCCccccCCCCCcEEeccCCCCCCccc----hhccCCC-CCcEEECCCCcCCccCchhhhCC-----CCC
Q 045950 93 IDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIP----DSFRNMR-LLFELDVSTNQFSGCFPSVVLCL-----PSL 162 (405)
Q Consensus 93 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~L 162 (405)
.+++.|++.+.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|++++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677888888777777777778888888888886655 6677777 78888888888887666666654 788
Q ss_pred cEEeccccccCCCCChhhhcc-----c-cceeecCCCCCCCCCCCCcC------CCCcchhhcccCCCCcCCchHH----
Q 045950 163 KFLDIRFNQFEGDIPSAVFDL-----K-LDALFINNNKFSSSLPKNIG------NSPVSVLVLANNNLNSCIPSSL---- 226 (405)
Q Consensus 163 ~~L~Ls~N~i~~~~p~~~~~~-----~-L~~L~L~~N~l~~~~~~~~~------~~~L~~L~L~~n~l~~~~p~~l---- 226 (405)
++|+|++|++++..+..+... . |++|++++|++++..+..+. ..+|++|++++|.+.+.....+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 888888888876666544432 4 88888888888765544332 2468888888888876554444
Q ss_pred HhhcccCcEEEccCCCCCCCCCccCC----CC-CCccEEEccCCCCCCC----CccccCC-CCCCCEEEeecCcCcccCc
Q 045950 227 TKMAGTLNEIILLNTGLTGCFPQDIG----LL-NQVTVFDVGFNNLVGP----LPESMGN-MKSLEQLNVAHNKLSGAIP 296 (405)
Q Consensus 227 ~~l~~~L~~L~l~~n~l~~~~p~~~~----~l-~~L~~L~L~~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~p 296 (405)
.....+|++|++++|++.+..+..+. .. ++|++|+|++|.+++. ++..+.. .++|++|+|++|.|++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 33323788888888888766554333 34 5888888888888753 3444544 3588888888888876544
Q ss_pred ----hhhcCCCCCCEEEccCCcCCCCC-----------CCCCCCCcccCCCCCCCCC
Q 045950 297 ----ESICRLPKLENFTYSYNFFCSEP-----------LTCLNLKDKDDRQNCIPNR 338 (405)
Q Consensus 297 ----~~l~~l~~L~~L~Ls~N~l~~~~-----------~~~~~L~~L~l~~N~l~~~ 338 (405)
..+..+++|++|++++|.+.+.. +.+.+|+.||+++|.+...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 23456788888888888854432 2455678888888887654
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.3e-24 Score=200.71 Aligned_cols=216 Identities=16% Similarity=0.183 Sum_probs=155.9
Q ss_pred EEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccc
Q 045950 90 VAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRF 169 (405)
Q Consensus 90 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 169 (405)
+..+++..+.+.+. ..+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++ + ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCC
Confidence 33445555555443 234566777777777777763 33 36777777777777777774 2 3567777777777777
Q ss_pred cccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCC
Q 045950 170 NQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFP 248 (405)
Q Consensus 170 N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p 248 (405)
|++++..+..+..+. |++|++++|++++. .+..+..+. +|++|++++|++.+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------------~~~~~~~l~-~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSL-----------------------PDGVFDKLT-NLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCC-----------------------CTTTTTTCT-TCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCcc-----------------------CHHHhccCC-CCCEEECCCCccCccCH
Confidence 777744444455555 66666666666533 333344555 88888888888887777
Q ss_pred ccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCCCCCCCcc
Q 045950 249 QDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLTCLNLKDK 328 (405)
Q Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~L~~L 328 (405)
..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+. |.+|+.+
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---~~~l~~l 227 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---CPGIRYL 227 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC---TTTTHHH
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc---CcHHHHH
Confidence 7788888999999999999877777778889999999999999877777788889999999999988765 4568888
Q ss_pred cCCCCCCCCC
Q 045950 329 DDRQNCIPNR 338 (405)
Q Consensus 329 ~l~~N~l~~~ 338 (405)
+++.|.+++.
T Consensus 228 ~~~~n~~~g~ 237 (272)
T 3rfs_A 228 SEWINKHSGV 237 (272)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHHhCCCc
Confidence 8888888764
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5e-23 Score=189.82 Aligned_cols=198 Identities=20% Similarity=0.287 Sum_probs=163.6
Q ss_pred CCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChh-hhccc-cceeec
Q 045950 113 DLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSA-VFDLK-LDALFI 190 (405)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~-~~~~~-L~~L~L 190 (405)
.++.+++++++++ .+|..+. .+|++|++++|++++..+..|.++++|++|++++|+++ .++.. +..+. |++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 5788999999999 5676554 67999999999999766678999999999999999998 45443 44455 888888
Q ss_pred CCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCC
Q 045950 191 NNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGP 270 (405)
Q Consensus 191 ~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 270 (405)
++|++++.. +..+..+. +|++|++++|++.+..+..|..+++|++|+|++|++++.
T Consensus 93 ~~n~l~~~~-----------------------~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 93 TDNKLQALP-----------------------IGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp CSSCCCCCC-----------------------TTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCcCC-----------------------HhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 877776322 22334455 899999999999988888899999999999999999976
Q ss_pred CccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCCCCC
Q 045950 271 LPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPNR 338 (405)
Q Consensus 271 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~ 338 (405)
.+..|..+++|++|++++|+|++..+..|..+++|++|++++|++++.++ .+.+|+.|++++|.+...
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 66678999999999999999997666778899999999999999998776 357899999999987654
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=9.8e-24 Score=194.82 Aligned_cols=200 Identities=19% Similarity=0.150 Sum_probs=156.4
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|++++|.+... +.+..+++|++|++++|.+++ + ..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 45799999999998743 358899999999999999996 3 4799999999999999999977777889999999999
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTG 245 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 245 (405)
+++|++.+..+..+..+. |++|++++|++++..+.. +..+. +|++|++++|++.+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----------------------~~~l~-~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV-----------------------FDKLT-NLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----------------------TTTCT-TCCEEECCSSCCCC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHH-----------------------hccCc-cCCEEECCCCCcCc
Confidence 999999966666667766 999999999887543332 23333 67777777777776
Q ss_pred CCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCC
Q 045950 246 CFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLT 321 (405)
Q Consensus 246 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 321 (405)
..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+.+. +++|+.++++.|.++|.+|.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 6666677777777778877777766666677777788888887777643 44677777777777776664
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.5e-23 Score=192.93 Aligned_cols=178 Identities=21% Similarity=0.214 Sum_probs=152.3
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|++++|++.+..+..|..+++|++|+|++|.|++. +. ...+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 46899999999999988889999999999999999999954 43 378999999999999999 7888899999999999
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTG 245 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 245 (405)
+++|++++..+..+..+. |++|++++|++++..+. .+..+. +|+.|++++|++.+
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------------------~~~~l~-~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-----------------------LLTPTP-KLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-----------------------TTTTCT-TCCEEECTTSCCSC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh-----------------------hccccc-CCCEEECCCCcCCc
Confidence 999999965556777776 99999999888743332 233344 88899999999887
Q ss_pred CCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCc
Q 045950 246 CFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLS 292 (405)
Q Consensus 246 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 292 (405)
..+..|..+++|+.|+|++|+++ .+|..+..+.+|+.|+|++|.+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 76777888999999999999999 78888888889999999999886
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.1e-23 Score=190.60 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=103.6
Q ss_pred CCcEEeccCCCCCCccchhccCCCCCcEEECCCCc-CCccCchhhhCCCCCcEEeccc-cccCCCCChhhhccc-cceee
Q 045950 113 DLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQ-FSGCFPSVVLCLPSLKFLDIRF-NQFEGDIPSAVFDLK-LDALF 189 (405)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~i~~~~p~~~~~~~-L~~L~ 189 (405)
+|++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..+..+. |++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555554444455555555555555554 5544444555555555555555 555532223333433 55555
Q ss_pred cCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCc---EEEccCC-CCCCCCCccCCCCCCcc-EEEccC
Q 045950 190 INNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLN---EIILLNT-GLTGCFPQDIGLLNQVT-VFDVGF 264 (405)
Q Consensus 190 L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~L~~ 264 (405)
+++|++++ +|. + ..+. +|+ +|++++| ++.+..+..|..+++|+ .|++++
T Consensus 112 l~~n~l~~-lp~-~-----------------------~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLKM-FPD-L-----------------------TKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEECCCS-CCC-C-----------------------TTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCCcc-ccc-c-----------------------cccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 55555442 222 1 1111 333 5566665 55555455566666666 666666
Q ss_pred CCCCCCCccccCCCCCCCEEEeecCc-CcccCchhhcCC-CCCCEEEccCCcCCCCCCC-CCCCCcccCCCC
Q 045950 265 NNLVGPLPESMGNMKSLEQLNVAHNK-LSGAIPESICRL-PKLENFTYSYNFFCSEPLT-CLNLKDKDDRQN 333 (405)
Q Consensus 265 N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~~~-~~~L~~L~l~~N 333 (405)
|+++ .+|......++|++|++++|+ +++..+..|..+ ++|+.|++++|++++.++. +.+|+.|+++++
T Consensus 166 n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 6666 333332222566666666663 664444556666 6666666666666655543 456666666554
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=6.2e-24 Score=199.88 Aligned_cols=224 Identities=18% Similarity=0.189 Sum_probs=167.9
Q ss_pred CCcEEEEECCCCCCcccCCc---cccCCCCCcEEeccCCCCCCccchhc--cCCCCCcEEECCCCcCCccCc----hhhh
Q 045950 87 SLTVAGIDLNHANIAGTLPE---ELGLLEDLALFHLNSNRFCGTIPDSF--RNMRLLFELDVSTNQFSGCFP----SVVL 157 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~ 157 (405)
..+++.+.+.++.+....-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578888888877532111 12235679999999999998888888 899999999999999997555 3456
Q ss_pred CCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCC--CC-CC-c-CCCCcchhhcccCCCCcCCch---H-HH
Q 045950 158 CLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSS--LP-KN-I-GNSPVSVLVLANNNLNSCIPS---S-LT 227 (405)
Q Consensus 158 ~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~--~~-~~-~-~~~~L~~L~L~~n~l~~~~p~---~-l~ 227 (405)
.+++|++|+|++|++.+..+..+..+. |++|++++|++.+. ++ .. + ...+|++|++++|+++. ++. . +.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 789999999999999877777887777 99999999998642 21 11 1 23568999999998863 232 2 34
Q ss_pred hhcccCcEEEccCCCCCCCCCccCCCC---CCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCC
Q 045950 228 KMAGTLNEIILLNTGLTGCFPQDIGLL---NQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304 (405)
Q Consensus 228 ~l~~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 304 (405)
.+. +|++|++++|++.+..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++ +|. +..+++
T Consensus 222 ~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~ 295 (310)
T 4glp_A 222 AGV-QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPE 295 (310)
T ss_dssp HTC-CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCC
T ss_pred cCC-CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCC
Confidence 455 88888888888887777766665 58888888888888 6676664 688888888888874 333 566778
Q ss_pred CCEEEccCCcCCC
Q 045950 305 LENFTYSYNFFCS 317 (405)
Q Consensus 305 L~~L~Ls~N~l~~ 317 (405)
|+.|++++|+|+.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 8888888887764
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=4e-24 Score=201.18 Aligned_cols=221 Identities=16% Similarity=0.123 Sum_probs=174.6
Q ss_pred CCCcEEeccCCCCCCccch---hccCCCCCcEEECCCCcCCccCchhh--hCCCCCcEEeccccccCCCCC----hhhhc
Q 045950 112 EDLALFHLNSNRFCGTIPD---SFRNMRLLFELDVSTNQFSGCFPSVV--LCLPSLKFLDIRFNQFEGDIP----SAVFD 182 (405)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~i~~~~p----~~~~~ 182 (405)
..++.+.+.++.++...-. .+..+++|++|++++|++++..|..+ ..+++|++|+|++|++.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3578888888887632111 12345679999999999998888888 889999999999999987655 22334
Q ss_pred cc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcC--Cc--hHHHhhcccCcEEEccCCCCCCCCCc----cCC
Q 045950 183 LK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSC--IP--SSLTKMAGTLNEIILLNTGLTGCFPQ----DIG 252 (405)
Q Consensus 183 ~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~--~p--~~l~~l~~~L~~L~l~~n~l~~~~p~----~~~ 252 (405)
.. |++|++++|++.+..+..+.. .+|++|++++|++.+. ++ ..+..+. +|++|++++|+++.. +. .++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l-~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMETP-TGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCH-HHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCch-HHHHHHHHh
Confidence 54 999999999999877777755 6799999999998642 11 1224555 899999999999632 22 256
Q ss_pred CCCCccEEEccCCCCCCCCccccCCC---CCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCC--CCCCCCCc
Q 045950 253 LLNQVTVFDVGFNNLVGPLPESMGNM---KSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEP--LTCLNLKD 327 (405)
Q Consensus 253 ~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~L~~ 327 (405)
.+++|++|+|++|++.+..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++.+ ..+.+|+.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~ 298 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDN 298 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccE
Confidence 78999999999999998878777776 69999999999999 7787764 79999999999999853 25688999
Q ss_pred ccCCCCCCCC
Q 045950 328 KDDRQNCIPN 337 (405)
Q Consensus 328 L~l~~N~l~~ 337 (405)
|++++|+|++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999875
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.3e-25 Score=216.09 Aligned_cols=231 Identities=16% Similarity=0.193 Sum_probs=109.6
Q ss_pred CcEEEEECCCCCCcccC----CccccCCCCCcEEeccCCC---CCCccchhc-------cCCCCCcEEECCCCcCCc---
Q 045950 88 LTVAGIDLNHANIAGTL----PEELGLLEDLALFHLNSNR---FCGTIPDSF-------RNMRLLFELDVSTNQFSG--- 150 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~Ls~N~l~~--- 150 (405)
.+++.|+|++|++.+.. +..+..+++|++|+|++|. +++.+|..+ ..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 35666666666665442 2335566666666666643 333334333 456666666666666664
Q ss_pred -cCchhhhCCCCCcEEeccccccCCCCChhhhc----c---------c-cceeecCCCCCCC-CCC---CCc-CCCCcch
Q 045950 151 -CFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFD----L---------K-LDALFINNNKFSS-SLP---KNI-GNSPVSV 210 (405)
Q Consensus 151 -~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~----~---------~-L~~L~L~~N~l~~-~~~---~~~-~~~~L~~ 210 (405)
.++..+..+++|++|+|++|.+....+..+.. . + |++|++++|+++. .++ ..+ ...+|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 24555666666666666666664322222222 1 2 6666666665541 111 111 1124445
Q ss_pred hhcccCCCCcC-----CchHHHhhcccCcEEEccCCCCC----CCCCccCCCCCCccEEEccCCCCCCC----Ccccc--
Q 045950 211 LVLANNNLNSC-----IPSSLTKMAGTLNEIILLNTGLT----GCFPQDIGLLNQVTVFDVGFNNLVGP----LPESM-- 275 (405)
Q Consensus 211 L~L~~n~l~~~-----~p~~l~~l~~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~-- 275 (405)
|++++|.+... .+..+..+. +|++|++++|.+. +.++..+..+++|++|+|++|.+++. ++..+
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 55555544411 111333333 4555555555443 23344444444455555555544432 23333
Q ss_pred CCCCCCCEEEeecCcCcc----cCchhh-cCCCCCCEEEccCCcCCCCC
Q 045950 276 GNMKSLEQLNVAHNKLSG----AIPESI-CRLPKLENFTYSYNFFCSEP 319 (405)
Q Consensus 276 ~~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~ 319 (405)
+.+++|++|+|++|.|++ .+|..+ .++++|+.|++++|++++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 224445555555555443 244433 33444555555555544433
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.1e-24 Score=206.44 Aligned_cols=231 Identities=17% Similarity=0.173 Sum_probs=185.6
Q ss_pred CCcEEEEECCCCCCcccCC----ccccCCC-CCcEEeccCCCCCCccchhccCC-----CCCcEEECCCCcCCccCchhh
Q 045950 87 SLTVAGIDLNHANIAGTLP----EELGLLE-DLALFHLNSNRFCGTIPDSFRNM-----RLLFELDVSTNQFSGCFPSVV 156 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l 156 (405)
..+++.|+|++|.+.+..+ +.+..++ +|++|+|++|++++..+..|..+ ++|++|+|++|++++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3469999999999998776 7788898 99999999999998777777765 999999999999997766644
Q ss_pred ----hCC-CCCcEEeccccccCCCCChhhhc-----c-ccceeecCCCCCCCCCCCCc----CC--CCcchhhcccCCCC
Q 045950 157 ----LCL-PSLKFLDIRFNQFEGDIPSAVFD-----L-KLDALFINNNKFSSSLPKNI----GN--SPVSVLVLANNNLN 219 (405)
Q Consensus 157 ----~~l-~~L~~L~Ls~N~i~~~~p~~~~~-----~-~L~~L~L~~N~l~~~~~~~~----~~--~~L~~L~L~~n~l~ 219 (405)
..+ ++|++|+|++|++++..+..+.. . .|++|++++|.+++.....+ .. .+|++|++++|+++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 444 89999999999998666655543 2 49999999999986444333 22 37999999999999
Q ss_pred cCCchHHHhh-----cccCcEEEccCCCCCCC----CCccCCC-CCCccEEEccCCCCCCCCc----cccCCCCCCCEEE
Q 045950 220 SCIPSSLTKM-----AGTLNEIILLNTGLTGC----FPQDIGL-LNQVTVFDVGFNNLVGPLP----ESMGNMKSLEQLN 285 (405)
Q Consensus 220 ~~~p~~l~~l-----~~~L~~L~l~~n~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~ 285 (405)
+..+..+... . +|++|++++|.+.+. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|+
T Consensus 181 ~~~~~~l~~~l~~~~~-~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 181 SKNCAELAKFLASIPA-SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GSCHHHHHHHHHTSCT-TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred hhhHHHHHHHHHhCCC-CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 8877766654 4 899999999999864 3444444 4599999999999997654 3457789999999
Q ss_pred eecCcCccc-------CchhhcCCCCCCEEEccCCcCCCC
Q 045950 286 VAHNKLSGA-------IPESICRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 286 L~~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~ 318 (405)
|++|.+.+. ++..+..+++|+.||+++|++.+.
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 999995533 233566788899999999999876
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1e-22 Score=191.36 Aligned_cols=193 Identities=17% Similarity=0.311 Sum_probs=128.9
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+++.|+++++++.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|++++ ++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 356677777776663 33 466667777777777777643 33 6667777777777777663 32 4666677777777
Q ss_pred cccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCC
Q 045950 168 RFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGC 246 (405)
Q Consensus 168 s~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 246 (405)
++|+++ .++. +..+. |++|++++|.++ +. +. +..+. +|++|++++|++.+.
T Consensus 115 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-----------------------~~-~~-l~~l~-~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 115 TSTQIT-DVTP-LAGLSNLQVLYLDLNQIT-----------------------NI-SP-LAGLT-NLQYLSIGNAQVSDL 166 (308)
T ss_dssp TTSCCC-CCGG-GTTCTTCCEEECCSSCCC-----------------------CC-GG-GGGCT-TCCEEECCSSCCCCC
T ss_pred CCCCCC-Cchh-hcCCCCCCEEECCCCccC-----------------------cC-cc-ccCCC-CccEEEccCCcCCCC
Confidence 777766 3333 44444 666666665554 22 11 44555 788888888888754
Q ss_pred CCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC
Q 045950 247 FPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL 320 (405)
Q Consensus 247 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 320 (405)
.+ +..+++|+.|++++|++++. +. +..+++|++|++++|++++.. .+..+++|+.|++++|++++.+.
T Consensus 167 ~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 167 TP--LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred hh--hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 33 77888888888888888744 32 777888888888888888543 37778888888888888876543
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=5e-25 Score=209.34 Aligned_cols=257 Identities=12% Similarity=0.094 Sum_probs=185.7
Q ss_pred CCccceecCCCCCCCCCCcEEEEECCCCCCcccCCccccCC--CCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcC
Q 045950 71 CNYTGVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLL--EDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQF 148 (405)
Q Consensus 71 C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 148 (405)
..|.++.|+. ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+
T Consensus 37 ~~W~~~~~~~-------~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 37 KRWYRLASDE-------SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp HHHHHHHTCS-------TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred HHHHHHhcCc-------hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence 3688877642 24677888887766 3455666 7888888888888866554 55788888888888888
Q ss_pred Ccc-CchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCC-CCCCC-CCCCcC-CCCcchhhcccC-CCCcC-
Q 045950 149 SGC-FPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNN-KFSSS-LPKNIG-NSPVSVLVLANN-NLNSC- 221 (405)
Q Consensus 149 ~~~-~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N-~l~~~-~~~~~~-~~~L~~L~L~~n-~l~~~- 221 (405)
++. ++..+..+++|++|++++|++.+..+..+...+ |++|++++| .+++. ++..+. ..+|++|++++| .+++.
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 755 677788888888888888888766777777666 888888888 56542 333232 356888888888 77754
Q ss_pred CchHHHhhcccCcEEEccCC--CCC-CCCCccCCCCCCccEEEccCCC-CCCCCccccCCCCCCCEEEeecCc-CcccCc
Q 045950 222 IPSSLTKMAGTLNEIILLNT--GLT-GCFPQDIGLLNQVTVFDVGFNN-LVGPLPESMGNMKSLEQLNVAHNK-LSGAIP 296 (405)
Q Consensus 222 ~p~~l~~l~~~L~~L~l~~n--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p 296 (405)
++..+..+..+|++|++++| .+. +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.....
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 34455555437999999988 454 3456667778899999999998 676777788888999999999984 433333
Q ss_pred hhhcCCCCCCEEEccCCcCCCCCC-CC-CCCCcccCCCCCCCCCC
Q 045950 297 ESICRLPKLENFTYSYNFFCSEPL-TC-LNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 297 ~~l~~l~~L~~L~Ls~N~l~~~~~-~~-~~L~~L~l~~N~l~~~p 339 (405)
..+.++++|+.|++++| ++.... .+ ..++.|++++|.+++..
T Consensus 266 ~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp GGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTT
T ss_pred HHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCcccc
Confidence 35778899999999988 443321 22 34788888999888764
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1e-24 Score=211.49 Aligned_cols=236 Identities=14% Similarity=0.205 Sum_probs=192.1
Q ss_pred cCCccccCCCCCcEEeccCCCCCCccc----hhccCCCCCcEEECCCC---cCCccCchhh-------hCCCCCcEEecc
Q 045950 103 TLPEELGLLEDLALFHLNSNRFCGTIP----DSFRNMRLLFELDVSTN---QFSGCFPSVV-------LCLPSLKFLDIR 168 (405)
Q Consensus 103 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N---~l~~~~p~~l-------~~l~~L~~L~Ls 168 (405)
.++..+..+++|+.|+|++|.+++..+ ..|..+++|++|+|++| ++++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 466778889999999999999997643 44778999999999996 4555566555 689999999999
Q ss_pred ccccCC----CCChhhhccc-cceeecCCCCCCCCCCCCcCC--------------CCcchhhcccCCCCc-CCc---hH
Q 045950 169 FNQFEG----DIPSAVFDLK-LDALFINNNKFSSSLPKNIGN--------------SPVSVLVLANNNLNS-CIP---SS 225 (405)
Q Consensus 169 ~N~i~~----~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~--------------~~L~~L~L~~n~l~~-~~p---~~ 225 (405)
+|++.+ .++..+...+ |++|+|++|.+++..+..+.. .+|++|++++|++.. .++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999986 3666777776 999999999987443333322 589999999999973 344 35
Q ss_pred HHhhcccCcEEEccCCCCCC-----CCCccCCCCCCccEEEccCCCCC----CCCccccCCCCCCCEEEeecCcCccc--
Q 045950 226 LTKMAGTLNEIILLNTGLTG-----CFPQDIGLLNQVTVFDVGFNNLV----GPLPESMGNMKSLEQLNVAHNKLSGA-- 294 (405)
Q Consensus 226 l~~l~~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~-- 294 (405)
+..+. +|++|++++|++.. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.|++.
T Consensus 183 l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 66676 99999999999973 34447889999999999999996 56788899999999999999999865
Q ss_pred --CchhhcC--CCCCCEEEccCCcCCCC----CC-----CCCCCCcccCCCCCCCCCC
Q 045950 295 --IPESICR--LPKLENFTYSYNFFCSE----PL-----TCLNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 295 --~p~~l~~--l~~L~~L~Ls~N~l~~~----~~-----~~~~L~~L~l~~N~l~~~p 339 (405)
++..+.. +++|+.|+|++|.+++. ++ .+.+|+.|++++|.+++..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5666644 89999999999999982 32 3689999999999999765
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.7e-21 Score=199.09 Aligned_cols=219 Identities=24% Similarity=0.310 Sum_probs=156.7
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhc-----------------cCCCCCcEEECCCCcCCc
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSF-----------------RNMRLLFELDVSTNQFSG 150 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----------------~~l~~L~~L~Ls~N~l~~ 150 (405)
.+++.|++++|+++ .+|. .+++|++|+|++|+|+ .+|..+ ..+.+|++|++++|+++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~- 134 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT- 134 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCCCCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCS-
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCCCCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCC-
Confidence 35555555555555 2332 3445555555555554 233200 03345555566666555
Q ss_pred cCchhhhCCCCCcEEeccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhc
Q 045950 151 CFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMA 230 (405)
Q Consensus 151 ~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 230 (405)
.+|.. +++|++|++++|+++ .+|..+ ..|+.|++++|.+++ ++. ...+|+.|++++|.+++ +|.. .
T Consensus 135 ~lp~~---l~~L~~L~Ls~N~l~-~l~~~~--~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~l~~-l~~~---~- 200 (622)
T 3g06_A 135 SLPVL---PPGLQELSVSDNQLA-SLPALP--SELCKLWAYNNQLTS-LPM--LPSGLQELSVSDNQLAS-LPTL---P- 200 (622)
T ss_dssp CCCCC---CTTCCEEECCSSCCS-CCCCCC--TTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCC---C-
T ss_pred cCCCC---CCCCCEEECcCCcCC-CcCCcc--CCCCEEECCCCCCCC-Ccc--cCCCCcEEECCCCCCCC-CCCc---c-
Confidence 34432 488999999999998 555422 239999999999995 552 23679999999999986 4432 2
Q ss_pred ccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEc
Q 045950 231 GTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTY 310 (405)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 310 (405)
.+|+.|++++|.+.. ++. .+++|+.|++++|+|++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|
T Consensus 201 ~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence 389999999999984 443 35889999999999995 56 45689999999999999 5676 5789999999
Q ss_pred cCCcCCCCCC---CCCCCCcccCCCCCCCCC
Q 045950 311 SYNFFCSEPL---TCLNLKDKDDRQNCIPNR 338 (405)
Q Consensus 311 s~N~l~~~~~---~~~~L~~L~l~~N~l~~~ 338 (405)
++|+|+.++. .+.+|+.|++++|.|++.
T Consensus 269 s~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 269 YRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 9999996654 467899999999999875
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.3e-22 Score=190.80 Aligned_cols=210 Identities=19% Similarity=0.292 Sum_probs=165.4
Q ss_pred EECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecccccc
Q 045950 93 IDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQF 172 (405)
Q Consensus 93 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i 172 (405)
+.+..+.+.+.+ .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++ ++. +..+++|++|++++|++
T Consensus 24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcC
Confidence 345555555433 24567888999999998884 44 58888899999999998884 444 88888999999999988
Q ss_pred CCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccC
Q 045950 173 EGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDI 251 (405)
Q Consensus 173 ~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~ 251 (405)
. .++ .+..+. |++|++++|++++ ++ .+..+. +|++|++++|++.+..+ +
T Consensus 98 ~-~~~-~~~~l~~L~~L~l~~n~l~~------------------------~~-~l~~l~-~L~~L~l~~n~l~~~~~--l 147 (308)
T 1h6u_A 98 K-NVS-AIAGLQSIKTLDLTSTQITD------------------------VT-PLAGLS-NLQVLYLDLNQITNISP--L 147 (308)
T ss_dssp S-CCG-GGTTCTTCCEEECTTSCCCC------------------------CG-GGTTCT-TCCEEECCSSCCCCCGG--G
T ss_pred C-Cch-hhcCCCCCCEEECCCCCCCC------------------------ch-hhcCCC-CCCEEECCCCccCcCcc--c
Confidence 7 344 455554 7777777776652 12 245555 99999999999986544 8
Q ss_pred CCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC--CCCCCCccc
Q 045950 252 GLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL--TCLNLKDKD 329 (405)
Q Consensus 252 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~ 329 (405)
..+++|+.|++++|++++ ++. +..+++|++|++++|++++ ++. +..+++|++|++++|++++..+ .+.+|+.|+
T Consensus 148 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVT 223 (308)
T ss_dssp GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEE
T ss_pred cCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccccccCCCCCCEEE
Confidence 899999999999999995 444 8999999999999999995 443 8889999999999999998775 578999999
Q ss_pred CCCCCCCCCCCCC
Q 045950 330 DRQNCIPNRPLQR 342 (405)
Q Consensus 330 l~~N~l~~~p~~~ 342 (405)
+++|.+++.|..+
T Consensus 224 l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 224 LTNQTITNQPVFY 236 (308)
T ss_dssp EEEEEEECCCEEC
T ss_pred ccCCeeecCCeee
Confidence 9999999877544
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=3.2e-25 Score=219.77 Aligned_cols=228 Identities=18% Similarity=0.171 Sum_probs=109.2
Q ss_pred cEEEEECCCCCCcc----cCCccccCCCCCcEEeccCCCCCCccchhcc-----CCCCCcEEECCCCcCCccC----chh
Q 045950 89 TVAGIDLNHANIAG----TLPEELGLLEDLALFHLNSNRFCGTIPDSFR-----NMRLLFELDVSTNQFSGCF----PSV 155 (405)
Q Consensus 89 ~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~----p~~ 155 (405)
++++|++++|++.. .++..+..+++|++|++++|.+++..+..+. ...+|++|++++|++++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46677777777663 3456666677777777777766543332222 2445666666666666432 344
Q ss_pred hhCCCCCcEEeccccccCCCCChhhhc-----c-ccceeecCCCCCCCC----CCCCc-CCCCcchhhcccCCCCcCCch
Q 045950 156 VLCLPSLKFLDIRFNQFEGDIPSAVFD-----L-KLDALFINNNKFSSS----LPKNI-GNSPVSVLVLANNNLNSCIPS 224 (405)
Q Consensus 156 l~~l~~L~~L~Ls~N~i~~~~p~~~~~-----~-~L~~L~L~~N~l~~~----~~~~~-~~~~L~~L~L~~n~l~~~~p~ 224 (405)
+..+++|++|++++|.+....+..+.. . .|++|++++|.+++. ++..+ ...+|++|++++|.+.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 455566666666666655322222221 2 266666666655532 12221 123455555555555432211
Q ss_pred HHH-----hhcccCcEEEccCCCCCCC----CCccCCCCCCccEEEccCCCCCCCCccccC-----CCCCCCEEEeecCc
Q 045950 225 SLT-----KMAGTLNEIILLNTGLTGC----FPQDIGLLNQVTVFDVGFNNLVGPLPESMG-----NMKSLEQLNVAHNK 290 (405)
Q Consensus 225 ~l~-----~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~ 290 (405)
.+. .+. +|++|++++|+++.. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.
T Consensus 246 ~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCC-CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 111 122 455555555555432 233344445555555555554422221111 11344444444444
Q ss_pred Cccc----CchhhcCCCCCCEEEccCCcCCC
Q 045950 291 LSGA----IPESICRLPKLENFTYSYNFFCS 317 (405)
Q Consensus 291 l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 317 (405)
+++. ++..+..+++|++|++++|++++
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 4432 23333344445555555554443
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=1.8e-22 Score=204.10 Aligned_cols=196 Identities=24% Similarity=0.391 Sum_probs=148.5
Q ss_pred Cccce-ecCCCCCCCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCc
Q 045950 72 NYTGV-YCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSG 150 (405)
Q Consensus 72 ~w~gv-~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 150 (405)
.|.|+ .|. ..+++.|++++|++++ +|..+ +++|++|+|++|+|+ .+| ..+++|++|++++|+|++
T Consensus 49 ~~~~l~~C~-------~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 49 AVSLLKECL-------INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST 114 (571)
T ss_dssp HHHHHHHHH-------HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC
T ss_pred hhhhccccc-------cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC
Confidence 68888 674 2479999999999997 67655 388999999999999 677 457899999999999996
Q ss_pred cCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhh
Q 045950 151 CFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKM 229 (405)
Q Consensus 151 ~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 229 (405)
+|. +.. +|++|+|++|+|++ +|. .+. |++|++++|.+++ +|. ...+|+.|++++|.+++ +|. +.
T Consensus 115 -ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~-- 179 (571)
T 3cvr_A 115 -LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP-- 179 (571)
T ss_dssp -CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--
T ss_pred -cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--
Confidence 776 655 99999999999985 776 344 9999999999985 554 34567778888888776 555 43
Q ss_pred cccCcEEEccCCCCCCCCCccCCCCCCc-------cEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCC
Q 045950 230 AGTLNEIILLNTGLTGCFPQDIGLLNQV-------TVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRL 302 (405)
Q Consensus 230 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 302 (405)
. +|++|++++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.|++.+|..+..+
T Consensus 180 ~-~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 180 E-SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp T-TCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred C-CCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3 7777888877777 4444 443 56 77777777777 567666667777777777777777777666543
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=1e-24 Score=216.11 Aligned_cols=252 Identities=16% Similarity=0.120 Sum_probs=195.0
Q ss_pred CCCcEEEEECCCCCCcccCCcccc-----CCCCCcEEeccCCCCCCc----cchhccCCCCCcEEECCCCcCCccCchhh
Q 045950 86 HSLTVAGIDLNHANIAGTLPEELG-----LLEDLALFHLNSNRFCGT----IPDSFRNMRLLFELDVSTNQFSGCFPSVV 156 (405)
Q Consensus 86 ~~~~l~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 156 (405)
...+++.|++++|.+.+..+..+. ...+|++|++++|++++. ++..+..+++|++|++++|.++...+..+
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 456899999999998765444332 356899999999999864 36667788999999999999986555444
Q ss_pred h-----CCCCCcEEeccccccCCC----CChhhhccc-cceeecCCCCCCCCCC-----CCc-CCCCcchhhcccCCCCc
Q 045950 157 L-----CLPSLKFLDIRFNQFEGD----IPSAVFDLK-LDALFINNNKFSSSLP-----KNI-GNSPVSVLVLANNNLNS 220 (405)
Q Consensus 157 ~-----~l~~L~~L~Ls~N~i~~~----~p~~~~~~~-L~~L~L~~N~l~~~~~-----~~~-~~~~L~~L~L~~n~l~~ 220 (405)
. .+++|++|++++|.++.. ++..+.... |++|++++|.+.+... ..+ ...+|++|++++|.+++
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 3 367999999999999853 456666666 9999999999875321 111 24679999999999986
Q ss_pred C----CchHHHhhcccCcEEEccCCCCCCCCCccCC-----CCCCccEEEccCCCCCCC----CccccCCCCCCCEEEee
Q 045950 221 C----IPSSLTKMAGTLNEIILLNTGLTGCFPQDIG-----LLNQVTVFDVGFNNLVGP----LPESMGNMKSLEQLNVA 287 (405)
Q Consensus 221 ~----~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~ 287 (405)
. ++..+..+. +|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 271 ~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 271 KGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHHCT-TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHhhCC-CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 4 466666677 999999999998654332222 236999999999999865 46667788999999999
Q ss_pred cCcCcccCchhhcC-----CCCCCEEEccCCcCCC----CCC----CCCCCCcccCCCCCCCCC
Q 045950 288 HNKLSGAIPESICR-----LPKLENFTYSYNFFCS----EPL----TCLNLKDKDDRQNCIPNR 338 (405)
Q Consensus 288 ~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~~----~~~~L~~L~l~~N~l~~~ 338 (405)
+|.+++..+..+.. .++|++|++++|++++ .++ .+.+|++|++++|.|++.
T Consensus 350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 99998765555542 6799999999999985 332 478999999999998864
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.5e-23 Score=195.24 Aligned_cols=230 Identities=14% Similarity=0.114 Sum_probs=186.2
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCc-cchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGT-IPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
.+++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5799999999999977665 66799999999999999866 788899999999999999999988889999999999999
Q ss_pred cccc-ccCCC-CChhhhccc-cceeecCCC-CCCCC-CCCCcCC-C-CcchhhcccC--CCC-cCCchHHHhhcccCcEE
Q 045950 167 IRFN-QFEGD-IPSAVFDLK-LDALFINNN-KFSSS-LPKNIGN-S-PVSVLVLANN--NLN-SCIPSSLTKMAGTLNEI 236 (405)
Q Consensus 167 Ls~N-~i~~~-~p~~~~~~~-L~~L~L~~N-~l~~~-~~~~~~~-~-~L~~L~L~~n--~l~-~~~p~~l~~l~~~L~~L 236 (405)
+++| .+++. ++..+..++ |++|++++| .+++. ++..+.. . +|++|++++| .++ +.++..+..+. +|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC-CCCEE
Confidence 9999 67642 566666777 999999999 88753 3333332 5 8999999999 455 34566777777 99999
Q ss_pred EccCCC-CCCCCCccCCCCCCccEEEccCCC-CCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCc
Q 045950 237 ILLNTG-LTGCFPQDIGLLNQVTVFDVGFNN-LVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNF 314 (405)
Q Consensus 237 ~l~~n~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 314 (405)
++++|. +++..+..+..+++|++|++++|. +.......+.++++|++|++++| +....-..+. .++..|++++|+
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 999999 777777889999999999999995 33222236788999999999999 6543333332 246667799999
Q ss_pred CCCCCCCC
Q 045950 315 FCSEPLTC 322 (405)
Q Consensus 315 l~~~~~~~ 322 (405)
+++..+..
T Consensus 305 l~~~~~~~ 312 (336)
T 2ast_B 305 FTTIARPT 312 (336)
T ss_dssp SCCTTCSS
T ss_pred CccccCCc
Confidence 99988754
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=7e-22 Score=189.08 Aligned_cols=236 Identities=17% Similarity=0.204 Sum_probs=165.1
Q ss_pred CCccceecCC-----CCCCCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccc-hhccCCCCCcE-EEC
Q 045950 71 CNYTGVYCAP-----APDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIP-DSFRNMRLLFE-LDV 143 (405)
Q Consensus 71 C~w~gv~c~~-----~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L 143 (405)
|.+..|.|.. +|.. ...++++|+|++|+|+...+.+|.++++|++|+|++|++.+.++ ..|.++++|++ +.+
T Consensus 9 C~~~~v~C~~~~Lt~iP~~-l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EETTEEEEESTTCCSCCTT-CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eeCCEEEecCCCCCccCcC-cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 6778888863 2221 24578899999999987666788999999999999999876555 46788888775 566
Q ss_pred CCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhcc-ccceeecCC-CCCCCCCCCCcCC--CCcchhhcccCCCC
Q 045950 144 STNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDL-KLDALFINN-NKFSSSLPKNIGN--SPVSVLVLANNNLN 219 (405)
Q Consensus 144 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~-~L~~L~L~~-N~l~~~~~~~~~~--~~L~~L~L~~n~l~ 219 (405)
+.|+++...|..|..+++|++|++++|++....+..+... .+..|++.+ +++....+..+.. ..++.|++++|+|+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 7788987778888899999999999999984433333333 377788755 5565433344433 34778888888887
Q ss_pred cCCchHHHhhcccCcEEEccC-CCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecC-cCcccCch
Q 045950 220 SCIPSSLTKMAGTLNEIILLN-TGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHN-KLSGAIPE 297 (405)
Q Consensus 220 ~~~p~~l~~l~~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~ 297 (405)
. ++...+... +|++|++++ |.+....+..|..+++|+.|||++|+|+ .+|.. .+.+|+.|.+.++ .++ .+|
T Consensus 168 ~-i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~-~lP- 240 (350)
T 4ay9_X 168 E-IHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLK-KLP- 240 (350)
T ss_dssp E-ECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCC-CCC-
T ss_pred C-CChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcC-cCC-
Confidence 5 444555555 788888875 5555444466788888888888888888 44432 2455666665444 344 666
Q ss_pred hhcCCCCCCEEEccCCc
Q 045950 298 SICRLPKLENFTYSYNF 314 (405)
Q Consensus 298 ~l~~l~~L~~L~Ls~N~ 314 (405)
.+.++++|+.++++++.
T Consensus 241 ~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 241 TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTTCCSCCEEECSCHH
T ss_pred CchhCcChhhCcCCCCc
Confidence 36778888888887654
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=7.1e-21 Score=173.42 Aligned_cols=176 Identities=18% Similarity=0.151 Sum_probs=139.5
Q ss_pred CCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhccc
Q 045950 137 LLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLAN 215 (405)
Q Consensus 137 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~ 215 (405)
..++++++++.++ .+|..+. ++|++|+|++|++.+..+..+..+. |++|++++|.+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 73 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT------------------ 73 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc------------------
Confidence 4567777777777 5565443 5677777777777755555555555 6666666666653
Q ss_pred CCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccC
Q 045950 216 NNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAI 295 (405)
Q Consensus 216 n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 295 (405)
..+..+..+. +|++|++++|++.+..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..
T Consensus 74 -----~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 74 -----LSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp -----CCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -----cCHhHhccCC-cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 3344455555 8999999999999888888999999999999999999777777899999999999999999766
Q ss_pred chhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCCCCCC
Q 045950 296 PESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 296 p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~p 339 (405)
+..|..+++|++|+|++|+|++.++ .+.+|+.|++++|.++..+
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 6689999999999999999998876 3578999999999998763
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.7e-21 Score=171.06 Aligned_cols=180 Identities=20% Similarity=0.200 Sum_probs=100.4
Q ss_pred CCCccceecCCCCC----CCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCC
Q 045950 70 VCNYTGVYCAPAPD----DPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVST 145 (405)
Q Consensus 70 ~C~w~gv~c~~~~~----~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 145 (405)
.|.|.++.|....- .....+++.|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 47899999864210 01223455555555555544444455555555555555555544444455555555555555
Q ss_pred CcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCch
Q 045950 146 NQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPS 224 (405)
Q Consensus 146 N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 224 (405)
|++++..+..+..+++|++|++++|++.+..+..+..+. |++|++++|+++ +..+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-----------------------~~~~~ 142 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-----------------------SVPDG 142 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-----------------------CCCTT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-----------------------eeCHH
Confidence 555544444455555555555555555533333333333 555555555544 33333
Q ss_pred HHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCC
Q 045950 225 SLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKS 280 (405)
Q Consensus 225 ~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 280 (405)
.+..+. +|++|++++|.+.+ .+++|++|+++.|+++|.+|..++.++.
T Consensus 143 ~~~~l~-~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFDRLT-SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTCT-TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccCC-CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 344454 77777777776653 3456777777777777777777766554
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=5.6e-21 Score=193.16 Aligned_cols=181 Identities=23% Similarity=0.332 Sum_probs=154.2
Q ss_pred CCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccccceeecCC
Q 045950 113 DLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINN 192 (405)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~ 192 (405)
+|+.|++++|.|++ +|..+ .++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.. .|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCC
Confidence 89999999999996 77655 378999999999999 677 467999999999999995 777 544 799999999
Q ss_pred CCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCc
Q 045950 193 NKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLP 272 (405)
Q Consensus 193 N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 272 (405)
|.+++ +|. ...+|+.|++++|.+++ +|. .+. +|++|++++|++++ +|. |. ++|+.|+|++|+|+ .+|
T Consensus 130 N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~-~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPT-SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCT-TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCC-CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 99996 565 45789999999999997 555 344 99999999999987 666 65 89999999999999 777
Q ss_pred cccCCCCCC-------CEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC
Q 045950 273 ESMGNMKSL-------EQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL 320 (405)
Q Consensus 273 ~~~~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 320 (405)
. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.++
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 7 654 77 99999999999 689888889999999999999998765
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=5.8e-21 Score=172.63 Aligned_cols=179 Identities=13% Similarity=0.166 Sum_probs=144.1
Q ss_pred CCCcEEECCCCcCCccCchhhhCCCCCcEEeccccc-cCCCCChhhhccc-cceeecCC-CCCCCCCCCCcCCCCcchhh
Q 045950 136 RLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQ-FEGDIPSAVFDLK-LDALFINN-NKFSSSLPKNIGNSPVSVLV 212 (405)
Q Consensus 136 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-i~~~~p~~~~~~~-L~~L~L~~-N~l~~~~~~~~~~~~L~~L~ 212 (405)
.+|++|++++|++++..+..|.++++|++|++++|+ ++...+..+..+. |++|++++ |++++.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-------------- 96 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-------------- 96 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE--------------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc--------------
Confidence 389999999999997777789999999999999997 8744444555555 77777776 666532
Q ss_pred cccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCcc---EEEccCC-CCCCCCccccCCCCCCC-EEEee
Q 045950 213 LANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVT---VFDVGFN-NLVGPLPESMGNMKSLE-QLNVA 287 (405)
Q Consensus 213 L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~L~ 287 (405)
.+..+..+. +|++|++++|++.+ +|. +..+++|+ +|++++| ++++..+..|.++++|+ +|+++
T Consensus 97 ---------~~~~f~~l~-~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 97 ---------DPDALKELP-LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp ---------CTTSEECCT-TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred ---------CHHHhCCCC-CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 223344455 89999999999986 555 88888888 9999999 99976667799999999 99999
Q ss_pred cCcCcccCchhhcCCCCCCEEEccCCc-CCCCCC----CC-CCCCcccCCCCCCCCCCCC
Q 045950 288 HNKLSGAIPESICRLPKLENFTYSYNF-FCSEPL----TC-LNLKDKDDRQNCIPNRPLQ 341 (405)
Q Consensus 288 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~----~~-~~L~~L~l~~N~l~~~p~~ 341 (405)
+|+++ .+|......++|+.|++++|+ +++.++ .+ .+|+.|++++|.|+++|..
T Consensus 165 ~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp SCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 99999 566554444899999999995 987765 35 7899999999999998765
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.8e-20 Score=179.22 Aligned_cols=234 Identities=15% Similarity=0.143 Sum_probs=177.8
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCc-hhhhCCCCCcE-Eeccc
Q 045950 92 GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFP-SVVLCLPSLKF-LDIRF 169 (405)
Q Consensus 92 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~Ls~ 169 (405)
.++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.++ ..|.++++|++ +.+++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 5678888888 667665 3689999999999996555679999999999999999876665 56788988775 66778
Q ss_pred cccCCCCChhhhccc-cceeecCCCCCCCCCCCCc-CCCCcchhhccc-CCCCcCCchHHHhhcccCcEEEccCCCCCCC
Q 045950 170 NQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNI-GNSPVSVLVLAN-NNLNSCIPSSLTKMAGTLNEIILLNTGLTGC 246 (405)
Q Consensus 170 N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~-~~~~L~~L~L~~-n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 246 (405)
|++....+..+..+. |++|++++|++....+..+ ...++..+++.+ +++....+..+..+...++.|++++|+|+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 999866677777777 9999999999986555444 335677888865 5676555555666655799999999999854
Q ss_pred CCccCCCCCCccEEEccC-CCCCCCCc-cccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCC-cCCCCCC--C
Q 045950 247 FPQDIGLLNQVTVFDVGF-NNLVGPLP-ESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYN-FFCSEPL--T 321 (405)
Q Consensus 247 ~p~~~~~l~~L~~L~L~~-N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~~--~ 321 (405)
.+. .....+|+.|++.+ |.++ .+| ..|.++++|++|+|++|+|+ .+|.. .+.+|+.|.+.++ .+...++ .
T Consensus 170 ~~~-~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 170 HNS-AFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp CTT-SSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCTTT
T ss_pred Chh-hccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCchh
Confidence 444 44567899999985 6666 555 56899999999999999999 56653 2566777776554 4555443 5
Q ss_pred CCCCCcccCCCC
Q 045950 322 CLNLKDKDDRQN 333 (405)
Q Consensus 322 ~~~L~~L~l~~N 333 (405)
+.+|+.+++.++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 678888888765
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.2e-19 Score=163.09 Aligned_cols=164 Identities=22% Similarity=0.242 Sum_probs=109.2
Q ss_pred CCCCCCCCCCccceecCCCCCCCCCCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEE
Q 045950 63 SNWYGPDVCNYTGVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELD 142 (405)
Q Consensus 63 ~~w~~~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 142 (405)
..|.+...|.|.++.|. ++++. .+|..+. ++|++|+|++|.|++..+..|..+++|++|+
T Consensus 11 ~~~~~~~~Cs~~~v~c~-----------------~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 70 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCR-----------------SKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELY 70 (229)
T ss_dssp CCCCTTCEEETTEEECT-----------------TSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCCCCEEeCCEeEcc-----------------CCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEE
Confidence 35567789999999985 33344 4454443 7888999999999887788888889999999
Q ss_pred CCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCC
Q 045950 143 VSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCI 222 (405)
Q Consensus 143 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 222 (405)
|++|+|+...+..|..+++|++|+|++|+|++..+..+..+.
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-------------------------------------- 112 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV-------------------------------------- 112 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------------------------------------
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch--------------------------------------
Confidence 999998855556678888888888888888733222222222
Q ss_pred chHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCccc
Q 045950 223 PSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGA 294 (405)
Q Consensus 223 p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 294 (405)
+|++|++++|++. .+|..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus 113 ---------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 113 ---------HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp ---------TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ---------hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 4444444444444 3344455555666666666666644444566666666666666666543
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=6.3e-20 Score=170.94 Aligned_cols=171 Identities=18% Similarity=0.288 Sum_probs=87.3
Q ss_pred CCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-ccee
Q 045950 110 LLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDAL 188 (405)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L 188 (405)
.+++|+.|++++|.++. ++ .+..+++|++|++++|++++. +. +..+++|++|++++|++. .++. +..+. |++|
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC-CChh-hccCCCCCEE
Confidence 44555555555555552 22 245555555555555555532 22 555555555555555554 2222 33333 5555
Q ss_pred ecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCC
Q 045950 189 FINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLV 268 (405)
Q Consensus 189 ~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 268 (405)
++++|++++. ..+..+. +|++|++++|++.+. ..+..+++|+.|++++|+++
T Consensus 118 ~L~~n~i~~~-------------------------~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 118 SLEHNGISDI-------------------------NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ECTTSCCCCC-------------------------GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCCC-------------------------hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 5554444421 1222333 555555555555543 34555566666666666665
Q ss_pred CCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCC
Q 045950 269 GPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 269 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 318 (405)
+..+ +..+++|++|++++|.|++ ++ .+..+++|+.|++++|+++..
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred cchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 4322 5566666666666666653 33 255566666666666665543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.2e-20 Score=163.32 Aligned_cols=180 Identities=18% Similarity=0.188 Sum_probs=143.5
Q ss_pred EEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecccc
Q 045950 91 AGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170 (405)
Q Consensus 91 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 170 (405)
+.++.+++++. .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46788888887 445433 468999999999999776677889999999999999999666666788999999999999
Q ss_pred ccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCc
Q 045950 171 QFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQ 249 (405)
Q Consensus 171 ~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~ 249 (405)
++++..+..+..+. |++|++++|++++.. +..+..+. +|++|++++|++.+..+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------------------~~~~~~l~-~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLP-----------------------DGVFDKLT-QLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------TTTTTTCT-TCCEEECCSSCCSCCCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccC-----------------------HhHhccCC-cCCEEECCCCccceeCHH
Confidence 99844444455555 778877777776322 22344455 999999999999988777
Q ss_pred cCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCC
Q 045950 250 DIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPK 304 (405)
Q Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 304 (405)
.+..+++|+.|++++|.+.+ .+++|++|+++.|+++|.+|..++.++.
T Consensus 143 ~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 89999999999999998774 4568999999999999999998887664
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=2.1e-19 Score=183.32 Aligned_cols=188 Identities=18% Similarity=0.302 Sum_probs=106.4
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccc
Q 045950 92 GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQ 171 (405)
Q Consensus 92 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 171 (405)
.+++..+.+.+..+ +..+.+|+.|++++|.+.. ++ .|..+++|++|+|++|+|++..+ +..+++|++|+|++|+
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 34455555544332 4556667777777777763 33 36667777777777777764333 6677777777777777
Q ss_pred cCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCcc
Q 045950 172 FEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQD 250 (405)
Q Consensus 172 i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~ 250 (405)
+. .++ .+..+. |++|+|++|++.+ ++ .+..+. +|+.|+|++|.+.+. ..
T Consensus 99 l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~------------------------~l~~l~-~L~~L~Ls~N~l~~l--~~ 148 (605)
T 1m9s_A 99 IK-DLS-SLKDLKKLKSLSLEHNGISD-IN------------------------GLVHLP-QLESLYLGNNKITDI--TV 148 (605)
T ss_dssp CC-CCT-TSTTCTTCCEEECTTSCCCC-CG------------------------GGGGCT-TCSEEECCSSCCCCC--GG
T ss_pred CC-CCh-hhccCCCCCEEEecCCCCCC-Cc------------------------cccCCC-ccCEEECCCCccCCc--hh
Confidence 66 333 344444 6666666666552 11 233333 555555555555543 34
Q ss_pred CCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCC
Q 045950 251 IGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEP 319 (405)
Q Consensus 251 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 319 (405)
+..+++|+.|+|++|+|.+..| +..+++|+.|+|++|+|++ ++ .+..+++|+.|+|++|++++.+
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 5555566666666666654433 5555666666666666653 22 3555566666666666655543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=5.8e-19 Score=164.38 Aligned_cols=169 Identities=20% Similarity=0.351 Sum_probs=140.3
Q ss_pred CCcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
..+++.|++++|.+... +.+..+++|++|++++|++++..+ +.++++|++|++++|++++ ++ .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 34799999999999855 358999999999999999996544 9999999999999999985 44 489999999999
Q ss_pred ccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCC
Q 045950 167 IRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTG 245 (405)
Q Consensus 167 Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~ 245 (405)
+++|++.+ + ..+..+. |++|++++|++++. ..+..+. +|++|++++|.+.+
T Consensus 119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-------------------------~~l~~l~-~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-------------------------TVLSRLT-KLDTLSLEDNQISD 170 (291)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-------------------------GGGGGCT-TCSEEECCSSCCCC
T ss_pred CCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-------------------------hhhccCC-CCCEEEccCCcccc
Confidence 99999984 4 3455665 99999888887732 2344555 89999999999886
Q ss_pred CCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcc
Q 045950 246 CFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSG 293 (405)
Q Consensus 246 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 293 (405)
..+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred chh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 654 8889999999999999984 44 48899999999999999884
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4.7e-19 Score=170.14 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=115.6
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhcc-CCCCCcEEECCCCcCCccCchhhhCCCCCcEEecccc
Q 045950 92 GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFR-NMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170 (405)
Q Consensus 92 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 170 (405)
.++++++++. .+|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5677888887 4565543 4688999999999977777777 8999999999999999777778888999999999998
Q ss_pred ccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCcc
Q 045950 171 QFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQD 250 (405)
Q Consensus 171 ~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~ 250 (405)
+|+...+..+..+. +|++|++++|+|.+..+..
T Consensus 99 ~l~~~~~~~~~~l~-----------------------------------------------~L~~L~L~~N~i~~~~~~~ 131 (361)
T 2xot_A 99 HLHTLDEFLFSDLQ-----------------------------------------------ALEVLLLYNNHIVVVDRNA 131 (361)
T ss_dssp CCCEECTTTTTTCT-----------------------------------------------TCCEEECCSSCCCEECTTT
T ss_pred cCCcCCHHHhCCCc-----------------------------------------------CCCEEECCCCcccEECHHH
Confidence 88733222232222 4555555555555444555
Q ss_pred CCCCCCccEEEccCCCCCCCCcccc---CCCCCCCEEEeecCcCcccCchhhcCCCC--CCEEEccCCcCCC
Q 045950 251 IGLLNQVTVFDVGFNNLVGPLPESM---GNMKSLEQLNVAHNKLSGAIPESICRLPK--LENFTYSYNFFCS 317 (405)
Q Consensus 251 ~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~ 317 (405)
|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++..+..+..++. ++.|+|++|.+..
T Consensus 132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 5666666666666666663322233 44666666666666666444445555554 3566666666653
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=6.2e-21 Score=199.08 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHhccCCCCCCCCCCC--CCCCCCccceecCCCCCCCCCCcEEEEECCCCCCcccCCccccCCCCCcE-
Q 045950 40 LSKAYTALQAWKYAITSDPNGFTSNWY--GPDVCNYTGVYCAPAPDDPHSLTVAGIDLNHANIAGTLPEELGLLEDLAL- 116 (405)
Q Consensus 40 ~~~~~~al~~~~~~~~~~~~~~~~~w~--~~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~- 116 (405)
.+.++.++.++.....+..+.....|. ....+.|.+..+. ..+++.|+|.+|.+... +..+.....|..
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-------~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~ 201 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS-------TPLTPKIELFANGKDEA-NQALLQHKKLSQY 201 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec-------CCccceEEeeCCCCCcc-hhhHhhcCccCcc
Confidence 345567788887776555555555674 2345678777664 23556666655555432 222211111111
Q ss_pred ----EeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecC
Q 045950 117 ----FHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFIN 191 (405)
Q Consensus 117 ----L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~ 191 (405)
+++..|++. ..+..|..+..|++|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+..+. |++|+|+
T Consensus 202 ~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 202 SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence 112222222 23444555555555555555555 44444445555555555555555 5555554444 5555555
Q ss_pred CCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCc
Q 045950 192 NNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQ 249 (405)
Q Consensus 192 ~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~ 249 (405)
+|+|+ .+|..++. .+|++|+|++|.|+ .+|..+..+. +|++|+|++|.+.+.+|.
T Consensus 279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 279 HNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSHHHH
T ss_pred CCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCC-CccEEeCCCCccCCCChH
Confidence 55555 33433332 23444444444443 2333344433 444444444444443333
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=3.3e-21 Score=195.51 Aligned_cols=190 Identities=20% Similarity=0.264 Sum_probs=102.8
Q ss_pred cCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCc-------------CCccCchhhhCCCCCcEEe-ccccccCC
Q 045950 109 GLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQ-------------FSGCFPSVVLCLPSLKFLD-IRFNQFEG 174 (405)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-Ls~N~i~~ 174 (405)
...++|+.|+|++|+++ .+|..++++++|++|++++|. +.+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34555666666666665 456666666666666665543 2333444444444555554 3433321
Q ss_pred CCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCC
Q 045950 175 DIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLL 254 (405)
Q Consensus 175 ~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l 254 (405)
. |+.+.+++|.++... ...++.|++++|.+++ +|. +..+. +|+.|++++|.+. .+|..++.+
T Consensus 424 ~---------L~~l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 D---------LRSKFLLENSVLKME-----YADVRVLHLAHKDLTV-LCH-LEQLL-LVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp H---------HHHHHHHHHHHHHHH-----HTTCSEEECTTSCCSS-CCC-GGGGT-TCCEEECCSSCCC-CCCGGGGGC
T ss_pred h---------hhhhhhhcccccccC-----ccCceEEEecCCCCCC-CcC-ccccc-cCcEeecCccccc-ccchhhhcC
Confidence 1 222222223222110 0124455555555554 343 55555 6666666666666 556666666
Q ss_pred CCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccC-chhhcCCCCCCEEEccCCcCCCCCC
Q 045950 255 NQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAI-PESICRLPKLENFTYSYNFFCSEPL 320 (405)
Q Consensus 255 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~ 320 (405)
++|+.|+|++|+|++ +| .++.+++|++|+|++|+|++.. |..+..+++|+.|+|++|+|++.++
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 666666666666663 45 5666666666666666666544 6666666666666666666666554
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2e-19 Score=183.52 Aligned_cols=193 Identities=20% Similarity=0.294 Sum_probs=157.4
Q ss_pred CCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceee
Q 045950 111 LEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALF 189 (405)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~ 189 (405)
+..+..+.+..+.+.+..+ +..+.+|++|++++|.+. .++ .+..+++|++|+|++|++.+ ++. +..+. |++|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEE
Confidence 3455667788888875443 567889999999999998 444 58899999999999999984 444 66666 88888
Q ss_pred cCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCC
Q 045950 190 INNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVG 269 (405)
Q Consensus 190 L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 269 (405)
|++|.+.+. ..+..+. +|++|+|++|.+.+. ..+..+++|+.|+|++|++++
T Consensus 94 Ls~N~l~~l-------------------------~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 145 (605)
T 1m9s_A 94 LDENKIKDL-------------------------SSLKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD 145 (605)
T ss_dssp CCSSCCCCC-------------------------TTSTTCT-TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CcCCCCCCC-------------------------hhhccCC-CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC
Confidence 888887631 1234455 899999999999864 468899999999999999996
Q ss_pred CCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC--CCCCCCcccCCCCCCCCCCCC
Q 045950 270 PLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL--TCLNLKDKDDRQNCIPNRPLQ 341 (405)
Q Consensus 270 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~L~~L~l~~N~l~~~p~~ 341 (405)
. ..+..+++|+.|+|++|+|.+..| +..+++|+.|+|++|+|++... .+.+|+.|+|++|.+++.|..
T Consensus 146 l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 146 I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp C--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECCCCC
T ss_pred c--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCCccc
Confidence 5 678999999999999999996655 8899999999999999998643 578999999999999887643
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3e-18 Score=152.87 Aligned_cols=151 Identities=19% Similarity=0.274 Sum_probs=96.5
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccc
Q 045950 92 GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQ 171 (405)
Q Consensus 92 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 171 (405)
.+++++++++ .+|..+. ++|+.|++++|+|++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3455667776 4555443 678888888888887666678888888888888888887778888888888888888888
Q ss_pred cCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccC
Q 045950 172 FEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDI 251 (405)
Q Consensus 172 i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~ 251 (405)
|+ .+|... +..+. +|++|++++|++.+..+..|
T Consensus 92 l~-~l~~~~---------------------------------------------f~~l~-~L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 92 IT-ELPKSL---------------------------------------------FEGLF-SLQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp CC-CCCTTT---------------------------------------------TTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred CC-ccCHhH---------------------------------------------ccCCC-CCCEEECCCCCCCEeCHHHc
Confidence 76 333211 11112 45555555555544444555
Q ss_pred CCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCc
Q 045950 252 GLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLS 292 (405)
Q Consensus 252 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 292 (405)
..+++|++|+|++|+|++..+..|..+++|++|+|++|.+.
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555555555555555444444555555555555555553
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.8e-18 Score=154.38 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=101.6
Q ss_pred cEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCC
Q 045950 139 FELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNN 217 (405)
Q Consensus 139 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~ 217 (405)
+.+++++++++ .+|..+. ++|++|++++|+|++..+..+..+. |++|+|++|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i---------------------- 68 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI---------------------- 68 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC----------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC----------------------
Confidence 45666666666 4454332 4566666666666533333333333 44444444444
Q ss_pred CCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCch
Q 045950 218 LNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPE 297 (405)
Q Consensus 218 l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 297 (405)
.+..+..+..+. +|++|++++|++....+..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+.
T Consensus 69 -~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 69 -SELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp -CEECTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred -CCcCHHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 334445555555 788888888888766666677888888888888888877777788888888888888888866666
Q ss_pred hhcCCCCCCEEEccCCcCCC
Q 045950 298 SICRLPKLENFTYSYNFFCS 317 (405)
Q Consensus 298 ~l~~l~~L~~L~Ls~N~l~~ 317 (405)
.|..+++|+.|++++|.+..
T Consensus 147 ~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTCTTCCEEECCSSCEEC
T ss_pred HHhCCCCCCEEEeCCCCcCC
Confidence 67778888888888887765
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=155.39 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=102.5
Q ss_pred cEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCCh-hhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccC
Q 045950 139 FELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPS-AVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANN 216 (405)
Q Consensus 139 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~-~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n 216 (405)
+++++++|.++ .+|..+. ..+++|+|++|+|++..+. .+..+. |++|++++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~------------------- 71 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD------------------- 71 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-------------------
Confidence 46777777776 4555442 3456777777777644332 234444 6666666655553
Q ss_pred CCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCc
Q 045950 217 NLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIP 296 (405)
Q Consensus 217 ~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 296 (405)
..+..+..+. +|++|++++|++.+..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|
T Consensus 72 ----i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 72 ----IEEGAFEGAS-GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp ----ECTTTTTTCT-TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred ----ECHHHhCCCC-CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 2333444444 77777777777776666667777777777777777777667777777777777777777776667
Q ss_pred hhhcCCCCCCEEEccCCcCCCCC
Q 045950 297 ESICRLPKLENFTYSYNFFCSEP 319 (405)
Q Consensus 297 ~~l~~l~~L~~L~Ls~N~l~~~~ 319 (405)
..|..+++|+.|++++|.+.+..
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEECSG
T ss_pred HHhcCCCCCCEEEecCcCCcCCC
Confidence 77777777777777777776543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=7.1e-19 Score=168.87 Aligned_cols=173 Identities=20% Similarity=0.153 Sum_probs=139.5
Q ss_pred CcEEeccccccCCCCChhhhccccceeecCCCCCCCCCCCCc--CCCCcchhhcccCCCCcCCchHHHhhcccCcEEEcc
Q 045950 162 LKFLDIRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNI--GNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILL 239 (405)
Q Consensus 162 L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~ 239 (405)
-+.++++++.++ .+|..+.. .+++|+|++|++++..+..+ ...+|+.|+|++|+|++..+..+..+. +|++|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~~-~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLPS-YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCCT-TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCCC-CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECC
Confidence 468999999998 77875432 28999999999997666666 347799999999999887777788887 99999999
Q ss_pred CCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhh---cCCCCCCEEEccCCcCC
Q 045950 240 NTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESI---CRLPKLENFTYSYNFFC 316 (405)
Q Consensus 240 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~ 316 (405)
+|++.+..+..|..+++|+.|+|++|+|.+..+..|.++++|++|+|++|+|++..+..| ..+++|+.|||++|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999988777888999999999999999997778889999999999999999985433334 56889999999999998
Q ss_pred CCCC----CCCC--CCcccCCCCCCCC
Q 045950 317 SEPL----TCLN--LKDKDDRQNCIPN 337 (405)
Q Consensus 317 ~~~~----~~~~--L~~L~l~~N~l~~ 337 (405)
+.++ .+.. ++.|++++|.+.-
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 7764 2333 4778999987753
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=6.5e-18 Score=150.69 Aligned_cols=153 Identities=17% Similarity=0.225 Sum_probs=113.4
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccc-hhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecccc
Q 045950 92 GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIP-DSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170 (405)
Q Consensus 92 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 170 (405)
.+++++|.++. +|..+. ..+++|+|++|+|++..+ ..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 78899998874 566553 456889999999986644 45788888999999999988777778888888888888888
Q ss_pred ccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCcc
Q 045950 171 QFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQD 250 (405)
Q Consensus 171 ~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~ 250 (405)
++++..+..+ ..+. +|++|++++|++.+..+..
T Consensus 92 ~l~~~~~~~~----------------------------------------------~~l~-~L~~L~Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 92 RLENVQHKMF----------------------------------------------KGLE-SLKTLMLRSNRITCVGNDS 124 (220)
T ss_dssp CCCCCCGGGG----------------------------------------------TTCS-SCCEEECTTSCCCCBCTTS
T ss_pred ccCccCHhHh----------------------------------------------cCCc-CCCEEECCCCcCCeECHhH
Confidence 8873333222 2233 6666666666666666677
Q ss_pred CCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCccc
Q 045950 251 IGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGA 294 (405)
Q Consensus 251 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 294 (405)
|..+++|++|+|++|+|++..|..|..+++|++|+|++|.+...
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 77777888888888888877677788888888888888877654
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=8.4e-18 Score=150.92 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=89.2
Q ss_pred CcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccC
Q 045950 138 LFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANN 216 (405)
Q Consensus 138 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n 216 (405)
.+.++.++++++ .+|..+. ++|++|+|++|++.+..+..+..+. |++|+|++|+++..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i------------------ 79 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL------------------ 79 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc------------------
Confidence 345666666665 4444332 5566666666666544444444444 55555555544321
Q ss_pred CCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCc
Q 045950 217 NLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIP 296 (405)
Q Consensus 217 ~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 296 (405)
.+..+..+. +|++|++++|++.+..+..|..+++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|++..+
T Consensus 80 -----~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 80 -----PVGVFDSLT-QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp -----CTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred -----ChhhcccCC-CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 112233333 6666666666666555556666677777777777776 566666666777777777777764444
Q ss_pred hhhcCCCCCCEEEccCCcCCCC
Q 045950 297 ESICRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 297 ~~l~~l~~L~~L~Ls~N~l~~~ 318 (405)
..+..+++|+.|++++|.+.+.
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCTT
T ss_pred HHHhCCCCCCEEEeeCCCccCC
Confidence 5566666677777776666544
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=8.3e-19 Score=160.92 Aligned_cols=165 Identities=20% Similarity=0.304 Sum_probs=68.3
Q ss_pred CCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecC
Q 045950 113 DLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFIN 191 (405)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~ 191 (405)
++..+++++|.+++ ++ .+..+++|++|++++|+++ .++ .+..+++|++|++++|+++ .++. +..+. |++|+++
T Consensus 20 ~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECC
Confidence 33344444444442 22 2344444444444444444 222 3444444444444444444 2222 33333 4444444
Q ss_pred CCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCC
Q 045950 192 NNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPL 271 (405)
Q Consensus 192 ~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 271 (405)
+|++++ ++.... .+|+.|++++|++++ + ..+..+. +|++|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 94 ~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~-~~l~~l~-~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKN-LNGIPS-ACLSRLFLDNNELRD-T-DSLIHLK-NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSC-CTTCCC-SSCCEEECCSSCCSB-S-GGGTTCT-TCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCC-cCcccc-CcccEEEccCCccCC-C-hhhcCcc-cccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 444442 111111 223333333333322 1 1233333 455555555555432 1 344455555555555555433
Q ss_pred ccccCCCCCCCEEEeecCcCc
Q 045950 272 PESMGNMKSLEQLNVAHNKLS 292 (405)
Q Consensus 272 p~~~~~l~~L~~L~L~~N~l~ 292 (405)
..+..+++|+.|++++|.+.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCccc
Confidence 33444555555555555554
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.9e-18 Score=149.37 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=81.2
Q ss_pred cCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchh
Q 045950 133 RNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVL 211 (405)
Q Consensus 133 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L 211 (405)
..+++|++|++++|.++ .++ .+..+++|++|++++|.+. .+ ..+..++ |++|++++|.+++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~-------------- 102 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTS-------------- 102 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBG--------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCc--------------
Confidence 45667777777777777 455 5677777777777777554 22 2333333 4444444444432
Q ss_pred hcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCC-CCCCCccccCCCCCCCEEEeecCc
Q 045950 212 VLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNN-LVGPLPESMGNMKSLEQLNVAHNK 290 (405)
Q Consensus 212 ~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~ 290 (405)
..+..+..+. +|++|++++|++.+..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|+
T Consensus 103 ---------~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 103 ---------DKIPNLSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp ---------GGSCCCTTCT-TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBC
T ss_pred ---------ccChhhcCCC-CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCC
Confidence 1222223333 55556666665555455555555555566655555 33 333 45555555555555555
Q ss_pred CcccCchhhcCCCCCCEEEccCCcCC
Q 045950 291 LSGAIPESICRLPKLENFTYSYNFFC 316 (405)
Q Consensus 291 l~~~~p~~l~~l~~L~~L~Ls~N~l~ 316 (405)
+++ ++ .+..+++|+.|++++|++.
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CcC-hH-HhccCCCCCEEEeeCcccC
Confidence 553 22 4455555555555555544
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=2.1e-20 Score=189.57 Aligned_cols=187 Identities=18% Similarity=0.201 Sum_probs=153.0
Q ss_pred cCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccc-------------cCCCCChhhhccc-cceee-cCCCCCCC
Q 045950 133 RNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQ-------------FEGDIPSAVFDLK-LDALF-INNNKFSS 197 (405)
Q Consensus 133 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-------------i~~~~p~~~~~~~-L~~L~-L~~N~l~~ 197 (405)
..+++|+.|+|++|+++ .+|..++.+++|+.|++++|. +.+..|..+..+. |+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788889999999987 788889999999999987765 3445555666665 77776 5555443
Q ss_pred CCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCC
Q 045950 198 SLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGN 277 (405)
Q Consensus 198 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 277 (405)
.+..+.+.+|.+... .. . .|+.|++++|++++ +|. ++.+++|+.|+|++|+|+ .+|..++.
T Consensus 424 ---------~L~~l~l~~n~i~~l-----~~-~-~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKM-----EY-A-DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHH-----HH-T-TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------hhhhhhhhccccccc-----Cc-c-CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 366667777766531 11 1 69999999999996 565 999999999999999999 88999999
Q ss_pred CCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCC-C----CCCCCCcccCCCCCCCCCCCCC
Q 045950 278 MKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEP-L----TCLNLKDKDDRQNCIPNRPLQR 342 (405)
Q Consensus 278 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~----~~~~L~~L~l~~N~l~~~p~~~ 342 (405)
+++|+.|+|++|+|++ +| .+..+++|+.|+|++|+|++.+ | .+.+|+.|++++|.|++.|...
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999999999995 77 8999999999999999999985 4 4689999999999999987643
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.1e-17 Score=146.44 Aligned_cols=149 Identities=16% Similarity=0.242 Sum_probs=85.9
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
+++.|++++|++. .++ .+..+++|++|++++|.++. ...+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5666666666666 333 46666666666666665542 2346666666666666666665555566666666666666
Q ss_pred ccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCC-CCCCC
Q 045950 169 FNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTG-LTGCF 247 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~-l~~~~ 247 (405)
+|++.+..+..+.. +. +|++|++++|. +. .+
T Consensus 121 ~n~i~~~~~~~l~~----------------------------------------------l~-~L~~L~L~~n~~i~-~~ 152 (197)
T 4ezg_A 121 HSAHDDSILTKINT----------------------------------------------LP-KVNSIDLSYNGAIT-DI 152 (197)
T ss_dssp SSBCBGGGHHHHTT----------------------------------------------CS-SCCEEECCSCTBCC-CC
T ss_pred CCccCcHhHHHHhh----------------------------------------------CC-CCCEEEccCCCCcc-cc
Confidence 66665433433333 33 45555555554 32 22
Q ss_pred CccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCc
Q 045950 248 PQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLS 292 (405)
Q Consensus 248 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 292 (405)
+ .+..+++|++|++++|++++ ++ .+..+++|++|++++|+|.
T Consensus 153 ~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 153 M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 2 45556666666666666663 33 5666677777777777664
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=7.3e-20 Score=186.89 Aligned_cols=133 Identities=10% Similarity=0.030 Sum_probs=92.8
Q ss_pred CCcchhhcccCCCCcCCchHHHh-hcccCcEEEcc----CCCCCCC-----CCccCCCCCCccEEEccCCC--CCCCCcc
Q 045950 206 SPVSVLVLANNNLNSCIPSSLTK-MAGTLNEIILL----NTGLTGC-----FPQDIGLLNQVTVFDVGFNN--LVGPLPE 273 (405)
Q Consensus 206 ~~L~~L~L~~n~l~~~~p~~l~~-l~~~L~~L~l~----~n~l~~~-----~p~~~~~l~~L~~L~L~~N~--l~~~~p~ 273 (405)
.+|++|++..|.+++..+..+.. +. +|++|+++ .|.+++. ++..+..+++|++|++++|. +++..+.
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 56777777777777666666665 44 78888885 5566543 22235567888888886543 5544444
Q ss_pred ccC-CCCCCCEEEeecCcCccc-CchhhcCCCCCCEEEccCCcCCCCCC-----CCCCCCcccCCCCCCCCCC
Q 045950 274 SMG-NMKSLEQLNVAHNKLSGA-IPESICRLPKLENFTYSYNFFCSEPL-----TCLNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 274 ~~~-~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~~~p 339 (405)
.+. .+++|++|++++|.+++. ++..+..+++|++|++++|.+++... .+.+|++|++++|++++..
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 443 478899999999988763 45556778999999999998865421 4778999999999987753
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3e-18 Score=157.20 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=136.7
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+++.++++++.+.+.. .+..+++|++|++++|+++ .++ .+..+++|++|++++|++++. +. +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence 35666778888887543 5788899999999999998 455 688899999999999999854 44 889999999999
Q ss_pred cccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCC
Q 045950 168 RFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCF 247 (405)
Q Consensus 168 s~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~ 247 (405)
++|+++ .++.... ..|++|++++|++++ ++......+|+.|++++|++++. + .+..+. +|++|++++|.+.+.
T Consensus 93 ~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~-~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLK-NLNGIPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSI-V-MLGFLS-KLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCS-CCTTCCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBC-G-GGGGCT-TCCEEECTTSCCCBC-
T ss_pred CCCccC-CcCcccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCC-h-HHccCC-CCCEEECCCCcCcch-
Confidence 999998 4554433 449999999999985 34333446799999999999864 3 677777 999999999999876
Q ss_pred CccCCCCCCccEEEccCCCCCCC
Q 045950 248 PQDIGLLNQVTVFDVGFNNLVGP 270 (405)
Q Consensus 248 p~~~~~l~~L~~L~L~~N~l~~~ 270 (405)
..+..+++|+.|++++|.+.+.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 7789999999999999999854
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.5e-17 Score=145.13 Aligned_cols=170 Identities=18% Similarity=0.241 Sum_probs=115.8
Q ss_pred eeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCch-HHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCC
Q 045950 187 ALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPS-SLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFN 265 (405)
Q Consensus 187 ~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N 265 (405)
++++++|.++ .+|..+.. .+++|++++|++.+..+. .+..+. +|++|++++|++++..|..|..+++|++|+|++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL-HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC-CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3444444443 33333322 455555555555544443 356666 8999999999999888899999999999999999
Q ss_pred CCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCCCC---CCCcccCCCCC-CCCCCCC
Q 045950 266 NLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLTCL---NLKDKDDRQNC-IPNRPLQ 341 (405)
Q Consensus 266 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~---~L~~L~l~~N~-l~~~p~~ 341 (405)
+|++..+..|.++++|++|+|++|+|++..|..+..+++|++|++++|.+++..+... .++...+..+. ..+.|..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChH
Confidence 9998888888999999999999999998888889999999999999999987654110 12222222222 2334555
Q ss_pred CCccccccccCCCCCCCC
Q 045950 342 RSAMECKSFYAHPVDCGA 359 (405)
Q Consensus 342 ~~~~~~~~~~~np~~C~~ 359 (405)
.....-..+..+.+.|..
T Consensus 169 l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 169 VRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp TTTSBGGGSCTTTCCCCC
T ss_pred HcCCChhhCcHhhcCcCC
Confidence 444444555666666653
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=4.2e-18 Score=177.76 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=123.7
Q ss_pred cCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhc
Q 045950 103 TLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFD 182 (405)
Q Consensus 103 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~ 182 (405)
..++.+..+..|+.|+|++|.+. .++..+.++++|++|+|++|.|+ .+|..|..+++|++|+|++|+|+ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 45778899999999999999999 67777889999999999999999 88999999999999999999999 88999988
Q ss_pred cc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEE
Q 045950 183 LK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVF 260 (405)
Q Consensus 183 ~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 260 (405)
+. |++|+|++|.++ .+|..++. .+|+.|+|++|.+++.+|..+......+..+++++|.+.+.+|.. |+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence 87 999999999998 67777766 679999999999999888888765434456889999999888764 4556
Q ss_pred EccCC--------CCCCCCccccCCCCCCCEEEeecCcCc
Q 045950 261 DVGFN--------NLVGPLPESMGNMKSLEQLNVAHNKLS 292 (405)
Q Consensus 261 ~L~~N--------~l~~~~p~~~~~l~~L~~L~L~~N~l~ 292 (405)
+++.| .+.+..+..+..+..++...+++|.+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 66666 334344445556667777788888774
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=3.2e-19 Score=182.16 Aligned_cols=268 Identities=13% Similarity=0.081 Sum_probs=155.8
Q ss_pred CcEEEEECCCCCCccc----CCccccCCCCCcEEeccCCCCCC----ccchhccCCCCCcEEECCCCcCCccCchhhhCC
Q 045950 88 LTVAGIDLNHANIAGT----LPEELGLLEDLALFHLNSNRFCG----TIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCL 159 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 159 (405)
++++.|+|++|.+.+. ++..+..+++|+.|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 3566666666665544 22234456667777777776652 233444566777777777776663 44555555
Q ss_pred CCCcEEecccccc--------------------------CCCCChhhhccc-cceeecCCCCCCCCCCCC-c-CCC----
Q 045950 160 PSLKFLDIRFNQF--------------------------EGDIPSAVFDLK-LDALFINNNKFSSSLPKN-I-GNS---- 206 (405)
Q Consensus 160 ~~L~~L~Ls~N~i--------------------------~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~-~-~~~---- 206 (405)
++|++|+++.+.. ...++..+...+ |++|++++|.+++..... + ...
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 5555555542111 113344444455 888888888865322111 1 112
Q ss_pred --------------------Ccchhhcc-----------cCCCCcCCchHHH-hhcccCcEEEccCCCCCCCCCccCCC-
Q 045950 207 --------------------PVSVLVLA-----------NNNLNSCIPSSLT-KMAGTLNEIILLNTGLTGCFPQDIGL- 253 (405)
Q Consensus 207 --------------------~L~~L~L~-----------~n~l~~~~p~~l~-~l~~~L~~L~l~~n~l~~~~p~~~~~- 253 (405)
+|+.|+++ .|.+++.....+. .+. +|++|+++.|++++.....+..
T Consensus 323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ-ELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT-TCSEEEEEESCCCHHHHHHHHHH
T ss_pred EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc-cCeEEEeecCCccHHHHHHHHhh
Confidence 34555555 2344332222222 233 6666666666665544444443
Q ss_pred CCCccEEEcc----CCCCCCC-----CccccCCCCCCCEEEeecC--cCcccCchhhc-CCCCCCEEEccCCcCCCCC--
Q 045950 254 LNQVTVFDVG----FNNLVGP-----LPESMGNMKSLEQLNVAHN--KLSGAIPESIC-RLPKLENFTYSYNFFCSEP-- 319 (405)
Q Consensus 254 l~~L~~L~L~----~N~l~~~-----~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~-- 319 (405)
+++|+.|+++ .|++++. ++..+.++++|++|++++| .+++.....+. .+++|+.|++++|++++..
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 6777777775 5666643 3333566788888888753 36655555554 4788999999999987632
Q ss_pred ---CCCCCCCcccCCCCCCCCC--C---CCCCccccccccCCCCCC
Q 045950 320 ---LTCLNLKDKDDRQNCIPNR--P---LQRSAMECKSFYAHPVDC 357 (405)
Q Consensus 320 ---~~~~~L~~L~l~~N~l~~~--p---~~~~~~~~~~~~~np~~C 357 (405)
..+.+|++|++++|.|++. + ...+.++...+.+|.+..
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 3578899999999997642 1 124556666677777544
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.1e-16 Score=139.66 Aligned_cols=127 Identities=21% Similarity=0.334 Sum_probs=69.1
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccch-hccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecccc
Q 045950 92 GIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPD-SFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170 (405)
Q Consensus 92 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 170 (405)
.+++++++++ .+|..+.. +|++|++++|+|++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3445555553 34443322 556666666666543332 2555666666666666666555555666666666666666
Q ss_pred ccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcC
Q 045950 171 QFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSC 221 (405)
Q Consensus 171 ~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 221 (405)
+|++..+..+..+. |++|++++|++++..+..+.. .+|++|++++|.+.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 66544444444444 666666666665555555543 3466666666666543
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.3e-16 Score=134.29 Aligned_cols=132 Identities=21% Similarity=0.205 Sum_probs=102.9
Q ss_pred CcchhhcccCCCC-cCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q 045950 207 PVSVLVLANNNLN-SCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLN 285 (405)
Q Consensus 207 ~L~~L~L~~n~l~-~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 285 (405)
+++.|++++|.+. +.+|..+..+. +|++|++++|.+.+. ..+..+++|++|++++|++.+.+|..+..+++|++|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3555555555554 34555556666 889999999988865 7788889999999999999877787777789999999
Q ss_pred eecCcCcccC-chhhcCCCCCCEEEccCCcCCCCCC-------CCCCCCcccCCCCCCCCCCCC
Q 045950 286 VAHNKLSGAI-PESICRLPKLENFTYSYNFFCSEPL-------TCLNLKDKDDRQNCIPNRPLQ 341 (405)
Q Consensus 286 L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~L~~L~l~~N~l~~~p~~ 341 (405)
+++|.|++.. +..+..+++|+.|++++|.+++.++ .+.+|++|++++|.+..+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 9999998432 2678888999999999999888765 467889999999988877754
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=132.15 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=83.5
Q ss_pred CcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEe
Q 045950 207 PVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNV 286 (405)
Q Consensus 207 ~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 286 (405)
.++.|++++|.++ .+|..+..+. +|++|++++|.|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 4555555555554 3556666666 8888888888888777778888888888888888888777777888888888888
Q ss_pred ecCcCcccCchhhcCCCCCCEEEccCCcCCCC
Q 045950 287 AHNKLSGAIPESICRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 287 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 318 (405)
++|+|++..+..|..+++|+.|++++|.+...
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 88888855555677788888888888887653
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=3.5e-15 Score=128.08 Aligned_cols=111 Identities=18% Similarity=0.179 Sum_probs=59.0
Q ss_pred cchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEee
Q 045950 208 VSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVA 287 (405)
Q Consensus 208 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 287 (405)
++.|++++|++.+..+..+..+. +|++|++++|++.+..+..|..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 33333333333332223333443 56666666666655544555566666666666666664444445556666666666
Q ss_pred cCcCcccCchhhcCCCCCCEEEccCCcCCCCC
Q 045950 288 HNKLSGAIPESICRLPKLENFTYSYNFFCSEP 319 (405)
Q Consensus 288 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 319 (405)
+|+|++..+..+..+++|++|++++|.+.+..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 66665433333455566666666666655443
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.5e-15 Score=128.99 Aligned_cols=110 Identities=19% Similarity=0.200 Sum_probs=55.8
Q ss_pred CCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeec
Q 045950 112 EDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFI 190 (405)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L 190 (405)
++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+. |++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4555555555555544444455555555555555555543344445555555555555555533333333443 555555
Q ss_pred CCCCCCCCCCCCcCC-CCcchhhcccCCCCcC
Q 045950 191 NNNKFSSSLPKNIGN-SPVSVLVLANNNLNSC 221 (405)
Q Consensus 191 ~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 221 (405)
++|++++..+..+.. .+|++|++++|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 555555333333332 4455566666665543
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=2.5e-15 Score=127.86 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCCcEEECCCCcCC-ccCchhhhCCCCCcEEeccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcc
Q 045950 136 RLLFELDVSTNQFS-GCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLA 214 (405)
Q Consensus 136 ~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~ 214 (405)
++|++|++++|+++ +.+|..+..+++|++|++++|.+.+. ..+..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~------------------------------ 71 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP------------------------------ 71 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS------------------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC------------------------------
Confidence 55666666666665 45555556666666666666665521 2222221
Q ss_pred cCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCC-ccccCCCCCCCEEEeecCcCcc
Q 045950 215 NNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPL-PESMGNMKSLEQLNVAHNKLSG 293 (405)
Q Consensus 215 ~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~ 293 (405)
+|++|++++|++.+.+|..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++
T Consensus 72 -----------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 72 -----------------KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp -----------------SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred -----------------CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 3444444444444333333444455555555555555321 1445555666666666666653
Q ss_pred cCc---hhhcCCCCCCEEEccCCcCCCC
Q 045950 294 AIP---ESICRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 294 ~~p---~~l~~l~~L~~L~Ls~N~l~~~ 318 (405)
..+ ..+..+++|+.|++++|.+...
T Consensus 135 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 135 LNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp STTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred hHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 322 2455566666666666655543
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=4.3e-15 Score=129.57 Aligned_cols=124 Identities=20% Similarity=0.241 Sum_probs=104.8
Q ss_pred chhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeec
Q 045950 209 SVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAH 288 (405)
Q Consensus 209 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 288 (405)
+.+++++|.+. .+|..+. .++++|++++|++. .+|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 34556666655 3554433 38999999999998 6678999999999999999999988788899999999999999
Q ss_pred CcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCCCC
Q 045950 289 NKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPN 337 (405)
Q Consensus 289 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~ 337 (405)
|+|++..+..|..+++|+.|+|++|+|++.++ .+.+|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99998778889999999999999999998776 35689999999998754
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=4.5e-15 Score=123.59 Aligned_cols=107 Identities=19% Similarity=0.234 Sum_probs=89.1
Q ss_pred CcEEEEECCCCCCc-ccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEe
Q 045950 88 LTVAGIDLNHANIA-GTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLD 166 (405)
Q Consensus 88 ~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 166 (405)
.+++.|++++|++. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 47889999999998 78888889999999999999999865 6788999999999999999976888888899999999
Q ss_pred ccccccCCC-CChhhhccc-cceeecCCCCCC
Q 045950 167 IRFNQFEGD-IPSAVFDLK-LDALFINNNKFS 196 (405)
Q Consensus 167 Ls~N~i~~~-~p~~~~~~~-L~~L~L~~N~l~ 196 (405)
+++|++++. .+..+..++ |++|++++|.++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 999998742 225566665 788887777776
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.4e-15 Score=125.32 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=61.2
Q ss_pred CCCCcEEeccCCCCC-CccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-ccee
Q 045950 111 LEDLALFHLNSNRFC-GTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDAL 188 (405)
Q Consensus 111 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L 188 (405)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+.+|..+..+. |++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367888888888887 66777778888888888888888754 6677788888888888888754555554444 6666
Q ss_pred ecCCCCCC
Q 045950 189 FINNNKFS 196 (405)
Q Consensus 189 ~L~~N~l~ 196 (405)
++++|.++
T Consensus 94 ~ls~N~i~ 101 (149)
T 2je0_A 94 NLSGNKIK 101 (149)
T ss_dssp ECTTSCCC
T ss_pred ECCCCcCC
Confidence 66555554
No 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=6.1e-17 Score=165.21 Aligned_cols=201 Identities=13% Similarity=0.043 Sum_probs=128.0
Q ss_pred CCCCCcEEECCCCcCCccCc-hhhhCCCCCcEEeccccccCCC-CChhhhccc-cceeecCC---------CCCCCCCCC
Q 045950 134 NMRLLFELDVSTNQFSGCFP-SVVLCLPSLKFLDIRFNQFEGD-IPSAVFDLK-LDALFINN---------NKFSSSLPK 201 (405)
Q Consensus 134 ~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~i~~~-~p~~~~~~~-L~~L~L~~---------N~l~~~~~~ 201 (405)
.+++|++|++++|.+++... ..+..+++|++|++++| +... ++......+ |++|++.+ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 34666677776666553322 22446667777777766 3211 111122234 77777733 333321111
Q ss_pred Cc--CCCCcchhhcccCCCCcCCchHHHh-hcccCcEEEcc--C----CCCCCCC-----CccCCCCCCccEEEccCCCC
Q 045950 202 NI--GNSPVSVLVLANNNLNSCIPSSLTK-MAGTLNEIILL--N----TGLTGCF-----PQDIGLLNQVTVFDVGFNNL 267 (405)
Q Consensus 202 ~~--~~~~L~~L~L~~n~l~~~~p~~l~~-l~~~L~~L~l~--~----n~l~~~~-----p~~~~~l~~L~~L~L~~N~l 267 (405)
.+ +..+|+.|++..|.+++.....+.. +. +|++|+++ + +.++... +..+..+++|+.|++++ .+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRP-NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT-TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC-CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 11 1356888888888887665556654 44 89999998 3 4454221 11255678899999977 66
Q ss_pred CCCCccccCC-CCCCCEEEeecCcCcccCchhh-cCCCCCCEEEccCCcCCCCCC-----CCCCCCcccCCCCCCCC
Q 045950 268 VGPLPESMGN-MKSLEQLNVAHNKLSGAIPESI-CRLPKLENFTYSYNFFCSEPL-----TCLNLKDKDDRQNCIPN 337 (405)
Q Consensus 268 ~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~-----~~~~L~~L~l~~N~l~~ 337 (405)
++..+..+.. +++|++|+|++|.+++.....+ ..+++|++|++++|.+++... .+.+|+.|++++|.++.
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 6555555554 7899999999999986655555 668999999999999865332 46789999999998843
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=8.9e-17 Score=140.82 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=54.6
Q ss_pred ccCCCCCcEEeccCCCCCCccch------hccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhh
Q 045950 108 LGLLEDLALFHLNSNRFCGTIPD------SFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVF 181 (405)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~ 181 (405)
+.....++.++++.+.+.+.+|. .|..+++|++|++++|++++ +| .+..+++|++|++++|++. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 33445556666666666655554 67777777777777777774 55 6677777777777777776 5555544
Q ss_pred ccc-cceeecCCCCCC
Q 045950 182 DLK-LDALFINNNKFS 196 (405)
Q Consensus 182 ~~~-L~~L~L~~N~l~ 196 (405)
.++ |++|++++|+++
T Consensus 91 ~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 91 VADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHCSEEEEEEEECC
T ss_pred cCCcCCEEECcCCcCC
Confidence 433 555555555554
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=1.1e-16 Score=140.31 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=107.1
Q ss_pred ccCCCCCcEEECCCCcCCccCch------hhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcC
Q 045950 132 FRNMRLLFELDVSTNQFSGCFPS------VVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIG 204 (405)
Q Consensus 132 ~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~ 204 (405)
+.....++.++++.+.+.+..|. .+..+++|++|++++|++.+ +| .+..+. |++|++++|.++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-------- 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-------- 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--------
Confidence 45566777777777777766665 78888888888888888874 66 555555 777777777765
Q ss_pred CCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCc-cccCCCCCCCE
Q 045950 205 NSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLP-ESMGNMKSLEQ 283 (405)
Q Consensus 205 ~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~ 283 (405)
.+|..+..+. +|++|++++|++.+ ++ .+..+++|++|++++|++++..+ ..+..+++|++
T Consensus 84 ----------------~l~~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 84 ----------------KIENLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp ----------------SCSSHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred ----------------cccchhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence 2334444444 77777777777765 33 46667778888888887773222 36777888888
Q ss_pred EEeecCcCcccCch----------hhcCCCCCCEEEccCCcCCC
Q 045950 284 LNVAHNKLSGAIPE----------SICRLPKLENFTYSYNFFCS 317 (405)
Q Consensus 284 L~L~~N~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~~ 317 (405)
|++++|.+.+.+|. .+..+++|+.|| +|.++.
T Consensus 145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88888888765443 266778888776 555543
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=6.3e-15 Score=139.40 Aligned_cols=237 Identities=11% Similarity=0.019 Sum_probs=139.7
Q ss_pred CcEEEEECCCCCCcccCCccccC-CCCCcEEeccCCCCC--------------------CccchhccC--------CCCC
Q 045950 88 LTVAGIDLNHANIAGTLPEELGL-LEDLALFHLNSNRFC--------------------GTIPDSFRN--------MRLL 138 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--------------------~~~~~~~~~--------l~~L 138 (405)
.+++.|.++++ +...--..+.. +++|+.|||++|+|. ......|.+ +.+|
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 35777777653 21111112333 788999999999887 122335666 7888
Q ss_pred cEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc-cceeecCCCCC----CCCCCCCcC-CCCcc---
Q 045950 139 FELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK-LDALFINNNKF----SSSLPKNIG-NSPVS--- 209 (405)
Q Consensus 139 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~-L~~L~L~~N~l----~~~~~~~~~-~~~L~--- 209 (405)
++|+|.+ .++.....+|.++++|+.|++++|.+....+..+.... +.++.+..+.. .......+. ...++
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence 8888877 77756666777888888888888877623333333322 44444433211 100011110 01111
Q ss_pred -----------------------hhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCC
Q 045950 210 -----------------------VLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNN 266 (405)
Q Consensus 210 -----------------------~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 266 (405)
.+.+.++ +.......+.....+|+.+++++|++.......|.++.+|+.|+|.+|
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN- 260 (329)
T ss_dssp EECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-
T ss_pred EecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-
Confidence 1112111 110011122221237888888888887666777888888888888877
Q ss_pred CCCCCccccCCCCCCC-EEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCccc
Q 045950 267 LVGPLPESMGNMKSLE-QLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKD 329 (405)
Q Consensus 267 l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~ 329 (405)
+.......|.++.+|+ .+++.+ .++...+..|.++++|+.+++++|+++.+.. .|.+|+.++
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6655566788888888 888877 6665556778888888888888888776654 345566554
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=7.8e-16 Score=156.98 Aligned_cols=84 Identities=18% Similarity=0.159 Sum_probs=50.4
Q ss_pred CcEEEEECCCCCCcccCCcccc-CCCCCcEEeccCC-CCCCc-cchhccCCCCCcEEECCCCcCCccCchhhh----CCC
Q 045950 88 LTVAGIDLNHANIAGTLPEELG-LLEDLALFHLNSN-RFCGT-IPDSFRNMRLLFELDVSTNQFSGCFPSVVL----CLP 160 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~ 160 (405)
.+++.|+|+++.+.+..+..+. .+++|++|+|++| .++.. ++..+.++++|++|++++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3677777777776665555554 4677777777776 44422 333344667777777777766544333332 445
Q ss_pred CCcEEeccccc
Q 045950 161 SLKFLDIRFNQ 171 (405)
Q Consensus 161 ~L~~L~Ls~N~ 171 (405)
+|++|++++|.
T Consensus 185 ~L~~L~l~~~~ 195 (594)
T 2p1m_B 185 SLVSLNISCLA 195 (594)
T ss_dssp CCCEEECTTCC
T ss_pred cCcEEEecccC
Confidence 66666666665
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=2.9e-14 Score=134.89 Aligned_cols=219 Identities=11% Similarity=0.004 Sum_probs=163.1
Q ss_pred CCcEEEEECCCCCCc--------------------ccCCccccC--------CCCCcEEeccCCCCCCccchhccCCCCC
Q 045950 87 SLTVAGIDLNHANIA--------------------GTLPEELGL--------LEDLALFHLNSNRFCGTIPDSFRNMRLL 138 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~--------------------~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 138 (405)
..+++.|||++|++. .....+|.+ +++|+.|+|.+ .++.+-..+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 357999999999987 223345777 99999999999 8887777789999999
Q ss_pred cEEECCCCcCCccCchhhhCCCCCcEEecccccc----CCCCChhhhccc---------------------------cce
Q 045950 139 FELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQF----EGDIPSAVFDLK---------------------------LDA 187 (405)
Q Consensus 139 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i----~~~~p~~~~~~~---------------------------L~~ 187 (405)
++|++++|.+....+..|.++.++.++.+..+.. .......+.... ++.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999999999877788898888888887766322 100011111111 333
Q ss_pred eecCCCCCCCCCCCCc--CCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCcc-EEEccC
Q 045950 188 LFINNNKFSSSLPKNI--GNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVT-VFDVGF 264 (405)
Q Consensus 188 L~L~~N~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~L~~ 264 (405)
+.+.++-.. .....+ ...+|+.+++++|+++......|..+. +|+++++.+| +.......|.++.+|+ .+++.+
T Consensus 207 l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~-~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 207 LTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK-YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred EEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-CCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 333222100 000000 135789999999999876666677777 9999999998 7777788999999999 999998
Q ss_pred CCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEc
Q 045950 265 NNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTY 310 (405)
Q Consensus 265 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 310 (405)
+++...+..|.++++|+.+++++|.++......|.++++|+.++.
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 777666788999999999999999999777778999999999864
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=5.5e-15 Score=126.80 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=68.6
Q ss_pred hhCCCCCcEEeccccccCCCCChhhhcc-ccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCc
Q 045950 156 VLCLPSLKFLDIRFNQFEGDIPSAVFDL-KLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLN 234 (405)
Q Consensus 156 l~~l~~L~~L~Ls~N~i~~~~p~~~~~~-~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~ 234 (405)
+..+.+|++|++++|++. .++...... .|++|++++|.+++. ..+..+. +|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-------------------------~~l~~l~-~L~ 67 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-------------------------DGFPLLR-RLK 67 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-------------------------CCCCCCS-SCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-------------------------cccccCC-CCC
Confidence 445666777777777766 444433333 266666666655521 1122222 555
Q ss_pred EEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCcc--ccCCCCCCCEEEeecCcCcccCchh----hcCCCCCCEE
Q 045950 235 EIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPE--SMGNMKSLEQLNVAHNKLSGAIPES----ICRLPKLENF 308 (405)
Q Consensus 235 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L 308 (405)
+|++++|.+.+..+..+..+++|++|++++|++. .+|. .+..+++|++|++++|.++ .+|.. +..+++|+.|
T Consensus 68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp EEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEE
T ss_pred EEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcccee
Confidence 5555555555433333355555555555555554 3343 4555556666666666655 33442 5555566666
Q ss_pred EccCCcC
Q 045950 309 TYSYNFF 315 (405)
Q Consensus 309 ~Ls~N~l 315 (405)
|+++|.+
T Consensus 146 d~~~n~~ 152 (176)
T 1a9n_A 146 DFQKVKL 152 (176)
T ss_dssp TTEECCH
T ss_pred CCCcCCH
Confidence 6555554
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=8.3e-14 Score=118.79 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=76.9
Q ss_pred chhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeec
Q 045950 209 SVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAH 288 (405)
Q Consensus 209 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 288 (405)
+.+++++|.++. +|..+. .++++|++++|+|.+..+..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 12 ~~l~~s~n~l~~-ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 344444444442 443332 2778888888888877777788888888888888888866666677888888888888
Q ss_pred CcCcccCchhhcCCCCCCEEEccCCcCCCCC
Q 045950 289 NKLSGAIPESICRLPKLENFTYSYNFFCSEP 319 (405)
Q Consensus 289 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 319 (405)
|+|++..+..|..+++|++|+|++|.++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8888655556778888888888888877654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.3e-13 Score=117.59 Aligned_cols=104 Identities=23% Similarity=0.295 Sum_probs=84.0
Q ss_pred EEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecccc
Q 045950 91 AGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170 (405)
Q Consensus 91 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 170 (405)
+.+++++|+++. +|..+ .++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 457788888874 66555 378899999999999877888999999999999999999666667788999999999999
Q ss_pred ccCCCCChhhhccc-cceeecCCCCCCC
Q 045950 171 QFEGDIPSAVFDLK-LDALFINNNKFSS 197 (405)
Q Consensus 171 ~i~~~~p~~~~~~~-L~~L~L~~N~l~~ 197 (405)
+|++..+..+..+. |++|+|++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99854445566666 8888888888874
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=1.1e-13 Score=118.69 Aligned_cols=105 Identities=23% Similarity=0.251 Sum_probs=81.1
Q ss_pred CCcEEEEECCCCCCcccCCccccCCC-CCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 87 SLTVAGIDLNHANIAGTLPEELGLLE-DLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
..+++.|++++|++.. ++. +..+. +|+.|++++|.+++. ..|..+++|++|++++|+|++..+..+..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3478889999998884 443 55544 899999999998854 568888899999999999985544556888899999
Q ss_pred eccccccCCCCCh--hhhccc-cceeecCCCCCC
Q 045950 166 DIRFNQFEGDIPS--AVFDLK-LDALFINNNKFS 196 (405)
Q Consensus 166 ~Ls~N~i~~~~p~--~~~~~~-L~~L~L~~N~l~ 196 (405)
++++|++. .+|. .+..++ |++|++++|.++
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 99999886 6665 566665 888888888776
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2e-13 Score=116.93 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=76.1
Q ss_pred chhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeec
Q 045950 209 SVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAH 288 (405)
Q Consensus 209 ~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 288 (405)
+.+++++|.+. .+|..+. .+|++|++++|++.+..+..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34455555553 3444333 2778888888888877777788888888888888888865555567788888888888
Q ss_pred CcCcccCchhhcCCCCCCEEEccCCcCCCCCC
Q 045950 289 NKLSGAIPESICRLPKLENFTYSYNFFCSEPL 320 (405)
Q Consensus 289 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 320 (405)
|+|++..+..|..+++|+.|+|++|.+.....
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88885444457778888888888887775543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=5.3e-13 Score=114.20 Aligned_cols=104 Identities=22% Similarity=0.307 Sum_probs=87.0
Q ss_pred EEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecccc
Q 045950 91 AGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFN 170 (405)
Q Consensus 91 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 170 (405)
+.+++++|++. .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46889999986 6676664 89999999999999888889999999999999999999665666789999999999999
Q ss_pred ccCCCCChhhhccc-cceeecCCCCCCC
Q 045950 171 QFEGDIPSAVFDLK-LDALFINNNKFSS 197 (405)
Q Consensus 171 ~i~~~~p~~~~~~~-L~~L~L~~N~l~~ 197 (405)
+|.+..+..+..+. |++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99844444466666 9999999998873
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=3.1e-12 Score=124.08 Aligned_cols=237 Identities=11% Similarity=0.102 Sum_probs=158.4
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
.++.+.+.+ .++..-..+|.+. +|+.+.+..+ ++.+-..+|.+ .+|+.+.+.. .++......|.++.+|+.+++.
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 344555543 3554555667764 6888888766 66555566776 4688888875 6665666778888888888888
Q ss_pred ccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCC
Q 045950 169 FNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGC 246 (405)
Q Consensus 169 ~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~ 246 (405)
+|+++ .++...+... |+.+.+..+ +.......|.. .+|+.+++..| +.......|.. . +|+.+.+ .+.+...
T Consensus 189 ~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~-~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 189 KTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-S-GITTVKL-PNGVTNI 262 (401)
T ss_dssp TSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-C-CCSEEEE-ETTCCEE
T ss_pred CCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-C-CccEEEe-CCCccEE
Confidence 88887 5554444444 888888744 55344445544 46888887764 44333334444 4 7888888 4556656
Q ss_pred CCccCCCCCCccEEEccCCCCC-----CCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC-
Q 045950 247 FPQDIGLLNQVTVFDVGFNNLV-----GPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL- 320 (405)
Q Consensus 247 ~p~~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~- 320 (405)
....|.++++|+.+++.+|.+. ......|.++++|+.++|.+ .++..-...|.++.+|+.+++..| ++.+..
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 6677888888888888877664 24456678888888888884 466455667778888888888654 544433
Q ss_pred ---CCCCCCcccCCCCCCCCCC
Q 045950 321 ---TCLNLKDKDDRQNCIPNRP 339 (405)
Q Consensus 321 ---~~~~L~~L~l~~N~l~~~p 339 (405)
.| +|+.+++.+|.+..++
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCC
T ss_pred hCCCC-CCCEEEEcCCCCcccc
Confidence 46 7888888888766654
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=4.7e-12 Score=122.83 Aligned_cols=236 Identities=11% Similarity=0.049 Sum_probs=161.5
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEec
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDI 167 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 167 (405)
.+++.+++..+ +...-..+|.+ .+|+.+.+.. .++..-..+|.++.+|+.+++.+|+++......|. ..+|+.+.|
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 36777887665 66566667777 4688888875 66655667788888888888888888854445554 578888888
Q ss_pred cccccCCCCChhhhccc-cceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCC--
Q 045950 168 RFNQFEGDIPSAVFDLK-LDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLT-- 244 (405)
Q Consensus 168 s~N~i~~~~p~~~~~~~-L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~-- 244 (405)
..+ +...-...+..+. |+.+++..| ++......|...+|+.+.+. +.+.......|..+. +|+.+++.+|.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCP-ELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCT-TCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCccEEChhHhhCCC-CCCEEEeCCccccCC
Confidence 754 5533344555555 888888765 44344555656678888884 445544455666666 8888888877664
Q ss_pred ---CCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCCC
Q 045950 245 ---GCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPLT 321 (405)
Q Consensus 245 ---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 321 (405)
......|.++.+|+.++|. +.++......|.++.+|+.+.|..| ++......|.++ +|+.+++++|.+......
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 3455678888888888888 4466555667888888888888555 664556677777 888888888877654432
Q ss_pred ----C-CCCCcccCCCCC
Q 045950 322 ----C-LNLKDKDDRQNC 334 (405)
Q Consensus 322 ----~-~~L~~L~l~~N~ 334 (405)
+ ..++.|.+..+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SCCCSCTTCCEEEECGGG
T ss_pred cccCCCCCccEEEeCHHH
Confidence 2 245555555443
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=2.7e-12 Score=122.04 Aligned_cols=102 Identities=19% Similarity=0.222 Sum_probs=85.5
Q ss_pred ECCCC-CCcccCCccccCCCCCcEEeccC-CCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccc
Q 045950 94 DLNHA-NIAGTLPEELGLLEDLALFHLNS-NRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQ 171 (405)
Q Consensus 94 ~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 171 (405)
+++++ ++. .+|. |..+++|+.|+|++ |+|++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 33455 677 4777 99999999999996 99998777889999999999999999998888899999999999999999
Q ss_pred cCCCCChhhhccccceeecCCCCCCC
Q 045950 172 FEGDIPSAVFDLKLDALFINNNKFSS 197 (405)
Q Consensus 172 i~~~~p~~~~~~~L~~L~L~~N~l~~ 197 (405)
|++..+..+..+.|++|+|.+|.+..
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccC
Confidence 99444444444559999999998873
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=3.6e-14 Score=136.39 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=30.3
Q ss_pred CCCcEEeccCCCCCCccchhccC-----CCCCcEEECCCCcCCccCchhh-hCCCCCcEEeccccccC
Q 045950 112 EDLALFHLNSNRFCGTIPDSFRN-----MRLLFELDVSTNQFSGCFPSVV-LCLPSLKFLDIRFNQFE 173 (405)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~i~ 173 (405)
+.|+.|+|++|.++......+.. ..+|++|+|++|.++......+ ..+.+|++|+|++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 45666666666665432222221 1456666666666553222222 12345555555555554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.6e-11 Score=116.61 Aligned_cols=103 Identities=20% Similarity=0.209 Sum_probs=53.8
Q ss_pred hhcccC-CCCcCCchHHHhhcccCcEEEccC-CCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeec
Q 045950 211 LVLANN-NLNSCIPSSLTKMAGTLNEIILLN-TGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAH 288 (405)
Q Consensus 211 L~L~~n-~l~~~~p~~l~~l~~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 288 (405)
++++++ .++. +|. +..+. +|++|+|++ |.|.+..+..|..+++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCc-cCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 445554 4543 444 44444 555555553 555555555555555555555555555555555555555555555555
Q ss_pred CcCcccCchhhcCCCCCCEEEccCCcCCC
Q 045950 289 NKLSGAIPESICRLPKLENFTYSYNFFCS 317 (405)
Q Consensus 289 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 317 (405)
|+|++..+..+..++ |+.|+|.+|.|..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 555533333333333 5555555555543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1e-13 Score=133.28 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=95.9
Q ss_pred CCCCcEEECCCCcCCccCchhhhC-----CCCCcEEeccccccCCCCChhhhc-cc-cceeecCCCCCCCCCCCCcCCCC
Q 045950 135 MRLLFELDVSTNQFSGCFPSVVLC-----LPSLKFLDIRFNQFEGDIPSAVFD-LK-LDALFINNNKFSSSLPKNIGNSP 207 (405)
Q Consensus 135 l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~i~~~~p~~~~~-~~-L~~L~L~~N~l~~~~~~~~~~~~ 207 (405)
++.|++|+|++|.++......+.. ..+|++|+|++|.+.......+.. +. |++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L---- 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL---- 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH----
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH----
Confidence 457889999999988544444333 268999999999886433333322 22 7777777776653211111
Q ss_pred cchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCC----CCccCCCCCCccEEEccCCCCCCC----CccccCCCC
Q 045950 208 VSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGC----FPQDIGLLNQVTVFDVGFNNLVGP----LPESMGNMK 279 (405)
Q Consensus 208 L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~ 279 (405)
...+.....+|++|++++|.+... +...+...++|++|+|++|.|++. +...+...+
T Consensus 147 ---------------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 147 ---------------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp ---------------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred ---------------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 011111012566666666665431 223334566677777777776632 234455666
Q ss_pred CCCEEEeecCcCccc----CchhhcCCCCCCEEEccCCcCCCC
Q 045950 280 SLEQLNVAHNKLSGA----IPESICRLPKLENFTYSYNFFCSE 318 (405)
Q Consensus 280 ~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 318 (405)
+|++|+|++|.|++. +...+...++|++|||++|.|++.
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 777777777777643 233444567777777777777643
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=3.9e-10 Score=107.56 Aligned_cols=206 Identities=16% Similarity=0.196 Sum_probs=103.2
Q ss_pred CCcEEEEECCCCCCcc-c-------CCccccCCCCCcEEeccCCCCC---------CccchhccCCCCCcEEECCCCcCC
Q 045950 87 SLTVAGIDLNHANIAG-T-------LPEELGLLEDLALFHLNSNRFC---------GTIPDSFRNMRLLFELDVSTNQFS 149 (405)
Q Consensus 87 ~~~l~~L~L~~n~l~~-~-------~p~~l~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~ 149 (405)
..+|+.|.+......+ . +..++..+++|+.|.+.++... +.+...+..+++|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467777777655442 1 1233456788888888665331 124455667788888888877311
Q ss_pred ccCchhhhCCCCCcEEeccccccCCCCChhhh--ccc-cceeecCC--CCCCCCCCCCcCCCCcchhhcccCCCCcCCch
Q 045950 150 GCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVF--DLK-LDALFINN--NKFSSSLPKNIGNSPVSVLVLANNNLNSCIPS 224 (405)
Q Consensus 150 ~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~--~~~-L~~L~L~~--N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 224 (405)
.++. + .+++|++|+|..+.+.......+. .++ |++|+|+. |...+.. .++.+.- .+.+
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-------~~~~l~~---~l~~---- 248 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-------DMNVFRP---LFSK---- 248 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-------CGGGTGG---GSCT----
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-------hHHHHHH---HHhc----
Confidence 2232 3 377888888888776533333333 334 77777643 2211100 0000000 0000
Q ss_pred HHHhhcccCcEEEccCCCCCCCCCccC---CCCCCccEEEccCCCCCCC----CccccCCCCCCCEEEeecCcCcccCch
Q 045950 225 SLTKMAGTLNEIILLNTGLTGCFPQDI---GLLNQVTVFDVGFNNLVGP----LPESMGNMKSLEQLNVAHNKLSGAIPE 297 (405)
Q Consensus 225 ~l~~l~~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~ 297 (405)
..++ +|++|++.+|.+.......+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.|++....
T Consensus 249 --~~~p-~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 249 --DRFP-NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp --TTCT-TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred --CCCC-CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 0122 55555555555432211111 2345666666666666542 222233456666666666666544333
Q ss_pred hhcC-CCCCCEEEccCCc
Q 045950 298 SICR-LPKLENFTYSYNF 314 (405)
Q Consensus 298 ~l~~-l~~L~~L~Ls~N~ 314 (405)
.+.. + ...+++++|+
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 3332 2 3445665554
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=2.8e-09 Score=101.65 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=108.5
Q ss_pred CCCcEEeccCCCCCC-c-------cchhccCCCCCcEEECCCCcCC---------ccCchhhhCCCCCcEEeccccccCC
Q 045950 112 EDLALFHLNSNRFCG-T-------IPDSFRNMRLLFELDVSTNQFS---------GCFPSVVLCLPSLKFLDIRFNQFEG 174 (405)
Q Consensus 112 ~~L~~L~Ls~n~l~~-~-------~~~~~~~l~~L~~L~Ls~N~l~---------~~~p~~l~~l~~L~~L~Ls~N~i~~ 174 (405)
..++.|.+......+ . +..+..++++|+.|.+..+... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456677776555432 1 1223445677777777654321 123344455666666666655211
Q ss_pred CCChhhhccccceeecCCCCCCCCCCCCcCCCCcchhhcccCCCCcCCchHHH--hhcccCcEEEccC--CCCCCC----
Q 045950 175 DIPSAVFDLKLDALFINNNKFSSSLPKNIGNSPVSVLVLANNNLNSCIPSSLT--KMAGTLNEIILLN--TGLTGC---- 246 (405)
Q Consensus 175 ~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~--~l~~~L~~L~l~~--n~l~~~---- 246 (405)
.++. +...+|+.|++..+.+.......+. .++ +|++|+|+. |...+.
T Consensus 186 ~l~~------------------------~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp-~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 186 SIGK------------------------KPRPNLKSLEIISGGLPDSVVEDILGSDLP-NLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp BCCS------------------------CBCTTCSEEEEECSBCCHHHHHHHHHSBCT-TCCEEEEECBCGGGTCCSCGG
T ss_pred eecc------------------------ccCCCCcEEEEecCCCChHHHHHHHHccCC-CCcEEEEeccccccccchhHH
Confidence 1111 1223455555555444332223333 344 788888753 221111
Q ss_pred -CCccC--CCCCCccEEEccCCCCCCCCcccc---CCCCCCCEEEeecCcCcccC----chhhcCCCCCCEEEccCCcCC
Q 045950 247 -FPQDI--GLLNQVTVFDVGFNNLVGPLPESM---GNMKSLEQLNVAHNKLSGAI----PESICRLPKLENFTYSYNFFC 316 (405)
Q Consensus 247 -~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~ 316 (405)
+...+ ..+++|++|+|.+|.+.+..+..+ ..+++|++|+|+.|.|.+.. +..+..+++|+.|++++|.|+
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11122 247889999999888874333333 25788999999999988643 333445688999999999877
Q ss_pred CCCCC-CCC--CCcccCCCCC
Q 045950 317 SEPLT-CLN--LKDKDDRQNC 334 (405)
Q Consensus 317 ~~~~~-~~~--L~~L~l~~N~ 334 (405)
..... +.. ...++++.|+
T Consensus 321 d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHCCSEEECCSBC
T ss_pred HHHHHHHHHHcCCEEEecCCc
Confidence 54321 111 2456777765
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.63 E-value=4.6e-07 Score=87.34 Aligned_cols=79 Identities=8% Similarity=0.035 Sum_probs=45.0
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCC---CCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEE
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNR---FCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFL 165 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 165 (405)
.++.+.+..+ ++..-..+|.++.+|+.+.+..|. ++..-..+|..+.+|+.+.+..+ ++......|..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 3666666543 555556677788888888776653 44333445666666665555443 332334445555556655
Q ss_pred eccc
Q 045950 166 DIRF 169 (405)
Q Consensus 166 ~Ls~ 169 (405)
.+..
T Consensus 143 ~lp~ 146 (394)
T 4gt6_A 143 TIPE 146 (394)
T ss_dssp ECCT
T ss_pred cccc
Confidence 5543
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=4e-07 Score=87.77 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=53.1
Q ss_pred cCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEcc
Q 045950 232 TLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYS 311 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 311 (405)
.++.+....+.+. ...|..+.+|+.+.+..+ ++......|.++.+|+.+++.++ ++..-..+|.++.+|+.+++.
T Consensus 277 ~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 277 GLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 4444444443321 234556666777766543 44344455666777777777543 543445566667777777776
Q ss_pred CCcCCCCCC----CCCCCCcccCCC
Q 045950 312 YNFFCSEPL----TCLNLKDKDDRQ 332 (405)
Q Consensus 312 ~N~l~~~~~----~~~~L~~L~l~~ 332 (405)
.| ++.+.. .|.+|+.+++..
T Consensus 352 ~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 352 LS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred cc-ccEehHHHhhCCCCCCEEEECC
Confidence 55 443332 456677666644
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=2.9e-08 Score=85.36 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=60.4
Q ss_pred CcEEEEECCCC-CCccc----CCccccCCCCCcEEeccCCCCCCc----cchhccCCCCCcEEECCCCcCCcc----Cch
Q 045950 88 LTVAGIDLNHA-NIAGT----LPEELGLLEDLALFHLNSNRFCGT----IPDSFRNMRLLFELDVSTNQFSGC----FPS 154 (405)
Q Consensus 88 ~~l~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~ 154 (405)
.+++.|+|++| .+... +...+...+.|++|+|++|.|... +...+...+.|++|+|++|.|+.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 35667777776 66532 334455566677777777776632 233444556677777777776643 234
Q ss_pred hhhCCCCCcEEec--cccccCCCCCh----hhhccc-cceeecCCCCCC
Q 045950 155 VVLCLPSLKFLDI--RFNQFEGDIPS----AVFDLK-LDALFINNNKFS 196 (405)
Q Consensus 155 ~l~~l~~L~~L~L--s~N~i~~~~p~----~~~~~~-L~~L~L~~N~l~ 196 (405)
.+...++|++|+| ++|.|...... .+.... |++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4555566777777 66666532222 222222 666666655543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.51 E-value=1.2e-06 Score=84.53 Aligned_cols=238 Identities=8% Similarity=0.090 Sum_probs=127.6
Q ss_pred CCCcEEEEECCCCC---CcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCC
Q 045950 86 HSLTVAGIDLNHAN---IAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSL 162 (405)
Q Consensus 86 ~~~~l~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 162 (405)
...+|+.+.+..+. ++..-..+|..+..|+.+.+..+ ++......|..+.+|+.+.+..+. .......|..+.+|
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L 162 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSL 162 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTC
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceeccccc
Confidence 34578888876553 55445567888888888877654 443455667888888888887543 33555677778888
Q ss_pred cEEeccccccCCCCChhhhccccceeecCCCCCCCCCCCCcCC-CCcc--------------------------------
Q 045950 163 KFLDIRFNQFEGDIPSAVFDLKLDALFINNNKFSSSLPKNIGN-SPVS-------------------------------- 209 (405)
Q Consensus 163 ~~L~Ls~N~i~~~~p~~~~~~~L~~L~L~~N~l~~~~~~~~~~-~~L~-------------------------------- 209 (405)
+.+.+..+ +...-...+....|+.+.+..+-.. .....+.. ..+.
T Consensus 163 ~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T 4gt6_A 163 HTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPS 240 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCT
T ss_pred ccccccce-eeEeccccccccceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccccccccccccccc
Confidence 88887654 2212222232223555555432211 00001100 0000
Q ss_pred -----hhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEE
Q 045950 210 -----VLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQL 284 (405)
Q Consensus 210 -----~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 284 (405)
.+.+. +.+...-...|.... .|+.+.+..+.. ......|.++.+|+.+.+. +.+.......|.++.+|+.+
T Consensus 241 ~~~~~~~~ip-~~v~~i~~~aF~~c~-~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i 316 (394)
T 4gt6_A 241 QREDPAFKIP-NGVARIETHAFDSCA-YLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSI 316 (394)
T ss_dssp TCCCSEEECC-TTEEEECTTTTTTCS-SCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEE
T ss_pred ccccceEEcC-CcceEcccceeeecc-cccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEE
Confidence 00000 001111112333333 667777654432 2334556667777777765 33443444556667777777
Q ss_pred EeecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCC
Q 045950 285 NVAHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQN 333 (405)
Q Consensus 285 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N 333 (405)
++..+ ++.....+|.++.+|+.+.+..+ ++.+.. .|.+|+.+++.+|
T Consensus 317 ~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 317 DIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred EeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 77654 44344556666777777777543 443332 4666777776665
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.48 E-value=1.1e-06 Score=84.57 Aligned_cols=198 Identities=13% Similarity=0.057 Sum_probs=122.5
Q ss_pred CccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccccccCCCCChhhhccc
Q 045950 105 PEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRFNQFEGDIPSAVFDLK 184 (405)
Q Consensus 105 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~i~~~~p~~~~~~~ 184 (405)
..+|.++++|+.+.+.++. .......|.++.+|+.+++..+ ++......|.++..|+.+.+..+... .....+....
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~ 231 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTG 231 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCC
Confidence 4567778888888886553 3244556777888888888765 44345566777777777766654432 1111111112
Q ss_pred cceeec-----------------------CCCCCCCCCCCCcCC-CCcchhhcccCCCCcCCchHHHhhcccCcEEEccC
Q 045950 185 LDALFI-----------------------NNNKFSSSLPKNIGN-SPVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLN 240 (405)
Q Consensus 185 L~~L~L-----------------------~~N~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~ 240 (405)
|+.+.+ ..+... .....+.. ..++.+....+.+. ...+.... +|+.+.+..
T Consensus 232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~-~L~~i~l~~ 306 (394)
T 4fs7_A 232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCS-SLTEVKLLD 306 (394)
T ss_dssp CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCT-TCCEEEECT
T ss_pred CceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccc-ccccccccc
Confidence 444443 333221 11111111 22333333332221 12344444 899999876
Q ss_pred CCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCC
Q 045950 241 TGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYN 313 (405)
Q Consensus 241 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 313 (405)
+ +.......|.++.+|+.++|..+ ++......|.++.+|+.+++..| ++..-..+|.++.+|+.+++..+
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 5 55555678999999999999754 66455678999999999999877 66556678999999999999765
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=2.7e-08 Score=85.61 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=25.9
Q ss_pred CCccEEEccCCCCCCC----CccccCCCCCCCEEEe--ecCcCccc----CchhhcCCCCCCEEEccCCcC
Q 045950 255 NQVTVFDVGFNNLVGP----LPESMGNMKSLEQLNV--AHNKLSGA----IPESICRLPKLENFTYSYNFF 315 (405)
Q Consensus 255 ~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l 315 (405)
++|++|+|++|.|.+. +...+...++|++|+| ++|.|.+. +.+.+...++|++|+|++|.+
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3444444444444421 2233334444555555 44544432 122233334455555544443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=1.6e-07 Score=85.21 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=17.8
Q ss_pred CCCCcEEECCCCcCCc--cCchhhhCCCCCcEEeccccccC
Q 045950 135 MRLLFELDVSTNQFSG--CFPSVVLCLPSLKFLDIRFNQFE 173 (405)
Q Consensus 135 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~i~ 173 (405)
+++|++|+|++|+|++ .++..+..+++|+.|+|++|+|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 4444444444444443 22233344444444454444444
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=7.3e-07 Score=80.84 Aligned_cols=95 Identities=18% Similarity=0.086 Sum_probs=68.9
Q ss_pred EECCCCCCc---ccCCccccCCCCCcEEeccCCCCCC--ccchhccCCCCCcEEECCCCcCCccCchhhhCCC--CCcEE
Q 045950 93 IDLNHANIA---GTLPEELGLLEDLALFHLNSNRFCG--TIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLP--SLKFL 165 (405)
Q Consensus 93 L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 165 (405)
++++.|... +.+.....++++|+.|+|++|+|++ .++..+..+++|++|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 667777533 2222223568899999999999997 4456778899999999999999964 3344444 99999
Q ss_pred eccccccCCCCCh-------hhhccc-cceee
Q 045950 166 DIRFNQFEGDIPS-------AVFDLK-LDALF 189 (405)
Q Consensus 166 ~Ls~N~i~~~~p~-------~~~~~~-L~~L~ 189 (405)
+|++|.+.+.+|. .+..++ |+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999999876662 234445 77775
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.24 E-value=4.1e-05 Score=73.04 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=45.9
Q ss_pred cEEEEECCCCCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEecc
Q 045950 89 TVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIR 168 (405)
Q Consensus 89 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 168 (405)
+++.+.+.. .++..-..+|.++.+|+.++|..+ ++.+-..+|.+. +|+.+.+..+ ++......|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 566666653 355555667888888888888644 554445566665 5666666543 44233344443 367777775
Q ss_pred cc
Q 045950 169 FN 170 (405)
Q Consensus 169 ~N 170 (405)
.+
T Consensus 122 ~~ 123 (379)
T 4h09_A 122 GA 123 (379)
T ss_dssp TT
T ss_pred Cc
Confidence 44
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=2.4e-06 Score=72.15 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=65.4
Q ss_pred CcEEEEECCCCCCcccCCccccCCCCCcEEeccCCC-CCCccchhccCC----CCCcEEECCCCc-CCccCchhhhCCCC
Q 045950 88 LTVAGIDLNHANIAGTLPEELGLLEDLALFHLNSNR-FCGTIPDSFRNM----RLLFELDVSTNQ-FSGCFPSVVLCLPS 161 (405)
Q Consensus 88 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 161 (405)
.+++.||++++.++..--..+..+++|+.|+|++|. |++.--..++.+ ++|++|+|++|. |+...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999998876655667888999999999985 776555556665 369999999874 87655566778889
Q ss_pred CcEEeccccc
Q 045950 162 LKFLDIRFNQ 171 (405)
Q Consensus 162 L~~L~Ls~N~ 171 (405)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999998875
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.90 E-value=0.00037 Score=66.32 Aligned_cols=126 Identities=10% Similarity=0.078 Sum_probs=87.3
Q ss_pred CcchhhcccCCCCcCCchHHHhhcccCcEEEccCCCCCCCCCccCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEe
Q 045950 207 PVSVLVLANNNLNSCIPSSLTKMAGTLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNNLVGPLPESMGNMKSLEQLNV 286 (405)
Q Consensus 207 ~L~~L~L~~n~l~~~~p~~l~~l~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 286 (405)
.++.+.+..+ +.......+.... .|+.+.+..+ +.......|.++.+|+.+.+..+ +.......|.++.+|+.+.+
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred ccceeeeccc-eeEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 3555554433 2222233445555 8889988765 55455677888999999998654 55344567889999999999
Q ss_pred ecCcCcccCchhhcCCCCCCEEEccCCcCCCCCC----CCCCCCcccCCCCCCCCC
Q 045950 287 AHNKLSGAIPESICRLPKLENFTYSYNFFCSEPL----TCLNLKDKDDRQNCIPNR 338 (405)
Q Consensus 287 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~L~~L~l~~N~l~~~ 338 (405)
.++.++..-...|.++.+|+.+++..+ ++.+.. .|.+|+.+.+..+ ++.+
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 999888556678889999999999755 554433 5778888888654 4443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=3.5e-06 Score=71.10 Aligned_cols=83 Identities=10% Similarity=0.032 Sum_probs=48.0
Q ss_pred cCcEEEccCCCCCCCCCccCCCCCCccEEEccCCC-CCCCCccccCCC----CCCCEEEeecC-cCcccCchhhcCCCCC
Q 045950 232 TLNEIILLNTGLTGCFPQDIGLLNQVTVFDVGFNN-LVGPLPESMGNM----KSLEQLNVAHN-KLSGAIPESICRLPKL 305 (405)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~L~~N-~l~~~~p~~l~~l~~L 305 (405)
.|++||++++.++..--..+..+++|++|+|++|. |++..-..+..+ ++|++|+|++| +|++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46666666665554433445566667777776663 554333334443 35677777766 3665544555666677
Q ss_pred CEEEccCCc
Q 045950 306 ENFTYSYNF 314 (405)
Q Consensus 306 ~~L~Ls~N~ 314 (405)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777776653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.43 E-value=4.4e-05 Score=65.57 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=48.2
Q ss_pred CcEEEEECCCC-CCccc----CCccccCCCCCcEEeccCCCCCCc----cchhccCCCCCcEEECCCCcCCccCc----h
Q 045950 88 LTVAGIDLNHA-NIAGT----LPEELGLLEDLALFHLNSNRFCGT----IPDSFRNMRLLFELDVSTNQFSGCFP----S 154 (405)
Q Consensus 88 ~~l~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p----~ 154 (405)
..++.|+|+++ +|... +.+.+..-+.|+.|+|++|.|... +...+..-+.|++|+|++|.|+.... +
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 35667777764 55432 344555666777777777776632 33344455667777777777764322 3
Q ss_pred hhhCCCCCcEEecccc
Q 045950 155 VVLCLPSLKFLDIRFN 170 (405)
Q Consensus 155 ~l~~l~~L~~L~Ls~N 170 (405)
.+..-..|++|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3444456777777654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=6.5e-05 Score=64.52 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=45.8
Q ss_pred cCcEEEccCC-CCCCC----CCccCCCCCCccEEEccCCCCCCC----CccccCCCCCCCEEEeecCcCccc----Cchh
Q 045950 232 TLNEIILLNT-GLTGC----FPQDIGLLNQVTVFDVGFNNLVGP----LPESMGNMKSLEQLNVAHNKLSGA----IPES 298 (405)
Q Consensus 232 ~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~ 298 (405)
.|++|+|++| +|... +...+..-+.|+.|+|++|+|.+. +.+.+..-+.|++|+|++|.|.+. +.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 5666666654 44321 223344556677777777776632 223334456677777777777643 2334
Q ss_pred hcCCCCCCEEEccCC
Q 045950 299 ICRLPKLENFTYSYN 313 (405)
Q Consensus 299 l~~l~~L~~L~Ls~N 313 (405)
+...+.|++|+|++|
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 455566777777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.95 E-value=0.0014 Score=52.34 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=30.2
Q ss_pred EEEccCCCCC-CCCccccCCCCCCCEEEeecCcCcccCchhhcCCCCCCEEEccCCcCC
Q 045950 259 VFDVGFNNLV-GPLPESMGNMKSLEQLNVAHNKLSGAIPESICRLPKLENFTYSYNFFC 316 (405)
Q Consensus 259 ~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 316 (405)
.++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23343321 34666666666666433444555666666666666554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.74 E-value=0.003 Score=50.33 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=25.8
Q ss_pred EEECCCCCCc-ccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCcC
Q 045950 92 GIDLNHANIA-GTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQF 148 (405)
Q Consensus 92 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 148 (405)
.++.++++++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3455555554 23343221 2455555555555543344444455555555555444
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.19 E-value=33 Score=25.13 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=18.4
Q ss_pred chhccCCCCCcEEECCCCcCCccCchhhhCCCCCcEEeccc
Q 045950 129 PDSFRNMRLLFELDVSTNQFSGCFPSVVLCLPSLKFLDIRF 169 (405)
Q Consensus 129 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 169 (405)
...|.++.+|+.+.+-.+ ++......|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344445555555554443 2223334455555555555543
No 166
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=38.04 E-value=24 Score=29.50 Aligned_cols=8 Identities=25% Similarity=-0.143 Sum_probs=3.5
Q ss_pred ccCCCCCC
Q 045950 328 KDDRQNCI 335 (405)
Q Consensus 328 L~l~~N~l 335 (405)
+|-.+|.|
T Consensus 153 fDW~gn~i 160 (227)
T 3ghp_A 153 FNWYGNRI 160 (227)
T ss_dssp EETTSCBC
T ss_pred EeccCcEe
Confidence 34444444
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.64 E-value=85 Score=22.81 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=36.6
Q ss_pred CCCcccCCccccCCCCCcEEeccCCCCCCccchhccCCCCCcEEECCCCc
Q 045950 98 ANIAGTLPEELGLLEDLALFHLNSNRFCGTIPDSFRNMRLLFELDVSTNQ 147 (405)
Q Consensus 98 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 147 (405)
..++..-..+|.++..|+.+.|-.+ ++.+-..+|.++.+|+.+.+....
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 3455555677889999999999765 444556789999999999987643
Done!