BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045952
         (569 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P53285|VPS62_YEAST Vacuolar protein sorting-associated protein 62 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=VPS62 PE=1
           SV=1
          Length = 467

 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 100/267 (37%), Gaps = 64/267 (23%)

Query: 353 HVK--PAV------GGTFTDIVMWVFCPFN-GPGTLKVGIMNVAFSKIGQHVGDWEHFTL 403
           H+K  PAV      G  + D   + F PFN GP  +  G         G HVGDWEH  +
Sbjct: 182 HIKKAPAVLFVVDKGNGWVDAFWFYFYPFNWGPYIMGSG-------PWGNHVGDWEHSLV 234

Query: 404 RICNFTGELWSIYFSQHSGGKWVAAYDLEYIEG----------------NKAIVYSSKNG 447
           R   + GE   ++ S H GG   +AY  E IE                  K +++S++  
Sbjct: 235 RF--YKGEPQYLWMSAHGGG---SAYKFEAIEKIKRLRRVDGKLTNEVIKKPLIFSARGT 289

Query: 448 HASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVV---AEPS-- 502
           HA +   G +        + + +   R  L+ D S+ Y       +GE +    AE +  
Sbjct: 290 HAHYASVGQHAHDVPFFFMPLSDFTDRGPLW-DPSLNYYAYTVT-VGEKMTPCGAEETKM 347

Query: 503 ---WLQFMRKWGP-----------------TIVYDSKTELDKIIKLLPLMIRYSVENAVS 542
              WL F   WG                    +   K  L K ++ + L  R+   N   
Sbjct: 348 GLEWLSFKGAWGDKQLRPRDPRQKWCPFQWKYIDGPKGPLFKNMERVSLCQRFKWWNFWK 407

Query: 543 KLPLELYGEEGPTGPKEKNNWVGDERG 569
             P   Y + G     EKN+ VGD  G
Sbjct: 408 GCPARRYIKRGEGLDAEKNDLVGDNCG 434


>sp|Q06466|TDA6_YEAST Putative vacuolar protein sorting-associated protein TDA6
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=TDA6 PE=2 SV=1
          Length = 467

 Score = 37.7 bits (86), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 106/300 (35%), Gaps = 70/300 (23%)

Query: 264 QIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDLVGEAIDPSGSNLPSGGRN 323
           +I + + N+ P V  + +E Y PS ++ +  N  +  K G+ +    + +  +L +    
Sbjct: 77  EIPSYVINHCPLVHLYSEEKYWPSDIAEYVQNFQIKDKNGNSISTHENLTLHDLKA---- 132

Query: 324 DGEFWIDLPSDGGRQIVKHGNM--------------------ESAKLYVHVKPAV----- 358
             E+ +DL  +     +    +                    E    Y    PA+     
Sbjct: 133 --EYHVDLFGNKTETHIPSSEVFLTSLDDFDKDPKWLLGHLPEYGTGYNSKAPAILIVVD 190

Query: 359 -GGTFTDIVMWVFCPFN-GPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICN-FTGELWSI 415
            G  + D   + F PFN GP  +  G         G HVGDWEH  +R        LW  
Sbjct: 191 KGNGWVDAFWFFFYPFNHGPFIMGHG-------PWGNHVGDWEHSLVRFYKGIPKYLWMS 243

Query: 416 YFSQHSGGKWVAAYDLEYIEGNKA--------------IVYSSKNGHASFPHPGTYLQGS 461
             S  +G ++ A    + +   K               +++S++  HA++   G +    
Sbjct: 244 AHSSGTGYRYEAVEKFKKLRKRKQQDSDDGGDTILERPLIFSARGTHANYASAGQHAHDI 303

Query: 462 EILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVVAEPS----------WLQFMRKWG 511
               + + +   R  L+ D S+ +      Y  +G    PS          WL F   WG
Sbjct: 304 PFFFMPLSDFTDRGPLW-DPSLNF----YSYTFDGKTVTPSSEREESLGLDWLHFQGGWG 358


>sp|Q7ZWN0|LMF2_XENLA Lipase maturation factor 2 OS=Xenopus laevis GN=lmf2 PE=2 SV=1
          Length = 707

 Score = 35.0 bits (79), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 411 ELWSIYFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFP---HPGTYLQGSE 462
           ++W    S HS   W A++    ++GNK +++  +N  + +P   +P TY++  +
Sbjct: 501 QMWFAALSHHSHSPWFASFVYRLLQGNKDVIHLVQNDESLYPFHANPPTYIRAQQ 555


>sp|C6E2B1|AROA_GEOSM 3-phosphoshikimate 1-carboxyvinyltransferase OS=Geobacter sp.
           (strain M21) GN=aroA PE=3 SV=1
          Length = 429

 Score = 33.9 bits (76), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 416 YFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARS 475
           +FS  SG K++ A  ++ + G  A++ +  +G A        +QGS++  IG+  D+  S
Sbjct: 109 FFSVLSGDKYLRARPMKRVVGPLALMGARISGRAGGEKAPLAIQGSKL--IGIEYDSPVS 166

Query: 476 NLYVDSSIQYELVAAEYL-GEGVVAEP 501
           +  V S+I   ++A  Y  GE VV EP
Sbjct: 167 SAQVKSAI---MLAGLYAGGETVVREP 190


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.139    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 249,742,111
Number of Sequences: 539616
Number of extensions: 11719179
Number of successful extensions: 20377
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20374
Number of HSP's gapped (non-prelim): 4
length of query: 569
length of database: 191,569,459
effective HSP length: 123
effective length of query: 446
effective length of database: 125,196,691
effective search space: 55837724186
effective search space used: 55837724186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)