Query 045952
Match_columns 569
No_of_seqs 301 out of 381
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:14:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06101 DUF946: Plant protein 100.0 1E-168 2E-173 1360.8 51.7 532 19-567 1-535 (535)
2 PF06101 DUF946: Plant protein 98.9 5.1E-09 1.1E-13 115.8 10.6 144 16-186 49-217 (535)
3 PF05630 NPP1: Necrosis induci 96.1 0.015 3.3E-07 58.0 7.1 89 343-443 49-137 (206)
4 PF01705 CX: CX module; Inter 11.8 1.7E+02 0.0036 23.7 2.0 25 396-422 24-49 (61)
5 PF15584 Imm44: Immunity prote 11.1 2.2E+02 0.0047 25.4 2.5 15 127-141 65-79 (94)
6 PF03351 DOMON: DOMON domain; 10.2 5.6E+02 0.012 22.3 5.0 51 132-187 4-54 (124)
7 PF06424 PRP1_N: PRP1 splicing 9.5 1.2E+02 0.0026 28.7 0.4 7 158-164 1-7 (133)
8 PF07299 FBP: Fibronectin-bind 9.4 3.6E+02 0.0077 27.4 3.8 46 209-270 160-205 (208)
9 COG5508 Uncharacterized conser 8.7 1.2E+02 0.0027 26.3 0.2 8 394-401 71-78 (84)
10 COG3657 Uncharacterized protei 8.5 2.7E+02 0.0059 25.0 2.2 31 387-422 36-70 (100)
No 1
>PF06101 DUF946: Plant protein of unknown function (DUF946); InterPro: IPR009291 This family consists of several hypothetical proteins, which includes vacuolar protein sorting protein 62. The function of this family is unknown.
Probab=100.00 E-value=1.1e-168 Score=1360.80 Aligned_cols=532 Identities=59% Similarity=1.101 Sum_probs=508.0
Q ss_pred CCCCccCCCCCCCCCCCCCcceeeeecCCeeEEEeccceEeeeccCCCCCCcceEEeeecCCCCceEEeccccccCCCCC
Q 045952 19 EPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPL 98 (569)
Q Consensus 19 ~~~~f~~p~p~p~~p~g~~fa~g~i~lg~L~V~~~t~FerVW~~~~~~~~~~~~SfWrP~~~P~Gf~~LGdy~~~~~~P~ 98 (569)
+|++|+||+|||+||||+|||+|+|+||+|+|+++++|+|||++.+++++++++|||||+++|+||++||||||+|++|+
T Consensus 1 ~~~~f~~p~~~~~~p~g~~fa~g~I~lG~L~V~~~s~F~rVW~~~~g~~~~~~vSfwRP~~vP~Gf~~LGdyaqpn~~P~ 80 (535)
T PF06101_consen 1 IPTPFSLPAPLPSWPQGGGFASGRIDLGELEVAQVSTFERVWWDKGGGGSRKGVSFWRPVGVPPGFVILGDYAQPNNKPP 80 (535)
T ss_pred CCccccCCCCCCCCCCCCCceeeeEecCCEEEEEeccceEEEECCCCCCCCCceEEeccCCCCCCceEEeeEeCCCCCCC
Confidence 58999999999999999999999999999999999999999988777788899999999988999999999999999999
Q ss_pred CceEEEEecCcccccccccccCCCCCCCccCCCCceEEeecCCCCCCCCccceEEEeecCCCCceecceEEeCCCCCCCC
Q 045952 99 RGFVLVARDLASSEAEGAHTSNLFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPEL 178 (569)
Q Consensus 99 ~~~Vlv~rd~~~~~~~~~~~~~~~~~~~l~~P~~f~lVW~~~~sg~~~~~~~~s~W~PvpP~GYvALG~VvT~~~~kP~l 178 (569)
+++|||+++.+.. .+.++|++|++|+|||++++++.++.+.++|||+|+||+||+|||||||++++||++
T Consensus 81 ~G~VLva~d~~~~----------~~~p~l~~Pv~f~lVW~~~~~~~~~~~~~~sfW~PvaP~GYvALG~Vvt~~~~~P~l 150 (535)
T PF06101_consen 81 NGFVLVARDVSGS----------PSNPALAKPVDFTLVWSDSGSGGKQDSEDVSFWLPVAPPGYVALGCVVTTGPEKPSL 150 (535)
T ss_pred cceEEEEecCCcc----------cCCcccCCCCcceEEEecCCCCcccCCccEEEEecCCCCCceEEEEEEeCCCCCCCC
Confidence 9999999986632 257899999999999999987765333479999999999999999999999999999
Q ss_pred CeEEEeccccCccccccceeeecCCCCCCCCeEEEccCCCCCCCCCCceeeeeEEeecCCCCCccchhhhhcccCCCCCC
Q 045952 179 DEVRCVRDDLTDKCEVHHLIFDAISKFSSSPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHA 258 (569)
Q Consensus 179 ~~vrCVR~DLt~~~~~~~~iW~~~~sg~~~~~siW~v~p~~rg~~~~gv~~GTF~~~~~~~~~~~~~~~clkn~~~~~~~ 258 (569)
++|||||+|||++|+.+++||++.+ |+||++||++|||+++||++|||||+++..+++.+.|+||||++++|++
T Consensus 151 d~vrCVR~DLv~~~~~~~~Iw~~~~------f~vw~vrP~~rG~~~~Gv~vGTF~~~~~~~~~~~~~i~cLkn~~~~l~~ 224 (535)
T PF06101_consen 151 DSVRCVRSDLVDQCEFSESIWDSSS------FSVWSVRPCDRGMWAKGVSVGTFFCQSGWSSSEPPPIACLKNLDSSLSA 224 (535)
T ss_pred ceEEEEchHhcccccccceEEccCC------eEEEecCcccceeecCCCceeeEEeecCCCCCcccChhHhhcCCccccc
Confidence 9999999999999999999997533 9999999999999999999999999999977678999999999999999
Q ss_pred CCChhhHHHHHHHhCCeEEecCCCccCCCCHHHHHhcCceeeccCCCC-CcccCCCCCCCCCCCCCCCceeeeCCCCCC-
Q 045952 259 MPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDLV-GEAIDPSGSNLPSGGRNDGEFWIDLPSDGG- 336 (569)
Q Consensus 259 ~P~~~~i~~lv~~yAP~v~Lhs~E~y~Pssv~~f~~n~~l~~~~~~~~-g~~~~~~~snLp~~~~nd~~~wldlp~~~~- 336 (569)
||+++||++||++|||+|||||||+|+||||+|||+|++++|++++.. +++++.+++|||++++||+.||||+|.+..
T Consensus 225 mp~~~qi~~li~~YaP~vylhpeE~YlPssV~~Ff~Ng~l~~~~g~~~~~~~i~~~gsnLp~~~~nd~~~~ldl~~~~~~ 304 (535)
T PF06101_consen 225 MPNLDQIHALIQKYAPLVYLHPEERYLPSSVEWFFENGALLYKKGNESNPKPIDPNGSNLPQGGTNDGDYWLDLPDDDKN 304 (535)
T ss_pred CCchHHHHHHHHhhCceEEecCccccCCccHHHHhhCceEEEcCCCccCCeecccccccCCCCCCCCccccccCcccccc
Confidence 999999999999999999999999999999999999999999999875 789999999999999999999999999876
Q ss_pred CcccccCcccCcceEEEEEeccCCcEEEEEEEEeccCCCCCcceeeeeeccccccccccccceeeEEEEeCCCCcEeEEE
Q 045952 337 RQIVKHGNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIY 416 (569)
Q Consensus 337 ~~~~~~G~~~~a~~y~~vkp~~g~~~~di~yw~FY~fN~~~~~~~G~~~~~~~~~G~HvGDWEh~tvr~~n~~g~p~~v~ 416 (569)
+..+++|++++|++|+||||++|+++|||+||+|||||+++++|+|+++|+++++|+|||||||+||||+|++|+|++||
T Consensus 305 ~~~vk~G~l~~a~~yv~Vkp~~Ggt~tDi~~w~FypfNg~~~~~vg~~~~~~~~~G~HvGDWEH~tvR~~n~~g~~~~v~ 384 (535)
T PF06101_consen 305 KESVKKGNLESAPAYVHVKPDKGGTFTDIFYWYFYPFNGPARLKVGPINIPLGKFGNHVGDWEHVTVRFSNFDGEPQAVY 384 (535)
T ss_pred ccccccCCcCCCcEEEEEEEcCCCcEEEEEEEEEecCCCCcccccceeeecccccccccccceeEEEEEECCCCcEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCceeecccceee-eCCeeEEEEcCCCCCCCCCCccccCCCcccCccccccccCCCccccCCCceEEEEEeecCC
Q 045952 417 FSQHSGGKWVAAYDLEYI-EGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGE 495 (569)
Q Consensus 417 ~S~H~~G~~~~~~~le~~-~g~rPvvYsa~gsHa~y~~~G~~~~~~~~l~~g~~~dt~~~~~~wD~~~~~~~~~~~~~~~ 495 (569)
||||++|+||+++++|+. .++|||||||+|||||||+||+|+|++.+|++||++|+++++.+||++++|++++++|+++
T Consensus 385 ~S~H~~G~~~~~~~le~~~~~~rPvvYsa~g~Ha~y~~~G~~~~g~~~l~~gi~~D~~~~~~~~D~~~~y~~v~~~y~~~ 464 (535)
T PF06101_consen 385 FSQHSGGQWYDYSDLEFIQDGNRPVVYSARGSHANYPSPGTHLQGSPKLGIGIRNDTTDSGPLWDSSLNYEVVAAEYLGS 464 (535)
T ss_pred eeecCCCceechhhhccccCCCceEEEecCCcccCCCCCcccccCccccCccceecccCCcceEcCCcceEEEeccccCC
Confidence 999999999999999984 5999999999999999999999999998899999999999999999999999999999998
Q ss_pred ccccCccccccccccCCcccCCChhHHHHHHhhcchhHHHhHHHhhhcCCcccccccCCCCccccCCCcCCC
Q 045952 496 GVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPLELYGEEGPTGPKEKNNWVGDE 567 (569)
Q Consensus 496 ~~~~~~~Wl~f~G~WG~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~e~~~~~GPtGP~~K~~w~~de 567 (569)
.+. +|+||+|+|+|||+++|+++.|+++++++||++||.+|++|+++||+|+++||||||||+|+||+|||
T Consensus 465 ~~~-ep~WL~y~g~WG~~i~y~~~~e~~~~~~~lp~~~~~~~~~~~~~~p~e~~~eegptgpk~k~~w~gde 535 (535)
T PF06101_consen 465 GVV-EPPWLNYMGRWGPKIVYDSRSEIDKVEKFLPGKLRFSFENIFNKLPNELYGEEGPTGPKEKNNWEGDE 535 (535)
T ss_pred CCc-CcchhhcccccCCcccCchHHHHHHHHHhChHHHHHHHHHHHHhCcHHhccCCCCCCcccccCCCCCC
Confidence 665 89999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF06101 DUF946: Plant protein of unknown function (DUF946); InterPro: IPR009291 This family consists of several hypothetical proteins, which includes vacuolar protein sorting protein 62. The function of this family is unknown.
Probab=98.91 E-value=5.1e-09 Score=115.77 Aligned_cols=144 Identities=20% Similarity=0.369 Sum_probs=94.1
Q ss_pred CCCCCCCccCCCCCCC-C-CCCC----------CcceeeeecC----CeeEEEeccceEeeeccCCCCCC--cceEEeee
Q 045952 16 SPTEPGTFSLPAPLPT-W-PQGQ----------GFASGRINLG----EIEVCRISRFNFIWSCNLLQSKK--KSATFYEP 77 (569)
Q Consensus 16 ~~~~~~~f~~p~p~p~-~-p~g~----------~fa~g~i~lg----~L~V~~~t~FerVW~~~~~~~~~--~~~SfWrP 77 (569)
......+|++|.++|+ | .+|+ |+.--.-+.. .-.+++..+|++||++...+... ..++||+|
T Consensus 49 ~~~~~vSfwRP~~vP~Gf~~LGdyaqpn~~P~~G~VLva~d~~~~~~~p~l~~Pv~f~lVW~~~~~~~~~~~~~~sfW~P 128 (535)
T PF06101_consen 49 GSRKGVSFWRPVGVPPGFVILGDYAQPNNKPPNGFVLVARDVSGSPSNPALAKPVDFTLVWSDSGSGGKQDSEDVSFWLP 128 (535)
T ss_pred CCCCceEEeccCCCCCCceEEeeEeCCCCCCCcceEEEEecCCcccCCcccCCCCcceEEEecCCCCcccCCccEEEEec
Confidence 3456678999998775 2 2221 2211111111 12367789999999876544332 37999999
Q ss_pred cCCCCceEEeccccccCCC-CCCceEEEEecCcccccccccccCCCCCCCccCCCCceEEeecCCCCCCCCccceEEEee
Q 045952 78 AGIPDGFYSLGHYCQFDSR-PLRGFVLVARDLASSEAEGAHTSNLFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLP 156 (569)
Q Consensus 78 ~~~P~Gf~~LGdy~~~~~~-P~~~~Vlv~rd~~~~~~~~~~~~~~~~~~~l~~P~~f~lVW~~~~sg~~~~~~~~s~W~P 156 (569)
+ +|+||++||++++.+.. |+...|.|+|.+. +....-.+.||.+. .+++|.-
T Consensus 129 v-aP~GYvALG~Vvt~~~~~P~ld~vrCVR~DL-----------------v~~~~~~~~Iw~~~---------~f~vw~v 181 (535)
T PF06101_consen 129 V-APPGYVALGCVVTTGPEKPSLDSVRCVRSDL-----------------VDQCEFSESIWDSS---------SFSVWSV 181 (535)
T ss_pred C-CCCCceEEEEEEeCCCCCCCCceEEEEchHh-----------------cccccccceEEccC---------CeEEEec
Confidence 9 99999999999988765 6778899999643 22333468899753 2789966
Q ss_pred cCCC-Cc----eecceEEeCC-CCCCCCCeEEEecc
Q 045952 157 QPPD-GY----KSMGFLVTKT-PNKPELDEVRCVRD 186 (569)
Q Consensus 157 vpP~-GY----vALG~VvT~~-~~kP~l~~vrCVR~ 186 (569)
.|-. |. |++|.++..+ ...+....+.|+++
T Consensus 182 rP~~rG~~~~Gv~vGTF~~~~~~~~~~~~~i~cLkn 217 (535)
T PF06101_consen 182 RPCDRGMWAKGVSVGTFFCQSGWSSSEPPPIACLKN 217 (535)
T ss_pred CcccceeecCCCceeeEEeecCCCCCcccChhHhhc
Confidence 6653 43 6666666443 33555667788877
No 3
>PF05630 NPP1: Necrosis inducing protein (NPP1); InterPro: IPR008701 This family consists of several NPP1-like necrosis inducing proteins from oomycetes, fungi and bacteria. Infiltration of NPP1 into leaves of Arabidopsis thaliana plants result in transcript accumulation of pathogenesis-related (PR) genes, production of ROS and ethylene, callose apposition, and HR-like cell death [].; PDB: 3ST1_A 3GNZ_P 3GNU_P.
Probab=96.10 E-value=0.015 Score=58.02 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=55.6
Q ss_pred CcccCcceEEEEEeccCCcEEEEEEEEeccCCCCCcceeeeeeccccccccccccceeeEEEEeCCCCcEeEEEEeecCC
Q 045952 343 GNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSG 422 (569)
Q Consensus 343 G~~~~a~~y~~vkp~~g~~~~di~yw~FY~fN~~~~~~~G~~~~~~~~~G~HvGDWEh~tvr~~n~~g~p~~v~~S~H~~ 422 (569)
+.|..+.+|+..+-.. +..-|.|.+|||=+.+.. |. ..+.|-=||||+.|-+.|..+++.+|-+|+|.+
T Consensus 49 ~~L~gsqVY~R~~~~~--~~~aimYawYfpKd~~~~---~~------~~~GHRHDWE~vVVWidn~~~~i~~Vs~S~hg~ 117 (206)
T PF05630_consen 49 SRLDGSQVYSRSRCYN--GWCAIMYAWYFPKDQPSP---GS------GDGGHRHDWENVVVWIDNNPSTILGVSASAHGG 117 (206)
T ss_dssp GG-----EEEEEEEET--TEEEEEEEEEEEEEEECT-----------T-EEEEEEEEEEEEEECTTT--EEEEEEEETTE
T ss_pred ccccccceeeEEEEEC--CEEEEEEEEECCCCCccc---cc------cCCCcccceeEEEEEEcCCCCceEEEEeeecCC
Confidence 3455678898776443 467789988888776432 11 246788899999999977346999999999976
Q ss_pred CceeecccceeeeCCeeEEEE
Q 045952 423 GKWVAAYDLEYIEGNKAIVYS 443 (569)
Q Consensus 423 G~~~~~~~le~~~g~rPvvYs 443 (569)
-......+.. .+|+||.|-.
T Consensus 118 y~~~~~~~~~-~~Gt~pk~~Y 137 (206)
T PF05630_consen 118 YYKRPPDSIR-FDGTHPKVVY 137 (206)
T ss_dssp EEEES--GGG-EETTEEEEEE
T ss_pred ceEecCcccc-ccCCCeeEEE
Confidence 3333233444 6788986644
No 4
>PF01705 CX: CX module; InterPro: IPR002619 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=11.76 E-value=1.7e+02 Score=23.69 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=21.6
Q ss_pred ccceeeEEEEeCCCC-cEeEEEEeecCC
Q 045952 396 GDWEHFTLRICNFTG-ELWSIYFSQHSG 422 (569)
Q Consensus 396 GDWEh~tvr~~n~~g-~p~~v~~S~H~~ 422 (569)
-|||--.|+|.| | +|++|+|.=|..
T Consensus 24 ~d~el~~v~F~n--Gt~p~si~fgC~~~ 49 (61)
T PF01705_consen 24 DDWELGNVTFPN--GTRPKSIFFGCPSY 49 (61)
T ss_pred CCccccceEccC--CCcceeEEEeCCCC
Confidence 699999999977 7 699999988865
No 5
>PF15584 Imm44: Immunity protein 44
Probab=11.06 E-value=2.2e+02 Score=25.39 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=12.6
Q ss_pred ccCCCCceEEeecCC
Q 045952 127 LQKPLDYTLVWCSDE 141 (569)
Q Consensus 127 l~~P~~f~lVW~~~~ 141 (569)
.-.++.|+|||.|+.
T Consensus 65 ~~~~t~WRLiWeD~R 79 (94)
T PF15584_consen 65 DEVDTRWRLIWEDKR 79 (94)
T ss_pred CccceEEEEEEeccc
Confidence 457999999999974
No 6
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=10.20 E-value=5.6e+02 Score=22.29 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=34.1
Q ss_pred CceEEeecCCCCCCCCccceEEEeecCCCCceecceEEeCCCCCCCCCeEEEeccc
Q 045952 132 DYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPELDEVRCVRDD 187 (569)
Q Consensus 132 ~f~lVW~~~~sg~~~~~~~~s~W~PvpP~GYvALG~VvT~~~~kP~l~~vrCVR~D 187 (569)
.|.+=|.-...+.. -...+.-|..-.||+|||. +....+-..|.|.|...+
T Consensus 4 ~~~l~w~~~~~~~~---i~~~l~~~~~~~~w~aiGf--s~~~~M~~~Dvv~~~~~~ 54 (124)
T PF03351_consen 4 NFSLSWTVDGDNNT---IEFELTGPANTNGWVAIGF--SDDGGMGGSDVVVCWVDD 54 (124)
T ss_pred eEEEEEEEECCCCE---EEEEEEeccCCCCEEEEEE--ccccCCCCCcEEEEEEcC
Confidence 46667776543321 2345555555589999997 344557788999998886
No 7
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=9.50 E-value=1.2e+02 Score=28.67 Aligned_cols=7 Identities=57% Similarity=1.345 Sum_probs=5.4
Q ss_pred CCCCcee
Q 045952 158 PPDGYKS 164 (569)
Q Consensus 158 pP~GYvA 164 (569)
||+||||
T Consensus 1 pPpgYVa 7 (133)
T PF06424_consen 1 PPPGYVA 7 (133)
T ss_pred CCCCcCC
Confidence 6888885
No 8
>PF07299 FBP: Fibronectin-binding protein (FBP); InterPro: IPR010841 This entry consists of several bacterial fibronectin-binding proteins which are thought to be involved in virulence in Listeria species [,].; PDB: 4ADO_B 4ADN_B 2YB5_F.
Probab=9.42 E-value=3.6e+02 Score=27.35 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=29.0
Q ss_pred CeEEEccCCCCCCCCCCceeeeeEEeecCCCCCccchhhhhcccCCCCCCCCChhhHHHHHH
Q 045952 209 PFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHAMPNCDQIHALIR 270 (569)
Q Consensus 209 ~~siW~v~p~~rg~~~~gv~~GTF~~~~~~~~~~~~~~~clkn~~~~~~~~P~~~~i~~lv~ 270 (569)
.++++.+.-. ++..+.+-++||++|.- +..|.+|+. +.+.++.++.
T Consensus 160 ~VsLf~a~~k-g~a~~~y~svG~YIC~D--------s~~CN~~it-------~~~~L~~Fi~ 205 (208)
T PF07299_consen 160 EVSLFTAKTK-GSAGGTYNSVGNYICSD--------SEQCNQNIT-------DLEKLEDFIE 205 (208)
T ss_dssp EEEEEEEEES--TTTS--EEEEEEEESS--------HHHHHHH----------HHHHHHHHH
T ss_pred cEEEEEEecc-CCCCCCCccceEEEeCC--------HHHHHhhcC-------CHHHHHHHHH
Confidence 5777776554 33456788999999984 668998875 4566666654
No 9
>COG5508 Uncharacterized conserved small protein [Function unknown]
Probab=8.66 E-value=1.2e+02 Score=26.29 Aligned_cols=8 Identities=63% Similarity=1.302 Sum_probs=6.3
Q ss_pred ccccceee
Q 045952 394 HVGDWEHF 401 (569)
Q Consensus 394 HvGDWEh~ 401 (569)
-.|||||=
T Consensus 71 RyGDWe~K 78 (84)
T COG5508 71 RYGDWEHK 78 (84)
T ss_pred cccccccc
Confidence 56899984
No 10
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=8.55 E-value=2.7e+02 Score=25.00 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=23.1
Q ss_pred ccccccccc----ccceeeEEEEeCCCCcEeEEEEeecCC
Q 045952 387 AFSKIGQHV----GDWEHFTLRICNFTGELWSIYFSQHSG 422 (569)
Q Consensus 387 ~~~~~G~Hv----GDWEh~tvr~~n~~g~p~~v~~S~H~~ 422 (569)
.+|.+|+|- |=|| +|+.- |-=..|||+||+.
T Consensus 36 ~~GN~GD~kpvgeGV~E---LRId~--GpGyRvY~~~~g~ 70 (100)
T COG3657 36 ALGNFGDVKPVGEGVSE---LRIDH--GPGYRVYFQQRGL 70 (100)
T ss_pred hcCCCcCccccccchhh---heecc--CCceEEEEEecCc
Confidence 467888873 4465 78854 8889999999974
Done!