Query 045952
Match_columns 569
No_of_seqs 301 out of 381
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3st1_A Necrosis-and ethylene-i 93.4 0.15 5.1E-06 49.9 7.1 84 348-445 68-152 (214)
2 3gnz_P 25 kDa protein elicitor 93.0 0.39 1.3E-05 47.0 9.4 83 348-444 69-153 (213)
3 2yb5_A FUSC, putative fusidic 18.9 90 0.0031 30.3 4.0 49 208-271 165-213 (215)
4 1jmt_B Splicing factor U2AF 65 7.6 94 0.0032 20.8 0.2 9 156-164 9-17 (28)
5 4adn_A FAR1; antibiotic resist 7.3 4.6E+02 0.016 25.5 4.9 47 209-271 174-220 (222)
6 3nsw_A Excretory-secretory pro 6.8 1.6E+02 0.0056 24.3 1.2 33 25-60 48-81 (106)
7 2lh0_A Histone chaperone RTT10 6.1 2.3E+02 0.0077 22.9 1.7 23 525-547 8-30 (70)
8 3qds_A Boletus edulis lectin; 5.6 4.5E+02 0.015 23.9 3.5 27 401-427 53-79 (143)
9 2yka_B ORF57 protein, 52 kDa i 7.4 1.4E+02 0.0047 19.3 0.0 13 553-565 1-13 (26)
10 2idl_A Hypothetical protein; c 4.9 5.3E+02 0.018 22.0 3.5 14 532-545 93-106 (117)
No 1
>3st1_A Necrosis-and ethylene-inducing protein; mpnep2, NLP family, unknown function, toxin; 1.80A {Moniliophthora perniciosa}
Probab=93.36 E-value=0.15 Score=49.93 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=52.8
Q ss_pred cceEEEEEeccCCcEEEEEEEEeccCCCCCcceeeeeeccccccccccccceeeEEEEeCCCCcEeEEEEeecCCCceee
Q 045952 348 AKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVA 427 (569)
Q Consensus 348 a~~y~~vkp~~g~~~~di~yw~FY~fN~~~~~~~G~~~~~~~~~G~HvGDWEh~tvr~~n~~g~p~~v~~S~H~~G~~~~ 427 (569)
..+|+..+=. . ++.-|.|=+|||=..+. ... -|-=||||+-|-+.|.+.++.+|-+|+|++=.-+.
T Consensus 68 sqvY~R~~~~-~-g~~aimYawYFpKD~~~-----------~g~-GHRHDWE~vVVWidn~~~~i~~vs~S~hg~y~~~~ 133 (214)
T 3st1_A 68 AQTYVRSATF-Q-GKTALVYAWYMPKDEIS-----------TGI-GHRHDWEGAVVFLNSDTQQIDGVAASAHGKWRKYP 133 (214)
T ss_dssp CCEEEEEEEE-T-TEEEEEEEEEEEEEEEE-----------TTE-EEEEEEEEEEEEEETTTCCEEEEEEEETTEEEEEE
T ss_pred CCcEeEEEEe-C-CEEEEEEEEeccCCccC-----------CCC-CccccceEEEEEEcCCCCeEEEEEeeccCCccccC
Confidence 4678776532 3 34455565566544321 122 47779999999999866788999999996522222
Q ss_pred cccceeeeCCeeEE-EEcC
Q 045952 428 AYDLEYIEGNKAIV-YSSK 445 (569)
Q Consensus 428 ~~~le~~~g~rPvv-Ysa~ 445 (569)
..+..+.+|+||.| |-..
T Consensus 134 ~~~~~~~~Gt~~kv~Y~~~ 152 (214)
T 3st1_A 134 NPGGANIDDTHVKLQYSAE 152 (214)
T ss_dssp SCCGGGEETTEEEEEEEEE
T ss_pred CCccccccCCeeEEEEEec
Confidence 22333367899865 6543
No 2
>3gnz_P 25 kDa protein elicitor; toxin, necrosi, ethyleneinducing, immunityassociated responses, plants; 1.35A {Pythium aphanidermatum} PDB: 3gnu_P
Probab=92.97 E-value=0.39 Score=46.97 Aligned_cols=83 Identities=28% Similarity=0.424 Sum_probs=52.7
Q ss_pred cceEEEEEeccCCcEEEEEEEEeccCCCCCcceeeeeeccccccccccccceeeEEEEeCC-CCcEeEEEEeecCCCcee
Q 045952 348 AKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNF-TGELWSIYFSQHSGGKWV 426 (569)
Q Consensus 348 a~~y~~vkp~~g~~~~di~yw~FY~fN~~~~~~~G~~~~~~~~~G~HvGDWEh~tvr~~n~-~g~p~~v~~S~H~~G~~~ 426 (569)
..+|+..+=. + +..-|.|=+||+=..+.. .+ -|-=||||+-|-+.|. +.++.+|-+|+|++=...
T Consensus 69 ~qvY~R~~~~-~-g~~aimYawYFpKD~~~~-----------g~-GHRHDWE~vVVWidnp~~~~i~~vs~S~hg~y~~~ 134 (213)
T 3gnz_P 69 AQVYSRSGTY-N-GYYAIMYSWYMPKDSPST-----------GI-GHRHDWENVVVWLDNAASANIVALSASAHSGYKKS 134 (213)
T ss_dssp CCEEEEEEEE-T-TEEEEEEEEEEEEECCSS-----------SC-CEEEEEEEEEEEESCTTTCCEEEEEEEETTEEEEE
T ss_pred CCceeEEEEc-C-CEEEEEEEEeccCCccCC-----------CC-CccccceEEEEEecCCCCceeEEEEeeccCCcccc
Confidence 3678776533 2 345666666776655321 22 4777999999999873 457899999999752222
Q ss_pred ecccceeeeCCeeEE-EEc
Q 045952 427 AAYDLEYIEGNKAIV-YSS 444 (569)
Q Consensus 427 ~~~~le~~~g~rPvv-Ysa 444 (569)
...+..+.+|+||.| |-.
T Consensus 135 ~~~~~~~~~Gt~~kv~Y~~ 153 (213)
T 3gnz_P 135 FPADKSYLDGITAKISYKS 153 (213)
T ss_dssp SSCCGGGEETTEEEEEEEC
T ss_pred CCCccceecCCceEEEEEe
Confidence 222223357999865 743
No 3
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=18.92 E-value=90 Score=30.35 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=31.2
Q ss_pred CCeEEEccCCCCCCCCCCceeeeeEEeecCCCCCccchhhhhcccCCCCCCCCChhhHHHHHHH
Q 045952 208 SPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHAMPNCDQIHALIRN 271 (569)
Q Consensus 208 ~~~siW~v~p~~rg~~~~gv~~GTF~~~~~~~~~~~~~~~clkn~~~~~~~~P~~~~i~~lv~~ 271 (569)
..++++..+-...|..+.+-++||++|.- ..+|..|+. +.+++++++.+
T Consensus 165 ~~VsLf~a~~~g~g~~g~y~tvG~YIC~D--------~~~Cn~~i~-------~~~~L~~Fi~~ 213 (215)
T 2yb5_A 165 SDTSLFLNKTKHNKSSGTYTKKGDYICYD--------SFKCNQNLD-------DINNLYEFIVK 213 (215)
T ss_dssp EEEEEEEECC--------CCCEEEEEESS--------HHHHHHHCC-------CHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCCCCCCCceEEEEeCC--------HHHHHHHhc-------CHHHHHHHHHh
Confidence 36888887665445566678999999982 449988775 56777777764
No 4
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=7.64 E-value=94 Score=20.82 Aligned_cols=9 Identities=33% Similarity=0.925 Sum_probs=6.6
Q ss_pred ecCCCCcee
Q 045952 156 PQPPDGYKS 164 (569)
Q Consensus 156 PvpP~GYvA 164 (569)
=|||+||..
T Consensus 9 DvpP~GyE~ 17 (28)
T 1jmt_B 9 DVPPPGFEH 17 (28)
T ss_dssp TCCCTTCTT
T ss_pred CCCCCCccc
Confidence 478888864
No 5
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=7.27 E-value=4.6e+02 Score=25.49 Aligned_cols=47 Identities=23% Similarity=0.449 Sum_probs=32.3
Q ss_pred CeEEEccCCCCCCCCCCceeeeeEEeecCCCCCccchhhhhcccCCCCCCCCChhhHHHHHHH
Q 045952 209 PFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHAMPNCDQIHALIRN 271 (569)
Q Consensus 209 ~~siW~v~p~~rg~~~~gv~~GTF~~~~~~~~~~~~~~~clkn~~~~~~~~P~~~~i~~lv~~ 271 (569)
.++++..+-.. ...+.|-.+||.+|.- +.+|..|+. +.+.++++|.+
T Consensus 174 ~VsLf~a~~ag-~a~~~y~tvG~YIC~D--------s~~Cn~~i~-------~~~~L~~Fi~~ 220 (222)
T 4adn_A 174 NVSLFMKKSKT-NSDGQYVKKGDYICRD--------SIHCNKQLT-------DINQFYNFIDK 220 (222)
T ss_dssp EEEEEEEECCC-CTTSCCCEEEEEEESS--------HHHHHHHCC-------CHHHHHHHHHH
T ss_pred cEEEEEEecCC-CCCCCccccEEEEcCC--------HHHHhhhcC-------CHHHHHHHHHh
Confidence 57777665322 2345578999999983 568998875 55777777653
No 6
>3nsw_A Excretory-secretory protein 2; hookworm, excretory-secretory protei merohedral twinning, immunomodulator, netrin domain, immune; HET: EPE; 1.75A {Ancylostoma ceylanicum}
Probab=6.77 E-value=1.6e+02 Score=24.26 Aligned_cols=33 Identities=24% Similarity=0.550 Sum_probs=23.5
Q ss_pred CCCCCC-CCCCCCCcceeeeecCCeeEEEeccceEee
Q 045952 25 LPAPLP-TWPQGQGFASGRINLGEIEVCRISRFNFIW 60 (569)
Q Consensus 25 ~p~p~p-~~p~g~~fa~g~i~lg~L~V~~~t~FerVW 60 (569)
.|...| +||. |.+=|-+-|.+.+..-+++..-.
T Consensus 48 vpktapsqwps---fgtlrddcgniqltadtdyvlgc 81 (106)
T 3nsw_A 48 VPKTAPSQWPS---FGTLRDDCGNIQLTADTDYVLGC 81 (106)
T ss_dssp CSSCCCSCCCS---EEEEECSSCSCCCCTTEEEEEEE
T ss_pred CCCCCcccCCc---ccccccccCceEEecccCEEEee
Confidence 444444 5998 98878888999888877774433
No 7
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=6.06 E-value=2.3e+02 Score=22.87 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.1
Q ss_pred HHhhcchhHHHhHHHhhhcCCcc
Q 045952 525 IIKLLPLMIRYSVENAVSKLPLE 547 (569)
Q Consensus 525 ~~~~l~~~~~~~~~~~~~~~p~e 547 (569)
++..||-.|+..+.+|+++.|+.
T Consensus 8 wL~~LP~~Lq~kV~aIV~~~PsS 30 (70)
T 2lh0_A 8 FLDELPESLSRKIGTVVRVLPSS 30 (70)
T ss_dssp GGGGSCHHHHHHHHHHHTTCTTH
T ss_pred HHHhCCHHHHHHHHHHHHhCccH
Confidence 35568999999999999999873
No 8
>3qds_A Boletus edulis lectin; mushroom, T-antigen, carbohydrate, S binding, sugar binding protein; 1.15A {Boletus edulis} SCOP: b.97.1.2 PDB: 3qdt_A* 3qdu_A* 3qdv_A* 3qdw_A* 3qdx_A* 3qdy_A* 1x99_A* 1xi0_A
Probab=5.62 E-value=4.5e+02 Score=23.89 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.7
Q ss_pred eEEEEeCCCCcEeEEEEeecCCCceee
Q 045952 401 FTLRICNFTGELWSIYFSQHSGGKWVA 427 (569)
Q Consensus 401 ~tvr~~n~~g~p~~v~~S~H~~G~~~~ 427 (569)
=||||.+.+|+--.|-+.-|.-..|.|
T Consensus 53 G~LRf~~~~Ge~f~v~~GVHNYk~WcD 79 (143)
T 3qds_A 53 GVLRFMSDKGELITVAVGVHNYKRWCD 79 (143)
T ss_dssp EEEEEEETTCCEEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCEEEEEEccccCCccee
Confidence 389999999999999999999988887
No 9
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=7.43 E-value=1.4e+02 Score=19.32 Aligned_cols=13 Identities=38% Similarity=0.923 Sum_probs=11.6
Q ss_pred CCCCccccCCCcC
Q 045952 553 GPTGPKEKNNWVG 565 (569)
Q Consensus 553 GPtGP~~K~~w~~ 565 (569)
||.|-.-|-||.+
T Consensus 1 gplgsscr~nWs~ 13 (26)
T 2yka_B 1 GPLGSSCKTSWAD 13 (26)
Confidence 7889999999987
No 10
>2idl_A Hypothetical protein; conserved hypothetical, MCSG, PSI2, MAD, structural genomics structure initiative; 1.70A {Streptococcus pneumoniae} SCOP: d.64.2.1
Probab=4.91 E-value=5.3e+02 Score=22.05 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=8.4
Q ss_pred hHHHhHHHhhhcCC
Q 045952 532 MIRYSVENAVSKLP 545 (569)
Q Consensus 532 ~~~~~~~~~~~~~p 545 (569)
.+.-.|++|-+.-|
T Consensus 93 ~~~~gL~~i~~~Yp 106 (117)
T 2idl_A 93 SFFLGMANLSENYS 106 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCc
Confidence 34556677766655
Done!