Query 045952
Match_columns 569
No_of_seqs 301 out of 381
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 12:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045952.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045952hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iyjb4 b.40.4.3 (B:2732-2760, 14.8 55 0.004 26.5 3.3 32 47-78 18-53 (111)
2 d1dfca3 b.42.5.1 (A:1260-1382) 8.6 67 0.0049 25.8 1.8 18 390-407 106-123 (123)
3 d1jkna_ d.113.1.1 (A:) Diadeno 8.4 80 0.0058 26.0 2.4 16 157-172 8-24 (165)
4 d2d3na1 b.71.1.1 (A:399-485) B 7.7 1.6E+02 0.012 22.6 3.7 34 395-428 18-56 (87)
5 d1ud2a1 b.71.1.1 (A:391-480) B 7.5 1.6E+02 0.012 22.8 3.6 33 396-428 22-59 (90)
6 d1zhva1 d.58.18.8 (A:2-61) Hyp 7.1 2.1E+02 0.015 20.4 3.8 26 27-52 22-47 (60)
7 d1e43a1 b.71.1.1 (A:394-483) B 6.7 2.8E+02 0.02 21.3 4.7 34 395-428 21-59 (90)
8 d1a6qa1 a.159.1.1 (A:297-368) 5.3 1E+02 0.0075 23.0 1.1 15 28-42 45-59 (72)
9 d1n10a1 b.7.3.1 (A:1146-1240) 5.1 3E+02 0.022 20.8 4.0 31 397-427 14-44 (95)
10 d1vgya2 d.58.19.1 (A:181-293) 5.0 93 0.0068 24.1 0.7 18 441-458 8-25 (113)
No 1
>d1iyjb4 b.40.4.3 (B:2732-2760,B:2898-2979) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.77 E-value=55 Score=26.54 Aligned_cols=32 Identities=16% Similarity=0.463 Sum_probs=20.5
Q ss_pred CeeEEEeccceEeeecc----CCCCCCcceEEeeec
Q 045952 47 EIEVCRISRFNFIWSCN----LLQSKKKSATFYEPA 78 (569)
Q Consensus 47 ~L~V~~~t~FerVW~~~----~~~~~~~~~SfWrP~ 78 (569)
++.|.++--.++||... .-..+..-+|||||.
T Consensus 18 d~~~~r~yp~~~~~~lRV~DYrk~EKsalLSIWRP~ 53 (111)
T d1iyjb4 18 DVIVQRVYPLQWVWKLRVTSYKKREKSALLSIWRPS 53 (111)
T ss_dssp CBCCCEECCCEEEEEEEECBSSSSCCCEEEEEESCC
T ss_pred EEEEEecccHHHhhhhheeeccccccceEEEEeCCc
Confidence 45566666667788633 222334679999998
No 2
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.61 E-value=67 Score=25.78 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.6
Q ss_pred ccccccccceeeEEEEeC
Q 045952 390 KIGQHVGDWEHFTLRICN 407 (569)
Q Consensus 390 ~~G~HvGDWEh~tvr~~n 407 (569)
-.++++|+||..+|++.|
T Consensus 106 a~~~~~g~~e~f~i~l~N 123 (123)
T d1dfca3 106 ASVETAGDSELFLMKLIN 123 (123)
T ss_dssp SCCSSCCSSSEEEEEECS
T ss_pred EccCCCCCceEEEEEEcC
Confidence 457899999999999976
No 3
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}
Probab=8.43 E-value=80 Score=25.98 Aligned_cols=16 Identities=31% Similarity=0.964 Sum_probs=12.4
Q ss_pred cCCCCce-ecceEEeCC
Q 045952 157 QPPDGYK-SMGFLVTKT 172 (569)
Q Consensus 157 vpP~GYv-ALG~VvT~~ 172 (569)
.||+||+ ++|.|+.+.
T Consensus 8 ~~~~~yR~~Vg~vI~n~ 24 (165)
T d1jkna_ 8 SPPEGYRRNVGICLMNN 24 (165)
T ss_dssp SCCSSEEEEEEEEEECT
T ss_pred CCCCCccccEEEEEEeC
Confidence 4788998 588888754
No 4
>d2d3na1 b.71.1.1 (A:399-485) Bacterial alpha-Amylase {Bacillus sp. 707 [TaxId: 1416]}
Probab=7.72 E-value=1.6e+02 Score=22.65 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=23.4
Q ss_pred ccccee----eEEEEeCCCCcEeEEEEeecCCC-ceeec
Q 045952 395 VGDWEH----FTLRICNFTGELWSIYFSQHSGG-KWVAA 428 (569)
Q Consensus 395 vGDWEh----~tvr~~n~~g~p~~v~~S~H~~G-~~~~~ 428 (569)
.||.|| +.|.++|..+--+.||...+..| .|+|.
T Consensus 18 ~G~~~hp~sGlAvv~Sng~~g~K~M~VG~~~Ag~~w~D~ 56 (87)
T d2d3na1 18 EGNTAHPNSGLATIMSDGAGGSKWMFVGRNKAGQVWSDI 56 (87)
T ss_dssp CCCTTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEET
T ss_pred cCCccCCCCCEEEEEeCCCCceEEEEeCcccCCCEEEEc
Confidence 356776 88999986555678888665544 46664
No 5
>d1ud2a1 b.71.1.1 (A:391-480) Bacterial alpha-Amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}
Probab=7.52 E-value=1.6e+02 Score=22.79 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=23.2
Q ss_pred cccee----eEEEEeCCCCcEeEEEEeecCCCc-eeec
Q 045952 396 GDWEH----FTLRICNFTGELWSIYFSQHSGGK-WVAA 428 (569)
Q Consensus 396 GDWEh----~tvr~~n~~g~p~~v~~S~H~~G~-~~~~ 428 (569)
||.|| +.|.++|..+--+.|+...+..|+ |+|.
T Consensus 22 G~~~~p~sGlAvv~Sng~~g~K~M~VG~~~Ag~~w~D~ 59 (90)
T d1ud2a1 22 GSSSRPNSGLATIMSNGPGGSKWMYVGRQNAGQTWTDL 59 (90)
T ss_dssp CCTTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEET
T ss_pred CCcCCCCCCEEEEEeCCCCceEEEEeCcccCCCEEEEc
Confidence 56676 889999965566788877665554 6663
No 6
>d1zhva1 d.58.18.8 (A:2-61) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.13 E-value=2.1e+02 Score=20.43 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCcceeeeecCCeeEEE
Q 045952 27 APLPTWPQGQGFASGRINLGEIEVCR 52 (569)
Q Consensus 27 ~p~p~~p~g~~fa~g~i~lg~L~V~~ 52 (569)
+++|.|-.+++|.+-.-.-.||-|+-
T Consensus 22 s~iP~w~~~~~f~sItrT~dELSvVC 47 (60)
T d1zhva1 22 EAIPAWADGGGFVSITRTDDELSIVC 47 (60)
T ss_dssp CCCCTTTSSSSCCEEEECSSCEEEEE
T ss_pred CCCCccccCCCEEEEEecCCceEEEE
Confidence 79999999999977666666777654
No 7
>d1e43a1 b.71.1.1 (A:394-483) Bacterial alpha-Amylase {Bacillus licheniformis [TaxId: 1402]}
Probab=6.65 E-value=2.8e+02 Score=21.28 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=24.1
Q ss_pred ccccee----eEEEEeCCCCcEeEEEEeecCCCc-eeec
Q 045952 395 VGDWEH----FTLRICNFTGELWSIYFSQHSGGK-WVAA 428 (569)
Q Consensus 395 vGDWEh----~tvr~~n~~g~p~~v~~S~H~~G~-~~~~ 428 (569)
.||.|| +.|.++|..+--+.|+...+..|+ |+|.
T Consensus 21 ~G~~~~~~sGlavviSng~~g~K~M~VG~~~ag~~~~D~ 59 (90)
T d1e43a1 21 EGDSSVANSGLAALITDGPGGAKRMYVGRQNAGETWHDI 59 (90)
T ss_dssp CCCTTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEET
T ss_pred cCCccCCCCCEEEEEeCCCcccEEEEeCcccCCCEEEec
Confidence 345553 788899866667899988877665 6663
No 8
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.25 E-value=1e+02 Score=23.02 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=12.3
Q ss_pred CCCCCCCCCCcceee
Q 045952 28 PLPTWPQGQGFASGR 42 (569)
Q Consensus 28 p~p~~p~g~~fa~g~ 42 (569)
-||..|+|+|+.+=+
T Consensus 45 ~Ip~LPPGGGL~sK~ 59 (72)
T d1a6qa1 45 NIPSLPPGGELASKR 59 (72)
T ss_dssp TCSSCCTTTGGGGGH
T ss_pred CCCCCCCCccHHHHH
Confidence 589999999987644
No 9
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=5.06 E-value=3e+02 Score=20.84 Aligned_cols=31 Identities=13% Similarity=0.421 Sum_probs=23.6
Q ss_pred cceeeEEEEeCCCCcEeEEEEeecCCCceee
Q 045952 397 DWEHFTLRICNFTGELWSIYFSQHSGGKWVA 427 (569)
Q Consensus 397 DWEh~tvr~~n~~g~p~~v~~S~H~~G~~~~ 427 (569)
-|-.++|+..+..|...+|.+.+|..++|..
T Consensus 14 ~~lav~v~n~~g~gdI~~vevk~~g~~~W~~ 44 (95)
T d1n10a1 14 NYLALLVKYVNGDGDVVAVDIKEKGKDKWIE 44 (95)
T ss_dssp TEEEEEEECCCCSSCEEEEEEEETTCCCCEE
T ss_pred ceEEEEEEEcCCCCcEEEEEEEeCCCCcceE
Confidence 3666666665555679999999998888776
No 10
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]}
Probab=4.95 E-value=93 Score=24.14 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=14.4
Q ss_pred EEEcCCCCCCCCCCcccc
Q 045952 441 VYSSKNGHASFPHPGTYL 458 (569)
Q Consensus 441 vYsa~gsHa~y~~~G~~~ 458 (569)
.--++++||.||+-|.-.
T Consensus 8 ~i~Gk~gHaa~P~~g~Np 25 (113)
T d1vgya2 8 TVKGKQGHIAYPHLAINP 25 (113)
T ss_dssp EEECBCEETTCGGGCBCH
T ss_pred EEEEEeecccCcccCCCc
Confidence 335899999999988764
Done!