BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045953
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CWM4|PFD1_MOUSE Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=2 SV=1
Length = 122
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%)
Query: 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
+ AF E++ ++I+ K+K Q+ KK A+LT E+ L D TN Y+ +GR F+
Sbjct: 10 KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69
Query: 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
L+ K V+ N+ ++ K ++ I L+ K YLE+ E E N+ E+L
Sbjct: 70 LQSKEVIHNQLLEKQKIAKEKIKELEQKKSYLERSVKEAEDNIREML 116
>sp|Q3SZE2|PFD1_BOVIN Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1
Length = 122
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
+ AF E++ ++I+ K+K Q+ KK A+LT E+ L D TN Y+ +GR F+
Sbjct: 10 KKAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69
Query: 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
L+ K + N+ ++ K +E I L+ K YLE+ E E N+ E+L
Sbjct: 70 LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116
>sp|Q5RAM7|PFD1_PONAB Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1
Length = 122
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
+ AF E++ ++I+ K+K Q+ KK A+LT E+ L D TN Y+ +GR F+
Sbjct: 10 KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69
Query: 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
L+ K + N+ ++ K +E I L+ K YLE+ E E N+ E+L
Sbjct: 70 LQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116
>sp|O60925|PFD1_HUMAN Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2
Length = 122
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%)
Query: 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
+ AF E++ ++I+ K+K Q+ KK A+LT E+ L D TN Y+ +GR F+
Sbjct: 10 KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI 69
Query: 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
L+ K + ++ ++ K +E I L+ K YLE+ E E N+ E+L
Sbjct: 70 LQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116
>sp|Q4SPU8|PFD1_TETNG Prefoldin subunit 1 OS=Tetraodon nigroviridis GN=pfdn1 PE=3 SV=1
Length = 122
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%)
Query: 3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIG 62
DE + AF E++ ++I+ K + Q+ +K A LT E+ LPDNT Y+ +G
Sbjct: 6 DEELKKAFTELQAKVIDTQQKARLADLQIDQLTKVQKHARLTQTEMASLPDNTRLYEGVG 65
Query: 63 RTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
R F+L K + N K ++ + L+ K YLE+ E E N+ E+L
Sbjct: 66 RMFILRSKEEINNHLTDAQKTADEKVKELEQKKVYLERSVKEAEDNIREML 116
>sp|Q5D016|PFD1_DANRE Prefoldin subunit 1 OS=Danio rerio GN=pfdn1 PE=2 SV=1
Length = 122
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66
+ AF E++ +M++ K+K Q+ KK A LT E+ LP++T ++ GR F+
Sbjct: 10 KKAFAELQAKMVDTQQKVKLADLQIEQLSRVKKHANLTHGEITSLPESTRMFEGAGRMFI 69
Query: 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113
L+ K + N+ ++ K ++ I L+ K YLE+ + E N+ E+L
Sbjct: 70 LQSKGEISNQLLEKQKTADDKIKELEQKKTYLERSVKDAEDNIREML 116
>sp|Q54JS0|PFD1_DICDI Probable prefoldin subunit 1 OS=Dictyostelium discoideum GN=pfdn1
PE=3 SV=1
Length = 115
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 63/110 (57%)
Query: 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTF 65
++ AF E + ++ + + ++ +++ E ++K+ +T+ EL L T TYK++G+ F
Sbjct: 5 DKQAFFETREKLYTLSRSLNIIKQRIQIAENDRKKCLITINELESLSSETKTYKAVGKMF 64
Query: 66 VLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115
V+ P + L E +Q+++ E + L +Y++ Q + E +L EL+++
Sbjct: 65 VISPMTSLKTELKQQVQKDEEDVKGLINQSKYIDAQITDTERSLNELVRK 114
>sp|Q17827|PFD1_CAEEL Probable prefoldin subunit 1 OS=Caenorhabditis elegans GN=pfd-1
PE=2 SV=1
Length = 117
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 1 MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKR--AYLTLEELRQLPDNTNTY 58
M+DE AF++++ + N +M+ VQ + K +K + T + L L +N Y
Sbjct: 1 MADEEISKAFRDLQFKT--NETRMRIVQGEQNKKVNYQKMRISESTKKNLVDLDENLKYY 58
Query: 59 KSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114
+S+GR F+L K ++ E K S+ I A++ K+YLEK E E+NL EL+Q
Sbjct: 59 RSVGRMFLLTDKPAEISRHEAEAKQSKEKIEAIEKQKDYLEKGLVEAETNLRELIQ 114
>sp|Q61SU8|PFD1_CAEBR Probable prefoldin subunit 1 OS=Caenorhabditis briggsae GN=pfd-1
PE=3 SV=1
Length = 117
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 1 MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKR--AYLTLEELRQLPDNTNTY 58
M+DE AF++++ + N +M+ VQ + K +K + T L L ++ Y
Sbjct: 1 MADEEISKAFRDLQFKT--NETRMRIVQGEQNKKVNHQKMRISESTKRNLIGLNEDLKYY 58
Query: 59 KSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114
+S+GR F+L K+ + E K S+ I A+ KEYLEK E ESNL EL+Q
Sbjct: 59 RSVGRMFLLTDKASEIARHETEAKQSKDKIEAIDKQKEYLEKGLVEAESNLRELIQ 114
>sp|O29115|PFDB_ARCFU Prefoldin subunit beta OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=pfdB
PE=3 SV=1
Length = 116
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 45 LEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAE 104
LEEL+++ D T YK++G V E K ++ E ++ + E I LQ +E L ++ AE
Sbjct: 43 LEELQKVDDETPVYKAVGNILVKEKKEDVIKELTEKKETYEIRIKTLQRQEEKLRERFAE 102
Query: 105 VESNLAELLQQDPG 118
+ L LL G
Sbjct: 103 TQQKLQNLLSPQAG 116
>sp|Q9YC11|PFDB_AERPE Prefoldin subunit beta OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=pfdB PE=3
SV=1
Length = 123
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 44 TLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKA 103
L+EL LP++ Y+ G V + K+ ++ + +R +D E + L++ +E+L+K+
Sbjct: 43 VLKELEGLPEDAELYRLTGFVLVKKSKNEVVEDLNKRKEDLELKLKVLKSQEEHLKKELE 102
Query: 104 EVESNLAELLQ 114
+ES L LLQ
Sbjct: 103 RIESELRRLLQ 113
>sp|Q979C4|PFDB_THEVO Prefoldin subunit beta OS=Thermoplasma volcanium (strain ATCC 51530
/ DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=pfdB PE=3
SV=1
Length = 124
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 44 TLEELRQLPDNTNTYKSIGRT-FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQK 102
TL+EL ++ D T Y+SIG + ++ K L++E E++L+ ++ I L ++ LE++
Sbjct: 44 TLQELNKIDDKTPVYRSIGSILYKVDDKKKLIDELEEQLELTKIRINTLDKQQKSLEEKY 103
Query: 103 AEVESNLAELLQQD 116
E+++ + E QD
Sbjct: 104 KELQAAIRERYNQD 117
>sp|P22470|SAN1_YEAST Protein SAN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SAN1 PE=1 SV=1
Length = 610
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEP 69
+ E + + K K+ EG KKR LR DN ++ SI V+EP
Sbjct: 169 YDEYEDEVDSTKAKRKRDSENEEESEGTKKRKDNEGAPLRTTADN-DSNPSITNATVVEP 227
Query: 70 KSVLMNEQEQRLKDSES 86
S+ + EQ++ L D E+
Sbjct: 228 PSIPLTEQQRTLNDEET 244
>sp|Q9HJ36|PFDB_THEAC Prefoldin subunit beta OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=pfdB PE=3 SV=1
Length = 124
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 44 TLEELRQLPDNTNTYKSIGRT-FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQK 102
TL+EL +L DNT Y+++G + ++ K L++E +++++ ++ ++ L+ ++ LE++
Sbjct: 44 TLDELNKLDDNTPIYRTVGSILYRVQDKKKLVDELDEQIELTKIRLSTLEKQQKSLEEKY 103
Query: 103 AEVES 107
E+++
Sbjct: 104 KELQN 108
>sp|A0B8V8|PFDB_METTP Prefoldin subunit beta OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=pfdB PE=3 SV=1
Length = 120
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 38 KKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRL 81
KK A ++EL + PD+ YK++G + K+ LM E ++R+
Sbjct: 37 KKEAEAAIKELDKSPDDVVVYKNVGELMLRSDKATLMTELKERV 80
>sp|C5A6Y5|PFDB_THEGJ Prefoldin subunit beta OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=pfdB PE=3 SV=1
Length = 117
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 45 LEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQ 92
LEE+ +LPD+ YK++G V K+ + E +++++ E + AL+
Sbjct: 43 LEEIEKLPDDAVIYKTVGTLIVKTEKAKAVEELKEKVETLEVRLNALE 90
>sp|Q9UYJ4|PFDB_PYRAB Prefoldin subunit beta OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=pfdB PE=3 SV=1
Length = 117
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 45 LEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAAL 91
LEE+ LPD+ YK++G V K + E +++++ E + AL
Sbjct: 43 LEEIEALPDDAQVYKTVGTLIVKTTKEKALQELKEKVETLEVRLNAL 89
>sp|A8MB97|PFDB_CALMQ Prefoldin subunit beta OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=pfdB PE=3
SV=1
Length = 121
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 35 EGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQAS 94
EGE + L EL +LP ++ YK +G + + + + QR + + + +L
Sbjct: 34 EGELRNVDKALNELNKLPQDSKVYKVVGTFLLSTTRDEAIQDLNQRKELLDLHLQSLVKQ 93
Query: 95 KEYLEKQKAEVESNLAELL 113
+ L KQ +E+E+ + ++L
Sbjct: 94 ENMLRKQISELENKVKQVL 112
>sp|O58268|PFDB_PYRHO Prefoldin subunit beta OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pfdB PE=1 SV=1
Length = 117
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 45 LEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAAL 91
LEE+ LPD+ YK++G V K + E +++++ E + AL
Sbjct: 43 LEEIETLPDDAQIYKTVGTLIVKTTKEKAVQELKEKIETLEVRLNAL 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.122 0.308
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,105,370
Number of Sequences: 539616
Number of extensions: 1452273
Number of successful extensions: 7882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 308
Number of HSP's that attempted gapping in prelim test: 7442
Number of HSP's gapped (non-prelim): 781
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)