Query 045953
Match_columns 129
No_of_seqs 106 out of 309
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3501 Molecular chaperone Pr 100.0 2.7E-29 5.8E-34 174.1 12.9 113 6-118 1-113 (114)
2 PRK09343 prefoldin subunit bet 99.9 3.2E-25 6.8E-30 158.6 15.4 111 5-115 4-114 (121)
3 TIGR02338 gimC_beta prefoldin, 99.9 1.9E-23 4.1E-28 146.8 14.8 106 10-115 5-110 (110)
4 COG1382 GimC Prefoldin, chaper 99.9 1.4E-21 3.1E-26 139.2 14.6 109 9-117 7-115 (119)
5 PF01920 Prefoldin_2: Prefoldi 99.9 5.1E-22 1.1E-26 136.6 10.4 105 11-115 1-105 (106)
6 cd00632 Prefoldin_beta Prefold 99.8 4.2E-19 9.2E-24 123.6 14.1 104 10-113 1-104 (105)
7 KOG3478 Prefoldin subunit 6, K 99.1 5.1E-09 1.1E-13 73.8 13.6 109 5-113 2-110 (120)
8 cd00890 Prefoldin Prefoldin is 99.1 2.1E-09 4.5E-14 76.0 10.9 103 11-113 2-128 (129)
9 PRK03947 prefoldin subunit alp 98.9 6E-08 1.3E-12 70.2 12.4 109 7-115 5-137 (140)
10 TIGR00293 prefoldin, archaeal 98.4 1.2E-05 2.7E-10 56.9 11.2 100 11-110 2-124 (126)
11 KOG4098 Molecular chaperone Pr 98.3 3.5E-05 7.5E-10 56.0 12.3 95 12-106 19-113 (140)
12 PRK14011 prefoldin subunit alp 98.2 5.3E-05 1.1E-09 55.9 12.6 109 3-115 2-131 (144)
13 cd00584 Prefoldin_alpha Prefol 98.2 3.7E-05 7.9E-10 54.7 11.3 102 12-113 3-128 (129)
14 KOG1760 Molecular chaperone Pr 97.5 0.0053 1.1E-07 44.3 12.4 102 8-115 23-124 (131)
15 COG1730 GIM5 Predicted prefold 97.5 0.0047 1E-07 45.7 11.7 106 8-113 6-135 (145)
16 PF02996 Prefoldin: Prefoldin 97.3 0.00064 1.4E-08 47.4 5.9 62 53-114 57-119 (120)
17 PRK01203 prefoldin subunit alp 96.9 0.045 9.7E-07 39.8 11.8 95 12-106 4-121 (130)
18 cd00632 Prefoldin_beta Prefold 96.2 0.058 1.2E-06 37.2 8.6 98 6-105 4-103 (105)
19 PRK03947 prefoldin subunit alp 96.2 0.028 6.1E-07 40.4 7.1 111 12-122 3-137 (140)
20 PRK09343 prefoldin subunit bet 96.1 0.11 2.4E-06 36.9 9.8 108 12-119 4-111 (121)
21 TIGR02338 gimC_beta prefoldin, 95.9 0.13 2.9E-06 35.7 9.3 95 18-112 6-100 (110)
22 COG1730 GIM5 Predicted prefold 95.7 0.024 5.2E-07 41.9 5.0 110 14-123 5-131 (145)
23 PF01920 Prefoldin_2: Prefoldi 94.8 0.25 5.4E-06 33.2 7.4 100 5-104 2-101 (106)
24 PRK11637 AmiB activator; Provi 94.6 2.1 4.5E-05 36.2 14.1 42 72-113 89-130 (428)
25 cd00890 Prefoldin Prefoldin is 94.5 0.15 3.3E-06 35.5 6.0 33 20-52 4-36 (129)
26 PRK03918 chromosome segregatio 94.3 1.7 3.6E-05 39.5 13.6 98 5-105 388-485 (880)
27 PF05377 FlaC_arch: Flagella a 94.1 0.35 7.5E-06 30.2 6.3 41 74-114 2-42 (55)
28 TIGR00293 prefoldin, archaeal 93.2 0.48 1E-05 33.2 6.6 96 18-113 2-120 (126)
29 cd00584 Prefoldin_alpha Prefol 92.5 0.86 1.9E-05 32.1 7.1 96 19-114 3-122 (129)
30 COG1382 GimC Prefoldin, chaper 92.4 2.1 4.5E-05 30.7 8.9 90 17-112 8-103 (119)
31 PRK02224 chromosome segregatio 92.1 2.5 5.4E-05 38.5 11.3 96 12-108 409-504 (880)
32 PHA02562 46 endonuclease subun 91.9 2.5 5.4E-05 36.3 10.6 33 10-42 301-333 (562)
33 PHA02562 46 endonuclease subun 91.1 4 8.6E-05 35.1 11.0 36 59-96 288-323 (562)
34 PRK01156 chromosome segregatio 90.7 11 0.00023 34.7 13.9 101 8-112 409-509 (895)
35 PF09726 Macoilin: Transmembra 90.3 8.2 0.00018 35.2 12.6 106 7-114 466-580 (697)
36 PRK10884 SH3 domain-containing 89.4 8.5 0.00018 29.9 12.8 82 4-110 89-170 (206)
37 COG1579 Zn-ribbon protein, pos 89.2 9.9 0.00022 30.3 14.1 103 5-111 42-149 (239)
38 PRK03918 chromosome segregatio 88.2 18 0.00039 32.9 13.3 21 75-95 310-330 (880)
39 KOG0995 Centromere-associated 87.8 11 0.00025 33.6 11.3 98 7-104 227-326 (581)
40 KOG0996 Structural maintenance 87.7 13 0.00028 36.0 12.2 52 4-55 387-438 (1293)
41 PRK02119 hypothetical protein; 87.2 5 0.00011 26.1 6.9 52 75-126 5-56 (73)
42 COG3883 Uncharacterized protei 87.1 15 0.00032 29.8 13.3 41 72-112 148-188 (265)
43 PRK11637 AmiB activator; Provi 87.1 17 0.00037 30.6 15.3 49 70-118 168-216 (428)
44 PF08317 Spc7: Spc7 kinetochor 87.0 15 0.00033 30.0 14.1 42 74-115 211-252 (325)
45 PRK09039 hypothetical protein; 86.7 17 0.00037 30.2 12.7 38 8-45 123-160 (343)
46 PRK04406 hypothetical protein; 86.7 6.2 0.00013 25.9 7.1 52 74-125 6-57 (75)
47 PF04012 PspA_IM30: PspA/IM30 85.8 14 0.00029 28.2 13.3 46 5-50 27-72 (221)
48 PF03148 Tektin: Tektin family 85.1 22 0.00047 29.9 14.3 111 3-124 246-362 (384)
49 PF04949 Transcrip_act: Transc 84.0 16 0.00034 27.4 11.1 86 25-125 52-137 (159)
50 PF13758 Prefoldin_3: Prefoldi 83.9 6.1 0.00013 27.5 6.3 37 66-102 62-98 (99)
51 TIGR00606 rad50 rad50. This fa 83.9 20 0.00043 34.7 11.8 47 75-121 825-878 (1311)
52 TIGR02977 phageshock_pspA phag 83.8 18 0.00038 27.9 14.6 46 5-50 28-73 (219)
53 PRK02793 phi X174 lysis protei 83.0 9.3 0.0002 24.7 6.6 49 77-125 6-54 (72)
54 PRK04325 hypothetical protein; 82.9 9.2 0.0002 24.9 6.6 48 77-124 7-54 (74)
55 KOG4286 Dystrophin-like protei 82.3 31 0.00068 32.2 11.7 62 4-68 202-263 (966)
56 TIGR02169 SMC_prok_A chromosom 82.1 43 0.00093 31.1 14.5 33 77-109 453-485 (1164)
57 COG1579 Zn-ribbon protein, pos 81.7 25 0.00054 28.1 11.3 29 20-48 43-71 (239)
58 PRK04863 mukB cell division pr 81.3 61 0.0013 32.3 14.6 103 6-114 1004-1116(1486)
59 PRK00295 hypothetical protein; 81.3 10 0.00022 24.3 6.3 39 74-112 7-45 (68)
60 PF04977 DivIC: Septum formati 80.7 8.1 0.00018 24.3 5.7 54 6-59 22-76 (80)
61 PF15369 KIAA1328: Uncharacter 80.6 12 0.00027 31.1 8.0 60 37-111 6-65 (328)
62 PF10779 XhlA: Haemolysin XhlA 80.1 12 0.00025 23.9 6.3 42 74-115 8-49 (71)
63 KOG0250 DNA repair protein RAD 80.0 55 0.0012 31.5 12.8 91 6-110 342-432 (1074)
64 PRK02224 chromosome segregatio 79.0 52 0.0011 30.1 14.1 29 78-106 264-292 (880)
65 PRK10884 SH3 domain-containing 78.8 28 0.00061 27.0 11.4 52 70-121 116-167 (206)
66 PF05667 DUF812: Protein of un 78.4 51 0.0011 29.6 16.3 103 6-114 333-436 (594)
67 PRK00736 hypothetical protein; 78.1 15 0.00033 23.5 6.4 37 74-110 7-43 (68)
68 COG1842 PspA Phage shock prote 77.8 32 0.0007 27.0 13.6 104 6-112 29-139 (225)
69 PF11932 DUF3450: Protein of u 77.6 32 0.00069 26.9 13.8 97 4-115 24-120 (251)
70 PRK14011 prefoldin subunit alp 77.5 16 0.00035 26.8 7.1 100 16-115 4-124 (144)
71 COG5185 HEC1 Protein involved 76.7 54 0.0012 29.1 13.2 112 16-127 272-388 (622)
72 KOG0976 Rho/Rac1-interacting s 76.6 67 0.0014 30.5 12.0 97 6-104 104-208 (1265)
73 PF08286 Spc24: Spc24 subunit 75.2 0.88 1.9E-05 32.0 -0.1 13 55-68 64-76 (118)
74 PRK10698 phage shock protein P 74.6 38 0.00083 26.3 15.1 106 5-113 28-140 (222)
75 KOG0804 Cytoplasmic Zn-finger 74.5 59 0.0013 28.5 12.3 33 81-113 416-448 (493)
76 TIGR03185 DNA_S_dndD DNA sulfu 74.2 65 0.0014 28.8 13.6 47 4-50 205-251 (650)
77 COG4942 Membrane-bound metallo 74.1 58 0.0012 28.2 10.8 24 22-45 38-61 (420)
78 PF04102 SlyX: SlyX; InterPro 73.7 17 0.00037 23.1 5.7 40 74-113 6-45 (69)
79 PF10805 DUF2730: Protein of u 73.6 26 0.00056 24.2 7.0 55 71-125 34-90 (106)
80 PF08657 DASH_Spc34: DASH comp 73.1 39 0.00084 27.2 8.8 82 12-98 177-258 (259)
81 PF11932 DUF3450: Protein of u 73.1 41 0.0009 26.3 8.9 73 7-84 62-136 (251)
82 TIGR00606 rad50 rad50. This fa 73.0 93 0.002 30.3 12.7 104 5-113 826-929 (1311)
83 PF13118 DUF3972: Protein of u 72.2 24 0.00051 25.6 6.6 50 60-109 59-108 (126)
84 PF12718 Tropomyosin_1: Tropom 71.2 37 0.0008 24.7 12.2 42 10-51 30-71 (143)
85 TIGR03007 pepcterm_ChnLen poly 70.7 66 0.0014 27.4 12.1 38 74-111 312-349 (498)
86 PF04912 Dynamitin: Dynamitin 70.5 35 0.00076 28.5 8.4 44 8-51 322-365 (388)
87 PF14193 DUF4315: Domain of un 70.3 18 0.00038 24.3 5.3 41 75-115 4-45 (83)
88 PF00261 Tropomyosin: Tropomyo 69.9 50 0.0011 25.7 12.8 116 8-123 106-227 (237)
89 PF09304 Cortex-I_coil: Cortex 69.7 33 0.00072 24.2 6.8 36 80-115 38-73 (107)
90 PF08946 Osmo_CC: Osmosensory 69.7 13 0.00028 22.3 4.0 23 76-98 16-38 (46)
91 PRK00846 hypothetical protein; 68.8 31 0.00067 22.8 6.6 48 77-124 11-58 (77)
92 PF07888 CALCOCO1: Calcium bin 67.8 91 0.002 27.9 12.1 58 69-126 252-316 (546)
93 PRK04863 mukB cell division pr 67.2 1.4E+02 0.0031 29.9 13.4 45 70-114 440-484 (1486)
94 PF04156 IncA: IncA protein; 67.1 49 0.0011 24.4 12.1 24 16-39 82-105 (191)
95 PF08614 ATG16: Autophagy prot 66.3 18 0.00039 27.3 5.3 60 54-113 83-143 (194)
96 TIGR02231 conserved hypothetic 65.7 90 0.0019 27.0 13.4 45 71-115 130-174 (525)
97 PF03148 Tektin: Tektin family 65.5 81 0.0018 26.5 12.6 100 5-104 255-363 (384)
98 PF14282 FlxA: FlxA-like prote 65.5 28 0.00061 24.0 5.8 29 3-31 46-74 (106)
99 PF07106 TBPIP: Tat binding pr 65.0 52 0.0011 24.1 11.6 62 19-93 76-137 (169)
100 PF15456 Uds1: Up-regulated Du 64.7 34 0.00073 24.5 6.2 44 73-117 23-66 (124)
101 PRK14127 cell division protein 63.6 23 0.0005 24.9 5.1 55 58-112 16-70 (109)
102 PF07875 Coat_F: Coat F domain 63.5 19 0.0004 22.3 4.2 31 1-31 27-57 (64)
103 PF08172 CASP_C: CASP C termin 63.4 75 0.0016 25.3 10.8 102 11-112 2-119 (248)
104 PF02994 Transposase_22: L1 tr 63.0 31 0.00067 28.9 6.6 41 72-112 144-184 (370)
105 PF00261 Tropomyosin: Tropomyo 62.6 71 0.0015 24.8 13.7 44 6-49 69-112 (237)
106 PF11285 DUF3086: Protein of u 62.4 20 0.00044 29.1 5.1 34 71-104 3-36 (283)
107 PF06120 Phage_HK97_TLTM: Tail 62.3 89 0.0019 25.8 14.3 109 1-113 67-175 (301)
108 PRK05771 V-type ATP synthase s 61.9 1E+02 0.0023 27.5 10.1 44 69-112 83-126 (646)
109 PF15619 Lebercilin: Ciliary p 61.6 71 0.0015 24.5 13.5 86 10-110 14-99 (194)
110 KOG0250 DNA repair protein RAD 61.5 1.6E+02 0.0035 28.5 14.4 94 8-113 682-775 (1074)
111 PF10779 XhlA: Haemolysin XhlA 60.7 41 0.00088 21.4 5.9 40 74-113 15-54 (71)
112 PF01486 K-box: K-box region; 59.6 51 0.0011 22.1 7.6 46 18-65 15-66 (100)
113 PF11471 Sugarporin_N: Maltopo 59.1 32 0.00069 21.6 4.6 30 82-111 28-57 (60)
114 PF15294 Leu_zip: Leucine zipp 58.6 1E+02 0.0022 25.2 12.3 49 4-52 128-176 (278)
115 PF14662 CCDC155: Coiled-coil 58.2 86 0.0019 24.3 11.7 92 27-123 48-139 (193)
116 PF08614 ATG16: Autophagy prot 58.0 78 0.0017 23.8 9.7 44 70-113 135-178 (194)
117 KOG2577 Transcription factor E 57.8 19 0.0004 30.4 4.4 75 34-116 101-181 (354)
118 KOG1029 Endocytic adaptor prot 57.5 1.8E+02 0.0038 27.7 10.7 99 10-114 488-591 (1118)
119 KOG2685 Cystoskeletal protein 57.0 1.3E+02 0.0028 26.0 14.5 116 4-124 274-389 (421)
120 PHA02047 phage lambda Rz1-like 57.0 59 0.0013 22.6 6.0 45 72-116 34-78 (101)
121 PF13864 Enkurin: Calmodulin-b 56.9 57 0.0012 21.9 7.5 50 1-50 37-95 (98)
122 PF00170 bZIP_1: bZIP transcri 56.7 44 0.00096 20.5 6.6 37 71-107 25-61 (64)
123 KOG0884 Similar to cyclophilin 56.5 5.1 0.00011 29.3 0.7 22 44-65 127-148 (161)
124 PRK01156 chromosome segregatio 56.4 1.7E+02 0.0036 27.0 12.2 90 18-113 412-503 (895)
125 smart00787 Spc7 Spc7 kinetocho 56.3 1.1E+02 0.0024 25.1 13.8 33 75-107 228-260 (312)
126 PRK00888 ftsB cell division pr 56.3 64 0.0014 22.2 6.5 56 5-60 31-87 (105)
127 PF06005 DUF904: Protein of un 56.1 53 0.0012 21.3 6.7 26 88-113 41-66 (72)
128 PF14193 DUF4315: Domain of un 55.4 54 0.0012 21.9 5.5 33 80-112 2-34 (83)
129 PF14282 FlxA: FlxA-like prote 54.9 67 0.0015 22.1 6.7 47 70-116 17-74 (106)
130 KOG0161 Myosin class II heavy 54.7 2.7E+02 0.0058 28.9 13.1 39 73-111 965-1003(1930)
131 COG4942 Membrane-bound metallo 54.6 1.4E+02 0.0031 25.8 13.6 117 5-121 49-203 (420)
132 PRK10803 tol-pal system protei 54.2 58 0.0013 25.9 6.6 35 8-42 54-88 (263)
133 PF02403 Seryl_tRNA_N: Seryl-t 54.1 65 0.0014 21.6 9.6 34 86-119 74-107 (108)
134 PF05565 Sipho_Gp157: Siphovir 53.9 62 0.0013 23.8 6.3 46 70-115 45-90 (162)
135 PF04156 IncA: IncA protein; 53.3 89 0.0019 23.0 11.2 36 6-41 86-121 (191)
136 COG1729 Uncharacterized protei 53.3 28 0.0006 28.2 4.6 61 65-126 49-116 (262)
137 PRK13729 conjugal transfer pil 53.2 54 0.0012 28.8 6.6 62 61-122 58-119 (475)
138 PF15397 DUF4618: Domain of un 52.8 1.2E+02 0.0026 24.5 12.9 101 7-113 5-108 (258)
139 smart00338 BRLZ basic region l 52.8 52 0.0011 20.2 5.8 37 71-107 25-61 (65)
140 PF02996 Prefoldin: Prefoldin 52.6 39 0.00085 22.9 4.7 90 25-114 6-112 (120)
141 PF14073 Cep57_CLD: Centrosome 52.4 1E+02 0.0023 23.5 9.4 89 24-115 6-100 (178)
142 PF04111 APG6: Autophagy prote 51.9 80 0.0017 25.9 7.2 39 74-112 52-90 (314)
143 KOG0980 Actin-binding protein 51.8 2.2E+02 0.0048 27.2 13.3 105 11-124 441-546 (980)
144 KOG0995 Centromere-associated 51.6 1.9E+02 0.004 26.2 11.3 62 51-112 403-465 (581)
145 TIGR03185 DNA_S_dndD DNA sulfu 51.3 1.8E+02 0.0039 26.0 13.4 36 74-109 430-465 (650)
146 PF13747 DUF4164: Domain of un 50.2 75 0.0016 21.3 6.4 26 86-111 39-64 (89)
147 PF05816 TelA: Toxic anion res 50.2 1.4E+02 0.0031 24.4 11.3 110 8-117 84-200 (333)
148 PF13514 AAA_27: AAA domain 49.9 2.4E+02 0.0052 27.0 14.3 105 3-114 725-836 (1111)
149 cd04786 HTH_MerR-like_sg7 Heli 49.9 44 0.00095 23.8 4.8 55 69-125 75-129 (131)
150 PF04012 PspA_IM30: PspA/IM30 49.8 1.1E+02 0.0024 23.1 12.9 70 14-86 29-98 (221)
151 PF12329 TMF_DNA_bd: TATA elem 49.7 69 0.0015 20.7 6.3 33 74-106 35-67 (74)
152 KOG2483 Upstream transcription 49.7 1.3E+02 0.0028 23.9 8.1 67 37-106 73-139 (232)
153 PF14992 TMCO5: TMCO5 family 49.7 1.4E+02 0.0031 24.4 9.0 41 71-111 55-95 (280)
154 PF02388 FemAB: FemAB family; 49.4 66 0.0014 27.1 6.4 30 65-94 235-264 (406)
155 COG5293 Predicted ATPase [Gene 49.1 1.9E+02 0.0042 25.7 11.3 109 16-128 256-377 (591)
156 PF10359 Fmp27_WPPW: RNA pol I 48.6 1.3E+02 0.0028 26.0 8.2 68 23-110 164-231 (475)
157 PF13949 ALIX_LYPXL_bnd: ALIX 48.3 1.3E+02 0.0029 23.5 9.8 66 58-123 63-128 (296)
158 PF04859 DUF641: Plant protein 48.2 67 0.0014 23.3 5.5 49 74-122 82-130 (131)
159 TIGR02209 ftsL_broad cell divi 48.1 71 0.0015 20.4 6.5 48 7-54 30-77 (85)
160 KOG0996 Structural maintenance 48.0 2.9E+02 0.0062 27.3 11.3 14 58-71 894-907 (1293)
161 PF03357 Snf7: Snf7; InterPro 47.9 93 0.002 22.1 6.3 44 81-124 3-47 (171)
162 PF03961 DUF342: Protein of un 47.8 1.8E+02 0.0038 24.8 10.3 35 70-104 373-407 (451)
163 KOG0933 Structural maintenance 47.6 2.8E+02 0.006 27.1 13.6 110 6-115 682-802 (1174)
164 PF07926 TPR_MLP1_2: TPR/MLP1/ 47.5 98 0.0021 21.8 12.7 57 70-126 75-131 (132)
165 PRK15422 septal ring assembly 47.3 84 0.0018 21.0 6.3 16 75-90 28-43 (79)
166 PF06005 DUF904: Protein of un 46.7 78 0.0017 20.5 6.9 42 72-113 4-45 (72)
167 PRK09174 F0F1 ATP synthase sub 46.3 1.1E+02 0.0023 23.5 6.7 42 72-113 77-118 (204)
168 PTZ00446 vacuolar sorting prot 46.0 1.2E+02 0.0027 23.3 7.0 46 79-124 27-73 (191)
169 PLN02678 seryl-tRNA synthetase 45.9 2E+02 0.0043 24.9 9.8 31 87-117 79-109 (448)
170 PF12329 TMF_DNA_bd: TATA elem 45.9 81 0.0017 20.4 6.3 45 68-112 8-52 (74)
171 PF08006 DUF1700: Protein of u 45.8 98 0.0021 22.8 6.3 58 69-126 2-63 (181)
172 PF12128 DUF3584: Protein of u 45.8 2.9E+02 0.0063 26.8 10.9 15 25-39 445-459 (1201)
173 PF15070 GOLGA2L5: Putative go 45.6 2.3E+02 0.0051 25.6 12.8 25 74-98 89-113 (617)
174 PF12958 DUF3847: Protein of u 45.5 81 0.0017 21.3 5.2 25 76-100 12-36 (86)
175 PRK04406 hypothetical protein; 45.2 85 0.0018 20.4 6.2 41 72-112 11-51 (75)
176 KOG2189 Vacuolar H+-ATPase V0 44.9 1.4E+02 0.0031 28.0 8.1 41 68-108 88-128 (829)
177 PF03670 UPF0184: Uncharacteri 44.8 95 0.0021 20.9 6.1 39 79-117 26-64 (83)
178 KOG0161 Myosin class II heavy 44.6 3.9E+02 0.0084 27.8 13.5 41 70-110 990-1030(1930)
179 PF10018 Med4: Vitamin-D-recep 44.3 1.3E+02 0.0029 22.5 6.9 39 3-42 11-49 (188)
180 TIGR02894 DNA_bind_RsfA transc 43.5 1.2E+02 0.0025 22.9 6.3 37 77-113 109-145 (161)
181 PF04716 ETC_C1_NDUFA5: ETC co 43.3 31 0.00068 21.4 2.7 28 39-67 9-36 (57)
182 PRK10929 putative mechanosensi 43.2 3.3E+02 0.0071 26.6 13.7 30 2-31 103-132 (1109)
183 PF13887 MRF_C1: Myelin gene r 42.8 41 0.00089 19.2 2.9 32 52-93 4-35 (36)
184 PRK04778 septation ring format 42.7 2.4E+02 0.0052 24.9 13.7 37 75-111 393-429 (569)
185 PRK04778 septation ring format 42.7 2.4E+02 0.0052 24.9 12.7 33 80-112 391-423 (569)
186 PF02994 Transposase_22: L1 tr 42.3 76 0.0017 26.6 5.7 35 75-109 154-188 (370)
187 PRK05431 seryl-tRNA synthetase 42.3 2.2E+02 0.0047 24.3 10.7 36 84-119 71-106 (425)
188 PF05529 Bap31: B-cell recepto 41.8 59 0.0013 24.3 4.6 30 72-101 161-190 (192)
189 KOG1656 Protein involved in gl 41.8 1.5E+02 0.0032 23.4 6.8 45 78-122 20-65 (221)
190 PF09006 Surfac_D-trimer: Lung 41.6 34 0.00074 20.5 2.6 22 21-42 5-26 (46)
191 TIGR00634 recN DNA repair prot 41.6 2.4E+02 0.0053 24.7 14.5 50 5-54 158-207 (563)
192 PF10146 zf-C4H2: Zinc finger- 41.5 1.7E+02 0.0038 23.0 11.3 90 9-110 2-91 (230)
193 PLN02939 transferase, transfer 41.3 2.3E+02 0.0051 27.2 9.1 47 63-110 235-281 (977)
194 PF10018 Med4: Vitamin-D-recep 41.3 1.4E+02 0.003 22.4 6.6 41 73-113 23-63 (188)
195 KOG3684 Ca2+-activated K+ chan 41.1 1E+02 0.0022 27.1 6.3 54 50-105 414-467 (489)
196 PRK11519 tyrosine kinase; Prov 41.1 2.8E+02 0.006 25.2 13.3 27 35-61 317-344 (719)
197 PRK04325 hypothetical protein; 40.8 99 0.0022 20.0 6.2 39 74-112 11-49 (74)
198 TIGR02894 DNA_bind_RsfA transc 40.6 1.6E+02 0.0034 22.2 9.4 40 74-113 99-138 (161)
199 PRK05771 V-type ATP synthase s 40.5 1.8E+02 0.004 25.9 8.2 40 67-106 88-127 (646)
200 PRK11578 macrolide transporter 40.5 2E+02 0.0044 23.4 12.9 90 2-110 93-182 (370)
201 PF10211 Ax_dynein_light: Axon 40.5 1.4E+02 0.003 22.6 6.5 41 74-114 122-162 (189)
202 KOG0755 Mitochondrial oxaloace 40.4 14 0.00031 30.0 1.1 33 46-78 54-86 (320)
203 PRK13729 conjugal transfer pil 40.4 89 0.0019 27.5 5.9 43 71-113 75-117 (475)
204 PRK15422 septal ring assembly 40.3 1.1E+02 0.0024 20.4 7.2 50 72-121 4-53 (79)
205 PF05524 PEP-utilisers_N: PEP- 40.2 26 0.00056 24.2 2.2 52 60-113 11-62 (123)
206 cd07624 BAR_SNX7_30 The Bin/Am 40.2 1E+02 0.0022 23.3 5.8 51 62-112 4-54 (200)
207 KOG4673 Transcription factor T 40.0 3.2E+02 0.007 25.7 12.6 106 17-127 348-462 (961)
208 PRK00736 hypothetical protein; 39.8 98 0.0021 19.6 6.8 48 78-125 4-51 (68)
209 KOG0971 Microtubule-associated 39.6 3.7E+02 0.0079 26.2 11.8 89 13-109 260-348 (1243)
210 PRK02793 phi X174 lysis protei 39.5 1E+02 0.0022 19.8 6.2 41 72-112 8-48 (72)
211 COG1566 EmrA Multidrug resista 39.1 2.3E+02 0.0051 23.8 10.2 61 2-64 85-145 (352)
212 PF04899 MbeD_MobD: MbeD/MobD 38.8 1.1E+02 0.0023 19.8 7.2 44 5-48 25-68 (70)
213 PRK06030 hypothetical protein; 38.8 1.4E+02 0.0031 21.3 6.1 44 57-103 71-114 (124)
214 PF04111 APG6: Autophagy prote 38.7 1.4E+02 0.0031 24.4 6.7 38 75-112 46-83 (314)
215 PRK00295 hypothetical protein; 38.4 1E+02 0.0023 19.5 6.8 49 77-125 3-51 (68)
216 cd04769 HTH_MerR2 Helix-Turn-H 38.4 1.1E+02 0.0023 21.0 5.2 38 69-106 76-113 (116)
217 KOG1962 B-cell receptor-associ 38.0 1.1E+02 0.0024 24.1 5.7 33 91-123 177-209 (216)
218 PF07851 TMPIT: TMPIT-like pro 37.9 2.4E+02 0.0052 23.6 10.7 50 4-53 7-60 (330)
219 PF10280 Med11: Mediator compl 37.8 1.3E+02 0.0029 20.9 5.6 61 22-86 6-73 (117)
220 PF08946 Osmo_CC: Osmosensory 37.7 92 0.002 18.7 4.4 43 69-118 2-44 (46)
221 PRK09039 hypothetical protein; 37.5 2.4E+02 0.0051 23.4 13.8 40 76-115 148-187 (343)
222 PF13851 GAS: Growth-arrest sp 37.5 1.9E+02 0.004 22.1 12.5 107 6-115 60-172 (201)
223 PF05103 DivIVA: DivIVA protei 37.4 10 0.00022 26.3 -0.2 49 58-106 11-59 (131)
224 KOG0946 ER-Golgi vesicle-tethe 37.4 3.7E+02 0.0081 25.6 12.9 41 88-128 801-841 (970)
225 PF13815 Dzip-like_N: Iguana/D 37.1 1.2E+02 0.0026 21.0 5.3 37 76-112 77-113 (118)
226 PRK02119 hypothetical protein; 37.0 1.2E+02 0.0025 19.6 6.2 40 73-112 10-49 (73)
227 PF04977 DivIC: Septum formati 36.9 1E+02 0.0022 19.0 5.4 29 76-104 21-49 (80)
228 KOG2273 Membrane coat complex 36.5 2.8E+02 0.006 23.8 11.9 93 8-113 274-369 (503)
229 PF06810 Phage_GP20: Phage min 36.3 1.7E+02 0.0038 21.5 12.3 48 4-51 2-49 (155)
230 PRK14629 hypothetical protein; 36.0 66 0.0014 22.2 3.7 24 2-25 4-27 (99)
231 CHL00019 atpF ATP synthase CF0 35.6 1.8E+02 0.004 21.5 7.9 48 73-120 49-103 (184)
232 PRK11281 hypothetical protein; 35.5 4.3E+02 0.0094 25.8 12.5 99 4-102 124-250 (1113)
233 PF00170 bZIP_1: bZIP transcri 35.4 1.1E+02 0.0023 18.7 5.9 38 76-113 23-60 (64)
234 KOG0018 Structural maintenance 35.3 4.4E+02 0.0095 25.8 13.2 55 5-59 314-369 (1141)
235 KOG0239 Kinesin (KAR3 subfamil 34.9 3.6E+02 0.0078 24.7 12.4 107 13-124 180-286 (670)
236 PF08232 Striatin: Striatin fa 34.8 1.7E+02 0.0037 20.9 6.2 39 74-112 27-65 (134)
237 cd01106 HTH_TipAL-Mta Helix-Tu 34.7 1.4E+02 0.003 19.9 5.3 30 71-100 72-101 (103)
238 PRK08476 F0F1 ATP synthase sub 34.6 1.7E+02 0.0037 20.9 7.0 43 65-110 27-69 (141)
239 KOG0804 Cytoplasmic Zn-finger 34.5 3.3E+02 0.0071 24.1 11.1 28 90-117 407-434 (493)
240 TIGR00414 serS seryl-tRNA synt 34.5 2.9E+02 0.0063 23.5 10.7 32 87-118 77-108 (418)
241 smart00338 BRLZ basic region l 34.3 1.1E+02 0.0024 18.7 5.7 35 78-112 25-59 (65)
242 PRK14549 50S ribosomal protein 34.3 1.3E+02 0.0027 19.2 6.6 47 1-47 12-63 (69)
243 KOG3478 Prefoldin subunit 6, K 34.0 1.8E+02 0.0038 20.8 10.7 99 13-111 3-101 (120)
244 PF06156 DUF972: Protein of un 33.8 1.6E+02 0.0035 20.4 7.6 40 1-40 1-40 (107)
245 COG2075 RPL24A Ribosomal prote 33.7 9.4 0.0002 24.7 -0.8 17 54-70 10-26 (66)
246 KOG2911 Uncharacterized conser 33.5 1E+02 0.0023 26.8 5.2 58 65-122 217-277 (439)
247 PRK10929 putative mechanosensi 33.2 4.7E+02 0.01 25.6 14.7 54 71-124 264-323 (1109)
248 KOG0979 Structural maintenance 33.2 4.7E+02 0.01 25.5 11.3 103 8-110 759-873 (1072)
249 PF15456 Uds1: Up-regulated Du 33.1 1.8E+02 0.0039 20.7 12.5 80 18-109 32-111 (124)
250 cd07591 BAR_Rvs161p The Bin/Am 33.1 1.5E+02 0.0033 23.0 5.8 46 80-125 12-57 (224)
251 KOG1937 Uncharacterized conser 33.0 3.5E+02 0.0076 24.0 11.4 88 20-113 350-437 (521)
252 PF05529 Bap31: B-cell recepto 32.9 2.1E+02 0.0045 21.3 10.1 38 70-107 152-189 (192)
253 PF12958 DUF3847: Protein of u 32.8 1.1E+02 0.0025 20.5 4.4 34 74-107 3-36 (86)
254 PF07195 FliD_C: Flagellar hoo 32.4 1.5E+02 0.0032 23.0 5.6 33 79-111 193-225 (239)
255 PF05377 FlaC_arch: Flagella a 32.4 1.3E+02 0.0027 18.7 4.6 21 84-104 5-25 (55)
256 PRK06798 fliD flagellar cappin 32.2 98 0.0021 26.6 4.9 32 79-110 379-410 (440)
257 KOG4571 Activating transcripti 32.0 1.9E+02 0.0041 23.9 6.3 40 73-112 242-281 (294)
258 TIGR02231 conserved hypothetic 32.0 3.4E+02 0.0073 23.5 10.2 33 9-41 72-104 (525)
259 cd01109 HTH_YyaN Helix-Turn-He 31.8 1.6E+02 0.0036 19.8 5.6 32 71-102 78-109 (113)
260 PRK04654 sec-independent trans 31.8 2.1E+02 0.0046 22.5 6.3 53 57-114 28-82 (214)
261 PF12128 DUF3584: Protein of u 31.7 4.9E+02 0.011 25.3 13.4 41 71-111 833-873 (1201)
262 PRK00306 50S ribosomal protein 31.7 1.3E+02 0.0029 18.7 6.0 24 1-24 9-32 (66)
263 TIGR01005 eps_transp_fam exopo 31.7 3.9E+02 0.0085 24.1 14.0 27 84-110 343-369 (754)
264 PF00430 ATP-synt_B: ATP synth 31.5 1.7E+02 0.0037 19.9 6.0 33 84-116 42-74 (132)
265 PRK01203 prefoldin subunit alp 31.4 1.3E+02 0.0027 21.9 4.7 92 19-113 4-121 (130)
266 PRK14472 F0F1 ATP synthase sub 31.3 2.1E+02 0.0046 21.0 7.9 48 65-115 38-92 (175)
267 PRK08032 fliD flagellar cappin 31.3 1.3E+02 0.0028 25.9 5.5 32 80-111 407-438 (462)
268 KOG2180 Late Golgi protein sor 31.3 4.5E+02 0.0097 24.7 12.7 114 5-118 83-205 (793)
269 PF15619 Lebercilin: Ciliary p 30.7 2.5E+02 0.0053 21.5 14.3 95 5-113 58-159 (194)
270 PRK06231 F0F1 ATP synthase sub 30.4 2.5E+02 0.0054 21.5 8.0 40 73-112 73-112 (205)
271 PRK00409 recombination and DNA 30.4 2.2E+02 0.0048 26.4 7.1 29 70-98 518-546 (782)
272 TIGR03017 EpsF chain length de 30.2 3.2E+02 0.007 22.7 13.3 80 31-111 256-336 (444)
273 PF14227 UBN2_2: gag-polypepti 30.2 1.4E+02 0.0031 20.0 4.7 55 22-79 46-106 (119)
274 PF06667 PspB: Phage shock pro 30.0 96 0.0021 20.4 3.5 24 70-93 40-63 (75)
275 PF07106 TBPIP: Tat binding pr 29.6 1.9E+02 0.0042 21.0 5.6 64 38-103 32-103 (169)
276 PRK07352 F0F1 ATP synthase sub 29.5 2.3E+02 0.0049 20.8 7.9 40 73-112 44-83 (174)
277 KOG3313 Molecular chaperone Pr 29.4 32 0.00069 26.4 1.3 90 22-111 58-167 (187)
278 PRK00587 hypothetical protein; 29.4 1E+02 0.0023 21.2 3.8 20 5-24 5-24 (99)
279 PF07888 CALCOCO1: Calcium bin 29.2 4.2E+02 0.0092 23.8 13.6 85 7-95 149-236 (546)
280 PF07200 Mod_r: Modifier of ru 29.2 1.2E+02 0.0025 21.6 4.3 20 94-113 70-89 (150)
281 PF11802 CENP-K: Centromere-as 29.1 3.2E+02 0.0069 22.3 10.9 94 5-100 27-128 (268)
282 TIGR01834 PHA_synth_III_E poly 29.1 3E+02 0.0064 23.0 7.0 48 5-52 267-319 (320)
283 PF11083 Streptin-Immun: Lanti 28.9 2E+02 0.0044 20.0 8.5 78 31-113 8-86 (99)
284 PF10498 IFT57: Intra-flagella 28.8 2.5E+02 0.0054 23.6 6.7 47 67-113 233-279 (359)
285 PF00831 Ribosomal_L29: Riboso 28.5 1.4E+02 0.0031 18.1 5.0 26 1-26 7-32 (58)
286 PF13864 Enkurin: Calmodulin-b 28.4 1.9E+02 0.004 19.4 6.5 44 69-112 41-93 (98)
287 PF08025 Antimicrobial_3: Spid 28.4 28 0.00061 19.5 0.7 10 55-64 14-23 (37)
288 PRK08032 fliD flagellar cappin 28.4 2.2E+02 0.0048 24.5 6.5 48 76-123 410-461 (462)
289 PHA01750 hypothetical protein 28.2 1.7E+02 0.0038 19.0 6.1 39 70-108 33-71 (75)
290 PF10828 DUF2570: Protein of u 28.2 2E+02 0.0043 19.7 7.1 37 81-117 55-91 (110)
291 KOG1003 Actin filament-coating 28.0 3E+02 0.0064 21.6 11.1 52 70-121 142-193 (205)
292 KOG4643 Uncharacterized coiled 28.0 5.9E+02 0.013 25.0 11.0 54 59-112 254-313 (1195)
293 PF07889 DUF1664: Protein of u 27.9 2.3E+02 0.005 20.3 6.0 37 73-109 83-119 (126)
294 PF07544 Med9: RNA polymerase 27.8 1.5E+02 0.0032 19.4 4.3 43 68-110 24-69 (83)
295 PF14257 DUF4349: Domain of un 27.7 2.9E+02 0.0064 21.4 7.9 28 75-102 165-192 (262)
296 smart00502 BBC B-Box C-termina 27.6 1.8E+02 0.004 19.1 11.3 67 5-81 4-70 (127)
297 PF04799 Fzo_mitofusin: fzo-li 27.6 2.8E+02 0.006 21.1 7.0 25 69-93 117-141 (171)
298 TIGR02976 phageshock_pspB phag 27.5 1.2E+02 0.0026 19.8 3.7 23 71-93 41-63 (75)
299 PRK00888 ftsB cell division pr 27.5 1.7E+02 0.0036 20.1 4.6 34 74-107 29-62 (105)
300 KOG4603 TBP-1 interacting prot 27.3 2.2E+02 0.0047 22.0 5.5 68 39-108 40-115 (201)
301 KOG3647 Predicted coiled-coil 27.3 3.6E+02 0.0078 22.3 10.9 48 5-52 109-160 (338)
302 PF12732 YtxH: YtxH-like prote 27.1 1.7E+02 0.0036 18.4 7.3 51 60-110 14-65 (74)
303 PF12777 MT: Microtubule-bindi 27.1 97 0.0021 25.5 3.9 56 67-122 216-271 (344)
304 cd01282 HTH_MerR-like_sg3 Heli 26.9 2.1E+02 0.0045 19.5 5.2 30 71-100 80-109 (112)
305 PRK09458 pspB phage shock prot 26.8 1.2E+02 0.0026 20.0 3.5 24 70-93 40-63 (75)
306 TIGR01069 mutS2 MutS2 family p 26.8 2.9E+02 0.0064 25.5 7.3 26 69-94 512-537 (771)
307 PF10243 MIP-T3: Microtubule-b 26.8 21 0.00046 31.2 0.0 74 38-111 427-513 (539)
308 TIGR01144 ATP_synt_b ATP synth 26.7 2.3E+02 0.005 19.9 8.1 27 90-116 44-70 (147)
309 PF11853 DUF3373: Protein of u 26.7 64 0.0014 28.4 2.9 28 80-107 32-59 (489)
310 PRK14891 50S ribosomal protein 26.7 17 0.00038 26.4 -0.5 18 54-71 11-28 (131)
311 TIGR01242 26Sp45 26S proteasom 26.6 2E+02 0.0043 23.5 5.7 39 76-114 3-41 (364)
312 PRK13169 DNA replication intia 26.6 2.3E+02 0.005 19.8 7.6 43 1-43 1-43 (110)
313 PRK14471 F0F1 ATP synthase sub 26.5 2.5E+02 0.0054 20.2 7.9 39 73-111 33-71 (164)
314 PF04518 Effector_1: Effector 26.3 2.1E+02 0.0045 24.5 5.8 53 54-106 173-234 (379)
315 PRK07353 F0F1 ATP synthase sub 26.3 2.3E+02 0.005 19.7 6.8 40 73-112 30-69 (140)
316 PF09340 NuA4: Histone acetylt 26.3 1.9E+02 0.0042 18.9 4.6 31 8-38 2-32 (80)
317 PF04129 Vps52: Vps52 / Sac2 f 26.2 3.2E+02 0.007 23.8 7.2 62 66-128 29-97 (508)
318 PF06632 XRCC4: DNA double-str 26.2 3.5E+02 0.0077 22.6 7.1 54 72-125 130-183 (342)
319 cd04776 HTH_GnyR Helix-Turn-He 26.1 2.3E+02 0.0049 19.6 6.0 34 73-106 81-114 (118)
320 PF03915 AIP3: Actin interacti 25.9 2.9E+02 0.0063 23.9 6.7 89 15-103 285-386 (424)
321 PRK08475 F0F1 ATP synthase sub 25.9 2.7E+02 0.0059 20.4 8.2 36 85-120 66-101 (167)
322 KOG0239 Kinesin (KAR3 subfamil 25.7 4.3E+02 0.0094 24.2 8.0 103 7-121 226-328 (670)
323 PF03496 ADPrib_exo_Tox: ADP-r 25.7 31 0.00068 25.5 0.7 36 32-68 52-87 (190)
324 PRK06664 fliD flagellar hook-a 25.6 1.5E+02 0.0033 27.0 5.2 51 77-127 598-648 (661)
325 PF10400 Vir_act_alpha_C: Viru 25.5 1.8E+02 0.004 18.3 5.3 38 61-98 8-47 (90)
326 PF05622 HOOK: HOOK protein; 25.3 24 0.00051 32.0 0.0 41 79-119 308-351 (713)
327 TIGR02680 conserved hypothetic 25.3 6.8E+02 0.015 24.8 14.2 52 9-64 284-335 (1353)
328 PF09278 MerR-DNA-bind: MerR, 25.2 1.6E+02 0.0035 17.6 4.7 31 69-99 33-63 (65)
329 COG2825 HlpA Outer membrane pr 25.2 2.9E+02 0.0064 20.6 6.0 49 56-104 27-76 (170)
330 COG0711 AtpF F0F1-type ATP syn 25.1 2.8E+02 0.006 20.3 7.8 46 73-118 31-83 (161)
331 COG2433 Uncharacterized conser 24.8 3E+02 0.0064 25.2 6.7 36 75-110 425-460 (652)
332 PRK06569 F0F1 ATP synthase sub 24.8 3E+02 0.0064 20.5 6.9 49 71-119 33-81 (155)
333 PF07195 FliD_C: Flagellar hoo 24.7 3.3E+02 0.0071 21.0 6.5 32 72-103 193-224 (239)
334 PTZ00332 paraflagellar rod pro 24.7 5E+02 0.011 23.4 7.9 79 21-104 129-207 (589)
335 PF02646 RmuC: RmuC family; I 24.7 3.8E+02 0.0082 21.7 7.4 52 75-126 243-294 (304)
336 PRK10803 tol-pal system protei 24.6 3.6E+02 0.0077 21.4 7.1 46 4-49 57-102 (263)
337 PF14223 UBN2: gag-polypeptide 24.5 1.4E+02 0.003 20.0 3.8 65 22-89 48-114 (119)
338 PRK14622 hypothetical protein; 24.5 1.4E+02 0.0031 20.5 3.8 20 5-24 5-24 (103)
339 PF04380 BMFP: Membrane fusoge 24.4 94 0.002 20.2 2.8 21 73-93 58-78 (79)
340 PF01166 TSC22: TSC-22/dip/bun 24.3 1.9E+02 0.0042 18.2 4.7 27 74-100 16-42 (59)
341 PF05911 DUF869: Plant protein 24.2 6E+02 0.013 23.8 12.5 40 10-49 598-637 (769)
342 PTZ00446 vacuolar sorting prot 24.2 3.3E+02 0.0072 20.9 8.2 86 22-107 81-175 (191)
343 CHL00118 atpG ATP synthase CF0 24.1 2.8E+02 0.006 20.0 7.9 43 65-110 42-84 (156)
344 PF02050 FliJ: Flagellar FliJ 24.1 2.1E+02 0.0045 18.5 12.4 39 70-108 50-88 (123)
345 PF07820 TraC: TraC-like prote 23.8 90 0.0019 21.4 2.6 20 1-20 43-62 (92)
346 COG1729 Uncharacterized protei 23.7 3.3E+02 0.0073 22.0 6.3 46 4-50 59-104 (262)
347 PRK14623 hypothetical protein; 23.7 1.3E+02 0.0028 21.0 3.5 18 6-23 6-23 (106)
348 PF14197 Cep57_CLD_2: Centroso 23.7 2.1E+02 0.0045 18.3 5.7 35 88-122 28-62 (69)
349 TIGR01843 type_I_hlyD type I s 23.5 4E+02 0.0087 21.6 12.9 25 14-38 143-167 (423)
350 PRK13460 F0F1 ATP synthase sub 23.5 3E+02 0.0065 20.1 7.9 43 73-115 41-90 (173)
351 cd01107 HTH_BmrR Helix-Turn-He 23.5 2.4E+02 0.0052 19.0 6.2 32 71-102 74-105 (108)
352 PF07058 Myosin_HC-like: Myosi 23.5 4.5E+02 0.0097 22.1 10.2 90 17-111 61-161 (351)
353 PF06698 DUF1192: Protein of u 23.5 2E+02 0.0043 18.0 5.5 24 74-97 23-46 (59)
354 cd00472 Ribosomal_L24e_L24 Rib 23.5 20 0.00042 22.1 -0.6 17 54-70 10-26 (54)
355 cd09235 V_Alix Middle V-domain 23.4 4.2E+02 0.009 21.7 9.7 100 24-123 71-175 (339)
356 PF13815 Dzip-like_N: Iguana/D 23.1 2.6E+02 0.0057 19.3 6.2 44 66-109 74-117 (118)
357 PF08181 DegQ: DegQ (SacQ) fam 23.1 1.7E+02 0.0037 17.2 4.7 31 4-34 7-37 (46)
358 PF09403 FadA: Adhesion protei 23.0 2.9E+02 0.0063 19.8 10.5 25 68-92 96-120 (126)
359 PF11414 Suppressor_APC: Adeno 23.0 2.4E+02 0.0052 18.8 5.4 41 72-112 7-47 (84)
360 PRK14627 hypothetical protein; 23.0 1.6E+02 0.0034 20.1 3.8 20 5-24 5-24 (100)
361 PF10174 Cast: RIM-binding pro 22.9 6.3E+02 0.014 23.7 11.5 120 4-123 131-275 (775)
362 COG1777 Predicted transcriptio 22.8 3.9E+02 0.0084 21.1 7.4 48 71-118 117-164 (217)
363 PF10473 CENP-F_leu_zip: Leuci 22.8 3.1E+02 0.0067 20.0 13.2 102 8-117 3-104 (140)
364 PRK14475 F0F1 ATP synthase sub 22.6 3.1E+02 0.0067 20.0 7.6 45 71-115 33-77 (167)
365 PF02403 Seryl_tRNA_N: Seryl-t 22.5 2.5E+02 0.0053 18.7 5.2 31 75-105 70-100 (108)
366 TIGR02833 spore_III_AB stage I 22.4 1E+02 0.0022 22.9 3.0 13 52-64 148-160 (170)
367 cd07682 F-BAR_srGAP2 The F-BAR 22.4 4.3E+02 0.0093 21.5 10.3 41 4-48 126-166 (263)
368 PRK11020 hypothetical protein; 22.4 1.7E+02 0.0036 21.0 3.8 29 69-97 28-56 (118)
369 PLN02320 seryl-tRNA synthetase 22.4 5.5E+02 0.012 22.7 10.3 32 87-118 138-169 (502)
370 PRK13799 unknown domain/N-carb 22.3 2.6E+02 0.0056 24.8 5.9 66 55-125 111-185 (591)
371 PF11285 DUF3086: Protein of u 22.3 3.7E+02 0.008 22.0 6.2 47 78-124 3-50 (283)
372 PF14257 DUF4349: Domain of un 22.2 1.1E+02 0.0024 23.8 3.3 43 70-113 123-165 (262)
373 PF06008 Laminin_I: Laminin Do 22.1 3.9E+02 0.0084 20.9 12.0 48 2-51 121-168 (264)
374 PRK07352 F0F1 ATP synthase sub 22.0 3.2E+02 0.007 19.9 6.3 58 65-122 39-100 (174)
375 COG4709 Predicted membrane pro 22.0 3.8E+02 0.0082 20.8 6.0 61 69-129 2-66 (195)
376 cd06571 Bac_DnaA_C C-terminal 22.0 2.4E+02 0.0051 18.4 4.5 28 57-84 46-73 (90)
377 cd00427 Ribosomal_L29_HIP Ribo 21.8 2E+02 0.0043 17.4 5.7 22 1-22 6-27 (57)
378 PF01763 Herpes_UL6: Herpesvir 21.7 3.7E+02 0.0081 24.2 6.7 57 59-115 350-406 (557)
379 PF04697 Pinin_SDK_N: pinin/SD 21.6 1.3E+02 0.0028 22.0 3.2 37 87-123 4-40 (134)
380 PRK08307 stage III sporulation 21.6 1.1E+02 0.0024 22.8 3.0 13 52-64 149-161 (171)
381 COG2900 SlyX Uncharacterized p 21.5 2.5E+02 0.0054 18.4 6.5 8 103-110 39-46 (72)
382 TIGR03752 conj_TIGR03752 integ 21.4 4.2E+02 0.009 23.4 6.8 41 75-115 69-109 (472)
383 PF13851 GAS: Growth-arrest sp 21.3 3.8E+02 0.0082 20.4 14.0 38 76-113 90-127 (201)
384 cd07590 BAR_Bin3 The Bin/Amphi 21.3 3.9E+02 0.0084 20.9 6.2 46 81-126 13-58 (225)
385 PRK08724 fliD flagellar cappin 21.3 2.6E+02 0.0057 25.7 5.8 33 78-110 616-648 (673)
386 COG4026 Uncharacterized protei 21.3 3.7E+02 0.008 21.7 6.0 38 3-40 151-188 (290)
387 PF12017 Tnp_P_element: Transp 21.3 4.2E+02 0.0091 20.9 6.8 32 72-103 11-42 (236)
388 PF10205 KLRAQ: Predicted coil 21.1 3E+02 0.0065 19.2 7.0 35 4-38 15-49 (102)
389 PRK14626 hypothetical protein; 21.0 1.5E+02 0.0032 20.7 3.4 12 13-24 10-21 (110)
390 KOG0999 Microtubule-associated 21.0 6.6E+02 0.014 23.1 11.4 46 46-91 662-709 (772)
391 KOG0964 Structural maintenance 21.0 8E+02 0.017 24.1 13.3 93 7-121 677-769 (1200)
392 PF05659 RPW8: Arabidopsis bro 21.0 3.4E+02 0.0073 19.7 12.1 100 5-115 10-116 (147)
393 PRK00153 hypothetical protein; 21.0 1.5E+02 0.0033 20.0 3.4 14 69-82 64-77 (104)
394 PRK12765 flagellar capping pro 20.9 2.2E+02 0.0048 25.5 5.2 36 77-112 530-565 (595)
395 KOG3067 Translin family protei 20.8 1.6E+02 0.0035 23.1 3.8 25 5-29 24-48 (226)
396 PF05391 Lsm_interact: Lsm int 20.7 74 0.0016 16.0 1.3 11 1-11 10-20 (21)
397 PF07334 IFP_35_N: Interferon- 20.7 2.4E+02 0.0052 18.6 4.1 20 74-93 2-21 (76)
398 PTZ00454 26S protease regulato 20.6 5.2E+02 0.011 21.8 7.1 46 71-116 21-66 (398)
399 COG0255 RpmC Ribosomal protein 20.6 2.5E+02 0.0054 18.1 5.9 48 1-48 11-62 (69)
400 PRK14621 hypothetical protein; 20.5 1.6E+02 0.0035 20.6 3.5 15 11-25 7-21 (111)
401 PF04423 Rad50_zn_hook: Rad50 20.5 2E+02 0.0043 16.9 4.2 52 35-89 3-54 (54)
402 PRK13590 putative bifunctional 20.5 3.1E+02 0.0067 24.3 6.0 66 55-125 111-185 (591)
403 PRK14474 F0F1 ATP synthase sub 20.4 4.3E+02 0.0094 20.8 8.0 21 95-115 59-79 (250)
404 COG3853 TelA Uncharacterized p 20.3 5.6E+02 0.012 22.0 10.0 108 8-115 130-245 (386)
405 PF03961 DUF342: Protein of un 20.3 5.4E+02 0.012 21.8 9.8 38 75-112 371-408 (451)
406 PF13094 CENP-Q: CENP-Q, a CEN 20.3 3.4E+02 0.0074 19.5 7.0 35 77-111 46-80 (160)
407 PF09726 Macoilin: Transmembra 20.2 6.9E+02 0.015 23.0 13.5 36 7-42 487-522 (697)
408 PF03233 Cauli_AT: Aphid trans 20.1 3.9E+02 0.0085 20.2 6.1 13 56-68 87-99 (163)
409 PF09548 Spore_III_AB: Stage I 20.1 1.2E+02 0.0026 22.4 2.9 13 52-64 148-160 (170)
410 PF06937 EURL: EURL protein; 20.0 5E+02 0.011 21.3 7.3 63 1-64 219-281 (285)
411 cd07588 BAR_Amphiphysin The Bi 20.0 3.4E+02 0.0075 21.0 5.6 43 81-123 14-56 (211)
No 1
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-29 Score=174.07 Aligned_cols=113 Identities=34% Similarity=0.522 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHH
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSE 85 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e 85 (129)
++|+|.++|.+.+++|+++..++.|+.++++.++++.+|.+|+..+.+++++|.|||||||++|++.+..+|+.+.+.++
T Consensus 1 ~~kaf~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~se 80 (114)
T KOG3501|consen 1 MQKAFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSE 80 (114)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 86 SAIAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 86 ~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
++|++|++++.||++++.+.+.||||+++++++
T Consensus 81 e~IeaLqkkK~YlEk~v~eaE~nLrellqs~~~ 113 (114)
T KOG3501|consen 81 EKIEALQKKKTYLEKTVSEAEQNLRELLQSRRA 113 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999876
No 2
>PRK09343 prefoldin subunit beta; Provisional
Probab=99.94 E-value=3.2e-25 Score=158.64 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~ 84 (129)
.+...|++.-.+++.++++++.+.+|++.++++++++++|.+||+.+|+|++||++||+|||+.|+++++.+|+++++.+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 47788888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 85 ESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
+.+|+.|+++.+|+++++++.+.+|++++++
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987
No 3
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=99.91 E-value=1.9e-23 Score=146.84 Aligned_cols=106 Identities=28% Similarity=0.387 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHH
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIA 89 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~ 89 (129)
++++..+++.++++++.+.+|+..++++++++.+|++||+.+|||++||++||+|||..|+++++.+|+++++.++.+|+
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~ 84 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence 55666777779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 90 ALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 90 ~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
.|+++..|+++++.+++.+|++++++
T Consensus 85 ~lek~~~~l~~~l~e~q~~l~~~~~~ 110 (110)
T TIGR02338 85 TLQRQEERLREQLKELQEKIQEALAP 110 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999864
No 4
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-21 Score=139.17 Aligned_cols=109 Identities=24% Similarity=0.322 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHH
Q 045953 9 AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAI 88 (129)
Q Consensus 9 ~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i 88 (129)
..+++-+++++++++++.+..|+.+++.++++++.+++||+.+|+|++||+.||..||..++++++++|+++.+.++.+|
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri 86 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35566667777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 045953 89 AALQASKEYLEKQKAEVESNLAELLQQDP 117 (129)
Q Consensus 89 ~~Lekq~~~Le~~l~e~e~~Lrell~~~~ 117 (129)
++|+++.+.++++++++++.|+.++++..
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i~~~l~~~~ 115 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEIQKALGDAA 115 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999998743
No 5
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=99.88 E-value=5.1e-22 Score=136.56 Aligned_cols=105 Identities=34% Similarity=0.539 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHH
Q 045953 11 QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAA 90 (129)
Q Consensus 11 ~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~ 90 (129)
++++.++..++.++..+.+++..++..++++.+|.+||..+|||+++|++||+|||..|++++.++|+++.+.++.+|++
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 91 LQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 91 Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
|+++.+++++++++++.+|++++++
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998865
No 6
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=99.82 E-value=4.2e-19 Score=123.63 Aligned_cols=104 Identities=23% Similarity=0.316 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHH
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIA 89 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~ 89 (129)
|+.+..+++.++.+++.+.+++..++..+++...|.+||..+|||++||++||.+||..|++++...|+++++.++.+++
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 35677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 90 ALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 90 ~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
.++++.+++++++.+++.+|+++.
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999985
No 7
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.1e-09 Score=73.77 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~ 84 (129)
++++-|++.-.+++.+|..+.......+.++..+.+..+.++||+-+.||++||+-+|..+|+.+-++.......+++-.
T Consensus 2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 85 ESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
+.+|+.++++..-+++.+.+..+.+-.+-
T Consensus 82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q 110 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQEEFEKQREAVIKLQ 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887766655443
No 8
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.09 E-value=2.1e-09 Score=75.97 Aligned_cols=103 Identities=21% Similarity=0.304 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------------------CCchhhhhhh-hhhh
Q 045953 11 QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP-----------------------DNTNTYKSIG-RTFV 66 (129)
Q Consensus 11 ~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~-----------------------~dt~vYk~VG-rmFv 66 (129)
.++...+...+++++.+.+++..+...+.+...+.++|..++ ++.+||..|| ..||
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence 355566666777777777777777777777777788887776 7889999999 9999
Q ss_pred ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
..|.++..+.++++++.++..++.+++....+..++..+..+++++.
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998764
No 9
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=98.89 E-value=6e-08 Score=70.22 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCchhhhhhh---------------------
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP---DNTNTYKSIG--------------------- 62 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~---~dt~vYk~VG--------------------- 62 (129)
...+++++.++...++++..+.+++..+...+.+...+.+.|..++ ++..+|-++|
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Confidence 4567788888888999999999999999999999999999998886 7888999999
Q ss_pred hhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 63 RTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 63 rmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
..||..|.++.++.|+.+++.++..++.++.....+..+++..+..+.++...
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777899999999999999999999999999999999999999999987654
No 10
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=98.35 E-value=1.2e-05 Score=56.95 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--chhhhhhhh-hhh--------------------c
Q 045953 11 QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDN--TNTYKSIGR-TFV--------------------L 67 (129)
Q Consensus 11 ~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~d--t~vYk~VGr-mFv--------------------~ 67 (129)
+++..++...++++..+.+++..+...+.+...+.+.|+.++++ ..++-++|. +|| .
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 46777788899999999999999999999999999999999754 566777766 444 4
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 68 EPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 68 ~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
.|.++.++-|+.+++.++..++.|++....+..++......++
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777777777777777777777766665543
No 11
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.5e-05 Score=56.03 Aligned_cols=95 Identities=14% Similarity=0.214 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHH
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAAL 91 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~L 91 (129)
-+++++....++++.+.+.+..++.++++-.+.++-|..++|+-+.||-||-.+|-.++.+++=.|...++.++.-|+.|
T Consensus 19 ~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l 98 (140)
T KOG4098|consen 19 AVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKL 98 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHH
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHH
Q 045953 92 QASKEYLEKQKAEVE 106 (129)
Q Consensus 92 ekq~~~Le~~l~e~e 106 (129)
..+.....+.|++-+
T Consensus 99 ~~qL~~k~kElnkfk 113 (140)
T KOG4098|consen 99 TDQLVQKGKELNKFK 113 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777777766544
No 12
>PRK14011 prefoldin subunit alpha; Provisional
Probab=98.23 E-value=5.3e-05 Score=55.87 Aligned_cols=109 Identities=12% Similarity=0.212 Sum_probs=87.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhh-h-----------------
Q 045953 3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGR-T----------------- 64 (129)
Q Consensus 3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGr-m----------------- 64 (129)
|++|++.+.+|+. .++++..+..++..+.....+..-+.+-|+.++++..+.-|+|. +
T Consensus 2 ~~elq~~~~~l~~----~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIG 77 (144)
T PRK14011 2 NEELQNQFMALEV----YNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVG 77 (144)
T ss_pred cHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEcc
Confidence 5677776666666 99999999999999999999999999999988777777777766 3
Q ss_pred ---hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 65 ---FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 65 ---Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
||..|.++.++.++.+++.++...++|......+...+.+++..|+.-+++
T Consensus 78 tGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~ 131 (144)
T PRK14011 78 SDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA 131 (144)
T ss_pred CCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888888888888877777777666655443
No 13
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=98.22 E-value=3.7e-05 Score=54.72 Aligned_cols=102 Identities=15% Similarity=0.210 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----------------------Cchhhhhhhh-hhhc
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPD-----------------------NTNTYKSIGR-TFVL 67 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~-----------------------dt~vYk~VGr-mFv~ 67 (129)
+++......+.+++.+.+++..+...+.+...+.+.|..+++ ..+++-++|- .||.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE 82 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence 455666667777777777777777777777777777777754 2445666665 8999
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 68 EPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 68 ~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
.|.++..+-++.+++.++..++.+++....+...++..+..+++..
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~ 128 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ 128 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998754
No 14
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0053 Score=44.32 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESA 87 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~ 87 (129)
+-|.-+-.+.-+...-+...+.++..++-...++.|..++= ..+=--||.+|+.-+.+.+.+.|++..+.++..
T Consensus 23 N~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd------~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~ 96 (131)
T KOG1760|consen 23 NEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDD------EDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKE 96 (131)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccc------cccceehhhhheeccHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555444444443332 333356999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 88 IAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
|..|+...+.+...+.++...|=.-++.
T Consensus 97 i~~les~~e~I~~~m~~LK~~LYaKFgd 124 (131)
T KOG1760|consen 97 IEELESELESISARMDELKKVLYAKFGD 124 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988877555443
No 15
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0047 Score=45.68 Aligned_cols=106 Identities=15% Similarity=0.249 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCchhhhhhhh-h-------------------
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL---PDNTNTYKSIGR-T------------------- 64 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l---~~dt~vYk~VGr-m------------------- 64 (129)
+-+.++-++++..++++..+.+++..+...+.++.-|.+-|+++ +++..+--|||. .
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg 85 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSG 85 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCc
Confidence 34556666666689999999999888888777777766666655 322345555554 3
Q ss_pred -hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 65 -FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 65 -Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
+|..+.++.++-|+++++.++..+..++.....|.......+..++.+-
T Consensus 86 ~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 86 YYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777777777777777766666654
No 16
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=97.35 E-value=0.00064 Score=47.36 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=53.4
Q ss_pred CCchhhhhhhh-hhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 53 DNTNTYKSIGR-TFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 53 ~dt~vYk~VGr-mFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
+..+||-+||- .||..|.++..+-++.+++.++..++.+.++...+..++...+..++++.+
T Consensus 57 ~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 57 DTDKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCCEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555 589999999999999999999999999999999999999999999988764
No 17
>PRK01203 prefoldin subunit alpha; Provisional
Probab=96.89 E-value=0.045 Score=39.82 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCchhhhhhhh---------------------hhhcc
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP--DNTNTYKSIGR---------------------TFVLE 68 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~--~dt~vYk~VGr---------------------mFv~~ 68 (129)
++..++...++++..+.+|+.++.....+..-+.+-|..++ ++..+.-|+|. .||..
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK 83 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE 83 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence 45566677888888888888888888888888888887763 45555555554 36777
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
|.++-++.|+++++.++.-+.........++..+.++-
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666666666555555555555555443
No 18
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=96.24 E-value=0.058 Score=37.17 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhh
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTL--EELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKD 83 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~--~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~ 83 (129)
+...|+.++.++....++++.+.+++.-.+..+.++.... ..+-..-++.=|-.+++. +....++-++.++.+++.
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~e--a~~~Le~~~e~le~~i~~ 81 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEE--ARTELKERLETIELRIKR 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHH--HHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666655555555555432 111122223333333333 234445555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045953 84 SESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
++..++.++++-..+..++.+.
T Consensus 82 l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 82 LERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665554
No 19
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.19 E-value=0.028 Score=40.40 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhh---hhhhhhccChH-----------HHH---
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS---IGRTFVLEPKS-----------VLM--- 74 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~---VGrmFv~~~k~-----------~i~--- 74 (129)
+....+...+.+++.+..+++.+...+....-+..++...-+.-....+ -+.+||.-+.. .++
T Consensus 3 ~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~l 82 (140)
T PRK03947 3 ESEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSL 82 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEc
Confidence 4566788899999999999999999999999999999887544444442 23355544422 222
Q ss_pred -------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH
Q 045953 75 -------NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQ 122 (129)
Q Consensus 75 -------~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~ 122 (129)
..+.+-++.++.+++.|++..+.++..+.....++.++.+.=..++++
T Consensus 83 G~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 83 GAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999999999998887655555444
No 20
>PRK09343 prefoldin subunit beta; Provisional
Probab=96.12 E-value=0.11 Score=36.94 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHH
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAAL 91 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~L 91 (129)
.|+.+++..-.+++.+..++..+...+...+..+.|....-+.-.--.+=+++|-..-.-=|..+..+-.+.++.+++.+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 46777777777777888888888877777777777777664443333344567777777777777777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhH
Q 045953 92 QASKEYLEKQKAEVESNLAELLQQDPGL 119 (129)
Q Consensus 92 ekq~~~Le~~l~e~e~~Lrell~~~~~~ 119 (129)
+...+.|+++.+.++.++.++-.+=..+
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877777765443333
No 21
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=95.93 E-value=0.13 Score=35.73 Aligned_cols=95 Identities=14% Similarity=0.230 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 045953 18 IENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEY 97 (129)
Q Consensus 18 ~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~ 97 (129)
.....+++.+..++..+...+...+....|...+-+.-.--.+=+++|...-.-=+..+..+-...++.+++.++...+.
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~ 85 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKT 85 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555554442222222223445555555445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 045953 98 LEKQKAEVESNLAEL 112 (129)
Q Consensus 98 Le~~l~e~e~~Lrel 112 (129)
|+++.+.++.++.++
T Consensus 86 lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 86 LQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555543
No 22
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.024 Score=41.90 Aligned_cols=110 Identities=21% Similarity=0.263 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhh---hhhhccChHHHH-HHHHH----------
Q 045953 14 KGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIG---RTFVLEPKSVLM-NEQEQ---------- 79 (129)
Q Consensus 14 q~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VG---rmFv~~~k~~i~-~eL~e---------- 79 (129)
+..+.++-.+++.+..|++.+.+++-.+..+..|+...-++-...++.| .++|.-.....+ ..++.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence 4567789999999999999999999999999999999988889999999 566665433221 11111
Q ss_pred ---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 80 ---RLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 80 ---~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
-..++++-|+.|+++.+.|.+...+++.+|.++-+....+.+++
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345566666666666666666666666666655544444443
No 23
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=94.79 E-value=0.25 Score=33.22 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~ 84 (129)
++...|.+++.++.....++..+..++...+..+.+......+-.-.-.=.++|-...+--+.....+-.+.++..++.+
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999888887772222112346666677778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045953 85 ESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~e 104 (129)
+..++.++++.+.++..+.+
T Consensus 82 ~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 24
>PRK11637 AmiB activator; Provisional
Probab=94.61 E-value=2.1 Score=36.17 Aligned_cols=42 Identities=33% Similarity=0.330 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
.-++.+..+++.++.+|..++.+...++..++..+..+...+
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666666666665555555443
No 25
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=94.51 E-value=0.15 Score=35.49 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 045953 20 NTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP 52 (129)
Q Consensus 20 ~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~ 52 (129)
...+++.+..++..+...+....-...|+..+-
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~ 36 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAK 36 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555444444444444443
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=94.28 E-value=1.7 Score=39.47 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~ 84 (129)
++...+.++..+.......+..+...+..+...+...+-.+++|....|.-| .||+=+...-+..+.+++...++.+
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp---~c~~~L~~~~~~el~~~~~~ei~~l 464 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP---VCGRELTEEHRKELLEEYTAELKRI 464 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCcCCchhHHHHHHHHHHHHHHH
Confidence 3445555666666667777777777777777777788877777776544334 4888887777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045953 85 ESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~e~ 105 (129)
+.++..|.++...++..++..
T Consensus 465 ~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 465 EKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777666666543
No 27
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=94.13 E-value=0.35 Score=30.23 Aligned_cols=41 Identities=27% Similarity=0.453 Sum_probs=38.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
+++|+.+...++..+.+++++.+.+...+++.++++++++.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999998873
No 28
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=93.19 E-value=0.48 Score=33.24 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHH--H---------------------H
Q 045953 18 IENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSV--L---------------------M 74 (129)
Q Consensus 18 ~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~--i---------------------~ 74 (129)
.++..+++.+..++..+...+.....+..++...-+--..+.+-...++.-|... + .
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 4578889999999999999999999999999887533333322111222222211 1 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
..+++-++.++.+++.|+++.+.|++.+.+...++..+.
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888888888888888877654
No 29
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=92.46 E-value=0.86 Score=32.07 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhh----------hhh-hhhccChHH-------------HH
Q 045953 19 ENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS----------IGR-TFVLEPKSV-------------LM 74 (129)
Q Consensus 19 ~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~----------VGr-mFv~~~k~~-------------i~ 74 (129)
....+++.+..++..+...+........|+..+-+.-..+.. +|. +|+.....+ +.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE 82 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence 467778888888888888888888888888877655555554 222 444443221 23
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
..+.+-.+.++.+++.|++..+.|++.+.....++..+..
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888888888877653
No 30
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=2.1 Score=30.74 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh------hhccChHHHHHHHHHHHhhHHHHHHH
Q 045953 17 MIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT------FVLEPKSVLMNEQEQRLKDSESAIAA 90 (129)
Q Consensus 17 ~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm------Fv~~~k~~i~~eL~e~~~~~e~~i~~ 90 (129)
+...-.+++.+..+++.+-..+.-++.-+.|+.+. -.-++++ |-..---=+..+.++-.+.+++++..
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~a------l~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~ 81 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKA------LEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKET 81 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666664433 2223322 22222222334455556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045953 91 LQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 91 Lekq~~~Le~~l~e~e~~Lrel 112 (129)
|+.+.+.|+++-+.++..|.++
T Consensus 82 Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 82 LELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 31
>PRK02224 chromosome segregation protein; Provisional
Probab=92.12 E-value=2.5 Score=38.54 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHH
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAAL 91 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~L 91 (129)
+....+.+++..+..+...+..++..+......++++..+=.+..+ --||+-|=..+...+++++...++.+...+..|
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~C-p~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 487 (880)
T PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKC-PECGQPVEGSPHVETIEEDRERVEELEAELEDL 487 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666666666666532112233 349998877777788888888888887777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045953 92 QASKEYLEKQKAEVESN 108 (129)
Q Consensus 92 ekq~~~Le~~l~e~e~~ 108 (129)
+.....+++.++.++..
T Consensus 488 e~~l~~~~~~~e~l~~~ 504 (880)
T PRK02224 488 EEEVEEVEERLERAEDL 504 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776666544433
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.87 E-value=2.5 Score=36.29 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAY 42 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~ 42 (129)
+..+..+..+++.++..+...+..++.......
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~ 333 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554444444333
No 33
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.07 E-value=4 Score=35.06 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=22.4
Q ss_pred hhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045953 59 KSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKE 96 (129)
Q Consensus 59 k~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~ 96 (129)
-.||+.|--. +.....|.+.+..++.+++.++....
T Consensus 288 p~C~~~~~~~--~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 288 PTCTQQISEG--PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred CCCCCcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777544 66666666666666666666665555
No 34
>PRK01156 chromosome segregation protein; Provisional
Probab=90.72 E-value=11 Score=34.66 Aligned_cols=101 Identities=13% Similarity=0.194 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESA 87 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~ 87 (129)
.-+.++..++.++...+..+...+..++..+.....+..+|+ .. ++--.||+-.=..-+..+++++..+++.++.+
T Consensus 409 ~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~~---~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~ 484 (895)
T PRK01156 409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQ---SVCPVCGTTLGEEKSNHIINHYNEKKSRLEEK 484 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC---CCCCCCCCcCChhhHHHHHHHHHHHHHHHHHH
Confidence 345667777777888888888888888888888777777777 32 23333555333333556666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 88 IAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
++.|++....+...++..+..+..+
T Consensus 485 i~~l~~~~~~l~~~~~~~~~~~~~l 509 (895)
T PRK01156 485 IREIEIEVKDIDEKIVDLKKRKEYL 509 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666555555443
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.27 E-value=8.2 Score=35.19 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCCchhhhhhhhhhhccChHHHHHHH
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL---------PDNTNTYKSIGRTFVLEPKSVLMNEQ 77 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l---------~~dt~vYk~VGrmFv~~~k~~i~~eL 77 (129)
++--.+||.++..+.+.-+.=++.+.++|+.++.-.-...+|++- .+....-++++.. ...+.+--+.+
T Consensus 466 r~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~--~~~r~e~~e~~ 543 (697)
T PF09726_consen 466 RQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQA--QATRQECAESC 543 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccc--hhccchhHHHH
Confidence 344445555555555555555555666666665544444444332 2222333333322 33445666678
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
+.+...+|.+++.|....+--+.++..++.+++++-.
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888765543
No 36
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.44 E-value=8.5 Score=29.87 Aligned_cols=82 Identities=10% Similarity=0.177 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhh
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKD 83 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~ 83 (129)
+..+-.+-+++.++.+++.+++.++.+..+...+++..--. .+....+|+++...
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~-------------------------~~~~~~~L~~~n~~ 143 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ-------------------------SDSVINGLKEENQK 143 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHH
Confidence 44555666667777777777766665544333322221100 23335556666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 84 SESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
+...+..+.++...++.++.+.+.+++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666666666666666665543
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.18 E-value=9.9 Score=30.31 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh-hhccCh----HHHHHHHHH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT-FVLEPK----SVLMNEQEQ 79 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm-Fv~~~k----~~i~~eL~e 79 (129)
.+.+.+.+++..+-+...++......++.....+..++..+ ..+ .+.+-|...+.- .+..+. .+-+.+|.+
T Consensus 42 ~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl---~~v-~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~ 117 (239)
T COG1579 42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL---SAV-KDERELRALNIEIQIAKERINSLEDELAELME 117 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555444444433 444 467788888873 333322 222333444
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.+.++..+..+..+...+++.+.+.+..+.+
T Consensus 118 ~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~ 149 (239)
T COG1579 118 EIEKLEKEIEDLKERLERLEKNLAEAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=88.21 E-value=18 Score=32.91 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=8.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASK 95 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~ 95 (129)
..+..+...++..+..++...
T Consensus 310 ~~l~~~~~~l~~~~~~l~~~l 330 (880)
T PRK03918 310 REIEKRLSRLEEEINGIEERI 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333343333333
No 39
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.77 E-value=11 Score=33.58 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhh--hccChHHHHHHHHHHHhhH
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTF--VLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmF--v~~~k~~i~~eL~e~~~~~ 84 (129)
.+.|.-+-.++-..+.+...+..++...+..-...+.+.+.-..|.+|.+.|++.=.-+ .....+..++.|.+.++.-
T Consensus 227 ~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~k 306 (581)
T KOG0995|consen 227 EKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEK 306 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45566667778888888999999999888888888888888888999999998865543 4455788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045953 85 ESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~e 104 (129)
++++++|..+...|.++++.
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999998888887753
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.68 E-value=13 Score=35.96 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNT 55 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt 55 (129)
..+++-|+++..+-......+..+.+.+..++.++........|+.+.|++.
T Consensus 387 ~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 387 ESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA 438 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence 3577889999999999999999999999999999999999999999998764
No 41
>PRK02119 hypothetical protein; Provisional
Probab=87.16 E-value=5 Score=26.10 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=34.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSM 126 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~~ 126 (129)
..+++++..+|.++.=.+...+.|...+-..+..|..+-+.=..|+++|.+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4466677777777776666666677767666766666666666666666553
No 42
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.13 E-value=15 Score=29.85 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.+++.++++...++..-..++.+.+.|..-..+.+..+..|
T Consensus 148 ~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L 188 (265)
T COG3883 148 KILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSL 188 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444444444444444433
No 43
>PRK11637 AmiB activator; Provisional
Probab=87.10 E-value=17 Score=30.63 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
...+++++......+......|+.+...++..+.+.+....++......
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777776666666666554433
No 44
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.03 E-value=15 Score=29.99 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=19.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
+..++.+....+..|....+....++.++..+...+.++-..
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555544444444444444444444444333
No 45
>PRK09039 hypothetical protein; Validated
Probab=86.74 E-value=17 Score=30.17 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTL 45 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~ 45 (129)
..+.+.....-+.+.++..+.+||+.+...+..++-.+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666666666665533333333
No 46
>PRK04406 hypothetical protein; Provisional
Probab=86.70 E-value=6.2 Score=25.87 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
++.+.+++..+|.++.=.+...+.|+..+-+.+..|..+-..=..|.++|.+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777776666666666666666666666666555566666644
No 47
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.82 E-value=14 Score=28.22 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQ 50 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~ 50 (129)
-|...+.++...+..+.+.+..+.+....+++.+..+.-...++..
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK 72 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999999888888776666554
No 48
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=85.10 E-value=22 Score=29.91 Aligned_cols=111 Identities=15% Similarity=0.092 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCchhhhhhhhhhhccChHHHHHH
Q 045953 3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL------PDNTNTYKSIGRTFVLEPKSVLMNE 76 (129)
Q Consensus 3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l------~~dt~vYk~VGrmFv~~~k~~i~~e 76 (129)
|.+|++-+.|++.-..+++-++..+..++...+..+...+.++.+-..- -=+.+.|+|-....- +..
T Consensus 246 n~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcr----D~~--- 318 (384)
T PF03148_consen 246 NAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCR----DPP--- 318 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHH----hhH---
Confidence 4566677777777777777777777777777777777777776665421 002344444443322 222
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
...+-.++..|......|..++.+++.+++.+......|-..|.
T Consensus 319 ----q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 319 ----QYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344555555666667777777777777777766666654
No 49
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=83.96 E-value=16 Score=27.38 Aligned_cols=86 Identities=24% Similarity=0.273 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953 25 KQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 25 ~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e 104 (129)
..|.+|+..++-+-++..-...||+.+.+ |.-.-+..+..+++..+-+++.|-..-..=++.+++
T Consensus 52 ekVq~~LgrveEetkrLa~ireeLE~l~d---------------P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEyke 116 (159)
T PF04949_consen 52 EKVQAQLGRVEEETKRLAEIREELEVLAD---------------PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKE 116 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhcc---------------chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34556677777778888888888887742 444556678888999999999988888888888888
Q ss_pred HHHHHHHHHcCChhHHHHHHh
Q 045953 105 VESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 105 ~e~~Lrell~~~~~~~~~~~~ 125 (129)
....+.|.-..+..|+-.||.
T Consensus 117 alea~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 117 ALEAFNEKNKEKAQLVTRLME 137 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888778888888874
No 50
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=83.94 E-value=6.1 Score=27.49 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=25.6
Q ss_pred hccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953 66 VLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 66 v~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l 102 (129)
|..+++.+++=|.-+++-...-|.+|+|+...-+.++
T Consensus 62 i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kl 98 (99)
T PF13758_consen 62 ITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENKL 98 (99)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5567777777777777777777777777666555543
No 51
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.86 E-value=20 Score=34.72 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=22.3
Q ss_pred HHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q 045953 75 NEQEQRLKDSESAIAAL-------QASKEYLEKQKAEVESNLAELLQQDPGLAQ 121 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~L-------ekq~~~Le~~l~e~e~~Lrell~~~~~~~~ 121 (129)
++|.+.+..++..+..+ ......++..+..++..+.++-..+-.++.
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~ 878 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 555555555555554444443333333433
No 52
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=83.84 E-value=18 Score=27.91 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQ 50 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~ 50 (129)
-|...+.+|...+....+.+..+.+....+++.+..+.-...++..
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~ 73 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQE 73 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999998888888877766665543
No 53
>PRK02793 phi X174 lysis protein; Provisional
Probab=83.00 E-value=9.3 Score=24.74 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=25.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
+++++..+|.++.=.+...+.|..-+-+.+..|..+-..=..|.++|.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555444444445555544
No 54
>PRK04325 hypothetical protein; Provisional
Probab=82.88 E-value=9.2 Score=24.90 Aligned_cols=48 Identities=25% Similarity=0.151 Sum_probs=21.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
+.+++..+|.++.=.+...+.|..-+-+.+..|..+-..=..|..+|.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444433334444443
No 55
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=82.33 E-value=31 Score=32.18 Aligned_cols=62 Identities=8% Similarity=0.229 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhcc
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLE 68 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~ 68 (129)
+++++...+|-....+-++.+.....++..+++..-++.+++.+-+.+ ..+|++||.+||-.
T Consensus 202 ~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~---~~~w~pvgdl~ids 263 (966)
T KOG4286|consen 202 EEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVI---KGSWQPVGDLLIDS 263 (966)
T ss_pred HHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh---hhccccHHHHHHhH
Confidence 355566666777777888889999999999999999999999988876 35899999999854
No 56
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=82.15 E-value=43 Score=31.08 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=13.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
+..+...+..++..++.+...+...+.++...+
T Consensus 453 l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l 485 (1164)
T TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343444444444444444444444444333
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.71 E-value=25 Score=28.07 Aligned_cols=29 Identities=7% Similarity=0.185 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045953 20 NTGKMKQVQNQMRNKEGEKKRAYLTLEEL 48 (129)
Q Consensus 20 ~qqql~~v~~Q~~~~e~~~r~~~lT~~EL 48 (129)
....+..+...+..++.+....+..+.++
T Consensus 43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~ 71 (239)
T COG1579 43 LNKALEALEIELEDLENQVSQLESEIQEI 71 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 58
>PRK04863 mukB cell division protein MukB; Provisional
Probab=81.35 E-value=61 Score=32.31 Aligned_cols=103 Identities=14% Similarity=0.214 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHH----------HH
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVL----------MN 75 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i----------~~ 75 (129)
+++.+.+.+.++.+..+.+..+...+..++..+.+.+..+.+|.- |.+...=...- ..++++ .+
T Consensus 1004 areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~-~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~ 1077 (1486)
T PRK04863 1004 AREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGV-PADSGAEERAR-----ARRDELHARLSANRSRRN 1077 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccHHHHHH-----HhHHHHHHHHHHhHHHHH
Confidence 345566666666666666666667777777777777777777763 33332211110 012222 23
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
.|......++.+|+.|.++...+++.+++....|..+-.
T Consensus 1078 ~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~ 1116 (1486)
T PRK04863 1078 QLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666555555554443
No 59
>PRK00295 hypothetical protein; Provisional
Probab=81.32 E-value=10 Score=24.27 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=17.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
+.+|+.++.-.+.-|..|......-++.+..++.+++.+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444433
No 60
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.74 E-value=8.1 Score=24.33 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCchhhh
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNK-EGEKKRAYLTLEELRQLPDNTNTYK 59 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~-e~~~r~~~lT~~EL~~l~~dt~vYk 59 (129)
++..+.+++.++..++.....+..++..+ ...-..-+.+.+.+.=..||..+|+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~v~~ 76 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEIVFK 76 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCEEEe
Confidence 34445555555555555555555555555 3333333455556666666666664
No 61
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=80.62 E-value=12 Score=31.12 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 37 EKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 37 ~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+++++.--++||..+.+ .++.+..+|+...+.++.+|..|+.+..-+-+.-++++.+-||
T Consensus 6 dk~ri~~li~~la~~~~---------------~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyre 65 (328)
T PF15369_consen 6 DKRRIANLIKELARVSE---------------EKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRE 65 (328)
T ss_pred HHHHHHHHHHHHHHhhh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35666666778877753 6888999999999999999999999999888888888877764
No 62
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=80.07 E-value=12 Score=23.95 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=27.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
+..++.+.+..+.++..|+......+...++...+|.++-..
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666667777777777777666666666665543
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.02 E-value=55 Score=31.51 Aligned_cols=91 Identities=14% Similarity=0.289 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHH
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSE 85 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e 85 (129)
+++.|......+.+...+++.+...+.........++.+...+..-. -. +...-..+..++.+.++
T Consensus 342 ~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~-----~~---------~~~~~~~e~e~k~~~L~ 407 (1074)
T KOG0250|consen 342 ARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT-----NN---------ELGSELEERENKLEQLK 407 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hh---------hhhhhHHHHHHHHHHHH
Confidence 34555555555666666666666666666666666666655554321 11 22233444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 86 SAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 86 ~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
.++++++.+...|...+++....++
T Consensus 408 ~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 408 KEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444444
No 64
>PRK02224 chromosome segregation protein; Provisional
Probab=79.03 E-value=52 Score=30.10 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=10.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
.+++..++.++..+......++..+.+++
T Consensus 264 ~~~i~~~e~~~~~l~~~i~~~~~~~~~le 292 (880)
T PRK02224 264 RETIAETEREREELAEEVRDLRERLEELE 292 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.81 E-value=28 Score=26.96 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQ 121 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~ 121 (129)
-+....++.++.+..+..+..|+.+...|.+++..++..++.+-.....+.+
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888888889999999999999999988888876555444443
No 66
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.38 E-value=51 Score=29.63 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhh-hccChHHHHHHHHHHHhhH
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTF-VLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmF-v~~~k~~i~~eL~e~~~~~ 84 (129)
|++.+.++..++......+..+...+.++..+.........+++ .-|+--.+++ ++.+.+.-+..|+.-++..
T Consensus 333 l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le------~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 333 LQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE------EELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 44444444444444444444455555555555555555555443 3455555554 5667778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 85 ESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
..++..|..+=+....-+.+--..|++...
T Consensus 407 ~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~ 436 (594)
T PF05667_consen 407 EQRLVELAQQWEKHRAPLIEEYRRLKEKAS 436 (594)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 999999988877777777666666665544
No 67
>PRK00736 hypothetical protein; Provisional
Probab=78.07 E-value=15 Score=23.45 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=16.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
+.+|+.++.-.+.-|..|..-...-++.+..++.+++
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~ 43 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLD 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443333
No 68
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.77 E-value=32 Score=27.03 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhh-----hhhhhhh--hccChHHHHHHHH
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTY-----KSIGRTF--VLEPKSVLMNEQE 78 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vY-----k~VGrmF--v~~~k~~i~~eL~ 78 (129)
|...+.+++..+....+.+..+......+++.+..+......+..- +..= ...-+.+ -..+.++....++
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~---A~~Al~~g~E~LAr~al~~~~~le~~~~~~~ 105 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK---AELALQAGNEDLAREALEEKQSLEDLAKALE 105 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888899999999999999888888888888887777666542 1111 1122211 1223334444444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 79 QRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.....+...+..|+++...|+.++.++......+
T Consensus 106 ~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 106 AELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555554444433
No 69
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.61 E-value=32 Score=26.90 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhh
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKD 83 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~ 83 (129)
+.+.+...+....-..+|.+++....+...+..+++....-.+-|.. |. ...+..++.++.++..
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~-------~~--------~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEV-------YN--------EQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH--------HHHHHHHHHHHHHHHH
Confidence 45667777777778888899999999999888888777666555554 21 2456677888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 84 SESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
++.+|..++.....|.--+.+.-+.|...+..
T Consensus 89 L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~ 120 (251)
T PF11932_consen 89 LEQQIEQIEETRQELVPLMEQMIDELEQFVEL 120 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888888888888888887764
No 70
>PRK14011 prefoldin subunit alpha; Provisional
Probab=77.53 E-value=16 Score=26.83 Aligned_cols=100 Identities=12% Similarity=0.147 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccCh-----------HH----------HH
Q 045953 16 RMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPK-----------SV----------LM 74 (129)
Q Consensus 16 k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k-----------~~----------i~ 74 (129)
++.+..-.|+.+.+|++.+...+..+..+..++..--+.-....+=..++|.-.- +. +.
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VE 83 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLE 83 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEE
Confidence 3445667789999999999999999999988875542111111111234554222 11 23
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
..+.+-++.++.+++.|++....|...+.+....++++-.-
T Consensus 84 k~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 84 KDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888877643
No 71
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.67 E-value=54 Score=29.10 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhc--cChHHHHHHHHHHHhhHHHHHHHHHH
Q 045953 16 RMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVL--EPKSVLMNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 16 k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~--~~k~~i~~eL~e~~~~~e~~i~~Lek 93 (129)
....++.+...+-.++.....--.-++-+.+---.+.+|...|.+.-+.+=. ...+..++.|...++.-|+.|+.|..
T Consensus 272 ~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~ 351 (622)
T COG5185 272 DIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQS 351 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445555555444433333333333344456677788776554432 34677899999999999999999999
Q ss_pred HHHHHHHHHHHH---HHHHHHHHcCChhHHHHHHhcc
Q 045953 94 SKEYLEKQKAEV---ESNLAELLQQDPGLAQQIMSMS 127 (129)
Q Consensus 94 q~~~Le~~l~e~---e~~Lrell~~~~~~~~~~~~~~ 127 (129)
+...|..++... -+++..|.+.+-.|-++|-..|
T Consensus 352 ~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~ 388 (622)
T COG5185 352 NIDELHKQLRKQGISTEQFELMNQEREKLTRELDKIN 388 (622)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999888653 3556666666666666665544
No 72
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=76.57 E-value=67 Score=30.53 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCCchhhhhhhhhhhccChHHHHHHH
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQ--------LPDNTNTYKSIGRTFVLEPKSVLMNEQ 77 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~--------l~~dt~vYk~VGrmFv~~~k~~i~~eL 77 (129)
++-++.+||.+.....-+++.+..-++.++.++++++.-++++.. |..-+.-.-.+|.. +.++...+.++
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~--L~nk~~~lt~~ 181 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGED--LHDKNEELNEF 181 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHH--HhhhhhHHhHH
Confidence 445677777777777777777777777777777776665554432 22222223344444 46788888999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e 104 (129)
.....+.-.++..+.++..|+-+++++
T Consensus 182 ~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 182 NMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888899888888888887765
No 73
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=75.24 E-value=0.88 Score=31.98 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=8.9
Q ss_pred chhhhhhhhhhhcc
Q 045953 55 TNTYKSIGRTFVLE 68 (129)
Q Consensus 55 t~vYk~VGrmFv~~ 68 (129)
.++|+++| +-+-.
T Consensus 64 lkLYrsLG-I~~e~ 76 (118)
T PF08286_consen 64 LKLYRSLG-IELEY 76 (118)
T ss_dssp HHHHHHCC-EEEEC
T ss_pred HHHHHhCc-EEEEe
Confidence 37899999 54433
No 74
>PRK10698 phage shock protein PspA; Provisional
Probab=74.64 E-value=38 Score=26.34 Aligned_cols=106 Identities=12% Similarity=0.117 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhcc-------ChHHHHHHH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLE-------PKSVLMNEQ 77 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~-------~k~~i~~eL 77 (129)
-|...+++|...+.+..+.+..+.+....+++.+..+.-...+...= +..=-.-|+=-+.. ....-...|
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k---A~~Al~~G~EdLAr~AL~~K~~~~~~~~~l 104 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK---AELALRKEKEDLARAALIEKQKLTDLIATL 104 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999998888888888777666655432 11111122211111 133344444
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
+...+.....+..|..+...|+.++.+....-..++
T Consensus 105 ~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 105 EHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544444443
No 75
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.52 E-value=59 Score=28.49 Aligned_cols=33 Identities=6% Similarity=0.091 Sum_probs=18.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 81 LKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 81 ~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
...+++....++......+.++.+++++||+++
T Consensus 416 ~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 416 RGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 334444444444455555666666666666665
No 76
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.22 E-value=65 Score=28.77 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQ 50 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~ 50 (129)
..+.+.+.++..++.+.+.++..+..++..++.++..++-.+.++..
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888888888888777777766666654
No 77
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=74.13 E-value=58 Score=28.16 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 22 GKMKQVQNQMRNKEGEKKRAYLTL 45 (129)
Q Consensus 22 qql~~v~~Q~~~~e~~~r~~~lT~ 45 (129)
+++..+...+..+++.++...-..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~ 61 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQR 61 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 78
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.70 E-value=17 Score=23.14 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=18.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
+.+|+.++.-.+..|..|......-++.+..++..++.+.
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445444444444444444444444443
No 79
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=73.57 E-value=26 Score=24.16 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYL--EKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~L--e~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
.+=++.+.++....+.|+..+|.+-.+| ...+.+++-.|.++=+.-+++..+|.+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445667777777888888888888887 777777777777766666666666543
No 80
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=73.14 E-value=39 Score=27.16 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHH
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAAL 91 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~L 91 (129)
..+.++..+.++++.+...+..++..+...+--++-++.-.++...|. +.+ ..-+......++.+..=+.+|..|
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~--~~~---~~~~~~~~~~de~I~rEeeEIreL 251 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDD--EES---EESSEDSVDTDEDIRREEEEIREL 251 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--ccc---ccccccchhHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888877777777766544433332 222 222223334445555566677777
Q ss_pred HHHHHHH
Q 045953 92 QASKEYL 98 (129)
Q Consensus 92 ekq~~~L 98 (129)
+.++..|
T Consensus 252 E~k~~~L 258 (259)
T PF08657_consen 252 ERKKREL 258 (259)
T ss_pred HHHHHhc
Confidence 7766554
No 81
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=73.06 E-value=41 Score=26.25 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhh--hhhccChHHHHHHHHHHHhhH
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGR--TFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGr--mFv~~~k~~i~~eL~e~~~~~ 84 (129)
.+.+.-+.......+..+......+..+++.+..+.-|..+|..+ +|+.++. -||..|.|-..++=.+++..+
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~-----m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L 136 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL-----MEQMIDELEQFVELDLPFLLEERQERLARL 136 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 344444455555555555666666666666666666666666543 6666666 478888777766544444433
No 82
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.01 E-value=93 Score=30.28 Aligned_cols=104 Identities=11% Similarity=0.048 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~ 84 (129)
++...+..+..++..+...+..+......+...+...+-...++...- ..+=..+ =...+-..-+++|.+....+
T Consensus 826 ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~k--lkl~~~l---~~r~~le~~L~el~~el~~l 900 (1311)
T TIGR00606 826 QVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK--LQIGTNL---QRRQQFEEQLVELSTEVQSL 900 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555565555555544444443221 1111111 13334444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 85 ESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
..+|+.++....-+...+...+..+.++.
T Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 901 IREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 55555555555555555555555554444
No 83
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=72.17 E-value=24 Score=25.59 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=42.4
Q ss_pred hhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 60 SIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 60 ~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
.+|.+||-..-.++..-.++-...-++-|..|+....+|...+-..|+-.
T Consensus 59 ~~~~~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y 108 (126)
T PF13118_consen 59 ALDPMFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELY 108 (126)
T ss_pred ccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999888877776655544
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=71.21 E-value=37 Score=24.68 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL 51 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l 51 (129)
+.+....+.+++..+..+..++..++..+..+.-.+.+-.+.
T Consensus 30 ~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 30 NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455556666666666666666666666666666665554
No 85
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=70.74 E-value=66 Score=27.37 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=23.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
...|......++.++..++.+...|..++++.+..+..
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 349 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLLRT 349 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666766666666666666555543
No 86
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=70.51 E-value=35 Score=28.52 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL 51 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l 51 (129)
+.|..++..+.+..+.|..++.+...+...++..+-++..++.-
T Consensus 322 ~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 322 KTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999999999999888888888753
No 87
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=70.33 E-value=18 Score=24.27 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=24.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcC
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVES-NLAELLQQ 115 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~-~Lrell~~ 115 (129)
+.+...++.+..+|..++.+.+-|+.+..+.+. .|-.+|++
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~ 45 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRS 45 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666667777777777777766666654 23344443
No 88
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=69.94 E-value=50 Score=25.68 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCchhh-hhhhhhhhc-cChHHHHHHHHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQ----LPDNTNTY-KSIGRTFVL-EPKSVLMNEQEQRL 81 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~----l~~dt~vY-k~VGrmFv~-~~k~~i~~eL~e~~ 81 (129)
..+.+...++.++.+++..+...+...+.-.-.++-...+|.. +..+-+-+ -+.|+++-. .....=+..|..+.
T Consensus 106 ~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 106 RRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555554444443333333333332 11111111 123334433 33555567788888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 82 KDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 82 ~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
+.++.+....++....|++.+..++..|...-.....+...|
T Consensus 186 keaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 186 KEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888776555544444444
No 89
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.75 E-value=33 Score=24.15 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=20.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
..+.++.....|..+.......+.+++.+|-++..+
T Consensus 38 qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 38 QKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555556666666666666666666655544
No 90
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=69.66 E-value=13 Score=22.34 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=11.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYL 98 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~L 98 (129)
.++.+++.++..|..|++++..|
T Consensus 16 ~IEqkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444
No 91
>PRK00846 hypothetical protein; Provisional
Probab=68.79 E-value=31 Score=22.83 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=19.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
+.+++..+|.++.=.+...+.|+..+...+..|..+-..=..|..+|.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433333334444443
No 92
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.83 E-value=91 Score=27.88 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASK-------EYLEKQKAEVESNLAELLQQDPGLAQQIMSM 126 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~-------~~Le~~l~e~e~~Lrell~~~~~~~~~~~~~ 126 (129)
+++....+|+.+...+..+++...... ..|..++..++..+..--+..-.|+.+|.+.
T Consensus 252 elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~ 316 (546)
T PF07888_consen 252 ELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDA 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445544444444322222 2333333333333333333334555555543
No 93
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.22 E-value=1.4e+02 Score=29.86 Aligned_cols=45 Identities=7% Similarity=0.136 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
-.....+..++.+..+..+..++.+...++..++..+.....++.
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~ 484 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK 484 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666677777777766666666666666665543
No 94
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.06 E-value=49 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 16 RMIENTGKMKQVQNQMRNKEGEKK 39 (129)
Q Consensus 16 k~~~~qqql~~v~~Q~~~~e~~~r 39 (129)
.+...+++++....++..++....
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~ 105 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQ 105 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 95
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.34 E-value=18 Score=27.33 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=18.9
Q ss_pred Cchhhhhhhhh-hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 54 NTNTYKSIGRT-FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 54 dt~vYk~VGrm-Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
-+.+|++.|.+ .-+.+...-...++.........|..|+.....|+..+.+....|++.=
T Consensus 83 Lael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 83 LAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888874 3444455555566666666666666666666666666666666666543
No 96
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=65.74 E-value=90 Score=27.02 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
..+.+-..++...+..++..++.+...+++++..++.+|..+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 130 FQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344455566777777777888888888888888888888777654
No 97
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=65.49 E-value=81 Score=26.46 Aligned_cols=100 Identities=11% Similarity=0.181 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCC---CCCchhhhhhhhhhhc--cChHHHHH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAY----LTLEELRQL---PDNTNTYKSIGRTFVL--EPKSVLMN 75 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~----lT~~EL~~l---~~dt~vYk~VGrmFv~--~~k~~i~~ 75 (129)
+...+..+|+.+.-.+.+.+..+...+..++..++... ++-.-|+.= |+---+.-+++..++. ..-...+.
T Consensus 255 et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~ 334 (384)
T PF03148_consen 255 ETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIE 334 (384)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999988888877654 334444432 4333344455554432 22334444
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e 104 (129)
.|.++...++..+..|.+....|+..+..
T Consensus 335 ~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 335 ALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554443
No 98
>PF14282 FlxA: FlxA-like protein
Probab=65.47 E-value=28 Score=23.97 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 3 DEANRAAFQEIKGRMIENTGKMKQVQNQM 31 (129)
Q Consensus 3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~ 31 (129)
+++-++.+..|+.++..++.+|..+..+.
T Consensus 46 ~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 46 AEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 99
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=65.00 E-value=52 Score=24.07 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHH
Q 045953 19 ENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 19 ~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lek 93 (129)
.+...+..+..++..+..+.+...-.+..|.+.|++. .....+..|..+++.++.++..|..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-------------el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE-------------ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566677777777777777777788888887653 2344445555555555555555554
No 100
>PF15456 Uds1: Up-regulated During Septation
Probab=64.70 E-value=34 Score=24.49 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDP 117 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~ 117 (129)
=+++|+.+...++.++..+.++-. ++.++.++-..|-.+..+++
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~ 66 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSS 66 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCc
Confidence 356777777788888888877777 77777777777777765555
No 101
>PRK14127 cell division protein GpsB; Provisional
Probab=63.58 E-value=23 Score=24.91 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=46.3
Q ss_pred hhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 58 YKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 58 Yk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
|+..-|=|=...++..++++-+..+.+..++..|+.+...|+.++.+.+..+...
T Consensus 16 F~~~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 16 FKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4444455677788999999999999999999999999999999999999988754
No 102
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=63.52 E-value=19 Score=22.28 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQVQNQM 31 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~v~~Q~ 31 (129)
.+||+||..|..+.....+.+.++-....++
T Consensus 27 ~~np~lR~~l~~~~~~~~~~~~~l~~~m~~k 57 (64)
T PF07875_consen 27 CANPELRQILQQILNECQQMQYELFNYMNQK 57 (64)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3799999999999999999999988777654
No 103
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=63.42 E-value=75 Score=25.32 Aligned_cols=102 Identities=11% Similarity=0.098 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhh----------hhhhhh------ccChHHHH
Q 045953 11 QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS----------IGRTFV------LEPKSVLM 74 (129)
Q Consensus 11 ~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~----------VGrmFv------~~~k~~i~ 74 (129)
.+++.++..+.+++.....=+..+|.++-.+.-....-...+++..+-.+ .|+.== -.+-+.|+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 56777888888888888888888888888877554443333333222111 112110 13556676
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.=+...-+.+..+...||...-....++..++..+..+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666655544
No 104
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=63.00 E-value=31 Score=28.92 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.=++++++++..++.++..++.....+++.++.+...|+++
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666555555555555555555555543
No 105
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=62.59 E-value=71 Score=24.80 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELR 49 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~ 49 (129)
+.+.+.+.......+..........+..++..++.+.....+..
T Consensus 69 ~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e 112 (237)
T PF00261_consen 69 AEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAE 112 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666677777777777777777766654
No 106
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=62.44 E-value=20 Score=29.10 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e 104 (129)
.....+|+++...++..|+.|++.++.+++.+..
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emrt 36 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKEMRT 36 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999998887754
No 107
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=62.29 E-value=89 Score=25.78 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=59.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQR 80 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~ 80 (129)
||..+|+-..-.+..-+...+..+.....++..++..+......+.+-.. ..+ +..+...+=..+...-..++...
T Consensus 67 Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~-~~~---~~~~n~~~~~~~~t~~la~~t~~ 142 (301)
T PF06120_consen 67 MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGI-TEN---GYIINHLMSQADATRKLAEATRE 142 (301)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-Ccc---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777654443333221 111 11122111122233333334444
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 81 LKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 81 ~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
....+.++.....+..-++..+.++.++.-.++
T Consensus 143 L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 143 LAVAQERLEQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555556666666666655555444
No 108
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=61.91 E-value=1e+02 Score=27.45 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
+.+++........+.+.+++..+..+...|+.++++++..+.++
T Consensus 83 ~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 83 SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566677777777778888888888887777777776644
No 109
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=61.57 E-value=71 Score=24.46 Aligned_cols=86 Identities=13% Similarity=0.240 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHH
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIA 89 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~ 89 (129)
+.+++..+.+++..+..+......+.+--.+-..++.-.+.-.. +.|.++....+.+..+..++.
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~---------------~Lpqll~~h~eEvr~Lr~~LR 78 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEA---------------ELPQLLQRHNEEVRVLRERLR 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------hHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777666666666555443221 345555555666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045953 90 ALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 90 ~Lekq~~~Le~~l~e~e~~Lr 110 (129)
....+...++..+++.+..|.
T Consensus 79 ~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 79 KSQEQERELERKLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554443
No 110
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=61.48 E-value=1.6e+02 Score=28.51 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESA 87 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~ 87 (129)
....+....+-.+...++.+..++.+.++.++....-..+|... + +-..+. -..+++|...+.+....
T Consensus 682 ~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~--------~-e~~~~~---~~~~~~l~~ei~~~~~e 749 (1074)
T KOG0250|consen 682 NQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT--------A-EEKQVD---ISKLEDLAREIKKKEKE 749 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------h-hhhhcc---hhhhHHHHHHHHHHHHH
Confidence 33334444444455555566666666666666555555555543 1 111111 12344455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 88 IAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
|...+...+.+...++.++...+++.
T Consensus 750 Ie~~~~~~e~l~~e~e~~~~e~~e~~ 775 (1074)
T KOG0250|consen 750 IEEKEAPLEKLKEELEHIELEAQELE 775 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544443
No 111
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=60.66 E-value=41 Score=21.36 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=28.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
.+++.++...+|.+...++.+.+.+.+++++..++..=++
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777777777778888888777766443
No 112
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.64 E-value=51 Score=22.11 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhcCCCCCchhhhhhhhhh
Q 045953 18 IENTGKMKQVQNQMRNKEGEKKRAY------LTLEELRQLPDNTNTYKSIGRTF 65 (129)
Q Consensus 18 ~~~qqql~~v~~Q~~~~e~~~r~~~------lT~~EL~~l~~dt~vYk~VGrmF 65 (129)
...+..+..+..++..++..+|... ++.+||..|. ..+-.|++++-
T Consensus 15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE--~~Le~aL~~VR 66 (100)
T PF01486_consen 15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLE--QQLESALKRVR 66 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHH--HhhhhhHHHHH
Confidence 3456666667777777776666544 6666776663 44666666653
No 113
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=59.10 E-value=32 Score=21.58 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 82 KDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 82 ~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
-++|.|+..||++....+.+....+..++.
T Consensus 28 ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 28 LTIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888888877777664
No 114
>PF15294 Leu_zip: Leucine zipper
Probab=58.56 E-value=1e+02 Score=25.23 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP 52 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~ 52 (129)
+-|.+.+..|+..-..++.++..+..+....-.+...++-++.+|....
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~ 176 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQ 176 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999999999999999998853
No 115
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=58.21 E-value=86 Score=24.32 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 27 VQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 27 v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
+..|...+......+....+||+++.....--...++-+....+ .++.....+...|.+|+-....+....+.+.
T Consensus 48 L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~r-----qlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 48 LRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQAR-----QLEKEQQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 44444445555555555566666665444444444444433322 3344444444444444444444444445555
Q ss_pred HHHHHHHcCChhHHHHH
Q 045953 107 SNLAELLQQDPGLAQQI 123 (129)
Q Consensus 107 ~~Lrell~~~~~~~~~~ 123 (129)
....++...+.+|..++
T Consensus 123 ~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 123 KRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 55555544444444443
No 116
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.02 E-value=78 Score=23.79 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
.+..+.+...-++.+.+++.+|.-+-..++.++..++..=+++|
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555556666666655555555555555544443
No 117
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=57.79 E-value=19 Score=30.41 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhcCC------CCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 34 KEGEKKRAYLTLEELRQL------PDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 34 ~e~~~r~~~lT~~EL~~l------~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
|...+||++=-..-|+.+ ..+.--|+|+|-+- ..+..++...++.++..|...+..|+..+...+.
T Consensus 101 L~VqKRRIYDITNVLEGI~LIeKksKN~IqW~G~~~~~--------~~~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~ 172 (354)
T KOG2577|consen 101 LNVQKRRIYDITNVLEGIGLIEKKSKNNIQWIGGDFNS--------TGGVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQ 172 (354)
T ss_pred hccccceeeehhhhhhcccceeeccccceeeecCCCcc--------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555444444443 55666677777653 3345677888899999999999999999999999
Q ss_pred HHHHHHcCC
Q 045953 108 NLAELLQQD 116 (129)
Q Consensus 108 ~Lrell~~~ 116 (129)
+|+.+....
T Consensus 173 ~L~~lted~ 181 (354)
T KOG2577|consen 173 NLRLLTEDV 181 (354)
T ss_pred HHHHHhcch
Confidence 999987653
No 118
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.48 E-value=1.8e+02 Score=27.71 Aligned_cols=99 Identities=11% Similarity=0.149 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhh-----hccChHHHHHHHHHHHhhH
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTF-----VLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmF-----v~~~k~~i~~eL~e~~~~~ 84 (129)
+.++++++.+.|+.|..+....+.++..++...-+..+ ++.--.-+-+.| +..--.+-.++|....++-
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~------~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk 561 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKE------TTQRKSELEAARRKKELIRQAIKDQLDELSKETESK 561 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccC------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666665555443221 111111122222 2222333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 85 ESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
-.+|..+..+.+.|...+...+-..++++.
T Consensus 562 ~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 562 LNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555555555554
No 119
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=57.05 E-value=1.3e+02 Score=26.04 Aligned_cols=116 Identities=11% Similarity=0.065 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhh
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKD 83 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~ 83 (129)
-++++-+.|.|.=...+.-++......|...+..+..++.++.. .+.+.=-+--|+.-.+-+|.+.-=-+.-.-.
T Consensus 274 ~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~aird-----K~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~ 348 (421)
T KOG2685|consen 274 LAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRD-----KEGPLKVAQTRLENRTYRPNVELCRDQAQYR 348 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc-----ccccHHHHHHHHHHcccCCchHHHHhHHHHH
Confidence 35566666666666666667777777777777777666666542 2222333333444444444443333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 84 SESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
+=.++-.|......|..+|.+++..++.+...+.+|-..|+
T Consensus 349 L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 349 LVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777888888888888888888888887765
No 120
>PHA02047 phage lambda Rz1-like protein
Probab=57.01 E-value=59 Score=22.61 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQD 116 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~ 116 (129)
.-.+.|..+.+.++.++..+.++-..|+.+-+.....|+..+.+.
T Consensus 34 ~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n 78 (101)
T PHA02047 34 EEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQN 78 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456788999999999999999999999999888888999888753
No 121
>PF13864 Enkurin: Calmodulin-binding
Probab=56.92 E-value=57 Score=21.90 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=39.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhcC
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQ---------VQNQMRNKEGEKKRAYLTLEELRQ 50 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~---------v~~Q~~~~e~~~r~~~lT~~EL~~ 50 (129)
||++|-...+..|..+..++..+++. ....+..+++++..++-++.-|+.
T Consensus 37 l~eeER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 37 LSEEERQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 68888889999999999998888876 566777777777777777666553
No 122
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=56.66 E-value=44 Score=20.52 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
...+.+|..++..++.....|......|...+..+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666666665555555443
No 123
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.46 E-value=5.1 Score=29.33 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=19.2
Q ss_pred HHHHhcCCCCCchhhhhhhhhh
Q 045953 44 TLEELRQLPDNTNTYKSIGRTF 65 (129)
Q Consensus 44 T~~EL~~l~~dt~vYk~VGrmF 65 (129)
|++||+++|-+.++||++-..-
T Consensus 127 tldele~l~v~~ktyrpl~~~~ 148 (161)
T KOG0884|consen 127 TLDELEKLPVNEKTYRPLNDVH 148 (161)
T ss_pred hHHHHhhcccCccccccchhee
Confidence 8999999999999999976543
No 124
>PRK01156 chromosome segregation protein; Provisional
Probab=56.40 E-value=1.7e+02 Score=27.04 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccCh--HHHHHHHHHHHhhHHHHHHHHHHHH
Q 045953 18 IENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPK--SVLMNEQEQRLKDSESAIAALQASK 95 (129)
Q Consensus 18 ~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k--~~i~~eL~e~~~~~e~~i~~Lekq~ 95 (129)
.++...+..+...+..+...+....-...+|.+..+.-. +||.|=+--+. ++...++ +..+..+++.+++..
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~---~~~~Cp~c~~~~~~e~~~e~---i~~~~~~i~~l~~~i 485 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN---GQSVCPVCGTTLGEEKSNHI---INHYNEKKSRLEEKI 485 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCCCCCCCcCChhhHHHH---HHHHHHHHHHHHHHH
Confidence 444555666666666677766666666667665432222 46665443332 4444444 667777888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045953 96 EYLEKQKAEVESNLAELL 113 (129)
Q Consensus 96 ~~Le~~l~e~e~~Lrell 113 (129)
+.|...++.+...+..+-
T Consensus 486 ~~l~~~~~~l~~~~~~~~ 503 (895)
T PRK01156 486 REIEIEVKDIDEKIVDLK 503 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888887777777776643
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.30 E-value=1.1e+02 Score=25.10 Aligned_cols=33 Identities=36% Similarity=0.432 Sum_probs=14.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
.++.++...++.+|+....+..-+...+.+++.
T Consensus 228 ~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 228 EELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 126
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.30 E-value=64 Score=22.23 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCchhhhh
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGE-KKRAYLTLEELRQLPDNTNTYKS 60 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~-~r~~~lT~~EL~~l~~dt~vYk~ 60 (129)
++++.+.+++.+...++++-..+..++..+... --.-+++.++|.=+.||-.+|.=
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy~~ 87 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFYRI 87 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEEEe
Confidence 345555556666666666666666666666553 33445677788877777777743
No 127
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.11 E-value=53 Score=21.27 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 88 IAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
...|...-..|.......++.|+-++
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433
No 128
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=55.41 E-value=54 Score=21.93 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=21.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
+++.+..+|.+...+..-++.++++++.+.+|+
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEA 34 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666667777777777777777666653
No 129
>PF14282 FlxA: FlxA-like protein
Probab=54.86 E-value=67 Score=22.06 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHcCC
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQA-----------SKEYLEKQKAEVESNLAELLQQD 116 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lek-----------q~~~Le~~l~e~e~~Lrell~~~ 116 (129)
.+..+..|.+.+..+...|..|.. +..-|+.++..++.+|..+....
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888887765 45567777777777777665443
No 130
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.69 E-value=2.7e+02 Score=28.91 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
=+..|.+.+..+++.+.+|.+.++.++..+.++.+.|..
T Consensus 965 ~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~ 1003 (1930)
T KOG0161|consen 965 KLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQA 1003 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555443
No 131
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.60 E-value=1.4e+02 Score=25.79 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCC------------chhhhh-
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL-----------PDN------------TNTYKS- 60 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l-----------~~d------------t~vYk~- 60 (129)
++.+.+.+.+.+...++.+|+.+...+.+++.++..+.-++++++.= +.. ...|++
T Consensus 49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g 128 (420)
T COG4942 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSG 128 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555666666666666777777777777777777766666655432 111 112332
Q ss_pred --hhhhhhccCh------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q 045953 61 --IGRTFVLEPK------------SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQ 121 (129)
Q Consensus 61 --VGrmFv~~~k------------~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~ 121 (129)
..-.....+. ..+...+.+.++.+....+.|...+..+..+-+++...+-+...+...|++
T Consensus 129 ~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~ 203 (420)
T COG4942 129 RNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQ 203 (420)
T ss_pred CCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222 245666777777777777777777777776666666655555555555444
No 132
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.24 E-value=58 Score=25.89 Aligned_cols=35 Identities=6% Similarity=0.282 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAY 42 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~ 42 (129)
..+.+|+.++.++++.+..++.|++....++..+.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567788888888888888877777766666544
No 133
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=54.08 E-value=65 Score=21.64 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q 045953 86 SAIAALQASKEYLEKQKAEVESNLAELLQQDPGL 119 (129)
Q Consensus 86 ~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~ 119 (129)
.+.+.+..+...++.++.+++..+..++..=|++
T Consensus 74 ~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPNi 107 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKELEEELNELLLSIPNI 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3444555566666667777777777777665554
No 134
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=53.93 E-value=62 Score=23.84 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
...++..++...+.++.+++.|....+.++.+.+.+..-|...+..
T Consensus 45 ~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 45 IAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777777666543
No 135
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=53.35 E-value=89 Score=23.01 Aligned_cols=36 Identities=3% Similarity=0.219 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRA 41 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~ 41 (129)
..+.+.+++.++.+.+..+..........+......
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444443333
No 136
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.28 E-value=28 Score=28.15 Aligned_cols=61 Identities=28% Similarity=0.265 Sum_probs=39.3
Q ss_pred hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHcCChhHHHHHHhc
Q 045953 65 FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQ----KAEVESN---LAELLQQDPGLAQQIMSM 126 (129)
Q Consensus 65 Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~----l~e~e~~---Lrell~~~~~~~~~~~~~ 126 (129)
|+..+....+.+|..++..++.+|..|.. .+.++.+ ++..+++ |+.+-++.++.++.+.+.
T Consensus 49 ~~~~~~~~~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~~a~~~~~~~~ 116 (262)
T COG1729 49 RVQNAHSYRLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGRQALAQGIGDQ 116 (262)
T ss_pred cccchhhhccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccc
Confidence 67777778899999999999999999984 3333333 2333333 455445555666655443
No 137
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.21 E-value=54 Score=28.77 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=33.4
Q ss_pred hhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH
Q 045953 61 IGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQ 122 (129)
Q Consensus 61 VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~ 122 (129)
|..-|-...-...+.+-..+.+.++.++..|....+-+.+...+.+..|.++=....+|-.+
T Consensus 58 V~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 58 VDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44556666666666677777777777777775443433344444444444433333333333
No 138
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.84 E-value=1.2e+02 Score=24.46 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccC---hHHHHHHHHHHHhh
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEP---KSVLMNEQEQRLKD 83 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~---k~~i~~eL~e~~~~ 83 (129)
++++.|+......++..-..+..-|...+.. -+..+..=|.. -.+|.++-.++=-.+ ...+..+|.+-.+.
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~s--t~~~Vr~lLqq----y~~~~~~i~~le~~~~~~l~~ak~eLqe~eek 78 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDS--TALKVRKLLQQ----YDIYRTAIDILEYSNHKQLQQAKAELQEWEEK 78 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhh--HHHHHHHHHHH----HHHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 4566666666666665555555555554432 22222223333 236777766654333 56889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 84 SESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
.+.++..|+.+..+|+..+..++..++-+.
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988654
No 139
>smart00338 BRLZ basic region leucin zipper.
Probab=52.76 E-value=52 Score=20.20 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
...+.+|+.++..++.....|..+...|...+..+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555544433
No 140
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=52.58 E-value=39 Score=22.92 Aligned_cols=90 Identities=24% Similarity=0.281 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhcCCCCCchhhhhhhh-hhhccChHH-------------HHHHHHHHHhhHHHH
Q 045953 25 KQVQNQMRNKEGEKKRAY---LTLEELRQLPDNTNTYKSIGR-TFVLEPKSV-------------LMNEQEQRLKDSESA 87 (129)
Q Consensus 25 ~~v~~Q~~~~e~~~r~~~---lT~~EL~~l~~dt~vYk~VGr-mFv~~~k~~-------------i~~eL~e~~~~~e~~ 87 (129)
+.+.+++..+...+.+.. -|++.|.+.+.+..++-++|. +||....+. +...+++-.+-++.+
T Consensus 6 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~r 85 (120)
T PF02996_consen 6 ENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKKR 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHHH
Confidence 334444444444444444 444455544557889999998 776654432 234678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 88 IAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
++.|+.+.+.+..++...+.++..+..
T Consensus 86 ~~~l~~~~~~l~~~~~~~~~~~~~~~~ 112 (120)
T PF02996_consen 86 IKELEEQLEKLEKELAELQAQIEQLEQ 112 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876653
No 141
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=52.41 E-value=1e+02 Score=23.54 Aligned_cols=89 Identities=24% Similarity=0.315 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhc--c-ChHH---HHHHHHHHHhhHHHHHHHHHHHHHH
Q 045953 24 MKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVL--E-PKSV---LMNEQEQRLKDSESAIAALQASKEY 97 (129)
Q Consensus 24 l~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~--~-~k~~---i~~eL~e~~~~~e~~i~~Lekq~~~ 97 (129)
|+.+...|..++.+...++-...- +..++.-|+.|-.--.. . ...+ =..+|......++.+-.-|+++.+|
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~---LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLey 82 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQ---LSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777776666544 44567778876542111 1 0111 1458888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 045953 98 LEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 98 Le~~l~e~e~~Lrell~~ 115 (129)
+.+=+...+..=..++..
T Consensus 83 MRkmv~~ae~er~~~le~ 100 (178)
T PF14073_consen 83 MRKMVESAEKERNAVLEQ 100 (178)
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 999988877655554433
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=51.95 E-value=80 Score=25.85 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=22.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
++.|+...+.+..++..|++....+.+.+.+++....++
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666655555544
No 143
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=51.84 E-value=2.2e+02 Score=27.17 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhh-hccChHHHHHHHHHHHhhHHHHHH
Q 045953 11 QEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTF-VLEPKSVLMNEQEQRLKDSESAIA 89 (129)
Q Consensus 11 ~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmF-v~~~k~~i~~eL~e~~~~~e~~i~ 89 (129)
.+|-.|..+.+.|+.....-+..+++......-+++++..-. |++- ...+..+..+.++.....+..+++
T Consensus 441 ~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~---------~~~~~K~e~~~~~le~l~~El~~l~~e~~ 511 (980)
T KOG0980|consen 441 ADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAA---------GRAETKTESQAKALESLRQELALLLIELE 511 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666555555556666666555666655432 2211 123455667778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 90 ALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 90 ~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
.|+.....+.....+.-.+|-+.+.++.+++-.+.
T Consensus 512 ~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~ 546 (980)
T KOG0980|consen 512 ELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELV 546 (980)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888777777766777777777777766655543
No 144
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.56 E-value=1.9e+02 Score=26.17 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=43.3
Q ss_pred CCCCchhhhhhh-hhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 51 LPDNTNTYKSIG-RTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 51 l~~dt~vYk~VG-rmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
..|...-|.+|| +-.|..+-..+.++..+.....+.+..+|+....-+.-..++...-++.+
T Consensus 403 ~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~ 465 (581)
T KOG0995|consen 403 RNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEI 465 (581)
T ss_pred cCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777775 46788888888888888888777777777777666666666655555544
No 145
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.27 E-value=1.8e+02 Score=25.96 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=16.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
.++++.++..+..++..+..+.+.+.++++.++..+
T Consensus 430 l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 430 LGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444
No 146
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=50.23 E-value=75 Score=21.28 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 86 SAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 86 ~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
.+|..|..-...|...|...+.....
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~~~ 64 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARANR 64 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence 33333444444444444444444333
No 147
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=50.20 E-value=1.4e+02 Score=24.43 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCchhhhhhhhhhhccChHHHHHHHHHHHh-
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP----DNTNTYKSIGRTFVLEPKSVLMNEQEQRLK- 82 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~----~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~- 82 (129)
+.+..+-.++.....++..+..++...+..+.+-..+++.+-.-. ..-..|-.+|..+...=...+...+..+.+
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~ 163 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEG 163 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcccc
Confidence 455566677777888888888887777777777777776665431 123345555555443333333333333332
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 045953 83 --DSESAIAALQASKEYLEKQKAEVESNLAELLQQDP 117 (129)
Q Consensus 83 --~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~ 117 (129)
.....+..++....+|++++.+++..+.=.++.-|
T Consensus 164 d~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~p 200 (333)
T PF05816_consen 164 DQMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAP 200 (333)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 12256677778888888888888877765555544
No 148
>PF13514 AAA_27: AAA domain
Probab=49.89 E-value=2.4e+02 Score=26.97 Aligned_cols=105 Identities=16% Similarity=0.247 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCc------hhhhhhhhhhhccChHHHHH
Q 045953 3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELR-QLPDNT------NTYKSIGRTFVLEPKSVLMN 75 (129)
Q Consensus 3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~-~l~~dt------~vYk~VGrmFv~~~k~~i~~ 75 (129)
+..+...|..+. .+.....++.....++..++..+....-....|- .++++. ..+..+-.. -.-..
T Consensus 725 ~~~~~~~l~~l~-~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~------l~~a~ 797 (1111)
T PF13514_consen 725 PEEALEALELLE-ELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRAR------LEEAR 797 (1111)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHH------HHHHH
Confidence 334444333332 3555555666666666666666555555444442 222211 122222111 11111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
........+..++..++.+...++..+...+..+.+++.
T Consensus 798 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~ 836 (1111)
T PF13514_consen 798 EAQEERERLQEQLEELEEELEQAEEELEELEAELAELLE 836 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344555666666667777777777777777777664
No 149
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=49.88 E-value=44 Score=23.78 Aligned_cols=55 Identities=24% Similarity=0.213 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
+.+.+..-|..+.+.++.+|+.|......|...+...+.+....- -|..|.+-|+
T Consensus 75 ~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~~~~~~~--~~~~~~~~~~ 129 (131)
T cd04786 75 QHDELLAALERKVADIEALEARLAQNKAQLLVLIDLIESKPDEMD--CADNARRVMA 129 (131)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--chHHHHHHHh
Confidence 446778889999999999999999999998888877665443211 2344544443
No 150
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.76 E-value=1.1e+02 Score=23.11 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHH
Q 045953 14 KGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSES 86 (129)
Q Consensus 14 q~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~ 86 (129)
..-+.++...+..+...+...-...+..+.-..++... ..-|..=-..-+....+++-...-.++..++.
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~---~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEE---AEKWEKQAELALAAGREDLAREALQRKADLEE 98 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555554432 23333333333444455544333333333333
No 151
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=49.70 E-value=69 Score=20.68 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=13.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
+..|......++..+..|.++...++..+..++
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333
No 152
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=49.69 E-value=1.3e+02 Score=23.87 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 37 EKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 37 ~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
.++.+--+++.+--+-+|.+.|- +.-|+.-.-..+..|..+.......|..|.++...|+.++++++
T Consensus 73 hlk~~~~~Lk~~vP~~~~~~~~t---~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 73 HLKDCFESLKDSVPLLNGETRST---TLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHHHHhCCCCCCcchhh---hhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666777766666666665 77888888899999999999999999999999999999998766
No 153
>PF14992 TMCO5: TMCO5 family
Probab=49.68 E-value=1.4e+02 Score=24.38 Aligned_cols=41 Identities=27% Similarity=0.376 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.+..+-......++....+|++.-+++-+++.+++.++.+
T Consensus 55 ~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e 95 (280)
T PF14992_consen 55 DIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDE 95 (280)
T ss_pred hhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhcc
Confidence 33444444445555666677777777777777777777654
No 154
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=49.37 E-value=66 Score=27.09 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=25.5
Q ss_pred hhccChHHHHHHHHHHHhhHHHHHHHHHHH
Q 045953 65 FVLEPKSVLMNEQEQRLKDSESAIAALQAS 94 (129)
Q Consensus 65 Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq 94 (129)
+..-+-++..+.+.++++.++.+|..|+.+
T Consensus 235 ~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 235 LAELNGKEYLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688999999999999999999888875
No 155
>COG5293 Predicted ATPase [General function prediction only]
Probab=49.10 E-value=1.9e+02 Score=25.69 Aligned_cols=109 Identities=20% Similarity=0.219 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCC--CCC-chhhhhhhhhh---hccChHHHHHHHHHHHh
Q 045953 16 RMIENTGKMKQVQNQMRN-------KEGEKKRAYLTLEELRQL--PDN-TNTYKSIGRTF---VLEPKSVLMNEQEQRLK 82 (129)
Q Consensus 16 k~~~~qqql~~v~~Q~~~-------~e~~~r~~~lT~~EL~~l--~~d-t~vYk~VGrmF---v~~~k~~i~~eL~e~~~ 82 (129)
+..++...++.+..+|.. ......+.++.+++ ..+ |++ ...|..||-.| |+.+.+.+..=. ..
T Consensus 256 ~y~e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~-~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~---r~ 331 (591)
T COG5293 256 DYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKE-QILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFN---RA 331 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchh-hccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHH---HH
Confidence 334455556666666665 33444555666665 444 444 56799999887 444444443221 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHhccC
Q 045953 83 DSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSMSV 128 (129)
Q Consensus 83 ~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~~~~ 128 (129)
..++|=.=|......++.-|++....++++-..+..++.-|-++|+
T Consensus 332 ~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~ 377 (591)
T COG5293 332 ITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGV 377 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 2233333344444445555555566666666666666777777765
No 156
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=48.60 E-value=1.3e+02 Score=26.02 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953 23 KMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 23 ql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l 102 (129)
|...+...+..++.++...+-++.+++. +++ -.++..+.+.+...+..|..+...|+.-+
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~-~~~-------------------~~~~~~~~~~l~~~~~~l~~~~~~l~~~l 223 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELEL-NPD-------------------DPELKSDIEELERHISSLKERIEFLENML 223 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc-ccc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777777776665 222 23455667777777777777777777777
Q ss_pred HHHHHHHH
Q 045953 103 AEVESNLA 110 (129)
Q Consensus 103 ~e~e~~Lr 110 (129)
+++.....
T Consensus 224 ~~l~~~~~ 231 (475)
T PF10359_consen 224 EDLEDSES 231 (475)
T ss_pred HHHhhhcc
Confidence 76665543
No 157
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=48.30 E-value=1.3e+02 Score=23.51 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=52.0
Q ss_pred hhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 58 YKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 58 Yk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
=...|..|-..|.+.+-..+..++..+..-+..-...-..+...+......|.-+-.+...|...|
T Consensus 63 r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~l 128 (296)
T PF13949_consen 63 RAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASL 128 (296)
T ss_dssp HHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS
T ss_pred HHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhC
Confidence 334477788889999999999999999999999999999999999999999965555544554444
No 158
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=48.24 E-value=67 Score=23.31 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=36.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQ 122 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~ 122 (129)
+.++...+.+.+.-++.|+.+...=+..+..+..+|.++...+..|-++
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4667777778888888888877777777777788888877777766554
No 159
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=48.15 E-value=71 Score=20.36 Aligned_cols=48 Identities=6% Similarity=0.079 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDN 54 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~d 54 (129)
...+..++.+..+++.+...+..++..+...-+.-+++.++|.=.+|+
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~lgM~~p~ 77 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQLGMKLPD 77 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCCCC
Confidence 344555566666666666666666776666667777777776544444
No 160
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.97 E-value=2.9e+02 Score=27.33 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=6.0
Q ss_pred hhhhhhhhhccChH
Q 045953 58 YKSIGRTFVLEPKS 71 (129)
Q Consensus 58 Yk~VGrmFv~~~k~ 71 (129)
|.++|..-|+.-++
T Consensus 894 i~~i~~e~~q~qk~ 907 (1293)
T KOG0996|consen 894 IDEIGGEKVQAQKD 907 (1293)
T ss_pred HHHhhchhhHHhHH
Confidence 44444444443333
No 161
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=47.95 E-value=93 Score=22.09 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=30.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-hHHHHHH
Q 045953 81 LKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDP-GLAQQIM 124 (129)
Q Consensus 81 ~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~-~~~~~~~ 124 (129)
+-.+...+..|+++..+|+...+.....+++.++.+. ..|..+.
T Consensus 3 i~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~l 47 (171)
T PF03357_consen 3 ILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYL 47 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3455666777778888888888888888888887654 5555443
No 162
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.83 E-value=1.8e+02 Score=24.81 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e 104 (129)
.......+......+...++.|..+...|+..+..
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555543
No 163
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.58 E-value=2.8e+02 Score=27.05 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCchhhhhhhhhh--hccChHHHHHHHH---
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL--PDNTNTYKSIGRTF--VLEPKSVLMNEQE--- 78 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l--~~dt~vYk~VGrmF--v~~~k~~i~~eL~--- 78 (129)
.++.|+.+|..+..+..+|+.+..+.+....-....++...+|.-+ .-+..-|.-++.-+ ++.+..+...+++
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~ 761 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKE 761 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666665555555555555555555555433 11223344444432 3333444333333
Q ss_pred HHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcC
Q 045953 79 QRLKDSESAIAALQASKE----YLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~~----~Le~~l~e~e~~Lrell~~ 115 (129)
...+.|+..|++|++..+ +=+..+++++.+|..+-+.
T Consensus 762 ~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~ 802 (1174)
T KOG0933|consen 762 RALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQR 802 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHH
Confidence 334567777777777654 3356677777777765543
No 164
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=47.55 E-value=98 Score=21.84 Aligned_cols=57 Identities=30% Similarity=0.338 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSM 126 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~~ 126 (129)
...+..+...-...++..-.+.+.++..|++.+.+++..+.++-.++.=|=.+|-+.
T Consensus 75 ~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 75 INELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444555555556666777788888888888888877777776666554
No 165
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=47.27 E-value=84 Score=20.97 Aligned_cols=16 Identities=6% Similarity=0.163 Sum_probs=6.9
Q ss_pred HHHHHHHhhHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAA 90 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~ 90 (129)
++|+++...+...+..
T Consensus 28 eELKekn~~L~~e~~~ 43 (79)
T PRK15422 28 EELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 166
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.73 E-value=78 Score=20.47 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
++.+.|+.++..+=+.|..|+.....|..+-..+.+.-.++-
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456777778777777777777777777776555444444443
No 167
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=46.30 E-value=1.1e+02 Score=23.54 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
-|.+=|++|.+.....+..-++.+...+..+.+.+..|.+.=
T Consensus 77 pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar 118 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQAR 118 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666777777777777666666666666665555555443
No 168
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=45.99 E-value=1.2e+02 Score=23.25 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=30.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh-HHHHHH
Q 045953 79 QRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPG-LAQQIM 124 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~-~~~~~~ 124 (129)
.-+-.+...+..|++...+|+.++++.....+..+..+.. -|-.+.
T Consensus 27 ~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~L 73 (191)
T PTZ00446 27 KAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILL 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3444566667777788888888887777777777766553 555544
No 169
>PLN02678 seryl-tRNA synthetase
Probab=45.88 E-value=2e+02 Score=24.93 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 045953 87 AIAALQASKEYLEKQKAEVESNLAELLQQDP 117 (129)
Q Consensus 87 ~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~ 117 (129)
+++.|..+...++..+.+++..|.+++..=|
T Consensus 79 ~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 79 ETKELKKEITEKEAEVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444455555555566666666666665444
No 170
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.87 E-value=81 Score=20.36 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=28.6
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 68 EPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 68 ~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
..+++.+..|.+.-+.+....-.+....+.|..+..+++..+.++
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777766666666666666666666666666555554
No 171
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=45.83 E-value=98 Score=22.77 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcCChhHHHHHHhc
Q 045953 69 PKSVLMNEQEQRLKD--SESAIAALQASKEYLEKQKAE--VESNLAELLQQDPGLAQQIMSM 126 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~--~e~~i~~Lekq~~~Le~~l~e--~e~~Lrell~~~~~~~~~~~~~ 126 (129)
+|++..++|+...+. -+++-+.++-=++|.+...++ +|+++-+-++.+..+|+++.+.
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 567788888888774 344555666667777777664 7888888888999999998754
No 172
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.75 E-value=2.9e+02 Score=26.77 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 045953 25 KQVQNQMRNKEGEKK 39 (129)
Q Consensus 25 ~~v~~Q~~~~e~~~r 39 (129)
..+..++..++..+.
T Consensus 445 ~~~~~~l~~l~~~~~ 459 (1201)
T PF12128_consen 445 EQLKSELAELKQQLK 459 (1201)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333333333
No 173
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=45.56 E-value=2.3e+02 Score=25.61 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=12.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYL 98 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~L 98 (129)
..+|.++++.+...+...-+..+.|
T Consensus 89 ~~~L~kElE~L~~qlqaqv~~ne~L 113 (617)
T PF15070_consen 89 AEHLRKELESLEEQLQAQVENNEQL 113 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554443333333
No 174
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=45.54 E-value=81 Score=21.27 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=12.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEK 100 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~ 100 (129)
..++++..++.+++.|+++.++|.+
T Consensus 12 ~~~~kl~q~e~~~k~L~nr~k~l~k 36 (86)
T PF12958_consen 12 KAEKKLEQAEHKIKQLENRKKKLEK 36 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555543
No 175
>PRK04406 hypothetical protein; Provisional
Probab=45.24 E-value=85 Score=20.42 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
+=+.+|+.++.-.+.-|..|......-++.+..++.+++-+
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665555555555555555544
No 176
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=44.93 E-value=1.4e+02 Score=27.96 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=36.4
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 68 EPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESN 108 (129)
Q Consensus 68 ~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~ 108 (129)
.|-+.-+.++++..+++|.++..+....+.|++++.++.+-
T Consensus 88 ~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~ 128 (829)
T KOG2189|consen 88 APPPREIIDLEEQLEKLESELRELNANKEALKANYNELLEL 128 (829)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 57778889999999999999999999999999999887654
No 177
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=44.80 E-value=95 Score=20.88 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=27.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 045953 79 QRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDP 117 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~ 117 (129)
+....++..+..|..-...|+.+-..+...|++++.+..
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345666666777777777777777777777777776654
No 178
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=44.57 E-value=3.9e+02 Score=27.83 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
.+....+|.+.....++..+.|.+....|+..+.+++..+.
T Consensus 990 lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le 1030 (1930)
T KOG0161|consen 990 LEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLE 1030 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555554443
No 179
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=44.28 E-value=1.3e+02 Score=22.51 Aligned_cols=39 Identities=15% Similarity=0.361 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAY 42 (129)
Q Consensus 3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~ 42 (129)
|.+|.+.+.+++. -+..+.++..+...+..++..++.+-
T Consensus 11 d~~L~~~L~~l~~-hq~~~~~I~~L~~e~~~ld~~i~~~~ 49 (188)
T PF10018_consen 11 DDELSSALEELQE-HQENQARIQQLRAEIEELDEQIRDIL 49 (188)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667766655522 33344455555555544444444433
No 180
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=43.53 E-value=1.2e+02 Score=22.91 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=16.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
|++....+..+++.|++....|.+++...++.-+.++
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 181
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=43.25 E-value=31 Score=21.35 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCCCCchhhhhhhhhhhc
Q 045953 39 KRAYLTLEELRQLPDNTNTYKSIGRTFVL 67 (129)
Q Consensus 39 r~~~lT~~EL~~l~~dt~vYk~VGrmFv~ 67 (129)
.....|++.|+.+|+++ +||--=-.++.
T Consensus 9 ~lY~~~L~~L~~~P~~a-~YR~~tE~it~ 36 (57)
T PF04716_consen 9 SLYNKTLKALKKIPEDA-AYRQYTEAITK 36 (57)
T ss_pred HHHHHHHHHHHhCCCcc-HHHHHHHHHHH
Confidence 34567999999998765 88865444443
No 182
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=43.22 E-value=3.3e+02 Score=26.61 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 2 SDEANRAAFQEIKGRMIENTGKMKQVQNQM 31 (129)
Q Consensus 2 ~d~el~k~~~Elq~k~~~~qqql~~v~~Q~ 31 (129)
|..+|.+.+.+...++.+.+.+++....+.
T Consensus 103 s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 103 STDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455666666666666777777776666655
No 183
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=42.82 E-value=41 Score=19.16 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=21.0
Q ss_pred CCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHH
Q 045953 52 PDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 52 ~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lek 93 (129)
+++.-.|..|| ..++|-.-...++.+|..+++
T Consensus 4 dk~rifmEnV~----------AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 4 DKERIFMENVG----------AVQELCKLTDNLETRIDELER 35 (36)
T ss_pred cHHHHHHHHHH----------HHHHHHHHhccHHHHHHHHhh
Confidence 44555666776 346777777777777777653
No 184
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.72 E-value=2.4e+02 Score=24.89 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=19.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.+.+....+...+..|.+.+.....++......|++
T Consensus 393 eeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 393 EEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555543
No 185
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.70 E-value=2.4e+02 Score=24.89 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=13.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
+.+.++.....+......|.+.-.++...|..+
T Consensus 391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444443
No 186
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.33 E-value=76 Score=26.57 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=16.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
.++++++..++..+..+++....+..++.+++..+
T Consensus 154 s~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 154 SELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444444444444444444444443
No 187
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=42.29 E-value=2.2e+02 Score=24.29 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q 045953 84 SESAIAALQASKEYLEKQKAEVESNLAELLQQDPGL 119 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~ 119 (129)
+-.+.+.|.++.+.++.++++++.++.+++..=|++
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333445556666666677777777777776654443
No 188
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.83 E-value=59 Score=24.26 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQ 101 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~ 101 (129)
+-+++|+++.+..+.+++.|.+|-+.+++.
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444555555555555444443
No 189
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.76 E-value=1.5e+02 Score=23.44 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=30.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCChhHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESN-LAELLQQDPGLAQQ 122 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~-Lrell~~~~~~~~~ 122 (129)
.+-+..+.+-.+-|+|+.+||++++.+--.+ =+-.....+++|-+
T Consensus 20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~Alq 65 (221)
T KOG1656|consen 20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQ 65 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4455666777788899999999999877344 44444445566544
No 190
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=41.60 E-value=34 Score=20.54 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045953 21 TGKMKQVQNQMRNKEGEKKRAY 42 (129)
Q Consensus 21 qqql~~v~~Q~~~~e~~~r~~~ 42 (129)
.+|+..+..|+..++......+
T Consensus 5 rqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 5 RQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 191
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=41.56 E-value=2.4e+02 Score=24.69 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDN 54 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~d 54 (129)
.+.+.+......+..+.+.+..+........+.+..++.-++||+.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~ 207 (563)
T TIGR00634 158 EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQ 207 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcC
Confidence 46677777778888899999999999999999999999999999999766
No 192
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=41.55 E-value=1.7e+02 Score=23.00 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHH
Q 045953 9 AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAI 88 (129)
Q Consensus 9 ~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i 88 (129)
.+.++..+..+...-...+......++.+-+.+.=+.+|.+.|-.+ ||+ ..+.+..+..++..+|.-|
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~E--------r~~----h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQE--------RMA----HVEELRQINQDINTLENII 69 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH----HHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888888888888777777777777433 121 1222333355555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045953 89 AALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 89 ~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
+..+..............+.+.
T Consensus 70 kqa~~er~~~~~~i~r~~eey~ 91 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYEEYK 91 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444444333
No 193
>PLN02939 transferase, transferring glycosyl groups
Probab=41.33 E-value=2.3e+02 Score=27.20 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=37.8
Q ss_pred hhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 63 RTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 63 rmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
.|.++.|-..++.+|.+- ...++++-.|+|....|+..+.+++..+-
T Consensus 235 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (977)
T PLN02939 235 NMLLKDDIQFLKAELIEV-AETEERVFKLEKERSLLDASLRELESKFI 281 (977)
T ss_pred hHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777654 55688999999999999999999998873
No 194
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.33 E-value=1.4e+02 Score=22.43 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
...++..++..+...+..|+.+...+-++|.+++..|..++
T Consensus 23 ~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 23 EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888888888888888888887
No 195
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=41.12 E-value=1e+02 Score=27.15 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=39.4
Q ss_pred CCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953 50 QLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 50 ~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
++.++.+..=-++|++ .+.-+++.++..+.+.++.+|..|+.+.+.|...+...
T Consensus 414 kl~e~~nsl~d~aK~~--~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~ 467 (489)
T KOG3684|consen 414 KLSEQANSLVDLAKTQ--NDMYDLLQELHSRQEELEKQIDTLESKLEALTASLSSL 467 (489)
T ss_pred HHHhhcccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555555666664 46678888999999999999999888888877776543
No 196
>PRK11519 tyrosine kinase; Provisional
Probab=41.11 E-value=2.8e+02 Score=25.20 Aligned_cols=27 Identities=7% Similarity=0.255 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhc-CCCCCchhhhhh
Q 045953 35 EGEKKRAYLTLEELR-QLPDNTNTYKSI 61 (129)
Q Consensus 35 e~~~r~~~lT~~EL~-~l~~dt~vYk~V 61 (129)
+.++...+....+|. ...|++|.|+++
T Consensus 317 ~~ql~~l~~~~~~l~~~y~~~hP~v~~l 344 (719)
T PRK11519 317 DAQLNELTFKEAEISKLYTKEHPAYRTL 344 (719)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 333333333333433 235566777654
No 197
>PRK04325 hypothetical protein; Provisional
Probab=40.75 E-value=99 Score=19.95 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=20.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
+.+|+.++.-.+.-|..|..-...-++.+..++.+++-+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665555555555555555444444444444443
No 198
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.57 E-value=1.6e+02 Score=22.22 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
...+....+.++..+..|..+.+.|++.+..+...+..+-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666677777777777777766666665443
No 199
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=40.54 E-value=1.8e+02 Score=25.88 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=27.9
Q ss_pred ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
..+.+.-.+++.+++..+..++..|+...+.+++.++.++
T Consensus 88 ~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 88 IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566677777777777777777777777777766554
No 200
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=40.53 E-value=2e+02 Score=23.43 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHH
Q 045953 2 SDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRL 81 (129)
Q Consensus 2 ~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~ 81 (129)
++.+++..+..++.++.+++.++....++....+++..+.+- .|+. |- .+..++ ++...+.
T Consensus 93 d~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~-------------L~~~-g~----is~~~~-~~~~~~~ 153 (370)
T PRK11578 93 DPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQR-------------LAKT-QA----VSQQDL-DTAATEL 153 (370)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHc-CC----CCHHHH-HHHHHHH
Confidence 455566666666666666666665555555554444433221 1111 10 122222 2233334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 82 KDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 82 ~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
...+.++..++.+...++.+++..+.++.
T Consensus 154 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 182 (370)
T PRK11578 154 AVKQAQIGTIDAQIKRNQASLDTAKTNLD 182 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555566666666555543
No 201
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.52 E-value=1.4e+02 Score=22.61 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=27.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
+.++..++..++.++..|+.+...+....+.++....+..+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777766666655443
No 202
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion]
Probab=40.38 E-value=14 Score=30.04 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=27.2
Q ss_pred HHhcCCCCCchhhhhhhhhhhccChHHHHHHHH
Q 045953 46 EELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQE 78 (129)
Q Consensus 46 ~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~ 78 (129)
-||...++.++.|++||..|+..-+.+=+..|.
T Consensus 54 Gelaa~g~~a~~YKsv~qaf~~iakneGI~GLQ 86 (320)
T KOG0755|consen 54 GELAARGPSARPYKSVGQAFSTIAKNEGIRGLQ 86 (320)
T ss_pred hhhhccCCccchhhhhhhhhhhhhcccchHHHh
Confidence 578888999999999999999887776555554
No 203
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.35 E-value=89 Score=27.46 Aligned_cols=43 Identities=9% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
..-.++|+++.+.+..+...+.++...++.++++++..++.+-
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555443
No 204
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.29 E-value=1.1e+02 Score=20.38 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQ 121 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~ 121 (129)
++.+.|+.++..+=+.|.-|.-..+-|..+=..+......+..++..|.+
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~ 53 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45667777777766666666666666655555555555555555444444
No 205
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=40.22 E-value=26 Score=24.16 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=23.7
Q ss_pred hhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 60 SIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 60 ~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
++|++|+..+......+..- ...+.++..|..-.......+..+...+..-+
T Consensus 11 a~G~~~~~~~~~~~~~~~~~--~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~ 62 (123)
T PF05524_consen 11 AIGPAFVLRPPEPEIPERHI--DDIEAEIERLEQALEKAREELEQLAERAESKL 62 (123)
T ss_dssp EEEEEEE---------TTB---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEecccCccccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46888887765532222211 45555556666555555555555555554433
No 206
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.21 E-value=1e+02 Score=23.28 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=37.5
Q ss_pred hhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 62 GRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 62 GrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
--+|.....+.--.++.+.+..++..+..+++.-.+|-+...++-..+.++
T Consensus 4 ~~~~~~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~ef 54 (200)
T cd07624 4 STMYLLKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEY 54 (200)
T ss_pred cchhhhcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666788888888888888888888887777777766666554
No 207
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=39.99 E-value=3.2e+02 Score=25.66 Aligned_cols=106 Identities=18% Similarity=0.281 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhcc----ChHHHHHHHHHHHhhHHHHHHHHH
Q 045953 17 MIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLE----PKSVLMNEQEQRLKDSESAIAALQ 92 (129)
Q Consensus 17 ~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~----~k~~i~~eL~e~~~~~e~~i~~Le 92 (129)
+..+.+++..+..-++..+..+.-.++..-.|.. ..-.++-+||+.. ..+.+.++...++..++.++..+-
T Consensus 348 LdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee-----~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~ 422 (961)
T KOG4673|consen 348 LDKTKKEIKMLNNALEAREAQLLADEIAKAMLEE-----EQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALT 422 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555444444444444434433 1233455666654 355677778888899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----cCChhHHHHHHhcc
Q 045953 93 ASKEYLEKQKAEVESNLAELL-----QQDPGLAQQIMSMS 127 (129)
Q Consensus 93 kq~~~Le~~l~e~e~~Lrell-----~~~~~~~~~~~~~~ 127 (129)
+.+..|.+..+.+...+.-.+ ..+..+-.+||+-|
T Consensus 423 kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EG 462 (961)
T KOG4673|consen 423 KERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEG 462 (961)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 888888888887766665443 44667777788765
No 208
>PRK00736 hypothetical protein; Provisional
Probab=39.85 E-value=98 Score=19.64 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=24.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
.+++..+|.++.=.+...+.|...+-..+..|..+-..=..|.++|.+
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555444455555443
No 209
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.58 E-value=3.7e+02 Score=26.15 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHH
Q 045953 13 IKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQ 92 (129)
Q Consensus 13 lq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Le 92 (129)
+-.++.+++.--..+..|+..+++++.++....+|.....+..+ --..|-.+-++=+.=+.+.+|++..+|+
T Consensus 260 mkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k--------~emad~ad~iEmaTldKEmAEERaesLQ 331 (1243)
T KOG0971|consen 260 MKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYK--------EEMADTADAIEMATLDKEMAEERAESLQ 331 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444555566777888899999999999888877643211 1223444445545555555666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045953 93 ASKEYLEKQKAEVESNL 109 (129)
Q Consensus 93 kq~~~Le~~l~e~e~~L 109 (129)
...+.+..++++++..|
T Consensus 332 ~eve~lkEr~deletdl 348 (1243)
T KOG0971|consen 332 QEVEALKERVDELETDL 348 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665555544
No 210
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.55 E-value=1e+02 Score=19.77 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.=+.+|+.++.-.+.-|..|..-...-++.+..++.+++-+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555555555555555555444
No 211
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=39.12 E-value=2.3e+02 Score=23.76 Aligned_cols=61 Identities=11% Similarity=0.229 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh
Q 045953 2 SDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT 64 (129)
Q Consensus 2 ~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm 64 (129)
+|...+-++.+.+..+.....++..+.+++......+..++-. .+.....+..-|..++..
T Consensus 85 D~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~--~l~~a~~~~~R~~~L~~~ 145 (352)
T COG1566 85 DPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQ--DLDQAQNELERRAELAQR 145 (352)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 5667788888889888888888888888888777666655554 344444567777777743
No 212
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=38.84 E-value=1.1e+02 Score=19.81 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEEL 48 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL 48 (129)
+...+|.+++..+-.+.++...+..|...+.+......-+.+-|
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55678888888888888888888888888888777666555444
No 213
>PRK06030 hypothetical protein; Provisional
Probab=38.78 E-value=1.4e+02 Score=21.25 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=28.7
Q ss_pred hhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 57 TYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 57 vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
.|..||+.|= .|.+++..-.+ +++..- .-..+....+.|+..++
T Consensus 71 sl~~IG~~FG-RDHSTV~haik-kIe~~~-~d~~lk~~v~~L~~~l~ 114 (124)
T PRK06030 71 PMNEVALAFG-RDRTTVGHACH-TVEDLR-DDAAFDARVSVLERIVN 114 (124)
T ss_pred CHHHHHHHHC-CChhHHHHHHH-HHHHHh-hCHHHHHHHHHHHHHHH
Confidence 5899999995 99999998887 444432 23344444444444443
No 214
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.72 E-value=1.4e+02 Score=24.42 Aligned_cols=38 Identities=34% Similarity=0.444 Sum_probs=16.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.++.++.+.++.+.+.+......|+....++...|.++
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 215
>PRK00295 hypothetical protein; Provisional
Probab=38.41 E-value=1e+02 Score=19.51 Aligned_cols=49 Identities=20% Similarity=0.155 Sum_probs=27.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
+.+++..+|.++.=.+...+.|...+-..+..|..+-..=..|+++|.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555565555555555555555543
No 216
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=38.38 E-value=1.1e+02 Score=21.00 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
+.+.+..=|.++.+.++.++..|+....+|+..+...+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (116)
T cd04769 76 PWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLK 113 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666777777888888888877777776665543
No 217
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.05 E-value=1.1e+02 Score=24.06 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 91 LQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 91 Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
.+++...|.++.++.....-.++.....|..++
T Consensus 177 ~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 177 AQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 218
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=37.94 E-value=2.4e+02 Score=23.59 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCC
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMR----NKEGEKKRAYLTLEELRQLPD 53 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~----~~e~~~r~~~lT~~EL~~l~~ 53 (129)
++|.+-|+++|..-....+++..+..-.. .+.+++++..-....|.++++
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~ 60 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKK 60 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36777788888777666666655544333 344445555555555555543
No 219
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=37.82 E-value=1.3e+02 Score=20.88 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------CchhhhhhhhhhhccChHHHHHHHHHHHhhHHH
Q 045953 22 GKMKQVQNQMRNKEGEKKRAYLTLEELRQLPD-------NTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSES 86 (129)
Q Consensus 22 qql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~-------dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~ 86 (129)
++|+.++.+|..+ ++.+-.++.+|.+-++ ....|+.--.-|+ ...+.|-.+|...+..+++
T Consensus 6 ~~L~~Idk~I~~l---L~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~-~~L~~V~~~Lr~qI~~L~e 73 (117)
T PF10280_consen 6 QQLNEIDKKIVSL---LQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFF-STLSSVEVELRRQIKYLEE 73 (117)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4566677766654 5677778888887655 4566666666666 4556666667666666654
No 220
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=37.73 E-value=92 Score=18.67 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=13.1
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
|+.+.++=|.+--+..+.+|..+.. ++.++|..=+.++.+-|.
T Consensus 2 d~~EAkelLqe~~d~IEqkiedid~-------qIaeLe~KR~~Lv~qHP~ 44 (46)
T PF08946_consen 2 DRAEAKELLQEHYDNIEQKIEDIDE-------QIAELEAKRQRLVDQHPR 44 (46)
T ss_dssp -------------THHHHHHHHHHH-------HHHHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHHHhHHHhHHHHHH-------HHHHHHHHHHHHHHhCCC
Confidence 3444444455555555555555444 444444444444444443
No 221
>PRK09039 hypothetical protein; Validated
Probab=37.50 E-value=2.4e+02 Score=23.37 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
.|+.....++..|...+.+....+.++.+++..|+.++..
T Consensus 148 aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 148 ALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555533
No 222
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.49 E-value=1.9e+02 Score=22.15 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhh--hccChHHHHHHHH----H
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTF--VLEPKSVLMNEQE----Q 79 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmF--v~~~k~~i~~eL~----e 79 (129)
|..-+...+.....++.++.....-+..+.....+..-+.++|..+.-+..+ ..--| |...++++..... +
T Consensus 60 L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~ev---L~qr~~kle~ErdeL~~kf~~~i~e 136 (201)
T PF13851_consen 60 LSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEV---LEQRFEKLEQERDELYRKFESAIQE 136 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666677777777777777777777777777777777433222 22222 3334555544433 3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
-...+..+.--|+++...|...++..+.+|.+++..
T Consensus 137 vqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 137 VQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778899999999999999999998865
No 223
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=37.40 E-value=10 Score=26.32 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=33.3
Q ss_pred hhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 58 YKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 58 Yk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
|..+.+=|=...++..++.+......+...+..|..+...|+.++....
T Consensus 11 F~~~~rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 11 FKKSMRGYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp --EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3333344566678888899999999888888888888888887766653
No 224
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.35 E-value=3.7e+02 Score=25.61 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHhccC
Q 045953 88 IAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSMSV 128 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~~~~ 128 (129)
.+...++...++..+...+.++..++..-++.|..+-++|.
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~ 841 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGS 841 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhc
Confidence 45555666667777777777888888777777777766653
No 225
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=37.12 E-value=1.2e+02 Score=21.02 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=21.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
-|......++.++..+....+.+...+....+.++.+
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666655544
No 226
>PRK02119 hypothetical protein; Provisional
Probab=37.00 E-value=1.2e+02 Score=19.61 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
=+.+|+.++.-.+.-|..|......-++.+..++.+++-+
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554444444444444
No 227
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.86 E-value=1e+02 Score=19.03 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=13.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e 104 (129)
.+...+..++.++..+......|+..++.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 228
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.49 E-value=2.8e+02 Score=23.83 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHH-HHHHHHhhHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMN-EQEQRLKDSES 86 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~-eL~e~~~~~e~ 86 (129)
+.|.+++.++..+.+++..+..++..+-...+.......+ +|++|..-...+... .|......+..
T Consensus 274 ~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~-------------~g~~~~~l~~~~~~~~~l~~~~~~~~~ 340 (503)
T KOG2273|consen 274 KEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAE-------------LGKALAQLSALEGETDELSEALSGLAK 340 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 4566777777777777777666666644444444444433 555554433333333 44444444444
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 045953 87 AIAALQASKEYL--EKQKAEVESNLAELL 113 (129)
Q Consensus 87 ~i~~Lekq~~~L--e~~l~e~e~~Lrell 113 (129)
-+..+..-.+.. .+........+++++
T Consensus 341 ~~~~~~~~~e~~~~~~~~~~~~~~l~~~i 369 (503)
T KOG2273|consen 341 VIESLSKLLEKLTAEKDSKKLAEQLREYI 369 (503)
T ss_pred HHHHHHHHHHHhhhhhhHHHhHHHHHHHH
Confidence 444333332222 333344444444444
No 229
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=36.34 E-value=1.7e+02 Score=21.45 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL 51 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l 51 (129)
+-+.+++.+.-..+......+..+..++..++.++....-+++.|.+-
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~ 49 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKS 49 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666676788888899999999999999999999998873
No 230
>PRK14629 hypothetical protein; Provisional
Probab=35.96 E-value=66 Score=22.19 Aligned_cols=24 Identities=4% Similarity=-0.035 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Q 045953 2 SDEANRAAFQEIKGRMIENTGKMK 25 (129)
Q Consensus 2 ~d~el~k~~~Elq~k~~~~qqql~ 25 (129)
++..+.|..+++|.++..+|..|.
T Consensus 4 ~~~~~mkqaq~mQ~km~~~Q~eL~ 27 (99)
T PRK14629 4 NPLDFLKNMSSFKDNIDNIKKEIS 27 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677888888888777776654
No 231
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=35.57 E-value=1.8e+02 Score=21.51 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCChhHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEY-------LEKQKAEVESNLAELLQQDPGLA 120 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~-------Le~~l~e~e~~Lrell~~~~~~~ 120 (129)
|.+=|++|.+.....+...+....- .++.+.++...-++++.....-|
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~a 103 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEI 103 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544444444444444 44444444444445554433333
No 232
>PRK11281 hypothetical protein; Provisional
Probab=35.53 E-value=4.3e+02 Score=25.79 Aligned_cols=99 Identities=9% Similarity=0.099 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhcCCCCCchhhhhhhhhhhc-----
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEK-----------KRAYLTLEELRQLPDNTNTYKSIGRTFVL----- 67 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~-----------r~~~lT~~EL~~l~~dt~vYk~VGrmFv~----- 67 (129)
.+|...+.+....+.+.|.++....+++......- ++..=....|...+++..-+..-.+....
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~ 203 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAL 203 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHH
Confidence 45666677777777777777777766665443322 22222233566654333335554444222
Q ss_pred ------------cChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953 68 ------------EPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 68 ------------~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l 102 (129)
.+-+...+-+..+.+.+..++..++.....|+..+
T Consensus 204 l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~i 250 (1113)
T PRK11281 204 LNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAI 250 (1113)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555556666666666555555444
No 233
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.42 E-value=1.1e+02 Score=18.74 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=28.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
.=...++.++..+..|+.....|...+..+...+..+.
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888887777776654
No 234
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.30 E-value=4.4e+02 Score=25.81 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCchhhh
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYL-TLEELRQLPDNTNTYK 59 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~l-T~~EL~~l~~dt~vYk 59 (129)
+.++....+...+.....++..|..-....+.++....- ...+|+=.+++..-|.
T Consensus 314 ~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~ 369 (1141)
T KOG0018|consen 314 TAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYE 369 (1141)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHH
Confidence 345666666666777777777777777777766665544 5556665555555554
No 235
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=34.88 E-value=3.6e+02 Score=24.70 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHH
Q 045953 13 IKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQ 92 (129)
Q Consensus 13 lq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Le 92 (129)
+-...-.....+..+...+......+.....+...|..... .-......-.+......-.++++..+...+..|+
T Consensus 180 ~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~ 254 (670)
T KOG0239|consen 180 LESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-----NYADLRRNIKPLEGLESTIKKKIQALQQELEELK 254 (670)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33334444555666666666655555555555555554322 1112344445556666666666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 93 ASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 93 kq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
+....+..........+.+.+..-..++.+|-
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 286 (670)
T KOG0239|consen 255 AELKELNDQVSLLTREVQEALKESNTLQSDLE 286 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777666555555543
No 236
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=34.84 E-value=1.7e+02 Score=20.94 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=29.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
..+|+.++..++-+.+.++.-.+.|-+.++-+|-.|+.-
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888877777777777777777776643
No 237
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=34.66 E-value=1.4e+02 Score=19.86 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEK 100 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~ 100 (129)
++...-|.++...++.++..|+....+|+.
T Consensus 72 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 72 EDLLEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555544
No 238
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=34.64 E-value=1.7e+02 Score=20.88 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=16.6
Q ss_pred hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 65 FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 65 Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
|+-.|...++ ++|.+.....+...+.-...++.-.++.+..|+
T Consensus 27 fl~kPi~~~l---~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~ 69 (141)
T PRK08476 27 WLYKPLLKFM---DNRNASIKNDLEKVKTNSSDVSEIEHEIETILK 69 (141)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333 333333333333333333333333333333333
No 239
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=34.48 E-value=3.3e+02 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 045953 90 ALQASKEYLEKQKAEVESNLAELLQQDP 117 (129)
Q Consensus 90 ~Lekq~~~Le~~l~e~e~~Lrell~~~~ 117 (129)
.|.+...-+..++++.++...+.+++..
T Consensus 407 ~l~knq~vw~~kl~~~~e~~~~~~~s~d 434 (493)
T KOG0804|consen 407 KLIKNQDVWRGKLKELEEREKEALGSKD 434 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555443
No 240
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=34.47 E-value=2.9e+02 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 87 AIAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 87 ~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
+++.|..+.+.+++++++++.++.+++..=|+
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444444555555566666666666655443
No 241
>smart00338 BRLZ basic region leucin zipper.
Probab=34.33 E-value=1.1e+02 Score=18.66 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=24.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
...+..++.++..|+.....|..++..++..+..+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777777666554
No 242
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=34.29 E-value=1.3e+02 Score=19.22 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=29.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQVQ-----NQMRNKEGEKKRAYLTLEE 47 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~v~-----~Q~~~~e~~~r~~~lT~~E 47 (129)
+|++||..-+.++...+..+.-+-.... .++..+.+++.++.-.+.|
T Consensus 12 ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~e 63 (69)
T PRK14549 12 MSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQRE 63 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777764444333 3566666666665555444
No 243
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=34.00 E-value=1.8e+02 Score=20.83 Aligned_cols=99 Identities=12% Similarity=0.204 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHH
Q 045953 13 IKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQ 92 (129)
Q Consensus 13 lq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Le 92 (129)
++.++...-..++.+.--+...-..++..+.-+.|=.-+-+.-....+=..+|=+.---=+..+|.+-......|+.=+.
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~ 82 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFIS 82 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHH
Confidence 45566666666666655555444444443333333222222333444444556665555677888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045953 93 ASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 93 kq~~~Le~~l~e~e~~Lre 111 (129)
+..++++.++.+.+..+-.
T Consensus 83 ~Eikr~e~~i~d~q~e~~k 101 (120)
T KOG3478|consen 83 KEIKRLENQIRDSQEEFEK 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766544
No 244
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.78 E-value=1.6e+02 Score=20.40 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=28.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKR 40 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~ 40 (129)
|+.-+|-..|.++..++..+..++..+..++..+.-+-.+
T Consensus 1 Mdk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~ 40 (107)
T PF06156_consen 1 MDKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENAR 40 (107)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888888888888887777766554333
No 245
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=33.75 E-value=9.4 Score=24.66 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=13.6
Q ss_pred CchhhhhhhhhhhccCh
Q 045953 54 NTNTYKSIGRTFVLEPK 70 (129)
Q Consensus 54 dt~vYk~VGrmFv~~~k 70 (129)
+.++|-+-|.|||..|-
T Consensus 10 G~~I~PGtG~m~Vr~Dg 26 (66)
T COG2075 10 GKKIEPGTGIMYVRNDG 26 (66)
T ss_pred CCccCCCceEEEEecCC
Confidence 45688889999998874
No 246
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.51 E-value=1e+02 Score=26.76 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=47.8
Q ss_pred hhccChH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-hHHHH
Q 045953 65 FVLEPKS--VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDP-GLAQQ 122 (129)
Q Consensus 65 Fv~~~k~--~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~-~~~~~ 122 (129)
|...|.. ..+.+++-.+-.+-.-...|.++.+.|++.++.+-..+|..+...+ .+|..
T Consensus 217 f~~i~~~~~~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ 277 (439)
T KOG2911|consen 217 FSQIPSQDASIITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAIT 277 (439)
T ss_pred eccCCcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3444444 6688999999999999999999999999999999999998887654 66653
No 247
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.24 E-value=4.7e+02 Score=25.56 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHcCChhHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKA---EVESNLAE---LLQQDPGLAQQIM 124 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~---e~e~~Lre---ll~~~~~~~~~~~ 124 (129)
.++..+|.++......++..+..+.......+. ++..+|+| .++....|.+-|.
T Consensus 264 ~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~ 323 (1109)
T PRK10929 264 FKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALR 323 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 355667777777777777777766666554444 34444444 3455556555543
No 248
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.21 E-value=4.7e+02 Score=25.48 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------CCCchhhhhhhhhhhccChHHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL------------PDNTNTYKSIGRTFVLEPKSVLMN 75 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l------------~~dt~vYk~VGrmFv~~~k~~i~~ 75 (129)
+.-.|.+.+.....-.++.+..-.+.++..++.+.....+..+- |.....|++.--+|+..+.++-.+
T Consensus 759 ~~~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~ 838 (1072)
T KOG0979|consen 759 KNNIEAERKIEKLEDNISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMD 838 (1072)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHH
Confidence 34456666666666677777777777777777777766666531 234456777667777777666666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
+|+..+-.-..+...+..--.+.-.+++--+..|+
T Consensus 839 eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~ 873 (1072)
T KOG0979|consen 839 ELDQAITDELTRALKFENVNEDAVQQYEVREDELR 873 (1072)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 66665544444333333333333333333333333
No 249
>PF15456 Uds1: Up-regulated During Septation
Probab=33.13 E-value=1.8e+02 Score=20.72 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 045953 18 IENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEY 97 (129)
Q Consensus 18 ~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~ 97 (129)
..+...+..+...+. ++..+|.+...+.-+..-|+.. .-|. .+-...-++....++.++..+..+...
T Consensus 32 ~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~-------~~~~----~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 32 RSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRR-------ARFS----RESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccc-------cCCC----cchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444 6677777777766666544322 1222 222333344444555555555555555
Q ss_pred HHHHHHHHHHHH
Q 045953 98 LEKQKAEVESNL 109 (129)
Q Consensus 98 Le~~l~e~e~~L 109 (129)
++..+.+.+..|
T Consensus 100 le~R~~~~~~rL 111 (124)
T PF15456_consen 100 LENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 250
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=33.12 E-value=1.5e+02 Score=22.95 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=32.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
.-+.++.+...+++.-+.|.+.++.--++++.|+....++|+.|.+
T Consensus 12 ~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~ 57 (224)
T cd07591 12 EFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISS 57 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777777777777777888888877777776653
No 251
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.98 E-value=3.5e+02 Score=23.97 Aligned_cols=88 Identities=19% Similarity=0.138 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 045953 20 NTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLE 99 (129)
Q Consensus 20 ~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le 99 (129)
+-+-|..+..++...+- ....-..||+++|+|++.|.-.-|+- --...+-..+.++-..-.+...|.++++.+.
T Consensus 350 leqdL~a~~eei~~~ee---l~~~Lrsele~lp~dv~rk~ytqrik---Ei~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 350 LEQDLEAVDEEIESNEE---LAEKLRSELEKLPDDVQRKVYTQRIK---EIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHhhHH---HHHHHHHHHhcCCchhHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443221 23344578999998877654444431 0011122233344444445555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 045953 100 KQKAEVESNLAELL 113 (129)
Q Consensus 100 ~~l~e~e~~Lrell 113 (129)
..+.-+=.=.-+++
T Consensus 424 e~L~Rsfavtdell 437 (521)
T KOG1937|consen 424 EALNRSFAVTDELL 437 (521)
T ss_pred HHHhhhHHHHHHHH
Confidence 55543333333333
No 252
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.88 E-value=2.1e+02 Score=21.28 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
..+-.+.++++++.++.++++.+...+.|.++.+.++.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444556666666666666666666666666655543
No 253
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=32.77 E-value=1.1e+02 Score=20.54 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=27.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
.++|...++.++..+...+.+.+.|+.+.+.+..
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k 36 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEK 36 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888877764
No 254
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=32.45 E-value=1.5e+02 Score=22.96 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=17.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 79 QRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
.+...++.+++.++++...+++++...+..++.
T Consensus 193 ~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~ 225 (239)
T PF07195_consen 193 SRIDSLNSQIKSLDKQIEDLEERLESKEERLRK 225 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544
No 255
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.40 E-value=1.3e+02 Score=18.71 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045953 84 SESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e 104 (129)
+|.++.+++.....++++.++
T Consensus 5 lEn~~~~~~~~i~tvk~en~~ 25 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEE 25 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 256
>PRK06798 fliD flagellar capping protein; Validated
Probab=32.21 E-value=98 Score=26.60 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=17.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 79 QRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
.+.+.++.+|+.++++.+.++.+++..+..++
T Consensus 379 ~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~ 410 (440)
T PRK06798 379 ERSKSIDNRVSKLDLKITDIDTQNKQKQDNIV 410 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554444
No 257
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=31.99 E-value=1.9e+02 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
+.+.-+.+.+.+...+..|++....|..++.+.+..|+.+
T Consensus 242 YRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 242 YRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677788888888888888888888888888765
No 258
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.96 E-value=3.4e+02 Score=23.48 Aligned_cols=33 Identities=9% Similarity=0.181 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 9 AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRA 41 (129)
Q Consensus 9 ~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~ 41 (129)
.+.+++.++..++..+..+..++..++..+...
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555443
No 259
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.82 E-value=1.6e+02 Score=19.85 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l 102 (129)
+....-|.++...++.+|..|+....+|+..+
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 78 PERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666655544
No 260
>PRK04654 sec-independent translocase; Provisional
Probab=31.82 E-value=2.1e+02 Score=22.52 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=24.3
Q ss_pred hhhhhhhhhh--ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 57 TYKSIGRTFV--LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 57 vYk~VGrmFv--~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
+-|.+|+.+- +.....+.+++....+. ..|.+....+...+.+...+++..++
T Consensus 28 ~aRtlGk~irk~R~~~~~vk~El~~El~~-----~ELrk~l~~~~~~i~~~~~~lk~~~~ 82 (214)
T PRK04654 28 AARFAGLWVRRARMQWDSVKQELERELEA-----EELKRSLQDVQASLREAEDQLRNTQQ 82 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777642 23345555555554332 22333333333344444444444433
No 261
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.74 E-value=4.9e+02 Score=25.28 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
..+..++......++.+.+.++.....++..+..++..++.
T Consensus 833 ~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~ 873 (1201)
T PF12128_consen 833 QELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRR 873 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556666666666666666666655553
No 262
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=31.74 E-value=1.3e+02 Score=18.74 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=17.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKM 24 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql 24 (129)
||++||.+.+.++...+.++.-+.
T Consensus 9 ls~~eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 9 LSVEELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888777776443
No 263
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=31.67 E-value=3.9e+02 Score=24.14 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 84 SESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
+..++..+..+...|+.++.+.+..+.
T Consensus 343 ~~~~~~~a~~~~~~L~~~l~~~~~~~~ 369 (754)
T TIGR01005 343 LLMQADAAQARESQLVSDVNQLKAASA 369 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544443
No 264
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=31.52 E-value=1.7e+02 Score=19.86 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045953 84 SESAIAALQASKEYLEKQKAEVESNLAELLQQD 116 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~ 116 (129)
++......+......++.+.+++....+++...
T Consensus 42 a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a 74 (132)
T PF00430_consen 42 AEELKEEAEQLLAEYEEKLAEAREEAQEIIEEA 74 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555556666666655555443
No 265
>PRK01203 prefoldin subunit alpha; Provisional
Probab=31.35 E-value=1.3e+02 Score=21.85 Aligned_cols=92 Identities=11% Similarity=0.196 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhh----h-hhhhcc-----------ChHH----------
Q 045953 19 ENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSI----G-RTFVLE-----------PKSV---------- 72 (129)
Q Consensus 19 ~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~V----G-rmFv~~-----------~k~~---------- 72 (129)
+.-.+++.+.+|++.+..++.-.+.+..++.. .....++. | .++|.- |.+.
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~---~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~ 80 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQ---TISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVY 80 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeE
Confidence 45679999999999999999999999999854 22233332 2 245532 2222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
+....+++++.+..+++.|++-.......++.+++++.++.
T Consensus 81 VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 81 IAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566677777777777777777777777777777777665
No 266
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=31.33 E-value=2.1e+02 Score=20.95 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=23.0
Q ss_pred hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcC
Q 045953 65 FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYL-------EKQKAEVESNLAELLQQ 115 (129)
Q Consensus 65 Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~L-------e~~l~e~e~~Lrell~~ 115 (129)
|+..| +.+-|++|.+.....+...++..... +..+.++.....+++..
T Consensus 38 ~l~kp---i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~ 92 (175)
T PRK14472 38 IAWGP---ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIRE 92 (175)
T ss_pred HhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 44444555555555555555544444 44444444444444443
No 267
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=31.31 E-value=1.3e+02 Score=25.90 Aligned_cols=32 Identities=3% Similarity=0.006 Sum_probs=20.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.+.+..+|+.|+++.+.++.+++..++.++.
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~ 438 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDATIARYKA 438 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666766666666666666666553
No 268
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.29 E-value=4.5e+02 Score=24.67 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~ 84 (129)
+|-+-|++++.+...|...++.+..-|.++.-.+|..--+..-|..|-==+.-|.++|.|-=..+..++..-|..-..-+
T Consensus 83 eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll 162 (793)
T KOG2180|consen 83 ELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLL 162 (793)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHH
Confidence 44455666666666666666666655555554444444444444444222457999999998888888888887766666
Q ss_pred H--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCChh
Q 045953 85 E--------SAIAALQASKEYLEKQKAE-VESNLAELLQQDPG 118 (129)
Q Consensus 85 e--------~~i~~Lekq~~~Le~~l~e-~e~~Lrell~~~~~ 118 (129)
+ .+|..|..+...+++.+.. .-+.+.++..+.+.
T Consensus 163 ~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~ 205 (793)
T KOG2180|consen 163 NHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGET 205 (793)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 5 3666666666666666543 34555566655443
No 269
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=30.68 E-value=2.5e+02 Score=21.49 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKR-------AYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQ 77 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~-------~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL 77 (129)
+|-+.+.-+...+..++.+|+....+...+++.++. +.-++.-|..+..|- +-++ .++|
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dk-------------nL~e-ReeL 123 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDK-------------NLAE-REEL 123 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------------Cchh-HHHH
Confidence 444556666666666666666666666666665552 222222222222221 1122 3455
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
..+...++..+..-+++...|+++++-...+++.-+
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql 159 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQL 159 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 555555555555555555555555555555554443
No 270
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.43 E-value=2.5e+02 Score=21.46 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
+.+=|++|.+.....+...++.....+..+.+.+..|.+.
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A 112 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENA 112 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666655555555555555544444443
No 271
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=30.38 E-value=2.2e+02 Score=26.35 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYL 98 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~L 98 (129)
.+.++++|.+....++.+...+++....+
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~ 546 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEA 546 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444444444444433333
No 272
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=30.24 E-value=3.2e+02 Score=22.69 Aligned_cols=80 Identities=23% Similarity=0.210 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 31 MRNKEGEKKRAYLTLEELRQ-LPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 31 ~~~~e~~~r~~~lT~~EL~~-l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
+..+..++...+.-+.+|.. ..|++|....+-.- +..-+..+..++..-...+......+..+...|..++++.+..+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~-i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 334 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAE-INSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKV 334 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555533 56778877765432 11112222222222233333444455555555555555555444
Q ss_pred HH
Q 045953 110 AE 111 (129)
Q Consensus 110 re 111 (129)
..
T Consensus 335 ~~ 336 (444)
T TIGR03017 335 LE 336 (444)
T ss_pred HH
Confidence 43
No 273
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=30.17 E-value=1.4e+02 Score=19.96 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhcc------ChHHHHHHHHH
Q 045953 22 GKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLE------PKSVLMNEQEQ 79 (129)
Q Consensus 22 qql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~------~k~~i~~eL~e 79 (129)
..++.+..++..+.-.+-...++.-=|.+||++ |+++...+.-. +.+.++..|..
T Consensus 46 ~~~~~l~~~L~~~g~~i~d~~~~~~lL~sLP~s---y~~~~~~l~~~~~~~~~tl~~v~~~L~~ 106 (119)
T PF14227_consen 46 NEFRSLVNQLKSLGVPIDDEDKVIILLSSLPPS---YDSFVTALLYSKPEDELTLEEVKSKLLQ 106 (119)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHcCCHh---HHHHHHHHHccCCCCCcCHHHHHHHHHH
Confidence 345556666667777777888888899999975 88888765443 34555555554
No 274
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=30.03 E-value=96 Score=20.35 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lek 93 (129)
-...+++|-+..+.+++||.+||+
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 40 DEQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888875
No 275
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.55 E-value=1.9e+02 Score=20.99 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhhhhh--hh-ccC-----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 38 KKRAYLTLEELRQLPDNTNTYKSIGRT--FV-LEP-----KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 38 ~r~~~lT~~EL~~l~~dt~vYk~VGrm--Fv-~~~-----k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
...+..+++.|.. .+.-+.+..|+. |+ ..+ .++-...++.++..+..++..|......|+..+.
T Consensus 32 K~~v~k~Ld~L~~--~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 32 KTAVQKALDSLVE--EGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHh--CCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777765 356677888884 22 222 2223444444455555555444444444444443
No 276
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=29.54 E-value=2.3e+02 Score=20.76 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
|.+=|++|.+.....+...++.....+..+.+.+..|.+.
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a 83 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQA 83 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655555555555555443
No 277
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.41 E-value=32 Score=26.45 Aligned_cols=90 Identities=13% Similarity=0.237 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------h-------cCCCCCchhhhhhhh-hhhccChHHHHHHHHHHH
Q 045953 22 GKMKQVQNQMRNKEGEKKRAYLTLEE------------L-------RQLPDNTNTYKSIGR-TFVLEPKSVLMNEQEQRL 81 (129)
Q Consensus 22 qql~~v~~Q~~~~e~~~r~~~lT~~E------------L-------~~l~~dt~vYk~VGr-mFv~~~k~~i~~eL~e~~ 81 (129)
++...+..+|-..+..+..+..-... | ..+||-.+||=-+|- ..+.-|.++...=|+..+
T Consensus 58 a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl 137 (187)
T KOG3313|consen 58 AQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNL 137 (187)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhH
Confidence 44555666666666666665543332 1 124666678888886 667789999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 82 KDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 82 ~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
.++...+..++.-..||..++.-+|-|+-.
T Consensus 138 ~sa~k~l~~~~~DldfLrdQvTTtEVN~Ar 167 (187)
T KOG3313|consen 138 TSAVKSLDVLEEDLDFLRDQVTTTEVNMAR 167 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhhceeeeeeeee
Confidence 999999999999999999998777665543
No 278
>PRK00587 hypothetical protein; Provisional
Probab=29.37 E-value=1e+02 Score=21.15 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045953 5 ANRAAFQEIKGRMIENTGKM 24 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql 24 (129)
++.|.++++|.++...|..|
T Consensus 5 ~lmkqaqkmQ~km~~~QeeL 24 (99)
T PRK00587 5 KLAQQLKKMQNTMEKKQKEF 24 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443
No 279
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.24 E-value=4.2e+02 Score=23.78 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHH---HHHHHHHHhh
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVL---MNEQEQRLKD 83 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i---~~eL~e~~~~ 83 (129)
.+-..+|......+..+...+..++..++.++...+-....|..-.. .+-.+-+.+ ..-.+.+ ..++..++..
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k--el~~~~e~l--~~E~~~L~~q~~e~~~ri~~ 224 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK--ELTESSEEL--KEERESLKEQLAEARQRIRE 224 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666666665554321 122222221 1112222 2344555666
Q ss_pred HHHHHHHHHHHH
Q 045953 84 SESAIAALQASK 95 (129)
Q Consensus 84 ~e~~i~~Lekq~ 95 (129)
++.+|.++..+.
T Consensus 225 LEedi~~l~qk~ 236 (546)
T PF07888_consen 225 LEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 280
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=29.17 E-value=1.2e+02 Score=21.60 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045953 94 SKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 94 q~~~Le~~l~e~e~~Lrell 113 (129)
.-..|..++.+....+.++.
T Consensus 70 ~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 70 ELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 281
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=29.14 E-value=3.2e+02 Score=22.29 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHH
Q 045953 5 ANRAAFQEIKGRMIEN--------TGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNE 76 (129)
Q Consensus 5 el~k~~~Elq~k~~~~--------qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~e 76 (129)
++-+.+.+.|+++.-. ..++..+.++...+..++..-+...-|+- |.+..|--.+|+--+.....++..-
T Consensus 27 e~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~peii--~~n~~VL~~lgkeelqkl~~eLe~v 104 (268)
T PF11802_consen 27 ELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEII--PLNPEVLLTLGKEELQKLISELEMV 104 (268)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666665433 45666667777777777766666555543 5566788899998666665555554
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 045953 77 QEQRLKDSESAIAALQASKEYLEK 100 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~ 100 (129)
|.--....+.--..|++.+++|..
T Consensus 105 Ls~~q~KnekLke~LerEq~wL~E 128 (268)
T PF11802_consen 105 LSTVQSKNEKLKEDLEREQQWLDE 128 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555443
No 282
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=29.06 E-value=3e+02 Score=22.99 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 045953 5 ANRAAFQEIKGRMIE-----NTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP 52 (129)
Q Consensus 5 el~k~~~Elq~k~~~-----~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~ 52 (129)
+++++++++-..... |+..+..+...+..++|+.++.+..+.+|.+-|
T Consensus 267 ~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 267 RLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEANP 319 (320)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 456666666555544 467778888888889999999888888887654
No 283
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=28.89 E-value=2e+02 Score=19.95 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh-hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 31 MRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT-FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 31 ~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm-Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
+.+..-.+.......+-|-.+.++.+-++.++|. |-+=+-++ .=..+..+.+|..|..+..+.-..++.+-..|
T Consensus 8 l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNlte-----sitle~ve~Ei~~lQ~qL~~~ldeYE~~VrrL 82 (99)
T PF11083_consen 8 LTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTE-----SITLEQVEKEIRELQNQLGLYLDEYEKLVRRL 82 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455566677787788888888885 22211111 12345566677777777777666666666665
Q ss_pred HHHH
Q 045953 110 AELL 113 (129)
Q Consensus 110 rell 113 (129)
-..+
T Consensus 83 E~fv 86 (99)
T PF11083_consen 83 EKFV 86 (99)
T ss_pred HHHH
Confidence 5444
No 284
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.80 E-value=2.5e+02 Score=23.62 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=29.6
Q ss_pred ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
....++....|+.-...+...+.++++.++||..+++.+-...|...
T Consensus 233 ~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~ 279 (359)
T PF10498_consen 233 ESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQ 279 (359)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33445555666666666666667777777777777766666555544
No 285
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=28.50 E-value=1.4e+02 Score=18.11 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=16.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQ 26 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~ 26 (129)
||++||.+.+.++...+..+.-+...
T Consensus 7 ls~~eL~~~l~elk~eL~~Lr~q~~~ 32 (58)
T PF00831_consen 7 LSDEELQEKLEELKKELFNLRFQKAT 32 (58)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777766666555443
No 286
>PF13864 Enkurin: Calmodulin-binding
Probab=28.42 E-value=1.9e+02 Score=19.36 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAA---------LQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~---------Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.+..+++.|+.+.+.+..+... ..+.+..|+++|.+++..|.-+
T Consensus 41 ER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 41 ERQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777889999998888887765 5678889999999999988644
No 287
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=28.42 E-value=28 Score=19.54 Aligned_cols=10 Identities=20% Similarity=0.677 Sum_probs=7.8
Q ss_pred chhhhhhhhh
Q 045953 55 TNTYKSIGRT 64 (129)
Q Consensus 55 t~vYk~VGrm 64 (129)
+++|++||+.
T Consensus 14 ak~fkgvgk~ 23 (37)
T PF08025_consen 14 AKFFKGVGKV 23 (37)
T ss_pred HHHHHHHHHH
Confidence 5688888875
No 288
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=28.38 E-value=2.2e+02 Score=24.46 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=27.1
Q ss_pred HHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 76 EQEQRLKDSESAIAALQ----ASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Le----kq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
.|..+++.++.+|..++ +.+++|.++|...+.-|-.|=++...|.++|
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555433 3444566666666666666665565665554
No 289
>PHA01750 hypothetical protein
Probab=28.22 E-value=1.7e+02 Score=18.98 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESN 108 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~ 108 (129)
++.+.+=.+.+...+-.+|..+.++...|+.++++....
T Consensus 33 kdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 33 KDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344444444455555566666666666666666655544
No 290
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=28.21 E-value=2e+02 Score=19.69 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=24.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 045953 81 LKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDP 117 (129)
Q Consensus 81 ~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~ 117 (129)
...-..-+....+....++.+-++..+.|+.++...|
T Consensus 55 ~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~ 91 (110)
T PF10828_consen 55 LQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDP 91 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 3333444555666667777777888888888887644
No 291
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=27.99 E-value=3e+02 Score=21.57 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQ 121 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~ 121 (129)
.+..+..+.++.+.++.+-.-.++...+|++...+++..+-..-..-..+..
T Consensus 142 ~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~ 193 (205)
T KOG1003|consen 142 YEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKK 193 (205)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHH
Confidence 5566677777777788888888888888888888887777665444333333
No 292
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.98 E-value=5.9e+02 Score=25.00 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=28.0
Q ss_pred hhhhhh-hhccChHHHHHH---HHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 045953 59 KSIGRT-FVLEPKSVLMNE---QEQRLKDSESAIAALQASK--EYLEKQKAEVESNLAEL 112 (129)
Q Consensus 59 k~VGrm-Fv~~~k~~i~~e---L~e~~~~~e~~i~~Lekq~--~~Le~~l~e~e~~Lrel 112 (129)
..+|-. |++.-+.++..+ |-+..+.+++.+..|.++- ..++.++=.+...|-.|
T Consensus 254 erlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm 313 (1195)
T KOG4643|consen 254 ERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDM 313 (1195)
T ss_pred hhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHH
Confidence 344443 666666666665 4455555565555555554 34444444444444443
No 293
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.86 E-value=2.3e+02 Score=20.32 Aligned_cols=37 Identities=3% Similarity=0.222 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
+.+..++++..+..++..+...-.++...+..++..|
T Consensus 83 i~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 83 ISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444
No 294
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.76 E-value=1.5e+02 Score=19.40 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=28.0
Q ss_pred cChHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 045953 68 EPKSVLMNEQEQRLKDSESAIAA---LQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 68 ~~k~~i~~eL~e~~~~~e~~i~~---Lekq~~~Le~~l~e~e~~Lr 110 (129)
.|.+.....|+.+...|..-|.. +....+..+..+++++.+++
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~ 69 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIR 69 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHH
Confidence 45677778888888888888877 44455555555555555443
No 295
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.72 E-value=2.9e+02 Score=21.45 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=21.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l 102 (129)
-+++.++.....+|+.++.+..||+.+.
T Consensus 165 l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 165 LEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777778888888888888887765
No 296
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.63 E-value=1.8e+02 Score=19.06 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRL 81 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~ 81 (129)
.|...+..+..+.......+..+...+..++.....+. ..+. .|=.--..|+..-+..++.+|+...
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~I~-------~~f~~l~~~L~~~e~~ll~~l~~~~ 70 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVE---AQIK-------AAFDELRNALNKRKKQLLEDLEEQK 70 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655555555543322221 1111 1112223456666777777776654
No 297
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.62 E-value=2.8e+02 Score=21.10 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lek 93 (129)
.++....+|+++++.++.+|..|+.
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i~~le~ 141 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEIQRLEE 141 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666655543
No 298
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=27.51 E-value=1.2e+02 Score=19.85 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lek 93 (129)
....++|-+..+.+++||.+||+
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777777888888887775
No 299
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.48 E-value=1.7e+02 Score=20.10 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=23.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
..++..++..++.++..++.+...|..+++.+++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4566667777777777777777777777766554
No 300
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.29 E-value=2.2e+02 Score=21.99 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCCCCchhhhhhhhh---hhccC-----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 39 KRAYLTLEELRQLPDNTNTYKSIGRT---FVLEP-----KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESN 108 (129)
Q Consensus 39 r~~~lT~~EL~~l~~dt~vYk~VGrm---Fv~~~-----k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~ 108 (129)
.-+..|++-|..- +.-.++..|+- |+-.| .++-..-|+.++..+++.+.+|...-.|++..++.+.++
T Consensus 40 tavqk~Ld~La~~--Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~ 115 (201)
T KOG4603|consen 40 TAVQKTLDQLAQQ--GKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSA 115 (201)
T ss_pred hHHHHHHHHHHHc--CchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777754 45567777873 33332 233344555555556655555555555555555544443
No 301
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.29 E-value=3.6e+02 Score=22.34 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCC
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEG----EKKRAYLTLEELRQLP 52 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~----~~r~~~lT~~EL~~l~ 52 (129)
.|+-++++++.+++.+..+|+.|.+--..+.. -+.+.+.|.+-|+.|.
T Consensus 109 vlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 109 VLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999887776544 3444555555565553
No 302
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=27.13 E-value=1.7e+02 Score=18.43 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=34.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 045953 60 SIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEY-LEKQKAEVESNLA 110 (129)
Q Consensus 60 ~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~-Le~~l~e~e~~Lr 110 (129)
.+|-+|-..+-.++.+.+.+..+.+-..+..+-..-.. +..++.+.-++++
T Consensus 14 ~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 65 (74)
T PF12732_consen 14 AAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEETADEAK 65 (74)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888899988888888877766655444 5555555444433
No 303
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.08 E-value=97 Score=25.47 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=36.4
Q ss_pred ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH
Q 045953 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQ 122 (129)
Q Consensus 67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~ 122 (129)
..|+..-+.++....+..+..+...+.....++.++..++.++.+....+..+..+
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666677777777777777777777777777666655555443
No 304
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=26.90 E-value=2.1e+02 Score=19.45 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEK 100 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~ 100 (129)
+.+..-|.++...++.+|..|.....+|..
T Consensus 80 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 80 PDLLAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666655544
No 305
>PRK09458 pspB phage shock protein B; Provisional
Probab=26.81 E-value=1.2e+02 Score=20.03 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lek 93 (129)
-....++|-++.+..++||.+||+
T Consensus 40 d~~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 40 EQQRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888875
No 306
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.81 E-value=2.9e+02 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=11.7
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQAS 94 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq 94 (129)
+.+.++.+|.+....++.....+++.
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~ 537 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKL 537 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444444433333
No 307
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=26.75 E-value=21 Score=31.18 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCC----chhhhhhhhh--hhccChHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHH
Q 045953 38 KKRAYLTLEELRQLPDN----TNTYKSIGRT--FVLEPKSVLMNEQEQRLKDSESAIAALQASK-------EYLEKQKAE 104 (129)
Q Consensus 38 ~r~~~lT~~EL~~l~~d----t~vYk~VGrm--Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~-------~~Le~~l~e 104 (129)
.+....+..||++|-.. +...-++|++ ||..|.+.+..+|.-=...+..-...|...+ +-|..+|.+
T Consensus 427 ~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~e 506 (539)
T PF10243_consen 427 KKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAE 506 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 45566677777777433 5666789996 8999999998888755555444444444333 234444444
Q ss_pred HHHHHHH
Q 045953 105 VESNLAE 111 (129)
Q Consensus 105 ~e~~Lre 111 (129)
++.+|.+
T Consensus 507 le~~I~~ 513 (539)
T PF10243_consen 507 LEQQIKD 513 (539)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444443
No 308
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=26.73 E-value=2.3e+02 Score=19.88 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045953 90 ALQASKEYLEKQKAEVESNLAELLQQD 116 (129)
Q Consensus 90 ~Lekq~~~Le~~l~e~e~~Lrell~~~ 116 (129)
..+......+..+.+....-++++...
T Consensus 44 ea~~~~~e~~~~l~~A~~ea~~i~~~a 70 (147)
T TIGR01144 44 EAALAQKKAQVILKEAKDEAQEIIENA 70 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555433
No 309
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.69 E-value=64 Score=28.41 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=19.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
+++.++.++..|+++...+.+++...+.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 7777777777777777777666666554
No 310
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=26.67 E-value=17 Score=26.42 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.0
Q ss_pred CchhhhhhhhhhhccChH
Q 045953 54 NTNTYKSIGRTFVLEPKS 71 (129)
Q Consensus 54 dt~vYk~VGrmFv~~~k~ 71 (129)
+.++|-|=|+|||..|-.
T Consensus 11 G~kIyPG~G~~fVR~DGk 28 (131)
T PRK14891 11 GEEIEPGTGTMFVRKDGT 28 (131)
T ss_pred CCcccCCCCcEEEecCCC
Confidence 578999999999987743
No 311
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=26.56 E-value=2e+02 Score=23.47 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=27.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
.+..+.+.++..++.+.+....+++.++..++.|..+-.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455667777777777777777777777777777765543
No 312
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.56 E-value=2.3e+02 Score=19.85 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYL 43 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~l 43 (129)
|+.-+|-..|.++..++..+..++..+..++..+.-+-.+..+
T Consensus 1 Mdk~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 1 MDKKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888888888877766554444333
No 313
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=26.50 E-value=2.5e+02 Score=20.24 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.+=|++|.+.....+...++.....+....+.+..|.+
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~ 71 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKE 71 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555544444444444444433
No 314
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=26.34 E-value=2.1e+02 Score=24.46 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=42.4
Q ss_pred Cchhhhhhhhhhh---------ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 54 NTNTYKSIGRTFV---------LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 54 dt~vYk~VGrmFv---------~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
+++||=+.|.-.. .-+...+...|+++.+.|..+|+..++-+..+++.++..+
T Consensus 173 ~a~vYynl~sYl~Q~~~g~~~F~g~~~~a~~~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~ 234 (379)
T PF04518_consen 173 NASVYYNLSSYLGQSKMGTDNFPGSYFMALAKLEKEREQIRRDIKSCERAKAVLNKQLARVK 234 (379)
T ss_pred CcceeeehHHHHhhhccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666654433 3578999999999999999999999999999988877654
No 315
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=26.28 E-value=2.3e+02 Score=19.71 Aligned_cols=40 Identities=23% Similarity=0.117 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
+.+=|++|.+.....+..-+......+..+.+.+..|.+.
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a 69 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASA 69 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555554443
No 316
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=26.27 E-value=1.9e+02 Score=18.90 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEK 38 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~ 38 (129)
+.+.++..+-..+...|..+..||-.+|..-
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~Y 32 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETSY 32 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777766543
No 317
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=26.22 E-value=3.2e+02 Score=23.78 Aligned_cols=62 Identities=23% Similarity=0.282 Sum_probs=0.0
Q ss_pred hccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------ChhHHHHHHhccC
Q 045953 66 VLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ-------DPGLAQQIMSMSV 128 (129)
Q Consensus 66 v~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~-------~~~~~~~~~~~~~ 128 (129)
++.+.+++......+...+..+|..|+.+-..+..++ +......+.+++ +|.+++.+.+-.|
T Consensus 29 ~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L-~Nrk~~~~~L~~~i~~i~ipP~lI~~I~~~~v 97 (508)
T PF04129_consen 29 ILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKL-KNRKAVEEKLSPFIDDIVIPPDLIRSICEGPV 97 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHcCCHHHHHhHhcCCC
No 318
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=26.17 E-value=3.5e+02 Score=22.61 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
++.+.+-.....+...+..|.+.-++|+....++..+|.+++..+..+=..|..
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~ 183 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYA 183 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677788888999999999999999999999999999999887777666654
No 319
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=26.07 E-value=2.3e+02 Score=19.58 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
....+.++...++.++..|+....+|...+....
T Consensus 81 ~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~ 114 (118)
T cd04776 81 MLEKIEKRRAELEQQRRDIDAALAELDAAEERCR 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554443
No 320
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=25.94 E-value=2.9e+02 Score=23.88 Aligned_cols=89 Identities=16% Similarity=0.237 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCchhhhhhhhhhhccC-------hHHHHHHHHHHH
Q 045953 15 GRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL------PDNTNTYKSIGRTFVLEP-------KSVLMNEQEQRL 81 (129)
Q Consensus 15 ~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l------~~dt~vYk~VGrmFv~~~-------k~~i~~eL~e~~ 81 (129)
.++.+=|+.|+.-..-+.-+...+..+.=|..-++.. .+...-.+++.+.++..| ++.++.+...-.
T Consensus 285 ~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~~~r~~~~~~~~~pg~~~~~~~~~VL~EV~aL~ 364 (424)
T PF03915_consen 285 QKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQCTEEQEKSPSRSRNRPVANLPIPEPGEDPHEARDQVLGEVRALQ 364 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccCCCCCCCCCChhhHHHHHHHHHHhcC
Confidence 3344555556655556666777777766666655544 122223344434455544 567777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 045953 82 KDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 82 ~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
=.-+.|++++++.++--++.++
T Consensus 365 PDHE~RLeAIerAEKlRqkele 386 (424)
T PF03915_consen 365 PDHESRLEAIERAEKLRQKELE 386 (424)
T ss_dssp ----------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999888877776
No 321
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=25.87 E-value=2.7e+02 Score=20.42 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q 045953 85 ESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~ 120 (129)
+......+....-.+..+.++...-.+++..-..-|
T Consensus 66 e~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eA 101 (167)
T PRK08475 66 QEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEA 101 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444455555555555554433333
No 322
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=25.72 E-value=4.3e+02 Score=24.19 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHH
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSES 86 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~ 86 (129)
+..+..++..-....+.+..+..++..++.....+.-...++..- -...|+.+|-. ..+|.+....+-+
T Consensus 226 ~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~~---------~~~L~~~~~~l~~ 294 (670)
T KOG0239|consen 226 RRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTRE--VQEALKESNTL---------QSDLESLEENLVE 294 (670)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 334445555555555555666666666665555555555444432 12233333322 4444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q 045953 87 AIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQ 121 (129)
Q Consensus 87 ~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~ 121 (129)
.. .-+.....|-.++-++.+|||-.-+-+|-+..
T Consensus 295 ~~-~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~ 328 (670)
T KOG0239|consen 295 KK-KEKEERRKLHNEILELKGNIRVFCRVRPLLPS 328 (670)
T ss_pred HH-HHHHHHHHHHHHHHHhhcCceEEEEecCCCcc
Confidence 44 44455566777777888888876666665443
No 323
>PF03496 ADPrib_exo_Tox: ADP-ribosyltransferase exoenzyme; InterPro: IPR003540 ADP-ribosylation is a posttranslational modification of proteins involving the addition of one or more ADP-ribose moieties [, ]. These reactions are involved in cell signaling and the control of many cell processes, including DNA repair and apoptosis [, ]. This entry represents an ADP-ribosyltransferase domain found in various proteins, including bacterial and viral toxins.; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 2WN7_A 2WN5_A 2WN6_A 2WN4_A 2WN8_A 3NTS_B 1OJQ_A 1OJZ_A 1GZF_D 2BOV_B ....
Probab=25.71 E-value=31 Score=25.50 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhcc
Q 045953 32 RNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLE 68 (129)
Q Consensus 32 ~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~ 68 (129)
..+...+..+..++..+ .+|++..|||++|-.++..
T Consensus 52 ~~~~~~I~~ld~al~k~-~~~~~i~vyRg~~~~~~~~ 87 (190)
T PF03496_consen 52 EDLKKQIKNLDSALSKL-PLPEDITVYRGVSLEAFGS 87 (190)
T ss_dssp HHHHHHHHHHHHHHCTS-BHSSEEEEEEEE-GGGGTG
T ss_pred HHHHHHHHHHHHHHhhC-CCCCCeEEEecCchhhccc
Confidence 34555566677777766 6788889999998766643
No 324
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=25.63 E-value=1.5e+02 Score=26.98 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHhcc
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSMS 127 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~~~ 127 (129)
+..+.+.++.+++.+.++.+.++.+++..+..++.-+..=-.+..+|.+.|
T Consensus 598 i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsqs 648 (661)
T PRK06664 598 IYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQS 648 (661)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 325
>PF10400 Vir_act_alpha_C: Virulence activator alpha C-term; InterPro: IPR018309 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response []. This entry represents the C-terminal domain.; PDB: 1YG2_A.
Probab=25.47 E-value=1.8e+02 Score=18.34 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=28.0
Q ss_pred hhhhhhcc--ChHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 045953 61 IGRTFVLE--PKSVLMNEQEQRLKDSESAIAALQASKEYL 98 (129)
Q Consensus 61 VGrmFv~~--~k~~i~~eL~e~~~~~e~~i~~Lekq~~~L 98 (129)
+-|+|+.. |.+.+...|.+..+.+...+..++.-...+
T Consensus 8 LlKlff~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 47 (90)
T PF10400_consen 8 LLKLFFGGHLDPEEAIELLEERREQHEERLAEYEEIEQEI 47 (90)
T ss_dssp HHHHHGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566554 788899999999999888888888765443
No 326
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=25.30 E-value=24 Score=31.96 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCChhH
Q 045953 79 QRLKDSESAIAALQASK---EYLEKQKAEVESNLAELLQQDPGL 119 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~---~~Le~~l~e~e~~Lrell~~~~~~ 119 (129)
++...++..+.++.++. .++.+++++++..-..++...-.|
T Consensus 308 ~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~L 351 (713)
T PF05622_consen 308 DRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAML 351 (713)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555443 344555555555555555444333
No 327
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.29 E-value=6.8e+02 Score=24.82 Aligned_cols=52 Identities=12% Similarity=0.184 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh
Q 045953 9 AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT 64 (129)
Q Consensus 9 ~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm 64 (129)
.+......+...+..+......+..++.++....--.. .+. +.+.|+.....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~---~l~-~~~a~~~~~eL 335 (1353)
T TIGR02680 284 DLGRARDELETAREEERELDARTEALEREADALRTRLE---ALQ-GSPAYQDAEEL 335 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc-CCHHHHHHHHH
Confidence 33344444444444444444444555544444444444 442 45689887665
No 328
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=25.24 E-value=1.6e+02 Score=17.55 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLE 99 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le 99 (129)
+.+.+..-+..+.+.++.+|..|..-...|+
T Consensus 33 ~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 33 PCADRRALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667777777777777777776666554
No 329
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=25.15 E-value=2.9e+02 Score=20.57 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=33.2
Q ss_pred hhhhhhhhhhhccChH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953 56 NTYKSIGRTFVLEPKS-VLMNEQEQRLKDSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 56 ~vYk~VGrmFv~~~k~-~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e 104 (129)
--|-.+|++|.-.|.. .+-.+|+.........+..+++..+.+..++.+
T Consensus 27 ia~vn~~~i~~~~~~~k~~~~~le~~f~~~~~~lq~~~~el~~~~~kL~~ 76 (170)
T COG2825 27 IAIVNLGRIFQESPQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQD 76 (170)
T ss_pred eeeecHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567788999888877 666667766666666666666665555555554
No 330
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=25.06 E-value=2.8e+02 Score=20.27 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcCChh
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYL-------EKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~L-------e~~l~e~e~~Lrell~~~~~ 118 (129)
+.+=|+++.......+..-++...-. +..++++..+-.+++..-..
T Consensus 31 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~ 83 (161)
T COG0711 31 ILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKK 83 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554444 44444444444445444333
No 331
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.78 E-value=3e+02 Score=25.23 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=15.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
..+.+.++.++.++..|+...+.+.+.++.+++.+.
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 332
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=24.76 E-value=3e+02 Score=20.48 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGL 119 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~ 119 (129)
+.+..=|++|.+.....+..-++.+...+.-.++.+..|++.-....++
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666665555555555555554444444
No 333
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=24.73 E-value=3.3e+02 Score=20.98 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
...+.|..+++.++.+|..++.+....+.+|.
T Consensus 193 ~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~ 224 (239)
T PF07195_consen 193 SRIDSLNSQIKSLDKQIEDLEERLESKEERLR 224 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544444444333333
No 334
>PTZ00332 paraflagellar rod protein; Provisional
Probab=24.69 E-value=5e+02 Score=23.36 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 045953 21 TGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEK 100 (129)
Q Consensus 21 qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~ 100 (129)
.+-+.....-+...+.+++++.+-..+|..+| +.+-+.+--.. +...+-+-|..--...+..+..+++-.+-++-
T Consensus 129 ~~~~~~~~~~~E~~E~elr~~~~d~~~l~~v~--~~~~~~l~d~~---~~t~~Qnal~~~~~~i~~~~~~~~k~~ei~~~ 203 (589)
T PTZ00332 129 TQMIDNAIAKMEKVEEELRRSQLDATQLAQVP--TATLKNIEDIM---NVTQIQNALASTDDQIKTQLAQLEKTNEIQNV 203 (589)
T ss_pred ccchHHHHHHHHHHHHHHHHhhcCHHHHhhcc--HHHHHHHHhhc---cHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHH
Confidence 33445566677889999999999999999997 44544444332 44444444444444444444555555555554
Q ss_pred HHHH
Q 045953 101 QKAE 104 (129)
Q Consensus 101 ~l~e 104 (129)
.+.+
T Consensus 204 ai~~ 207 (589)
T PTZ00332 204 AMHD 207 (589)
T ss_pred Hhhc
Confidence 4443
No 335
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=24.66 E-value=3.8e+02 Score=21.66 Aligned_cols=52 Identities=10% Similarity=0.053 Sum_probs=28.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSM 126 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~~ 126 (129)
..|.++...+.++..++.+......+.++++...+.....+.-+-.+.|...
T Consensus 243 ~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (304)
T PF02646_consen 243 GKLYDRFGKFVEHLEKLGKSLDKAVKSYNKAVGSLEKRVGNIARRIEKLKEL 294 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 3444555555555555556666666666666666665555444444444433
No 336
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.64 E-value=3.6e+02 Score=21.37 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELR 49 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~ 49 (129)
.+|...+..||..+..++-++.....++.++...-+....-++.+.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999988888877777653
No 337
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=24.47 E-value=1.4e+02 Score=20.05 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHH--HHHHHHHHHhhHHHHHH
Q 045953 22 GKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSV--LMNEQEQRLKDSESAIA 89 (129)
Q Consensus 22 qql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~--i~~eL~e~~~~~e~~i~ 89 (129)
..+..+..++..+...+-...++..=|..||+ -|.++-..+-..+... -.+++..+....|.+++
T Consensus 48 ~~~~~i~~~L~~~g~~i~d~~~v~~iL~~Lp~---~y~~~~~~i~~~~~~~~~t~~el~~~L~~~E~~~~ 114 (119)
T PF14223_consen 48 SRLKEIVDELRAIGKPISDEDLVSKILRSLPP---SYDTFVTAIRNSKDLPKMTLEELISRLLAEEMRLK 114 (119)
T ss_pred HHHHHhhhhhhhcCCcccchhHHHHHHhcCCc---hhHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHH
Confidence 35666677777777788888888889999985 4666666655553333 45555555555555544
No 338
>PRK14622 hypothetical protein; Provisional
Probab=24.45 E-value=1.4e+02 Score=20.53 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045953 5 ANRAAFQEIKGRMIENTGKM 24 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql 24 (129)
++.|..+++|.++...|..|
T Consensus 5 ~lmkqaq~mQ~~m~~~q~el 24 (103)
T PRK14622 5 YLMRQAKKLEKAMADAKEKL 24 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443
No 339
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=24.41 E-value=94 Score=20.24 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lek 93 (129)
+...+.++++.++.++..|+.
T Consensus 58 ~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 58 VLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555543
No 340
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=24.34 E-value=1.9e+02 Score=18.19 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=19.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEK 100 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~ 100 (129)
++-|++++..++.++..|+..-.+|..
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777788887777776666543
No 341
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=24.21 E-value=6e+02 Score=23.81 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELR 49 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~ 49 (129)
|..+......+.-.+..+..++..+...+++++..+.+|.
T Consensus 598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq 637 (769)
T PF05911_consen 598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQ 637 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444455555555555555544444
No 342
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=24.19 E-value=3.3e+02 Score=20.89 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHH----
Q 045953 22 GKMKQVQNQMRNKEGEKKRAYL---TLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQAS---- 94 (129)
Q Consensus 22 qql~~v~~Q~~~~e~~~r~~~l---T~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq---- 94 (129)
.++..+..|+..++..+-.++. +..-+..+..+..+-+.+-+.|=..+++.+++++.+..+..++=-..|...
T Consensus 81 ~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~ 160 (191)
T PTZ00446 81 QEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNN 160 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3444555555555544444333 333444445566667777777777889999999998888887766666532
Q ss_pred --HHHHHHHHHHHHH
Q 045953 95 --KEYLEKQKAEVES 107 (129)
Q Consensus 95 --~~~Le~~l~e~e~ 107 (129)
..-|+..|..++.
T Consensus 161 ~DEdELe~ELe~Le~ 175 (191)
T PTZ00446 161 VDDDEIDKELDLLKE 175 (191)
T ss_pred CCHHHHHHHHHHHHH
Confidence 2445555554443
No 343
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=24.14 E-value=2.8e+02 Score=19.96 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=19.2
Q ss_pred hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 65 FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 65 Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
|+-.| +.+-+++|.+.....+..-++...-.+....+.+..|.
T Consensus 42 ~l~~P---i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~ 84 (156)
T CHL00118 42 ILYKP---LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELS 84 (156)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455 44444444444444444444444444444444443333
No 344
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=24.06 E-value=2.1e+02 Score=18.45 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESN 108 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~ 108 (129)
....+..|...+..+...+..++.........+.+....
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666655555555544433
No 345
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=23.77 E-value=90 Score=21.41 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=16.8
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIEN 20 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~ 20 (129)
++|.+|+++|.++-.++..-
T Consensus 43 I~d~eL~~~FeeIa~RFrk~ 62 (92)
T PF07820_consen 43 ISDAELQAAFEEIAARFRKG 62 (92)
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 47999999999998887643
No 346
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.72 E-value=3.3e+02 Score=21.98 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQ 50 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~ 50 (129)
.++...|..|+.++.+++. ++.+..|.++......+....++.++.
T Consensus 59 ~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~ 104 (262)
T COG1729 59 TQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLES 104 (262)
T ss_pred HHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 3566677777777777776 666666665555555566555555544
No 347
>PRK14623 hypothetical protein; Provisional
Probab=23.70 E-value=1.3e+02 Score=20.98 Aligned_cols=18 Identities=6% Similarity=0.128 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045953 6 NRAAFQEIKGRMIENTGK 23 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqq 23 (129)
+.|.++++|.++.+.|.+
T Consensus 6 ~mkqaqkmQ~km~~~Qee 23 (106)
T PRK14623 6 MMGKLKEAQQKVEATKKR 23 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 348
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=23.69 E-value=2.1e+02 Score=18.29 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH
Q 045953 88 IAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQ 122 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~ 122 (129)
.+.|..-......++-..=..+.++-....+++++
T Consensus 28 ~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 28 NKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333344443
No 349
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.55 E-value=4e+02 Score=21.56 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 14 KGRMIENTGKMKQVQNQMRNKEGEK 38 (129)
Q Consensus 14 q~k~~~~qqql~~v~~Q~~~~e~~~ 38 (129)
+.+...++.++.....++..++..+
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l 167 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQL 167 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444333
No 350
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=23.54 E-value=3e+02 Score=20.12 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcC
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYL-------EKQKAEVESNLAELLQQ 115 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~L-------e~~l~e~e~~Lrell~~ 115 (129)
+.+=|++|.+.....+...+...... +..+.+......+++..
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 90 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAE 90 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444444444 44444444444444433
No 351
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.51 E-value=2.4e+02 Score=18.97 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l 102 (129)
+.+..-+..+.+.++.++..|+.....|+..+
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 74 DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666666665555444
No 352
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=23.51 E-value=4.5e+02 Score=22.13 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCchhhhhh-----hhhhhccChHHHHHHHHHHHhhHH
Q 045953 17 MIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL------PDNTNTYKSI-----GRTFVLEPKSVLMNEQEQRLKDSE 85 (129)
Q Consensus 17 ~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l------~~dt~vYk~V-----GrmFv~~~k~~i~~eL~e~~~~~e 85 (129)
+.+.|+|+..+.-.+..++|++.++..+..-+..+ +++.+| .+| -|-|+..- +..|.++....|
T Consensus 61 vrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkv-MPVKqWLEERR~lQgE----mQ~LrDKLAiaE 135 (351)
T PF07058_consen 61 VRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKV-MPVKQWLEERRFLQGE----MQQLRDKLAIAE 135 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCcc-ccHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45678888888899999999999999998888776 222222 233 23344333 344555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 86 SAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 86 ~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
---+.=-.-++.|.-.|+-+++.|+-
T Consensus 136 RtAkaEaQLkeK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 136 RTAKAEAQLKEKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44443334456677777777777764
No 353
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.48 E-value=2e+02 Score=18.01 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=17.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEY 97 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~ 97 (129)
+++|++++..++.+|..++.....
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888877765443
No 354
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=23.46 E-value=20 Score=22.13 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=14.3
Q ss_pred CchhhhhhhhhhhccCh
Q 045953 54 NTNTYKSIGRTFVLEPK 70 (129)
Q Consensus 54 dt~vYk~VGrmFv~~~k 70 (129)
+.++|-+=|+|||..|-
T Consensus 10 g~~I~PG~G~~~Vr~Dg 26 (54)
T cd00472 10 GYKIYPGHGKMYVRNDG 26 (54)
T ss_pred CCeecCCCccEEEecCC
Confidence 56789999999998874
No 355
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=23.39 E-value=4.2e+02 Score=21.70 Aligned_cols=100 Identities=9% Similarity=0.145 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 045953 24 MKQVQNQMRNKEGEKKRAYLTLEELRQL-----PDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYL 98 (129)
Q Consensus 24 l~~v~~Q~~~~e~~~r~~~lT~~EL~~l-----~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~L 98 (129)
++.+...+..+..-...+.-.++|...+ ..|...=.-.|.-|-..|.+.+-..|..+...+..-+..-...-..+
T Consensus 71 ~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~sD~~v 150 (339)
T cd09235 71 IQTIDQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKERWTRTPSNKLTKPLRAEGSKYRTILDNAVQADKIV 150 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444444444444444444444443333 22333333345557889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 99 EKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 99 e~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
..++.+....|.-|-++...|...|
T Consensus 151 ~~k~~~~~~~l~lLs~~~~~l~~~l 175 (339)
T cd09235 151 REKYESHREGIELLSKPEEELANAI 175 (339)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhC
Confidence 9999999999987766656665444
No 356
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.12 E-value=2.6e+02 Score=19.28 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=32.9
Q ss_pred hccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 66 VLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 66 v~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
+..--......++++...+...++.+...-......++.+...+
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445666778888888888888888888888888887776554
No 357
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=23.09 E-value=1.7e+02 Score=17.17 Aligned_cols=31 Identities=10% Similarity=0.272 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNK 34 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~ 34 (129)
+|+++.+--+...+.++...|..+.-.|.++
T Consensus 7 eelkqll~rle~eirett~sl~ninksidq~ 37 (46)
T PF08181_consen 7 EELKQLLWRLENEIRETTDSLRNINKSIDQY 37 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555555555665555555555443
No 358
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=23.00 E-value=2.9e+02 Score=19.79 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=12.0
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHH
Q 045953 68 EPKSVLMNEQEQRLKDSESAIAALQ 92 (129)
Q Consensus 68 ~~k~~i~~eL~e~~~~~e~~i~~Le 92 (129)
...+++.++|++.+..-+.-|..++
T Consensus 96 k~y~~~~~~L~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 96 KKYKDLLNKLDKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444443
No 359
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=22.99 E-value=2.4e+02 Score=18.79 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.-+++|+...+-+=--+..+++-+.....++..+++.++.+
T Consensus 7 k~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 7 KRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999988855
No 360
>PRK14627 hypothetical protein; Provisional
Probab=22.95 E-value=1.6e+02 Score=20.13 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045953 5 ANRAAFQEIKGRMIENTGKM 24 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql 24 (129)
++.|..+++|.++...|..|
T Consensus 5 ~~mkqaq~mQ~km~~~Q~el 24 (100)
T PRK14627 5 QLMQMAQQMQRQMQKVQEEL 24 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544444433
No 361
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=22.92 E-value=6.3e+02 Score=23.65 Aligned_cols=120 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHhcCCCCCchhhh----
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEK--------------------KRAYLTLEELRQLPDNTNTYK---- 59 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~--------------------r~~~lT~~EL~~l~~dt~vYk---- 59 (129)
.-+++.+.++|..+...++.+......+..+.-.+ +..+.+...|..+-+....-.
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r 210 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAR 210 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred -hhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 60 -SIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 60 -~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
.+.+-|=..+-+....-+..-++.-+..|.+|++....++..+.-++.++--.-..+..+..+|
T Consensus 211 ~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~l 275 (775)
T PF10174_consen 211 EQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQL 275 (775)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH
No 362
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=22.83 E-value=3.9e+02 Score=21.13 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
+.-..++-.+...++..+..+......|++++.++.+.|.+.+....+
T Consensus 117 ~~~~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~ 164 (217)
T COG1777 117 PEGISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDG 164 (217)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334678888888999999999999999999999999999998877665
No 363
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=22.76 E-value=3.1e+02 Score=20.01 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESA 87 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~ 87 (129)
+-|-.+-.++..++..-..+...+..+++++..++--...+.. ++-..+.+=. ...+=+..+......++.+
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~---daEn~k~eie-----~L~~el~~lt~el~~L~~E 74 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLIL---DAENSKAEIE-----TLEEELEELTSELNQLELE 74 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888888888888888888766654444432 2223332211 1223334444455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 045953 88 IAALQASKEYLEKQKAEVESNLAELLQQDP 117 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lrell~~~~ 117 (129)
+.++.+.+..|.+.+.+.+..+.++=....
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 666666666666666666666555544433
No 364
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=22.64 E-value=3.1e+02 Score=19.96 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
+.+.+-|++|.+.....+..-++.+...+..+.+.+..|.+.-..
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~e 77 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQ 77 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777777666666666666654433
No 365
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.47 E-value=2.5e+02 Score=18.72 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=21.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
++|.++...+...++.++.+...++..+...
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777888888877777777654
No 366
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=22.42 E-value=1e+02 Score=22.91 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.5
Q ss_pred CCCchhhhhhhhh
Q 045953 52 PDNTNTYKSIGRT 64 (129)
Q Consensus 52 ~~dt~vYk~VGrm 64 (129)
..+.++|+++|=+
T Consensus 148 ~k~~Kmy~~LGvl 160 (170)
T TIGR02833 148 KKNEKMYRYLGVL 160 (170)
T ss_pred HhcccHHHHHHHH
Confidence 4578999999964
No 367
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.39 E-value=4.3e+02 Score=21.49 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEEL 48 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL 48 (129)
++|-+.+.|||. .-..+....+.-...++.+++++.-.+-+
T Consensus 126 eeLlkV~~ELqt----~mktYh~y~~e~~~ae~Klk~aE~q~ek~ 166 (263)
T cd07682 126 EDLMKVLNELYT----VMKTYHMYNADSISAQSKLKEAEKQEEKQ 166 (263)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888877 77888889999999999999988776554
No 368
>PRK11020 hypothetical protein; Provisional
Probab=22.37 E-value=1.7e+02 Score=20.95 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEY 97 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~ 97 (129)
.-.+++..+..+++.++.+|..|..+..|
T Consensus 28 gd~~~i~qf~~E~~~l~k~I~~lk~~~~~ 56 (118)
T PRK11020 28 GDAEKYAQFEKEKATLEAEIARLKEVQSQ 56 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999887665
No 369
>PLN02320 seryl-tRNA synthetase
Probab=22.36 E-value=5.5e+02 Score=22.73 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 87 AIAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 87 ~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
+.+.|..+...|+..+.+++..|.+++..=|+
T Consensus 138 ~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN 169 (502)
T PLN02320 138 EGKNLKEGLVTLEEDLVKLTDELQLEAQSIPN 169 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45555556666666677777777777655443
No 370
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=22.29 E-value=2.6e+02 Score=24.80 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=45.3
Q ss_pred chhhhhhhhhhhcc---------ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 55 TNTYKSIGRTFVLE---------PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 55 t~vYk~VGrmFv~~---------~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
.....--|..||.- ++++|+..|+.|+..-.+. -...-+....+=+.--|.+++...|.++.+|.+
T Consensus 111 ~~Y~~kFGf~fii~~~g~~~~~~~~~~il~~l~~Rl~n~~e~-----E~~~a~~e~~~I~~~Rl~~l~~~~~~~~~r~~~ 185 (591)
T PRK13799 111 ADYGKKFGFPFILAVKGARGAGLAKAEIIATFERRLHNHPDD-----ELGEALRNIGRIAEIRINDKFGYTPAIGADVMD 185 (591)
T ss_pred HHHHHhcCCeEEEEEcCcccCCCCHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44555679988765 7999999999999652211 112233333444455788999999999998865
No 371
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.27 E-value=3.7e+02 Score=22.01 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=36.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hhHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQD-PGLAQQIM 124 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~-~~~~~~~~ 124 (129)
.+-...++.+-.+|+...+.|++.-+.++..+|--+.+. ..||.+..
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVq 50 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQ 50 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHh
Confidence 345667888888888888888888888888888777554 48887653
No 372
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.19 E-value=1.1e+02 Score=23.82 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
...-.+++.+..-.++.+++.++..+++|..-+++.. .+.+++
T Consensus 123 ~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l 165 (262)
T PF14257_consen 123 RNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLL 165 (262)
T ss_pred eeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 3333455556666666666666666666666554333 444444
No 373
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=22.11 E-value=3.9e+02 Score=20.87 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 045953 2 SDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQL 51 (129)
Q Consensus 2 ~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l 51 (129)
|+..+.+++.|.+.-+.+.+.. .+..+....+.+++.++..+..+...
T Consensus 121 ~~~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v~~~ 168 (264)
T PF06008_consen 121 PSEDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRVQKW 168 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888877777776 38888888888888888877776654
No 374
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=22.02 E-value=3.2e+02 Score=19.93 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=33.2
Q ss_pred hhccChHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHH
Q 045953 65 FVLEPKSVLMNE----QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQ 122 (129)
Q Consensus 65 Fv~~~k~~i~~e----L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~ 122 (129)
|+..|...++++ +.+....++..-...+......+..+.+....-.+++..-..-|+.
T Consensus 39 fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~ 100 (174)
T PRK07352 39 FGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEA 100 (174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 3444445555555556666666777777777777777655544443
No 375
>COG4709 Predicted membrane protein [Function unknown]
Probab=21.98 E-value=3.8e+02 Score=20.83 Aligned_cols=61 Identities=23% Similarity=0.253 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCChhHHHHHHhccCC
Q 045953 69 PKSVLMNEQEQRLKDS--ESAIAALQASKEYLEKQKAEV--ESNLAELLQQDPGLAQQIMSMSVM 129 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~--e~~i~~Lekq~~~Le~~l~e~--e~~Lrell~~~~~~~~~~~~~~~~ 129 (129)
+|.+..++|+...+.+ +++.+.+.-=++|....-.+- |+++-.-++.+..+|.++-++..+
T Consensus 2 tk~efL~eL~~yL~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~ 66 (195)
T COG4709 2 TKTEFLNELEQYLEGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGI 66 (195)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4677888888877765 556667777677777666665 888888898889999999887653
No 376
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=21.95 E-value=2.4e+02 Score=18.35 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=19.6
Q ss_pred hhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953 57 TYKSIGRTFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 57 vYk~VGrmFv~~~k~~i~~eL~e~~~~~ 84 (129)
.|..||+.|=..|.+++..-++.-.+.+
T Consensus 46 s~~~Ig~~fg~r~hStV~~a~~ri~~~~ 73 (90)
T cd06571 46 SLPEIGRAFGGRDHSTVLHAVRKIEELL 73 (90)
T ss_pred CHHHHHHHhCCCCHhHHHHHHHHHHHHH
Confidence 5788999998778877776655443333
No 377
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=21.84 E-value=2e+02 Score=17.38 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=16.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTG 22 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qq 22 (129)
||+.||...+.++...+..+.-
T Consensus 6 ls~~eL~~~l~~l~~elf~Lr~ 27 (57)
T cd00427 6 KSDEELQEKLDELKKELFNLRF 27 (57)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888777777653
No 378
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=21.71 E-value=3.7e+02 Score=24.16 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=47.7
Q ss_pred hhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 59 KSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 59 k~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
.++++.|=..=+..|.+=|++.+...=..|..|+.-.+.+.+++.+.+.+|...-..
T Consensus 350 ~~~~~~~r~~v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 350 EPVQQAFRDSVSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555556788888999999999999999999999999999999999887654
No 379
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=21.64 E-value=1.3e+02 Score=21.99 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 87 AIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 87 ~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
-+..|+.+.+.....|+..-++|+.+.+..|.=.+-+
T Consensus 4 av~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp~ 40 (134)
T PF04697_consen 4 AVRTLQAQLEKAKESLKNVDENIKKLTGRDPSENRPG 40 (134)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCcc
Confidence 3567888888888999999999999998877544333
No 380
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=21.61 E-value=1.1e+02 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=10.5
Q ss_pred CCCchhhhhhhhh
Q 045953 52 PDNTNTYKSIGRT 64 (129)
Q Consensus 52 ~~dt~vYk~VGrm 64 (129)
..+.++|+++|=+
T Consensus 149 ~k~~Kmy~~LGvl 161 (171)
T PRK08307 149 KKNEKMYKYLGFL 161 (171)
T ss_pred HhCCcHHHHHHHH
Confidence 4578999999964
No 381
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.54 E-value=2.5e+02 Score=18.41 Aligned_cols=8 Identities=13% Similarity=0.401 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 045953 103 AEVESNLA 110 (129)
Q Consensus 103 ~e~e~~Lr 110 (129)
...+.+||
T Consensus 39 ~k~q~qlr 46 (72)
T COG2900 39 DKLQAQLR 46 (72)
T ss_pred HHHHHHHH
Confidence 33333333
No 382
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.44 E-value=4.2e+02 Score=23.40 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=24.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
.+++.+...+..+-+.|.+..+.|.++-...-.+|+..+..
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 45556666666666666666666666555555555555543
No 383
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=21.34 E-value=3.8e+02 Score=20.44 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=18.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
.++.+...++..+..|+-.-+-|+..+..++..-.++.
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555545544444444444443
No 384
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.30 E-value=3.9e+02 Score=20.91 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=34.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 045953 81 LKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSM 126 (129)
Q Consensus 81 ~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~~ 126 (129)
-+..+.+...+++.-..|.+..+.--+.++.|.....+++..|-+.
T Consensus 13 fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~ 58 (225)
T cd07590 13 LEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASG 58 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3456667777777777788888888888888888888888777653
No 385
>PRK08724 fliD flagellar capping protein; Validated
Probab=21.30 E-value=2.6e+02 Score=25.71 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=22.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
..+.+.++..++.+.++...|+.+++..+..++
T Consensus 616 ~~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~ 648 (673)
T PRK08724 616 RTREKSLREQNYRLNDDQVALDRRMESLEKRTH 648 (673)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777666665
No 386
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.29 E-value=3.7e+02 Score=21.74 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKR 40 (129)
Q Consensus 3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~ 40 (129)
+++|.+-+.+++..+...|..+..+......++-.++.
T Consensus 151 keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 151 KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 387
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=21.27 E-value=4.2e+02 Score=20.94 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
.+...+.-+.+.+..++..|++....|..+++
T Consensus 11 ~ln~~~~~e~~~Lk~kir~le~~l~~Lk~~l~ 42 (236)
T PF12017_consen 11 ILNRTLKIENKKLKKKIRRLEKELKKLKQKLE 42 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666667777777777777777776664
No 388
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.08 E-value=3e+02 Score=19.17 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEK 38 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~ 38 (129)
..|+|++.+-|++...+..+|..-++.+..++.+.
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~ 49 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQEN 49 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999988888888877776666555443
No 389
>PRK14626 hypothetical protein; Provisional
Probab=21.03 E-value=1.5e+02 Score=20.68 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 045953 13 IKGRMIENTGKM 24 (129)
Q Consensus 13 lq~k~~~~qqql 24 (129)
+-.+++..|+++
T Consensus 10 mmkqaq~mQ~km 21 (110)
T PRK14626 10 LMKQMQSIKENV 21 (110)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 390
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.03 E-value=6.6e+02 Score=23.11 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=26.3
Q ss_pred HHhcCCCCCchhhhhhhhhhhccC--hHHHHHHHHHHHhhHHHHHHHH
Q 045953 46 EELRQLPDNTNTYKSIGRTFVLEP--KSVLMNEQEQRLKDSESAIAAL 91 (129)
Q Consensus 46 ~EL~~l~~dt~vYk~VGrmFv~~~--k~~i~~eL~e~~~~~e~~i~~L 91 (129)
.||..|.+|+.+|-|.--||-..- .-+-++++.....-++++.++|
T Consensus 662 nELk~Lkedaatfsslramf~~R~ee~~tq~de~~~ql~aaedekKtl 709 (772)
T KOG0999|consen 662 NELKALKEDAATFSSLRAMFAARCEEYVTQLDELQRQLAAAEDEKKTL 709 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 467777788888888888875422 2222344444444444444444
No 391
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.01 E-value=8e+02 Score=24.11 Aligned_cols=93 Identities=13% Similarity=0.221 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHH
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSES 86 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~ 86 (129)
+..|.+||..+......+..++++|.++...++.++.-..-.. .+. ..|.........
T Consensus 677 ~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~------------------~~~----~~l~~e~~~~k~ 734 (1200)
T KOG0964|consen 677 RSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFK------------------REH----EKLKRELNTIKG 734 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------------------HHH----HHHHHHHHHhhh
Confidence 4567777777777777777777777777777776655432211 111 223333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Q 045953 87 AIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQ 121 (129)
Q Consensus 87 ~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~ 121 (129)
..-.+++...+..+.|..+..++..+..+...+-.
T Consensus 735 e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~ 769 (1200)
T KOG0964|consen 735 EKSRVQESLEPKGKELEEIKTSLHKLESQSNYFES 769 (1200)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555555555555555555555555544443333
No 392
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=21.00 E-value=3.4e+02 Score=19.75 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~ 84 (129)
+|--+|.|+...+............-...+...+..+.=+.+|+..+... .-.|+.+..++|.+-.+..
T Consensus 10 alG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~e-----------ld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 10 ALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVE-----------LDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhh-----------cCCchhHHHHHHHHHHHHH
Confidence 35568899999999999999889888889999988888888888887422 2224457778888888888
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHcC
Q 045953 85 ESAIAALQA-------SKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 85 e~~i~~Lek-------q~~~Le~~l~e~e~~Lrell~~ 115 (129)
.+=+.+..+ +.-++.+++++.+..|+..++-
T Consensus 79 ~~LV~k~sk~~r~n~~kk~~y~~Ki~~le~~l~~f~~v 116 (147)
T PF05659_consen 79 KELVEKCSKVRRWNLYKKPRYARKIEELEESLRRFIQV 116 (147)
T ss_pred HHHHHHhccccHHHHHhhHhHHHHHHHHHHHHHHHhcc
Confidence 777776665 2445788999999999988753
No 393
>PRK00153 hypothetical protein; Validated
Probab=20.97 E-value=1.5e+02 Score=20.02 Aligned_cols=14 Identities=7% Similarity=-0.042 Sum_probs=5.5
Q ss_pred ChHHHHHHHHHHHh
Q 045953 69 PKSVLMNEQEQRLK 82 (129)
Q Consensus 69 ~k~~i~~eL~e~~~ 82 (129)
|.+.+-+-+..-..
T Consensus 64 d~e~LedlI~~A~n 77 (104)
T PRK00153 64 DVEMLEDLILAAFN 77 (104)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444443333333
No 394
>PRK12765 flagellar capping protein; Provisional
Probab=20.90 E-value=2.2e+02 Score=25.49 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=26.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
|..+.+.++.+++.|.++.++++++++..+..++.-
T Consensus 530 l~~~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~q 565 (595)
T PRK12765 530 LTKYDESLTNEIKSLTTSKESTQELIDTKYETMANK 565 (595)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888777777643
No 395
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=20.84 E-value=1.6e+02 Score=23.09 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQN 29 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~ 29 (129)
.++...+++..+....|-.|+.+.+
T Consensus 24 ~iravV~~ie~~~r~iq~~L~~vhq 48 (226)
T KOG3067|consen 24 KIRAVVDEIEEKLREIQLLLQNVHQ 48 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555555555555555555555554
No 396
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=20.68 E-value=74 Score=15.99 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=8.9
Q ss_pred CCcHHHHHHHH
Q 045953 1 MSDEANRAAFQ 11 (129)
Q Consensus 1 m~d~el~k~~~ 11 (129)
|||++.+|.|.
T Consensus 10 ~SNddFrkmfl 20 (21)
T PF05391_consen 10 KSNDDFRKMFL 20 (21)
T ss_pred cchHHHHHHHc
Confidence 68889998873
No 397
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.68 E-value=2.4e+02 Score=18.60 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=12.7
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lek 93 (129)
+.+|.+....++.+|.+|+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ 21 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEA 21 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45666666667766666653
No 398
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=20.56 E-value=5.2e+02 Score=21.83 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQD 116 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~ 116 (129)
.+...++......++.++..+..+.+.+.+++...++.+..+-..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVP 66 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
No 399
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=20.56 E-value=2.5e+02 Score=18.07 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQVQ----NQMRNKEGEKKRAYLTLEEL 48 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~v~----~Q~~~~e~~~r~~~lT~~EL 48 (129)
||++||.+-+.++-..+..+.-|...-. ..+..+.+++-++.-.+.|-
T Consensus 11 ~s~eeL~~~l~eLK~ELf~LR~q~a~g~l~n~~~ir~vRr~IARi~Tv~~E~ 62 (69)
T COG0255 11 KSVEELEEELRELKKELFNLRFQLATGQLENPHRIREVRRDIARILTVLREK 62 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888877776665432 24455555555555554443
No 400
>PRK14621 hypothetical protein; Provisional
Probab=20.54 E-value=1.6e+02 Score=20.60 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 045953 11 QEIKGRMIENTGKMK 25 (129)
Q Consensus 11 ~Elq~k~~~~qqql~ 25 (129)
.++-.+++..|+++.
T Consensus 7 ~~mmkqaq~mQ~km~ 21 (111)
T PRK14621 7 GDMMKQIQQAGEKMQ 21 (111)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444433
No 401
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.53 E-value=2e+02 Score=16.94 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHH
Q 045953 35 EGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIA 89 (129)
Q Consensus 35 e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~ 89 (129)
+..+......+.+|...++ .===+||-|=...+..++.++..+++.+...++
T Consensus 3 ~~~~~~~~k~i~~l~~~~~---~CPlC~r~l~~e~~~~li~~~~~~i~~~~~~lk 54 (54)
T PF04423_consen 3 KSEIEELKKYIEELKEAKG---CCPLCGRPLDEEHRQELIKKYKSEIEELPEKLK 54 (54)
T ss_dssp HHHHHHHHHHHHHHTT-SE---E-TTT--EE-HHHHHHHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHhcCCC---cCCCCCCCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence 4455566666777777543 333488888888899999999999888877664
No 402
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=20.47 E-value=3.1e+02 Score=24.30 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=44.4
Q ss_pred chhhhhhhhhhhc---------cChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 55 TNTYKSIGRTFVL---------EPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 55 t~vYk~VGrmFv~---------~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
.....--|.-||. .++++|+..|+.|+..-.+. -...-+..-.+=+.--|.+++...|.++.+|.+
T Consensus 111 ~~Y~~kFGf~fvi~v~~~~a~g~~~~~il~~~~~Rl~n~~~~-----E~~~a~~e~~~I~~~Rl~~~~~~~~~~~~r~~~ 185 (591)
T PRK13590 111 ADYNARFGFPFILAVRGPRGLGLSRQEIIATFARRLDNHPDF-----ELAEALRNIHRIAEIRLNDKFGAEPVLGNDVWD 185 (591)
T ss_pred HHHHHhCCCeEEEEEcCccccCCCHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 4455568999988 68999999999999872111 111223333333444678899999988888765
No 403
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.44 E-value=4.3e+02 Score=20.78 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 045953 95 KEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 95 ~~~Le~~l~e~e~~Lrell~~ 115 (129)
....+.++.+....-.+++..
T Consensus 59 ~~e~e~~l~~a~~ea~~ii~~ 79 (250)
T PRK14474 59 AERYRQKQQSLEQQRASFMAQ 79 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 404
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=20.34 E-value=5.6e+02 Score=22.01 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCchhhhhhhhhhhccChHHHHHHHHHHHhh
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP----DNTNTYKSIGRTFVLEPKSVLMNEQEQRLKD 83 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~----~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~ 83 (129)
+.++++-.+++....++..+-..+...+.++.+-..+++.|-.-. ..-..|-.+|.+-...=...+..++..+-..
T Consensus 130 ~siqe~~~kYQt~~~~id~I~~~l~k~kd~L~~dn~~Le~l~~~n~~~~~~L~~yI~agel~~eel~~~i~~~~~~ka~~ 209 (386)
T COG3853 130 SSIQEIFSKYQTIGAQIDRIIESLSKGKDELTRDNKMLELLYEKNREYFEHLEKYIAAGELKDEELETEIIPELKTKAES 209 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCc
Confidence 556778888888999999999999999999999888888876431 1223556677776665555666666666555
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 84 SE----SAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 84 ~e----~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
.. ..+..+..=...|+++.-++...+.=.+++
T Consensus 210 ~~q~~v~~v~~~~~~~~~L~qRv~Dl~~a~~Va~Q~ 245 (386)
T COG3853 210 GNQMDVQQVNELTLFINRLEQRVYDLLLARMVALQT 245 (386)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 123333444455667776666655444443
No 405
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.33 E-value=5.4e+02 Score=21.84 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.+..+....+......|....+.|...+.+++..++..
T Consensus 371 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 371 PEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555566666666666666666666666666554
No 406
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.30 E-value=3.4e+02 Score=19.52 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=12.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
|++.++..+.....-......|+++.+..+..+++
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 407
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.24 E-value=6.9e+02 Score=23.03 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAY 42 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~ 42 (129)
+..+..+..++.+-+.+-..++.|+....+..+..+
T Consensus 487 Kq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee 522 (697)
T PF09726_consen 487 KQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEE 522 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555555555555555555555555555544433
No 408
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=20.14 E-value=3.9e+02 Score=20.17 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=7.2
Q ss_pred hhhhhhhhhhhcc
Q 045953 56 NTYKSIGRTFVLE 68 (129)
Q Consensus 56 ~vYk~VGrmFv~~ 68 (129)
.+|+..-+.|=..
T Consensus 87 ~~~k~~~~ifkeg 99 (163)
T PF03233_consen 87 SFFKDLSKIFKEG 99 (163)
T ss_pred HHHHHHHHHHHhc
Confidence 4666666665433
No 409
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=20.13 E-value=1.2e+02 Score=22.38 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=10.5
Q ss_pred CCCchhhhhhhhh
Q 045953 52 PDNTNTYKSIGRT 64 (129)
Q Consensus 52 ~~dt~vYk~VGrm 64 (129)
+...++|+++|=+
T Consensus 148 ~~~~Klyr~LGvl 160 (170)
T PF09548_consen 148 KKKGKLYRSLGVL 160 (170)
T ss_pred HhcccHHHHHHHH
Confidence 5678999999964
No 410
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=20.03 E-value=5e+02 Score=21.34 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=51.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT 64 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm 64 (129)
|+-+||++.-..|+.+++++-.+|....+.+..+-.++.-=-.|++.|-+.-.--| |=-|||.
T Consensus 219 Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEKDsLaSElhVRHVaIEQLlKn~sklP-~Lq~~r~ 281 (285)
T PF06937_consen 219 MTLDELKQLNEKLLQQIQDVFEELTQQVQEKDSLASELHVRHVAIEQLLKNCSKLP-CLQVGRA 281 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-hhhhccc
Confidence 77889999999999999999999999999999999999888888888865432222 5556665
No 411
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=20.01 E-value=3.4e+02 Score=20.96 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=30.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 81 LKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 81 ~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
-+.++.+...+++.-+.|.+.++.--..++.|+....++++-|
T Consensus 14 Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l 56 (211)
T cd07588 14 FDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETL 56 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777777778888887777777665
Done!