Query 045953
Match_columns 129
No_of_seqs 106 out of 309
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 12:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zqm_A Prefoldin beta subunit 99.9 1.2E-22 4.2E-27 141.6 11.9 114 5-118 3-116 (117)
2 1fxk_A Prefoldin; archaeal pro 99.9 3.3E-21 1.1E-25 132.5 11.0 105 10-114 3-107 (107)
3 2zdi_C Prefoldin subunit alpha 99.0 2.1E-09 7.1E-14 78.0 8.7 109 7-115 8-141 (151)
4 1fxk_C Protein (prefoldin); ar 98.9 1E-08 3.5E-13 72.5 10.8 106 10-115 3-131 (133)
5 3aei_A Prefoldin beta subunit 95.9 0.15 5E-06 33.5 9.9 88 17-104 6-93 (99)
6 1l8d_A DNA double-strand break 95.8 0.22 7.7E-06 33.2 11.9 103 8-113 3-105 (112)
7 2zqm_A Prefoldin beta subunit 95.6 0.064 2.2E-06 36.0 7.6 101 3-105 8-110 (117)
8 1fxk_A Prefoldin; archaeal pro 95.0 0.13 4.4E-06 34.0 7.5 98 5-104 5-104 (107)
9 2pnv_A Small conductance calci 93.9 0.18 6.2E-06 29.1 5.4 35 69-103 6-40 (43)
10 3mq9_A Bone marrow stromal ant 93.4 2.1 7.1E-05 34.7 13.0 41 72-112 429-469 (471)
11 2oqq_A Transcription factor HY 86.0 2.3 7.9E-05 24.2 5.0 27 73-99 11-37 (42)
12 3na7_A HP0958; flagellar bioge 85.4 10 0.00035 28.7 11.9 10 54-63 88-97 (256)
13 2dfs_A Myosin-5A; myosin-V, in 85.0 6.2 0.00021 36.2 10.2 35 75-109 987-1021(1080)
14 3ghg_A Fibrinogen alpha chain; 84.1 8.8 0.0003 32.9 10.0 42 71-112 109-150 (562)
15 2dfs_A Myosin-5A; myosin-V, in 82.6 22 0.00074 32.7 12.6 35 73-107 1017-1051(1080)
16 1i84_S Smooth muscle myosin he 82.5 18 0.0006 33.3 12.1 36 7-42 863-898 (1184)
17 3vkg_A Dynein heavy chain, cyt 82.4 27 0.00093 35.9 14.0 56 68-123 2010-2065(3245)
18 2yko_A LINE-1 ORF1P; RNA-bindi 81.2 4.5 0.00015 31.0 6.6 40 74-113 8-47 (233)
19 2l5g_B Putative uncharacterize 79.0 4.2 0.00014 23.2 4.3 33 75-107 5-37 (42)
20 3na7_A HP0958; flagellar bioge 78.1 20 0.00067 27.0 15.3 45 6-50 30-74 (256)
21 3swy_A Cyclic nucleotide-gated 77.4 8.3 0.00028 22.3 6.4 38 76-113 2-39 (46)
22 3efg_A Protein SLYX homolog; x 73.0 6.9 0.00023 24.9 4.7 43 73-115 15-57 (78)
23 1nkp_B MAX protein, MYC proto- 71.8 16 0.00053 22.9 6.9 61 41-102 17-77 (83)
24 1l8d_A DNA double-strand break 71.2 18 0.00063 23.5 10.1 96 5-103 7-102 (112)
25 3swf_A CGMP-gated cation chann 70.9 13 0.00045 23.5 5.6 39 75-113 3-41 (74)
26 2w83_C C-JUN-amino-terminal ki 69.5 7.1 0.00024 25.0 4.1 38 74-111 39-76 (77)
27 2aze_B Transcription factor E2 69.0 9.5 0.00032 25.6 5.0 38 77-114 4-41 (106)
28 3oja_A Leucine-rich immune mol 68.8 44 0.0015 26.9 14.4 49 76-124 439-487 (487)
29 1i84_S Smooth muscle myosin he 68.6 32 0.0011 31.6 9.8 26 13-38 862-887 (1184)
30 3tnu_B Keratin, type II cytosk 65.6 25 0.00085 23.9 6.7 37 74-110 38-74 (129)
31 3oja_B Anopheles plasmodium-re 65.5 55 0.0019 26.8 13.4 13 53-65 499-511 (597)
32 3u1c_A Tropomyosin alpha-1 cha 65.5 26 0.00088 23.0 6.6 31 80-110 38-68 (101)
33 1nlw_A MAD protein, MAX dimeri 64.6 21 0.00071 22.5 5.7 41 63-103 38-78 (80)
34 1gd2_E Transcription factor PA 63.2 20 0.0007 22.3 5.3 48 63-111 21-68 (70)
35 3he5_A Synzip1; heterodimeric 63.1 18 0.00063 20.5 5.5 38 72-109 3-47 (49)
36 2oqq_A Transcription factor HY 60.5 21 0.00071 20.2 5.0 30 72-101 3-32 (42)
37 3hnw_A Uncharacterized protein 59.3 42 0.0014 23.3 7.2 37 75-111 92-128 (138)
38 4abm_A Charged multivesicular 58.2 32 0.0011 21.7 7.5 45 79-123 6-50 (79)
39 3u0c_A Invasin IPAB, 62 kDa an 58.2 53 0.0018 24.2 10.5 55 10-64 102-156 (201)
40 2jee_A YIIU; FTSZ, septum, coi 57.7 35 0.0012 21.9 6.7 16 98-113 60-75 (81)
41 3tnu_A Keratin, type I cytoske 57.4 28 0.00095 23.7 5.8 37 74-110 40-76 (131)
42 1nkp_A C-MYC, MYC proto-oncoge 56.3 36 0.0012 21.7 7.4 64 42-105 22-85 (88)
43 3lss_A Seryl-tRNA synthetase; 56.0 89 0.003 26.1 10.2 31 88-118 113-143 (484)
44 1t2k_D Cyclic-AMP-dependent tr 55.3 30 0.001 20.4 6.6 36 71-106 21-56 (61)
45 4e61_A Protein BIM1; EB1-like 54.7 32 0.0011 23.2 5.5 46 3-48 6-58 (106)
46 3p8c_E Probable protein brick1 54.3 20 0.00069 22.7 4.2 27 76-102 42-68 (75)
47 1gmj_A ATPase inhibitor; coile 54.0 42 0.0014 21.7 6.2 28 79-106 51-78 (84)
48 3gp4_A Transcriptional regulat 53.8 47 0.0016 22.8 6.5 43 69-111 78-120 (142)
49 3cvf_A Homer-3, homer protein 53.1 21 0.00072 22.8 4.2 27 79-105 13-39 (79)
50 3pp5_A BRK1, protein brick1; t 52.6 24 0.00083 22.2 4.4 28 76-103 42-69 (73)
51 1nkp_B MAX protein, MYC proto- 50.3 43 0.0015 20.8 6.1 45 67-111 35-79 (83)
52 1c1g_A Tropomyosin; contractIl 50.3 62 0.0021 22.6 14.9 33 76-108 80-112 (284)
53 3etw_A Adhesin A; antiparallel 50.1 59 0.002 22.3 11.6 37 64-100 67-103 (119)
54 3o0z_A RHO-associated protein 49.5 72 0.0025 23.1 12.6 42 5-46 38-79 (168)
55 2oxj_A Hybrid alpha/beta pepti 49.3 30 0.001 18.6 4.5 32 80-115 2-33 (34)
56 2fxo_A Myosin heavy chain, car 49.2 59 0.002 22.0 13.6 44 69-112 80-123 (129)
57 4doh_A Interleukin-20; IL10 fa 49.0 19 0.00064 25.6 3.8 63 2-64 78-142 (153)
58 3rrk_A V-type ATPase 116 kDa s 49.0 90 0.0031 24.1 10.1 72 30-112 61-135 (357)
59 1jnm_A Proto-oncogene C-JUN; B 48.7 40 0.0014 19.9 4.9 29 81-109 24-52 (62)
60 1kd8_A GABH AIV, GCN4 acid bas 48.4 32 0.0011 18.8 4.8 31 75-105 4-34 (36)
61 2yko_A LINE-1 ORF1P; RNA-bindi 48.4 43 0.0015 25.6 5.9 41 70-110 11-51 (233)
62 2yy0_A C-MYC-binding protein; 48.0 20 0.00067 21.1 3.2 29 4-32 22-50 (53)
63 1fxk_C Protein (prefoldin); ar 47.6 60 0.002 21.6 10.7 98 17-114 3-123 (133)
64 4aj5_K Spindle and kinetochore 47.6 67 0.0023 22.2 6.4 50 77-126 48-97 (123)
65 1go4_E MAD1 (mitotic arrest de 47.5 59 0.002 21.6 7.0 74 20-98 17-94 (100)
66 2xdj_A Uncharacterized protein 47.2 53 0.0018 20.9 7.7 39 8-46 20-58 (83)
67 3hnw_A Uncharacterized protein 47.1 69 0.0023 22.2 6.9 16 6-21 30-45 (138)
68 2zdi_C Prefoldin subunit alpha 46.5 31 0.001 23.9 4.6 101 12-115 6-134 (151)
69 3l4q_C Phosphatidylinositol 3- 45.8 83 0.0028 22.8 9.9 107 2-111 11-128 (170)
70 1jnm_A Proto-oncogene C-JUN; B 45.5 37 0.0013 20.1 4.3 38 70-107 20-57 (62)
71 4etp_A Kinesin-like protein KA 45.1 60 0.0021 26.2 6.8 49 75-123 6-54 (403)
72 1urf_A Protein kinase C-like 1 44.4 60 0.0021 20.8 5.3 28 7-34 42-69 (81)
73 1m1j_C Fibrinogen gamma chain; 44.2 1.3E+02 0.0045 24.6 9.7 43 6-48 25-67 (409)
74 3he4_A Synzip6; heterodimeric 43.7 46 0.0016 19.3 5.3 32 70-101 22-53 (56)
75 3vkg_A Dynein heavy chain, cyt 42.7 3.1E+02 0.011 28.5 13.4 91 6-114 2012-2105(3245)
76 1t2k_D Cyclic-AMP-dependent tr 42.3 51 0.0017 19.3 5.9 35 78-112 21-55 (61)
77 2yny_A General control protein 41.9 41 0.0014 22.6 4.4 36 69-104 66-101 (106)
78 3gpv_A Transcriptional regulat 41.0 55 0.0019 22.5 5.2 43 69-111 92-134 (148)
79 2l5g_B Putative uncharacterize 40.9 48 0.0017 18.7 4.5 27 75-101 12-38 (42)
80 4a17_U RPL35, 60S ribosomal pr 40.6 87 0.003 21.5 6.9 47 1-47 13-64 (124)
81 3jyw_S 60S ribosomal protein L 40.4 3.8 0.00013 23.6 -0.8 17 54-70 3-19 (45)
82 1lwu_C Fibrinogen gamma chain; 40.0 80 0.0027 25.0 6.6 36 78-113 18-53 (323)
83 2pnv_A Small conductance calci 39.7 51 0.0017 18.6 5.0 29 82-110 12-40 (43)
84 2jee_A YIIU; FTSZ, septum, coi 39.2 74 0.0025 20.3 7.0 33 72-104 6-45 (81)
85 3j21_W 50S ribosomal protein L 38.8 68 0.0023 19.8 6.2 43 1-43 9-56 (72)
86 1lrz_A FEMA, factor essential 38.7 95 0.0032 24.7 7.0 25 68-92 243-267 (426)
87 2wuj_A Septum site-determining 38.0 46 0.0016 19.5 3.8 38 64-101 19-56 (57)
88 1q08_A Zn(II)-responsive regul 37.9 72 0.0025 19.8 5.8 37 69-105 36-72 (99)
89 2lw1_A ABC transporter ATP-bin 36.8 63 0.0022 20.4 4.6 25 79-103 22-46 (89)
90 3fpp_A Macrolide-specific effl 36.8 1.3E+02 0.0046 22.6 8.3 40 2-41 63-102 (341)
91 1r8d_A Transcription activator 36.4 67 0.0023 20.6 4.8 29 73-101 76-104 (109)
92 3cve_A Homer protein homolog 1 36.1 79 0.0027 19.7 5.6 29 78-106 6-34 (72)
93 1ic2_A Tropomyosin alpha chain 36.0 78 0.0027 19.6 12.1 34 78-111 40-73 (81)
94 1t3j_A Mitofusin 1; coiled coi 35.8 93 0.0032 20.5 6.6 25 69-93 44-68 (96)
95 3viq_B Mating-type switching p 35.4 43 0.0015 21.7 3.6 26 82-107 4-29 (85)
96 2w6a_A ARF GTPase-activating p 35.4 75 0.0026 19.3 4.7 44 76-119 17-60 (63)
97 1m1j_C Fibrinogen gamma chain; 35.4 1.8E+02 0.0062 23.7 14.7 27 87-113 106-132 (409)
98 1a93_B MAX protein, coiled coi 35.0 55 0.0019 17.6 4.1 27 78-104 6-32 (34)
99 1dh3_A Transcription factor CR 34.9 37 0.0013 19.8 3.0 24 72-95 22-45 (55)
100 1go4_E MAD1 (mitotic arrest de 34.7 99 0.0034 20.5 5.4 30 80-109 13-42 (100)
101 3u06_A Protein claret segregat 34.6 1.2E+02 0.004 24.7 6.9 50 75-124 6-55 (412)
102 1lwu_C Fibrinogen gamma chain; 34.6 1.1E+02 0.0039 24.1 6.7 35 78-112 11-45 (323)
103 2wt7_A Proto-oncogene protein 34.0 75 0.0026 18.8 7.0 34 72-105 23-56 (63)
104 3cvf_A Homer-3, homer protein 33.8 77 0.0026 20.1 4.6 30 82-111 9-38 (79)
105 3efg_A Protein SLYX homolog; x 33.5 89 0.003 19.5 6.9 49 76-124 11-59 (78)
106 3twe_A Alpha4H; unknown functi 32.9 50 0.0017 16.5 3.8 23 3-25 3-25 (27)
107 3swy_A Cyclic nucleotide-gated 32.3 73 0.0025 18.2 4.1 21 84-104 3-23 (46)
108 1deq_A Fibrinogen (alpha chain 31.4 2.1E+02 0.0073 23.3 12.4 22 6-27 65-86 (390)
109 4gkw_A Spindle assembly abnorm 31.3 1.4E+02 0.0047 21.1 6.0 52 57-110 33-84 (167)
110 1m1j_B Fibrinogen beta chain; 30.6 2.3E+02 0.008 23.5 12.4 23 88-110 170-192 (464)
111 1zxa_A CGMP-dependent protein 30.5 97 0.0033 19.0 5.1 40 70-109 9-48 (67)
112 2dgc_A Protein (GCN4); basic d 30.4 90 0.0031 18.6 4.4 26 80-105 31-56 (63)
113 1joc_A EEA1, early endosomal a 29.3 1.3E+02 0.0044 20.1 6.0 41 76-116 8-48 (125)
114 1n1f_A Interleukin-19; cytokin 29.3 59 0.002 23.2 3.8 62 3-64 79-142 (159)
115 4dzo_A Mitotic spindle assembl 29.0 1.4E+02 0.0046 20.3 5.9 34 80-113 5-38 (123)
116 2v71_A Nuclear distribution pr 29.0 1.7E+02 0.0058 21.4 6.8 98 9-113 18-115 (189)
117 1hjb_A Ccaat/enhancer binding 28.8 1.2E+02 0.004 19.5 6.7 50 9-63 37-86 (87)
118 1wle_A Seryl-tRNA synthetase; 27.9 2.6E+02 0.009 23.2 8.7 35 84-118 121-155 (501)
119 3iv1_A Tumor susceptibility ge 27.9 1.2E+02 0.004 19.2 6.4 55 31-100 20-74 (78)
120 1kd8_B GABH BLL, GCN4 acid bas 27.8 79 0.0027 17.2 5.4 20 83-102 5-24 (36)
121 1avy_A Fibritin, gpwac M; bact 27.8 1.1E+02 0.0039 19.1 5.1 50 12-69 12-61 (74)
122 3a7p_A Autophagy protein 16; c 27.4 1.7E+02 0.0057 20.8 6.8 27 99-125 109-135 (152)
123 2v71_A Nuclear distribution pr 27.3 1.8E+02 0.0063 21.2 12.6 42 72-113 102-143 (189)
124 1ik9_A DNA repair protein XRCC 27.3 1.9E+02 0.0064 21.4 7.3 51 74-124 127-177 (213)
125 1dip_A Delta-sleep-inducing pe 27.1 83 0.0028 19.9 3.8 27 74-100 17-43 (78)
126 2vz4_A Tipal, HTH-type transcr 27.1 74 0.0025 20.4 3.8 28 74-101 76-103 (108)
127 2zkr_v 60S ribosomal protein L 26.9 1.5E+02 0.0052 20.2 6.4 60 1-61 12-76 (123)
128 3j21_V 50S ribosomal protein L 26.6 8.9 0.00031 23.8 -0.9 17 54-70 11-27 (66)
129 3swf_A CGMP-gated cation chann 26.6 71 0.0024 20.1 3.4 42 70-111 5-50 (74)
130 4emc_A Monopolin complex subun 26.3 1.6E+02 0.0054 21.7 5.8 28 80-107 35-62 (190)
131 3ghg_A Fibrinogen alpha chain; 26.1 2.3E+02 0.008 24.2 7.4 31 12-42 114-144 (562)
132 3tnf_B LIDA, RAS-related prote 25.3 57 0.0019 26.1 3.3 32 82-113 21-52 (384)
133 1zme_C Proline utilization tra 25.0 48 0.0016 19.3 2.3 20 73-92 45-64 (70)
134 1jg7_A BGT, DNA beta-glucosylt 24.9 1E+02 0.0035 24.0 4.6 50 52-103 287-336 (351)
135 4etp_A Kinesin-like protein KA 24.8 1.9E+02 0.0066 23.2 6.6 41 72-112 10-50 (403)
136 3uux_B Mitochondrial division 24.8 2.3E+02 0.0079 21.6 6.6 37 75-111 187-223 (242)
137 3m9b_A Proteasome-associated A 24.8 85 0.0029 24.2 4.2 41 75-115 57-97 (251)
138 2no2_A HIP-I, huntingtin-inter 24.7 1.5E+02 0.0053 19.5 12.9 38 12-49 5-42 (107)
139 1vq8_U 50S ribosomal protein L 24.2 9.2 0.00031 23.7 -1.1 17 54-70 10-26 (66)
140 3w03_C DNA repair protein XRCC 24.0 2.1E+02 0.0072 20.8 6.4 39 72-110 145-183 (184)
141 4a3a_A Amphiphysin; structural 23.9 2.1E+02 0.007 21.2 6.2 49 77-125 36-84 (243)
142 3v2d_2 50S ribosomal protein L 23.9 1.3E+02 0.0045 18.4 5.6 23 1-23 16-38 (72)
143 1d7m_A Cortexillin I; coiled-c 23.6 1.6E+02 0.0055 19.3 6.1 41 75-115 21-61 (101)
144 3qne_A Seryl-tRNA synthetase, 23.5 3.2E+02 0.011 22.7 11.5 31 87-117 79-109 (485)
145 1ci6_A Transcription factor AT 23.3 1.2E+02 0.0042 17.9 7.0 28 75-102 26-53 (63)
146 4dk0_A Putative MACA; alpha-ha 23.2 2.4E+02 0.0084 21.3 9.8 37 2-38 64-100 (369)
147 3ueb_A Putative uncharacterize 23.2 1.3E+02 0.0043 20.0 4.2 40 56-116 67-106 (110)
148 3u06_A Protein claret segregat 23.0 3E+02 0.01 22.2 7.8 45 5-49 14-58 (412)
149 3nmd_A CGMP dependent protein 23.0 1.4E+02 0.0049 18.5 7.8 44 5-48 23-66 (72)
150 2dq0_A Seryl-tRNA synthetase; 22.4 3.2E+02 0.011 22.3 11.9 32 87-118 77-108 (455)
151 3m9b_A Proteasome-associated A 22.3 1.7E+02 0.0058 22.5 5.5 37 78-114 53-89 (251)
152 2fic_A Bridging integrator 1; 22.2 1.6E+02 0.0055 21.3 5.3 68 56-123 23-96 (251)
153 1r8e_A Multidrug-efflux transp 22.0 2.3E+02 0.0079 20.5 7.2 37 71-107 78-114 (278)
154 1ybx_A Conserved hypothetical 22.0 99 0.0034 21.7 3.8 7 69-75 102-108 (143)
155 2wh0_Q Pkcev3, protein kinase 22.0 80 0.0027 16.2 2.4 15 100-114 13-27 (31)
156 3tq7_B Microtubule-associated 21.6 1.5E+02 0.0052 18.8 4.3 50 75-124 4-53 (82)
157 3ljm_A Coil Ser L9C; de novo d 21.3 96 0.0033 15.9 4.2 15 89-103 11-25 (31)
158 3s9g_A Protein hexim1; cyclin 21.1 1.9E+02 0.0065 19.2 6.2 52 69-120 31-85 (104)
159 2y3a_B Phosphatidylinositol 3- 20.8 2.2E+02 0.0076 22.1 6.0 48 65-112 83-130 (302)
160 3tul_A Cell invasion protein S 20.8 2.3E+02 0.008 20.1 7.3 81 7-92 51-131 (158)
161 2wq1_A General control protein 20.3 1.1E+02 0.0038 16.2 4.5 20 83-102 4-23 (33)
162 1q06_A Transcriptional regulat 20.3 2E+02 0.0068 19.1 5.8 33 70-102 77-109 (135)
163 3fse_A Two-domain protein cont 20.1 2.3E+02 0.0078 22.5 6.1 15 1-15 236-250 (365)
164 4emc_A Monopolin complex subun 20.1 2.7E+02 0.0091 20.5 6.4 40 71-110 19-58 (190)
No 1
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.89 E-value=1.2e-22 Score=141.55 Aligned_cols=114 Identities=20% Similarity=0.320 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~ 84 (129)
++.+.++++..++..++++++.+..++..++.+++++.+|.+||..+|+|++||++||++||..|++++...|+++++.+
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL 82 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 85 ESAIAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
+.+|+.|+++.+++++++++++.+|+++++++|+
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~~~~~~ 116 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSALRPPTA 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999988763
No 2
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.86 E-value=3.3e-21 Score=132.52 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHH
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIA 89 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~ 89 (129)
|+++..++..++++++.+.+++..++++++++.+|.+||+.+|+|++||++||.+||..|++++...|+++.+.++.+|+
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 90 ALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 90 ~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
.|+++.+++++++++++.+|+++++
T Consensus 83 ~le~~~~~~~~~l~~lk~~l~~~~~ 107 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQVNIQEAMK 107 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998763
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=98.98 E-value=2.1e-09 Score=77.96 Aligned_cols=109 Identities=20% Similarity=0.224 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCC-CCchhhhhhh--------------------
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNK---EGEKKRAYLTLEELRQLP-DNTNTYKSIG-------------------- 62 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~---e~~~r~~~lT~~EL~~l~-~dt~vYk~VG-------------------- 62 (129)
.+.+.++......+++.+..+..++..+ ...+.++..+++.|..++ ++..+|.++|
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG 87 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVG 87 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeC
Confidence 4457777888888999999999999999 999999999999999999 8999999977
Q ss_pred -hhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 63 -RTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 63 -rmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
..||..|.++.++-++.+++.++..++.+++....+..++...+.+|+++.+.
T Consensus 88 ~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 88 SGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp TTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred CCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999865
No 4
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=98.94 E-value=1e-08 Score=72.54 Aligned_cols=106 Identities=14% Similarity=0.185 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCch--------------------hhhhhhh-hhh
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP--DNTN--------------------TYKSIGR-TFV 66 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~--~dt~--------------------vYk~VGr-mFv 66 (129)
+++++......++.+..+..++..+...+.+..-+++.|+.++ ++.. ||-.||- .||
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~v 82 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI 82 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEE
Confidence 4667777888999999999999999999999999999988887 4544 6677995 999
Q ss_pred ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
..|.++.++-|+.+++.++..++.+++....+..++..++..|++++++
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999864
No 5
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=95.92 E-value=0.15 Score=33.48 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045953 17 MIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKE 96 (129)
Q Consensus 17 ~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~ 96 (129)
..+++=.+++++.=.+.++-..++.+.+.-=+..+..+.++|++....+|..++++.+++++--.=...-+|..|.++++
T Consensus 6 ayel~lel~qir~lr~~~elkmkeleyaegiit~~k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ek 85 (99)
T 3aei_A 6 AYELQLELQQIRTLRQSLELKMKELEYAEGIITSLKSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREK 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666677788888888888889999999999999999999999999999998887788888999988888
Q ss_pred HHHHHHHH
Q 045953 97 YLEKQKAE 104 (129)
Q Consensus 97 ~Le~~l~e 104 (129)
.+-..+..
T Consensus 86 eime~ls~ 93 (99)
T 3aei_A 86 EIMEELSK 93 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766654
No 6
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=95.84 E-value=0.22 Score=33.23 Aligned_cols=103 Identities=16% Similarity=0.261 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESA 87 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~ 87 (129)
|.+-++.....+....+..+...+..++..+......+.++...++.=| -||.-.=......++++.......+...
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CP---vCgs~l~~~~~~~~i~~~~~~l~~l~~~ 79 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCP---VCGRELTDEHREELLSKYHLDLNNSKNT 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECT---TTCCEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666777777777777777777778876321112 2344332233456788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 88 IAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
+..|..+...++..++.+...+++++
T Consensus 80 i~~l~~~i~~l~~~~~~l~~~~~~~~ 105 (112)
T 1l8d_A 80 LAKLIDRKSELERELRRIDMEIKRLT 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887443
No 7
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=95.58 E-value=0.064 Score=36.03 Aligned_cols=101 Identities=10% Similarity=0.018 Sum_probs=73.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCchhhhhhhhhhhccChHHHHHHHHHH
Q 045953 3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEEL--RQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQR 80 (129)
Q Consensus 3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL--~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~ 80 (129)
+.++-..|+.++.++..+..++..+..++...+..+.+.......= -..=+ +||-..-.--+....+.-++.++..
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG--~vfv~~~~~ea~~~L~~~~e~ie~~ 85 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVG--TLIVKTTKDKAVAELKEKIETLEVR 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEET--TEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhh--HHHhhccHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888888888888888888887777665431 11112 3454444555566777778888888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953 81 LKDSESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 81 ~~~~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
++.++..+..++++-..++..+.+.
T Consensus 86 i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 86 LNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888877654
No 8
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=94.98 E-value=0.13 Score=34.02 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHh
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEE--LRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLK 82 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~E--L~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~ 82 (129)
++-+.|+.++.++..+..+++.+..++...+..+.+..+..+. +-.+=+ +||-..-.--+....+.-++.++..++
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG--~vfv~~~~~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSG--NILIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEET--TEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHh--HHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999888888876543 222222 344444555567777888888899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 045953 83 DSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 83 ~~e~~i~~Lekq~~~Le~~l~e 104 (129)
.++..+..++++-..++..+.+
T Consensus 83 ~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888887753
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=93.91 E-value=0.18 Score=29.10 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
..-+++.++..+.+.+|.||.+|+.+...|...+.
T Consensus 6 ~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 6 IMYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999888887764
No 10
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=93.36 E-value=2.1 Score=34.75 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.+.+.|+.++...+.+|+.|+.+.+.|+.++++...++.++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677888888888899999999999999999999888775
No 11
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=85.96 E-value=2.3 Score=24.22 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLE 99 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le 99 (129)
=.++|..+...++++|.+|++.-..|.
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444444444555555544444433
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.43 E-value=10 Score=28.69 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=6.7
Q ss_pred Cchhhhhhhh
Q 045953 54 NTNTYKSIGR 63 (129)
Q Consensus 54 dt~vYk~VGr 63 (129)
+.+-|.++.+
T Consensus 88 ~~kE~~aL~k 97 (256)
T 3na7_A 88 SERELRSLNI 97 (256)
T ss_dssp SSSHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5667777665
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.04 E-value=6.2 Score=36.20 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=14.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
.+|+++++.++..+.++.+..+.++....+++..|
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333333
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.10 E-value=8.8 Score=32.86 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.+|-++|+.++..++.+|..--.+..-|+..|++.-..|+.|
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557777777777777666666666666666666655543
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.56 E-value=22 Score=32.66 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
+.++|.+++..++.....|+.+...|+..+.+.+.
T Consensus 1017 ~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1017 YKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555544444444
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.46 E-value=18 Score=33.29 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAY 42 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~ 42 (129)
.+.+.++..++......+..+..++..++.++..+.
T Consensus 863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.41 E-value=27 Score=35.90 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=47.8
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 68 EPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 68 ~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
.|+..-+.+++++.+.+..++...+.+...++.++..++.++.++++.+..|..++
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999988887777666554
No 18
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=81.24 E-value=4.5 Score=31.05 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=30.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
++++++++..+++++..+....+..++.++..+.+|+|+-
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888777777777777777777777764
No 19
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=79.04 E-value=4.2 Score=23.16 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=24.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
++|-.+++..+-+|.+-+.+...|++++++++.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777888888887777777777765
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.12 E-value=20 Score=27.05 Aligned_cols=45 Identities=7% Similarity=0.059 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQ 50 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~ 50 (129)
+...+.++...+..+...+..+...+..++++++..+.-..++..
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666665555543
No 21
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=77.36 E-value=8.3 Score=22.29 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
+++++++.++..++.|..+-..|-..+..++..|+..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888888888888877654
No 22
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=73.04 E-value=6.9 Score=24.88 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
=+.+|+.++.-.+.-|..|......-++.+..++..++-+...
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555566666555544
No 23
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=71.83 E-value=16 Score=22.92 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953 41 AYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 41 ~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l 102 (129)
+.-...+|..+-|+.+ ..-..++-|+..--+++..|......++.++..|..+...|+.++
T Consensus 17 in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888755432 112344444444445555555555555555555555555554444
No 24
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.23 E-value=18 Score=23.51 Aligned_cols=96 Identities=9% Similarity=0.049 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDS 84 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~ 84 (129)
++.+.+.++..++..++.....+..++..+...+...... ...=.+ =.....+-++.-+......-..++...+..+
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPv--Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l 83 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA-KGKCPV--CGRELTDEHREELLSKYHLDLNNSKNTLAKL 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECTT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCC--CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888888888776543 111111 1111111222234445566677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045953 85 ESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 85 e~~i~~Lekq~~~Le~~l~ 103 (129)
...+..++.....|...+.
T Consensus 84 ~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 84 IDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887776
No 25
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=70.85 E-value=13 Score=23.55 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=26.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
++++++++.++..+..|..+-.+|-..+..++..|+..+
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRL 41 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777777777777776666544
No 26
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=69.47 E-value=7.1 Score=25.00 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=24.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+++|..+.+.+..++.++......++.++.+++..++.
T Consensus 39 vdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 39 VDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777788888888888888888888888888887764
No 27
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=69.01 E-value=9.5 Score=25.57 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=30.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
...+...+..++..|+.++..|...+...+.+|+.+..
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566778888888999999999999999999988874
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.83 E-value=44 Score=26.90 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=30.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
...++++.+.++-..+++--..+...+.+....+++++.+...+|.+|+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQLG 487 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhcC
Confidence 3344444444445555555555556666666777778888888888874
No 29
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=68.60 E-value=32 Score=31.57 Aligned_cols=26 Identities=4% Similarity=0.203 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 13 IKGRMIENTGKMKQVQNQMRNKEGEK 38 (129)
Q Consensus 13 lq~k~~~~qqql~~v~~Q~~~~e~~~ 38 (129)
+..++..+...+..+...+..++..+
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l 887 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKH 887 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333333
No 30
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.55 E-value=25 Score=23.87 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
+.++.-.+..++.++..+.++...|+.++.+++....
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888887776544
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.53 E-value=55 Score=26.83 Aligned_cols=13 Identities=8% Similarity=0.307 Sum_probs=6.4
Q ss_pred CCchhhhhhhhhh
Q 045953 53 DNTNTYKSIGRTF 65 (129)
Q Consensus 53 ~dt~vYk~VGrmF 65 (129)
+-...+.-+++.+
T Consensus 499 ~~~~~~~~l~~~~ 511 (597)
T 3oja_B 499 GLARSSDNLNKVF 511 (597)
T ss_dssp SSSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 3344555555543
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=65.47 E-value=26 Score=22.99 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=12.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
+...++.+|.+|.++..-++..+..++..|.
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443333
No 33
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=64.63 E-value=21 Score=22.54 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=31.0
Q ss_pred hhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 63 RTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 63 rmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
+.=|+..--+++..|.++...+..++..|..+...|..+++
T Consensus 38 k~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 38 TLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666777888888888888888888887777777765
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.20 E-value=20 Score=22.25 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=33.9
Q ss_pred hhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 63 RTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 63 rmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.|= .-+...+.+|+.++..++.....|......|...+..+...+..
T Consensus 21 RafR-eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 21 RAFR-KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 45667778888888888877777777777777777777766654
No 35
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=63.08 E-value=18 Score=20.47 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASK-------EYLEKQKAEVESNL 109 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~-------~~Le~~l~e~e~~L 109 (129)
.++..|+..+.+++.+-.+|.++. .||++.+..+...|
T Consensus 3 nlvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 466778888888888888887763 46666666555444
No 36
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=60.47 E-value=21 Score=20.21 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQ 101 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~ 101 (129)
.++.+|+.+.+.++.+...|+.+...|+..
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888888888888887777776654
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.30 E-value=42 Score=23.33 Aligned_cols=37 Identities=8% Similarity=0.122 Sum_probs=17.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
.+|+.+...+..++..+.+....|.+.+.+++.++.+
T Consensus 92 ~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 92 YDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 38
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=58.21 E-value=32 Score=21.70 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=34.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 79 QRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
+-+-.+...+..|+++..+|+..+.+-...-++.+..++.-|-..
T Consensus 6 ~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~a 50 (79)
T 4abm_A 6 EAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQA 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 345567778888889999999999888888888887666655443
No 39
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=58.15 E-value=53 Score=24.15 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT 64 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm 64 (129)
|.+-|.-.....+.++....=...+..--+.+.-...+|+.|+|+.|-|.-|.|-
T Consensus 102 L~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~dP~Y~K~~~~ 156 (201)
T 3u0c_A 102 LSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSRE 156 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccHH
Confidence 3333333333444444444444444444455666778999999999999999884
No 40
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=57.66 E-value=35 Score=21.91 Aligned_cols=16 Identities=31% Similarity=0.437 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 045953 98 LEKQKAEVESNLAELL 113 (129)
Q Consensus 98 Le~~l~e~e~~Lrell 113 (129)
|......-++.|+.++
T Consensus 60 Lk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 60 LKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333344433
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.41 E-value=28 Score=23.71 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=26.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
+.++.-.+..++.+|.++.++...|+.++.+++....
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4567777777777888887777777777777766544
No 42
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=56.34 E-value=36 Score=21.70 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=39.8
Q ss_pred HHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953 42 YLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 42 ~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
.-....|..+=|+.+--.-+-++-|+..--+++..|......+...+..|..+...|..++.++
T Consensus 22 n~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 22 KRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666333221123555666666677777777777777777777777777777766654
No 43
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=56.05 E-value=89 Score=26.12 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 88 IAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
.+.|..+.+.++..+.+++..+.+++..=|+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 143 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGN 143 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5566666666777777777777777765443
No 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.31 E-value=30 Score=20.42 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
.....+|..+.+.++.+...|......|...+..+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666655555554443
No 45
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=54.73 E-value=32 Score=23.20 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Q 045953 3 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEK-------KRAYLTLEEL 48 (129)
Q Consensus 3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~-------r~~~lT~~EL 48 (129)
..++.+.+.+...++..+.++++.+...+..+++++ |.+++-..+-
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888888887663 4555544443
No 46
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=54.33 E-value=20 Score=22.75 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=18.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l 102 (129)
.-+.+...++.++.+|+.+..||+.++
T Consensus 42 sce~KLa~ln~KL~~LEr~L~iLEAkl 68 (75)
T 3p8c_E 42 SCRSRLATLNEKLTALERRIEYIEARV 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777665
No 47
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=53.95 E-value=42 Score=21.70 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=14.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 79 QRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
+.++.-...|+.|++....+.+.++++.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555555555555555555554443
No 48
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=53.75 E-value=47 Score=22.76 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.+....-|.++.+.++.+|..|+.....|+..+...+..+..
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 120 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIP 120 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888888888777765543
No 49
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.10 E-value=21 Score=22.83 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=10.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953 79 QRLKDSESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
.+...++.+-..|+.+...++..++++
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s 39 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEA 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444333
No 50
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=52.63 E-value=24 Score=22.23 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
.-+.+...++.++..|+.+..||+.++.
T Consensus 42 sce~KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 42 STRNKLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666777777777777777777664
No 51
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=50.26 E-value=43 Score=20.77 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=38.6
Q ss_pred ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.|+.+++..--+=+..+...+..|+.....|......++..|..
T Consensus 35 k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 35 KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999998888888888888887764
No 52
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=50.26 E-value=62 Score=22.62 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=13.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESN 108 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~ 108 (129)
.+...+..+..++..+......+...+..+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (284)
T 1c1g_A 80 DAEADVASLNRRIQLFEEELDRAQERLATALQK 112 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433333333
No 53
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=50.12 E-value=59 Score=22.27 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=26.2
Q ss_pred hhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 045953 64 TFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEK 100 (129)
Q Consensus 64 mFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~ 100 (129)
.|.......+++.+..-.+.++.+|+..++...+.+.
T Consensus 67 ~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ 103 (119)
T 3etw_A 67 RFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777777777777777787777777776654
No 54
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=49.55 E-value=72 Score=23.12 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLE 46 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~ 46 (129)
|+.++.+.+...+.+++..+..+......++.+.....-.+.
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666666666666666666655554443
No 55
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=49.26 E-value=30 Score=18.65 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=18.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
+...++++++.|-.....|+..+. .|++++++
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~----rLk~ll~~ 33 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVX----RLKXLVXE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHSC
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHhc
Confidence 344566666666666666665553 45555543
No 56
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.18 E-value=59 Score=22.00 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.-+..+.++.++.+..+.....|...+..++..+.++...|.++
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777788888888888888888888888888888887765
No 57
>4doh_A Interleukin-20; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Probab=48.99 E-value=19 Score=25.59 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh
Q 045953 2 SDEANRAAFQEIKGRMIENTGKMKQVQNQM--RNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT 64 (129)
Q Consensus 2 ~d~el~k~~~Elq~k~~~~qqql~~v~~Q~--~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm 64 (129)
+++....-+.-+...+..++..|+...... .--+...+....-.+...+++++..+||++|-+
T Consensus 78 ~~~~~~~~vsslan~f~~L~~~L~~C~~~~~C~~~~~~~~~~~~ik~~f~kL~~~~g~~KAiGEL 142 (153)
T 4doh_A 78 PDHYTLRKISSLANSFLTIKKDLRLCHAHMTCHCGEEAMKKYSQILSHFEKLEPQAAVVKALGEL 142 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHhCccccCCCCcHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence 356667777788888888888888876432 111122233344455556677778999999986
No 58
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=48.97 E-value=90 Score=24.07 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 045953 30 QMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESN- 108 (129)
Q Consensus 30 Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~- 108 (129)
.....+..+..+.-+.+.|...++... +.++ .+ .+++.+....+..++..+..+...|+..+..++..
T Consensus 61 ~~~~~~~~~~k~~~~~~~L~~~~~~~~-----~~~~--~~----~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~ 129 (357)
T 3rrk_A 61 ELKRWEAVVSQAEQSLTVVGLATVPSS-----KPFT--GS----LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFG 129 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCS-----SCCC--SC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhcccccccc-----cCCc--ch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455677777888888888887754321 1111 12 45566667777777777777777777777777777
Q ss_pred --HHHH
Q 045953 109 --LAEL 112 (129)
Q Consensus 109 --Lrel 112 (129)
+..+
T Consensus 130 ~~l~~L 135 (357)
T 3rrk_A 130 KAAEKL 135 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 6554
No 59
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.72 E-value=40 Score=19.94 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=13.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 81 LKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 81 ~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
+..++.++..|+.....|...+..+...+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 60
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=48.41 E-value=32 Score=18.75 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=16.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
+.|+++++.+-.+...|+....+|..-+.++
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 3455555555555555555555555544443
No 61
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=48.38 E-value=43 Score=25.58 Aligned_cols=41 Identities=7% Similarity=-0.009 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
.++-+++|+++.+.........++....++.++.++.+++|
T Consensus 11 ~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iR 51 (233)
T 2yko_A 11 LEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVK 51 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667888888888888888888888888888888888876
No 62
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.00 E-value=20 Score=21.07 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 4 EANRAAFQEIKGRMIENTGKMKQVQNQMR 32 (129)
Q Consensus 4 ~el~k~~~Elq~k~~~~qqql~~v~~Q~~ 32 (129)
++|+.-..+|+.+...+..++....+++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777776666666655543
No 63
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.60 E-value=60 Score=21.65 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhh-hh-hh--------hhccChHH-------------H
Q 045953 17 MIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKS-IG-RT--------FVLEPKSV-------------L 73 (129)
Q Consensus 17 ~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~-VG-rm--------Fv~~~k~~-------------i 73 (129)
+.+....++.+..+++.+...+....-...++...-+.-..... -| .+ ||....++ +
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~v 82 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI 82 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEE
Confidence 34566667777777777777777777777777665433333331 11 11 22111111 2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
...+++-++-++.+++.|+...+.+++.+.....+++.+..
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566667777777777777777777777777777666553
No 64
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=47.60 E-value=67 Score=22.18 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=41.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMSM 126 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~~ 126 (129)
|-++++....+...|-.+-+-+...-+++-+.||-.+...-++.|+|+..
T Consensus 48 Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~ 97 (123)
T 4aj5_K 48 LLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQ 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555677788888888888888888899999999999988999998764
No 65
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.52 E-value=59 Score=21.58 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCC-CCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHH
Q 045953 20 NTGKMKQVQNQMRNKEGEKKRAYLTLEEL---RQL-PDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASK 95 (129)
Q Consensus 20 ~qqql~~v~~Q~~~~e~~~r~~~lT~~EL---~~l-~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~ 95 (129)
+...+..+......+.+.+...+.=+.-. ... |.+|+|+. |...|-.......++.++.+...+..|....
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH-----~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLH-----MSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEE-----ESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeee-----ecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333331 111 44667765 7788888888888888888888887776654
Q ss_pred HHH
Q 045953 96 EYL 98 (129)
Q Consensus 96 ~~L 98 (129)
..|
T Consensus 92 ~~l 94 (100)
T 1go4_E 92 RAM 94 (100)
T ss_dssp TTC
T ss_pred HHH
Confidence 433
No 66
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=47.18 E-value=53 Score=20.93 Aligned_cols=39 Identities=5% Similarity=0.224 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 8 AAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLE 46 (129)
Q Consensus 8 k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~ 46 (129)
..+.+|+.++.++++.+..++.+++....++..+.--..
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888877777766654433
No 67
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.11 E-value=69 Score=22.19 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 045953 6 NRAAFQEIKGRMIENT 21 (129)
Q Consensus 6 l~k~~~Elq~k~~~~q 21 (129)
|+++..-+-.++.+..
T Consensus 30 L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 30 LQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 68
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=46.51 E-value=31 Score=23.87 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCCCchhhhhh---h-hhhhccCh--------------
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRA---YLTLEELRQLPDNTNTYKSI---G-RTFVLEPK-------------- 70 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~---~lT~~EL~~l~~dt~vYk~V---G-rmFv~~~k-------------- 70 (129)
+++.++.+....++.+..+++.+...+... .-...|+...- ...+.+ | .++|.-..
T Consensus 6 ~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l---~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V 82 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETL---ENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNA 82 (151)
T ss_dssp SSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTCCCSSCEEEEECSSSCEEEEECSCTTEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccCCceEEEEcCCCeEEEEEECCCCEE
Confidence 345566666777777777777777777666 43333433331 122222 1 23333111
Q ss_pred -------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 71 -------SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 71 -------~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
=-+...+++-.+.++.+++.|++..+.+++.+.....++..+...
T Consensus 83 ~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~ 134 (151)
T 2zdi_C 83 IVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARK 134 (151)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112245677777777777777777777777777777777766543
No 69
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=45.84 E-value=83 Score=22.77 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=64.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhh-----------hhhccCh
Q 045953 2 SDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGR-----------TFVLEPK 70 (129)
Q Consensus 2 ~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGr-----------mFv~~~k 70 (129)
|.+++-+.|.++..++....+.+..+-..-.....++..-.-|++.... ..++|+-=.+ .|-...-
T Consensus 11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E---~ik~FeeQ~~~qer~~~~~~~~f~~e~~ 87 (170)
T 3l4q_C 11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNE---TIKIFEEQGQTQEKSSKEYLERFRREGN 87 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHSSSTTGGGSSSSSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHhhcC
Confidence 3467778888888888888888877776666666665555555444332 2345544322 2333333
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.=+..|.+..+.+..+++.|......|+..++......++
T Consensus 88 ~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~re 128 (170)
T 3l4q_C 88 EKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNRE 128 (170)
T ss_dssp SSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43344566666667777777777777777666655555543
No 70
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=45.50 E-value=37 Score=20.06 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
+-....+|..+++.++.+...|......|...+..+..
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888888888877765443
No 71
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.07 E-value=60 Score=26.24 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=26.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
..|+++++.++.+...|+...+.++..++++...+++.-..++.|--++
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555444444444444
No 72
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=44.45 E-value=60 Score=20.80 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNK 34 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~ 34 (129)
+|.+.+-|+.+.++..++..++.||...
T Consensus 42 rKlLaeAQqmL~DSk~KIe~lRmqI~k~ 69 (81)
T 1urf_A 42 RKLLLTAQQMLQDSKTKIDIIRMQLRRA 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999654
No 73
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.23 E-value=1.3e+02 Score=24.58 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEEL 48 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL 48 (129)
|...+...+..+-..=+.|..+..+++.+..+....-.++...
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444445555555555444444444
No 74
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=43.69 E-value=46 Score=19.25 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQ 101 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~ 101 (129)
.+.++..|+.....++.+|..|++....|++.
T Consensus 22 lenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 35566777777777777777777766666553
No 75
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.74 E-value=3.1e+02 Score=28.53 Aligned_cols=91 Identities=10% Similarity=0.132 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHH---HHHHHHHh
Q 045953 6 NRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLM---NEQEQRLK 82 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~---~eL~e~~~ 82 (129)
++..+.+++.++..++.+|+.+...+..++..+...+--.++... .+..+. +....+.+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~------------------ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR------------------ETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666665555544443332222210 122222 23445666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 83 DSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 83 ~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
.++.=|..|...+.++..+.++...++.-+++
T Consensus 2074 rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2074 RSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHhccH
Confidence 66777888888999999999999888887764
No 76
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.29 E-value=51 Score=19.33 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=25.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
++....++.++..|+.....|...+..++.++..+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888887777766544
No 77
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=41.95 E-value=41 Score=22.65 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e 104 (129)
++.+....|+..+.....+|..+..+.-.++.++..
T Consensus 66 nVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~ 101 (106)
T 2yny_A 66 NVGSALSALNTSMKQIEDKIEEILSKIYHIENEIAR 101 (106)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666665543
No 78
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=41.02 E-value=55 Score=22.48 Aligned_cols=43 Identities=9% Similarity=0.076 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.+....-|.++.+.++.+|..|+.....|+..+...+..+..
T Consensus 92 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 92 TILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456667777788888888888888777777777666554443
No 79
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.87 E-value=48 Score=18.67 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=20.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQ 101 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~ 101 (129)
+..+.++...+..|..|.++.+.|+..
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667888888888888888877764
No 80
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=40.63 E-value=87 Score=21.51 Aligned_cols=47 Identities=4% Similarity=-0.029 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQV-----QNQMRNKEGEKKRAYLTLEE 47 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~v-----~~Q~~~~e~~~r~~~lT~~E 47 (129)
||++||.+.+.++...+..+.-+.... -+++..+.+++-++.-.+.|
T Consensus 13 ~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~e 64 (124)
T 4a17_U 13 QTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINE 64 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888777666554 36677777777777665554
No 81
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=40.40 E-value=3.8 Score=23.58 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.0
Q ss_pred CchhhhhhhhhhhccCh
Q 045953 54 NTNTYKSIGRTFVLEPK 70 (129)
Q Consensus 54 dt~vYk~VGrmFv~~~k 70 (129)
+.++|-+=|+|||..|-
T Consensus 3 g~~IyPG~G~~~Vr~Dg 19 (45)
T 3jyw_S 3 GAKIYPGRGTLFVRGDS 19 (45)
T ss_dssp CCCCCTTCCCEECTTTS
T ss_pred CCcccCCCCeEEEecCC
Confidence 45788999999999874
No 82
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.01 E-value=80 Score=25.02 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=17.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
+..+...+..|..|+.....++.++.+++..|.++.
T Consensus 18 e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 18 EQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555444433
No 83
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=39.67 E-value=51 Score=18.57 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 82 KDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 82 ~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
..+..+-..|+++...|+.++..+.+.|.
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777776666654
No 84
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=39.16 E-value=74 Score=20.32 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSES-------AIAALQASKEYLEKQKAE 104 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~-------~i~~Lekq~~~Le~~l~e 104 (129)
++.+.|+.++..+=+ +|+.|+-+...|.....+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655 444454444444444444
No 85
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.81 E-value=68 Score=19.77 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQVQ-----NQMRNKEGEKKRAYL 43 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~v~-----~Q~~~~e~~~r~~~l 43 (129)
||++||.+.+.++...+..+.-+...-. .++..+.+++-++.-
T Consensus 9 ~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~T 56 (72)
T 3j21_W 9 MSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLT 56 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 5677777777777766666554443332 334444444444433
No 86
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=38.67 E-value=95 Score=24.71 Aligned_cols=25 Identities=4% Similarity=-0.098 Sum_probs=21.9
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHH
Q 045953 68 EPKSVLMNEQEQRLKDSESAIAALQ 92 (129)
Q Consensus 68 ~~k~~i~~eL~e~~~~~e~~i~~Le 92 (129)
-|-++..++|+++.+.+..++.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 243 INFDEYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999885
No 87
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=37.95 E-value=46 Score=19.50 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=24.6
Q ss_pred hhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 045953 64 TFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQ 101 (129)
Q Consensus 64 mFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~ 101 (129)
=|-...++..++.+.+..+.+..++..|+.+...++.+
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555677778888777777777777777776666554
No 88
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=37.86 E-value=72 Score=19.79 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
+.+.+..-|.++.+.++.+|..|+.....|+..+...
T Consensus 36 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 36 TCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888888888888887777766533
No 89
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=36.85 E-value=63 Score=20.35 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=13.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 79 QRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 79 e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
...+.++.+|..|+.+...|+..+.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555554
No 90
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=36.79 E-value=1.3e+02 Score=22.57 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 2 SDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRA 41 (129)
Q Consensus 2 ~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~ 41 (129)
++.++...+.+.+..+..++.++.....+....+.+..+.
T Consensus 63 d~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 102 (341)
T 3fpp_A 63 DPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ 102 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777766666666666666555555444443
No 91
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=36.44 E-value=67 Score=20.62 Aligned_cols=29 Identities=0% Similarity=-0.065 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQ 101 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~ 101 (129)
..+-|.++.+.++.++..|+.....|+..
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRT 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444443
No 92
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.11 E-value=79 Score=19.72 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=13.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVE 106 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e 106 (129)
..+...++.+-..|+.+...++..+++++
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 93
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.04 E-value=78 Score=19.62 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=14.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
.+.+..+..+|..|+......+..+.+++..|.+
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 94
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=35.77 E-value=93 Score=20.47 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHH
Q 045953 69 PKSVLMNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 69 ~k~~i~~eL~e~~~~~e~~i~~Lek 93 (129)
-++...++|+++++.++.+|..|+.
T Consensus 44 ~Vd~t~~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 44 QVDMTQKHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777776666554
No 95
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=35.43 E-value=43 Score=21.66 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 82 KDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 82 ~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
++++.+|..|+.+...|+..+.++..
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544443
No 96
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=35.42 E-value=75 Score=19.27 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=34.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGL 119 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~ 119 (129)
+++.-....|.+|..|-+-...+...+.-.+..|..+..-...|
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 45666677888899999888888888888888888876555444
No 97
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.38 E-value=1.8e+02 Score=23.70 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 87 AIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 87 ~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
.|..|+.....++.++..++..|.++.
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 98
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=35.05 E-value=55 Score=17.61 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=19.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e 104 (129)
..+......+|..|+++-..|+.++.-
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 345566777888888888888877653
No 99
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=34.86 E-value=37 Score=19.82 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASK 95 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~ 95 (129)
.++++|+.++..++.+...|..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333
No 100
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.72 E-value=99 Score=20.47 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=15.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
....+..+|++|+.....|.+..+.++..|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554
No 101
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.64 E-value=1.2e+02 Score=24.68 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=27.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
..|.+....+.++++.|+.+.+.+...+++..++|.+.-..++.|--.|+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666666666666665554444444444444
No 102
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.60 E-value=1.1e+02 Score=24.15 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=16.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.+++..++..|...+.+...|+..++..+..|.++
T Consensus 11 ~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 11 LEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555444444443
No 103
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=33.95 E-value=75 Score=18.81 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
....+|..+++.++.+-..|......|...+..+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554444433
No 104
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=33.84 E-value=77 Score=20.11 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 82 KDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 82 ~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.+..+++.++..-..|+.++..++..|.+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 105
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.51 E-value=89 Score=19.53 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=26.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
++.+++..+|.++.=.+...+.|...+-..+..|..+-..=..|+++|.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555544
No 106
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.86 E-value=50 Score=16.46 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 045953 3 DEANRAAFQEIKGRMIENTGKMK 25 (129)
Q Consensus 3 d~el~k~~~Elq~k~~~~qqql~ 25 (129)
-+||.|.+..+|..+..+...++
T Consensus 3 adelykeledlqerlrklrkklr 25 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 36788888888888877776654
No 107
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=32.28 E-value=73 Score=18.18 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045953 84 SESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e 104 (129)
+|+++..|+...+-|++++.-
T Consensus 3 lEekv~~Le~~ld~LqTr~Ar 23 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFAR 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444454444444444444443
No 108
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.43 E-value=2.1e+02 Score=23.34 Aligned_cols=22 Identities=5% Similarity=0.157 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045953 6 NRAAFQEIKGRMIENTGKMKQV 27 (129)
Q Consensus 6 l~k~~~Elq~k~~~~qqql~~v 27 (129)
+++.+.+|...+.+.++.-..+
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~~ 86 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKDS 86 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhHH
Confidence 4444444444444444444333
No 109
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=31.26 E-value=1.4e+02 Score=21.08 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=27.2
Q ss_pred hhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 57 TYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 57 vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
-..-||+|+-. -..-++.|.++-.....+|.+|...-..+++++..++..|.
T Consensus 33 EL~iVgkML~E--EqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 33 ELEIVGNMLRE--EQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455665422 12234455555555555566665555666666666555554
No 110
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.64 E-value=2.3e+02 Score=23.53 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045953 88 IAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 88 i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
|..|+...+.+..++..++..+.
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444433
No 111
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.46 E-value=97 Score=19.04 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNL 109 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~L 109 (129)
...+.+++.+.+..=+++|..|+.....=...+.++..+|
T Consensus 9 ~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 9 TSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554444444444333333
No 112
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.35 E-value=90 Score=18.62 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=13.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
....++.++..|+.....|...+..+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 113
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.28 E-value=1.3e+02 Score=20.14 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=31.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045953 76 EQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQD 116 (129)
Q Consensus 76 eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~ 116 (129)
.+-++.-..+.++..|..+...|...+.+++..+.++....
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~ 48 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGREN 48 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44455566777888999999999999988888888775443
No 114
>1n1f_A Interleukin-19; cytokine, four helix bundle, immune system; HET: NAG; 1.95A {Homo sapiens} SCOP: a.26.1.3
Probab=29.26 E-value=59 Score=23.16 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh
Q 045953 3 DEANRAAFQEIKGRMIENTGKMKQVQNQM--RNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT 64 (129)
Q Consensus 3 d~el~k~~~Elq~k~~~~qqql~~v~~Q~--~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm 64 (129)
++..+..+.-+...+..+...|+.+.... .--+...+....-.+...++++...+||++|-+
T Consensus 79 ~~~~~~~vssLan~f~~L~~~L~~C~~~~~C~~~~~~~~~v~~ik~~f~kL~~~~g~~KAiGEL 142 (159)
T 1n1f_A 79 NPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYDQLEVHAAAIKSLGEL 142 (159)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHTH
T ss_pred CccccchHHHHHHHHHHHHHHHHhchhccCCCCcHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 46677778888888888888888876442 011122233444445556676667899999986
No 115
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=29.02 E-value=1.4e+02 Score=20.26 Aligned_cols=34 Identities=3% Similarity=0.058 Sum_probs=27.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
++..++..|.+++++..+|..-+...-..+|+.+
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888888876
No 116
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.99 E-value=1.7e+02 Score=21.42 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHH
Q 045953 9 AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAI 88 (129)
Q Consensus 9 ~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i 88 (129)
...+++.++.+++..+.-....-..++.++- -.+..+++- ....=..++++ ....+.++..+..-...+...+
T Consensus 18 ~~~~~~q~~~~le~El~EFqesSrELE~ELE---~eL~~~Ek~--~~~L~~~~~~L--~~E~e~~k~K~~~~~~e~~~~~ 90 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQEGSRELEAELE---AQLVQAEQR--NRDLQADNQRL--KYEVEALKEKLEHQYAQSYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666665542 222222211 11122222222 2233444444444433333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 89 AALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 89 ~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
..|++....|......+...||++=
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555443
No 117
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.76 E-value=1.2e+02 Score=19.47 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhh
Q 045953 9 AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGR 63 (129)
Q Consensus 9 ~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGr 63 (129)
-..+++.++..+.+.-..+..++..++.++....- -|..+|+. +..++|.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~---ll~~~p~~--~~~~~~~ 86 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRN---LFKQLPEP--LLASSGH 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCcHH--HhccccC
Confidence 34677778888888888888888888888776553 34567753 6677775
No 118
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.87 E-value=2.6e+02 Score=23.24 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 84 SESAIAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
+-.+.+.|..+.+.++..+.++++.|.+++..=|+
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN 155 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33445555555556666666777777777655443
No 119
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=27.86 E-value=1.2e+02 Score=19.21 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 045953 31 MRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEK 100 (129)
Q Consensus 31 ~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~ 100 (129)
+.+...++.-...|..||.. |+. .-++++.+|+.....++..|..|..+.+-|+.
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~-----------G~~----KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKK-----------GHQ----KLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHh-----------hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666677664 111 34566777777777777777777766666553
No 120
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.83 E-value=79 Score=17.16 Aligned_cols=20 Identities=10% Similarity=0.131 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 045953 83 DSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 83 ~~e~~i~~Lekq~~~Le~~l 102 (129)
.++.+++.|-.....|+..+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34444444444444444433
No 121
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=27.83 E-value=1.1e+02 Score=19.05 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccC
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEP 69 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~ 69 (129)
-+...+....+.+..+...+..++..++- +++ ..-+|++| +=|..||+.|
T Consensus 12 ~~eT~iaa~~~ev~t~~~~l~~~e~~vqa----L~~-ag~ip~AP---~DG~~YVrkD 61 (74)
T 1avy_A 12 AIETDIASVRQEVNTAKGNISSLQGDVQA----LQE-AGYIPEAP---RDGQAYVRKD 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-TCCCCCCC---CSSCCEEEET
T ss_pred ccccchhhhheeeccccchhhhhhhhhHH----HHh-cCCCCCCC---CCCceeEEec
Confidence 34445555666666666666666665543 233 45566777 6788888766
No 122
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.42 E-value=1.7e+02 Score=20.83 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 99 EKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 99 e~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
+-++.-++..++.+-.-...|.+++|.
T Consensus 109 qlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 109 TIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555556554
No 123
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.28 E-value=1.8e+02 Score=21.24 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
.....|..++-.++..-..|+++.-....++++.+..+..++
T Consensus 102 ~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ai 143 (189)
T 2v71_A 102 AIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAI 143 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555555555566666666666666666666666555
No 124
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=27.27 E-value=1.9e+02 Score=21.36 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=40.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
.+-+-.....+...+..|..+-.+++..++++..++.+++..+..+=..|.
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~ 177 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLY 177 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677778888888888888999999999999988887776655554
No 125
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=27.14 E-value=83 Score=19.89 Aligned_cols=27 Identities=7% Similarity=0.199 Sum_probs=20.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEK 100 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~ 100 (129)
++-|++++..+++++..|+.....|..
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888877766654
No 126
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=27.11 E-value=74 Score=20.39 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=13.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQ 101 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~ 101 (129)
..-|.++.+.++.+|..|+.....|+..
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 103 (108)
T 2vz4_A 76 RAHLRRQHELLSARIGKLQKMAAAVEQA 103 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444443
No 127
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=26.93 E-value=1.5e+02 Score=20.19 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhh
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKMKQV-----QNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSI 61 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql~~v-----~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~V 61 (129)
||++||.+.+.++...+..+.-+.... -+++..+.+++-++.-.+.|-.. ..--..|++-
T Consensus 12 ~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er~~-~~lr~~yk~k 76 (123)
T 2zkr_v 12 KKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQK-ENLRKFYKGK 76 (123)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCC
Confidence 688999999999999888887666554 26777888888887777766553 3345678654
No 128
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.62 E-value=8.9 Score=23.76 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=14.4
Q ss_pred CchhhhhhhhhhhccCh
Q 045953 54 NTNTYKSIGRTFVLEPK 70 (129)
Q Consensus 54 dt~vYk~VGrmFv~~~k 70 (129)
+.++|-+=|+|||..|-
T Consensus 11 g~~IyPG~G~~~Vr~Dg 27 (66)
T 3j21_V 11 GKPFEPGTGKMYVRNDG 27 (66)
T ss_dssp CSBCCTTCCEEEECSSS
T ss_pred CCcccCCCCeEEEecCC
Confidence 56789999999999883
No 129
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.61 E-value=71 Score=20.12 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAAL----QASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~L----ekq~~~Le~~l~e~e~~Lre 111 (129)
.++-++.|..-.+.+..+...| +.....|...+..++.+++.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555555555443 33344444444555555544
No 130
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.28 E-value=1.6e+02 Score=21.72 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=13.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
..+..+.+|+.|.++...++.+....+.
T Consensus 35 ql~~k~~ei~~L~~ql~sl~~~~~~~~~ 62 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSLNAQVKELKT 62 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4444445555555555555444443333
No 131
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.15 E-value=2.3e+02 Score=24.22 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAY 42 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~ 42 (129)
||..+++.++..++...++|..|+..++...
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444333
No 132
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=25.34 E-value=57 Score=26.08 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 82 KDSESAIAALQASKEYLEKQKAEVESNLAELL 113 (129)
Q Consensus 82 ~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell 113 (129)
+.++.++.+|+++..-|..+++.-+.+|-+..
T Consensus 21 e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~ 52 (384)
T 3tnf_B 21 EELEKKLDKLERQGKDLEDKYKTYEENLEGFE 52 (384)
T ss_dssp THHHHHTTHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Confidence 56888999999999999999999988887543
No 133
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.00 E-value=48 Score=19.27 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 045953 73 LMNEQEQRLKDSESAIAALQ 92 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Le 92 (129)
.++.|..++..++..+..|.
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444443
No 134
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=24.85 E-value=1e+02 Score=24.03 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=41.1
Q ss_pred CCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 52 PDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 52 ~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
+++.++-.+ .+ |-..++.++++...+-..+-.-|++.|+-|-.-|++.+.
T Consensus 287 d~~~~i~~~-a~-fyv~nr~elid~in~~k~~~~~r~e~l~~qh~il~k~~~ 336 (351)
T 1jg7_A 287 DTKHRIIND-AR-FYVNNRAELIDRVNELKHSDVLRKEMLSIQHDILNKTRA 336 (351)
T ss_dssp CTTCCSCSC-GG-GEECSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccC-ce-eEecCHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Confidence 444555555 33 888999999999999999999999999999998888764
No 135
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.77 E-value=1.9e+02 Score=23.18 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
.-+.+|+++.+.++..|+.++.....+..++.+.+..-|.+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777777776655544433
No 136
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.77 E-value=2.3e+02 Score=21.62 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAE 111 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lre 111 (129)
+.|....+.+-.++..|+..+-.|+..+..++..|..
T Consensus 187 ~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief 223 (242)
T 3uux_B 187 ENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDF 223 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4455555666667777777777777777666666544
No 137
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.75 E-value=85 Score=24.17 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=23.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
.+|......+..+...|....+.+..++..+.++|..+-++
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555555555555555555555566666666666555443
No 138
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=24.71 E-value=1.5e+02 Score=19.49 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045953 12 EIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELR 49 (129)
Q Consensus 12 Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~ 49 (129)
++-.+..+++.+|....+-...+++.+........++.
T Consensus 5 ~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 5 DLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888998888888888888888888888877
No 139
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=24.20 E-value=9.2 Score=23.71 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.2
Q ss_pred CchhhhhhhhhhhccCh
Q 045953 54 NTNTYKSIGRTFVLEPK 70 (129)
Q Consensus 54 dt~vYk~VGrmFv~~~k 70 (129)
+.++|-|=|+|||..|-
T Consensus 10 g~~IyPG~G~~~Vr~Dg 26 (66)
T 1vq8_U 10 GTDIEPGTGTMFVHKDG 26 (66)
T ss_dssp CCBCCSSCCEEEECTTS
T ss_pred CCcccCCCceEEEeeCC
Confidence 56789999999999874
No 140
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=24.03 E-value=2.1e+02 Score=20.83 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 72 VLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 72 ~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
++++-+-+.+..+...+..|.+.-++|....+++.+++.
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777788888888888888888888888888777663
No 141
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=23.92 E-value=2.1e+02 Score=21.23 Aligned_cols=49 Identities=6% Similarity=0.152 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHh
Q 045953 77 QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIMS 125 (129)
Q Consensus 77 L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~~ 125 (129)
-++.-+.++.+...+++.-..|.+.++..-.+++.++....++|+-+.+
T Consensus 36 ~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ 84 (243)
T 4a3a_A 36 KDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHE 84 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777777777777878888888888777677766543
No 142
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=23.91 E-value=1.3e+02 Score=18.40 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=14.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGK 23 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqq 23 (129)
||++||.+.+.++...+..+.-+
T Consensus 16 ~s~eEL~~~L~elk~ELf~LR~q 38 (72)
T 3v2d_2 16 LSPVELEKLVREKKRELMELRFQ 38 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666665555444
No 143
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=23.59 E-value=1.6e+02 Score=19.29 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=28.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQ 115 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~ 115 (129)
++|-...+.++.-+..|+.+-..-++.+.+++..|-+.+.+
T Consensus 21 eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~ 61 (101)
T 1d7m_A 21 EQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKN 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555666666677777777777777777777777777654
No 144
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.47 E-value=3.2e+02 Score=22.73 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 045953 87 AIAALQASKEYLEKQKAEVESNLAELLQQDP 117 (129)
Q Consensus 87 ~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~ 117 (129)
+.+.|..+.+.|+..+.+++..|.+++..=|
T Consensus 79 ~~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 79 EKEKLSNEKKEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444455555556666666666667665544
No 145
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.31 E-value=1.2e+02 Score=17.88 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=11.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l 102 (129)
.+|..+.+.++.+...|..+...|+..+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 146
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.22 E-value=2.4e+02 Score=21.27 Aligned_cols=37 Identities=3% Similarity=0.004 Sum_probs=19.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 2 SDEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEK 38 (129)
Q Consensus 2 ~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~ 38 (129)
++.++...+...+..+..++.++.....+....+.+.
T Consensus 64 d~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~ 100 (369)
T 4dk0_A 64 DSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNY 100 (369)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655555555555544444443333
No 147
>3ueb_A Putative uncharacterized protein; alpha and beta protein (A+B), unknown function; 1.98A {Thermococcus onnurineus}
Probab=23.16 E-value=1.3e+02 Score=19.98 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=25.2
Q ss_pred hhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045953 56 NTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQD 116 (129)
Q Consensus 56 ~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~ 116 (129)
.||--| .+||+.|++.++++- +++-++..+..||++-..+
T Consensus 67 EvYlEV-PiFVkVDVe~lideA--------------------~e~AYe~VE~~Lreia~~~ 106 (110)
T 3ueb_A 67 EVYLEV-PIFVKVDVDKLIDEA--------------------VERAYEIVERKLREIANER 106 (110)
T ss_dssp EEEEEC-CTTCCCCHHHHHHHH--------------------HHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEe-eeEEEEcHHHHHHHH--------------------HHHHHHHHHHHHHHHhccc
Confidence 345444 479999999988753 4445555666666665443
No 148
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.03 E-value=3e+02 Score=22.20 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELR 49 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~ 49 (129)
+++....+++.+..+++..+..+..|+...+...|....++.+|.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456666777777777777777888888888888888888887775
No 149
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.02 E-value=1.4e+02 Score=18.54 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEEL 48 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL 48 (129)
+|+-++++--.++..-...+.....++...+.+++....-++.+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444443333334444445555555555555555544444333
No 150
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.44 E-value=3.2e+02 Score=22.30 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 87 AIAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 87 ~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
+.+.|..+.+.++..+.+++..+.+++..=|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 77 KSREIVKRIGELENEVEELKKKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444445555666666667777777665443
No 151
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.31 E-value=1.7e+02 Score=22.47 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=28.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 78 EQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 78 ~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
.++.+.+...+..|..+.+||...++++..+|..+-.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888888776643
No 152
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=22.24 E-value=1.6e+02 Score=21.32 Aligned_cols=68 Identities=6% Similarity=0.114 Sum_probs=23.9
Q ss_pred hhhhhhhhhhhccChHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 045953 56 NTYKSIGRTFVLEPKSV------LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQI 123 (129)
Q Consensus 56 ~vYk~VGrmFv~~~k~~------i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~ 123 (129)
.+.+++++.|-..+--- .....++.-+.++.+...+++.-..|.+..+..-..++.+......++.-+
T Consensus 23 ~~~~~~~K~~~Ra~q~~~~k~G~~e~T~D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~ 96 (251)
T 2fic_A 23 KIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECL 96 (251)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777764432211 111123344445555555555555555555555555555555444454443
No 153
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.05 E-value=2.3e+02 Score=20.53 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVES 107 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~ 107 (129)
+.+..-|.++.+.++.+|..|......|+..+...+.
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888877765543
No 154
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=22.00 E-value=99 Score=21.69 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=2.7
Q ss_pred ChHHHHH
Q 045953 69 PKSVLMN 75 (129)
Q Consensus 69 ~k~~i~~ 75 (129)
|++.+-+
T Consensus 102 D~E~LeD 108 (143)
T 1ybx_A 102 DVEMLQD 108 (143)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 3333333
No 155
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=21.99 E-value=80 Score=16.17 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHc
Q 045953 100 KQKAEVESNLAELLQ 114 (129)
Q Consensus 100 ~~l~e~e~~Lrell~ 114 (129)
..+++++.+||..+.
T Consensus 13 qeikelennirkals 27 (31)
T 2wh0_Q 13 QEIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHHhc
Confidence 345666677776654
No 156
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=21.56 E-value=1.5e+02 Score=18.78 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=33.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
.+|...+..+...+..|++.+.+.=.+|.+.+-=+++.-.....+.+.++
T Consensus 4 ~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~ 53 (82)
T 3tq7_B 4 LELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGII 53 (82)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 35777888899999999999999999998887655553222223444443
No 157
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=21.27 E-value=96 Score=15.86 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 045953 89 AALQASKEYLEKQKA 103 (129)
Q Consensus 89 ~~Lekq~~~Le~~l~ 103 (129)
..|+.+...|+++++
T Consensus 11 aalesklqalekkle 25 (31)
T 3ljm_A 11 AALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 158
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.15 E-value=1.9e+02 Score=19.21 Aligned_cols=52 Identities=25% Similarity=0.292 Sum_probs=37.3
Q ss_pred ChHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHH
Q 045953 69 PKSVLMNE---QEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLA 120 (129)
Q Consensus 69 ~k~~i~~e---L~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~ 120 (129)
++++++.+ |+.+.+.++.+-..|.......-.++.+++..++.+-.....|-
T Consensus 31 SKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 31 SKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 66666664 67778888888877777777777788888888877665554443
No 159
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=20.83 E-value=2.2e+02 Score=22.08 Aligned_cols=48 Identities=23% Similarity=0.185 Sum_probs=38.2
Q ss_pred hhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 65 FVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 65 Fv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
|....-+.-+..|.+..+.+..++..|-.....++..|.-..+.++++
T Consensus 83 ~~~~~~~~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~i 130 (302)
T 2y3a_B 83 FRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREI 130 (302)
T ss_dssp ----CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhH
Confidence 666666788888999999999999999999999999888888887777
No 160
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=20.78 E-value=2.3e+02 Score=20.13 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHH
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSES 86 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~ 86 (129)
.-+|.|-|.=+......++.+..=...+..--+.+.-...+|..|.|+.|-|...-- -++.+..++..-...++.
T Consensus 51 qtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a-----~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 51 QTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEA-----AVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555567777889999999999976422 234444444444444444
Q ss_pred HHHHHH
Q 045953 87 AIAALQ 92 (129)
Q Consensus 87 ~i~~Le 92 (129)
-...-+
T Consensus 126 A~~A~~ 131 (158)
T 3tul_A 126 ATDATV 131 (158)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 161
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.30 E-value=1.1e+02 Score=16.23 Aligned_cols=20 Identities=10% Similarity=-0.080 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 045953 83 DSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 83 ~~e~~i~~Lekq~~~Le~~l 102 (129)
.++++++.|-.....|+..+
T Consensus 4 QLEdKVEell~~~~~le~EV 23 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444444444444444433
No 162
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=20.26 E-value=2e+02 Score=19.13 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045953 70 KSVLMNEQEQRLKDSESAIAALQASKEYLEKQK 102 (129)
Q Consensus 70 k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l 102 (129)
.+.+..-|.++.+.++.+|..|+.....|+.-+
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 77 SADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666665544
No 163
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=20.10 E-value=2.3e+02 Score=22.50 Aligned_cols=15 Identities=40% Similarity=0.428 Sum_probs=13.1
Q ss_pred CCcHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKG 15 (129)
Q Consensus 1 m~d~el~k~~~Elq~ 15 (129)
++|+.+|+.|++++.
T Consensus 236 ~~d~~~~~~~~~i~~ 250 (365)
T 3fse_A 236 ESDVEAKALFQEMIT 250 (365)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 479999999999987
No 164
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.08 E-value=2.7e+02 Score=20.50 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
+.++..|......+...+.+.+...+.|++++..++.+.+
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455566666666666666666666666666666666554
Done!