Query 045953
Match_columns 129
No_of_seqs 106 out of 309
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 12:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045953.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045953hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 99.8 5.6E-21 4.1E-25 130.9 9.8 106 9-114 2-107 (107)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 98.3 8.2E-06 6E-10 55.6 11.3 105 10-114 3-130 (133)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 93.8 0.13 9.4E-06 32.9 7.1 98 5-104 5-104 (107)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 86.3 0.5 3.6E-05 30.7 4.6 101 16-116 2-125 (133)
5 d1nkpa_ a.38.1.1 (A:) Myc prot 79.7 4.4 0.00032 24.2 7.4 64 40-104 20-84 (88)
6 d1nlwa_ a.38.1.1 (A:) Mad prot 75.1 4.3 0.00031 23.8 5.7 62 41-103 16-78 (79)
7 d2azeb1 e.63.1.2 (B:201-301) T 66.5 7.2 0.00053 24.4 5.6 35 80-114 2-36 (101)
8 d1ny9a_ a.181.1.1 (A:) Transcr 64.9 1 7.2E-05 27.9 1.0 19 52-70 47-65 (94)
9 d1n1fa_ a.26.1.3 (A:) Interleu 63.8 3.5 0.00025 27.9 3.8 63 2-64 75-139 (156)
10 d1seta1 a.2.7.1 (A:1-110) Sery 54.3 18 0.0013 22.1 5.8 35 84-118 69-103 (110)
11 d1vqov1 a.2.2.1 (V:1-65) Ribos 53.1 17 0.0012 20.6 5.2 47 1-47 11-62 (65)
12 d1nkpb_ a.38.1.1 (B:) Max prot 50.2 20 0.0015 20.7 7.0 63 40-103 16-78 (83)
13 d1seta1 a.2.7.1 (A:1-110) Sery 39.9 35 0.0026 20.6 11.2 32 74-105 66-97 (110)
14 d1urfa_ a.2.6.1 (A:) Protein k 39.4 34 0.0025 20.2 5.3 31 7-37 42-72 (81)
15 d1nlwa_ a.38.1.1 (A:) Mad prot 38.4 32 0.0023 19.6 6.4 70 37-110 9-78 (79)
16 d1lrza1 a.2.7.4 (A:245-309) Me 33.1 39 0.0029 19.1 7.1 23 71-93 2-24 (65)
17 d1vqou1 g.39.1.6 (U:4-56) Ribo 32.0 2.9 0.00021 23.5 -0.9 17 54-70 7-23 (53)
18 d1cuna2 a.7.1.1 (A:116-219) Sp 30.1 46 0.0034 19.0 6.3 22 75-96 72-93 (104)
19 d1nkpb_ a.38.1.1 (B:) Max prot 28.1 50 0.0037 18.8 6.1 44 67-110 35-78 (83)
20 d2hkja2 d.14.1.3 (A:307-470) T 26.6 59 0.0043 21.8 5.2 39 57-96 115-153 (164)
21 d1wu9a1 a.245.1.1 (A:191-249) 26.3 51 0.0037 18.3 7.3 51 74-124 3-53 (59)
22 d1r8ea1 a.6.1.3 (A:3-120) Tran 24.9 67 0.0049 19.2 7.8 31 68-98 73-103 (118)
23 d1ubdc2 g.37.1.1 (C:323-350) Y 23.2 4.4 0.00032 19.6 -1.0 14 57-70 4-17 (28)
24 d1giqa1 d.166.1.1 (A:3-209) En 22.6 17 0.0013 25.1 1.7 33 33-66 66-98 (207)
25 d1ydxa1 d.287.1.2 (A:1-193) Bi 21.4 89 0.0064 19.3 5.3 38 61-98 132-170 (193)
26 d1ivsa1 a.2.7.3 (A:797-862) Va 21.3 43 0.0031 18.4 3.1 34 64-97 31-64 (66)
27 d1e52a_ a.2.9.1 (A:) C-termina 20.9 56 0.0041 17.8 3.5 37 1-37 10-51 (56)
28 d1nkpa_ a.38.1.1 (A:) Myc prot 20.2 77 0.0056 18.1 9.5 75 34-112 11-85 (88)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=99.84 E-value=5.6e-21 Score=130.94 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHH
Q 045953 9 AFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAI 88 (129)
Q Consensus 9 ~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i 88 (129)
.+++...++..++++++.+.+|+.+++.++++++++++||..+|||++||+.||.+||..|+++++.+|.++++.++.+|
T Consensus 2 ~lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i 81 (107)
T d1fxka_ 2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLRE 81 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 89 AALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 89 ~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
++|+++.+++++++++.+.+|+++++
T Consensus 82 ~~l~~q~~~l~~~l~~~~~~l~~~~k 107 (107)
T d1fxka_ 82 KTIERQEERVMKKLQEMQVNIQEAMK 107 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998763
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=98.26 E-value=8.2e-06 Score=55.56 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCc--------------------hhhhhhhh-hhh
Q 045953 10 FQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLP--DNT--------------------NTYKSIGR-TFV 66 (129)
Q Consensus 10 ~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~--~dt--------------------~vYk~VGr-mFv 66 (129)
+.||..++...+++++.+.+++..+...+.+...+.+-|+.++ ++. +++-+||. .||
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~v 82 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI 82 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeee
Confidence 5666777777777777777777777777777776666665553 222 34444444 478
Q ss_pred ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
..|.++.++-++.+++.++..++.|.+....++.++.+.+..++++++
T Consensus 83 E~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~ 130 (133)
T d1fxkc_ 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999875
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=93.82 E-value=0.13 Score=32.89 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCchhhhhhhhhhhccChHHHHHHHHHHHh
Q 045953 5 ANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEEL--RQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLK 82 (129)
Q Consensus 5 el~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL--~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~ 82 (129)
+.-.-|+.+|.++....++++.+.+++.-.+..+........+- =.+-++.=|=.+++ =+..+..+=++.|+.+++
T Consensus 5 e~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~--e~~~~l~~~~e~l~~~i~ 82 (107)
T d1fxka_ 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKD--ELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHH--HHHHHHHHHHHHHHHHHH
Confidence 45567999999999999999999999999888888877655431 11222222223333 345566677788899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 045953 83 DSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 83 ~~e~~i~~Lekq~~~Le~~l~e 104 (129)
.++..++.++++-..+++++.+
T Consensus 83 ~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 83 TIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988865
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=86.30 E-value=0.5 Score=30.67 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhh-hhhh---------hhhccChHH-------------
Q 045953 16 RMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYK-SIGR---------TFVLEPKSV------------- 72 (129)
Q Consensus 16 k~~~~qqql~~v~~Q~~~~e~~~r~~~lT~~EL~~l~~dt~vYk-~VGr---------mFv~~~k~~------------- 72 (129)
.+.++..+++.+..++..+...+........|+..+-+.-.... +.|. +||.....+
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~ 81 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCee
Confidence 35678889999999999999999999999999987754433333 2332 344433332
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045953 73 LMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQD 116 (129)
Q Consensus 73 i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~ 116 (129)
+.....+-.+-++.+++.|++..+.+.+.+...+.++.++...-
T Consensus 82 vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~ 125 (133)
T d1fxkc_ 82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567788888999999999999999999999999998877543
No 5
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.71 E-value=4.4 Score=24.23 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCC-CCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045953 40 RAYLTLEELRQL-PDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAE 104 (129)
Q Consensus 40 ~~~lT~~EL~~l-~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e 104 (129)
.+.-...+|.++ |+.... ....++-|+..--+++..|.+....+..++..|.++...|...+..
T Consensus 20 ~in~~f~~Lr~llP~~~~~-~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 20 ELKRSFFALRDQIPELENN-EKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHTTCGGGTTC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777766 432222 2245566666666666666666666666666666666666655544
No 6
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.06 E-value=4.3 Score=23.79 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=34.0
Q ss_pred HHHHHHHhcCC-CCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 41 AYLTLEELRQL-PDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 41 ~~lT~~EL~~l-~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
+.-...+|.++ |+.... .-..++=|+..--+++..|......+...+..|.++...|..+++
T Consensus 16 in~~f~~L~~llP~~~~~-~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 16 LRLSLEKLKGLVPLGPDS-SRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHSSCCCSSS-CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445666665 432211 124555566666666666666666666666666666666655543
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.48 E-value=7.2 Score=24.37 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=28.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045953 80 RLKDSESAIAALQASKEYLEKQKAEVESNLAELLQ 114 (129)
Q Consensus 80 ~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~ 114 (129)
+...+..++..|+.++..|.......+.+|+.+-.
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lte 36 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667788888888888888888888888888653
No 8
>d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S {Streptomyces lividans [TaxId: 1916]}
Probab=64.88 E-value=1 Score=27.94 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=16.8
Q ss_pred CCCchhhhhhhhhhhccCh
Q 045953 52 PDNTNTYKSIGRTFVLEPK 70 (129)
Q Consensus 52 ~~dt~vYk~VGrmFv~~~k 70 (129)
|++..+|+++|+|||-.|+
T Consensus 47 ~~s~e~~~~Lg~mYv~D~r 65 (94)
T d1ny9a_ 47 DCGYEMHTCLGEMYVSDER 65 (94)
T ss_dssp CCCHHHHHHHHHHTTSTHH
T ss_pred CCCHHHHHHHHHHHcCCHH
Confidence 6788899999999998875
No 9
>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.83 E-value=3.5 Score=27.85 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=45.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCCchhhhhhhhh
Q 045953 2 SDEANRAAFQEIKGRMIENTGKMKQVQNQMR--NKEGEKKRAYLTLEELRQLPDNTNTYKSIGRT 64 (129)
Q Consensus 2 ~d~el~k~~~Elq~k~~~~qqql~~v~~Q~~--~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrm 64 (129)
.++.++.-+..+...+..+...|........ --+...+........+.+++++..+||++|-+
T Consensus 75 ~~~~i~~~v~sLan~f~~L~~~L~~C~~~~~C~~~~~~~~~v~~~~~~~~kl~~~~g~~KAiGEl 139 (156)
T d1n1fa_ 75 PNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYDQLEVHAAAIKSLGEL 139 (156)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHTH
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhChhhcCCCCchHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4567778888888888888888888865332 23344566667777778887788999999986
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=54.32 E-value=18 Score=22.09 Aligned_cols=35 Identities=31% Similarity=0.208 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 045953 84 SESAIAALQASKEYLEKQKAEVESNLAELLQQDPG 118 (129)
Q Consensus 84 ~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~ 118 (129)
+-.+.+.|..+.+.++..+.+++..+.+++..=|.
T Consensus 69 l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPN 103 (110)
T d1seta1 69 LIARGKALGEEAKRLEEALREKEARLEALLLQVPL 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455566666666777777777777787766554
No 11
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=53.11 E-value=17 Score=20.63 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHH-HHHH--HH--HHHHHHHHHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENT-GKMK--QV--QNQMRNKEGEKKRAYLTLEE 47 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~q-qql~--~v--~~Q~~~~e~~~r~~~lT~~E 47 (129)
||++||.+.+.++...+..+. .+.. .+ -.++..+.+++.++.-.+.|
T Consensus 11 ls~~eL~~~l~elk~El~~LR~~q~~~gql~~~~~ik~~Rk~IARi~Tvl~e 62 (65)
T d1vqov1 11 MTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGE 62 (65)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888888776 4442 22 25566666666666555443
No 12
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.23 E-value=20 Score=20.74 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045953 40 RAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKA 103 (129)
Q Consensus 40 ~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~ 103 (129)
.+.-...+|.++=|+.+. ...++.-|+..--.++..|.+....+...+..|......|...+.
T Consensus 16 ~in~~f~~L~~llP~~~~-~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 78 (83)
T d1nkpb_ 16 HIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHTTSGGGTT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778777443221 245566666666666666666666666666665555555555443
No 13
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=39.90 E-value=35 Score=20.56 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=26.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEV 105 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~ 105 (129)
.+++.++...+..+|+.|+.+...++..+.+.
T Consensus 66 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 66 KEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999999999999998888764
No 14
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.41 E-value=34 Score=20.23 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 7 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGE 37 (129)
Q Consensus 7 ~k~~~Elq~k~~~~qqql~~v~~Q~~~~e~~ 37 (129)
+|.+.+-+..+.++.++|..++.++..+...
T Consensus 42 rK~l~eaq~~l~eS~~Ki~lLr~~L~~~~q~ 72 (81)
T d1urfa_ 42 RKLLLTAQQMLQDSKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888888999999999999888888766543
No 15
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.44 E-value=32 Score=19.60 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 37 EKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 37 ~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
+.++-.--.+-+..|-.=.|.....++ .|+.+|+..--+=+..+...+..+......|..+...+...|.
T Consensus 9 Er~RR~~in~~f~~L~~llP~~~~~~k----~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 9 EKNRRAHLRLSLEKLKGLVPLGPDSSR----HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSSSCC----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333434444444444433333333333 4889999999999999999999888888888888877766654
No 16
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=33.14 E-value=39 Score=19.12 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Q 045953 71 SVLMNEQEQRLKDSESAIAALQA 93 (129)
Q Consensus 71 ~~i~~eL~e~~~~~e~~i~~Lek 93 (129)
++++.+|..+...++.+|..+++
T Consensus 2 ~eYl~~L~~~~~~L~~~i~k~~~ 24 (65)
T d1lrza1 2 DEYIKELNEERDILNKDLNKALK 24 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777766654
No 17
>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=32.00 E-value=2.9 Score=23.53 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.1
Q ss_pred CchhhhhhhhhhhccCh
Q 045953 54 NTNTYKSIGRTFVLEPK 70 (129)
Q Consensus 54 dt~vYk~VGrmFv~~~k 70 (129)
+.++|-+=|+|||..|-
T Consensus 7 g~~I~PG~G~~~Vr~Dg 23 (53)
T d1vqou1 7 GTDIEPGTGTMFVHKDG 23 (53)
T ss_dssp CCBCCTTCCEEEECTTS
T ss_pred CCeecCCCCEEEEecCC
Confidence 45789999999998874
No 18
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=30.14 E-value=46 Score=19.02 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=10.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 045953 75 NEQEQRLKDSESAIAALQASKE 96 (129)
Q Consensus 75 ~eL~e~~~~~e~~i~~Lekq~~ 96 (129)
..+.++...++.+-..|...-.
T Consensus 72 ~~I~~~~~~l~~~w~~L~~~~~ 93 (104)
T d1cuna2 72 ENITAKMKGLKGKVSDLEKAAA 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444433
No 19
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.10 E-value=50 Score=18.80 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=33.1
Q ss_pred ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 67 LEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLA 110 (129)
Q Consensus 67 ~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lr 110 (129)
..|+.+|+..--+=+..+...+..|....+.|......+...|.
T Consensus 35 k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 78 (83)
T d1nkpb_ 35 KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888888877777777666655554
No 20
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=26.64 E-value=59 Score=21.77 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=31.7
Q ss_pred hhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045953 57 TYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKE 96 (129)
Q Consensus 57 vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~ 96 (129)
-|.|.||=.|. |.++|.++++--+-.|--+++..-+++.
T Consensus 115 Pfts~sKEaIa-d~~EI~~EirlAl~~~~R~L~~~l~kk~ 153 (164)
T d2hkja2 115 PYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEKR 153 (164)
T ss_dssp CBSSTTCCCBC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccchhhhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999996 8899999999888888887777655543
No 21
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.34 E-value=51 Score=18.31 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 045953 74 MNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELLQQDPGLAQQIM 124 (129)
Q Consensus 74 ~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrell~~~~~~~~~~~ 124 (129)
+.+|...+..+...+..|++.+.+.=.+|.+.+-=-++-=.....+...++
T Consensus 3 ~~~L~~ei~elk~~v~~lEkERdFYF~KLRdIEilcQ~~e~~~~~~~~~I~ 53 (59)
T d1wu9a1 3 AAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIV 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccCchHHHHHH
Confidence 468899999999999999999999999999987555543333334444444
No 22
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=24.90 E-value=67 Score=19.15 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=17.7
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 045953 68 EPKSVLMNEQEQRLKDSESAIAALQASKEYL 98 (129)
Q Consensus 68 ~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~L 98 (129)
.+.+.+..-+.+....++..+..|+...+.|
T Consensus 73 ~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l 103 (118)
T d1r8ea1 73 LEMEELFAFYTEQERQIREKLDFLSALEQTI 103 (118)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666665544333
No 23
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.17 E-value=4.4 Score=19.58 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=10.1
Q ss_pred hhhhhhhhhhccCh
Q 045953 57 TYKSIGRTFVLEPK 70 (129)
Q Consensus 57 vYk~VGrmFv~~~k 70 (129)
|---+|+.|+.+++
T Consensus 4 vc~ecgkaf~essk 17 (28)
T d1ubdc2 4 VCAECGKAFVESSK 17 (28)
T ss_dssp ECTTTCCEESSHHH
T ss_pred hHHHHhHHHHHHHH
Confidence 34468999998764
No 24
>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of iota-toxin {Clostridium perfringens [TaxId: 1502]}
Probab=22.58 E-value=17 Score=25.06 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhh
Q 045953 33 NKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFV 66 (129)
Q Consensus 33 ~~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv 66 (129)
.++..++.+..++.- .++|++..|||.+|-..+
T Consensus 66 ~~~k~I~~id~al~K-~~l~~~I~VYR~~~~~~f 98 (207)
T d1giqa1 66 PREKEYKNLRNAISK-NKIDKPINVYYFESPEKF 98 (207)
T ss_dssp HHHHHHHHHHHHHHH-SBCSSCEEEEEEECGGGG
T ss_pred HHHHHHHHHHHHHhc-CCCCCCEEEEecCCHHHc
Confidence 355666777777776 489999999999998655
No 25
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=21.35 E-value=89 Score=19.26 Aligned_cols=38 Identities=8% Similarity=-0.028 Sum_probs=16.5
Q ss_pred hhhhhhc-cChHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 045953 61 IGRTFVL-EPKSVLMNEQEQRLKDSESAIAALQASKEYL 98 (129)
Q Consensus 61 VGrmFv~-~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~L 98 (129)
+..+.|. .|..+.-....+-.+.++..|..++++.+.|
T Consensus 132 i~~~~i~lpP~~~eQ~~I~~~l~~ld~~i~~~~~~i~~l 170 (193)
T d1ydxa1 132 LKELEIPFTSNKNEQHAIANTLSVFDERLENLASLIEIN 170 (193)
T ss_dssp HHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 3444434444444444444444444443333
No 26
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=21.30 E-value=43 Score=18.40 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=25.7
Q ss_pred hhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 045953 64 TFVLEPKSVLMNEQEQRLKDSESAIAALQASKEY 97 (129)
Q Consensus 64 mFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~ 97 (129)
-|+..-.++|++.-.++...+...+..++.....
T Consensus 31 ~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 31 GFREKAPKEVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp THHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3777777788888888888888888877776544
No 27
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=20.95 E-value=56 Score=17.83 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=26.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 045953 1 MSDEANRAAFQEIKGRMIENTGKM-----KQVQNQMRNKEGE 37 (129)
Q Consensus 1 m~d~el~k~~~Elq~k~~~~qqql-----~~v~~Q~~~~e~~ 37 (129)
||..++.+.+.++..+|...-..+ ..++-+|..++..
T Consensus 10 ls~~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~ 51 (56)
T d1e52a_ 10 MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 51 (56)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 577888899999998888877655 3455555555543
No 28
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.16 E-value=77 Score=18.12 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045953 34 KEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAEL 112 (129)
Q Consensus 34 ~e~~~r~~~lT~~EL~~l~~dt~vYk~VGrmFv~~~k~~i~~eL~e~~~~~e~~i~~Lekq~~~Le~~l~e~e~~Lrel 112 (129)
...+.++-.--.+-+..|-.=.|-....++ .|+.+|+..--+-+..+...+..|......|..+...+...|..+
T Consensus 11 n~~Er~RR~~in~~f~~Lr~llP~~~~~~k----~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 11 NVLERQRRNELKRSFFALRDQIPELENNEK----APKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGTTCTT----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCc----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555544443333333 489999999999999999999999999998888888877777553
Done!